BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019186
(345 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12
Length = 301
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 83/186 (44%), Gaps = 18/186 (9%)
Query: 46 KARQEVGSSENLLCVCAF----DPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTA 101
+ R +G++E LL V F P ++ + YDP W LP + K R++A VS
Sbjct: 6 RTRARLGANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVAS---VSLH 62
Query: 102 GKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPRASMLVPRAMFACCALKEK 161
+++V+GG D L+ + + +E D V W A M V R + L +
Sbjct: 63 DRIYVIGG-YDGRSRLSSVECLDYTADE----DGV---WYSVAPMNVRRGLAGATTLGDM 114
Query: 162 IVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTV 221
I V+GGF R+ S E YDP D W + D+ A G+V+ V G +
Sbjct: 115 IYVSGGFDGSRRHTSM-ERYDPNIDQWSMLGDMQTAREGA--GLVVASGVIYCLGGYDGL 171
Query: 222 QVLDHM 227
+L+ +
Sbjct: 172 NILNSV 177
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 50/125 (40%), Gaps = 15/125 (12%)
Query: 70 QLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNE 129
+ YDP D W L + + R A G+V +G ++ LGG DG N
Sbjct: 131 ERYDPNIDQWSMLGDMQTA-REGA--GLVVASGVIYCLGG-----------YDGLNILNS 176
Query: 130 VWSYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWV 189
V YDP T W+ M R+ L + I V GGF +S E Y+ D W
Sbjct: 177 VEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGT-AHLSSVEAYNIRTDSWT 235
Query: 190 PIPDL 194
+ +
Sbjct: 236 TVTSM 240
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 145 SMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTG 204
SM PR A E ++V GGF S + I E YDP+ W +P + R +
Sbjct: 1 SMQGPRTR-ARLGANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVAS- 58
Query: 205 VVIGGKVHVL--HKG---LSTVQVLDH 226
V + +++V+ + G LS+V+ LD+
Sbjct: 59 VSLHDRIYVIGGYDGRSRLSSVECLDY 85
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 42/110 (38%), Gaps = 17/110 (15%)
Query: 54 SENLLCVCAFDPE---NLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGG 110
++++ V FD + + Y+ D W T+ + + + G G+L+ + G
Sbjct: 206 NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTP---RCYVGATVLRGRLYAIAG- 261
Query: 111 SDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPRASMLVPRAMFACCALKE 160
DG+ + + YDP+ W SM R C L+E
Sbjct: 262 ----------YDGNSLLSSIECYDPIIDSWEVVTSMGTQRCDAGVCVLRE 301
>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1
Provides The Binding Site For Lasp-1 That Is Necessary
For Pseudopodia Extension
Length = 318
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 71/152 (46%), Gaps = 16/152 (10%)
Query: 72 YDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVW 131
YDP+ W + LP K+ H V+S G ++ LGG +D TN V+
Sbjct: 132 YDPVAAKWSEVKNLPIKV--YGH-NVISHNGMIYCLGGKTD----------DKKCTNRVF 178
Query: 132 SYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPI 191
Y+P W A M PR+MF K KIV+AGG T S S E +D + + W +
Sbjct: 179 IYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSAS-VEAFDLKTNKWEVM 237
Query: 192 PDLHRTHNSACTGVVIGGKVHVLHKGLSTVQV 223
+ + S+ + V + G ++ + G + +Q+
Sbjct: 238 TEFPQ-ERSSISLVSLAGSLYAIG-GFAMIQL 267
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 19/171 (11%)
Query: 68 LWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFAT 127
+QL D + W+ LP LPS R L FG+ K++V+ G D +
Sbjct: 80 FFQL-DNVSSEWVGLPPLPSA-RCL--FGLGEVDDKIYVVAGK---------DLQTEASL 126
Query: 128 NEVWSYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDV 187
+ V YDPV +WS ++ + + I GG T +K ++ +Y+P+K
Sbjct: 127 DSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGD 186
Query: 188 WVPIPDLHRTHNSACTGVVIGGKV----HVLHKGLS-TVQVLDHMGLGWTV 233
W + + +T S + GK+ V GLS +V+ D W V
Sbjct: 187 WKDLAPM-KTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEV 236
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 70 QLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNE 129
+ +D + W + P + + +VS AG L+ +GG A+ L + N+
Sbjct: 225 EAFDLKTNKWEVMTEFP---QERSSISLVSLAGSLYAIGGF--AMIQLESKEFAPTEVND 279
Query: 130 VWSYDPVTRQWS 141
+W Y+ ++W+
Sbjct: 280 IWKYEDDKKEWA 291
>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
pdb|1X2R|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
Length = 316
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 56/119 (47%), Gaps = 11/119 (9%)
Query: 70 QLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNE 129
+ Y+P W+ L L LA G V G L+ +GG +++ DG+ ++
Sbjct: 35 EAYNPSNGSWLRLADLQVPRSGLA--GCV-VGGLLYAVGGRNNS-------PDGNTDSSA 84
Query: 130 VWSYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVW 188
+ Y+P+T QWSP ASM VPR + I GG C S E Y+PE+D W
Sbjct: 85 LDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSHGCIHH-SSVERYEPERDEW 142
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 66/162 (40%), Gaps = 23/162 (14%)
Query: 70 QLYDPLRDLW-ITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATN 128
+ Y+P RD W + P+L +I GV L+ +GG DG+ N
Sbjct: 133 ERYEPERDEWHLVAPMLTRRIG----VGVAVLNRLLYAVGG-----------FDGTNRLN 177
Query: 129 EVWSYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVW 188
Y P +W M R+ C L I AGG+ + ++ E YD E + W
Sbjct: 178 SAECYYPERNEWRMITPMNTIRSGAGVCVLHNCIYAAGGYDG-QDQLNSVERYDVETETW 236
Query: 189 VPIPDLHRTHNSACTGVVIGGKVHVL-----HKGLSTVQVLD 225
+ + R H SA V GK++VL H L +V+ D
Sbjct: 237 TFVAPM-RHHRSALGITVHQGKIYVLGGYDGHTFLDSVECYD 277
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 52/138 (37%), Gaps = 18/138 (13%)
Query: 57 LLCVCAFDPENLW---QLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDA 113
L V FD N + Y P R+ W + + + IR A GV ++ GG
Sbjct: 164 LYAVGGFDGTNRLNSAECYYPERNEWRMITPM-NTIRSGA--GVCVLHNCIYAAGG---- 216
Query: 114 VDPLTGDQDGSFATNEVWSYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSCRK 173
DG N V YD T W+ A M R+ + KI V GG+
Sbjct: 217 -------YDGQDQLNSVERYDVETETWTFVAPMRHHRSALGITVHQGKIYVLGGYDG-HT 268
Query: 174 SISQAEMYDPEKDVWVPI 191
+ E YDP+ D W +
Sbjct: 269 FLDSVECYDPDSDTWSEV 286
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 62/165 (37%), Gaps = 23/165 (13%)
Query: 72 YDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVW 131
Y+P+ + W + S R+ GV+ G ++ +GG G + V
Sbjct: 88 YNPMTNQWSPCASM-SVPRNRIGVGVID--GHIYAVGG-----------SHGCIHHSSVE 133
Query: 132 SYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPI 191
Y+P +W A ML R L + GGF + ++ AE Y PE++ W I
Sbjct: 134 RYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNR-LNSAECYYPERNEWRMI 192
Query: 192 PDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDY 236
++ + G V VLH + D +VE Y
Sbjct: 193 TPMNTIRS--------GAGVCVLHNCIYAAGGYDGQDQLNSVERY 229
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
Query: 132 SYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSC---RKSISQAEMYDPEKDVW 188
+Y+P W A + VPR+ A C + + GG + S + Y+P + W
Sbjct: 36 AYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW 95
Query: 189 VPIPDLHRTHNSACTGVVIG 208
P + N GV+ G
Sbjct: 96 SPCASMSVPRNRIGVGVIDG 115
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 43/114 (37%), Gaps = 23/114 (20%)
Query: 64 DPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDG 123
D N + YD + W V P + H + G+ GK++VLGG DG
Sbjct: 221 DQLNSVERYDVETETWTF--VAPMR-HHRSALGITVHQGKIYVLGG-----------YDG 266
Query: 124 SFATNEVWSYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQ 177
+ V YDP + WS M R+ + VA CRK I Q
Sbjct: 267 HTFLDSVECYDPDSDTWSEVTRMTSGRS---------GVGVAVTMEPCRKQIDQ 311
>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With
The N-Terminal Region Of The Nrf2 Transcription Factor
pdb|2Z32|A Chain A, Crystal Structure Of Keap1 Complexed With Prothymosin
Alpha
pdb|3ADE|A Chain A, Crystal Structure Of Keap1 In Complex With Sequestosome-
1P62
Length = 318
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 56/119 (47%), Gaps = 11/119 (9%)
Query: 70 QLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNE 129
+ Y+P W+ L L LA G V G L+ +GG +++ DG+ ++
Sbjct: 36 EAYNPSNGSWLRLADLQVPRSGLA--GCV-VGGLLYAVGGRNNS-------PDGNTDSSA 85
Query: 130 VWSYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVW 188
+ Y+P+T QWSP ASM VPR + I GG C S E Y+PE+D W
Sbjct: 86 LDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSHGCIHH-SSVERYEPERDEW 143
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 66/162 (40%), Gaps = 23/162 (14%)
Query: 70 QLYDPLRDLW-ITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATN 128
+ Y+P RD W + P+L +I GV L+ +GG DG+ N
Sbjct: 134 ERYEPERDEWHLVAPMLTRRIG----VGVAVLNRLLYAVGG-----------FDGTNRLN 178
Query: 129 EVWSYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVW 188
Y P +W M R+ C L I AGG+ + ++ E YD E + W
Sbjct: 179 SAECYYPERNEWRMITPMNTIRSGAGVCVLHNCIYAAGGYDG-QDQLNSVERYDVETETW 237
Query: 189 VPIPDLHRTHNSACTGVVIGGKVHVL-----HKGLSTVQVLD 225
+ + R H SA V GK++VL H L +V+ D
Sbjct: 238 TFVAPM-RHHRSALGITVHQGKIYVLGGYDGHTFLDSVECYD 278
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 52/138 (37%), Gaps = 18/138 (13%)
Query: 57 LLCVCAFDPENLW---QLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDA 113
L V FD N + Y P R+ W + + + IR A GV ++ GG
Sbjct: 165 LYAVGGFDGTNRLNSAECYYPERNEWRMITPM-NTIRSGA--GVCVLHNCIYAAGG---- 217
Query: 114 VDPLTGDQDGSFATNEVWSYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSCRK 173
DG N V YD T W+ A M R+ + KI V GG+
Sbjct: 218 -------YDGQDQLNSVERYDVETETWTFVAPMRHHRSALGITVHQGKIYVLGGYDG-HT 269
Query: 174 SISQAEMYDPEKDVWVPI 191
+ E YDP+ D W +
Sbjct: 270 FLDSVECYDPDSDTWSEV 287
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 62/165 (37%), Gaps = 23/165 (13%)
Query: 72 YDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVW 131
Y+P+ + W + S R+ GV+ G ++ +GG G + V
Sbjct: 89 YNPMTNQWSPCASM-SVPRNRIGVGVID--GHIYAVGG-----------SHGCIHHSSVE 134
Query: 132 SYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPI 191
Y+P +W A ML R L + GGF + ++ AE Y PE++ W I
Sbjct: 135 RYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNR-LNSAECYYPERNEWRMI 193
Query: 192 PDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDY 236
++ + G V VLH + D +VE Y
Sbjct: 194 TPMNTIRS--------GAGVCVLHNCIYAAGGYDGQDQLNSVERY 230
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
Query: 132 SYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSC---RKSISQAEMYDPEKDVW 188
+Y+P W A + VPR+ A C + + GG + S + Y+P + W
Sbjct: 37 AYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW 96
Query: 189 VPIPDLHRTHNSACTGVVIG 208
P + N GV+ G
Sbjct: 97 SPCASMSVPRNRIGVGVIDG 116
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 43/114 (37%), Gaps = 23/114 (20%)
Query: 64 DPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDG 123
D N + YD + W V P + H + G+ GK++VLGG DG
Sbjct: 222 DQLNSVERYDVETETWTF--VAPMR-HHRSALGITVHQGKIYVLGG-----------YDG 267
Query: 124 SFATNEVWSYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQ 177
+ V YDP + WS M R+ + VA CRK I Q
Sbjct: 268 HTFLDSVECYDPDSDTWSEVTRMTSGRS---------GVGVAVTMEPCRKQIDQ 312
>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1
pdb|2FLU|X Chain X, Crystal Structure Of The Kelch-Neh2 Complex
Length = 308
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 55/119 (46%), Gaps = 11/119 (9%)
Query: 70 QLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNE 129
+ Y+P W+ L L LA G V G L+ +GG +++ DG+ ++
Sbjct: 42 EAYNPSDGTWLRLADLQVPRSGLA--GCV-VGGLLYAVGGRNNS-------PDGNTDSSA 91
Query: 130 VWSYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVW 188
+ Y+P+T QWSP A M VPR + I GG C S E Y+PE+D W
Sbjct: 92 LDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNS-VERYEPERDEW 149
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 68/167 (40%), Gaps = 25/167 (14%)
Query: 66 ENLWQLYDPLRDLW-ITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGS 124
N + Y+P RD W + P+L +I GV L+ +GG DG+
Sbjct: 136 HNSVERYEPERDEWHLVAPMLTRRI----GVGVAVLNRLLYAVGG-----------FDGT 180
Query: 125 FATNEVWSYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPE 184
N Y P +W +M R+ C L I AGG+ + ++ E YD E
Sbjct: 181 NRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDG-QDQLNSVERYDVE 239
Query: 185 KDVWVPI-PDLHRTHNSACTGVVIGGKVHVL-----HKGLSTVQVLD 225
+ W + P HR SA V G+++VL H L +V+ D
Sbjct: 240 TETWTFVAPMKHR--RSALGITVHQGRIYVLGGYDGHTFLDSVECYD 284
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 63/166 (37%), Gaps = 25/166 (15%)
Query: 72 YDPLRDLWITLPVLPSKI-RHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEV 130
Y+P+ + W P P + R+ GV+ G ++ +GG G N V
Sbjct: 95 YNPMTNQWS--PCAPMSVPRNRIGVGVID--GHIYAVGG-----------SHGCIHHNSV 139
Query: 131 WSYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVP 190
Y+P +W A ML R L + GGF + ++ AE Y PE++ W
Sbjct: 140 ERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNR-LNSAECYYPERNEWRM 198
Query: 191 IPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDY 236
I +A + G V VLH + D +VE Y
Sbjct: 199 I--------TAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERY 236
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 52/138 (37%), Gaps = 18/138 (13%)
Query: 57 LLCVCAFDPENLW---QLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDA 113
L V FD N + Y P R+ W + + + IR A GV ++ GG
Sbjct: 171 LYAVGGFDGTNRLNSAECYYPERNEWRMITAM-NTIRSGA--GVCVLHNCIYAAGG---- 223
Query: 114 VDPLTGDQDGSFATNEVWSYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSCRK 173
DG N V YD T W+ A M R+ + +I V GG+
Sbjct: 224 -------YDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDG-HT 275
Query: 174 SISQAEMYDPEKDVWVPI 191
+ E YDP+ D W +
Sbjct: 276 FLDSVECYDPDTDTWSEV 293
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 147 LVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVV 206
LVPR A + I AGG+ R+S+S E Y+P W+ + DL + S G V
Sbjct: 13 LVPRGSHAP-KVGRLIYTAGGYF--RQSLSYLEAYNPSDGTWLRLADL-QVPRSGLAGCV 68
Query: 207 IGGKVHVL 214
+GG ++ +
Sbjct: 69 VGGLLYAV 76
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
Query: 132 SYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSC---RKSISQAEMYDPEKDVW 188
+Y+P W A + VPR+ A C + + GG + S + Y+P + W
Sbjct: 43 AYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW 102
Query: 189 VPIPDLHRTHNSACTGVVIG 208
P + N GV+ G
Sbjct: 103 SPCAPMSVPRNRIGVGVIDG 122
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 35/88 (39%), Gaps = 14/88 (15%)
Query: 64 DPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDG 123
D N + YD + W V P K R A G+ G+++VLGG DG
Sbjct: 228 DQLNSVERYDVETETWTF--VAPMKHRRSA-LGITVHQGRIYVLGG-----------YDG 273
Query: 124 SFATNEVWSYDPVTRQWSPRASMLVPRA 151
+ V YDP T WS M R+
Sbjct: 274 HTFLDSVECYDPDTDTWSEVTRMTSGRS 301
>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small
Molecular Based On A Co-crystallization
pdb|3VNH|A Chain A, Crystal Structure Of Keap1 Soaked With Synthetic Small
Molecular
Length = 309
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 55/119 (46%), Gaps = 11/119 (9%)
Query: 70 QLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNE 129
+ Y+P W+ L L LA G V G L+ +GG +++ DG+ ++
Sbjct: 43 EAYNPSDGTWLRLADLQVPRSGLA--GCV-VGGLLYAVGGRNNS-------PDGNTDSSA 92
Query: 130 VWSYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVW 188
+ Y+P+T QWSP A M VPR + I GG C S E Y+PE+D W
Sbjct: 93 LDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNS-VERYEPERDEW 150
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 68/167 (40%), Gaps = 25/167 (14%)
Query: 66 ENLWQLYDPLRDLW-ITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGS 124
N + Y+P RD W + P+L +I GV L+ +GG DG+
Sbjct: 137 HNSVERYEPERDEWHLVAPMLTRRI----GVGVAVLNRLLYAVGG-----------FDGT 181
Query: 125 FATNEVWSYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPE 184
N Y P +W +M R+ C L I AGG+ + ++ E YD E
Sbjct: 182 NRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDG-QDQLNSVERYDVE 240
Query: 185 KDVWVPI-PDLHRTHNSACTGVVIGGKVHVL-----HKGLSTVQVLD 225
+ W + P HR SA V G+++VL H L +V+ D
Sbjct: 241 TETWTFVAPMKHR--RSALGITVHQGRIYVLGGYDGHTFLDSVECYD 285
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 63/166 (37%), Gaps = 25/166 (15%)
Query: 72 YDPLRDLWITLPVLPSKI-RHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEV 130
Y+P+ + W P P + R+ GV+ G ++ +GG G N V
Sbjct: 96 YNPMTNQWS--PCAPMSVPRNRIGVGVID--GHIYAVGG-----------SHGCIHHNSV 140
Query: 131 WSYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVP 190
Y+P +W A ML R L + GGF + ++ AE Y PE++ W
Sbjct: 141 ERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNR-LNSAECYYPERNEWRM 199
Query: 191 IPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDY 236
I +A + G V VLH + D +VE Y
Sbjct: 200 I--------TAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERY 237
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 52/138 (37%), Gaps = 18/138 (13%)
Query: 57 LLCVCAFDPENLW---QLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDA 113
L V FD N + Y P R+ W + + + IR A GV ++ GG
Sbjct: 172 LYAVGGFDGTNRLNSAECYYPERNEWRMITAM-NTIRSGA--GVCVLHNCIYAAGG---- 224
Query: 114 VDPLTGDQDGSFATNEVWSYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSCRK 173
DG N V YD T W+ A M R+ + +I V GG+
Sbjct: 225 -------YDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDG-HT 276
Query: 174 SISQAEMYDPEKDVWVPI 191
+ E YDP+ D W +
Sbjct: 277 FLDSVECYDPDTDTWSEV 294
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 147 LVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVV 206
LVPR + I AGG+ R+S+S E Y+P W+ + DL + S G V
Sbjct: 13 LVPRGSHMAPKVGRLIYTAGGYF--RQSLSYLEAYNPSDGTWLRLADL-QVPRSGLAGCV 69
Query: 207 IGGKVHVL 214
+GG ++ +
Sbjct: 70 VGGLLYAV 77
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
Query: 132 SYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSC---RKSISQAEMYDPEKDVW 188
+Y+P W A + VPR+ A C + + GG + S + Y+P + W
Sbjct: 44 AYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW 103
Query: 189 VPIPDLHRTHNSACTGVVIG 208
P + N GV+ G
Sbjct: 104 SPCAPMSVPRNRIGVGVIDG 123
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 35/88 (39%), Gaps = 14/88 (15%)
Query: 64 DPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDG 123
D N + YD + W V P K R A G+ G+++VLGG DG
Sbjct: 229 DQLNSVERYDVETETWTF--VAPMKHRRSA-LGITVHQGRIYVLGG-----------YDG 274
Query: 124 SFATNEVWSYDPVTRQWSPRASMLVPRA 151
+ V YDP T WS M R+
Sbjct: 275 HTFLDSVECYDPDTDTWSEVTRMTSGRS 302
>pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1
Length = 308
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 67/157 (42%), Gaps = 21/157 (13%)
Query: 70 QLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNE 129
+ Y+P W+ L L LA G V G L+ +GG +++ DG+ ++
Sbjct: 42 EAYNPSNGTWLRLADLQVPRSGLA--GCV-VGGLLYAVGGRNNS-------PDGNTDSSA 91
Query: 130 VWSYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVW- 188
+ Y+P T QWSP A VPR + I GG C S E Y+PE+D W
Sbjct: 92 LDCYNPXTNQWSPCAPXSVPRNRIGVGVIDGHIYAVGGSHGCIHHNS-VERYEPERDEWH 150
Query: 189 VPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLD 225
+ P L R IG V VL++ L V D
Sbjct: 151 LVAPXLTRR---------IGVGVAVLNRLLYAVGGFD 178
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 66/167 (39%), Gaps = 25/167 (14%)
Query: 66 ENLWQLYDPLRDLW-ITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGS 124
N + Y+P RD W + P L +I GV L+ +GG DG+
Sbjct: 136 HNSVERYEPERDEWHLVAPXLTRRI----GVGVAVLNRLLYAVGG-----------FDGT 180
Query: 125 FATNEVWSYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPE 184
N Y P +W + R+ C L I AGG+ + ++ E YD E
Sbjct: 181 NRLNSAECYYPERNEWRXITAXNTIRSGAGVCVLHNCIYAAGGYDG-QDQLNSVERYDVE 239
Query: 185 KDVWVPI-PDLHRTHNSACTGVVIGGKVHVL-----HKGLSTVQVLD 225
+ W + P HR SA V G+++VL H L +V+ D
Sbjct: 240 TETWTFVAPXKHR--RSALGITVHQGRIYVLGGYDGHTFLDSVECYD 284
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 61/166 (36%), Gaps = 25/166 (15%)
Query: 72 YDPLRDLWITLPVLPSKI-RHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEV 130
Y+P + W P P + R+ GV+ G ++ +GG G N V
Sbjct: 95 YNPXTNQWS--PCAPXSVPRNRIGVGVID--GHIYAVGG-----------SHGCIHHNSV 139
Query: 131 WSYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVP 190
Y+P +W A L R L + GGF + ++ AE Y PE++ W
Sbjct: 140 ERYEPERDEWHLVAPXLTRRIGVGVAVLNRLLYAVGGFDGTNR-LNSAECYYPERNEWRX 198
Query: 191 IPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDY 236
I +A + G V VLH + D +VE Y
Sbjct: 199 I--------TAXNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERY 236
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 50/138 (36%), Gaps = 18/138 (13%)
Query: 57 LLCVCAFDPENLW---QLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDA 113
L V FD N + Y P R+ W + + IR A GV ++ GG
Sbjct: 171 LYAVGGFDGTNRLNSAECYYPERNEWRXITAX-NTIRSGA--GVCVLHNCIYAAGG---- 223
Query: 114 VDPLTGDQDGSFATNEVWSYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSCRK 173
DG N V YD T W+ A R+ + +I V GG+
Sbjct: 224 -------YDGQDQLNSVERYDVETETWTFVAPXKHRRSALGITVHQGRIYVLGGYDG-HT 275
Query: 174 SISQAEMYDPEKDVWVPI 191
+ E YDP+ D W +
Sbjct: 276 FLDSVECYDPDTDTWSEV 293
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 147 LVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVV 206
LVPR A + I AGG+ R+S+S E Y+P W+ + DL + S G V
Sbjct: 13 LVPRGSHAP-KVGRLIYTAGGYF--RQSLSYLEAYNPSNGTWLRLADL-QVPRSGLAGCV 68
Query: 207 IGGKVHVL 214
+GG ++ +
Sbjct: 69 VGGLLYAV 76
>pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
pdb|2XN4|B Chain B, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
Length = 302
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 68/169 (40%), Gaps = 21/169 (12%)
Query: 70 QLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNE 129
+ YD + W + LPS+ G+V AG +F +GG +GS
Sbjct: 33 ECYDFKEERWHQVAELPSR---RCRAGMVYMAGLVFAVGG-----------FNGSLRVRT 78
Query: 130 VWSYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWV 189
V SYDPV QW+ A+M R+ L + GGF +S E Y+ + + W
Sbjct: 79 VDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGS-TGLSSVEAYNIKSNEWF 137
Query: 190 PIPDLHRTHNSACTG------VVIGGKVHVLHKGLSTVQVLDHMGLGWT 232
+ ++ +S G +GG + LSTV+ + WT
Sbjct: 138 HVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWT 186
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 55/139 (39%), Gaps = 17/139 (12%)
Query: 70 QLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNE 129
+ Y+ + W + + ++ R A GV++ L+ +GG DG
Sbjct: 176 ECYNATTNEWTYIAEMSTR-RSGAGVGVLNNL--LYAVGG-----------HDGPLVRKS 221
Query: 130 VWSYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFT-SCRKSISQAEMYDPEKDVW 188
V YDP T W A M + R CA+ + V GG SC +++ E Y+P D W
Sbjct: 222 VEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSC--NLASVEYYNPTTDKW 279
Query: 189 VPIPDLHRTHNSACTGVVI 207
+ T S VI
Sbjct: 280 TVVSSCMSTGRSYAGVTVI 298
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 57/136 (41%), Gaps = 15/136 (11%)
Query: 72 YDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVW 131
YDP++D W ++ + + L G G L+ +GG DGS + V
Sbjct: 82 YDPVKDQWTSVANMRDRRSTL---GAAVLNGLLYAVGG-----------FDGSTGLSSVE 127
Query: 132 SYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGF-TSCRKSISQAEMYDPEKDVWVP 190
+Y+ + +W A M R+ + + GG+ + R+ +S E Y+ + W
Sbjct: 128 AYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTY 187
Query: 191 IPDLHRTHNSACTGVV 206
I ++ + A GV+
Sbjct: 188 IAEMSTRRSGAGVGVL 203
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 133 YDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTS--CRKSISQAEMYDPEKDVWVP 190
Y+ T +W+ A M R+ L + GG RKS+ E+YDP + W
Sbjct: 178 YNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSV---EVYDPTTNAWRQ 234
Query: 191 IPDLHRTHNSACTGVVIG 208
+ D++ +A V G
Sbjct: 235 VADMNMCRRNAGVCAVNG 252
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 14/92 (15%)
Query: 70 QLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNE 129
++YDP + W + + R+ GV + G L+V+GG DGS
Sbjct: 223 EVYDPTTNAWRQVADMNMCRRNA---GVCAVNGLLYVVGG-----------DDGSCNLAS 268
Query: 130 VWSYDPVTRQWSPRASMLVPRAMFACCALKEK 161
V Y+P T +W+ +S + +A + +K
Sbjct: 269 VEYYNPTTDKWTVVSSCMSTGRSYAGVTVIDK 300
>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7
Length = 306
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 67/175 (38%), Gaps = 20/175 (11%)
Query: 68 LWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFAT 127
L++ YD + W T P S + G+V G ++V GG G+
Sbjct: 119 LFECYDTRTESWHTKP---SMLTQRCSHGMVEANGLIYVCGGS-------LGNNVSGRVL 168
Query: 128 NEVWSYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDV 187
N YDP T W+ M+ R +K+KI GG + E YD + +
Sbjct: 169 NSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNG-LGGLDNVEYYDIKLNE 227
Query: 188 W---VPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWL 239
W P+P T A G + V+VL G V L H+ L + E W+
Sbjct: 228 WKMVSPMPWKGVTVKCAAVGSI----VYVL-AGFQGVGRLGHI-LEYNTETDKWV 276
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 50/133 (37%), Gaps = 19/133 (14%)
Query: 72 YDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVW 131
Y+ ++D W + P+ LA + GK++ GG + G+ A
Sbjct: 75 YNVVKDSWYSKLGPPTPRDSLA---ACAAEGKIYTSGG----------SEVGNSALYLFE 121
Query: 132 SYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKS---ISQAEMYDPEKDVW 188
YD T W + SML R I V GG S ++ E+YDP + W
Sbjct: 122 CYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETW 181
Query: 189 V---PIPDLHRTH 198
P+ + + H
Sbjct: 182 TELCPMIEARKNH 194
>pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5
Length = 315
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 128 NEVWSYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDV 187
N++ YDP +W A M R++F +I+VA G T + S AE+Y +
Sbjct: 165 NKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLT-SSAEVYSITDNK 223
Query: 188 WVPIPDLHRTHNSACTGVVIG 208
W P + +S ++G
Sbjct: 224 WAPFEAFPQERSSLSLVSLVG 244
>pdb|2EID|A Chain A, Galactose Oxidase W290g Mutant
Length = 639
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 52/130 (40%), Gaps = 11/130 (8%)
Query: 132 SYDPVTRQWSPRASMLVPRAMFACCAL----KEKIVVAGGFTSCRKSISQAEMYDPEKDV 187
S+DP T S R + MF C + +IVV GG + + S +YD D
Sbjct: 206 SWDPSTGIVSDRTVTVTKHDMF-CPGISMDGNGQIVVTGGNDAKKTS-----LYDSSSDS 259
Query: 188 WVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQGPMAIVH 247
W+P PD+ + + G+V + G + V + G ++ W P A V+
Sbjct: 260 WIPGPDMQVARGYQSSATMSDGRVFTI-GGSGSGGVFEKNGEVYSPSSKTWTSLPNAKVN 318
Query: 248 DSVYLMSHGL 257
+ GL
Sbjct: 319 PMLTADKQGL 328
>pdb|2EIC|A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f
Length = 639
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 51/130 (39%), Gaps = 11/130 (8%)
Query: 132 SYDPVTRQWSPRASMLVPRAMFACCAL----KEKIVVAGGFTSCRKSISQAEMYDPEKDV 187
S+DP T S R + MF C + +IVV GG + + S +YD D
Sbjct: 206 SWDPSTGIVSDRTVTVTKHDMF-CPGISMDGNGQIVVTGGNDAKKTS-----LYDSSSDS 259
Query: 188 WVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQGPMAIVH 247
W+P PD+ + + G+V + S V + G ++ W P A V+
Sbjct: 260 WIPGPDMQVARGYQSSATMSDGRVFTIGGSFSG-GVFEKNGEVYSPSSKTWTSLPNAKVN 318
Query: 248 DSVYLMSHGL 257
+ GL
Sbjct: 319 PMLTADKQGL 328
>pdb|2WQ8|A Chain A, Glycan Labelling Using Engineered Variants Of Galactose
Oxidase Obtained By Directed Evolution
Length = 661
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 51/130 (39%), Gaps = 11/130 (8%)
Query: 132 SYDPVTRQWSPRASMLVPRAMFACCAL----KEKIVVAGGFTSCRKSISQAEMYDPEKDV 187
S+DP T S R + MF C + +IVV GG + + S +YD D
Sbjct: 228 SWDPSTGIVSDRTVTVTKHDMF-CPGISMDGNGQIVVTGGNDAKKTS-----LYDSSSDS 281
Query: 188 WVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQGPMAIVH 247
W+P PD+ + + G+V + S V + G ++ W P A V+
Sbjct: 282 WIPGPDMQVARGYQSSATMSDGRVFTIGGSFSG-GVFEKNGEVYSPSSKTWTSLPNAKVN 340
Query: 248 DSVYLMSHGL 257
+ GL
Sbjct: 341 PMLTADKQGL 350
>pdb|2EIB|A Chain A, Crystal Structure Of Galactose Oxidase, W290h Mutant
Length = 639
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 52/130 (40%), Gaps = 11/130 (8%)
Query: 132 SYDPVTRQWSPRASMLVPRAMFACCAL----KEKIVVAGGFTSCRKSISQAEMYDPEKDV 187
S+DP T S R + MF C + +IVV GG + + S +YD D
Sbjct: 206 SWDPSTGIVSDRTVTVTKHDMF-CPGISMDGNGQIVVTGGNDAKKTS-----LYDSSSDS 259
Query: 188 WVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQGPMAIVH 247
W+P PD+ + + G+V + G + V + G ++ W P A V+
Sbjct: 260 WIPGPDMQVARGYQSSATMSDGRVFTI-GGSHSGGVFEKNGEVYSPSSKTWTSLPNAKVN 318
Query: 248 DSVYLMSHGL 257
+ GL
Sbjct: 319 PMLTADKQGL 328
>pdb|1T2X|A Chain A, Glactose Oxidase C383s Mutant Identified By Directed
Evolution
Length = 639
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 52/130 (40%), Gaps = 11/130 (8%)
Query: 132 SYDPVTRQWSPRASMLVPRAMFACCAL----KEKIVVAGGFTSCRKSISQAEMYDPEKDV 187
S+DP T S R + MF C + +IVV GG + + S +YD D
Sbjct: 206 SWDPSTGIVSDRTVTVTKHDMF-CPGISMDGNGQIVVTGGNDAKKTS-----LYDSSSDS 259
Query: 188 WVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQGPMAIVH 247
W+P PD+ + + G+V + G + V + G ++ W P A V+
Sbjct: 260 WIPGPDMQVARGYQSSATMSDGRVFTI-GGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVN 318
Query: 248 DSVYLMSHGL 257
+ GL
Sbjct: 319 PMLTADKQGL 328
>pdb|2EIE|A Chain A, Crystal Structure Of Galactose Oxidase Complexed With
Azide
pdb|1GOF|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOG|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOH|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|2JKX|A Chain A, Galactose Oxidase. Matgo. Copper Free, Expressed In Pichia
Pastoris.
pdb|2VZ1|A Chain A, Premat-Galactose Oxidase
pdb|2VZ3|A Chain A, Bleached Galactose Oxidase
Length = 639
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 52/130 (40%), Gaps = 11/130 (8%)
Query: 132 SYDPVTRQWSPRASMLVPRAMFACCAL----KEKIVVAGGFTSCRKSISQAEMYDPEKDV 187
S+DP T S R + MF C + +IVV GG + + S +YD D
Sbjct: 206 SWDPSTGIVSDRTVTVTKHDMF-CPGISMDGNGQIVVTGGNDAKKTS-----LYDSSSDS 259
Query: 188 WVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQGPMAIVH 247
W+P PD+ + + G+V + G + V + G ++ W P A V+
Sbjct: 260 WIPGPDMQVARGYQSSATMSDGRVFTI-GGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVN 318
Query: 248 DSVYLMSHGL 257
+ GL
Sbjct: 319 PMLTADKQGL 328
>pdb|1K3I|A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase
Length = 656
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 50/129 (38%), Gaps = 9/129 (6%)
Query: 132 SYDPVTRQWSPRASMLVPRAMFA---CCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVW 188
S+DP T S R + MF +IVV GG + + S +YD D W
Sbjct: 223 SWDPSTGIVSDRTVTVTKHDMFXPGISMDGNGQIVVTGGNDAKKTS-----LYDSSSDSW 277
Query: 189 VPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQGPMAIVHD 248
+P PD+ + + G+V + G + V + G ++ W P A V+
Sbjct: 278 IPGPDMQVARGYQSSATMSDGRVFTI-GGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNP 336
Query: 249 SVYLMSHGL 257
+ GL
Sbjct: 337 MLTADKQGL 345
>pdb|2ZW9|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZW9|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
Length = 695
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 11/76 (14%)
Query: 95 FGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPRASMLVPRAMFA 154
F +S +L ++GG P G D W +D TR+WS S+ R +
Sbjct: 445 FTTISRNNQLLLIGGRKA---PHQGLSDN-------WIFDMKTREWSMIKSLSHTRFRHS 494
Query: 155 CCALKE-KIVVAGGFT 169
C+L + +++ GG T
Sbjct: 495 ACSLPDGNVLILGGVT 510
>pdb|3QJA|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis
Indole-3-Glycerol Phosphate Synthase (Trpc) In Apo Form
pdb|3T40|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Indole
Glycerol Phosphate Synthase (Igps) Complex With
N-2-Carboxyphenyl Glycine (Cpg)
pdb|3T44|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Indole
Glycerol Phosphate Synthase (Igps) In Complex With
Indole Glycerol Phosphate (Igp) Amd Anthranilate
pdb|3T55|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Indole
Glycerol Phosphate Synthase (Igps) In Complex With
Phenoxymethyl Benzoic Acid (Pmba)
pdb|3T78|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Indole
Glycerol Phosphate Synthase (Igps) In Complex With
5-Fluoroanthranilate
Length = 272
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 60 VCAFDPENLWQLYDPLRDLWITL-PVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAV 114
V + +L L D RD + + P LPS + +A GV TA L G G+DAV
Sbjct: 185 VIGVNARDLMTL-DVDRDCFARIAPGLPSSVIRIAESGVRGTADLLAYAGAGADAV 239
>pdb|4FB7|A Chain A, The Apo Form Of Idole-3-Glycerol Phosphate Synthase (Trpc)
Form Mycobacterium Tuberculosis
Length = 275
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 60 VCAFDPENLWQLYDPLRDLWITL-PVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAV 114
V + +L L D RD + + P LPS + +A GV TA L G G+DAV
Sbjct: 188 VIGVNARDLXTL-DVDRDCFARIAPGLPSSVIRIAESGVRGTADLLAYAGAGADAV 242
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,431,348
Number of Sequences: 62578
Number of extensions: 415140
Number of successful extensions: 894
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 801
Number of HSP's gapped (non-prelim): 62
length of query: 345
length of database: 14,973,337
effective HSP length: 100
effective length of query: 245
effective length of database: 8,715,537
effective search space: 2135306565
effective search space used: 2135306565
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)