Query 019186
Match_columns 345
No_of_seqs 163 out of 2160
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 07:23:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019186.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019186hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441 Proteins containing BT 100.0 2.5E-45 5.5E-50 345.0 31.5 312 6-344 229-569 (571)
2 PHA02713 hypothetical protein; 100.0 1E-40 2.2E-45 315.2 30.1 254 56-338 258-551 (557)
3 PLN02153 epithiospecifier prot 100.0 2.2E-36 4.7E-41 271.6 24.6 269 33-319 7-340 (341)
4 KOG4441 Proteins containing BT 100.0 1.7E-36 3.6E-41 285.4 24.2 223 99-344 282-522 (571)
5 PLN02153 epithiospecifier prot 100.0 2.1E-35 4.5E-40 265.3 29.0 252 74-342 4-310 (341)
6 PLN02193 nitrile-specifier pro 100.0 9.2E-35 2E-39 270.4 33.2 269 55-336 120-432 (470)
7 PLN02193 nitrile-specifier pro 100.0 1.7E-35 3.7E-40 275.3 26.0 269 32-319 150-469 (470)
8 TIGR03547 muta_rot_YjhT mutatr 100.0 2.3E-35 5E-40 265.9 26.1 250 52-316 14-344 (346)
9 PHA03098 kelch-like protein; P 100.0 3.6E-35 7.7E-40 279.4 27.9 255 55-336 250-527 (534)
10 PRK14131 N-acetylneuraminic ac 100.0 1.6E-34 3.5E-39 262.3 26.0 259 51-326 34-374 (376)
11 PHA02713 hypothetical protein; 100.0 1.1E-35 2.4E-40 281.0 18.4 230 26-273 275-544 (557)
12 TIGR03547 muta_rot_YjhT mutatr 100.0 8E-34 1.7E-38 255.8 28.0 240 82-343 1-320 (346)
13 PHA02790 Kelch-like protein; P 100.0 3.3E-34 7.1E-39 267.3 25.7 205 54-328 270-478 (480)
14 TIGR03548 mutarot_permut cycli 100.0 1.4E-33 3.1E-38 251.6 27.6 233 52-300 10-316 (323)
15 PRK14131 N-acetylneuraminic ac 100.0 5.5E-32 1.2E-36 245.7 27.0 244 78-343 18-342 (376)
16 TIGR03548 mutarot_permut cycli 100.0 1.8E-31 3.9E-36 238.1 25.7 246 92-343 4-302 (323)
17 PHA03098 kelch-like protein; P 100.0 8.3E-32 1.8E-36 256.3 23.7 208 52-274 291-523 (534)
18 KOG4693 Uncharacterized conser 100.0 2.6E-31 5.6E-36 215.3 19.5 237 91-343 13-300 (392)
19 KOG4693 Uncharacterized conser 100.0 1.1E-30 2.4E-35 211.6 20.1 234 54-298 22-313 (392)
20 PHA02790 Kelch-like protein; P 100.0 5.1E-29 1.1E-33 232.5 23.5 177 97-344 267-446 (480)
21 KOG1230 Protein containing rep 99.9 5.4E-27 1.2E-31 200.8 15.6 272 7-327 35-347 (521)
22 KOG0379 Kelch repeat-containin 99.9 4.1E-25 9E-30 205.3 23.2 243 42-336 55-321 (482)
23 KOG0379 Kelch repeat-containin 99.9 9E-23 2E-27 189.7 21.9 199 90-341 59-272 (482)
24 KOG1230 Protein containing rep 99.9 3.1E-24 6.7E-29 184.0 9.8 294 24-331 99-483 (521)
25 KOG4152 Host cell transcriptio 99.9 4E-22 8.7E-27 175.3 14.3 255 34-299 18-344 (830)
26 KOG4152 Host cell transcriptio 99.9 9.5E-21 2.1E-25 166.7 16.1 245 77-336 17-325 (830)
27 COG3055 Uncharacterized protei 99.8 1E-18 2.2E-23 148.3 20.8 249 54-318 45-374 (381)
28 COG3055 Uncharacterized protei 99.8 8.4E-18 1.8E-22 142.7 16.4 239 80-342 28-346 (381)
29 PF13964 Kelch_6: Kelch motif 99.3 2.7E-12 5.8E-17 80.8 5.5 50 277-334 1-50 (50)
30 PF13964 Kelch_6: Kelch motif 99.2 4E-11 8.6E-16 75.5 6.4 49 149-197 1-49 (50)
31 KOG2437 Muskelin [Signal trans 99.2 1.1E-11 2.4E-16 109.9 2.5 187 74-299 236-459 (723)
32 PF01344 Kelch_1: Kelch motif; 99.1 1.5E-10 3.1E-15 71.9 4.4 47 277-331 1-47 (47)
33 PF13415 Kelch_3: Galactose ox 99.1 3E-10 6.5E-15 71.0 5.0 49 287-343 1-49 (49)
34 PF01344 Kelch_1: Kelch motif; 99.0 1.9E-10 4.1E-15 71.4 3.4 47 149-195 1-47 (47)
35 PF13418 Kelch_4: Galactose ox 99.0 5.1E-10 1.1E-14 70.0 4.8 48 277-332 1-49 (49)
36 PF07646 Kelch_2: Kelch motif; 98.9 2.6E-09 5.5E-14 66.7 5.3 47 277-331 1-49 (49)
37 PF13415 Kelch_3: Galactose ox 98.9 3.9E-09 8.4E-14 65.9 5.3 49 101-158 1-49 (49)
38 PF07646 Kelch_2: Kelch motif; 98.9 7.3E-09 1.6E-13 64.7 6.2 47 149-195 1-49 (49)
39 PF13418 Kelch_4: Galactose ox 98.8 4.3E-09 9.3E-14 65.8 3.9 47 149-195 1-48 (49)
40 KOG2437 Muskelin [Signal trans 98.8 5.9E-09 1.3E-13 92.9 4.8 154 137-329 238-421 (723)
41 smart00612 Kelch Kelch domain. 98.7 1E-08 2.2E-13 63.4 3.8 45 289-343 1-45 (47)
42 PF07250 Glyoxal_oxid_N: Glyox 98.7 1.3E-06 2.7E-11 73.5 16.8 157 127-333 45-211 (243)
43 TIGR01640 F_box_assoc_1 F-box 98.7 5.8E-06 1.2E-10 70.2 21.0 182 128-320 14-230 (230)
44 smart00612 Kelch Kelch domain. 98.7 4.7E-08 1E-12 60.4 4.8 47 103-160 1-47 (47)
45 TIGR01640 F_box_assoc_1 F-box 98.6 2.9E-05 6.3E-10 65.8 22.2 198 52-264 2-228 (230)
46 PF07250 Glyoxal_oxid_N: Glyox 98.4 3.6E-06 7.9E-11 70.7 11.7 145 70-238 49-209 (243)
47 PLN02772 guanylate kinase 98.4 2.8E-06 6E-11 75.9 10.0 82 92-186 25-110 (398)
48 KOG0281 Beta-TrCP (transducin 98.3 2.4E-05 5.1E-10 67.2 13.8 169 100-299 245-421 (499)
49 PF13854 Kelch_5: Kelch motif 98.3 1.2E-06 2.7E-11 52.4 4.4 38 276-319 3-41 (42)
50 PRK11138 outer membrane biogen 98.3 0.001 2.2E-08 61.3 25.8 220 55-326 120-361 (394)
51 PRK11138 outer membrane biogen 98.3 0.0011 2.4E-08 61.0 25.5 224 53-326 67-320 (394)
52 PLN02772 guanylate kinase 98.3 8.2E-06 1.8E-10 73.0 10.4 80 148-228 23-109 (398)
53 PF13854 Kelch_5: Kelch motif 98.3 2.7E-06 5.8E-11 51.0 5.1 40 146-185 1-41 (42)
54 TIGR03300 assembly_YfgL outer 98.1 0.0045 9.8E-08 56.6 26.4 172 128-326 155-346 (377)
55 PF12937 F-box-like: F-box-lik 98.1 2E-06 4.2E-11 53.0 2.5 41 5-45 1-41 (47)
56 TIGR03300 assembly_YfgL outer 98.1 0.0041 8.9E-08 56.9 25.0 218 53-326 63-305 (377)
57 PF13360 PQQ_2: PQQ-like domai 98.0 0.0028 6.1E-08 53.7 21.5 208 67-326 3-238 (238)
58 PLN03215 ascorbic acid mannose 98.0 0.0037 8.1E-08 56.0 21.5 38 4-41 3-41 (373)
59 PF00646 F-box: F-box domain; 97.8 5.5E-06 1.2E-10 51.3 0.7 44 4-47 2-45 (48)
60 PF13360 PQQ_2: PQQ-like domai 97.8 0.011 2.4E-07 50.0 21.2 178 54-265 35-231 (238)
61 smart00256 FBOX A Receptor for 97.7 3.5E-05 7.7E-10 45.7 2.9 37 8-44 1-37 (41)
62 PF07893 DUF1668: Protein of u 97.6 0.0028 6E-08 57.0 15.1 120 100-236 75-216 (342)
63 PF05096 Glu_cyclase_2: Glutam 97.3 0.04 8.6E-07 46.9 16.8 156 93-272 46-216 (264)
64 PF03089 RAG2: Recombination a 97.3 0.003 6.6E-08 53.3 9.7 102 104-216 41-172 (337)
65 PF12768 Rax2: Cortical protei 97.3 0.019 4.2E-07 49.7 15.0 106 127-236 15-130 (281)
66 PF08450 SGL: SMP-30/Gluconola 97.1 0.051 1.1E-06 46.4 15.9 181 55-265 11-214 (246)
67 TIGR03866 PQQ_ABC_repeats PQQ- 97.0 0.081 1.8E-06 46.1 17.5 170 128-320 11-189 (300)
68 PF08450 SGL: SMP-30/Gluconola 97.0 0.13 2.8E-06 43.9 17.9 190 101-335 11-227 (246)
69 KOG2055 WD40 repeat protein [G 97.0 0.034 7.4E-07 50.1 14.0 184 55-265 225-418 (514)
70 PF07893 DUF1668: Protein of u 96.9 0.034 7.3E-07 50.1 14.2 112 157-276 74-221 (342)
71 PF05096 Glu_cyclase_2: Glutam 96.8 0.027 5.9E-07 47.9 11.5 103 191-295 36-147 (264)
72 PRK11028 6-phosphogluconolacto 96.8 0.37 8.1E-06 43.1 23.6 247 55-343 46-328 (330)
73 TIGR03866 PQQ_ABC_repeats PQQ- 96.7 0.36 7.7E-06 42.0 21.4 222 55-320 42-281 (300)
74 PF12768 Rax2: Cortical protei 96.5 0.074 1.6E-06 46.2 12.5 110 65-193 14-130 (281)
75 KOG0310 Conserved WD40 repeat- 96.3 0.64 1.4E-05 42.4 17.4 219 66-330 47-276 (487)
76 KOG0274 Cdc4 and related F-box 96.2 0.75 1.6E-05 44.0 18.3 277 3-320 106-402 (537)
77 PF10282 Lactonase: Lactonase, 96.1 0.7 1.5E-05 41.7 17.2 238 54-329 47-333 (345)
78 cd00200 WD40 WD40 domain, foun 96.0 0.78 1.7E-05 38.8 20.4 202 66-297 72-282 (289)
79 KOG0310 Conserved WD40 repeat- 95.9 0.76 1.6E-05 42.0 16.0 213 55-299 79-302 (487)
80 cd00200 WD40 WD40 domain, foun 95.8 1 2.2E-05 38.0 22.4 219 57-320 22-251 (289)
81 cd00216 PQQ_DH Dehydrogenases 95.8 1.9 4.1E-05 41.0 21.8 113 97-233 57-191 (488)
82 PRK13684 Ycf48-like protein; P 95.8 1.4 3.1E-05 39.6 18.7 155 129-295 153-321 (334)
83 KOG2055 WD40 repeat protein [G 95.7 0.21 4.6E-06 45.2 11.6 154 44-227 258-417 (514)
84 PRK11028 6-phosphogluconolacto 95.4 1.9 4E-05 38.6 22.7 180 57-263 3-204 (330)
85 PRK04792 tolB translocation pr 95.4 2.4 5.3E-05 39.8 21.1 146 66-236 241-391 (448)
86 KOG2120 SCF ubiquitin ligase, 95.3 0.013 2.7E-07 50.4 2.4 38 5-42 98-135 (419)
87 KOG2997 F-box protein FBX9 [Ge 95.2 0.014 3E-07 50.3 2.5 46 5-50 107-157 (366)
88 PF02191 OLF: Olfactomedin-lik 95.2 1.8 3.9E-05 37.0 15.5 172 101-293 30-236 (250)
89 PF14870 PSII_BNR: Photosynthe 95.1 2.1 4.6E-05 37.7 19.1 212 55-295 27-251 (302)
90 PF03089 RAG2: Recombination a 95.1 1.9 4.1E-05 37.0 15.6 82 83-169 82-174 (337)
91 PF02191 OLF: Olfactomedin-lik 95.1 1.9 4.1E-05 36.9 16.6 187 53-263 28-246 (250)
92 cd00216 PQQ_DH Dehydrogenases 95.1 2.4 5.2E-05 40.3 17.5 166 154-327 56-273 (488)
93 KOG0291 WD40-repeat-containing 95.0 2.4 5.2E-05 41.2 16.5 143 160-320 319-468 (893)
94 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.0 3.2 6.8E-05 39.9 17.9 167 153-327 63-288 (527)
95 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.9 0.49 1.1E-05 45.3 12.5 115 204-326 65-197 (527)
96 KOG0316 Conserved WD40 repeat- 94.9 1.9 4E-05 36.0 17.5 180 55-265 29-214 (307)
97 PRK04922 tolB translocation pr 94.7 3.8 8.3E-05 38.2 20.5 146 66-236 227-377 (433)
98 PF03178 CPSF_A: CPSF A subuni 94.6 0.91 2E-05 40.5 12.8 127 128-263 62-203 (321)
99 COG4946 Uncharacterized protei 94.6 3 6.4E-05 38.4 15.3 181 127-334 106-310 (668)
100 KOG2321 WD40 repeat protein [G 94.4 4.5 9.9E-05 38.1 16.6 96 127-230 154-261 (703)
101 COG3823 Glutamine cyclotransfe 94.3 2.5 5.3E-05 34.7 14.2 157 93-274 47-219 (262)
102 PRK00178 tolB translocation pr 94.2 4.7 0.0001 37.5 20.7 146 66-236 222-372 (430)
103 cd00094 HX Hemopexin-like repe 94.1 2.8 6E-05 34.3 16.4 95 159-265 62-176 (194)
104 COG4257 Vgb Streptogramin lyas 93.8 2.5 5.3E-05 36.3 12.5 119 97-239 195-317 (353)
105 smart00284 OLF Olfactomedin-li 93.5 4.3 9.3E-05 34.7 16.4 174 101-293 34-241 (255)
106 COG1520 FOG: WD40-like repeat 93.5 5.8 0.00013 36.1 17.9 153 155-328 64-227 (370)
107 TIGR02800 propeller_TolB tol-p 93.5 6.3 0.00014 36.4 20.9 146 66-236 213-363 (417)
108 PF09910 DUF2139: Uncharacteri 93.4 4.9 0.00011 34.9 19.4 174 81-265 27-231 (339)
109 PTZ00421 coronin; Provisional 93.3 7.6 0.00016 37.0 18.5 62 160-230 138-201 (493)
110 PLN00181 protein SPA1-RELATED; 93.2 11 0.00023 38.4 22.0 125 128-264 555-690 (793)
111 COG4257 Vgb Streptogramin lyas 93.1 5.2 0.00011 34.4 18.0 216 68-327 84-312 (353)
112 PRK13684 Ycf48-like protein; P 92.8 7.1 0.00015 35.1 21.7 192 76-295 75-278 (334)
113 PRK05137 tolB translocation pr 92.5 9.3 0.0002 35.7 19.7 133 127-265 181-323 (435)
114 KOG0315 G-protein beta subunit 92.3 6.3 0.00014 33.3 18.6 233 66-342 60-307 (311)
115 PF03178 CPSF_A: CPSF A subuni 92.2 2.7 5.8E-05 37.4 11.6 131 67-224 62-199 (321)
116 PRK04792 tolB translocation pr 92.2 10 0.00023 35.6 22.3 137 127-270 241-390 (448)
117 PF14870 PSII_BNR: Photosynthe 92.0 8.3 0.00018 34.0 20.4 209 55-295 71-294 (302)
118 PRK05137 tolB translocation pr 91.7 12 0.00025 35.1 21.1 145 66-234 225-373 (435)
119 COG4880 Secreted protein conta 91.3 11 0.00024 34.5 13.8 177 66-272 405-600 (603)
120 PRK03629 tolB translocation pr 91.2 13 0.00028 34.7 21.0 147 66-236 222-372 (429)
121 TIGR02800 propeller_TolB tol-p 91.2 12 0.00027 34.4 22.5 182 65-270 168-362 (417)
122 COG1520 FOG: WD40-like repeat 91.0 12 0.00026 34.1 20.4 198 98-329 65-279 (370)
123 PLN00181 protein SPA1-RELATED; 91.0 20 0.00043 36.5 22.0 168 66-264 554-738 (793)
124 PF08268 FBA_3: F-box associat 90.9 2.7 5.8E-05 31.8 8.9 58 157-216 3-62 (129)
125 smart00284 OLF Olfactomedin-li 90.7 10 0.00022 32.5 17.3 185 55-263 34-251 (255)
126 PLN02919 haloacid dehalogenase 90.4 26 0.00057 36.9 25.5 231 55-320 579-890 (1057)
127 PF10282 Lactonase: Lactonase, 90.2 14 0.00029 33.4 14.7 97 129-229 16-119 (345)
128 KOG1036 Mitotic spindle checkp 89.9 12 0.00027 32.5 17.4 126 128-265 35-164 (323)
129 PF08268 FBA_3: F-box associat 89.9 2.8 6.1E-05 31.7 8.2 81 205-327 2-87 (129)
130 TIGR03074 PQQ_membr_DH membran 89.8 5.4 0.00012 40.1 12.0 122 202-327 188-353 (764)
131 TIGR02658 TTQ_MADH_Hv methylam 89.4 16 0.00035 33.0 20.7 60 247-320 259-332 (352)
132 PF06433 Me-amine-dh_H: Methyl 89.0 14 0.0003 33.0 12.6 184 126-330 116-331 (342)
133 COG3823 Glutamine cyclotransfe 89.0 8.4 0.00018 31.7 10.3 160 153-332 49-219 (262)
134 KOG0289 mRNA splicing factor [ 88.6 16 0.00034 33.5 12.7 133 152-295 350-494 (506)
135 PLN02919 haloacid dehalogenase 87.9 40 0.00086 35.6 20.7 148 96-265 687-889 (1057)
136 KOG0646 WD40 repeat protein [G 87.4 22 0.00047 32.8 12.9 186 94-320 84-309 (476)
137 COG4946 Uncharacterized protei 87.3 25 0.00054 32.7 17.5 130 126-265 204-350 (668)
138 KOG0772 Uncharacterized conser 87.1 27 0.00058 32.8 13.9 119 148-274 315-455 (641)
139 PRK04922 tolB translocation pr 86.9 27 0.00058 32.6 19.3 137 175-329 227-377 (433)
140 PF02897 Peptidase_S9_N: Proly 86.6 24 0.00053 32.5 13.8 156 55-234 238-411 (414)
141 KOG0643 Translation initiation 85.8 22 0.00047 30.5 15.1 170 127-299 73-255 (327)
142 KOG0289 mRNA splicing factor [ 85.5 29 0.00064 31.8 15.7 120 92-237 348-472 (506)
143 KOG4378 Nuclear protein COP1 [ 85.0 34 0.00073 32.1 13.7 85 178-265 189-281 (673)
144 TIGR02658 TTQ_MADH_Hv methylam 84.3 32 0.00069 31.2 22.7 121 54-190 11-142 (352)
145 PRK02889 tolB translocation pr 83.4 39 0.00084 31.5 20.5 145 66-235 219-368 (427)
146 PF07433 DUF1513: Protein of u 83.3 31 0.00068 30.4 19.6 120 94-231 7-150 (305)
147 KOG0266 WD40 repeat-containing 82.8 43 0.00093 31.6 19.5 177 59-265 217-410 (456)
148 KOG0640 mRNA cleavage stimulat 82.4 20 0.00043 31.4 9.9 99 127-232 237-340 (430)
149 PRK00178 tolB translocation pr 82.2 43 0.00093 31.1 22.4 172 128-320 223-408 (430)
150 KOG0305 Anaphase promoting com 82.0 47 0.001 31.4 16.2 206 66-299 238-454 (484)
151 PLN00033 photosystem II stabil 81.9 43 0.00093 30.9 23.1 112 181-295 265-389 (398)
152 KOG0296 Angio-associated migra 81.8 38 0.00083 30.3 13.4 137 159-321 75-223 (399)
153 PRK04043 tolB translocation pr 81.8 45 0.00097 31.1 20.4 146 66-237 212-367 (419)
154 PRK03629 tolB translocation pr 81.6 46 0.00099 31.1 21.3 100 128-234 223-326 (429)
155 PRK02889 tolB translocation pr 81.1 47 0.001 30.9 20.8 156 55-234 164-323 (427)
156 PLN03215 ascorbic acid mannose 80.9 44 0.00096 30.4 17.4 99 76-197 189-307 (373)
157 KOG0316 Conserved WD40 repeat- 80.7 33 0.00072 28.9 16.4 142 55-229 71-215 (307)
158 KOG0263 Transcription initiati 80.2 18 0.00039 35.4 9.9 108 97-228 541-650 (707)
159 KOG0647 mRNA export protein (c 80.0 40 0.00088 29.5 14.5 130 66-223 93-224 (347)
160 PF02897 Peptidase_S9_N: Proly 79.6 51 0.0011 30.4 18.2 182 127-327 201-411 (414)
161 KOG0639 Transducin-like enhanc 78.4 43 0.00093 31.5 11.2 105 100-229 475-583 (705)
162 KOG0266 WD40 repeat-containing 78.3 61 0.0013 30.5 19.0 93 128-231 225-322 (456)
163 COG2706 3-carboxymuconate cycl 78.3 50 0.0011 29.5 13.9 158 55-236 156-332 (346)
164 PLN00033 photosystem II stabil 77.1 61 0.0013 29.9 23.5 194 76-295 119-346 (398)
165 KOG0294 WD40 repeat-containing 76.8 52 0.0011 29.0 17.0 155 128-297 63-228 (362)
166 cd00094 HX Hemopexin-like repe 76.8 39 0.00085 27.5 16.7 141 55-230 16-178 (194)
167 KOG1036 Mitotic spindle checkp 76.1 54 0.0012 28.7 13.2 133 66-230 34-166 (323)
168 PF13570 PQQ_3: PQQ-like domai 76.0 6.9 0.00015 22.5 3.9 24 241-264 15-39 (40)
169 KOG1188 WD40 repeat protein [G 75.7 44 0.00095 29.7 10.1 97 176-273 50-161 (376)
170 PF08662 eIF2A: Eukaryotic tra 74.5 42 0.0009 27.4 9.6 64 55-138 71-135 (194)
171 PF14583 Pectate_lyase22: Olig 74.5 54 0.0012 30.0 10.8 229 71-331 14-283 (386)
172 PF12217 End_beta_propel: Cata 73.7 58 0.0012 27.9 16.3 150 92-255 75-257 (367)
173 KOG4649 PQQ (pyrrolo-quinoline 73.3 59 0.0013 28.0 16.6 125 127-264 32-165 (354)
174 KOG2321 WD40 repeat protein [G 71.5 45 0.00097 31.9 9.7 105 57-187 147-261 (703)
175 KOG0306 WD40-repeat-containing 70.1 1.2E+02 0.0026 30.2 15.3 172 96-298 378-572 (888)
176 KOG1446 Histone H3 (Lys4) meth 68.6 82 0.0018 27.6 20.8 101 65-189 34-135 (311)
177 KOG3545 Olfactomedin and relat 68.3 74 0.0016 27.0 16.7 190 68-293 11-235 (249)
178 KOG0640 mRNA cleavage stimulat 68.2 57 0.0012 28.7 9.0 105 55-187 227-338 (430)
179 PRK01742 tolB translocation pr 67.9 1.1E+02 0.0023 28.6 17.6 141 66-235 227-369 (429)
180 KOG0281 Beta-TrCP (transducin 66.9 96 0.0021 27.8 10.4 40 3-42 73-116 (499)
181 PF14583 Pectate_lyase22: Olig 66.4 1.1E+02 0.0023 28.1 12.6 217 55-297 47-303 (386)
182 KOG0294 WD40 repeat-containing 66.1 94 0.002 27.5 9.9 109 185-293 28-144 (362)
183 KOG0647 mRNA export protein (c 65.7 95 0.0021 27.3 14.3 98 159-265 83-185 (347)
184 KOG1274 WD40 repeat protein [G 65.4 1.6E+02 0.0036 29.9 17.5 27 247-273 200-227 (933)
185 KOG0272 U4/U6 small nuclear ri 65.3 1.1E+02 0.0025 28.1 13.9 132 158-297 313-451 (459)
186 PTZ00420 coronin; Provisional 65.3 1.4E+02 0.003 29.1 20.1 61 161-230 139-200 (568)
187 TIGR03074 PQQ_membr_DH membran 64.7 1.7E+02 0.0036 29.8 18.9 168 152-327 187-431 (764)
188 PF07433 DUF1513: Protein of u 64.5 1E+02 0.0022 27.3 17.8 218 55-295 16-275 (305)
189 PTZ00421 coronin; Provisional 63.8 1.4E+02 0.003 28.6 16.8 150 58-233 140-296 (493)
190 KOG0274 Cdc4 and related F-box 63.5 1.5E+02 0.0032 28.8 19.1 169 127-320 310-484 (537)
191 KOG0315 G-protein beta subunit 62.9 98 0.0021 26.5 19.3 160 128-296 61-235 (311)
192 KOG4649 PQQ (pyrrolo-quinoline 62.3 1E+02 0.0022 26.6 17.4 124 58-214 24-153 (354)
193 KOG0283 WD40 repeat-containing 61.4 1.3E+02 0.0029 29.9 11.1 125 159-295 421-565 (712)
194 COG0823 TolB Periplasmic compo 61.1 1.3E+02 0.0029 28.1 11.0 109 64-193 259-368 (425)
195 KOG3545 Olfactomedin and relat 60.7 1.1E+02 0.0023 26.2 15.2 185 55-263 30-245 (249)
196 KOG0649 WD40 repeat protein [G 59.8 1.1E+02 0.0024 26.1 13.7 164 76-265 98-275 (325)
197 COG4880 Secreted protein conta 56.5 1.7E+02 0.0037 27.2 12.5 174 126-330 404-600 (603)
198 KOG1332 Vesicle coat complex C 56.4 1.3E+02 0.0028 25.7 11.1 25 210-234 176-200 (299)
199 KOG0318 WD40 repeat stress pro 55.4 1.9E+02 0.0042 27.5 20.7 103 206-320 452-562 (603)
200 KOG0286 G-protein beta subunit 53.9 1.5E+02 0.0033 25.9 20.9 203 93-336 99-317 (343)
201 PF06433 Me-amine-dh_H: Methyl 53.8 1.7E+02 0.0037 26.4 15.4 194 53-269 104-325 (342)
202 PF12217 End_beta_propel: Cata 53.5 69 0.0015 27.5 6.9 153 52-216 81-257 (367)
203 KOG4378 Nuclear protein COP1 [ 52.1 2.1E+02 0.0047 27.1 11.7 90 129-229 188-282 (673)
204 KOG0296 Angio-associated migra 51.7 1.9E+02 0.004 26.2 18.2 144 94-265 67-221 (399)
205 PF07734 FBA_1: F-box associat 51.5 1.2E+02 0.0025 23.9 8.9 59 156-215 2-64 (164)
206 PTZ00420 coronin; Provisional 51.5 2.4E+02 0.0053 27.5 18.5 102 210-319 139-249 (568)
207 COG0823 TolB Periplasmic compo 51.4 2.1E+02 0.0046 26.8 13.7 146 67-236 218-368 (425)
208 KOG4283 Transcription-coupled 51.0 1.2E+02 0.0026 26.6 8.1 59 159-235 55-113 (397)
209 KOG0293 WD40 repeat-containing 49.8 2.1E+02 0.0046 26.4 17.3 182 128-336 291-484 (519)
210 KOG0278 Serine/threonine kinas 49.8 1.7E+02 0.0036 25.1 12.9 83 129-221 206-291 (334)
211 KOG3881 Uncharacterized conser 49.7 2.1E+02 0.0045 26.2 10.0 140 161-320 162-322 (412)
212 PRK10115 protease 2; Provision 48.9 2.9E+02 0.0064 27.7 21.4 183 127-329 198-403 (686)
213 PF14781 BBS2_N: Ciliary BBSom 48.7 1.2E+02 0.0026 23.2 9.2 58 127-191 72-134 (136)
214 KOG0285 Pleiotropic regulator 48.0 2.1E+02 0.0046 25.9 18.0 226 55-327 162-397 (460)
215 COG2706 3-carboxymuconate cycl 47.6 2.1E+02 0.0046 25.7 24.9 239 55-329 51-332 (346)
216 KOG0291 WD40-repeat-containing 46.7 3.2E+02 0.0069 27.5 23.2 178 127-330 329-517 (893)
217 PRK10115 protease 2; Provision 46.4 3.2E+02 0.007 27.4 19.6 139 127-270 246-402 (686)
218 KOG0305 Anaphase promoting com 46.0 2.7E+02 0.0059 26.5 14.9 138 55-226 188-330 (484)
219 PF11134 Phage_stabilise: Phag 45.9 2.6E+02 0.0056 26.2 11.9 170 152-330 234-443 (469)
220 KOG0292 Vesicle coat complex C 45.4 3.6E+02 0.0079 27.8 12.2 117 127-265 229-349 (1202)
221 PRK02888 nitrous-oxide reducta 44.8 3.2E+02 0.007 27.0 11.2 174 127-320 151-353 (635)
222 KOG0649 WD40 repeat protein [G 44.6 2E+02 0.0044 24.6 13.2 138 55-225 126-272 (325)
223 PRK04043 tolB translocation pr 44.5 2.7E+02 0.0058 26.0 23.7 173 128-320 213-402 (419)
224 PF09910 DUF2139: Uncharacteri 44.3 2.3E+02 0.0049 25.1 16.1 140 152-293 39-219 (339)
225 KOG2315 Predicted translation 42.9 2.9E+02 0.0064 26.5 9.8 94 66-185 250-345 (566)
226 PF02239 Cytochrom_D1: Cytochr 42.5 2.7E+02 0.0058 25.4 10.3 105 55-186 48-160 (369)
227 KOG0265 U5 snRNP-specific prot 42.4 2.4E+02 0.0052 24.9 12.4 132 159-320 58-206 (338)
228 KOG0286 G-protein beta subunit 42.2 2.4E+02 0.0052 24.8 17.8 93 128-230 166-262 (343)
229 KOG1332 Vesicle coat complex C 41.2 2.3E+02 0.005 24.3 14.1 51 183-235 242-295 (299)
230 PF11768 DUF3312: Protein of u 39.8 1.3E+02 0.0028 28.8 7.3 94 126-229 234-331 (545)
231 KOG0263 Transcription initiati 38.8 3.1E+02 0.0067 27.3 9.7 104 55-185 545-650 (707)
232 PF08662 eIF2A: Eukaryotic tra 38.7 2.1E+02 0.0046 23.2 10.1 59 128-194 83-141 (194)
233 KOG0282 mRNA splicing factor [ 37.9 1.1E+02 0.0024 28.6 6.2 128 207-338 225-359 (503)
234 KOG1275 PAB-dependent poly(A) 37.4 1.8E+02 0.004 29.8 8.0 118 205-331 143-263 (1118)
235 KOG1445 Tumor-specific antigen 37.3 1.2E+02 0.0027 29.6 6.6 45 256-300 742-788 (1012)
236 COG3386 Gluconolactonase [Carb 37.2 3E+02 0.0065 24.4 21.3 162 129-297 86-277 (307)
237 PF15525 DUF4652: Domain of un 36.8 2.3E+02 0.005 23.1 9.0 73 66-150 87-162 (200)
238 KOG1523 Actin-related protein 36.5 3.1E+02 0.0068 24.4 8.9 90 175-266 31-135 (361)
239 PRK01742 tolB translocation pr 36.4 3.6E+02 0.0077 25.1 21.7 159 128-297 228-392 (429)
240 COG3940 Predicted beta-xylosid 36.4 2.5E+02 0.0054 23.3 8.5 113 140-254 58-210 (324)
241 KOG2048 WD40 repeat protein [G 36.3 4.3E+02 0.0094 26.0 21.3 82 127-216 224-308 (691)
242 PF13013 F-box-like_2: F-box-l 36.0 50 0.0011 24.2 3.2 29 5-33 22-50 (109)
243 KOG0308 Conserved WD40 repeat- 35.6 3.1E+02 0.0068 27.0 8.9 95 128-230 95-204 (735)
244 KOG1445 Tumor-specific antigen 35.4 4.5E+02 0.0098 26.0 10.0 90 176-267 150-251 (1012)
245 PF03088 Str_synth: Strictosid 35.4 1.6E+02 0.0034 20.7 6.0 20 217-236 35-54 (89)
246 KOG0643 Translation initiation 35.1 3E+02 0.0066 23.9 14.0 21 279-299 290-310 (327)
247 KOG1897 Damage-specific DNA bi 35.0 5.5E+02 0.012 26.9 15.9 117 129-255 810-931 (1096)
248 PF15525 DUF4652: Domain of un 33.5 2.7E+02 0.0058 22.8 10.1 84 125-211 85-175 (200)
249 PF06058 DCP1: Dcp1-like decap 33.3 53 0.0011 24.6 3.1 27 218-254 28-54 (122)
250 KOG2096 WD40 repeat protein [G 32.3 3.7E+02 0.008 24.0 8.3 53 245-298 195-250 (420)
251 KOG0278 Serine/threonine kinas 30.0 3.6E+02 0.0078 23.2 11.7 118 127-255 164-286 (334)
252 KOG4341 F-box protein containi 29.5 37 0.0008 31.3 1.9 35 7-41 74-108 (483)
253 smart00564 PQQ beta-propeller 28.8 97 0.0021 16.3 3.8 21 208-229 6-26 (33)
254 COG2152 Predicted glycosylase 28.7 4.2E+02 0.009 23.5 9.5 32 266-299 262-293 (314)
255 KOG2048 WD40 repeat protein [G 27.9 6.1E+02 0.013 25.1 20.9 44 65-110 45-89 (691)
256 KOG0279 G protein beta subunit 27.6 4.2E+02 0.0091 23.2 13.8 92 128-230 172-265 (315)
257 TIGR03032 conserved hypothetic 27.1 2E+02 0.0044 25.6 5.9 34 206-239 210-243 (335)
258 KOG0639 Transducin-like enhanc 26.6 1.8E+02 0.004 27.5 5.8 95 55-170 476-573 (705)
259 PF11134 Phage_stabilise: Phag 26.4 5.5E+02 0.012 24.1 14.4 54 54-110 191-250 (469)
260 KOG0272 U4/U6 small nuclear ri 25.8 5.4E+02 0.012 23.9 10.7 128 94-255 306-438 (459)
261 PF06079 Apyrase: Apyrase; In 25.7 4.1E+02 0.0089 23.3 7.4 53 241-293 57-116 (291)
262 KOG0282 mRNA splicing factor [ 25.2 2.5E+02 0.0053 26.4 6.3 62 159-230 269-333 (503)
263 COG3490 Uncharacterized protei 24.0 5.1E+02 0.011 22.9 9.8 83 129-214 92-178 (366)
264 KOG1538 Uncharacterized conser 23.3 7.6E+02 0.016 24.7 16.8 40 128-169 33-74 (1081)
265 KOG1900 Nuclear pore complex, 21.4 8.2E+02 0.018 26.6 9.7 87 7-109 66-156 (1311)
266 KOG2106 Uncharacterized conser 21.2 7.4E+02 0.016 23.8 20.4 101 55-182 213-314 (626)
267 KOG1517 Guanine nucleotide bin 21.1 8.9E+02 0.019 25.9 9.6 76 188-264 1154-1239(1387)
268 KOG0285 Pleiotropic regulator 20.7 6.5E+02 0.014 22.9 15.0 30 241-270 364-398 (460)
269 KOG1523 Actin-related protein 20.4 4.4E+02 0.0096 23.5 6.6 100 66-189 31-137 (361)
270 cd01206 Homer Homer type EVH1 20.4 2.8E+02 0.0061 20.3 4.6 20 126-145 9-29 (111)
271 KOG0318 WD40 repeat stress pro 20.4 7.8E+02 0.017 23.7 17.6 25 241-265 448-474 (603)
272 COG3292 Predicted periplasmic 20.4 8E+02 0.017 24.0 8.7 132 128-269 184-322 (671)
273 KOG2919 Guanine nucleotide-bin 20.3 6.4E+02 0.014 22.7 7.6 69 151-225 160-236 (406)
No 1
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=2.5e-45 Score=344.96 Aligned_cols=312 Identities=24% Similarity=0.415 Sum_probs=259.9
Q ss_pred CCChHHHHHHhhccCCCc--chhhHHHh--hHHHHHhhcC-hhhHHHHHhcC-CCCcEEEEEecCC-----CCeEEEEeC
Q 019186 6 EGLPDAVALRCLARVPFF--LHPKLELV--SRSWRAAIRS-PELFKARQEVG-SSENLLCVCAFDP-----ENLWQLYDP 74 (345)
Q Consensus 6 ~~lp~~~~~~~l~~~p~~--~~~~~~~~--~~~w~~~~~~-~~~~~~~~~~~-~~~~~l~v~gg~~-----~~~~~~yd~ 74 (345)
|-||+..+.++....+.. .......+ .+.|..+... +.++.++.... ...+.|+++||.. .+.++.|||
T Consensus 229 ~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~~~~~~~~~~~~~~~~~t~~r~~~~~~l~~vGG~~~~~~~~~~ve~yd~ 308 (571)
T KOG4441|consen 229 PLLPPQFLVEIVESEPLIKRDSACRDLLDEAKKYHLLPQRRPVMQSPRTRPRRSVSGKLVAVGGYNRQGQSLRSVECYDP 308 (571)
T ss_pred cCCCHHHHHHHHhhhhhhccCHHHHHHHHHHHHHhhCcccCccccCCCcccCcCCCCeEEEECCCCCCCcccceeEEecC
Confidence 567777777666665411 11111111 2244443221 11344444444 5678999999955 578999999
Q ss_pred CCCCEEeCCCCCccccccceeEEEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccCCCCCCCceeee
Q 019186 75 LRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPRASMLVPRAMFA 154 (345)
Q Consensus 75 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~ 154 (345)
.+++|..+++|+.+ |.++++++++|+||++||++.. ....+++++||+.+++|+.+++|..+|..++
T Consensus 309 ~~~~w~~~a~m~~~---r~~~~~~~~~~~lYv~GG~~~~----------~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~ 375 (571)
T KOG4441|consen 309 KTNEWSSLAPMPSP---RCRVGVAVLNGKLYVVGGYDSG----------SDRLSSVERYDPRTNQWTPVAPMNTKRSDFG 375 (571)
T ss_pred CcCcEeecCCCCcc---cccccEEEECCEEEEEccccCC----------CcccceEEEecCCCCceeccCCccCccccce
Confidence 99999999999987 8899999999999999998631 2268999999999999999999999999999
Q ss_pred eeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeEEEECCEEEEEec------CcceEEEEECCC
Q 019186 155 CCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHK------GLSTVQVLDHMG 228 (345)
Q Consensus 155 ~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~iyv~gG------~~~~i~~yd~~~ 228 (345)
+++++|.||++||.++. ..++++|.|||.+++|+.+++|+.. +.++++++++++||++|| ...++++|||.+
T Consensus 376 v~~l~g~iYavGG~dg~-~~l~svE~YDp~~~~W~~va~m~~~-r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t 453 (571)
T KOG4441|consen 376 VAVLDGKLYAVGGFDGE-KSLNSVECYDPVTNKWTPVAPMLTR-RSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPET 453 (571)
T ss_pred eEEECCEEEEEeccccc-cccccEEEecCCCCcccccCCCCcc-eeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCC
Confidence 99999999999999854 5688999999999999999999997 999999999999999999 568899999999
Q ss_pred CCeeeccCCCC---CCceEEEcCeEEEEeC-------cEEEEecCCc--eEEeccchhhcccceeEEEEECCeEEEEcce
Q 019186 229 LGWTVEDYGWL---QGPMAIVHDSVYLMSH-------GLIIKQHRDV--RKVVASASEFRRRIGFAMIGMGDDIYVIGGV 296 (345)
Q Consensus 229 ~~W~~~~~~~~---~~~~~~~~~~l~~~~~-------~~i~~~d~~~--W~~~~~~p~~~~r~~~~~~~~~~~l~i~GG~ 296 (345)
++|+.+++++. .+.+++++++||++|| ..+..||+++ |+.++.++ .+|..++++.+++++|++||+
T Consensus 454 ~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~--~~rs~~g~~~~~~~ly~vGG~ 531 (571)
T KOG4441|consen 454 NTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMT--SPRSAVGVVVLGGKLYAVGGF 531 (571)
T ss_pred CceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCc--cccccccEEEECCEEEEEecc
Confidence 99999998877 7889999999999999 4588999988 99998887 689999999999999999998
Q ss_pred ecCCCCcccccccCceeeeccCCCCCceeEcCCCCCcceeEEeeeeee
Q 019186 297 IGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGTILGCTQLR 344 (345)
Q Consensus 297 ~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~v~~~~~~r~~~~~~~~~~ 344 (345)
++. .+++.|++|||.++ +|..+.++...|.. ++|++++
T Consensus 532 ~~~-------~~l~~ve~ydp~~d--~W~~~~~~~~~~~~-~~~~~~~ 569 (571)
T KOG4441|consen 532 DGN-------NNLNTVECYDPETD--TWTEVTEPESGRGG-AGVAVIP 569 (571)
T ss_pred cCc-------cccceeEEcCCCCC--ceeeCCCccccccC-cceEEec
Confidence 887 58999999999999 99999995566665 6777665
No 2
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1e-40 Score=315.15 Aligned_cols=254 Identities=13% Similarity=0.194 Sum_probs=218.4
Q ss_pred cEEEEEecC---CCCeEEEEeCCCCCEEeCCCCCccccccceeEEEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEE
Q 019186 56 NLLCVCAFD---PENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWS 132 (345)
Q Consensus 56 ~~l~v~gg~---~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~ 132 (345)
..+++.||. ....+++||+.+++|..+++||.+ +.++++++++++|||+||..... ...+++++
T Consensus 258 ~~l~~~~g~~~~~~~~v~~yd~~~~~W~~l~~mp~~---r~~~~~a~l~~~IYviGG~~~~~----------~~~~~v~~ 324 (557)
T PHA02713 258 LCLVCHDTKYNVCNPCILVYNINTMEYSVISTIPNH---IINYASAIVDNEIIIAGGYNFNN----------PSLNKVYK 324 (557)
T ss_pred eEEEEecCccccCCCCEEEEeCCCCeEEECCCCCcc---ccceEEEEECCEEEEEcCCCCCC----------CccceEEE
Confidence 445555553 124688999999999999999987 77889999999999999974211 14678999
Q ss_pred EeCCCCCcccCCCCCCCceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeEEEECCEEE
Q 019186 133 YDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVH 212 (345)
Q Consensus 133 yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~iy 212 (345)
||+.+++|..+++|+.+|..+++++++++||++||.++. ...++++.|||.+++|+.+++||.+ +..+++++++++||
T Consensus 325 Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~-~~~~sve~Ydp~~~~W~~~~~mp~~-r~~~~~~~~~g~IY 402 (557)
T PHA02713 325 INIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGT-NVERTIECYTMGDDKWKMLPDMPIA-LSSYGMCVLDQYIY 402 (557)
T ss_pred EECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCC-CCCceEEEEECCCCeEEECCCCCcc-cccccEEEECCEEE
Confidence 999999999999999999999999999999999998643 3468899999999999999999999 88889999999999
Q ss_pred EEecC-----------------------cceEEEEECCCCCeeeccCCCC---CCceEEEcCeEEEEeC--------cEE
Q 019186 213 VLHKG-----------------------LSTVQVLDHMGLGWTVEDYGWL---QGPMAIVHDSVYLMSH--------GLI 258 (345)
Q Consensus 213 v~gG~-----------------------~~~i~~yd~~~~~W~~~~~~~~---~~~~~~~~~~l~~~~~--------~~i 258 (345)
++||. .+++++|||.+++|+.+++++. .+.+++++|+||++|| ..+
T Consensus 403 viGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~v 482 (557)
T PHA02713 403 IIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCI 482 (557)
T ss_pred EEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeE
Confidence 99992 3579999999999999988755 7788999999999998 247
Q ss_pred EEecCCc---eEEeccchhhcccceeEEEEECCeEEEEcceecCCCCcccccccCceeeeccCCCCCceeEcCCCCCcce
Q 019186 259 IKQHRDV---RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRG 335 (345)
Q Consensus 259 ~~~d~~~---W~~~~~~p~~~~r~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~v~~~~~~r~ 335 (345)
..|||++ |+.++++| .+|..+++++++|+||++||+++. ..+++||+.++ +|..+++.....+
T Consensus 483 e~Ydp~~~~~W~~~~~m~--~~r~~~~~~~~~~~iyv~Gg~~~~----------~~~e~yd~~~~--~W~~~~~~~~~~~ 548 (557)
T PHA02713 483 FRYNTNTYNGWELITTTE--SRLSALHTILHDNTIMMLHCYESY----------MLQDTFNVYTY--EWNHICHQHSNSY 548 (557)
T ss_pred EEecCCCCCCeeEccccC--cccccceeEEECCEEEEEeeecce----------eehhhcCcccc--cccchhhhcCCce
Confidence 8999974 99999998 689999999999999999998774 27899999999 9999988766555
Q ss_pred eEE
Q 019186 336 TIL 338 (345)
Q Consensus 336 ~~~ 338 (345)
-||
T Consensus 549 ~~~ 551 (557)
T PHA02713 549 IMH 551 (557)
T ss_pred Eee
Confidence 544
No 3
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=2.2e-36 Score=271.58 Aligned_cols=269 Identities=16% Similarity=0.236 Sum_probs=204.2
Q ss_pred HHHHHhhcCh-hhHHHHHhcC--CCCcEEEEEecCC------CCeEEEEeCCCCCEEeCCCCCcccc-ccceeEEEEECC
Q 019186 33 RSWRAAIRSP-ELFKARQEVG--SSENLLCVCAFDP------ENLWQLYDPLRDLWITLPVLPSKIR-HLAHFGVVSTAG 102 (345)
Q Consensus 33 ~~w~~~~~~~-~~~~~~~~~~--~~~~~l~v~gg~~------~~~~~~yd~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~ 102 (345)
..|..+.... ..|.+|..++ ..++.||++||.. .+++++||+.+++|+.+++++..+. .+..++++++++
T Consensus 7 ~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~ 86 (341)
T PLN02153 7 GGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGT 86 (341)
T ss_pred CeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECC
Confidence 3476664422 1344555443 4489999999952 3589999999999999987754221 234688899999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccCCCC-----CCCceeeeeeEeCCeEEEEcCcCCCC-----
Q 019186 103 KLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPRASM-----LVPRAMFACCALKEKIVVAGGFTSCR----- 172 (345)
Q Consensus 103 ~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~-----~~~r~~~~~~~~~~~iyv~gG~~~~~----- 172 (345)
+||||||..... ..+++++||+.+++|+.++++ |.+|..|++++.+++||++||.....
T Consensus 87 ~iyv~GG~~~~~-----------~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~ 155 (341)
T PLN02153 87 KLYIFGGRDEKR-----------EFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTP 155 (341)
T ss_pred EEEEECCCCCCC-----------ccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCC
Confidence 999999974322 367899999999999998876 78899999999999999999986321
Q ss_pred CCCceEEEEeCCCCceEeCCCCC---ccCCCceeEEEECCEEEEEecC-------------cceEEEEECCCCCeeeccC
Q 019186 173 KSISQAEMYDPEKDVWVPIPDLH---RTHNSACTGVVIGGKVHVLHKG-------------LSTVQVLDHMGLGWTVEDY 236 (345)
Q Consensus 173 ~~~~~v~~yd~~~~~W~~~~~~~---~~~~~~~~~~~~~~~iyv~gG~-------------~~~i~~yd~~~~~W~~~~~ 236 (345)
...+++++||+++++|+.++++. .+ |.++++++++++||++||. .+++++||+.+++|+.+..
T Consensus 156 ~~~~~v~~yd~~~~~W~~l~~~~~~~~~-r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~ 234 (341)
T PLN02153 156 ERFRTIEAYNIADGKWVQLPDPGENFEK-RGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVET 234 (341)
T ss_pred cccceEEEEECCCCeEeeCCCCCCCCCC-CCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccc
Confidence 13468999999999999998764 45 7788888999999999872 3679999999999998853
Q ss_pred C---C---CCCceEEEcCeEEEEeCc----------------EEEEecCCc--eEEeccc---hhhcccceeEEE-EE-C
Q 019186 237 G---W---LQGPMAIVHDSVYLMSHG----------------LIIKQHRDV--RKVVASA---SEFRRRIGFAMI-GM-G 287 (345)
Q Consensus 237 ~---~---~~~~~~~~~~~l~~~~~~----------------~i~~~d~~~--W~~~~~~---p~~~~r~~~~~~-~~-~ 287 (345)
. + ..+++++++++||++||. .++.||+++ |+++... +.+..+..++.+ +. +
T Consensus 235 ~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~ 314 (341)
T PLN02153 235 TGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGK 314 (341)
T ss_pred cCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCc
Confidence 1 2 256788899999999992 689999987 9998632 212334333333 33 4
Q ss_pred CeEEEEcceecCCCCcccccccCceeeeccCC
Q 019186 288 DDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGA 319 (345)
Q Consensus 288 ~~l~i~GG~~~~~~~~~~~~~~~~v~~yd~~~ 319 (345)
++|||+||.+... +.++|++.|++.+
T Consensus 315 ~~~~~~gG~~~~~------~~~~~~~~~~~~~ 340 (341)
T PLN02153 315 NGLLMHGGKLPTN------ERTDDLYFYAVNS 340 (341)
T ss_pred ceEEEEcCcCCCC------ccccceEEEeccc
Confidence 5899999987754 5778999998754
No 4
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.7e-36 Score=285.39 Aligned_cols=223 Identities=28% Similarity=0.483 Sum_probs=202.8
Q ss_pred EECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccCCCCCCCceeeeeeEeCCeEEEEcCcCCCCCCCceE
Q 019186 99 STAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQA 178 (345)
Q Consensus 99 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v 178 (345)
...+.||++||..... ...+.++.||+.+++|..+++|+.+|..+++++++++||++||.+.....++.+
T Consensus 282 ~~~~~l~~vGG~~~~~----------~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~v 351 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQG----------QSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSV 351 (571)
T ss_pred CCCCeEEEECCCCCCC----------cccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceE
Confidence 5668899999986422 257899999999999999999999999999999999999999998434568999
Q ss_pred EEEeCCCCceEeCCCCCccCCCceeEEEECCEEEEEec-----CcceEEEEECCCCCeeeccCCCC---CCceEEEcCeE
Q 019186 179 EMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHK-----GLSTVQVLDHMGLGWTVEDYGWL---QGPMAIVHDSV 250 (345)
Q Consensus 179 ~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~iyv~gG-----~~~~i~~yd~~~~~W~~~~~~~~---~~~~~~~~~~l 250 (345)
+.||+.+++|+.+++|..+ |..+++++++|.||++|| ..+++++||+.+++|+.++++.. .+.+++.+|+|
T Consensus 352 e~YD~~~~~W~~~a~M~~~-R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~i 430 (571)
T KOG4441|consen 352 ERYDPRTNQWTPVAPMNTK-RSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKL 430 (571)
T ss_pred EEecCCCCceeccCCccCc-cccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEE
Confidence 9999999999999999999 999999999999999999 67889999999999999988766 78889999999
Q ss_pred EEEeC--------cEEEEecCCc--eEEeccchhhcccceeEEEEECCeEEEEcceecCCCCcccccccCceeeeccCCC
Q 019186 251 YLMSH--------GLIIKQHRDV--RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE 320 (345)
Q Consensus 251 ~~~~~--------~~i~~~d~~~--W~~~~~~p~~~~r~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~yd~~~~ 320 (345)
|++|| ..+..|||.+ |+.+++|+ .+|.+++++.++++||++||+++. ..++.|+.|||.++
T Consensus 431 Yi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~--~~R~~~g~a~~~~~iYvvGG~~~~-------~~~~~VE~ydp~~~ 501 (571)
T KOG4441|consen 431 YIIGGGDGSSNCLNSVECYDPETNTWTLIAPMN--TRRSGFGVAVLNGKIYVVGGFDGT-------SALSSVERYDPETN 501 (571)
T ss_pred EEEcCcCCCccccceEEEEcCCCCceeecCCcc--cccccceEEEECCEEEEECCccCC-------CccceEEEEcCCCC
Confidence 99999 6899999988 99999998 699999999999999999999984 36678999999999
Q ss_pred CCceeEcCCCCCcceeEEeeeeee
Q 019186 321 RPTWRQVSPMTRCRGTILGCTQLR 344 (345)
Q Consensus 321 ~~~W~~v~~~~~~r~~~~~~~~~~ 344 (345)
+|..+++|+.+|.. +|++++.
T Consensus 502 --~W~~v~~m~~~rs~-~g~~~~~ 522 (571)
T KOG4441|consen 502 --QWTMVAPMTSPRSA-VGVVVLG 522 (571)
T ss_pred --ceeEcccCcccccc-ccEEEEC
Confidence 99999999999999 6887763
No 5
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=2.1e-35 Score=265.27 Aligned_cols=252 Identities=18% Similarity=0.238 Sum_probs=195.4
Q ss_pred CCCCCEEeCCC----CCccccccceeEEEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccCCCCC-C
Q 019186 74 PLRDLWITLPV----LPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPRASML-V 148 (345)
Q Consensus 74 ~~~~~W~~~~~----~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~-~ 148 (345)
+...+|.++.. +|.+ |..|++++++++|||+||..... ....+++++||+.+++|+.++++. .
T Consensus 4 ~~~~~W~~~~~~~~~~P~p---R~~h~~~~~~~~iyv~GG~~~~~---------~~~~~~~~~yd~~~~~W~~~~~~~~~ 71 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGP---RCSHGIAVVGDKLYSFGGELKPN---------EHIDKDLYVFDFNTHTWSIAPANGDV 71 (341)
T ss_pred ccCCeEEEecCCCCCCCCC---CCcceEEEECCEEEEECCccCCC---------CceeCcEEEEECCCCEEEEcCccCCC
Confidence 36778999977 4544 88999999999999999974211 113578999999999999987653 3
Q ss_pred Cc---eeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCC-----CccCCCceeEEEECCEEEEEecC---
Q 019186 149 PR---AMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDL-----HRTHNSACTGVVIGGKVHVLHKG--- 217 (345)
Q Consensus 149 ~r---~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~-----~~~~~~~~~~~~~~~~iyv~gG~--- 217 (345)
+| ..+++++++++||++||.... ...+++++||+++++|+.++++ |.+ |..+++++++++|||+||.
T Consensus 72 p~~~~~~~~~~~~~~~iyv~GG~~~~-~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~-R~~~~~~~~~~~iyv~GG~~~~ 149 (341)
T PLN02153 72 PRISCLGVRMVAVGTKLYIFGGRDEK-REFSDFYSYDTVKNEWTFLTKLDEEGGPEA-RTFHSMASDENHVYVFGGVSKG 149 (341)
T ss_pred CCCccCceEEEEECCEEEEECCCCCC-CccCcEEEEECCCCEEEEeccCCCCCCCCC-ceeeEEEEECCEEEEECCccCC
Confidence 33 367888999999999998754 3467899999999999999876 667 7888999999999999992
Q ss_pred --------cceEEEEECCCCCeeeccCCC---C---CCceEEEcCeEEEEeC---------------cEEEEecCCc--e
Q 019186 218 --------LSTVQVLDHMGLGWTVEDYGW---L---QGPMAIVHDSVYLMSH---------------GLIIKQHRDV--R 266 (345)
Q Consensus 218 --------~~~i~~yd~~~~~W~~~~~~~---~---~~~~~~~~~~l~~~~~---------------~~i~~~d~~~--W 266 (345)
.+++++||+++++|+.++... . .+.++.++++||+++| ..++.||+++ |
T Consensus 150 ~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W 229 (341)
T PLN02153 150 GLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKW 229 (341)
T ss_pred CccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcE
Confidence 247899999999999987542 1 5677889999999875 3588999987 9
Q ss_pred EEeccch-hhcccceeEEEEECCeEEEEcceecCC--CCcccccccCceeeeccCCCCCceeEcC-----CCCCcceeEE
Q 019186 267 KVVASAS-EFRRRIGFAMIGMGDDIYVIGGVIGPD--RWNWDIKPMSDVDVLTVGAERPTWRQVS-----PMTRCRGTIL 338 (345)
Q Consensus 267 ~~~~~~p-~~~~r~~~~~~~~~~~l~i~GG~~~~~--~~~~~~~~~~~v~~yd~~~~~~~W~~v~-----~~~~~r~~~~ 338 (345)
++++... .+.+|..|+++.++++||||||..... .+.......+++++||++++ +|.++. ++|..|.. +
T Consensus 230 ~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~--~W~~~~~~~~~~~pr~~~~-~ 306 (341)
T PLN02153 230 TEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL--VWEKLGECGEPAMPRGWTA-Y 306 (341)
T ss_pred EeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCcc--EEEeccCCCCCCCCCcccc-c
Confidence 9997532 236888999999999999999974321 11111145679999999999 999986 45665654 3
Q ss_pred eeee
Q 019186 339 GCTQ 342 (345)
Q Consensus 339 ~~~~ 342 (345)
++|.
T Consensus 307 ~~~~ 310 (341)
T PLN02153 307 TTAT 310 (341)
T ss_pred cccc
Confidence 4443
No 6
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=9.2e-35 Score=270.36 Aligned_cols=269 Identities=14% Similarity=0.158 Sum_probs=209.6
Q ss_pred CcEEEEEecCC---CCe--EEEEeCCC----CCEEeCCCCCccccccceeEEEEECCEEEEEcCCCCCCCCCCCCCCCCc
Q 019186 55 ENLLCVCAFDP---ENL--WQLYDPLR----DLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSF 125 (345)
Q Consensus 55 ~~~l~v~gg~~---~~~--~~~yd~~~----~~W~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ 125 (345)
+++|+.|+|.. .+. ++.+++.+ ++|.+++++...+.+|..|++++++++|||+||..... ..
T Consensus 120 ~~~ivgf~G~~~~~~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~---------~~ 190 (470)
T PLN02193 120 GGKIVGFHGRSTDVLHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPN---------QP 190 (470)
T ss_pred CCeEEEEeccCCCcEEeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCC---------CC
Confidence 78888888743 223 34457655 89999987533333599999999999999999974211 11
Q ss_pred CcCceEEEeCCCCCcccCCC---CCC-CceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCC---CccC
Q 019186 126 ATNEVWSYDPVTRQWSPRAS---MLV-PRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDL---HRTH 198 (345)
Q Consensus 126 ~~~~~~~yd~~t~~W~~~~~---~~~-~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~---~~~~ 198 (345)
..+++++||+.+++|+.++. +|. .|..+++++++++||++||.... ...+++++||+.+++|+.++++ |.+
T Consensus 191 ~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~-~~~ndv~~yD~~t~~W~~l~~~~~~P~~- 268 (470)
T PLN02193 191 IDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDAS-RQYNGFYSFDTTTNEWKLLTPVEEGPTP- 268 (470)
T ss_pred eeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCC-CCCccEEEEECCCCEEEEcCcCCCCCCC-
Confidence 34689999999999998764 333 35678889999999999998753 4578999999999999999887 677
Q ss_pred CCceeEEEECCEEEEEec-----CcceEEEEECCCCCeeeccCC------CCCCceEEEcCeEEEEeC------cEEEEe
Q 019186 199 NSACTGVVIGGKVHVLHK-----GLSTVQVLDHMGLGWTVEDYG------WLQGPMAIVHDSVYLMSH------GLIIKQ 261 (345)
Q Consensus 199 ~~~~~~~~~~~~iyv~gG-----~~~~i~~yd~~~~~W~~~~~~------~~~~~~~~~~~~l~~~~~------~~i~~~ 261 (345)
|..+++++++++||++|| ..+++++||+.+++|+.++.. +..+.+++++++||+++| ..++.|
T Consensus 269 R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~y 348 (470)
T PLN02193 269 RSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYY 348 (470)
T ss_pred ccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEE
Confidence 888898999999999999 356799999999999987642 116677889999999988 679999
Q ss_pred cCCc--eEEeccch-hhcccceeEEEEECCeEEEEcceecCCC--CcccccccCceeeeccCCCCCceeEcCCC------
Q 019186 262 HRDV--RKVVASAS-EFRRRIGFAMIGMGDDIYVIGGVIGPDR--WNWDIKPMSDVDVLTVGAERPTWRQVSPM------ 330 (345)
Q Consensus 262 d~~~--W~~~~~~p-~~~~r~~~~~~~~~~~l~i~GG~~~~~~--~~~~~~~~~~v~~yd~~~~~~~W~~v~~~------ 330 (345)
|+++ |++++.+. .+.+|..|+++.++++|||+||...... +.......+++++||+.++ +|.++..+
T Consensus 349 D~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~--~W~~~~~~~~~~~~ 426 (470)
T PLN02193 349 DPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETL--QWERLDKFGEEEET 426 (470)
T ss_pred ECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcC--EEEEcccCCCCCCC
Confidence 9987 99997652 2468999999999999999999864211 1111135679999999999 99999753
Q ss_pred CCccee
Q 019186 331 TRCRGT 336 (345)
Q Consensus 331 ~~~r~~ 336 (345)
|.+|..
T Consensus 427 P~~R~~ 432 (470)
T PLN02193 427 PSSRGW 432 (470)
T ss_pred CCCCcc
Confidence 566764
No 7
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=1.7e-35 Score=275.28 Aligned_cols=269 Identities=16% Similarity=0.191 Sum_probs=210.8
Q ss_pred hHHHHHhhcChhhHHHHHhcCC--CCcEEEEEecCC------CCeEEEEeCCCCCEEeCCCCCccc-cccceeEEEEECC
Q 019186 32 SRSWRAAIRSPELFKARQEVGS--SENLLCVCAFDP------ENLWQLYDPLRDLWITLPVLPSKI-RHLAHFGVVSTAG 102 (345)
Q Consensus 32 ~~~w~~~~~~~~~~~~~~~~~~--~~~~l~v~gg~~------~~~~~~yd~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~ 102 (345)
...|..+....+.|.+|..|+. .++.||++||.. .+++++||+.+++|+.++.+...+ ..+..++++++++
T Consensus 150 ~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~ 229 (470)
T PLN02193 150 LGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGS 229 (470)
T ss_pred hceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECC
Confidence 3678877554445556665543 489999999942 256999999999999887653221 1356788899999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccCCCC---CCCceeeeeeEeCCeEEEEcCcCCCCCCCceEE
Q 019186 103 KLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPRASM---LVPRAMFACCALKEKIVVAGGFTSCRKSISQAE 179 (345)
Q Consensus 103 ~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~---~~~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~ 179 (345)
+|||+||..... ..+++++||+.+++|++++++ |.+|..|++++.+++||++||.... ...++++
T Consensus 230 ~lYvfGG~~~~~-----------~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~-~~~~~~~ 297 (470)
T PLN02193 230 TLYVFGGRDASR-----------QYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSAT-ARLKTLD 297 (470)
T ss_pred EEEEECCCCCCC-----------CCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCC-CCcceEE
Confidence 999999975321 468999999999999999877 7889999999999999999998753 4468899
Q ss_pred EEeCCCCceEeCCC---CCccCCCceeEEEECCEEEEEec----CcceEEEEECCCCCeeeccCC---CC---CCceEEE
Q 019186 180 MYDPEKDVWVPIPD---LHRTHNSACTGVVIGGKVHVLHK----GLSTVQVLDHMGLGWTVEDYG---WL---QGPMAIV 246 (345)
Q Consensus 180 ~yd~~~~~W~~~~~---~~~~~~~~~~~~~~~~~iyv~gG----~~~~i~~yd~~~~~W~~~~~~---~~---~~~~~~~ 246 (345)
.||+.+++|+.++. ++.+ |..+++++++++||++|| ..+++++||+.+++|+.++.. +. .++++.+
T Consensus 298 ~yd~~t~~W~~~~~~~~~~~~-R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~ 376 (470)
T PLN02193 298 SYNIVDKKWFHCSTPGDSFSI-RGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAV 376 (470)
T ss_pred EEECCCCEEEeCCCCCCCCCC-CCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEE
Confidence 99999999998865 4555 778888899999999998 347899999999999988643 21 6778889
Q ss_pred cCeEEEEeC----------------cEEEEecCCc--eEEeccch----hhcccceeEEE--EE--CCeEEEEcceecCC
Q 019186 247 HDSVYLMSH----------------GLIIKQHRDV--RKVVASAS----EFRRRIGFAMI--GM--GDDIYVIGGVIGPD 300 (345)
Q Consensus 247 ~~~l~~~~~----------------~~i~~~d~~~--W~~~~~~p----~~~~r~~~~~~--~~--~~~l~i~GG~~~~~ 300 (345)
+++||++|| +.++.||+++ |+++..++ .+.+|..++++ .+ ++.++++||.....
T Consensus 377 ~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~ 456 (470)
T PLN02193 377 GKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPTN 456 (470)
T ss_pred CCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCcc
Confidence 999999999 1589999988 99987653 24567666432 23 34599999987654
Q ss_pred CCcccccccCceeeeccCC
Q 019186 301 RWNWDIKPMSDVDVLTVGA 319 (345)
Q Consensus 301 ~~~~~~~~~~~v~~yd~~~ 319 (345)
+.++|+|+|++.+
T Consensus 457 ------~~~~D~~~~~~~~ 469 (470)
T PLN02193 457 ------DRFDDLFFYGIDS 469 (470)
T ss_pred ------ccccceEEEecCC
Confidence 5789999998764
No 8
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=2.3e-35 Score=265.87 Aligned_cols=250 Identities=16% Similarity=0.155 Sum_probs=193.6
Q ss_pred CCCCcEEEEEecCCCCeEEEEeC--CCCCEEeCCCCCccccccceeEEEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCc
Q 019186 52 GSSENLLCVCAFDPENLWQLYDP--LRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNE 129 (345)
Q Consensus 52 ~~~~~~l~v~gg~~~~~~~~yd~--~~~~W~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~ 129 (345)
...++.|||+||...++++.||+ .+++|..+++||.. +|.++++++++++|||+||...... .......++
T Consensus 14 ~~~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~--~R~~~~~~~~~~~iYv~GG~~~~~~-----~~~~~~~~~ 86 (346)
T TIGR03547 14 AIIGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGG--PRNQAVAAAIDGKLYVFGGIGKANS-----EGSPQVFDD 86 (346)
T ss_pred EEECCEEEEEccccCCeeEEEECCCCCCCceECCCCCCC--CcccceEEEECCEEEEEeCCCCCCC-----CCcceeccc
Confidence 35599999999977788999996 67899999999842 3888999999999999999743210 001123678
Q ss_pred eEEEeCCCCCcccCC-CCCCCceeeeee-EeCCeEEEEcCcCCCC---------------------------------CC
Q 019186 130 VWSYDPVTRQWSPRA-SMLVPRAMFACC-ALKEKIVVAGGFTSCR---------------------------------KS 174 (345)
Q Consensus 130 ~~~yd~~t~~W~~~~-~~~~~r~~~~~~-~~~~~iyv~gG~~~~~---------------------------------~~ 174 (345)
+++||+.+++|+.++ .++..|..++++ +++++||++||..... ..
T Consensus 87 v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (346)
T TIGR03547 87 VYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFW 166 (346)
T ss_pred EEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCc
Confidence 999999999999997 456666667666 6899999999975310 01
Q ss_pred CceEEEEeCCCCceEeCCCCCccCCCceeEEEECCEEEEEecC------cceEEEEE--CCCCCeeeccCCCC-------
Q 019186 175 ISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKG------LSTVQVLD--HMGLGWTVEDYGWL------- 239 (345)
Q Consensus 175 ~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~iyv~gG~------~~~i~~yd--~~~~~W~~~~~~~~------- 239 (345)
.+.+++||+.+++|+.+++||...+..+++++++++|||+||. ...++.|| +.+++|+.++.++.
T Consensus 167 ~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~ 246 (346)
T TIGR03547 167 NKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQE 246 (346)
T ss_pred cceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccc
Confidence 3789999999999999999986437788888999999999992 23455565 56779999887643
Q ss_pred ---CCceEEEcCeEEEEeCc------------------------EEEEecCCc--eEEeccchhhcccceeEEEEECCeE
Q 019186 240 ---QGPMAIVHDSVYLMSHG------------------------LIIKQHRDV--RKVVASASEFRRRIGFAMIGMGDDI 290 (345)
Q Consensus 240 ---~~~~~~~~~~l~~~~~~------------------------~i~~~d~~~--W~~~~~~p~~~~r~~~~~~~~~~~l 290 (345)
.+.+++++++||++||. .+..||+++ |+.++.+| .+|..++++.++++|
T Consensus 247 ~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp--~~~~~~~~~~~~~~i 324 (346)
T TIGR03547 247 GLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLP--QGLAYGVSVSWNNGV 324 (346)
T ss_pred cccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCC--CCceeeEEEEcCCEE
Confidence 11256789999999982 355777766 99999988 578888888899999
Q ss_pred EEEcceecCCCCcccccccCceeeec
Q 019186 291 YVIGGVIGPDRWNWDIKPMSDVDVLT 316 (345)
Q Consensus 291 ~i~GG~~~~~~~~~~~~~~~~v~~yd 316 (345)
||+||.+..+ ...++|+.+.
T Consensus 325 yv~GG~~~~~------~~~~~v~~~~ 344 (346)
T TIGR03547 325 LLIGGENSGG------KAVTDVYLLS 344 (346)
T ss_pred EEEeccCCCC------CEeeeEEEEE
Confidence 9999987655 4667777653
No 9
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=3.6e-35 Score=279.39 Aligned_cols=255 Identities=18% Similarity=0.250 Sum_probs=213.0
Q ss_pred CcEEEEEecCC--CCeEEEEeCCCCCEEeCCCCCccccccceeEEEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEE
Q 019186 55 ENLLCVCAFDP--ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWS 132 (345)
Q Consensus 55 ~~~l~v~gg~~--~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~ 132 (345)
+..+++.+|.. ...+..|++.+++|..+++.+. +..+++++.+++||++||...... ..+++++
T Consensus 250 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~lyv~GG~~~~~~----------~~~~v~~ 315 (534)
T PHA03098 250 GSIIYIHITMSIFTYNYITNYSPLSEINTIIDIHY----VYCFGSVVLNNVIYFIGGMNKNNL----------SVNSVVS 315 (534)
T ss_pred CcceEeecccchhhceeeecchhhhhcccccCccc----cccceEEEECCEEEEECCCcCCCC----------eeccEEE
Confidence 34455544422 2345678888999998876653 345678889999999999854321 4578999
Q ss_pred EeCCCCCcccCCCCCCCceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeEEEECCEEE
Q 019186 133 YDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVH 212 (345)
Q Consensus 133 yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~iy 212 (345)
||+.+++|..+++++.+|..+++++++++||++||... ....++++.||+.+++|+.++++|.+ +..++++.++++||
T Consensus 316 yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~-~~~~~~v~~yd~~~~~W~~~~~lp~~-r~~~~~~~~~~~iY 393 (534)
T PHA03098 316 YDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYN-SISLNTVESWKPGESKWREEPPLIFP-RYNPCVVNVNNLIY 393 (534)
T ss_pred EeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCC-CEecceEEEEcCCCCceeeCCCcCcC-CccceEEEECCEEE
Confidence 99999999999999999999999999999999999874 34578899999999999999999999 88889999999999
Q ss_pred EEec------CcceEEEEECCCCCeeeccCCCC---CCceEEEcCeEEEEeC----------cEEEEecCCc--eEEecc
Q 019186 213 VLHK------GLSTVQVLDHMGLGWTVEDYGWL---QGPMAIVHDSVYLMSH----------GLIIKQHRDV--RKVVAS 271 (345)
Q Consensus 213 v~gG------~~~~i~~yd~~~~~W~~~~~~~~---~~~~~~~~~~l~~~~~----------~~i~~~d~~~--W~~~~~ 271 (345)
++|| ..+.+++||+.+++|+.+++++. .+.++..+++||++|| ..++.||+++ |++++.
T Consensus 394 v~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~ 473 (534)
T PHA03098 394 VIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSS 473 (534)
T ss_pred EECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCC
Confidence 9999 24679999999999999877665 6778889999999998 2389999987 999998
Q ss_pred chhhcccceeEEEEECCeEEEEcceecCCCCcccccccCceeeeccCCCCCceeEcCCCCCccee
Q 019186 272 ASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGT 336 (345)
Q Consensus 272 ~p~~~~r~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~v~~~~~~r~~ 336 (345)
++ .+|..++++.++++||++||.+.. ...+++++||+.++ +|..++++|.....
T Consensus 474 ~~--~~r~~~~~~~~~~~iyv~GG~~~~-------~~~~~v~~yd~~~~--~W~~~~~~p~~~~~ 527 (534)
T PHA03098 474 LN--FPRINASLCIFNNKIYVVGGDKYE-------YYINEIEVYDDKTN--TWTLFCKFPKVIGS 527 (534)
T ss_pred CC--cccccceEEEECCEEEEEcCCcCC-------cccceeEEEeCCCC--EEEecCCCcccccc
Confidence 87 578889999999999999998754 24679999999999 99999998876655
No 10
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=1.6e-34 Score=262.30 Aligned_cols=259 Identities=16% Similarity=0.183 Sum_probs=200.6
Q ss_pred cCCCCcEEEEEecCCCCeEEEEeCC--CCCEEeCCCCCccccccceeEEEEECCEEEEEcCCCCCCCCCCCCCCCCcCcC
Q 019186 51 VGSSENLLCVCAFDPENLWQLYDPL--RDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATN 128 (345)
Q Consensus 51 ~~~~~~~l~v~gg~~~~~~~~yd~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~ 128 (345)
....++.||++||...+.++.||+. +++|..++++|.. +|.++++++++++|||+||...... .......+
T Consensus 34 ~~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~--~r~~~~~v~~~~~IYV~GG~~~~~~-----~~~~~~~~ 106 (376)
T PRK14131 34 GAIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGG--PREQAVAAFIDGKLYVFGGIGKTNS-----EGSPQVFD 106 (376)
T ss_pred EEEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCC--CcccceEEEECCEEEEEcCCCCCCC-----CCceeEcc
Confidence 3445999999999777789999986 4789999988753 3888899999999999999753110 00112467
Q ss_pred ceEEEeCCCCCcccCCC-CCCCceeeeeeE-eCCeEEEEcCcCCC---------------------------------CC
Q 019186 129 EVWSYDPVTRQWSPRAS-MLVPRAMFACCA-LKEKIVVAGGFTSC---------------------------------RK 173 (345)
Q Consensus 129 ~~~~yd~~t~~W~~~~~-~~~~r~~~~~~~-~~~~iyv~gG~~~~---------------------------------~~ 173 (345)
++++||+.+++|+.+++ .+..+..+++++ .+++||++||.... ..
T Consensus 107 ~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~ 186 (376)
T PRK14131 107 DVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYF 186 (376)
T ss_pred cEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcC
Confidence 89999999999999985 356666777666 79999999997521 01
Q ss_pred CCceEEEEeCCCCceEeCCCCCccCCCceeEEEECCEEEEEec------CcceEE--EEECCCCCeeeccCCCCC-----
Q 019186 174 SISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHK------GLSTVQ--VLDHMGLGWTVEDYGWLQ----- 240 (345)
Q Consensus 174 ~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~iyv~gG------~~~~i~--~yd~~~~~W~~~~~~~~~----- 240 (345)
..+++++||+.+++|+.++++|...+.+++++.++++||++|| ....++ .||+++++|..++.++..
T Consensus 187 ~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~ 266 (376)
T PRK14131 187 FNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSS 266 (376)
T ss_pred cCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCc
Confidence 2478999999999999999998643778888899999999999 123333 457789999998876431
Q ss_pred ------CceEEEcCeEEEEeCc------------------------EEEEecCCc--eEEeccchhhcccceeEEEEECC
Q 019186 241 ------GPMAIVHDSVYLMSHG------------------------LIIKQHRDV--RKVVASASEFRRRIGFAMIGMGD 288 (345)
Q Consensus 241 ------~~~~~~~~~l~~~~~~------------------------~i~~~d~~~--W~~~~~~p~~~~r~~~~~~~~~~ 288 (345)
+.+++++++||++||. .+..||+++ |+.++.+| .+|..++++.+++
T Consensus 267 ~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp--~~r~~~~av~~~~ 344 (376)
T PRK14131 267 QEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELP--QGLAYGVSVSWNN 344 (376)
T ss_pred CCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCC--CCccceEEEEeCC
Confidence 1146789999999981 234678776 99999888 5788888899999
Q ss_pred eEEEEcceecCCCCcccccccCceeeeccCCCCCceeE
Q 019186 289 DIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQ 326 (345)
Q Consensus 289 ~l~i~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~ 326 (345)
+|||+||....+ ...++|++|++..+ ++..
T Consensus 345 ~iyv~GG~~~~~------~~~~~v~~~~~~~~--~~~~ 374 (376)
T PRK14131 345 GVLLIGGETAGG------KAVSDVTLLSWDGK--KLTV 374 (376)
T ss_pred EEEEEcCCCCCC------cEeeeEEEEEEcCC--EEEE
Confidence 999999976543 47789999999887 7754
No 11
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-35 Score=280.96 Aligned_cols=230 Identities=11% Similarity=0.154 Sum_probs=193.7
Q ss_pred hhHHHhhHHHHHhhcChhhHHHH--HhcCCCCcEEEEEecCC-----CCeEEEEeCCCCCEEeCCCCCccccccceeEEE
Q 019186 26 PKLELVSRSWRAAIRSPELFKAR--QEVGSSENLLCVCAFDP-----ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVV 98 (345)
Q Consensus 26 ~~~~~~~~~w~~~~~~~~~~~~~--~~~~~~~~~l~v~gg~~-----~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~ 98 (345)
..+++..+.|..+.. ++..+ .+....++.||++||.. .++++.|||.+++|.++++|+.+ |.+++++
T Consensus 275 ~~yd~~~~~W~~l~~---mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~---R~~~~~~ 348 (557)
T PHA02713 275 LVYNINTMEYSVIST---IPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKN---RCRFSLA 348 (557)
T ss_pred EEEeCCCCeEEECCC---CCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcch---hhceeEE
Confidence 345666778887743 33444 33455699999999942 46799999999999999999987 9999999
Q ss_pred EECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccCCCCCCCceeeeeeEeCCeEEEEcCcCCCC------
Q 019186 99 STAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSCR------ 172 (345)
Q Consensus 99 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~------ 172 (345)
+++|+||++||..+.. ..+++++|||.+++|+.+++|+.+|..+++++++++||++||.++..
T Consensus 349 ~~~g~IYviGG~~~~~-----------~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~ 417 (557)
T PHA02713 349 VIDDTIYAIGGQNGTN-----------VERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVH 417 (557)
T ss_pred EECCEEEEECCcCCCC-----------CCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccccc
Confidence 9999999999974321 46789999999999999999999999999999999999999986421
Q ss_pred -----------CCCceEEEEeCCCCceEeCCCCCccCCCceeEEEECCEEEEEecC------cceEEEEECCC-CCeeec
Q 019186 173 -----------KSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKG------LSTVQVLDHMG-LGWTVE 234 (345)
Q Consensus 173 -----------~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~iyv~gG~------~~~i~~yd~~~-~~W~~~ 234 (345)
...+.++.|||++++|+.+++|+.+ +..+++++++++||++||. .+.+++||+.+ ++|+.+
T Consensus 418 ~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~-r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~ 496 (557)
T PHA02713 418 HMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTG-TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELI 496 (557)
T ss_pred ccccccccccccccceEEEECCCCCeEeecCCCCcc-cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEc
Confidence 1257899999999999999999999 8888999999999999982 24579999999 899999
Q ss_pred cCCCC---CCceEEEcCeEEEEeC----cEEEEecCCc--eEEeccch
Q 019186 235 DYGWL---QGPMAIVHDSVYLMSH----GLIIKQHRDV--RKVVASAS 273 (345)
Q Consensus 235 ~~~~~---~~~~~~~~~~l~~~~~----~~i~~~d~~~--W~~~~~~p 273 (345)
++++. .+.+++++|+||++|| ..+..||+.+ |+.+++..
T Consensus 497 ~~m~~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~ 544 (557)
T PHA02713 497 TTTESRLSALHTILHDNTIMMLHCYESYMLQDTFNVYTYEWNHICHQH 544 (557)
T ss_pred cccCcccccceeEEECCEEEEEeeecceeehhhcCcccccccchhhhc
Confidence 88776 7888999999999999 4689999988 99987643
No 12
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=8e-34 Score=255.83 Aligned_cols=240 Identities=15% Similarity=0.162 Sum_probs=183.8
Q ss_pred CCCCCccccccceeEEEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeC--CCCCcccCCCCC-CCceeeeeeEe
Q 019186 82 LPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDP--VTRQWSPRASML-VPRAMFACCAL 158 (345)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~--~t~~W~~~~~~~-~~r~~~~~~~~ 158 (345)
+++||.+ +..+++++++++|||+||.. .+.+++||+ .+++|+.+++|+ .+|..++++++
T Consensus 1 ~~~lp~~---~~~~~~~~~~~~vyv~GG~~---------------~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~ 62 (346)
T TIGR03547 1 LPDLPVG---FKNGTGAIIGDKVYVGLGSA---------------GTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAI 62 (346)
T ss_pred CCCCCcc---ccCceEEEECCEEEEEcccc---------------CCeeEEEECCCCCCCceECCCCCCCCcccceEEEE
Confidence 3567765 77777888999999999962 357899996 578899999998 58999999999
Q ss_pred CCeEEEEcCcCCCC-----CCCceEEEEeCCCCceEeCC-CCCccCCCceeEE-EECCEEEEEecC--------------
Q 019186 159 KEKIVVAGGFTSCR-----KSISQAEMYDPEKDVWVPIP-DLHRTHNSACTGV-VIGGKVHVLHKG-------------- 217 (345)
Q Consensus 159 ~~~iyv~gG~~~~~-----~~~~~v~~yd~~~~~W~~~~-~~~~~~~~~~~~~-~~~~~iyv~gG~-------------- 217 (345)
+++||++||..... ..++++++||+.+++|+.++ ++|.. +.+++++ +++++||++||.
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~-~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~ 141 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVG-LLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSA 141 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCc-ccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhh
Confidence 99999999986321 24678999999999999997 35555 5566555 789999999993
Q ss_pred -------------------------cceEEEEECCCCCeeeccCCCC----CCceEEEcCeEEEEeC--------cEEEE
Q 019186 218 -------------------------LSTVQVLDHMGLGWTVEDYGWL----QGPMAIVHDSVYLMSH--------GLIIK 260 (345)
Q Consensus 218 -------------------------~~~i~~yd~~~~~W~~~~~~~~----~~~~~~~~~~l~~~~~--------~~i~~ 260 (345)
.+.+++||+.+++|+.+++++. .+.++.++++||++|| ..++.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 221 (346)
T TIGR03547 142 ADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQ 221 (346)
T ss_pred cCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEE
Confidence 1679999999999999987653 5667788999999998 12444
Q ss_pred --ecCCc--eEEeccchhhc-----ccceeEEEEECCeEEEEcceecCCCC----------cccccccCceeeeccCCCC
Q 019186 261 --QHRDV--RKVVASASEFR-----RRIGFAMIGMGDDIYVIGGVIGPDRW----------NWDIKPMSDVDVLTVGAER 321 (345)
Q Consensus 261 --~d~~~--W~~~~~~p~~~-----~r~~~~~~~~~~~l~i~GG~~~~~~~----------~~~~~~~~~v~~yd~~~~~ 321 (345)
+|+++ |++++.+|.+. .+..|.++.++++|||+||.+..+.. ......+..+++||++++
T Consensus 222 y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~- 300 (346)
T TIGR03547 222 YLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNG- 300 (346)
T ss_pred EEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCC-
Confidence 45553 99999987421 12456677899999999997632210 000012346899999999
Q ss_pred CceeEcCCCCCcceeEEeeeee
Q 019186 322 PTWRQVSPMTRCRGTILGCTQL 343 (345)
Q Consensus 322 ~~W~~v~~~~~~r~~~~~~~~~ 343 (345)
+|..+++||.+|.. ++++++
T Consensus 301 -~W~~~~~lp~~~~~-~~~~~~ 320 (346)
T TIGR03547 301 -KWSKVGKLPQGLAY-GVSVSW 320 (346)
T ss_pred -cccccCCCCCCcee-eEEEEc
Confidence 99999999999987 455443
No 13
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=3.3e-34 Score=267.33 Aligned_cols=205 Identities=19% Similarity=0.275 Sum_probs=179.1
Q ss_pred CCcEEEEEecCC----CCeEEEEeCCCCCEEeCCCCCccccccceeEEEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCc
Q 019186 54 SENLLCVCAFDP----ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNE 129 (345)
Q Consensus 54 ~~~~l~v~gg~~----~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~ 129 (345)
.++.||++||.. .+.++.|||.+++|..+++|+.+ |.++++++.+++||++||... .+.
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~---r~~~~~v~~~~~iYviGG~~~--------------~~s 332 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSP---RLYASGVPANNKLYVVGGLPN--------------PTS 332 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCch---hhcceEEEECCEEEEECCcCC--------------CCc
Confidence 578999999942 46789999999999999999986 888899999999999999632 246
Q ss_pred eEEEeCCCCCcccCCCCCCCceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeEEEECC
Q 019186 130 VWSYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGG 209 (345)
Q Consensus 130 ~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~ 209 (345)
+++||+.+++|+.+++|+.+|..+++++++++||++||.... .+.++.|||++++|+.+++|+.+ +..++++++++
T Consensus 333 ve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~~m~~~-r~~~~~~~~~~ 408 (480)
T PHA02790 333 VERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGPSTYYP-HYKSCALVFGR 408 (480)
T ss_pred eEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCCCCCCc-cccceEEEECC
Confidence 899999999999999999999999999999999999997643 36799999999999999999999 88888899999
Q ss_pred EEEEEecCcceEEEEECCCCCeeeccCCCCCCceEEEcCeEEEEeCcEEEEecCCceEEeccchhhcccceeEEEEECCe
Q 019186 210 KVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQGPMAIVHDSVYLMSHGLIIKQHRDVRKVVASASEFRRRIGFAMIGMGDD 289 (345)
Q Consensus 210 ~iyv~gG~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~d~~~W~~~~~~p~~~~r~~~~~~~~~~~ 289 (345)
+||++|| ..++||+++++|+.+++ ++ .+|..++++.++|+
T Consensus 409 ~IYv~GG---~~e~ydp~~~~W~~~~~-----------------------------------m~--~~r~~~~~~v~~~~ 448 (480)
T PHA02790 409 RLFLVGR---NAEFYCESSNTWTLIDD-----------------------------------PI--YPRDNPELIIVDNK 448 (480)
T ss_pred EEEEECC---ceEEecCCCCcEeEcCC-----------------------------------CC--CCccccEEEEECCE
Confidence 9999997 36889999999998753 23 57889999999999
Q ss_pred EEEEcceecCCCCcccccccCceeeeccCCCCCceeEcC
Q 019186 290 IYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVS 328 (345)
Q Consensus 290 l~i~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~v~ 328 (345)
||++||.+.. ..++.|++|||.++ +|....
T Consensus 449 IYviGG~~~~-------~~~~~ve~Yd~~~~--~W~~~~ 478 (480)
T PHA02790 449 LLLIGGFYRG-------SYIDTIEVYNNRTY--SWNIWD 478 (480)
T ss_pred EEEECCcCCC-------cccceEEEEECCCC--eEEecC
Confidence 9999998643 24578999999999 997654
No 14
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=1.4e-33 Score=251.61 Aligned_cols=233 Identities=15% Similarity=0.207 Sum_probs=189.0
Q ss_pred CCCCcEEEEEecCCC--------------CeEEEEe-CCCC-CEEeCCCCCccccccceeEEEEECCEEEEEcCCCCCCC
Q 019186 52 GSSENLLCVCAFDPE--------------NLWQLYD-PLRD-LWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVD 115 (345)
Q Consensus 52 ~~~~~~l~v~gg~~~--------------~~~~~yd-~~~~-~W~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~ 115 (345)
+..++.||++||... ++++.|+ +..+ +|..+++||.+ |.++++++++++||++||.....
T Consensus 10 ~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~---r~~~~~~~~~~~lyviGG~~~~~- 85 (323)
T TIGR03548 10 GIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYE---AAYGASVSVENGIYYIGGSNSSE- 85 (323)
T ss_pred eEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCcc---ccceEEEEECCEEEEEcCCCCCC-
Confidence 345899999999432 2566674 4333 79999999876 77777888899999999974322
Q ss_pred CCCCCCCCCcCcCceEEEeCCCCCc----ccCCCCCCCceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCceEeC
Q 019186 116 PLTGDQDGSFATNEVWSYDPVTRQW----SPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPI 191 (345)
Q Consensus 116 ~~~~~~~~~~~~~~~~~yd~~t~~W----~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~ 191 (345)
..+++++||+.+++| +.++++|.+|..+++++++++||++||..+. ...+++++||+++++|+.+
T Consensus 86 ----------~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~-~~~~~v~~yd~~~~~W~~~ 154 (323)
T TIGR03548 86 ----------RFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNG-KPSNKSYLFNLETQEWFEL 154 (323)
T ss_pred ----------CceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCC-ccCceEEEEcCCCCCeeEC
Confidence 467899999999998 7889999999999999999999999997543 3478999999999999999
Q ss_pred CCCCccCCCceeEEEECCEEEEEecC----cceEEEEECCCCCeeeccCCC-----C----CCceEEEcCeEEEEeC---
Q 019186 192 PDLHRTHNSACTGVVIGGKVHVLHKG----LSTVQVLDHMGLGWTVEDYGW-----L----QGPMAIVHDSVYLMSH--- 255 (345)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~iyv~gG~----~~~i~~yd~~~~~W~~~~~~~-----~----~~~~~~~~~~l~~~~~--- 255 (345)
+++|...|..+++++++++||++||. ..++++||+++++|+.++.+. . .+.++..+++||++||
T Consensus 155 ~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~ 234 (323)
T TIGR03548 155 PDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNK 234 (323)
T ss_pred CCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCH
Confidence 99885337788888999999999992 346789999999999987642 1 1223445799999998
Q ss_pred ------------------------------------cEEEEecCCc--eEEeccchhhcccceeEEEEECCeEEEEccee
Q 019186 256 ------------------------------------GLIIKQHRDV--RKVVASASEFRRRIGFAMIGMGDDIYVIGGVI 297 (345)
Q Consensus 256 ------------------------------------~~i~~~d~~~--W~~~~~~p~~~~r~~~~~~~~~~~l~i~GG~~ 297 (345)
..++.||+++ |+.++++| ..+|..++++.++++||++||..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p-~~~r~~~~~~~~~~~iyv~GG~~ 313 (323)
T TIGR03548 235 DVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSP-FFARCGAALLLTGNNIFSINGEL 313 (323)
T ss_pred HHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccccc-ccccCchheEEECCEEEEEeccc
Confidence 1489999987 99999776 24788899999999999999987
Q ss_pred cCC
Q 019186 298 GPD 300 (345)
Q Consensus 298 ~~~ 300 (345)
..+
T Consensus 314 ~pg 316 (323)
T TIGR03548 314 KPG 316 (323)
T ss_pred cCC
Confidence 665
No 15
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=5.5e-32 Score=245.72 Aligned_cols=244 Identities=15% Similarity=0.154 Sum_probs=183.7
Q ss_pred CEEeCCCCCccccccceeEEEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCC--CCCcccCCCCC-CCceeee
Q 019186 78 LWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPV--TRQWSPRASML-VPRAMFA 154 (345)
Q Consensus 78 ~W~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~--t~~W~~~~~~~-~~r~~~~ 154 (345)
.++.+++||.+ +..+++++++++|||+||.. .+.+++||+. +++|..+++++ .+|..++
T Consensus 18 ~~~~l~~lP~~---~~~~~~~~~~~~iyv~gG~~---------------~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~ 79 (376)
T PRK14131 18 NAEQLPDLPVP---FKNGTGAIDNNTVYVGLGSA---------------GTSWYKLDLNAPSKGWTKIAAFPGGPREQAV 79 (376)
T ss_pred ecccCCCCCcC---ccCCeEEEECCEEEEEeCCC---------------CCeEEEEECCCCCCCeEECCcCCCCCcccce
Confidence 35678888876 66667888999999999962 2458899986 47899999987 5899999
Q ss_pred eeEeCCeEEEEcCcCC-C----CCCCceEEEEeCCCCceEeCCC-CCccCCCceeEEE-ECCEEEEEecC----------
Q 019186 155 CCALKEKIVVAGGFTS-C----RKSISQAEMYDPEKDVWVPIPD-LHRTHNSACTGVV-IGGKVHVLHKG---------- 217 (345)
Q Consensus 155 ~~~~~~~iyv~gG~~~-~----~~~~~~v~~yd~~~~~W~~~~~-~~~~~~~~~~~~~-~~~~iyv~gG~---------- 217 (345)
+++++++||++||... . ...++++++||+.+++|+.+++ .|.. +.++++++ ++++||++||.
T Consensus 80 ~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~-~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~ 158 (376)
T PRK14131 80 AAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVG-LAGHVAVSLHNGKAYITGGVNKNIFDGYFE 158 (376)
T ss_pred EEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCc-ccceEEEEeeCCEEEEECCCCHHHHHHHHh
Confidence 9999999999999864 1 1235789999999999999985 3555 55566665 89999999992
Q ss_pred -----------------------------cceEEEEECCCCCeeeccCCCC----CCceEEEcCeEEEEeC--------c
Q 019186 218 -----------------------------LSTVQVLDHMGLGWTVEDYGWL----QGPMAIVHDSVYLMSH--------G 256 (345)
Q Consensus 218 -----------------------------~~~i~~yd~~~~~W~~~~~~~~----~~~~~~~~~~l~~~~~--------~ 256 (345)
.+.+++||+.+++|+.+++++. .++++.++++||++|| .
T Consensus 159 d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~ 238 (376)
T PRK14131 159 DLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTD 238 (376)
T ss_pred hhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCCh
Confidence 2579999999999999876653 5667788999999998 2
Q ss_pred EE--EEecCCc--eEEeccchhhc----c--cceeEEEEECCeEEEEcceecCCCC----------cccccccCceeeec
Q 019186 257 LI--IKQHRDV--RKVVASASEFR----R--RIGFAMIGMGDDIYVIGGVIGPDRW----------NWDIKPMSDVDVLT 316 (345)
Q Consensus 257 ~i--~~~d~~~--W~~~~~~p~~~----~--r~~~~~~~~~~~l~i~GG~~~~~~~----------~~~~~~~~~v~~yd 316 (345)
.+ +.||+++ |++++.+|.+. + +..+.++.++++|||+||.+..... .........+++||
T Consensus 239 ~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd 318 (376)
T PRK14131 239 AVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYA 318 (376)
T ss_pred hheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEE
Confidence 23 3456654 99999887321 1 1223356789999999997542210 00001123578999
Q ss_pred cCCCCCceeEcCCCCCcceeEEeeeee
Q 019186 317 VGAERPTWRQVSPMTRCRGTILGCTQL 343 (345)
Q Consensus 317 ~~~~~~~W~~v~~~~~~r~~~~~~~~~ 343 (345)
++++ +|..+++||.+|.. ++++++
T Consensus 319 ~~~~--~W~~~~~lp~~r~~-~~av~~ 342 (376)
T PRK14131 319 LVNG--KWQKVGELPQGLAY-GVSVSW 342 (376)
T ss_pred ecCC--cccccCcCCCCccc-eEEEEe
Confidence 9999 99999999999987 566554
No 16
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=1.8e-31 Score=238.06 Aligned_cols=246 Identities=14% Similarity=0.045 Sum_probs=184.7
Q ss_pred cceeEEEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEe-CCC-CCcccCCCCCCCceeeeeeEeCCeEEEEcCcC
Q 019186 92 LAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYD-PVT-RQWSPRASMLVPRAMFACCALKEKIVVAGGFT 169 (345)
Q Consensus 92 ~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd-~~t-~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~ 169 (345)
+..+.++++++.|||+||.+....++. ........+++++|+ +.. .+|..+++||.+|..+++++++++||++||..
T Consensus 4 ~~g~~~~~~~~~l~v~GG~~~~~~~~~-~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~ 82 (323)
T TIGR03548 4 VAGCYAGIIGDYILVAGGCNFPEDPLA-EGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGSN 82 (323)
T ss_pred eeeEeeeEECCEEEEeeccCCCCCchh-hCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCCC
Confidence 667778889999999999854321110 011223467888886 332 26999999999998888889999999999987
Q ss_pred CCCCCCceEEEEeCCCCce----EeCCCCCccCCCceeEEEECCEEEEEec-----CcceEEEEECCCCCeeeccCCCC-
Q 019186 170 SCRKSISQAEMYDPEKDVW----VPIPDLHRTHNSACTGVVIGGKVHVLHK-----GLSTVQVLDHMGLGWTVEDYGWL- 239 (345)
Q Consensus 170 ~~~~~~~~v~~yd~~~~~W----~~~~~~~~~~~~~~~~~~~~~~iyv~gG-----~~~~i~~yd~~~~~W~~~~~~~~- 239 (345)
+. ..+++++.||+.+++| +.++++|.+ +..+++++++++||++|| ..+++++||+++++|+.+++++.
T Consensus 83 ~~-~~~~~v~~~d~~~~~w~~~~~~~~~lp~~-~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~ 160 (323)
T TIGR03548 83 SS-ERFSSVYRITLDESKEELICETIGNLPFT-FENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGE 160 (323)
T ss_pred CC-CCceeEEEEEEcCCceeeeeeEcCCCCcC-ccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCC
Confidence 53 4478999999999987 788999999 778888999999999999 35789999999999999876542
Q ss_pred ---CCceEEEcCeEEEEeC------cEEEEecCCc--eEEeccchh---hcccceeE-EEEECCeEEEEcceecCCCC--
Q 019186 240 ---QGPMAIVHDSVYLMSH------GLIIKQHRDV--RKVVASASE---FRRRIGFA-MIGMGDDIYVIGGVIGPDRW-- 302 (345)
Q Consensus 240 ---~~~~~~~~~~l~~~~~------~~i~~~d~~~--W~~~~~~p~---~~~r~~~~-~~~~~~~l~i~GG~~~~~~~-- 302 (345)
.+.++.++++||++|| ..++.||+++ |++++.++. +..+..++ ++..+++|||+||.+.....
T Consensus 161 ~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~ 240 (323)
T TIGR03548 161 PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDA 240 (323)
T ss_pred CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHH
Confidence 5566789999999998 3578999987 999987641 22333333 44557999999998642100
Q ss_pred -----------------------cccccccCceeeeccCCCCCceeEcCCCC-CcceeEEeeeee
Q 019186 303 -----------------------NWDIKPMSDVDVLTVGAERPTWRQVSPMT-RCRGTILGCTQL 343 (345)
Q Consensus 303 -----------------------~~~~~~~~~v~~yd~~~~~~~W~~v~~~~-~~r~~~~~~~~~ 343 (345)
.......+++++||+.++ +|..++++| .+|.. ++++++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~~r~~-~~~~~~ 302 (323)
T TIGR03548 241 VIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTG--KWKSIGNSPFFARCG-AALLLT 302 (323)
T ss_pred HhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCC--eeeEcccccccccCc-hheEEE
Confidence 000123468999999999 999999998 46665 444443
No 17
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=8.3e-32 Score=256.31 Aligned_cols=208 Identities=17% Similarity=0.259 Sum_probs=181.9
Q ss_pred CCCCcEEEEEecCC-----CCeEEEEeCCCCCEEeCCCCCccccccceeEEEEECCEEEEEcCCCCCCCCCCCCCCCCcC
Q 019186 52 GSSENLLCVCAFDP-----ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFA 126 (345)
Q Consensus 52 ~~~~~~l~v~gg~~-----~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~ 126 (345)
...++.||++||.. .++++.||+.+++|..+++++.+ |.++++++.+++||++||..... .
T Consensus 291 ~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~---R~~~~~~~~~~~lyv~GG~~~~~-----------~ 356 (534)
T PHA03098 291 VVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYP---RKNPGVTVFNNRIYVIGGIYNSI-----------S 356 (534)
T ss_pred EEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcc---cccceEEEECCEEEEEeCCCCCE-----------e
Confidence 34589999999943 35789999999999999999876 88999999999999999975321 4
Q ss_pred cCceEEEeCCCCCcccCCCCCCCceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeEEE
Q 019186 127 TNEVWSYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVV 206 (345)
Q Consensus 127 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~ 206 (345)
.+++++||+.+++|+..++++.+|..+++++++++||++||.......++.++.||+.+++|+.++++|.+ +.+++++.
T Consensus 357 ~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~-r~~~~~~~ 435 (534)
T PHA03098 357 LNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPIS-HYGGCAIY 435 (534)
T ss_pred cceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcc-ccCceEEE
Confidence 67899999999999999999999999999999999999999765445578999999999999999999998 88888899
Q ss_pred ECCEEEEEecC--------cceEEEEECCCCCeeeccCCCC---CCceEEEcCeEEEEeC-------cEEEEecCCc--e
Q 019186 207 IGGKVHVLHKG--------LSTVQVLDHMGLGWTVEDYGWL---QGPMAIVHDSVYLMSH-------GLIIKQHRDV--R 266 (345)
Q Consensus 207 ~~~~iyv~gG~--------~~~i~~yd~~~~~W~~~~~~~~---~~~~~~~~~~l~~~~~-------~~i~~~d~~~--W 266 (345)
++++||++||. .+.+++||+.+++|+.++..+. .+.++.++++||++|| ..++.||+++ |
T Consensus 436 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 436 HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred ECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 99999999992 3459999999999999976554 6677889999999998 4789999988 9
Q ss_pred EEeccchh
Q 019186 267 KVVASASE 274 (345)
Q Consensus 267 ~~~~~~p~ 274 (345)
+.++.+|.
T Consensus 516 ~~~~~~p~ 523 (534)
T PHA03098 516 TLFCKFPK 523 (534)
T ss_pred EecCCCcc
Confidence 99988873
No 18
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=2.6e-31 Score=215.26 Aligned_cols=237 Identities=14% Similarity=0.230 Sum_probs=196.9
Q ss_pred ccceeEEEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccCCC-------------CCCCceeeeeeE
Q 019186 91 HLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPRAS-------------MLVPRAMFACCA 157 (345)
Q Consensus 91 ~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~-------------~~~~r~~~~~~~ 157 (345)
+|-+|+++.++.+||-|||+....+ -.....-++.++|..+-+|+++++ .|..|++|+++.
T Consensus 13 rRVNHAavaVG~riYSFGGYCsGed------y~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~ 86 (392)
T KOG4693|consen 13 RRVNHAAVAVGSRIYSFGGYCSGED------YDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVE 86 (392)
T ss_pred ccccceeeeecceEEecCCcccccc------cccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEE
Confidence 4888999999999999999854322 222245689999999999998764 345699999999
Q ss_pred eCCeEEEEcCcCCCCCCCceEEEEeCCCCceEeC---CCCCccCCCceeEEEECCEEEEEec-------CcceEEEEECC
Q 019186 158 LKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPI---PDLHRTHNSACTGVVIGGKVHVLHK-------GLSTVQVLDHM 227 (345)
Q Consensus 158 ~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~---~~~~~~~~~~~~~~~~~~~iyv~gG-------~~~~i~~yd~~ 227 (345)
+++++|+-||.++.....+.++.||++++.|.+. .-+|.+ |.++++++.++.+|++|| ..++++.+|..
T Consensus 87 y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPga-RDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~ 165 (392)
T KOG4693|consen 87 YQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGA-RDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFA 165 (392)
T ss_pred EcceEEEEcCccCcccccceeeeeccccccccccceeeecCCc-cCCceeeEECcEEEEecChHHHHHhhhccceeEecc
Confidence 9999999999998777889999999999999865 346777 999999999999999999 67889999999
Q ss_pred CCCeeeccC---CCC---CCceEEEcCeEEEEeC----------------cEEEEecCCc--eEEeccchh-hcccceeE
Q 019186 228 GLGWTVEDY---GWL---QGPMAIVHDSVYLMSH----------------GLIIKQHRDV--RKVVASASE-FRRRIGFA 282 (345)
Q Consensus 228 ~~~W~~~~~---~~~---~~~~~~~~~~l~~~~~----------------~~i~~~d~~~--W~~~~~~p~-~~~r~~~~ 282 (345)
+.+|+.+.. .+. .+++.++++.+|++|| ..|..+|..+ |..-++-+. +..|..|+
T Consensus 166 TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS 245 (392)
T KOG4693|consen 166 TMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHS 245 (392)
T ss_pred ceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccc
Confidence 999998742 222 7888889999999998 6788899888 998765543 46788999
Q ss_pred EEEECCeEEEEcceecCCCCcccccccCceeeeccCCCCCceeEc---CCCCCcceeEEeeeee
Q 019186 283 MIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQV---SPMTRCRGTILGCTQL 343 (345)
Q Consensus 283 ~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~v---~~~~~~r~~~~~~~~~ 343 (345)
+.+.++++|+|||+++.=. ...+|+|.|||.+. .|..| +..|.+|++ .|+++
T Consensus 246 ~fvYng~~Y~FGGYng~ln-----~HfndLy~FdP~t~--~W~~I~~~Gk~P~aRRR--qC~~v 300 (392)
T KOG4693|consen 246 TFVYNGKMYMFGGYNGTLN-----VHFNDLYCFDPKTS--MWSVISVRGKYPSARRR--QCSVV 300 (392)
T ss_pred eEEEcceEEEecccchhhh-----hhhcceeecccccc--hheeeeccCCCCCcccc--eeEEE
Confidence 9999999999999987532 46789999999998 99998 457899886 55554
No 19
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.98 E-value=1.1e-30 Score=211.63 Aligned_cols=234 Identities=17% Similarity=0.227 Sum_probs=193.0
Q ss_pred CCcEEEEEecC---------CCCeEEEEeCCCCCEEeCCCC----------CccccccceeEEEEECCEEEEEcCCCCCC
Q 019186 54 SENLLCVCAFD---------PENLWQLYDPLRDLWITLPVL----------PSKIRHLAHFGVVSTAGKLFVLGGGSDAV 114 (345)
Q Consensus 54 ~~~~l~v~gg~---------~~~~~~~yd~~~~~W~~~~~~----------~~~~~~~~~~~~~~~~~~lyv~GG~~~~~ 114 (345)
.+..||-|||. ..-++.++|..+-+|.++++- |..+.-|..|+++.+++++||.||.+++.
T Consensus 22 VG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~e 101 (392)
T KOG4693|consen 22 VGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDE 101 (392)
T ss_pred ecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcc
Confidence 48899999981 244788899999999998761 11123488999999999999999997644
Q ss_pred CCCCCCCCCCcCcCceEEEeCCCCCcccCC---CCCCCceeeeeeEeCCeEEEEcCcCC-CCCCCceEEEEeCCCCceEe
Q 019186 115 DPLTGDQDGSFATNEVWSYDPVTRQWSPRA---SMLVPRAMFACCALKEKIVVAGGFTS-CRKSISQAEMYDPEKDVWVP 190 (345)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~---~~~~~r~~~~~~~~~~~iyv~gG~~~-~~~~~~~v~~yd~~~~~W~~ 190 (345)
+ ..+.++.|||++++|.+.. ..|.+|.+|++|+.++.+|++||+.. ...+.++++++|..|.+|+.
T Consensus 102 g----------aCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~ 171 (392)
T KOG4693|consen 102 G----------ACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWRE 171 (392)
T ss_pred c----------ccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeee
Confidence 3 6889999999999998753 57899999999999999999999973 34567899999999999998
Q ss_pred CCC---CCccCCCceeEEEECCEEEEEec--------------CcceEEEEECCCCCeeeccCCCC------CCceEEEc
Q 019186 191 IPD---LHRTHNSACTGVVIGGKVHVLHK--------------GLSTVQVLDHMGLGWTVEDYGWL------QGPMAIVH 247 (345)
Q Consensus 191 ~~~---~~~~~~~~~~~~~~~~~iyv~gG--------------~~~~i~~yd~~~~~W~~~~~~~~------~~~~~~~~ 247 (345)
+.. +|.= |.++++.++++.+|++|| .-.+|..+|++++.|...+.... .+++-+.|
T Consensus 172 ~~Tkg~Pprw-RDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYn 250 (392)
T KOG4693|consen 172 MHTKGDPPRW-RDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYN 250 (392)
T ss_pred hhccCCCchh-hhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEc
Confidence 854 3444 789999999999999999 45678899999999998654332 78889999
Q ss_pred CeEEEEeC---------cEEEEecCCc--eEEeccch-hhcccceeEEEEECCeEEEEcceec
Q 019186 248 DSVYLMSH---------GLIIKQHRDV--RKVVASAS-EFRRRIGFAMIGMGDDIYVIGGVIG 298 (345)
Q Consensus 248 ~~l~~~~~---------~~i~~~d~~~--W~~~~~~p-~~~~r~~~~~~~~~~~l~i~GG~~~ 298 (345)
++||++|| .++|.|||.+ |..+..-. -+.+|..+..++.++++|+|||...
T Consensus 251 g~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGTsP 313 (392)
T KOG4693|consen 251 GKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGGTSP 313 (392)
T ss_pred ceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEEEecCCCC
Confidence 99999998 8999999998 99985322 1357777888889999999999754
No 20
>PHA02790 Kelch-like protein; Provisional
Probab=99.97 E-value=5.1e-29 Score=232.50 Aligned_cols=177 Identities=15% Similarity=0.257 Sum_probs=153.1
Q ss_pred EEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccCCCCCCCceeeeeeEeCCeEEEEcCcCCCCCCCc
Q 019186 97 VVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSIS 176 (345)
Q Consensus 97 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~~~~ 176 (345)
.+..++.||++||..+. ...+++++||+.+++|..+++|+.+|..+++++++++||++||..+ ..
T Consensus 267 ~~~~~~~lyviGG~~~~-----------~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~----~~ 331 (480)
T PHA02790 267 STHVGEVVYLIGGWMNN-----------EIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPN----PT 331 (480)
T ss_pred eEEECCEEEEEcCCCCC-----------CcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCC----CC
Confidence 44589999999997432 1467899999999999999999999999999999999999999753 25
Q ss_pred eEEEEeCCCCceEeCCCCCccCCCceeEEEECCEEEEEec---CcceEEEEECCCCCeeeccCCCCCCceEEEcCeEEEE
Q 019186 177 QAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHK---GLSTVQVLDHMGLGWTVEDYGWLQGPMAIVHDSVYLM 253 (345)
Q Consensus 177 ~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~iyv~gG---~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~l~~~ 253 (345)
.++.||+.+++|+.+++||.+ +..+++++++|+||++|| ..+.+++||+++++|+.++++
T Consensus 332 sve~ydp~~n~W~~~~~l~~~-r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m---------------- 394 (480)
T PHA02790 332 SVERWFHGDAAWVNMPSLLKP-RCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPST---------------- 394 (480)
T ss_pred ceEEEECCCCeEEECCCCCCC-CcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCC----------------
Confidence 699999999999999999999 888899999999999999 335688999999999987532
Q ss_pred eCcEEEEecCCceEEeccchhhcccceeEEEEECCeEEEEcceecCCCCcccccccCceeeeccCCCCCceeEcCCCCCc
Q 019186 254 SHGLIIKQHRDVRKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRC 333 (345)
Q Consensus 254 ~~~~i~~~d~~~W~~~~~~p~~~~r~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~v~~~~~~ 333 (345)
+ .+|..++++.++++||++|| .+++|||+++ +|..+++||.+
T Consensus 395 -------------------~--~~r~~~~~~~~~~~IYv~GG---------------~~e~ydp~~~--~W~~~~~m~~~ 436 (480)
T PHA02790 395 -------------------Y--YPHYKSCALVFGRRLFLVGR---------------NAEFYCESSN--TWTLIDDPIYP 436 (480)
T ss_pred -------------------C--CccccceEEEECCEEEEECC---------------ceEEecCCCC--cEeEcCCCCCC
Confidence 2 57888899999999999998 2478999999 99999999999
Q ss_pred ceeEEeeeeee
Q 019186 334 RGTILGCTQLR 344 (345)
Q Consensus 334 r~~~~~~~~~~ 344 (345)
|.. +++|++.
T Consensus 437 r~~-~~~~v~~ 446 (480)
T PHA02790 437 RDN-PELIIVD 446 (480)
T ss_pred ccc-cEEEEEC
Confidence 998 6777653
No 21
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.95 E-value=5.4e-27 Score=200.75 Aligned_cols=272 Identities=16% Similarity=0.221 Sum_probs=194.2
Q ss_pred CChHHHHHHhhccCCCcchhhHHHhhHHHHHhhcChhhHHHHHhcCC--CCcEEEEEecC--------CCCeEEEEeCCC
Q 019186 7 GLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELFKARQEVGS--SENLLCVCAFD--------PENLWQLYDPLR 76 (345)
Q Consensus 7 ~lp~~~~~~~l~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~--~~~~l~v~gg~--------~~~~~~~yd~~~ 76 (345)
.|-++.|.+|+..+-.+......- ....|+.++.+..+.. -.+.|++|||. ..+++|.||..+
T Consensus 35 e~de~~i~~~iq~~eaK~~e~~~e-------~~~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~ 107 (521)
T KOG1230|consen 35 ELDEADIAEIIQSLEAKQIEHVVE-------TSVPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKK 107 (521)
T ss_pred ccchHHHHHHHHhhhhhccceeee-------ccCCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccc
Confidence 455667777887776655321100 0011222233322221 25689999983 278999999999
Q ss_pred CCEEeCCCCCccccccceeEEEEE-CCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccCC--CCCCCceee
Q 019186 77 DLWITLPVLPSKIRHLAHFGVVST-AGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPRA--SMLVPRAMF 153 (345)
Q Consensus 77 ~~W~~~~~~~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~--~~~~~r~~~ 153 (345)
++|+++.....| ++|+.|.++++ .|.+|+|||.....+ +-.+....++|.||+.+++|+++. --|.+|++|
T Consensus 108 ~eWkk~~spn~P-~pRsshq~va~~s~~l~~fGGEfaSPn-----q~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGH 181 (521)
T KOG1230|consen 108 NEWKKVVSPNAP-PPRSSHQAVAVPSNILWLFGGEFASPN-----QEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGH 181 (521)
T ss_pred cceeEeccCCCc-CCCccceeEEeccCeEEEeccccCCcc-----hhhhhhhhheeeeeeccchheeeccCCCCCCCccc
Confidence 999999765544 45777776666 489999999865443 234456789999999999999975 458899999
Q ss_pred eeeEeCCeEEEEcCcCCC---CCCCceEEEEeCCCCceEeCCC---CCccCCCceeEEEE-CCEEEEEec----------
Q 019186 154 ACCALKEKIVVAGGFTSC---RKSISQAEMYDPEKDVWVPIPD---LHRTHNSACTGVVI-GGKVHVLHK---------- 216 (345)
Q Consensus 154 ~~~~~~~~iyv~gG~~~~---~~~~~~v~~yd~~~~~W~~~~~---~~~~~~~~~~~~~~-~~~iyv~gG---------- 216 (345)
.+++.+.+|++|||..+. ..+.+++++||+.+-+|+++.+ -|.+ |++++.++. +|.|||.||
T Consensus 182 RMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~Ptp-RSGcq~~vtpqg~i~vyGGYsK~~~kK~~ 260 (521)
T KOG1230|consen 182 RMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTP-RSGCQFSVTPQGGIVVYGGYSKQRVKKDV 260 (521)
T ss_pred eeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCC-CCcceEEecCCCcEEEEcchhHhhhhhhh
Confidence 999999999999998743 3457899999999999999865 3667 888888877 999999999
Q ss_pred ----CcceEEEEECCCC---CeeeccCCCCCCceEEEcCeEEEEeCcEEEEecCCceEEeccch-hhcccceeEEEEE-C
Q 019186 217 ----GLSTVQVLDHMGL---GWTVEDYGWLQGPMAIVHDSVYLMSHGLIIKQHRDVRKVVASAS-EFRRRIGFAMIGM-G 287 (345)
Q Consensus 217 ----~~~~i~~yd~~~~---~W~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~d~~~W~~~~~~p-~~~~r~~~~~~~~-~ 287 (345)
..++++..++..+ +|+ |+++.+.- .+.+|.++++++. +
T Consensus 261 dKG~~hsDmf~L~p~~~~~dKw~---------------------------------W~kvkp~g~kPspRsgfsv~va~n 307 (521)
T KOG1230|consen 261 DKGTRHSDMFLLKPEDGREDKWV---------------------------------WTKVKPSGVKPSPRSGFSVAVAKN 307 (521)
T ss_pred hcCceeeeeeeecCCcCCCccee---------------------------------EeeccCCCCCCCCCCceeEEEecC
Confidence 3344445554441 111 55554432 2578999999888 5
Q ss_pred CeEEEEcceecCC--CCcccccccCceeeeccCCCCCceeEc
Q 019186 288 DDIYVIGGVIGPD--RWNWDIKPMSDVDVLTVGAERPTWRQV 327 (345)
Q Consensus 288 ~~l~i~GG~~~~~--~~~~~~~~~~~v~~yd~~~~~~~W~~v 327 (345)
++-+.|||+.... .......+.+|++.||++.+ +|...
T Consensus 308 ~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~n--rW~~~ 347 (521)
T KOG1230|consen 308 HKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRN--RWSEG 347 (521)
T ss_pred CceEEecceecccccchhhhhhhhhhhhheecccc--hhhHh
Confidence 5999999986522 22223478999999999999 99876
No 22
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.94 E-value=4.1e-25 Score=205.26 Aligned_cols=243 Identities=23% Similarity=0.325 Sum_probs=197.9
Q ss_pred hhhHHHHHhcCCC--CcEEEEEecCC----CC--eEEEEeCCCCCEEeCCCCCccccccceeEEEEECCEEEEEcCCCCC
Q 019186 42 PELFKARQEVGSS--ENLLCVCAFDP----EN--LWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDA 113 (345)
Q Consensus 42 ~~~~~~~~~~~~~--~~~l~v~gg~~----~~--~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~ 113 (345)
...+..|..|... ++.+|++||.. .. +++++|..+..|.........+.++..|++++++++||+|||....
T Consensus 55 ~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~ 134 (482)
T KOG0379|consen 55 GVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKK 134 (482)
T ss_pred CCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCC
Confidence 3456667666543 99999999832 22 5999999999998876665555679999999999999999998642
Q ss_pred CCCCCCCCCCCcCcCceEEEeCCCCCcccCC---CCCCCceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCceEe
Q 019186 114 VDPLTGDQDGSFATNEVWSYDPVTRQWSPRA---SMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVP 190 (345)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~---~~~~~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~ 190 (345)
.. ..++++.||+.|++|+.+. ..|.+|..|+++++++++|++||........+++++||+++.+|.+
T Consensus 135 ~~----------~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~ 204 (482)
T KOG0379|consen 135 YR----------NLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSE 204 (482)
T ss_pred CC----------ChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeecccccccee
Confidence 22 4789999999999998754 5688999999999999999999998766678999999999999998
Q ss_pred CC---CCCccCCCceeEEEECCEEEEEec------CcceEEEEECCCCCeeeccCCCCCCceEEEcCeEEEEeCcEEEEe
Q 019186 191 IP---DLHRTHNSACTGVVIGGKVHVLHK------GLSTVQVLDHMGLGWTVEDYGWLQGPMAIVHDSVYLMSHGLIIKQ 261 (345)
Q Consensus 191 ~~---~~~~~~~~~~~~~~~~~~iyv~gG------~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ 261 (345)
+. ..|.+ |.+|+.++++++++++|| ..++++++|+.+.+|..+...
T Consensus 205 ~~~~g~~P~p-R~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~------------------------ 259 (482)
T KOG0379|consen 205 LDTQGEAPSP-RYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTG------------------------ 259 (482)
T ss_pred cccCCCCCCC-CCCceEEEECCeEEEEeccccCCceecceEeeecccceeeecccc------------------------
Confidence 73 46677 999999999999999988 578899999999999966421
Q ss_pred cCCceEEeccchhhcccceeEEEEECCeEEEEcceecCCCCcccccccCceeeeccCCCCCceeEcCCC----CCccee
Q 019186 262 HRDVRKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPM----TRCRGT 336 (345)
Q Consensus 262 d~~~W~~~~~~p~~~~r~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~v~~~----~~~r~~ 336 (345)
..+| .+|..|.++..+++++++||...... ..+.+++.||..++ .|.++..+ |.+|..
T Consensus 260 --------g~~p--~~R~~h~~~~~~~~~~l~gG~~~~~~-----~~l~~~~~l~~~~~--~w~~~~~~~~~~~~~~~~ 321 (482)
T KOG0379|consen 260 --------GDLP--SPRSGHSLTVSGDHLLLFGGGTDPKQ-----EPLGDLYGLDLETL--VWSKVESVGVVRPSPRLG 321 (482)
T ss_pred --------CCCC--CCcceeeeEEECCEEEEEcCCccccc-----cccccccccccccc--ceeeeecccccccccccc
Confidence 2333 68999999989999999999766410 26789999999988 99998544 444444
No 23
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.91 E-value=9e-23 Score=189.67 Aligned_cols=199 Identities=22% Similarity=0.347 Sum_probs=164.8
Q ss_pred cccceeEEEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccCC---CCCCCceeeeeeEeCCeEEEEc
Q 019186 90 RHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPRA---SMLVPRAMFACCALKEKIVVAG 166 (345)
Q Consensus 90 ~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~---~~~~~r~~~~~~~~~~~iyv~g 166 (345)
..|..|+++.+++++|||||...... ....+++++|..+..|.... ..|.+|.+|++++++++||++|
T Consensus 59 ~~R~~hs~~~~~~~~~vfGG~~~~~~---------~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfG 129 (482)
T KOG0379|consen 59 IPRAGHSAVLIGNKLYVFGGYGSGDR---------LTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFG 129 (482)
T ss_pred chhhccceeEECCEEEEECCCCCCCc---------cccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEc
Confidence 34999999999999999999854322 11116999999999998754 5678999999999999999999
Q ss_pred CcCCCCCCCceEEEEeCCCCceEeCC---CCCccCCCceeEEEECCEEEEEec------CcceEEEEECCCCCeeeccCC
Q 019186 167 GFTSCRKSISQAEMYDPEKDVWVPIP---DLHRTHNSACTGVVIGGKVHVLHK------GLSTVQVLDHMGLGWTVEDYG 237 (345)
Q Consensus 167 G~~~~~~~~~~v~~yd~~~~~W~~~~---~~~~~~~~~~~~~~~~~~iyv~gG------~~~~i~~yd~~~~~W~~~~~~ 237 (345)
|........++++.||+.|.+|..+. .+|.+ |.+|+++++++++||+|| ..+++++||+.+.+|.++..
T Consensus 130 G~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~-r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~- 207 (482)
T KOG0379|consen 130 GTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPP-RAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDT- 207 (482)
T ss_pred cccCCCCChhheEeccCCCCcEEEecCcCCCCCC-cccceEEEECCEEEEECCccCcccceeeeeeeccccccceeccc-
Confidence 99865566889999999999998774 45677 899999999999999999 47889999999999998842
Q ss_pred CCCCceEEEcCeEEEEeCcEEEEecCCceEEeccchhhcccceeEEEEECCeEEEEcceecCCCCcccccccCceeeecc
Q 019186 238 WLQGPMAIVHDSVYLMSHGLIIKQHRDVRKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTV 317 (345)
Q Consensus 238 ~~~~~~~~~~~~l~~~~~~~i~~~d~~~W~~~~~~p~~~~r~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~yd~ 317 (345)
.... +.+|.+|+++.++++++++||.+... .+++|+|.+|+
T Consensus 208 -------------------------------~g~~--P~pR~gH~~~~~~~~~~v~gG~~~~~------~~l~D~~~ldl 248 (482)
T KOG0379|consen 208 -------------------------------QGEA--PSPRYGHAMVVVGNKLLVFGGGDDGD------VYLNDVHILDL 248 (482)
T ss_pred -------------------------------CCCC--CCCCCCceEEEECCeEEEEeccccCC------ceecceEeeec
Confidence 1222 36899999999999999999988433 59999999999
Q ss_pred CCCCCceeEcC---CCCCcceeEEeee
Q 019186 318 GAERPTWRQVS---PMTRCRGTILGCT 341 (345)
Q Consensus 318 ~~~~~~W~~v~---~~~~~r~~~~~~~ 341 (345)
.+. +|.++. +.|.+|.. |..+
T Consensus 249 ~~~--~W~~~~~~g~~p~~R~~-h~~~ 272 (482)
T KOG0379|consen 249 STW--EWKLLPTGGDLPSPRSG-HSLT 272 (482)
T ss_pred ccc--eeeeccccCCCCCCcce-eeeE
Confidence 998 999764 57899987 4443
No 24
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.91 E-value=3.1e-24 Score=183.98 Aligned_cols=294 Identities=16% Similarity=0.191 Sum_probs=210.6
Q ss_pred chhhHHHhhHHHHHhhcChhhHHHHHhcCCC---CcEEEEEecC----------CCCeEEEEeCCCCCEEeCCCCCcccc
Q 019186 24 LHPKLELVSRSWRAAIRSPELFKARQEVGSS---ENLLCVCAFD----------PENLWQLYDPLRDLWITLPVLPSKIR 90 (345)
Q Consensus 24 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~---~~~l~v~gg~----------~~~~~~~yd~~~~~W~~~~~~~~~~~ 90 (345)
.+..+..-.+.|+.+ .+|+-|.+|++|++. .+.+++|||. ...++|.||..+++|+++.....| .
T Consensus 99 dLy~Yn~k~~eWkk~-~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~P-S 176 (521)
T KOG1230|consen 99 DLYSYNTKKNEWKKV-VSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGP-S 176 (521)
T ss_pred eeeEEeccccceeEe-ccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCC-C
Confidence 344555667889876 667778888877653 6899999993 266899999999999999765544 5
Q ss_pred ccceeEEEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccCCC---CCCCceeeeeeEe-CCeEEEEc
Q 019186 91 HLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPRAS---MLVPRAMFACCAL-KEKIVVAG 166 (345)
Q Consensus 91 ~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~---~~~~r~~~~~~~~-~~~iyv~g 166 (345)
+|+.|.|+++..+|++|||+.+.. ....+.|++|+||+.|-+|.++.+ -|.+|+++++.+. ++.|||.|
T Consensus 177 ~RSGHRMvawK~~lilFGGFhd~n-------r~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyG 249 (521)
T KOG1230|consen 177 PRSGHRMVAWKRQLILFGGFHDSN-------RDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYG 249 (521)
T ss_pred CCccceeEEeeeeEEEEcceecCC-------CceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEc
Confidence 699999999999999999986542 466689999999999999998754 3789999999999 99999999
Q ss_pred CcCC--------CCCCCceEEEEeCCC-----CceEeCCC---CCccCCCceeEEEE-CCEEEEEec-------------
Q 019186 167 GFTS--------CRKSISQAEMYDPEK-----DVWVPIPD---LHRTHNSACTGVVI-GGKVHVLHK------------- 216 (345)
Q Consensus 167 G~~~--------~~~~~~~v~~yd~~~-----~~W~~~~~---~~~~~~~~~~~~~~-~~~iyv~gG------------- 216 (345)
|++. .+..+.+++..++++ -.|..+.+ .|.+ |.+.++++. +++-+.+||
T Consensus 250 GYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPsp-Rsgfsv~va~n~kal~FGGV~D~eeeeEsl~g 328 (521)
T KOG1230|consen 250 GYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSP-RSGFSVAVAKNHKALFFGGVCDLEEEEESLSG 328 (521)
T ss_pred chhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCC-CCceeEEEecCCceEEecceecccccchhhhh
Confidence 9972 234568999999998 57888855 4666 777777665 568999999
Q ss_pred -CcceEEEEECCCCCeeeccC----CC---C----------------------------CCceEEEcCeEEEEeC-----
Q 019186 217 -GLSTVQVLDHMGLGWTVEDY----GW---L----------------------------QGPMAIVHDSVYLMSH----- 255 (345)
Q Consensus 217 -~~~~i~~yd~~~~~W~~~~~----~~---~----------------------------~~~~~~~~~~l~~~~~----- 255 (345)
..++++.||+..++|....- .+ . ....+...+.+++..+
T Consensus 329 ~F~NDLy~fdlt~nrW~~~qlq~~~S~~~~~r~~~Kd~~k~~~~~~~G~~tkd~e~~~v~k~v~~~~d~l~i~v~v~~~g 408 (521)
T KOG1230|consen 329 EFFNDLYFFDLTRNRWSEGQLQGKKSPATSRRRSRKDQEKELQRPTVGPNTKDLEVQAVDKAVCPTTDSLFIYVGVWEPG 408 (521)
T ss_pred hhhhhhhheecccchhhHhhhccCCCCccccccccccccccccCcccCCCcccccceecceeeeecCCceEEEeecCCCC
Confidence 57889999999999975410 00 0 1122333444444222
Q ss_pred cEEEEe--cCCc-eEEeccchhhcccceeEEEEECCeEEEEcceecCCCCcccccccCceeeeccCCCCCceeEcCCCC
Q 019186 256 GLIIKQ--HRDV-RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMT 331 (345)
Q Consensus 256 ~~i~~~--d~~~-W~~~~~~p~~~~r~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~v~~~~ 331 (345)
...+-. +... -..-.+-+.+.+|....+++..|.+||.||..+.+.+. ..++|.+..|..++ ++|+++-++.
T Consensus 409 ~~~~p~s~~e~s~~~~~e~~~~~~pr~d~~~~v~~G~~~i~gGi~ee~d~q---~tl~dfyal~~hr~-~~~K~L~~~s 483 (521)
T KOG1230|consen 409 EADYPESEDEASREGDREPDEGEFPRMDDELSVKVGVLYIGGGIFEERDWQ---PTLRDFYALDLHRN-EKGKQLKTKS 483 (521)
T ss_pred CCCCcccccccccccCCCCCCCCCccCCCccCcccceEEecCCCccccccc---chHHHHhhhhhhhh-hhhhhhccCC
Confidence 000000 0000 11111122357888888899999999999976554433 35788888888665 3599886654
No 25
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.88 E-value=4e-22 Score=175.26 Aligned_cols=255 Identities=16% Similarity=0.254 Sum_probs=183.9
Q ss_pred HHHHhhc-ChhhHHHHHhcCC--CCcEEEEEecCC---CCeEEEEeCCCCCEEeCCCCCccccccceeEEEEECCEEEEE
Q 019186 34 SWRAAIR-SPELFKARQEVGS--SENLLCVCAFDP---ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVL 107 (345)
Q Consensus 34 ~w~~~~~-~~~~~~~~~~~~~--~~~~l~v~gg~~---~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~lyv~ 107 (345)
+||.+.. +.+.+++|..|.. ..+.|.+|||.. .+.+.+||-.+|+|..-.--..-+++...|+.+..+.+||+|
T Consensus 18 rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEGiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvF 97 (830)
T KOG4152|consen 18 RWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEGIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVF 97 (830)
T ss_pred ceEEEecccCCCCCccccchheeeeeeEEEecCCcccchhhhhhhccccceeecchhcCCCCCchhhcceEecCceEEEE
Confidence 5765543 3356666666543 489999998844 567889999999997642221112236677777788999999
Q ss_pred cCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccCC-------CCCCCceeeeeeEeCCeEEEEcCcCCC--------C
Q 019186 108 GGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPRA-------SMLVPRAMFACCALKEKIVVAGGFTSC--------R 172 (345)
Q Consensus 108 GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~-------~~~~~r~~~~~~~~~~~iyv~gG~~~~--------~ 172 (345)
||..+.+. +++++|.+-...-.|+++. .+|-+|-+|+..+++++-|+|||..+. .
T Consensus 98 GGMvEYGk----------YsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvP 167 (830)
T KOG4152|consen 98 GGMVEYGK----------YSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVP 167 (830)
T ss_pred ccEeeecc----------ccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccc
Confidence 99866543 6777766655555577653 356789999999999999999998632 2
Q ss_pred CCCceEEEEeCCCC----ceEeC---CCCCccCCCceeEEEE------CCEEEEEec----CcceEEEEECCCCCeeec-
Q 019186 173 KSISQAEMYDPEKD----VWVPI---PDLHRTHNSACTGVVI------GGKVHVLHK----GLSTVQVLDHMGLGWTVE- 234 (345)
Q Consensus 173 ~~~~~v~~yd~~~~----~W~~~---~~~~~~~~~~~~~~~~------~~~iyv~gG----~~~~i~~yd~~~~~W~~~- 234 (345)
.+++++++.++... .|... ..+|.+ |..|.++.+ ..++||+|| .+.+++..|+++..|.+.
T Consensus 168 rYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~p-RESHTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~ 246 (830)
T KOG4152|consen 168 RYLNDLYILELRPGSGVVAWDIPITYGVLPPP-RESHTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPS 246 (830)
T ss_pred hhhcceEEEEeccCCceEEEecccccCCCCCC-cccceeEEEEeccCCcceEEEEcccccccccceeEEecceeeccccc
Confidence 35678888887744 38643 456777 767777665 346999999 789999999999999875
Q ss_pred ----cCCCC-CCceEEEcCeEEEEeC---------------------cEEEEecCCc--eEEec-----cchhhccccee
Q 019186 235 ----DYGWL-QGPMAIVHDSVYLMSH---------------------GLIIKQHRDV--RKVVA-----SASEFRRRIGF 281 (345)
Q Consensus 235 ----~~~~~-~~~~~~~~~~l~~~~~---------------------~~i~~~d~~~--W~~~~-----~~p~~~~r~~~ 281 (345)
.++++ -+++..+++++|+||| +.+-.++.++ |+.+- +-..+..|.+|
T Consensus 247 ~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGH 326 (830)
T KOG4152|consen 247 LSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGH 326 (830)
T ss_pred ccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccccccccccc
Confidence 33444 7888999999999998 2222333333 77651 11124789999
Q ss_pred EEEEECCeEEEEcceecC
Q 019186 282 AMIGMGDDIYVIGGVIGP 299 (345)
Q Consensus 282 ~~~~~~~~l~i~GG~~~~ 299 (345)
.++.++.++||..|.++.
T Consensus 327 CAvAigtRlYiWSGRDGY 344 (830)
T KOG4152|consen 327 CAVAIGTRLYIWSGRDGY 344 (830)
T ss_pred eeEEeccEEEEEeccchh
Confidence 999999999999998764
No 26
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.86 E-value=9.5e-21 Score=166.68 Aligned_cols=245 Identities=16% Similarity=0.229 Sum_probs=180.3
Q ss_pred CCEEeCCCCCcc-ccccceeEEEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCccc---CCCCCCCcee
Q 019186 77 DLWITLPVLPSK-IRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSP---RASMLVPRAM 152 (345)
Q Consensus 77 ~~W~~~~~~~~~-~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~---~~~~~~~r~~ 152 (345)
-+|+.+.....+ +.+|+.|.++++...|.||||.++. ...++.+||..+++|.. .+++|..-+.
T Consensus 17 ~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEG------------iiDELHvYNTatnqWf~PavrGDiPpgcAA 84 (830)
T KOG4152|consen 17 VRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEG------------IIDELHVYNTATNQWFAPAVRGDIPPGCAA 84 (830)
T ss_pred cceEEEecccCCCCCccccchheeeeeeEEEecCCccc------------chhhhhhhccccceeecchhcCCCCCchhh
Confidence 468776443222 2248889999999999999997554 46789999999999975 4577777778
Q ss_pred eeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCC-------CCccCCCceeEEEECCEEEEEec---------
Q 019186 153 FACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPD-------LHRTHNSACTGVVIGGKVHVLHK--------- 216 (345)
Q Consensus 153 ~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~-------~~~~~~~~~~~~~~~~~iyv~gG--------- 216 (345)
|+.+..+.+||+|||+.+.+++.++++..-.....|+++.+ +|.+ |.+|+....+++-|+|||
T Consensus 85 ~GfvcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCP-RlGHSFsl~gnKcYlFGGLaNdseDpk 163 (830)
T KOG4152|consen 85 FGFVCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCP-RLGHSFSLVGNKCYLFGGLANDSEDPK 163 (830)
T ss_pred cceEecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCC-ccCceeEEeccEeEEeccccccccCcc
Confidence 88888899999999999877777766554444455667643 5566 889999999999999999
Q ss_pred -----CcceEEEEECCCC----Ceeec------cCCCCCCceEEE------cCeEEEEeC------cEEEEecCCc--eE
Q 019186 217 -----GLSTVQVLDHMGL----GWTVE------DYGWLQGPMAIV------HDSVYLMSH------GLIIKQHRDV--RK 267 (345)
Q Consensus 217 -----~~~~i~~yd~~~~----~W~~~------~~~~~~~~~~~~------~~~l~~~~~------~~i~~~d~~~--W~ 267 (345)
.+++++..++.-+ .|... +..+..+.+++. ..++|++|| ++++.+|.++ |.
T Consensus 164 nNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~ 243 (830)
T KOG4152|consen 164 NNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTWN 243 (830)
T ss_pred cccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccccccceeEEecceeecc
Confidence 5677888887644 47653 222226666665 348999998 8999999998 99
Q ss_pred Eeccch-hhcccceeEEEEECCeEEEEcceecCCC-------CcccccccCceeeeccCCCCCceeEcC-------CCCC
Q 019186 268 VVASAS-EFRRRIGFAMIGMGDDIYVIGGVIGPDR-------WNWDIKPMSDVDVLTVGAERPTWRQVS-------PMTR 332 (345)
Q Consensus 268 ~~~~~p-~~~~r~~~~~~~~~~~l~i~GG~~~~~~-------~~~~~~~~~~v~~yd~~~~~~~W~~v~-------~~~~ 332 (345)
+...-- .+.+|.-|+...+++++|||||....-. +.+.=+-.+++-++++.+. .|..+- ..|.
T Consensus 244 kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~--~W~tl~~d~~ed~tiPR 321 (830)
T KOG4152|consen 244 KPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTM--AWETLLMDTLEDNTIPR 321 (830)
T ss_pred cccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecch--heeeeeecccccccccc
Confidence 874321 1468999999999999999999653211 1111234456778899998 999872 2577
Q ss_pred ccee
Q 019186 333 CRGT 336 (345)
Q Consensus 333 ~r~~ 336 (345)
+|..
T Consensus 322 ~RAG 325 (830)
T KOG4152|consen 322 ARAG 325 (830)
T ss_pred cccc
Confidence 7776
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.83 E-value=1e-18 Score=148.30 Aligned_cols=249 Identities=17% Similarity=0.209 Sum_probs=184.8
Q ss_pred CCcEEEEEecCCCCeEEEEeCCC--CCEEeCCCCCccccccceeEEEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCceE
Q 019186 54 SENLLCVCAFDPENLWQLYDPLR--DLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVW 131 (345)
Q Consensus 54 ~~~~l~v~gg~~~~~~~~yd~~~--~~W~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~ 131 (345)
.+..+||.=|+.-.+++..|... ..|+.+...|.. .|.....++++++||||||...... ......++++
T Consensus 45 ig~~~YVGLGs~G~afy~ldL~~~~k~W~~~a~FpG~--~rnqa~~a~~~~kLyvFgG~Gk~~~------~~~~~~nd~Y 116 (381)
T COG3055 45 IGDTVYVGLGSAGTAFYVLDLKKPGKGWTKIADFPGG--ARNQAVAAVIGGKLYVFGGYGKSVS------SSPQVFNDAY 116 (381)
T ss_pred ecceEEEEeccCCccceehhhhcCCCCceEcccCCCc--ccccchheeeCCeEEEeeccccCCC------CCceEeeeeE
Confidence 46789988777777888888754 479999999976 5888899999999999999854322 2344688999
Q ss_pred EEeCCCCCcccCCCC-CCCceeeeeeEeCC-eEEEEcCcCCC---------------------------------CCCCc
Q 019186 132 SYDPVTRQWSPRASM-LVPRAMFACCALKE-KIVVAGGFTSC---------------------------------RKSIS 176 (345)
Q Consensus 132 ~yd~~t~~W~~~~~~-~~~r~~~~~~~~~~-~iyv~gG~~~~---------------------------------~~~~~ 176 (345)
+|||.+++|+++... |..-..+..+..++ +||++||.+.. .....
T Consensus 117 ~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ 196 (381)
T COG3055 117 RYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNK 196 (381)
T ss_pred EecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccc
Confidence 999999999998753 55566777788876 99999997610 12346
Q ss_pred eEEEEeCCCCceEeCCCCCccCCCceeEEEECCEEEEEec------CcceEEEEECC--CCCeeeccCCCC---------
Q 019186 177 QAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHK------GLSTVQVLDHM--GLGWTVEDYGWL--------- 239 (345)
Q Consensus 177 ~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~iyv~gG------~~~~i~~yd~~--~~~W~~~~~~~~--------- 239 (345)
.+..|||+++.|+.+...|--..++.+.+.-++++.++-| ++..+..++.. ..+|..+++.+.
T Consensus 197 ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGv 276 (381)
T COG3055 197 EVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGV 276 (381)
T ss_pred cccccccccchhhhcCcCcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCCcccc
Confidence 8999999999999998666543666555555777888877 55666666665 558999876655
Q ss_pred -CCceEEEcCeEEEEeC--------------------------cEEEEecCCceEEeccchhhcccceeEEEEECCeEEE
Q 019186 240 -QGPMAIVHDSVYLMSH--------------------------GLIIKQHRDVRKVVASASEFRRRIGFAMIGMGDDIYV 292 (345)
Q Consensus 240 -~~~~~~~~~~l~~~~~--------------------------~~i~~~d~~~W~~~~~~p~~~~r~~~~~~~~~~~l~i 292 (345)
.+..-..++.+.+.++ .+|+.+|...|+.+.++|. .+.....+..+++||+
T Consensus 277 AGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d~g~Wk~~GeLp~--~l~YG~s~~~nn~vl~ 354 (381)
T COG3055 277 AGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDNGSWKIVGELPQ--GLAYGVSLSYNNKVLL 354 (381)
T ss_pred ceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEcCCceeeecccCC--CccceEEEecCCcEEE
Confidence 2222334556666655 7999999878999999994 5555556677999999
Q ss_pred EcceecCCCCcccccccCceeeeccC
Q 019186 293 IGGVIGPDRWNWDIKPMSDVDVLTVG 318 (345)
Q Consensus 293 ~GG~~~~~~~~~~~~~~~~v~~yd~~ 318 (345)
+||.+..+ +.+.+|+.....
T Consensus 355 IGGE~~~G------ka~~~v~~l~~~ 374 (381)
T COG3055 355 IGGETSGG------KATTRVYSLSWD 374 (381)
T ss_pred EccccCCC------eeeeeEEEEEEc
Confidence 99988776 466666654433
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.78 E-value=8.4e-18 Score=142.73 Aligned_cols=239 Identities=15% Similarity=0.180 Sum_probs=168.0
Q ss_pred EeCCCCCccccccceeEEEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCC--CCcccCCCCC-CCceeeeee
Q 019186 80 ITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVT--RQWSPRASML-VPRAMFACC 156 (345)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t--~~W~~~~~~~-~~r~~~~~~ 156 (345)
.++|.+|.+ ..+-+-+..++.+||-=|.. -...+..|++. +.|+++...| .+|.+...+
T Consensus 28 ~~lPdlPvg---~KnG~Ga~ig~~~YVGLGs~---------------G~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a 89 (381)
T COG3055 28 GQLPDLPVG---FKNGAGALIGDTVYVGLGSA---------------GTAFYVLDLKKPGKGWTKIADFPGGARNQAVAA 89 (381)
T ss_pred ccCCCCCcc---ccccccceecceEEEEeccC---------------CccceehhhhcCCCCceEcccCCCcccccchhe
Confidence 355667765 55556677888999977742 24577777765 4699999877 678999999
Q ss_pred EeCCeEEEEcCcCCC----CCCCceEEEEeCCCCceEeCCCCCccCCCceeEEEECC-EEEEEec---------------
Q 019186 157 ALKEKIVVAGGFTSC----RKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGG-KVHVLHK--------------- 216 (345)
Q Consensus 157 ~~~~~iyv~gG~~~~----~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-~iyv~gG--------------- 216 (345)
+++++||++||.... ....+++++|||.+++|+.+.........++.++.+++ +||++||
T Consensus 90 ~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~ 169 (381)
T COG3055 90 VIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGA 169 (381)
T ss_pred eeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhh
Confidence 999999999998632 23357999999999999988664333266777788887 8999999
Q ss_pred ------------------------CcceEEEEECCCCCeeeccCCCC----CCceEEEcCeEEEEeC--------cEEEE
Q 019186 217 ------------------------GLSTVQVLDHMGLGWTVEDYGWL----QGPMAIVHDSVYLMSH--------GLIIK 260 (345)
Q Consensus 217 ------------------------~~~~i~~yd~~~~~W~~~~~~~~----~~~~~~~~~~l~~~~~--------~~i~~ 260 (345)
....+..||+.+++|+.+...+. .++.+.-++++.+++| ..+..
T Consensus 170 a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~ 249 (381)
T COG3055 170 AGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQ 249 (381)
T ss_pred hcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCcccCccCcceeecCCeEEEEcceecCCccccceeE
Confidence 56678899999999999976555 2233334666888887 34444
Q ss_pred ecCC--c--eEEeccchhhcccceeEE-----EEECCeEEEEcceecCCC-----------Cc-ccccccCceeeeccCC
Q 019186 261 QHRD--V--RKVVASASEFRRRIGFAM-----IGMGDDIYVIGGVIGPDR-----------WN-WDIKPMSDVDVLTVGA 319 (345)
Q Consensus 261 ~d~~--~--W~~~~~~p~~~~r~~~~~-----~~~~~~l~i~GG~~~~~~-----------~~-~~~~~~~~v~~yd~~~ 319 (345)
++-. . |+++..+|.+..-..-++ -..++.+++.||.+-.+. +. -.....++|+++| .
T Consensus 250 ~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~ 327 (381)
T COG3055 250 ADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--N 327 (381)
T ss_pred EEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--C
Confidence 4432 2 999988874322111111 233678888888542111 11 1224567888888 6
Q ss_pred CCCceeEcCCCCCcceeEEeeee
Q 019186 320 ERPTWRQVSPMTRCRGTILGCTQ 342 (345)
Q Consensus 320 ~~~~W~~v~~~~~~r~~~~~~~~ 342 (345)
+ .|+.+++||.++. +|+++
T Consensus 328 g--~Wk~~GeLp~~l~--YG~s~ 346 (381)
T COG3055 328 G--SWKIVGELPQGLA--YGVSL 346 (381)
T ss_pred C--ceeeecccCCCcc--ceEEE
Confidence 6 8999999999887 46654
No 29
>PF13964 Kelch_6: Kelch motif
Probab=99.33 E-value=2.7e-12 Score=80.85 Aligned_cols=50 Identities=34% Similarity=0.579 Sum_probs=45.2
Q ss_pred ccceeEEEEECCeEEEEcceecCCCCcccccccCceeeeccCCCCCceeEcCCCCCcc
Q 019186 277 RRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCR 334 (345)
Q Consensus 277 ~r~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~v~~~~~~r 334 (345)
+|.+|+++.++++|||+||..... ...+++++||++++ +|.++++||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~------~~~~~v~~yd~~t~--~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSG------KYSNDVERYDPETN--TWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCC------CccccEEEEcCCCC--cEEECCCCCCCC
Confidence 478899999999999999988742 57899999999999 999999999987
No 30
>PF13964 Kelch_6: Kelch motif
Probab=99.22 E-value=4e-11 Score=75.46 Aligned_cols=49 Identities=31% Similarity=0.588 Sum_probs=45.1
Q ss_pred CceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCcc
Q 019186 149 PRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRT 197 (345)
Q Consensus 149 ~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~ 197 (345)
+|..+++++++++||++||..+.....+++++||+++++|+.+++||.+
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~p 49 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTP 49 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCC
Confidence 5888999999999999999987557789999999999999999999987
No 31
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.16 E-value=1.1e-11 Score=109.91 Aligned_cols=187 Identities=15% Similarity=0.220 Sum_probs=130.8
Q ss_pred CCCCCEEeCCCCC-------ccccccceeEEEEECC--EEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccCC
Q 019186 74 PLRDLWITLPVLP-------SKIRHLAHFGVVSTAG--KLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPRA 144 (345)
Q Consensus 74 ~~~~~W~~~~~~~-------~~~~~~~~~~~~~~~~--~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~ 144 (345)
+-+.+|.+.++.. ..+..|.+|-|+...+ .||+.||+++.. ...++|.|+...++|..+.
T Consensus 236 ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~-----------~l~DFW~Y~v~e~~W~~iN 304 (723)
T KOG2437|consen 236 EYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQ-----------DLADFWAYSVKENQWTCIN 304 (723)
T ss_pred cccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccch-----------hHHHHHhhcCCcceeEEee
Confidence 3455787765543 2344588999998866 899999996543 5899999999999998753
Q ss_pred ---CCCCCceeeeeeEe--CCeEEEEcCcCCC-----CCCCceEEEEeCCCCceEeCCCC------CccCCCceeEEEEC
Q 019186 145 ---SMLVPRAMFACCAL--KEKIVVAGGFTSC-----RKSISQAEMYDPEKDVWVPIPDL------HRTHNSACTGVVIG 208 (345)
Q Consensus 145 ---~~~~~r~~~~~~~~--~~~iyv~gG~~~~-----~~~~~~v~~yd~~~~~W~~~~~~------~~~~~~~~~~~~~~ 208 (345)
..|..|..|.++.. ..++|+.|-+-+. .....++|+||..++.|..+.-- |.. ..-|..++.+
T Consensus 305 ~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~-vfDHqM~Vd~ 383 (723)
T KOG2437|consen 305 RDTEGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKL-VFDHQMCVDS 383 (723)
T ss_pred cCCCCCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcce-eecceeeEec
Confidence 57889999999876 4599999976422 12346899999999999877422 222 4455666776
Q ss_pred CE--EEEEec--------CcceEEEEECCCCCeeeccCCCCCCceEEEcCeEEEEeCcEEEEecCCceEEeccchhhccc
Q 019186 209 GK--VHVLHK--------GLSTVQVLDHMGLGWTVEDYGWLQGPMAIVHDSVYLMSHGLIIKQHRDVRKVVASASEFRRR 278 (345)
Q Consensus 209 ~~--iyv~gG--------~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~d~~~W~~~~~~p~~~~r 278 (345)
++ |||+|| ....++.||.....|.........+.- + .-....|
T Consensus 384 ~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~-------------------------v--vE~~~sR 436 (723)
T KOG2437|consen 384 EKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGP-------------------------V--VEDIQSR 436 (723)
T ss_pred CcceEEEecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCc-------------------------c--hhHHHHH
Confidence 66 999999 456689999999999876432110100 0 0012467
Q ss_pred ceeEEEEE--CCeEEEEcceecC
Q 019186 279 IGFAMIGM--GDDIYVIGGVIGP 299 (345)
Q Consensus 279 ~~~~~~~~--~~~l~i~GG~~~~ 299 (345)
.+|.+-.+ +..+|++||..+.
T Consensus 437 ~ghcmE~~~~n~~ly~fggq~s~ 459 (723)
T KOG2437|consen 437 IGHCMEFHSKNRCLYVFGGQRSK 459 (723)
T ss_pred HHHHHHhcCCCCeEEeccCcccc
Confidence 77766544 5679999986654
No 32
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.09 E-value=1.5e-10 Score=71.91 Aligned_cols=47 Identities=38% Similarity=0.763 Sum_probs=42.2
Q ss_pred ccceeEEEEECCeEEEEcceecCCCCcccccccCceeeeccCCCCCceeEcCCCC
Q 019186 277 RRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMT 331 (345)
Q Consensus 277 ~r~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~v~~~~ 331 (345)
+|..|+++.++++|||+||.+... ...+++++||+.++ +|.++++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~------~~~~~v~~yd~~~~--~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNN------QPTNSVEVYDPETN--TWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTS------SBEEEEEEEETTTT--EEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccC------ceeeeEEEEeCCCC--EEEEcCCCC
Confidence 478899999999999999999833 58899999999999 999999987
No 33
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=99.06 E-value=3e-10 Score=70.99 Aligned_cols=49 Identities=24% Similarity=0.482 Sum_probs=41.6
Q ss_pred CCeEEEEcceecCCCCcccccccCceeeeccCCCCCceeEcCCCCCcceeEEeeeee
Q 019186 287 GDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGTILGCTQL 343 (345)
Q Consensus 287 ~~~l~i~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~v~~~~~~r~~~~~~~~~ 343 (345)
+++|||+||.+.... ...+|+|+||+.++ +|++++++|.+|.. |+++++
T Consensus 1 g~~~~vfGG~~~~~~-----~~~nd~~~~~~~~~--~W~~~~~~P~~R~~-h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGG-----TRLNDVWVFDLDTN--TWTRIGDLPPPRSG-HTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCC-----CEecCEEEEECCCC--EEEECCCCCCCccc-eEEEEC
Confidence 588999999883111 58899999999999 99999999999999 777764
No 34
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.04 E-value=1.9e-10 Score=71.40 Aligned_cols=47 Identities=32% Similarity=0.690 Sum_probs=42.5
Q ss_pred CceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCC
Q 019186 149 PRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLH 195 (345)
Q Consensus 149 ~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~ 195 (345)
+|+.+++++++++||++||.......++++++||+++++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 58899999999999999999986677899999999999999998875
No 35
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=99.02 E-value=5.1e-10 Score=70.05 Aligned_cols=48 Identities=25% Similarity=0.623 Sum_probs=31.8
Q ss_pred ccceeEEEEE-CCeEEEEcceecCCCCcccccccCceeeeccCCCCCceeEcCCCCC
Q 019186 277 RRIGFAMIGM-GDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTR 332 (345)
Q Consensus 277 ~r~~~~~~~~-~~~l~i~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~v~~~~~ 332 (345)
+|.+|+++.+ +++|||+||.+..+ ..++|+|+||++++ +|.+++++|.
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~------~~~~d~~~~d~~~~--~W~~~~~~P~ 49 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSG------SPLNDLWIFDIETN--TWTRLPSMPS 49 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-T------EE---EEEEETTTT--EEEE--SS--
T ss_pred CcceEEEEEEeCCeEEEECCCCCCC------cccCCEEEEECCCC--EEEECCCCCC
Confidence 4888999988 58999999998875 58899999999999 9999988874
No 36
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.92 E-value=2.6e-09 Score=66.74 Aligned_cols=47 Identities=30% Similarity=0.541 Sum_probs=40.5
Q ss_pred ccceeEEEEECCeEEEEcce--ecCCCCcccccccCceeeeccCCCCCceeEcCCCC
Q 019186 277 RRIGFAMIGMGDDIYVIGGV--IGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMT 331 (345)
Q Consensus 277 ~r~~~~~~~~~~~l~i~GG~--~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~v~~~~ 331 (345)
+|..|+++.++++||++||+ .... ...+++++||++++ +|+++++||
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~------~~~~~v~~~d~~t~--~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGG------SSSNDVWVFDTETN--QWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCC------cccceeEEEECCCC--EEeecCCCC
Confidence 47889999999999999999 2221 58889999999999 999999876
No 37
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.89 E-value=3.9e-09 Score=65.91 Aligned_cols=49 Identities=31% Similarity=0.623 Sum_probs=41.6
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccCCCCCCCceeeeeeEe
Q 019186 101 AGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPRASMLVPRAMFACCAL 158 (345)
Q Consensus 101 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 158 (345)
+++|||+||.... .....+++|+||+.+++|++++++|.+|..|+++++
T Consensus 1 g~~~~vfGG~~~~---------~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDD---------GGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCC---------CCCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 5789999998621 223689999999999999999999999999999863
No 38
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.88 E-value=7.3e-09 Score=64.66 Aligned_cols=47 Identities=26% Similarity=0.475 Sum_probs=41.0
Q ss_pred CceeeeeeEeCCeEEEEcCc--CCCCCCCceEEEEeCCCCceEeCCCCC
Q 019186 149 PRAMFACCALKEKIVVAGGF--TSCRKSISQAEMYDPEKDVWVPIPDLH 195 (345)
Q Consensus 149 ~r~~~~~~~~~~~iyv~gG~--~~~~~~~~~v~~yd~~~~~W~~~~~~~ 195 (345)
+|..|++++++++||++||. .......+++++||+++++|+.+++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 57889999999999999999 444566889999999999999998764
No 39
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.83 E-value=4.3e-09 Score=65.81 Aligned_cols=47 Identities=23% Similarity=0.497 Sum_probs=31.8
Q ss_pred CceeeeeeEe-CCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCC
Q 019186 149 PRAMFACCAL-KEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLH 195 (345)
Q Consensus 149 ~r~~~~~~~~-~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~ 195 (345)
+|..|+++.+ +++||++||.......++++++||+++++|++++++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 5889999988 5999999999876567899999999999999998776
No 40
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=98.78 E-value=5.9e-09 Score=92.89 Aligned_cols=154 Identities=16% Similarity=0.185 Sum_probs=111.0
Q ss_pred CCCcccCCC----------CCCCceeeeeeEeCC--eEEEEcCcCCCCCCCceEEEEeCCCCceEeCC---CCCccCCCc
Q 019186 137 TRQWSPRAS----------MLVPRAMFACCALKE--KIVVAGGFTSCRKSISQAEMYDPEKDVWVPIP---DLHRTHNSA 201 (345)
Q Consensus 137 t~~W~~~~~----------~~~~r~~~~~~~~~~--~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~---~~~~~~~~~ 201 (345)
+.+|.+++. -|..|.+|-++...+ .||+.||.++. +.+.+.|.|+...+.|+.+- ..|.. |..
T Consensus 238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~-~~l~DFW~Y~v~e~~W~~iN~~t~~PG~-RsC 315 (723)
T KOG2437|consen 238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGT-QDLADFWAYSVKENQWTCINRDTEGPGA-RSC 315 (723)
T ss_pred cccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccc-hhHHHHHhhcCCcceeEEeecCCCCCcc-hhh
Confidence 456877653 245688899988755 99999999875 45789999999999999762 36777 767
Q ss_pred eeEEEECC--EEEEEec-----------CcceEEEEECCCCCeeeccCCCCCCceEEEcCeEEEEeCcEEEEecCCceEE
Q 019186 202 CTGVVIGG--KVHVLHK-----------GLSTVQVLDHMGLGWTVEDYGWLQGPMAIVHDSVYLMSHGLIIKQHRDVRKV 268 (345)
Q Consensus 202 ~~~~~~~~--~iyv~gG-----------~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~d~~~W~~ 268 (345)
|..+.... ++|++|- ..++++.||..++.|..+.-...
T Consensus 316 HRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~----------------------------- 366 (723)
T KOG2437|consen 316 HRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTA----------------------------- 366 (723)
T ss_pred hhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEeccccc-----------------------------
Confidence 76665544 8999986 56779999999999988742211
Q ss_pred eccchhhcccceeEEEEECCe--EEEEcceecCCCCcccccccCceeeeccCCCCCceeEcCC
Q 019186 269 VASASEFRRRIGFAMIGMGDD--IYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSP 329 (345)
Q Consensus 269 ~~~~p~~~~r~~~~~~~~~~~--l~i~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~v~~ 329 (345)
....| ..-+-|+|++.+++ |||+||..-.- +.....-++.||.... .|..++.
T Consensus 367 ~dGGP--~~vfDHqM~Vd~~k~~iyVfGGr~~~~----~e~~f~GLYaf~~~~~--~w~~l~e 421 (723)
T KOG2437|consen 367 ADGGP--KLVFDHQMCVDSEKHMIYVFGGRILTC----NEPQFSGLYAFNCQCQ--TWKLLRE 421 (723)
T ss_pred ccCCc--ceeecceeeEecCcceEEEecCeeccC----CCccccceEEEecCCc--cHHHHHH
Confidence 00111 24456899999888 99999964221 1134567899999998 9987754
No 41
>smart00612 Kelch Kelch domain.
Probab=98.75 E-value=1e-08 Score=63.40 Aligned_cols=45 Identities=27% Similarity=0.548 Sum_probs=38.4
Q ss_pred eEEEEcceecCCCCcccccccCceeeeccCCCCCceeEcCCCCCcceeEEeeeee
Q 019186 289 DIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGTILGCTQL 343 (345)
Q Consensus 289 ~l~i~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~v~~~~~~r~~~~~~~~~ 343 (345)
+||++||..+. ...+++++||+.++ +|.++++||.+|.. ++++++
T Consensus 1 ~iyv~GG~~~~-------~~~~~v~~yd~~~~--~W~~~~~~~~~r~~-~~~~~~ 45 (47)
T smart00612 1 KIYVVGGFDGG-------QRLKSVEVYDPETN--KWTPLPSMPTPRSG-HGVAVI 45 (47)
T ss_pred CEEEEeCCCCC-------ceeeeEEEECCCCC--eEccCCCCCCcccc-ceEEEe
Confidence 58999998653 36789999999999 99999999999998 666665
No 42
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.73 E-value=1.3e-06 Score=73.46 Aligned_cols=157 Identities=11% Similarity=0.097 Sum_probs=101.1
Q ss_pred cCceEEEeCCCCCcccCCCCCCCceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCC----CceEeCC-CCCccCCCc
Q 019186 127 TNEVWSYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEK----DVWVPIP-DLHRTHNSA 201 (345)
Q Consensus 127 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~----~~W~~~~-~~~~~~~~~ 201 (345)
......||+.+++++.+.......+...+..-+|++...||..+. ...+..|++.+ ..|.+.. .|..+ |..
T Consensus 45 ~a~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w~e~~~~m~~~-RWY 120 (243)
T PF07250_consen 45 PAHSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDWTESPNDMQSG-RWY 120 (243)
T ss_pred eEEEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCcc---ccceEEEecCCCCCCCCceECcccccCC-Ccc
Confidence 345667999999998876543344444444558999999998653 45688898876 5798876 47777 777
Q ss_pred eeEEEE-CCEEEEEecCcceEEEEECCCCC-eeeccCCCCCCceEEEcCeEEEEeCcEEEEecCCceEEeccc--hhhcc
Q 019186 202 CTGVVI-GGKVHVLHKGLSTVQVLDHMGLG-WTVEDYGWLQGPMAIVHDSVYLMSHGLIIKQHRDVRKVVASA--SEFRR 277 (345)
Q Consensus 202 ~~~~~~-~~~iyv~gG~~~~i~~yd~~~~~-W~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~d~~~W~~~~~~--p~~~~ 277 (345)
.++..+ ||+++|+||..+..+.|-+.... ..... |..+... ..+..
T Consensus 121 pT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~------------------------------~~~l~~~~~~~~~n 170 (243)
T PF07250_consen 121 PTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVT------------------------------LPFLSQTSDTLPNN 170 (243)
T ss_pred ccceECCCCCEEEEeCcCCCcccccCCccCCCCcee------------------------------eecchhhhccCccc
Confidence 766654 89999999954333333332111 00000 0001000 11234
Q ss_pred cceeEEEEECCeEEEEcceecCCCCcccccccCceeeeccCCCCCce-eEcCCCCCc
Q 019186 278 RIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTW-RQVSPMTRC 333 (345)
Q Consensus 278 r~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W-~~v~~~~~~ 333 (345)
.+-+....-+|+||+++.. +-.+||++++ ++ ++++++|..
T Consensus 171 lYP~~~llPdG~lFi~an~--------------~s~i~d~~~n--~v~~~lP~lPg~ 211 (243)
T PF07250_consen 171 LYPFVHLLPDGNLFIFANR--------------GSIIYDYKTN--TVVRTLPDLPGG 211 (243)
T ss_pred cCceEEEcCCCCEEEEEcC--------------CcEEEeCCCC--eEEeeCCCCCCC
Confidence 4556666669999999872 3468999998 77 889999965
No 43
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.72 E-value=5.8e-06 Score=70.16 Aligned_cols=182 Identities=10% Similarity=-0.013 Sum_probs=110.9
Q ss_pred CceEEEeCCCCCcccCCCCCCCce---ee-eeeEe-----CCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccC
Q 019186 128 NEVWSYDPVTRQWSPRASMLVPRA---MF-ACCAL-----KEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTH 198 (345)
Q Consensus 128 ~~~~~yd~~t~~W~~~~~~~~~r~---~~-~~~~~-----~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~ 198 (345)
..+.++||.|++|..+|..+.++. .. ....+ .-++..+...... .....+++|+..+++|+.+...+...
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~-~~~~~~~Vys~~~~~Wr~~~~~~~~~ 92 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN-RNQSEHQVYTLGSNSWRTIECSPPHH 92 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC-CCCccEEEEEeCCCCccccccCCCCc
Confidence 368999999999999986543211 10 11111 2255555433211 23467899999999999987433221
Q ss_pred CCceeEEEECCEEEEEecC----c-ceEEEEECCCCCeee-ccCCCC------CCceEEEcCeEEEEeC------cEEEE
Q 019186 199 NSACTGVVIGGKVHVLHKG----L-STVQVLDHMGLGWTV-EDYGWL------QGPMAIVHDSVYLMSH------GLIIK 260 (345)
Q Consensus 199 ~~~~~~~~~~~~iyv~gG~----~-~~i~~yd~~~~~W~~-~~~~~~------~~~~~~~~~~l~~~~~------~~i~~ 260 (345)
......+.++|.||.+... . ..|..||+.+++|.. ++.+.. ...++..+|+|.++.. -.|+.
T Consensus 93 ~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~IWv 172 (230)
T TIGR01640 93 PLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKDTNNFDLWV 172 (230)
T ss_pred cccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceEEEEECCEEEEEEecCCCCcEEEEE
Confidence 2222377889999998641 1 169999999999995 543221 2456778899888764 26666
Q ss_pred ecC---CceEEeccchhh-cc---c-ceeEEEEECCeEEEEcceecCCCCcccccccCceeeeccCCC
Q 019186 261 QHR---DVRKVVASASEF-RR---R-IGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE 320 (345)
Q Consensus 261 ~d~---~~W~~~~~~p~~-~~---r-~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~yd~~~~ 320 (345)
.+. .+|++.-.++.. .. . .....+..+++|++.... ..+ .-+..||+.++
T Consensus 173 l~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~-~~~---------~~~~~y~~~~~ 230 (230)
T TIGR01640 173 LNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCED-ENP---------FYIFYYNVGEN 230 (230)
T ss_pred ECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCC-CCc---------eEEEEEeccCC
Confidence 652 239987555421 11 1 112234457788887653 111 24889999874
No 44
>smart00612 Kelch Kelch domain.
Probab=98.66 E-value=4.7e-08 Score=60.40 Aligned_cols=47 Identities=32% Similarity=0.581 Sum_probs=40.1
Q ss_pred EEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccCCCCCCCceeeeeeEeCC
Q 019186 103 KLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPRASMLVPRAMFACCALKE 160 (345)
Q Consensus 103 ~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~ 160 (345)
+||++||.... ...+++++||+.+++|+.+++|+.+|..++++++++
T Consensus 1 ~iyv~GG~~~~-----------~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG-----------QRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC-----------ceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 48999997432 247889999999999999999999999999988764
No 45
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.61 E-value=2.9e-05 Score=65.85 Aligned_cols=198 Identities=12% Similarity=0.029 Sum_probs=112.8
Q ss_pred CCCCcEEEEEecCCCCeEEEEeCCCCCEEeCCCCCcccc--ccceeEEEEE----CCEEEEEcCCCCCCCCCCCCCCCCc
Q 019186 52 GSSENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIR--HLAHFGVVST----AGKLFVLGGGSDAVDPLTGDQDGSF 125 (345)
Q Consensus 52 ~~~~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~~~~~~--~~~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~~~~ 125 (345)
+++++.+++... ..+.++||.|++|..+++.+.+.. .....+.... +-||..+...... .
T Consensus 2 ~sCnGLlc~~~~---~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~-----------~ 67 (230)
T TIGR01640 2 VPCDGLICFSYG---KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN-----------R 67 (230)
T ss_pred cccceEEEEecC---CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC-----------C
Confidence 345777765542 678999999999999986543200 0111111111 2245555432110 0
Q ss_pred CcCceEEEeCCCCCcccCCCCCCC-ceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCceEe-CCCCCccC--CCc
Q 019186 126 ATNEVWSYDPVTRQWSPRASMLVP-RAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVP-IPDLHRTH--NSA 201 (345)
Q Consensus 126 ~~~~~~~yd~~t~~W~~~~~~~~~-r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~~--~~~ 201 (345)
....+++|+..+++|+.+...+.. ......+.++|.+|.+...... .....+..||..+++|+. ++.+.... ...
T Consensus 68 ~~~~~~Vys~~~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~-~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~ 146 (230)
T TIGR01640 68 NQSEHQVYTLGSNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTLKT-NPDYFIVSFDVSSERFKEFIPLPCGNSDSVDY 146 (230)
T ss_pred CCccEEEEEeCCCCccccccCCCCccccCCeEEECCEEEEEEEECCC-CCcEEEEEEEcccceEeeeeecCccccccccc
Confidence 245789999999999998743321 1122266779999998754321 112379999999999995 54322220 124
Q ss_pred eeEEEECCEEEEEec----CcceEEEEE-CCCCCeeeccCCC---C----C---CceEEEcCeEEEEeC---cE-EEEec
Q 019186 202 CTGVVIGGKVHVLHK----GLSTVQVLD-HMGLGWTVEDYGW---L----Q---GPMAIVHDSVYLMSH---GL-IIKQH 262 (345)
Q Consensus 202 ~~~~~~~~~iyv~gG----~~~~i~~yd-~~~~~W~~~~~~~---~----~---~~~~~~~~~l~~~~~---~~-i~~~d 262 (345)
...+.++|+|.++.. ..-+|+..+ -..+.|++.-..+ . . .....-+|+|++... .. +..||
T Consensus 147 ~~L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~ 226 (230)
T TIGR01640 147 LSLINYKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYN 226 (230)
T ss_pred eEEEEECCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEEEEe
Confidence 567788999988864 123555554 3355697642111 1 1 223444666666544 22 66666
Q ss_pred CC
Q 019186 263 RD 264 (345)
Q Consensus 263 ~~ 264 (345)
++
T Consensus 227 ~~ 228 (230)
T TIGR01640 227 VG 228 (230)
T ss_pred cc
Confidence 54
No 46
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.43 E-value=3.6e-06 Score=70.72 Aligned_cols=145 Identities=17% Similarity=0.255 Sum_probs=94.9
Q ss_pred EEEeCCCCCEEeCCCCCccccccceeEEEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCC----CCcccCC-
Q 019186 70 QLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVT----RQWSPRA- 144 (345)
Q Consensus 70 ~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t----~~W~~~~- 144 (345)
..||+.+++++.+...... .+...+..-+|++++.||..+ ....+-.|++.+ ..|.+.+
T Consensus 49 ~~yD~~tn~~rpl~v~td~---FCSgg~~L~dG~ll~tGG~~~-------------G~~~ir~~~p~~~~~~~~w~e~~~ 112 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDT---FCSGGAFLPDGRLLQTGGDND-------------GNKAIRIFTPCTSDGTCDWTESPN 112 (243)
T ss_pred EEEecCCCcEEeccCCCCC---cccCcCCCCCCCEEEeCCCCc-------------cccceEEEecCCCCCCCCceECcc
Confidence 4799999999988654332 222233345899999999754 234577788865 5698775
Q ss_pred CCCCCceeeeeeEe-CCeEEEEcCcCCCCCCCceEEEEeCCCC-----ceEeCCC----CCccCCCceeEEEECCEEEEE
Q 019186 145 SMLVPRAMFACCAL-KEKIVVAGGFTSCRKSISQAEMYDPEKD-----VWVPIPD----LHRTHNSACTGVVIGGKVHVL 214 (345)
Q Consensus 145 ~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~~~~~v~~yd~~~~-----~W~~~~~----~~~~~~~~~~~~~~~~~iyv~ 214 (345)
.|..+|.+.++..+ +|+++|+||... ...|.+..... .|..+.. .+.. .+-.....-+|+|+++
T Consensus 113 ~m~~~RWYpT~~~L~DG~vlIvGG~~~-----~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~n-lYP~~~llPdG~lFi~ 186 (243)
T PF07250_consen 113 DMQSGRWYPTATTLPDGRVLIVGGSNN-----PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNN-LYPFVHLLPDGNLFIF 186 (243)
T ss_pred cccCCCccccceECCCCCEEEEeCcCC-----CcccccCCccCCCCceeeecchhhhccCccc-cCceEEEcCCCCEEEE
Confidence 58899999999887 899999999873 22444443221 2222222 1222 3344445568999999
Q ss_pred ecCcceEEEEECCCCCe-eeccCCC
Q 019186 215 HKGLSTVQVLDHMGLGW-TVEDYGW 238 (345)
Q Consensus 215 gG~~~~i~~yd~~~~~W-~~~~~~~ 238 (345)
+. ..-..||.+++++ ..++..+
T Consensus 187 an--~~s~i~d~~~n~v~~~lP~lP 209 (243)
T PF07250_consen 187 AN--RGSIIYDYKTNTVVRTLPDLP 209 (243)
T ss_pred Ec--CCcEEEeCCCCeEEeeCCCCC
Confidence 84 4556789998877 5555443
No 47
>PLN02772 guanylate kinase
Probab=98.37 E-value=2.8e-06 Score=75.89 Aligned_cols=82 Identities=17% Similarity=0.229 Sum_probs=65.3
Q ss_pred cceeEEEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccC---CCCCCCceeeeeeEe-CCeEEEEcC
Q 019186 92 LAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPR---ASMLVPRAMFACCAL-KEKIVVAGG 167 (345)
Q Consensus 92 ~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~---~~~~~~r~~~~~~~~-~~~iyv~gG 167 (345)
+..++++.+++++||+||.++... ..+.+++||..|++|... +..|.+|.+|+++++ +++|+++++
T Consensus 25 ~~~~tav~igdk~yv~GG~~d~~~----------~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~ 94 (398)
T PLN02772 25 KNRETSVTIGDKTYVIGGNHEGNT----------LSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKK 94 (398)
T ss_pred CCcceeEEECCEEEEEcccCCCcc----------ccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeC
Confidence 778899999999999999765332 478999999999999875 467889999999988 689999987
Q ss_pred cCCCCCCCceEEEEeCCCC
Q 019186 168 FTSCRKSISQAEMYDPEKD 186 (345)
Q Consensus 168 ~~~~~~~~~~v~~yd~~~~ 186 (345)
.... -.++|.....|.
T Consensus 95 ~~~~---~~~~w~l~~~t~ 110 (398)
T PLN02772 95 GSAP---DDSIWFLEVDTP 110 (398)
T ss_pred CCCC---ccceEEEEcCCH
Confidence 6543 245666665543
No 48
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=98.31 E-value=2.4e-05 Score=67.22 Aligned_cols=169 Identities=14% Similarity=0.055 Sum_probs=93.2
Q ss_pred ECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccCCCCCCCceeeee--eEeCCeEEEEcCcCCCCCCCce
Q 019186 100 TAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPRASMLVPRAMFAC--CALKEKIVVAGGFTSCRKSISQ 177 (345)
Q Consensus 100 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~--~~~~~~iyv~gG~~~~~~~~~~ 177 (345)
++.+++|-|.. .+++-++|.+|++--+. ....+...+ .+.+|.+.... . -++
T Consensus 245 yd~rviisGSS----------------DsTvrvWDv~tge~l~t---lihHceaVLhlrf~ng~mvtcS-k------Drs 298 (499)
T KOG0281|consen 245 YDERVIVSGSS----------------DSTVRVWDVNTGEPLNT---LIHHCEAVLHLRFSNGYMVTCS-K------DRS 298 (499)
T ss_pred ccceEEEecCC----------------CceEEEEeccCCchhhH---HhhhcceeEEEEEeCCEEEEec-C------Cce
Confidence 46676666653 46788899888752111 111222222 22244443331 1 245
Q ss_pred EEEEeCCCCceEeCCCCCccCCCceeEEEECCEEEEEecCcceEEEEECCCCCeeec-cCCCCCCceEEEcCeEEEEeC-
Q 019186 178 AEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVE-DYGWLQGPMAIVHDSVYLMSH- 255 (345)
Q Consensus 178 v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~i~~yd~~~~~W~~~-~~~~~~~~~~~~~~~l~~~~~- 255 (345)
+.++|..+-+=..+--....++....++-+++++.|....-.++-.++..+..+... .....+-+++..+|++.+-|.
T Consensus 299 iaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr~rlvVSGSS 378 (499)
T KOG0281|consen 299 IAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSS 378 (499)
T ss_pred eEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhhcccccceehhccCeEEEecCC
Confidence 677665543311111111122444455566888555543456788888888877554 333346677788999999987
Q ss_pred -cEEEEecCCc---eEEeccchhhcccceeEEEEECCeEEEEcceecC
Q 019186 256 -GLIIKQHRDV---RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGP 299 (345)
Q Consensus 256 -~~i~~~d~~~---W~~~~~~p~~~~r~~~~~~~~~~~l~i~GG~~~~ 299 (345)
..|-.+|.+. -..++.-. .. -....++++-++.|++++.
T Consensus 379 DntIRlwdi~~G~cLRvLeGHE---eL--vRciRFd~krIVSGaYDGk 421 (499)
T KOG0281|consen 379 DNTIRLWDIECGACLRVLEGHE---EL--VRCIRFDNKRIVSGAYDGK 421 (499)
T ss_pred CceEEEEeccccHHHHHHhchH---Hh--hhheeecCceeeeccccce
Confidence 5676777655 22222111 11 1246788999999998875
No 49
>PF13854 Kelch_5: Kelch motif
Probab=98.31 E-value=1.2e-06 Score=52.43 Aligned_cols=38 Identities=29% Similarity=0.573 Sum_probs=33.3
Q ss_pred cccceeEEEEECCeEEEEcceec-CCCCcccccccCceeeeccCC
Q 019186 276 RRRIGFAMIGMGDDIYVIGGVIG-PDRWNWDIKPMSDVDVLTVGA 319 (345)
Q Consensus 276 ~~r~~~~~~~~~~~l~i~GG~~~-~~~~~~~~~~~~~v~~yd~~~ 319 (345)
.+|..|+++..+++|||+||.+. .. ...+|+|+||+.+
T Consensus 3 ~~R~~hs~~~~~~~iyi~GG~~~~~~------~~~~d~~~l~l~s 41 (42)
T PF13854_consen 3 SPRYGHSAVVVGNNIYIFGGYSGNNN------SYSNDLYVLDLPS 41 (42)
T ss_pred CCccceEEEEECCEEEEEcCccCCCC------CEECcEEEEECCC
Confidence 68999999999999999999984 32 5889999999976
No 50
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.30 E-value=0.001 Score=61.28 Aligned_cols=220 Identities=15% Similarity=0.087 Sum_probs=132.9
Q ss_pred CcEEEEEecCCCCeEEEEeCCCC--CEEeCCCCCccccccceeEEEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEE
Q 019186 55 ENLLCVCAFDPENLWQLYDPLRD--LWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWS 132 (345)
Q Consensus 55 ~~~l~v~gg~~~~~~~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~ 132 (345)
++.+|+.+. ...++.+|..++ .|+.- ++.. ...+-++.++.+|+..+ ...++.
T Consensus 120 ~~~v~v~~~--~g~l~ald~~tG~~~W~~~--~~~~----~~ssP~v~~~~v~v~~~-----------------~g~l~a 174 (394)
T PRK11138 120 GGKVYIGSE--KGQVYALNAEDGEVAWQTK--VAGE----ALSRPVVSDGLVLVHTS-----------------NGMLQA 174 (394)
T ss_pred CCEEEEEcC--CCEEEEEECCCCCCccccc--CCCc----eecCCEEECCEEEEECC-----------------CCEEEE
Confidence 667776542 457899999887 47653 2222 12223456788888654 236889
Q ss_pred EeCCCCC--cccCCCCCC--CceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCc--eEeCCCCCcc-C------C
Q 019186 133 YDPVTRQ--WSPRASMLV--PRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDV--WVPIPDLHRT-H------N 199 (345)
Q Consensus 133 yd~~t~~--W~~~~~~~~--~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~-~------~ 199 (345)
+|+.+++ |+.-...+. .+...+-++.++.+|+..+. ..+..+|+++.+ |+.--..+.. . .
T Consensus 175 ld~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~-------g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~ 247 (394)
T PRK11138 175 LNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDN-------GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVD 247 (394)
T ss_pred EEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCC-------CEEEEEEccCChhhheeccccCCCccchhcccc
Confidence 9998887 876433221 12223344557777765431 347888888764 8642111110 0 0
Q ss_pred CceeEEEECCEEEEEecCcceEEEEECCCC--CeeeccCCCCCCceEEEcCeEEEEeC-cEEEEecCCc----eEEeccc
Q 019186 200 SACTGVVIGGKVHVLHKGLSTVQVLDHMGL--GWTVEDYGWLQGPMAIVHDSVYLMSH-GLIIKQHRDV----RKVVASA 272 (345)
Q Consensus 200 ~~~~~~~~~~~iyv~gG~~~~i~~yd~~~~--~W~~~~~~~~~~~~~~~~~~l~~~~~-~~i~~~d~~~----W~~~~~~ 272 (345)
...+-+..++.+|+.+ ....++++|++++ .|+.--. .....+..++.||+... +.++.+|.++ |+.-..
T Consensus 248 ~~~sP~v~~~~vy~~~-~~g~l~ald~~tG~~~W~~~~~--~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~- 323 (394)
T PRK11138 248 VDTTPVVVGGVVYALA-YNGNLVALDLRSGQIVWKREYG--SVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDL- 323 (394)
T ss_pred cCCCcEEECCEEEEEE-cCCeEEEEECCCCCEEEeecCC--CccCcEEECCEEEEEcCCCeEEEEECCCCcEEEccccc-
Confidence 1123346789999876 4578999999877 4875321 12235667899999886 8999999876 864321
Q ss_pred hhhcccceeEEEEECCeEEEEcceecCCCCcccccccCceeeeccCCCCCceeE
Q 019186 273 SEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQ 326 (345)
Q Consensus 273 p~~~~r~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~ 326 (345)
..+...+.+..++.||+... . ..++++|+.+.+..|+.
T Consensus 324 ---~~~~~~sp~v~~g~l~v~~~---~----------G~l~~ld~~tG~~~~~~ 361 (394)
T PRK11138 324 ---LHRLLTAPVLYNGYLVVGDS---E----------GYLHWINREDGRFVAQQ 361 (394)
T ss_pred ---CCCcccCCEEECCEEEEEeC---C----------CEEEEEECCCCCEEEEE
Confidence 12223334556888887522 2 25788898887666765
No 51
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.28 E-value=0.0011 Score=61.00 Aligned_cols=224 Identities=14% Similarity=0.119 Sum_probs=135.5
Q ss_pred CCCcEEEEEecCCCCeEEEEeCCCCC--EEeCCCCCccc-----cccceeEEEEECCEEEEEcCCCCCCCCCCCCCCCCc
Q 019186 53 SSENLLCVCAFDPENLWQLYDPLRDL--WITLPVLPSKI-----RHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSF 125 (345)
Q Consensus 53 ~~~~~l~v~gg~~~~~~~~yd~~~~~--W~~~~~~~~~~-----~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ 125 (345)
..++.+|+... ...++.+|..+++ |+.-..-.... ......+.++.+++||+.+.
T Consensus 67 v~~~~vy~~~~--~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~---------------- 128 (394)
T PRK11138 67 VAYNKVYAADR--AGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE---------------- 128 (394)
T ss_pred EECCEEEEECC--CCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC----------------
Confidence 34788888764 3578999998774 87532211000 01222345667888987543
Q ss_pred CcCceEEEeCCCCC--cccCCCCCCCceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCc--eEeCCCCCcc-CCC
Q 019186 126 ATNEVWSYDPVTRQ--WSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDV--WVPIPDLHRT-HNS 200 (345)
Q Consensus 126 ~~~~~~~yd~~t~~--W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~-~~~ 200 (345)
...++.+|..+++ |+.-..- ....+.++.++.+|+..+ ...+..+|+++.+ |+.-...+.. .+.
T Consensus 129 -~g~l~ald~~tG~~~W~~~~~~---~~~ssP~v~~~~v~v~~~-------~g~l~ald~~tG~~~W~~~~~~~~~~~~~ 197 (394)
T PRK11138 129 -KGQVYALNAEDGEVAWQTKVAG---EALSRPVVSDGLVLVHTS-------NGMLQALNESDGAVKWTVNLDVPSLTLRG 197 (394)
T ss_pred -CCEEEEEECCCCCCcccccCCC---ceecCCEEECCEEEEECC-------CCEEEEEEccCCCEeeeecCCCCcccccC
Confidence 2468899998875 8754321 112334556888887543 1358999998875 8754332211 011
Q ss_pred ceeEEEECCEEEEEecCcceEEEEECCCC--CeeeccCCCC-----------CCceEEEcCeEEEEeC-cEEEEecCCc-
Q 019186 201 ACTGVVIGGKVHVLHKGLSTVQVLDHMGL--GWTVEDYGWL-----------QGPMAIVHDSVYLMSH-GLIIKQHRDV- 265 (345)
Q Consensus 201 ~~~~~~~~~~iyv~gG~~~~i~~yd~~~~--~W~~~~~~~~-----------~~~~~~~~~~l~~~~~-~~i~~~d~~~- 265 (345)
..+-+..++.+|+.. ....+.++|+.++ .|+.....+. ..+.++.++.+|+.+. +.++.+|..+
T Consensus 198 ~~sP~v~~~~v~~~~-~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG 276 (394)
T PRK11138 198 ESAPATAFGGAIVGG-DNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSG 276 (394)
T ss_pred CCCCEEECCEEEEEc-CCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCC
Confidence 223345577777755 4567889998876 5864311110 2344567899998876 7899999876
Q ss_pred ---eEEeccchhhcccceeEEEEECCeEEEEcceecCCCCcccccccCceeeeccCCCCCceeE
Q 019186 266 ---RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQ 326 (345)
Q Consensus 266 ---W~~~~~~p~~~~r~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~ 326 (345)
|+.--.- . ..++..+++||+... . ..++.+|+++.+..|+.
T Consensus 277 ~~~W~~~~~~----~---~~~~~~~~~vy~~~~---~----------g~l~ald~~tG~~~W~~ 320 (394)
T PRK11138 277 QIVWKREYGS----V---NDFAVDGGRIYLVDQ---N----------DRVYALDTRGGVELWSQ 320 (394)
T ss_pred CEEEeecCCC----c---cCcEEECCEEEEEcC---C----------CeEEEEECCCCcEEEcc
Confidence 8763211 1 134566888998743 1 26788888777557864
No 52
>PLN02772 guanylate kinase
Probab=98.26 E-value=8.2e-06 Score=72.96 Aligned_cols=80 Identities=16% Similarity=0.216 Sum_probs=64.1
Q ss_pred CCceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCceEeC---CCCCccCCCceeEEEE-CCEEEEEec---Ccce
Q 019186 148 VPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPI---PDLHRTHNSACTGVVI-GGKVHVLHK---GLST 220 (345)
Q Consensus 148 ~~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~---~~~~~~~~~~~~~~~~-~~~iyv~gG---~~~~ 220 (345)
.++..++++.+++++|++||.++.....+.+++||..+++|..- +..|.+ |.+|+++++ +++|+|+++ ...+
T Consensus 23 ~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~-r~GhSa~v~~~~rilv~~~~~~~~~~ 101 (398)
T PLN02772 23 KPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKP-CKGYSAVVLNKDRILVIKKGSAPDDS 101 (398)
T ss_pred CCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCC-CCcceEEEECCceEEEEeCCCCCccc
Confidence 36788999999999999999887544678999999999999854 456777 778888877 688999975 4566
Q ss_pred EEEEECCC
Q 019186 221 VQVLDHMG 228 (345)
Q Consensus 221 i~~yd~~~ 228 (345)
+|.....+
T Consensus 102 ~w~l~~~t 109 (398)
T PLN02772 102 IWFLEVDT 109 (398)
T ss_pred eEEEEcCC
Confidence 77666544
No 53
>PF13854 Kelch_5: Kelch motif
Probab=98.26 E-value=2.7e-06 Score=50.95 Aligned_cols=40 Identities=15% Similarity=0.252 Sum_probs=35.1
Q ss_pred CCCCceeeeeeEeCCeEEEEcCcCC-CCCCCceEEEEeCCC
Q 019186 146 MLVPRAMFACCALKEKIVVAGGFTS-CRKSISQAEMYDPEK 185 (345)
Q Consensus 146 ~~~~r~~~~~~~~~~~iyv~gG~~~-~~~~~~~v~~yd~~~ 185 (345)
+|.+|..|++++++++||++||... .....+++++||..+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 4778999999999999999999983 556789999999876
No 54
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.14 E-value=0.0045 Score=56.60 Aligned_cols=172 Identities=17% Similarity=0.118 Sum_probs=98.8
Q ss_pred CceEEEeCCCCC--cccCCCCCC--CceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCC--ceEeCCCCCcc----
Q 019186 128 NEVWSYDPVTRQ--WSPRASMLV--PRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKD--VWVPIPDLHRT---- 197 (345)
Q Consensus 128 ~~~~~yd~~t~~--W~~~~~~~~--~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~---- 197 (345)
..++.+|+.+++ |+.-...+. .+...+.++.++.+|+ +..+ ..+..+|+++. .|+.--..+..
T Consensus 155 g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~-~~~~------g~v~ald~~tG~~~W~~~~~~~~g~~~~ 227 (377)
T TIGR03300 155 GRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLV-GFAG------GKLVALDLQTGQPLWEQRVALPKGRTEL 227 (377)
T ss_pred CeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEE-ECCC------CEEEEEEccCCCEeeeeccccCCCCCch
Confidence 357888987765 764322211 1222344555666554 3221 25888998876 47642111111
Q ss_pred ---CCCceeEEEECCEEEEEecCcceEEEEECCCC--CeeeccCCCCCCceEEEcCeEEEEeC-cEEEEecCCc----eE
Q 019186 198 ---HNSACTGVVIGGKVHVLHKGLSTVQVLDHMGL--GWTVEDYGWLQGPMAIVHDSVYLMSH-GLIIKQHRDV----RK 267 (345)
Q Consensus 198 ---~~~~~~~~~~~~~iyv~gG~~~~i~~yd~~~~--~W~~~~~~~~~~~~~~~~~~l~~~~~-~~i~~~d~~~----W~ 267 (345)
.....+.+..++.+|+.. ....+++||++++ .|+.-.. .....+..++.+|+... +.++.+|..+ |+
T Consensus 228 ~~~~~~~~~p~~~~~~vy~~~-~~g~l~a~d~~tG~~~W~~~~~--~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~ 304 (377)
T TIGR03300 228 ERLVDVDGDPVVDGGQVYAVS-YQGRVAALDLRSGRVLWKRDAS--SYQGPAVDDNRLYVTDADGVVVALDRRSGSELWK 304 (377)
T ss_pred hhhhccCCccEEECCEEEEEE-cCCEEEEEECCCCcEEEeeccC--CccCceEeCCEEEEECCCCeEEEEECCCCcEEEc
Confidence 001123345688888876 4668999999876 4765421 23344567899999876 7899998865 76
Q ss_pred EeccchhhcccceeEEEEECCeEEEEcceecCCCCcccccccCceeeeccCCCCCceeE
Q 019186 268 VVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQ 326 (345)
Q Consensus 268 ~~~~~p~~~~r~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~ 326 (345)
.-. +. .+.....+..++.||+.. .. ..++++|+.+.+..|+.
T Consensus 305 ~~~-~~---~~~~ssp~i~g~~l~~~~---~~----------G~l~~~d~~tG~~~~~~ 346 (377)
T TIGR03300 305 NDE-LK---YRQLTAPAVVGGYLVVGD---FE----------GYLHWLSREDGSFVARL 346 (377)
T ss_pred ccc-cc---CCccccCEEECCEEEEEe---CC----------CEEEEEECCCCCEEEEE
Confidence 532 11 222233344677777642 11 26788888777556644
No 55
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.12 E-value=2e-06 Score=53.04 Aligned_cols=41 Identities=29% Similarity=0.461 Sum_probs=35.3
Q ss_pred CCCChHHHHHHhhccCCCcchhhHHHhhHHHHHhhcChhhH
Q 019186 5 IEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELF 45 (345)
Q Consensus 5 ~~~lp~~~~~~~l~~~p~~~~~~~~~~~~~w~~~~~~~~~~ 45 (345)
|..||+|++.+|+..++..++.++..||+.|+.+..++.+-
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW 41 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLW 41 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhh
Confidence 67899999999999999999999999999999998776443
No 56
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.09 E-value=0.0041 Score=56.90 Aligned_cols=218 Identities=17% Similarity=0.133 Sum_probs=128.6
Q ss_pred CCCcEEEEEecCCCCeEEEEeCCCCC--EEeCCCCCccccccceeEEEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCce
Q 019186 53 SSENLLCVCAFDPENLWQLYDPLRDL--WITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEV 130 (345)
Q Consensus 53 ~~~~~l~v~gg~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~ 130 (345)
..++.+|+.+. ...++.+|+.+++ |+.- ++.. ...+.++.++.+|+.+. ...+
T Consensus 63 v~~~~v~v~~~--~g~v~a~d~~tG~~~W~~~--~~~~----~~~~p~v~~~~v~v~~~-----------------~g~l 117 (377)
T TIGR03300 63 VAGGKVYAADA--DGTVVALDAETGKRLWRVD--LDER----LSGGVGADGGLVFVGTE-----------------KGEV 117 (377)
T ss_pred EECCEEEEECC--CCeEEEEEccCCcEeeeec--CCCC----cccceEEcCCEEEEEcC-----------------CCEE
Confidence 34777777654 3579999998775 7643 2221 11234455777886543 2368
Q ss_pred EEEeCCCCC--cccCCCCCCCceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCc--eEeCCCCCc-cCCCceeEE
Q 019186 131 WSYDPVTRQ--WSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDV--WVPIPDLHR-THNSACTGV 205 (345)
Q Consensus 131 ~~yd~~t~~--W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~-~~~~~~~~~ 205 (345)
+.+|+.+++ |+.-.. .. .....++.++.+|+..+ ...+..+|+++.+ |+.-...+. ..+...+.+
T Consensus 118 ~ald~~tG~~~W~~~~~--~~-~~~~p~v~~~~v~v~~~-------~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~ 187 (377)
T TIGR03300 118 IALDAEDGKELWRAKLS--SE-VLSPPLVANGLVVVRTN-------DGRLTALDAATGERLWTYSRVTPALTLRGSASPV 187 (377)
T ss_pred EEEECCCCcEeeeeccC--ce-eecCCEEECCEEEEECC-------CCeEEEEEcCCCceeeEEccCCCceeecCCCCCE
Confidence 899987765 765322 11 12233445777777543 1348899988764 874322221 101122334
Q ss_pred EECCEEEEEecCcceEEEEECCCC--CeeeccCCCC-----------CCceEEEcCeEEEEeC-cEEEEecCCc----eE
Q 019186 206 VIGGKVHVLHKGLSTVQVLDHMGL--GWTVEDYGWL-----------QGPMAIVHDSVYLMSH-GLIIKQHRDV----RK 267 (345)
Q Consensus 206 ~~~~~iyv~gG~~~~i~~yd~~~~--~W~~~~~~~~-----------~~~~~~~~~~l~~~~~-~~i~~~d~~~----W~ 267 (345)
..++.+|+ +.....+.++|++++ .|+.-...+. .....+.++.+|+.+. +.++.+|.++ |+
T Consensus 188 ~~~~~v~~-~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~ 266 (377)
T TIGR03300 188 IADGGVLV-GFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWK 266 (377)
T ss_pred EECCEEEE-ECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEe
Confidence 56776654 334567999999876 5864321110 1233456888888775 7899999866 76
Q ss_pred EeccchhhcccceeEEEEECCeEEEEcceecCCCCcccccccCceeeeccCCCCCceeE
Q 019186 268 VVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQ 326 (345)
Q Consensus 268 ~~~~~p~~~~r~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~ 326 (345)
.-. + . ....+..+++||+... . ..++++|..+++..|+.
T Consensus 267 ~~~--~---~--~~~p~~~~~~vyv~~~---~----------G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 267 RDA--S---S--YQGPAVDDNRLYVTDA---D----------GVVVALDRRSGSELWKN 305 (377)
T ss_pred ecc--C---C--ccCceEeCCEEEEECC---C----------CeEEEEECCCCcEEEcc
Confidence 631 1 1 1234456888888642 1 26788888877667865
No 57
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.04 E-value=0.0028 Score=53.73 Aligned_cols=208 Identities=17% Similarity=0.194 Sum_probs=123.4
Q ss_pred CeEEEEeCCCCC--EEeCCCCCccccccceeE-EEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCC--cc
Q 019186 67 NLWQLYDPLRDL--WITLPVLPSKIRHLAHFG-VVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQ--WS 141 (345)
Q Consensus 67 ~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~-~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~--W~ 141 (345)
..+..+|+.+++ |+.- +... ...... .+..++.+|+..+ ...++.+|+.+++ |+
T Consensus 3 g~l~~~d~~tG~~~W~~~--~~~~--~~~~~~~~~~~~~~v~~~~~-----------------~~~l~~~d~~tG~~~W~ 61 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYD--LGPG--IGGPVATAVPDGGRVYVASG-----------------DGNLYALDAKTGKVLWR 61 (238)
T ss_dssp SEEEEEETTTTEEEEEEE--CSSS--CSSEEETEEEETTEEEEEET-----------------TSEEEEEETTTSEEEEE
T ss_pred CEEEEEECCCCCEEEEEE--CCCC--CCCccceEEEeCCEEEEEcC-----------------CCEEEEEECCCCCEEEE
Confidence 457788887774 7662 2111 012221 3447888999843 3579999998886 66
Q ss_pred cCCCCCCCceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCc--eE-eCCCCCcc-CCCceeEEEECCEEEEEecC
Q 019186 142 PRASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDV--WV-PIPDLHRT-HNSACTGVVIGGKVHVLHKG 217 (345)
Q Consensus 142 ~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~--W~-~~~~~~~~-~~~~~~~~~~~~~iyv~gG~ 217 (345)
.-. +... .......++.+|+... ...+..+|.++.+ |+ .....+.. ..........++.+|+.. .
T Consensus 62 ~~~--~~~~-~~~~~~~~~~v~v~~~-------~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 130 (238)
T PF13360_consen 62 FDL--PGPI-SGAPVVDGGRVYVGTS-------DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGT-S 130 (238)
T ss_dssp EEC--SSCG-GSGEEEETTEEEEEET-------TSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEE-T
T ss_pred eec--cccc-cceeeecccccccccc-------eeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEe-c
Confidence 543 2111 1124777888888862 1268999988764 98 34332222 123334455577787766 4
Q ss_pred cceEEEEECCCC--CeeeccCCCC-----------CCceEEEcCeEEEEeC-cEEEEecCCc----eEEeccchhhcccc
Q 019186 218 LSTVQVLDHMGL--GWTVEDYGWL-----------QGPMAIVHDSVYLMSH-GLIIKQHRDV----RKVVASASEFRRRI 279 (345)
Q Consensus 218 ~~~i~~yd~~~~--~W~~~~~~~~-----------~~~~~~~~~~l~~~~~-~~i~~~d~~~----W~~~~~~p~~~~r~ 279 (345)
...+.++|++++ .|+.....+. .......++.+|+... +.+..+|.++ |+.. .. .
T Consensus 131 ~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~w~~~--~~---~-- 203 (238)
T PF13360_consen 131 SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGEKLWSKP--IS---G-- 203 (238)
T ss_dssp CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTTEEEEEEC--SS------
T ss_pred cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEECCCCCEEEEec--CC---C--
Confidence 678999999877 4766433322 1233334678888887 4466667766 7332 21 1
Q ss_pred eeE-EEEECCeEEEEcceecCCCCcccccccCceeeeccCCCCCceeE
Q 019186 280 GFA-MIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQ 326 (345)
Q Consensus 280 ~~~-~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~ 326 (345)
..+ ...-++.||+.. . . ..+.++|+++++..|.+
T Consensus 204 ~~~~~~~~~~~l~~~~-~--~----------~~l~~~d~~tG~~~W~~ 238 (238)
T PF13360_consen 204 IYSLPSVDGGTLYVTS-S--D----------GRLYALDLKTGKVVWQQ 238 (238)
T ss_dssp ECECEECCCTEEEEEE-T--T----------TEEEEEETTTTEEEEEE
T ss_pred ccCCceeeCCEEEEEe-C--C----------CEEEEEECCCCCEEeEC
Confidence 122 344567777765 1 1 37899999998667864
No 58
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=97.98 E-value=0.0037 Score=55.95 Aligned_cols=38 Identities=18% Similarity=0.343 Sum_probs=33.3
Q ss_pred CCCCChHHHHHHhhccC-CCcchhhHHHhhHHHHHhhcC
Q 019186 4 LIEGLPDAVALRCLARV-PFFLHPKLELVSRSWRAAIRS 41 (345)
Q Consensus 4 ~~~~lp~~~~~~~l~~~-p~~~~~~~~~~~~~w~~~~~~ 41 (345)
.|+.||+||+..|..|+ ......+++.||+.||+.+..
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 58899999999999999 556899999999999986653
No 59
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=97.82 E-value=5.5e-06 Score=51.28 Aligned_cols=44 Identities=32% Similarity=0.508 Sum_probs=36.3
Q ss_pred CCCCChHHHHHHhhccCCCcchhhHHHhhHHHHHhhcChhhHHH
Q 019186 4 LIEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELFKA 47 (345)
Q Consensus 4 ~~~~lp~~~~~~~l~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~ 47 (345)
.|..||+|++.+|+.+++..++..+..+|++|+.+..++.+...
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~ 45 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKK 45 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHH
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHH
Confidence 35679999999999999999999999999999999988766543
No 60
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.81 E-value=0.011 Score=50.00 Aligned_cols=178 Identities=16% Similarity=0.182 Sum_probs=107.8
Q ss_pred CCcEEEEEecCCCCeEEEEeCCCCC--EEeCCCCCccccccceeEEEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCceE
Q 019186 54 SENLLCVCAFDPENLWQLYDPLRDL--WITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVW 131 (345)
Q Consensus 54 ~~~~l~v~gg~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~ 131 (345)
.++.+|+.. ....++++|+.+++ |+.-. +.+ ........++.||+.... ..++
T Consensus 35 ~~~~v~~~~--~~~~l~~~d~~tG~~~W~~~~--~~~----~~~~~~~~~~~v~v~~~~-----------------~~l~ 89 (238)
T PF13360_consen 35 DGGRVYVAS--GDGNLYALDAKTGKVLWRFDL--PGP----ISGAPVVDGGRVYVGTSD-----------------GSLY 89 (238)
T ss_dssp ETTEEEEEE--TTSEEEEEETTTSEEEEEEEC--SSC----GGSGEEEETTEEEEEETT-----------------SEEE
T ss_pred eCCEEEEEc--CCCEEEEEECCCCCEEEEeec--ccc----ccceeeecccccccccce-----------------eeeE
Confidence 366777764 46789999998885 55432 332 111246778999888732 3689
Q ss_pred EEeCCCCC--cc-cCCCCCC--CceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCc--eEeCCCCCcc-C-----
Q 019186 132 SYDPVTRQ--WS-PRASMLV--PRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDV--WVPIPDLHRT-H----- 198 (345)
Q Consensus 132 ~yd~~t~~--W~-~~~~~~~--~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~-~----- 198 (345)
.+|..+++ |+ .....+. ........+.++.+|+... ...+..+|+++.+ |+.-...+.. .
T Consensus 90 ~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~ 162 (238)
T PF13360_consen 90 ALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS-------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSF 162 (238)
T ss_dssp EEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET-------CSEEEEEETTTTEEEEEEESSTT-SS--EEEE
T ss_pred ecccCCcceeeeeccccccccccccccCceEecCEEEEEec-------cCcEEEEecCCCcEEEEeecCCCCCCcceeee
Confidence 99988876 88 3433222 2233344445777777654 2358999999875 7753333221 0
Q ss_pred -CCceeEEEECCEEEEEecCcceEEEEECCCCC--eeeccCCCCCCceEEEcCeEEEEeC-cEEEEecCCc
Q 019186 199 -NSACTGVVIGGKVHVLHKGLSTVQVLDHMGLG--WTVEDYGWLQGPMAIVHDSVYLMSH-GLIIKQHRDV 265 (345)
Q Consensus 199 -~~~~~~~~~~~~iyv~gG~~~~i~~yd~~~~~--W~~~~~~~~~~~~~~~~~~l~~~~~-~~i~~~d~~~ 265 (345)
......+..++.+|+..+. ..+..+|..+++ |+.. ...........++.+|+... +.++.+|.++
T Consensus 163 ~~~~~~~~~~~~~v~~~~~~-g~~~~~d~~tg~~~w~~~-~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 163 SDINGSPVISDGRVYVSSGD-GRVVAVDLATGEKLWSKP-ISGIYSLPSVDGGTLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp TTEEEEEECCTTEEEEECCT-SSEEEEETTTTEEEEEEC-SS-ECECEECCCTEEEEEETTTEEEEEETTT
T ss_pred cccccceEEECCEEEEEcCC-CeEEEEECCCCCEEEEec-CCCccCCceeeCCEEEEEeCCCEEEEEECCC
Confidence 0112333446889988753 335666999886 8443 11112224556788888874 8999999887
No 61
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=97.70 E-value=3.5e-05 Score=45.72 Aligned_cols=37 Identities=35% Similarity=0.541 Sum_probs=34.3
Q ss_pred ChHHHHHHhhccCCCcchhhHHHhhHHHHHhhcChhh
Q 019186 8 LPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPEL 44 (345)
Q Consensus 8 lp~~~~~~~l~~~p~~~~~~~~~~~~~w~~~~~~~~~ 44 (345)
||+|++.+|+.+++...+..+..+|++|+.+...+.+
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~ 37 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDF 37 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhh
Confidence 7999999999999999999999999999999887654
No 62
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.63 E-value=0.0028 Score=56.98 Aligned_cols=120 Identities=13% Similarity=0.132 Sum_probs=80.2
Q ss_pred ECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccCCCCCCCceeeeeeEeCCeEEEEcCcCCCCCCC----
Q 019186 100 TAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSI---- 175 (345)
Q Consensus 100 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~~~---- 175 (345)
.+++|+.++.. ..+.+||..+..-...|.+..+.....++.++++||++..........
T Consensus 75 ~gskIv~~d~~-----------------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~ 137 (342)
T PF07893_consen 75 HGSKIVAVDQS-----------------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDF 137 (342)
T ss_pred cCCeEEEEcCC-----------------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccc
Confidence 58899998653 348899999998888888777666666777799999997764221110
Q ss_pred ceEEEE--e--------CCCCceEeCCCCCccCCC------ceeEEEE-CCEEEEEe-cCcceEEEEECCCCCeeeccC
Q 019186 176 SQAEMY--D--------PEKDVWVPIPDLHRTHNS------ACTGVVI-GGKVHVLH-KGLSTVQVLDHMGLGWTVEDY 236 (345)
Q Consensus 176 ~~v~~y--d--------~~~~~W~~~~~~~~~~~~------~~~~~~~-~~~iyv~g-G~~~~i~~yd~~~~~W~~~~~ 236 (345)
..+|++ + ....+|+.++++|-.... -.+-+++ +..|+|.- +.....++||..+.+|+.+.+
T Consensus 138 ~~FE~l~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~~~Gd 216 (342)
T PF07893_consen 138 PCFEALVYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWRKHGD 216 (342)
T ss_pred eeEEEeccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCceEEEEEEcCCcceeeccc
Confidence 144444 4 223368888776644111 2344566 66788843 222358999999999999864
No 63
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.29 E-value=0.04 Score=46.90 Aligned_cols=156 Identities=12% Similarity=0.037 Sum_probs=100.3
Q ss_pred ceeEEEE-ECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccCCCCCCCceeeeeeEeCCeEEEEcCcCCC
Q 019186 93 AHFGVVS-TAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSC 171 (345)
Q Consensus 93 ~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~ 171 (345)
+-.++.. .++.+|.-.|..+ .+.+.++|+.|++-.+..+++..-.+=++++++++||.+--.+
T Consensus 46 FTQGL~~~~~g~LyESTG~yG--------------~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~-- 109 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYG--------------QSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKE-- 109 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTT--------------EEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSS--
T ss_pred cCccEEecCCCEEEEeCCCCC--------------cEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecC--
Confidence 4445666 6889999888753 5789999999998766666777667789999999999996543
Q ss_pred CCCCceEEEEeCCCCceEeCCCCCccCCCceeEEEECCEEEEEecCcceEEEEECCCCCeee---cc-CCCC---CCceE
Q 019186 172 RKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTV---ED-YGWL---QGPMA 244 (345)
Q Consensus 172 ~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~i~~yd~~~~~W~~---~~-~~~~---~~~~~ 244 (345)
....+||+.+- +.+..++.+ ..+-+.+..+..+++..| ++.++..||++-+=.. +. ...+ ---+.
T Consensus 110 ----~~~f~yd~~tl--~~~~~~~y~-~EGWGLt~dg~~Li~SDG-S~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE 181 (264)
T PF05096_consen 110 ----GTGFVYDPNTL--KKIGTFPYP-GEGWGLTSDGKRLIMSDG-SSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELE 181 (264)
T ss_dssp ----SEEEEEETTTT--EEEEEEE-S-SS--EEEECSSCEEEE-S-SSEEEEE-TTT-SEEEEEE-EETTEE---EEEEE
T ss_pred ----CeEEEEccccc--eEEEEEecC-CcceEEEcCCCEEEEECC-ccceEEECCcccceEEEEEEEECCEECCCcEeEE
Confidence 45899999763 444444444 445666666777888876 8889999987532211 11 1111 12345
Q ss_pred EEcCeEEEEeC--cEEEEecCCc-----eEEeccc
Q 019186 245 IVHDSVYLMSH--GLIIKQHRDV-----RKVVASA 272 (345)
Q Consensus 245 ~~~~~l~~~~~--~~i~~~d~~~-----W~~~~~~ 272 (345)
.++|.||.--. ..|.+.||++ |-.+..+
T Consensus 182 ~i~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L 216 (264)
T PF05096_consen 182 YINGKIYANVWQTDRIVRIDPETGKVVGWIDLSGL 216 (264)
T ss_dssp EETTEEEEEETTSSEEEEEETTT-BEEEEEE-HHH
T ss_pred EEcCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHh
Confidence 56777776554 8999999988 6655444
No 64
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=97.26 E-value=0.003 Score=53.28 Aligned_cols=102 Identities=16% Similarity=0.147 Sum_probs=70.7
Q ss_pred EEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcc-----------cCCCCCCCceeeeeeEe----CCeEEEEcCc
Q 019186 104 LFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWS-----------PRASMLVPRAMFACCAL----KEKIVVAGGF 168 (345)
Q Consensus 104 lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~-----------~~~~~~~~r~~~~~~~~----~~~iyv~gG~ 168 (345)
-+|.||..-+ ...++.+|+....+.... .+++.|.+|++|++.++ +...++|||+
T Consensus 41 YlIHGGrTPN----------NElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGR 110 (337)
T PF03089_consen 41 YLIHGGRTPN----------NELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGR 110 (337)
T ss_pred EEecCCcCCC----------cccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCc
Confidence 4466776433 236778888766554422 15688999999999877 3457889998
Q ss_pred CCC-------------CCCCceEEEEeCCCCceE--eCCCCCccCCCceeEEEECCEEEEEec
Q 019186 169 TSC-------------RKSISQAEMYDPEKDVWV--PIPDLHRTHNSACTGVVIGGKVHVLHK 216 (345)
Q Consensus 169 ~~~-------------~~~~~~v~~yd~~~~~W~--~~~~~~~~~~~~~~~~~~~~~iyv~gG 216 (345)
+.. -+....|+..|++-+-.+ .++.+.+. ..+|.+.+-++.+|++||
T Consensus 111 SY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG-~SFHvslar~D~VYilGG 172 (337)
T PF03089_consen 111 SYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDG-QSFHVSLARNDCVYILGG 172 (337)
T ss_pred ccCCccccchhhcceeccCCCeEEEEeccccccccccchhhcCC-eEEEEEEecCceEEEEcc
Confidence 621 112357788888776554 45666667 778888888999999999
No 65
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=97.25 E-value=0.019 Score=49.74 Aligned_cols=106 Identities=18% Similarity=0.256 Sum_probs=67.6
Q ss_pred cCceEEEeCCCCCcccCCCCCCCceeeeeeEe-CCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCC-----CCccCCC
Q 019186 127 TNEVWSYDPVTRQWSPRASMLVPRAMFACCAL-KEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPD-----LHRTHNS 200 (345)
Q Consensus 127 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~-----~~~~~~~ 200 (345)
...+..||..+.+|..+..--.. .-..+... ++++|+.|-..-.+.....+..||.++.+|..++. +|.+ ..
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G-~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgp-v~ 92 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISG-TVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGP-VT 92 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceE-EEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCc-EE
Confidence 56899999999999998764221 22344434 67888877655333246679999999999988866 2333 21
Q ss_pred ceeEEEEC-CEEEEEec---CcceEEEEECCCCCeeeccC
Q 019186 201 ACTGVVIG-GKVHVLHK---GLSTVQVLDHMGLGWTVEDY 236 (345)
Q Consensus 201 ~~~~~~~~-~~iyv~gG---~~~~i~~yd~~~~~W~~~~~ 236 (345)
.......+ ..+++.|. ....+..| +..+|+.+..
T Consensus 93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSANGSTFLMKY--DGSSWSSIGS 130 (281)
T ss_pred EEEeeccCCceEEEeceecCCCceEEEE--cCCceEeccc
Confidence 11112223 35776664 34456666 4678998866
No 66
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.05 E-value=0.051 Score=46.41 Aligned_cols=181 Identities=16% Similarity=0.094 Sum_probs=102.6
Q ss_pred CcEEEEEecCCCCeEEEEeCCCCCEEeCCCCCccccccceeEEEEE--CCEEEEEcCCCCCCCCCCCCCCCCcCcCceEE
Q 019186 55 ENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVST--AGKLFVLGGGSDAVDPLTGDQDGSFATNEVWS 132 (345)
Q Consensus 55 ~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~ 132 (345)
++.||+.. .....++.+|+.+++-..... +. -.+++.. ++.+|+.... ...+
T Consensus 11 ~g~l~~~D-~~~~~i~~~~~~~~~~~~~~~-~~------~~G~~~~~~~g~l~v~~~~------------------~~~~ 64 (246)
T PF08450_consen 11 DGRLYWVD-IPGGRIYRVDPDTGEVEVIDL-PG------PNGMAFDRPDGRLYVADSG------------------GIAV 64 (246)
T ss_dssp TTEEEEEE-TTTTEEEEEETTTTEEEEEES-SS------EEEEEEECTTSEEEEEETT------------------CEEE
T ss_pred CCEEEEEE-cCCCEEEEEECCCCeEEEEec-CC------CceEEEEccCCEEEEEEcC------------------ceEE
Confidence 45666664 345689999999887654322 21 2234444 6888888642 4566
Q ss_pred EeCCCCCcccCCCCC-----CCceeeeeeEeCCeEEEEcCcCCCCCCC--ceEEEEeCCCCceEeCCCCCccCCCceeEE
Q 019186 133 YDPVTRQWSPRASML-----VPRAMFACCALKEKIVVAGGFTSCRKSI--SQAEMYDPEKDVWVPIPDLHRTHNSACTGV 205 (345)
Q Consensus 133 yd~~t~~W~~~~~~~-----~~r~~~~~~~~~~~iyv~gG~~~~~~~~--~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~ 205 (345)
+|+.+++++.+...+ ..+..-.++.-+|.+|+-.-........ ..++.+++. .+.+.+..- . ....+.+
T Consensus 65 ~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~--~-~~pNGi~ 140 (246)
T PF08450_consen 65 VDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG--L-GFPNGIA 140 (246)
T ss_dssp EETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE--E-SSEEEEE
T ss_pred EecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC--c-ccccceE
Confidence 799999888766542 2233333334478888764322111111 578999998 555544221 1 1122333
Q ss_pred EE-CC-EEEEEecCcceEEEEECCCCC--ee------eccCCCC-CCceEE-EcCeEEEE--eCcEEEEecCCc
Q 019186 206 VI-GG-KVHVLHKGLSTVQVLDHMGLG--WT------VEDYGWL-QGPMAI-VHDSVYLM--SHGLIIKQHRDV 265 (345)
Q Consensus 206 ~~-~~-~iyv~gG~~~~i~~yd~~~~~--W~------~~~~~~~-~~~~~~-~~~~l~~~--~~~~i~~~d~~~ 265 (345)
.. ++ .+|+.--....|++|++.... +. ..+.... +-.+++ .+|+||+. +++.|..|+++.
T Consensus 141 ~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G 214 (246)
T PF08450_consen 141 FSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDG 214 (246)
T ss_dssp EETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTS
T ss_pred ECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCc
Confidence 32 34 688876567889999986433 32 1222211 122333 37899998 459999999986
No 67
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.03 E-value=0.081 Score=46.09 Aligned_cols=170 Identities=13% Similarity=0.056 Sum_probs=80.9
Q ss_pred CceEEEeCCCCCcccCCCCCCCceeeeeeEe-C-CeEEEEcCcCCCCCCCceEEEEeCCCCceEe-CCCCCccCCCceeE
Q 019186 128 NEVWSYDPVTRQWSPRASMLVPRAMFACCAL-K-EKIVVAGGFTSCRKSISQAEMYDPEKDVWVP-IPDLHRTHNSACTG 204 (345)
Q Consensus 128 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~-~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~~~~~~~~ 204 (345)
..+.+||+.+++-...-.... . ..+++.. + ..+|+.++.. ..+.+||..+.+... +...... ....
T Consensus 11 ~~v~~~d~~t~~~~~~~~~~~-~-~~~l~~~~dg~~l~~~~~~~------~~v~~~d~~~~~~~~~~~~~~~~---~~~~ 79 (300)
T TIGR03866 11 NTISVIDTATLEVTRTFPVGQ-R-PRGITLSKDGKLLYVCASDS------DTIQVIDLATGEVIGTLPSGPDP---ELFA 79 (300)
T ss_pred CEEEEEECCCCceEEEEECCC-C-CCceEECCCCCEEEEEECCC------CeEEEEECCCCcEEEeccCCCCc---cEEE
Confidence 468888887765322211111 1 1122222 3 3566766532 458899998876543 2211111 1111
Q ss_pred EEEC-CEEEEEecCcceEEEEECCCCCee-eccCCCCCCceE-EEcCeEEEEeC---cEEEEecCCceEEeccchhhccc
Q 019186 205 VVIG-GKVHVLHKGLSTVQVLDHMGLGWT-VEDYGWLQGPMA-IVHDSVYLMSH---GLIIKQHRDVRKVVASASEFRRR 278 (345)
Q Consensus 205 ~~~~-~~iyv~gG~~~~i~~yd~~~~~W~-~~~~~~~~~~~~-~~~~~l~~~~~---~~i~~~d~~~W~~~~~~p~~~~r 278 (345)
..-+ +.+|+.++....+..||+.+.+-. ..........++ ..++.+++.+. ..+..+|.++.+.+...+. ..+
T Consensus 80 ~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~ 158 (300)
T TIGR03866 80 LHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQR 158 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCC
Confidence 2223 457776655568999999875422 221111112222 23566666654 3566778776333322221 112
Q ss_pred ceeEEEEECCeEEEEcceecCCCCcccccccCceeeeccCCC
Q 019186 279 IGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE 320 (345)
Q Consensus 279 ~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~yd~~~~ 320 (345)
..+....-+++.+++++... ..+.+||+++.
T Consensus 159 ~~~~~~s~dg~~l~~~~~~~-----------~~v~i~d~~~~ 189 (300)
T TIGR03866 159 PRFAEFTADGKELWVSSEIG-----------GTVSVIDVATR 189 (300)
T ss_pred ccEEEECCCCCEEEEEcCCC-----------CEEEEEEcCcc
Confidence 22222333555554444222 25677777654
No 68
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.00 E-value=0.13 Score=43.89 Aligned_cols=190 Identities=16% Similarity=0.105 Sum_probs=105.9
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccCCCCCCCceeeeeeEe--CCeEEEEcCcCCCCCCCceE
Q 019186 101 AGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPRASMLVPRAMFACCAL--KEKIVVAGGFTSCRKSISQA 178 (345)
Q Consensus 101 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~gG~~~~~~~~~~v 178 (345)
++.||+..-. ...++++++.+++-+...... ..++++. ++.+|+..... .
T Consensus 11 ~g~l~~~D~~----------------~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~~g~l~v~~~~~--------~ 62 (246)
T PF08450_consen 11 DGRLYWVDIP----------------GGRIYRVDPDTGEVEVIDLPG----PNGMAFDRPDGRLYVADSGG--------I 62 (246)
T ss_dssp TTEEEEEETT----------------TTEEEEEETTTTEEEEEESSS----EEEEEEECTTSEEEEEETTC--------E
T ss_pred CCEEEEEEcC----------------CCEEEEEECCCCeEEEEecCC----CceEEEEccCCEEEEEEcCc--------e
Confidence 5778887532 457999999988755432212 2334433 78888886422 5
Q ss_pred EEEeCCCCceEeCCCCCcc--CCCcee--EEEECCEEEEEec------Cc--ceEEEEECCCCCeeeccCCCC-CCceEE
Q 019186 179 EMYDPEKDVWVPIPDLHRT--HNSACT--GVVIGGKVHVLHK------GL--STVQVLDHMGLGWTVEDYGWL-QGPMAI 245 (345)
Q Consensus 179 ~~yd~~~~~W~~~~~~~~~--~~~~~~--~~~~~~~iyv~gG------~~--~~i~~yd~~~~~W~~~~~~~~-~~~~~~ 245 (345)
.++|+.+.+++.+...+.. ...... ++.-+|.+|+..- .. ..++++++. ++.+.+..... ...++.
T Consensus 63 ~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~ 141 (246)
T PF08450_consen 63 AVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAF 141 (246)
T ss_dssp EEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEE
T ss_pred EEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEE
Confidence 6679999998877554311 022222 2233778988742 11 579999998 66655543322 223333
Q ss_pred -EcC-eEEEEeC--cEEEEecCCc----eE---EeccchhhcccceeEEEEE-CCeEEEEcceecCCCCcccccccCcee
Q 019186 246 -VHD-SVYLMSH--GLIIKQHRDV----RK---VVASASEFRRRIGFAMIGM-GDDIYVIGGVIGPDRWNWDIKPMSDVD 313 (345)
Q Consensus 246 -~~~-~l~~~~~--~~i~~~d~~~----W~---~~~~~p~~~~r~~~~~~~~-~~~l~i~GG~~~~~~~~~~~~~~~~v~ 313 (345)
.++ .||+... ..|+.|+.+. +. .+..++. .....-+++.- ++.||+..- .. ..|.
T Consensus 142 s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~g~pDG~~vD~~G~l~va~~--~~----------~~I~ 208 (246)
T PF08450_consen 142 SPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPG-GPGYPDGLAVDSDGNLWVADW--GG----------GRIV 208 (246)
T ss_dssp ETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SS-SSCEEEEEEEBTTS-EEEEEE--TT----------TEEE
T ss_pred CCcchheeecccccceeEEEeccccccceeeeeeEEEcCC-CCcCCCcceEcCCCCEEEEEc--CC----------CEEE
Confidence 234 5787766 7899998753 22 2222221 11123455543 678888622 11 3799
Q ss_pred eeccCCCCCceeEcCCCCCcce
Q 019186 314 VLTVGAERPTWRQVSPMTRCRG 335 (345)
Q Consensus 314 ~yd~~~~~~~W~~v~~~~~~r~ 335 (345)
+||++.. =...-++|.++.
T Consensus 209 ~~~p~G~---~~~~i~~p~~~~ 227 (246)
T PF08450_consen 209 VFDPDGK---LLREIELPVPRP 227 (246)
T ss_dssp EEETTSC---EEEEEE-SSSSE
T ss_pred EECCCcc---EEEEEcCCCCCE
Confidence 9999954 334445665543
No 69
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=96.98 E-value=0.034 Score=50.09 Aligned_cols=184 Identities=11% Similarity=0.024 Sum_probs=104.6
Q ss_pred CcEEEEEecCCCCeEEEEeCCCCCEEeCCCCCccccccceeEEEEECCE-EEEEcCCCCCCCCCCCCCCCCcCcCceEEE
Q 019186 55 ENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGK-LFVLGGGSDAVDPLTGDQDGSFATNEVWSY 133 (345)
Q Consensus 55 ~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~-lyv~GG~~~~~~~~~~~~~~~~~~~~~~~y 133 (345)
...+.+.|-+..-.++.-|-.+|. .+.++.....+......+- +|. ..+++|. ..-++.|
T Consensus 225 ~plllvaG~d~~lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p-~G~~~i~~s~r----------------rky~ysy 285 (514)
T KOG2055|consen 225 APLLLVAGLDGTLRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAP-NGHSVIFTSGR----------------RKYLYSY 285 (514)
T ss_pred CceEEEecCCCcEEEEEecCccCh--hheeeeeccCccceeeecC-CCceEEEeccc----------------ceEEEEe
Confidence 444555454445566777777775 4444433211122222222 444 7777775 3468999
Q ss_pred eCCCCCcccCCCCCCC--cee-eeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeEEEECCE
Q 019186 134 DPVTRQWSPRASMLVP--RAM-FACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGK 210 (345)
Q Consensus 134 d~~t~~W~~~~~~~~~--r~~-~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 210 (345)
|..+.+-.++.++... +.- ..-+..++.+.++-|..+. +......|+.|..-=.+... ....+....+..
T Consensus 286 Dle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~------I~lLhakT~eli~s~KieG~-v~~~~fsSdsk~ 358 (514)
T KOG2055|consen 286 DLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGH------IHLLHAKTKELITSFKIEGV-VSDFTFSSDSKE 358 (514)
T ss_pred eccccccccccCCCCcccchhheeEecCCCCeEEEcccCce------EEeehhhhhhhhheeeeccE-EeeEEEecCCcE
Confidence 9999998888765421 122 2223346667777776643 67777778877533222222 222222233456
Q ss_pred EEEEecCcceEEEEECCCCC----eeeccCCCCCCceEEEcCeEEEEeC--cEEEEecCCc
Q 019186 211 VHVLHKGLSTVQVLDHMGLG----WTVEDYGWLQGPMAIVHDSVYLMSH--GLIIKQHRDV 265 (345)
Q Consensus 211 iyv~gG~~~~i~~yd~~~~~----W~~~~~~~~~~~~~~~~~~l~~~~~--~~i~~~d~~~ 265 (345)
|+++|| ...++.+|+.++. |..-...-...-+...++..+..|. +-+-.||.++
T Consensus 359 l~~~~~-~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 359 LLASGG-TGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred EEEEcC-CceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccch
Confidence 777775 5689999998873 4433222112233346778777776 7777888665
No 70
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.95 E-value=0.034 Score=50.06 Aligned_cols=112 Identities=13% Similarity=0.144 Sum_probs=77.7
Q ss_pred EeCCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeEEEECCEEEEEecC----cc------eEEEE--
Q 019186 157 ALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKG----LS------TVQVL-- 224 (345)
Q Consensus 157 ~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~iyv~gG~----~~------~i~~y-- 224 (345)
+.+.+|+.++.. ..+.+||.++..-...+.+..+ .....++.++++||++... .. .++.+
T Consensus 74 l~gskIv~~d~~-------~~t~vyDt~t~av~~~P~l~~p-k~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~ 145 (342)
T PF07893_consen 74 LHGSKIVAVDQS-------GRTLVYDTDTRAVATGPRLHSP-KRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVY 145 (342)
T ss_pred ecCCeEEEEcCC-------CCeEEEECCCCeEeccCCCCCC-CcceEEEEeCCeEEEeeccCccccccCccceeEEEecc
Confidence 358899888654 3389999999988888887777 5556777889999999761 11 44444
Q ss_pred E--------CCCCCeeeccCCCC---C-------CceEEE-cCeEEEEeC-c--EEEEecCCc--eEEeccchhhc
Q 019186 225 D--------HMGLGWTVEDYGWL---Q-------GPMAIV-HDSVYLMSH-G--LIIKQHRDV--RKVVASASEFR 276 (345)
Q Consensus 225 d--------~~~~~W~~~~~~~~---~-------~~~~~~-~~~l~~~~~-~--~i~~~d~~~--W~~~~~~p~~~ 276 (345)
+ .....|+.+++.+. . .+.+++ +..|++--. . ..|.||.++ |+++.++..++
T Consensus 146 ~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~~~GdW~LPF 221 (342)
T PF07893_consen 146 RPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWRKHGDWMLPF 221 (342)
T ss_pred ccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCceEEEEEEcCCcceeeccceecCc
Confidence 3 22337888877555 1 234566 667777333 4 799999988 99998876433
No 71
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.79 E-value=0.027 Score=47.89 Aligned_cols=103 Identities=13% Similarity=0.111 Sum_probs=72.8
Q ss_pred CCCCCccCCCceeEEE--ECCEEEEEec--CcceEEEEECCCCCeeeccCCC---CCCceEEEcCeEEEEeC--cEEEEe
Q 019186 191 IPDLHRTHNSACTGVV--IGGKVHVLHK--GLSTVQVLDHMGLGWTVEDYGW---LQGPMAIVHDSVYLMSH--GLIIKQ 261 (345)
Q Consensus 191 ~~~~~~~~~~~~~~~~--~~~~iyv~gG--~~~~i~~yd~~~~~W~~~~~~~---~~~~~~~~~~~l~~~~~--~~i~~~ 261 (345)
+...|+....+..+.. .++.+|...| ..+.+..+|+.+++-......+ +.-.++.++++||.+.. ...+.|
T Consensus 36 v~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~y 115 (264)
T PF05096_consen 36 VETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVY 115 (264)
T ss_dssp EEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEE
T ss_pred EEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEE
Confidence 3344433244444443 5789999988 6788999999999765443333 36678889999999998 899999
Q ss_pred cCCceEEeccchhhcccceeEEEEECCeEEEEcc
Q 019186 262 HRDVRKVVASASEFRRRIGFAMIGMGDDIYVIGG 295 (345)
Q Consensus 262 d~~~W~~~~~~p~~~~r~~~~~~~~~~~l~i~GG 295 (345)
|.++.+++...+ .+..+.+++.-++.+++.-|
T Consensus 116 d~~tl~~~~~~~--y~~EGWGLt~dg~~Li~SDG 147 (264)
T PF05096_consen 116 DPNTLKKIGTFP--YPGEGWGLTSDGKRLIMSDG 147 (264)
T ss_dssp ETTTTEEEEEEE---SSS--EEEECSSCEEEE-S
T ss_pred ccccceEEEEEe--cCCcceEEEcCCCEEEEECC
Confidence 999988888776 45678889988888888766
No 72
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=96.77 E-value=0.37 Score=43.06 Aligned_cols=247 Identities=12% Similarity=-0.019 Sum_probs=115.4
Q ss_pred CcEEEEEecCCCCeEEEEeCC-CCCEEeCCCCCccccccceeEEEEE-CC-EEEEEcCCCCCCCCCCCCCCCCcCcCceE
Q 019186 55 ENLLCVCAFDPENLWQLYDPL-RDLWITLPVLPSKIRHLAHFGVVST-AG-KLFVLGGGSDAVDPLTGDQDGSFATNEVW 131 (345)
Q Consensus 55 ~~~l~v~gg~~~~~~~~yd~~-~~~W~~~~~~~~~~~~~~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~~~~~~~~ 131 (345)
+..||+.+. ....+..|+.. +++++.....+.. ....+ ++.. ++ .+|+.. + ....+.
T Consensus 46 ~~~lyv~~~-~~~~i~~~~~~~~g~l~~~~~~~~~--~~p~~-i~~~~~g~~l~v~~-~---------------~~~~v~ 105 (330)
T PRK11028 46 KRHLYVGVR-PEFRVLSYRIADDGALTFAAESPLP--GSPTH-ISTDHQGRFLFSAS-Y---------------NANCVS 105 (330)
T ss_pred CCEEEEEEC-CCCcEEEEEECCCCceEEeeeecCC--CCceE-EEECCCCCEEEEEE-c---------------CCCeEE
Confidence 667777654 45677778775 4566655433322 11222 3333 44 466654 2 134577
Q ss_pred EEeCCCCC--cccCCCCCCCceeeeeeEe-C-CeEEEEcCcCCCCCCCceEEEEeCCCCc-eEeCC----CCCccCCCce
Q 019186 132 SYDPVTRQ--WSPRASMLVPRAMFACCAL-K-EKIVVAGGFTSCRKSISQAEMYDPEKDV-WVPIP----DLHRTHNSAC 202 (345)
Q Consensus 132 ~yd~~t~~--W~~~~~~~~~r~~~~~~~~-~-~~iyv~gG~~~~~~~~~~v~~yd~~~~~-W~~~~----~~~~~~~~~~ 202 (345)
+|+..++. .+.+..++....-|.++.. + ..+|+..-. .+.+.+||..+.. ..... ..+......+
T Consensus 106 v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~------~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~ 179 (330)
T PRK11028 106 VSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLK------EDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRH 179 (330)
T ss_pred EEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCC------CCEEEEEEECCCCcccccCCCceecCCCCCCce
Confidence 77775432 1222222222223444333 3 356655421 3569999987632 21100 1111101111
Q ss_pred eEEEE-CCEEEEEecCcceEEEEECC--CCCeee---ccCCCC-----CC--ceEE-EcC-eEEEEeC--cEEEEecCC-
Q 019186 203 TGVVI-GGKVHVLHKGLSTVQVLDHM--GLGWTV---EDYGWL-----QG--PMAI-VHD-SVYLMSH--GLIIKQHRD- 264 (345)
Q Consensus 203 ~~~~~-~~~iyv~gG~~~~i~~yd~~--~~~W~~---~~~~~~-----~~--~~~~-~~~-~l~~~~~--~~i~~~d~~- 264 (345)
..+.- +..+|+.....+.+..||.. +++.+. +...+. .. .+.. .++ .+|+.+. +.|..|+.+
T Consensus 180 ~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 180 MVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred EEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence 22222 34688886556888888876 345433 221111 11 1111 244 4777644 566666542
Q ss_pred -c--eEEeccchhh-cccceeEEEEECCeEEEEcceecCCCCcccccccCceeee--ccCCCCCceeEcCCCCCcceeEE
Q 019186 265 -V--RKVVASASEF-RRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVL--TVGAERPTWRQVSPMTRCRGTIL 338 (345)
Q Consensus 265 -~--W~~~~~~p~~-~~r~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~y--d~~~~~~~W~~v~~~~~~r~~~~ 338 (345)
. ++.+...+.. .+|. ..+..-+..||+... .. +.|.+| |..++ .+..+...+..... .
T Consensus 260 ~~~~~~~~~~~~~~~~p~~-~~~~~dg~~l~va~~-~~-----------~~v~v~~~~~~~g--~l~~~~~~~~g~~P-~ 323 (330)
T PRK11028 260 DGSVLSFEGHQPTETQPRG-FNIDHSGKYLIAAGQ-KS-----------HHISVYEIDGETG--LLTELGRYAVGQGP-M 323 (330)
T ss_pred CCCeEEEeEEEeccccCCc-eEECCCCCEEEEEEc-cC-----------CcEEEEEEcCCCC--cEEEccccccCCCc-e
Confidence 2 5545444321 1221 111112445666532 11 245555 55666 78777777776665 3
Q ss_pred eeeee
Q 019186 339 GCTQL 343 (345)
Q Consensus 339 ~~~~~ 343 (345)
.++++
T Consensus 324 ~~~~~ 328 (330)
T PRK11028 324 WVSVL 328 (330)
T ss_pred EEEEE
Confidence 44444
No 73
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=96.70 E-value=0.36 Score=41.97 Aligned_cols=222 Identities=17% Similarity=0.042 Sum_probs=105.6
Q ss_pred CcEEEEEecCCCCeEEEEeCCCCCEEeCCCCCccccccceeEEEEE-C-CEEEEEcCCCCCCCCCCCCCCCCcCcCceEE
Q 019186 55 ENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVST-A-GKLFVLGGGSDAVDPLTGDQDGSFATNEVWS 132 (345)
Q Consensus 55 ~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~ 132 (345)
+..+|+.++ ....+..||..+++....-+.... . ..++.. + +.+|+.++. ...+.+
T Consensus 42 g~~l~~~~~-~~~~v~~~d~~~~~~~~~~~~~~~----~-~~~~~~~~g~~l~~~~~~----------------~~~l~~ 99 (300)
T TIGR03866 42 GKLLYVCAS-DSDTIQVIDLATGEVIGTLPSGPD----P-ELFALHPNGKILYIANED----------------DNLVTV 99 (300)
T ss_pred CCEEEEEEC-CCCeEEEEECCCCcEEEeccCCCC----c-cEEEECCCCCEEEEEcCC----------------CCeEEE
Confidence 455666654 346788999988765432111111 1 122232 3 346666542 246888
Q ss_pred EeCCCCCcccCCCCCCCceeeeeeE-eCCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeEEEECCE-
Q 019186 133 YDPVTRQWSPRASMLVPRAMFACCA-LKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGK- 210 (345)
Q Consensus 133 yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~- 210 (345)
||+.+.+- +..++......+++. -++.+++++... ...+..||..+.+-...... .. ........-+++
T Consensus 100 ~d~~~~~~--~~~~~~~~~~~~~~~~~dg~~l~~~~~~-----~~~~~~~d~~~~~~~~~~~~-~~-~~~~~~~s~dg~~ 170 (300)
T TIGR03866 100 IDIETRKV--LAEIPVGVEPEGMAVSPDGKIVVNTSET-----TNMAHFIDTKTYEIVDNVLV-DQ-RPRFAEFTADGKE 170 (300)
T ss_pred EECCCCeE--EeEeeCCCCcceEEECCCCCEEEEEecC-----CCeEEEEeCCCCeEEEEEEc-CC-CccEEEECCCCCE
Confidence 99977542 111111111122332 256666665432 12356678776543211111 11 112222333555
Q ss_pred EEEEecCcceEEEEECCCCCeee-cc----CC---CC-CCceEE-EcCe-EEEEeC--cEEEEecCCceEEeccchhhcc
Q 019186 211 VHVLHKGLSTVQVLDHMGLGWTV-ED----YG---WL-QGPMAI-VHDS-VYLMSH--GLIIKQHRDVRKVVASASEFRR 277 (345)
Q Consensus 211 iyv~gG~~~~i~~yd~~~~~W~~-~~----~~---~~-~~~~~~-~~~~-l~~~~~--~~i~~~d~~~W~~~~~~p~~~~ 277 (345)
+++.+.....+..||..+.+... +. .. .. ...++. .+++ +|+..+ ..+..+|.++++.+.... ..
T Consensus 171 l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~ 248 (300)
T TIGR03866 171 LWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL--VG 248 (300)
T ss_pred EEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE--eC
Confidence 44443345678899998765321 11 00 00 112222 3444 455433 678889988776654432 11
Q ss_pred cceeEEEE-ECCeEEEEcceecCCCCcccccccCceeeeccCCC
Q 019186 278 RIGFAMIG-MGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE 320 (345)
Q Consensus 278 r~~~~~~~-~~~~l~i~GG~~~~~~~~~~~~~~~~v~~yd~~~~ 320 (345)
+....+.. -+++.++++...+ .++.+||+.+.
T Consensus 249 ~~~~~~~~~~~g~~l~~~~~~~-----------~~i~v~d~~~~ 281 (300)
T TIGR03866 249 QRVWQLAFTPDEKYLLTTNGVS-----------NDVSVIDVAAL 281 (300)
T ss_pred CCcceEEECCCCCEEEEEcCCC-----------CeEEEEECCCC
Confidence 12222332 2454444432121 26889999876
No 74
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.50 E-value=0.074 Score=46.19 Aligned_cols=110 Identities=19% Similarity=0.199 Sum_probs=69.2
Q ss_pred CCCeEEEEeCCCCCEEeCCCCCccccccceeEEEEE-CCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccC
Q 019186 65 PENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVST-AGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPR 143 (345)
Q Consensus 65 ~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~ 143 (345)
++..++.||..+.+|..+..-... .-.++... +++||+.|....... ....+..||..+++|..+
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~i~G----~V~~l~~~~~~~Llv~G~ft~~~~----------~~~~la~yd~~~~~w~~~ 79 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNGISG----TVTDLQWASNNQLLVGGNFTLNGT----------NSSNLATYDFKNQTWSSL 79 (281)
T ss_pred CCCEEEEEECCCCEeecCCCCceE----EEEEEEEecCCEEEEEEeeEECCC----------CceeEEEEecCCCeeeec
Confidence 477899999999999987654221 12234433 678888886533221 256688999999999877
Q ss_pred CC-----CCCCceeeeeeEeC-CeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCC
Q 019186 144 AS-----MLVPRAMFACCALK-EKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPD 193 (345)
Q Consensus 144 ~~-----~~~~r~~~~~~~~~-~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~ 193 (345)
+. +|.+.........+ +.+++.|.... ...-+..|| ..+|..+..
T Consensus 80 ~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~---g~~~l~~~d--Gs~W~~i~~ 130 (281)
T PF12768_consen 80 GGGSSNSIPGPVTALTFISNDGSNFWVAGRSAN---GSTFLMKYD--GSSWSSIGS 130 (281)
T ss_pred CCcccccCCCcEEEEEeeccCCceEEEeceecC---CCceEEEEc--CCceEeccc
Confidence 65 34444333333334 45666666532 234566674 568988865
No 75
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.31 E-value=0.64 Score=42.42 Aligned_cols=219 Identities=13% Similarity=0.117 Sum_probs=112.6
Q ss_pred CCeEEEEeCCCCCEEe-CCCCCccccccceeEEE-EECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCc-cc
Q 019186 66 ENLWQLYDPLRDLWIT-LPVLPSKIRHLAHFGVV-STAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQW-SP 142 (345)
Q Consensus 66 ~~~~~~yd~~~~~W~~-~~~~~~~~~~~~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W-~~ 142 (345)
...+.+|+..+.+=.+ ++... ..-.++. -.+|+|+.+|+. +-.+.+||..++.- +.
T Consensus 47 S~rvqly~~~~~~~~k~~srFk-----~~v~s~~fR~DG~LlaaGD~----------------sG~V~vfD~k~r~iLR~ 105 (487)
T KOG0310|consen 47 SVRVQLYSSVTRSVRKTFSRFK-----DVVYSVDFRSDGRLLAAGDE----------------SGHVKVFDMKSRVILRQ 105 (487)
T ss_pred ccEEEEEecchhhhhhhHHhhc-----cceeEEEeecCCeEEEccCC----------------cCcEEEeccccHHHHHH
Confidence 4567788887764222 11111 1122222 248999999985 34688999655321 11
Q ss_pred CCCCCCCceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCC--ceeEEEECCEEEEEecCcce
Q 019186 143 RASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNS--ACTGVVIGGKVHVLHKGLST 220 (345)
Q Consensus 143 ~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~--~~~~~~~~~~iyv~gG~~~~ 220 (345)
+.....+...-..+..++.+++.|+-+. .+..+|..+.. . ...+....-+ ..+....++.|.+.||.-..
T Consensus 106 ~~ah~apv~~~~f~~~d~t~l~s~sDd~------v~k~~d~s~a~-v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~ 177 (487)
T KOG0310|consen 106 LYAHQAPVHVTKFSPQDNTMLVSGSDDK------VVKYWDLSTAY-V-QAELSGHTDYVRCGDISPANDHIVVTGSYDGK 177 (487)
T ss_pred HhhccCceeEEEecccCCeEEEecCCCc------eEEEEEcCCcE-E-EEEecCCcceeEeeccccCCCeEEEecCCCce
Confidence 2222222222233445788888876432 24455554443 1 1122211011 22333557889999998888
Q ss_pred EEEEECCCC-Ceeec-cCCCC-CCceEEEc-CeEEEEeCcEEEEecCCc-eEEeccchhhcccceeEEEEE-CCeEEEEc
Q 019186 221 VQVLDHMGL-GWTVE-DYGWL-QGPMAIVH-DSVYLMSHGLIIKQHRDV-RKVVASASEFRRRIGFAMIGM-GDDIYVIG 294 (345)
Q Consensus 221 i~~yd~~~~-~W~~~-~~~~~-~~~~~~~~-~~l~~~~~~~i~~~d~~~-W~~~~~~p~~~~r~~~~~~~~-~~~l~i~G 294 (345)
+-.||.++. .|... ...-+ -..++..+ +.|...||+.+...|..+ -+.+..+.. ....--++... ++.-++.|
T Consensus 178 vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~-H~KtVTcL~l~s~~~rLlS~ 256 (487)
T KOG0310|consen 178 VRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFN-HNKTVTCLRLASDSTRLLSG 256 (487)
T ss_pred EEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhc-ccceEEEEEeecCCceEeec
Confidence 999999877 55432 11111 12222234 344555667888877765 444433321 11111111111 45777777
Q ss_pred ceecCCCCcccccccCceeeeccCCCCCceeEcCCC
Q 019186 295 GVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPM 330 (345)
Q Consensus 295 G~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~v~~~ 330 (345)
|.+. .|-+||.. .|+.+-.+
T Consensus 257 sLD~------------~VKVfd~t----~~Kvv~s~ 276 (487)
T KOG0310|consen 257 SLDR------------HVKVFDTT----NYKVVHSW 276 (487)
T ss_pred cccc------------ceEEEEcc----ceEEEEee
Confidence 7665 47788833 46666543
No 76
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=96.15 E-value=0.75 Score=44.00 Aligned_cols=277 Identities=13% Similarity=0.095 Sum_probs=139.7
Q ss_pred cCCCCChHHHHHHhhccCCCcchhhHHHhhHHHHHhhcChhhHHHH--HhcCC----CCcEEEEEec---CCCCeEEE-E
Q 019186 3 ELIEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELFKAR--QEVGS----SENLLCVCAF---DPENLWQL-Y 72 (345)
Q Consensus 3 ~~~~~lp~~~~~~~l~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~--~~~~~----~~~~l~v~gg---~~~~~~~~-y 72 (345)
.++..||.|+...|+..++.+.+.....+|+.|+.+..+....... ..... .+..+-...+ .....++. .
T Consensus 106 dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ks~~~~~ 185 (537)
T KOG0274|consen 106 DFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIGRLPPKCEKGLPLKSGFKGRPWKSFYRRR 185 (537)
T ss_pred chhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcccCCcccCcccccccccccchhhhhhhhh
Confidence 5677899999999999999999999999999999887765433221 11111 1111111111 01111111 2
Q ss_pred eCCCCCEEeCCCCCccccccceeEEEE----ECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccCCCCCC
Q 019186 73 DPLRDLWITLPVLPSKIRHLAHFGVVS----TAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPRASMLV 148 (345)
Q Consensus 73 d~~~~~W~~~~~~~~~~~~~~~~~~~~----~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~ 148 (345)
....+.|+......... .+.++.-.+ +.+..++.| . ....+.+||..+..-...+....
T Consensus 186 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~q~~~~~~~~~-s---------------~~~tl~~~~~~~~~~i~~~l~GH 248 (537)
T KOG0274|consen 186 FRLSKNWRKLFRRGYKV-LLGTDDHVVLCLQLHDGFFKSG-S---------------DDSTLHLWDLNNGYLILTRLVGH 248 (537)
T ss_pred hhcccccccccccccee-ecccCcchhhhheeecCeEEec-C---------------CCceeEEeecccceEEEeeccCC
Confidence 22333455443322110 011111111 111112222 1 23455678887765333311111
Q ss_pred CceeeeeeEe-CCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeE-EEECCEEEEEecCcceEEEEEC
Q 019186 149 PRAMFACCAL-KEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTG-VVIGGKVHVLHKGLSTVQVLDH 226 (345)
Q Consensus 149 ~r~~~~~~~~-~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~-~~~~~~iyv~gG~~~~i~~yd~ 226 (345)
.-.-.++... ++.+++.|..+ ..+-++|..++.-..+-. . ...... ....+...+.|+.-+++.+++.
T Consensus 249 ~g~V~~l~~~~~~~~lvsgS~D------~t~rvWd~~sg~C~~~l~--g--h~stv~~~~~~~~~~~sgs~D~tVkVW~v 318 (537)
T KOG0274|consen 249 FGGVWGLAFPSGGDKLVSGSTD------KTERVWDCSTGECTHSLQ--G--HTSSVRCLTIDPFLLVSGSRDNTVKVWDV 318 (537)
T ss_pred CCCceeEEEecCCCEEEEEecC------CcEEeEecCCCcEEEEec--C--CCceEEEEEccCceEeeccCCceEEEEec
Confidence 1111222222 35666666544 236777777776554311 1 122222 2334444444447788999999
Q ss_pred CCCCeeeccCCCC-CCceEEEcCeEEEEeC--cEEEEecCCceEEeccchhhcccceeEEEEECC-eEEEEcceecCCCC
Q 019186 227 MGLGWTVEDYGWL-QGPMAIVHDSVYLMSH--GLIIKQHRDVRKVVASASEFRRRIGFAMIGMGD-DIYVIGGVIGPDRW 302 (345)
Q Consensus 227 ~~~~W~~~~~~~~-~~~~~~~~~~l~~~~~--~~i~~~d~~~W~~~~~~p~~~~r~~~~~~~~~~-~l~i~GG~~~~~~~ 302 (345)
.+++-..+-.... .-..+..++.+.+.|. ..|..+|..+-+-+..+.....|. .+ ..+++ ..++-|..+.
T Consensus 319 ~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V-~s-l~~~~~~~~~Sgs~D~---- 392 (537)
T KOG0274|consen 319 TNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRV-YS-LIVDSENRLLSGSLDT---- 392 (537)
T ss_pred cCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCCcceE-EE-EEecCcceEEeeeecc----
Confidence 8887765543211 2333445666666665 678888887755555554211221 11 24455 6666666552
Q ss_pred cccccccCceeeeccCCC
Q 019186 303 NWDIKPMSDVDVLTVGAE 320 (345)
Q Consensus 303 ~~~~~~~~~v~~yd~~~~ 320 (345)
.|.+||+.+.
T Consensus 393 --------~IkvWdl~~~ 402 (537)
T KOG0274|consen 393 --------TIKVWDLRTK 402 (537)
T ss_pred --------ceEeecCCch
Confidence 4677888775
No 77
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=96.08 E-value=0.7 Score=41.72 Aligned_cols=238 Identities=13% Similarity=0.039 Sum_probs=116.1
Q ss_pred CCcEEEEEecC--CCCeEEEEeCCC--CCEEeCCCCCccccccceeEEEE--ECCEEEEEcCCCCCCCCCCCCCCCCcCc
Q 019186 54 SENLLCVCAFD--PENLWQLYDPLR--DLWITLPVLPSKIRHLAHFGVVS--TAGKLFVLGGGSDAVDPLTGDQDGSFAT 127 (345)
Q Consensus 54 ~~~~l~v~gg~--~~~~~~~yd~~~--~~W~~~~~~~~~~~~~~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~~~ 127 (345)
.+..||+.... ....+..|.... ++.+.+...+.. ....+| ++. .+..||+.- + ..
T Consensus 47 ~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~-g~~p~~-i~~~~~g~~l~van-y---------------~~ 108 (345)
T PF10282_consen 47 DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSG-GSSPCH-IAVDPDGRFLYVAN-Y---------------GG 108 (345)
T ss_dssp TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEES-SSCEEE-EEECTTSSEEEEEE-T---------------TT
T ss_pred CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccC-CCCcEE-EEEecCCCEEEEEE-c---------------cC
Confidence 47889988764 466777776654 577776555422 112222 233 234466652 2 12
Q ss_pred CceEEEeCCCC-CcccC----------CC--CCCCceeeeeeEe-C-CeEEEEcCcCCCCCCCceEEEEeCCCCc--eEe
Q 019186 128 NEVWSYDPVTR-QWSPR----------AS--MLVPRAMFACCAL-K-EKIVVAGGFTSCRKSISQAEMYDPEKDV--WVP 190 (345)
Q Consensus 128 ~~~~~yd~~t~-~W~~~----------~~--~~~~r~~~~~~~~-~-~~iyv~gG~~~~~~~~~~v~~yd~~~~~--W~~ 190 (345)
..+.+|++..+ +-... +. -.....-|.+... + ..+|+.. . ..+.+.+|+...+. ...
T Consensus 109 g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~d-l-----G~D~v~~~~~~~~~~~l~~ 182 (345)
T PF10282_consen 109 GSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPD-L-----GADRVYVYDIDDDTGKLTP 182 (345)
T ss_dssp TEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEE-T-----TTTEEEEEEE-TTS-TEEE
T ss_pred CeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEe-c-----CCCEEEEEEEeCCCceEEE
Confidence 35666766553 11111 01 1111223444444 3 4566652 1 14568888887665 544
Q ss_pred CCCCCccCCCceeEEEE---CCEEEEEecCcceEEEEECC--CCCeeec---cCCCC-------CCceEEE-cC-eEEEE
Q 019186 191 IPDLHRTHNSACTGVVI---GGKVHVLHKGLSTVQVLDHM--GLGWTVE---DYGWL-------QGPMAIV-HD-SVYLM 253 (345)
Q Consensus 191 ~~~~~~~~~~~~~~~~~---~~~iyv~gG~~~~i~~yd~~--~~~W~~~---~~~~~-------~~~~~~~-~~-~l~~~ 253 (345)
......+...+...+++ +..+|++....+.+..|+.. ++.++.+ ...+. .+.++.. +| .||+.
T Consensus 183 ~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvs 262 (345)
T PF10282_consen 183 VDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVS 262 (345)
T ss_dssp EEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEE
T ss_pred eeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEE
Confidence 32221111222333332 35799998777778877766 5555543 22211 1122222 34 57777
Q ss_pred eC--cEEEEecC--Cc--eEEeccchhhcccceeEEE-EECCeEEEEcceecCCCCcccccccCceeee--ccCCCCCce
Q 019186 254 SH--GLIIKQHR--DV--RKVVASASEFRRRIGFAMI-GMGDDIYVIGGVIGPDRWNWDIKPMSDVDVL--TVGAERPTW 324 (345)
Q Consensus 254 ~~--~~i~~~d~--~~--W~~~~~~p~~~~r~~~~~~-~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~y--d~~~~~~~W 324 (345)
.. +.|..|+. ++ -+.+...+.. ......++ .-+++.++++...+. .|.+| |.+++ .+
T Consensus 263 nr~~~sI~vf~~d~~~g~l~~~~~~~~~-G~~Pr~~~~s~~g~~l~Va~~~s~-----------~v~vf~~d~~tG--~l 328 (345)
T PF10282_consen 263 NRGSNSISVFDLDPATGTLTLVQTVPTG-GKFPRHFAFSPDGRYLYVANQDSN-----------TVSVFDIDPDTG--KL 328 (345)
T ss_dssp ECTTTEEEEEEECTTTTTEEEEEEEEES-SSSEEEEEE-TTSSEEEEEETTTT-----------EEEEEEEETTTT--EE
T ss_pred eccCCEEEEEEEecCCCceEEEEEEeCC-CCCccEEEEeCCCCEEEEEecCCC-----------eEEEEEEeCCCC--cE
Confidence 65 67777765 32 5555544421 11111222 235555555553332 56666 55676 77
Q ss_pred eEcCC
Q 019186 325 RQVSP 329 (345)
Q Consensus 325 ~~v~~ 329 (345)
..+..
T Consensus 329 ~~~~~ 333 (345)
T PF10282_consen 329 TPVGS 333 (345)
T ss_dssp EEEEE
T ss_pred EEecc
Confidence 77653
No 78
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=96.04 E-value=0.78 Score=38.78 Aligned_cols=202 Identities=10% Similarity=0.008 Sum_probs=90.8
Q ss_pred CCeEEEEeCCCCCEEeCCCCCccccccceeEEEEE-CCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccCC
Q 019186 66 ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVST-AGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPRA 144 (345)
Q Consensus 66 ~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~ 144 (345)
...+.+||..+++... .+... ...-.++... ++.+++.++. ...+.+||..+.+-...-
T Consensus 72 ~~~i~i~~~~~~~~~~--~~~~~--~~~i~~~~~~~~~~~~~~~~~----------------~~~i~~~~~~~~~~~~~~ 131 (289)
T cd00200 72 DKTIRLWDLETGECVR--TLTGH--TSYVSSVAFSPDGRILSSSSR----------------DKTIKVWDVETGKCLTTL 131 (289)
T ss_pred CCeEEEEEcCcccceE--EEecc--CCcEEEEEEcCCCCEEEEecC----------------CCeEEEEECCCcEEEEEe
Confidence 4678889887753211 11111 0112233333 3456666652 246888998754422111
Q ss_pred CCCCCceeeeeeEeC-CeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeEEE-ECCEEEEEecCcceEE
Q 019186 145 SMLVPRAMFACCALK-EKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVV-IGGKVHVLHKGLSTVQ 222 (345)
Q Consensus 145 ~~~~~r~~~~~~~~~-~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~~iyv~gG~~~~i~ 222 (345)
. .....-.++.... +.+++.+..+ ..+.+||..+.+-. ..+......-.+... -++..+++++....+.
T Consensus 132 ~-~~~~~i~~~~~~~~~~~l~~~~~~------~~i~i~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 202 (289)
T cd00200 132 R-GHTDWVNSVAFSPDGTFVASSSQD------GTIKLWDLRTGKCV--ATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIK 202 (289)
T ss_pred c-cCCCcEEEEEEcCcCCEEEEEcCC------CcEEEEEccccccc--eeEecCccccceEEECCCcCEEEEecCCCcEE
Confidence 1 1111122233333 4444444322 34888998754321 111111011112222 2343455555577889
Q ss_pred EEECCCCCeeecc-CCCC-CCceEEE-cCeEEEEeC--cEEEEecCCceEEeccchhhcccceeEEEEE-CCeEEEEcce
Q 019186 223 VLDHMGLGWTVED-YGWL-QGPMAIV-HDSVYLMSH--GLIIKQHRDVRKVVASASEFRRRIGFAMIGM-GDDIYVIGGV 296 (345)
Q Consensus 223 ~yd~~~~~W~~~~-~~~~-~~~~~~~-~~~l~~~~~--~~i~~~d~~~W~~~~~~p~~~~r~~~~~~~~-~~~l~i~GG~ 296 (345)
.||..+.+-...- .... ...+... ++.+++.+. +.+..||..+.+.+..++...... ..+... ++..++.++.
T Consensus 203 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~ 281 (289)
T cd00200 203 LWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSV-TSLAWSPDGKRLASGSA 281 (289)
T ss_pred EEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcE-EEEEECCCCCEEEEecC
Confidence 9998765433221 1111 1122222 345555553 788888887644444333111111 223322 3467776664
Q ss_pred e
Q 019186 297 I 297 (345)
Q Consensus 297 ~ 297 (345)
+
T Consensus 282 d 282 (289)
T cd00200 282 D 282 (289)
T ss_pred C
Confidence 4
No 79
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.92 E-value=0.76 Score=41.97 Aligned_cols=213 Identities=16% Similarity=0.090 Sum_probs=106.3
Q ss_pred CcEEEEEecCCCCeEEEEeCCCCCEEeCCCCCccccccceeE-EEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEE
Q 019186 55 ENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFG-VVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSY 133 (345)
Q Consensus 55 ~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~-~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~y 133 (345)
++.|++.|. ....+.+||.++.. .+-.+... ....+.. -...++.++++|+.+ ..+..+
T Consensus 79 DG~LlaaGD-~sG~V~vfD~k~r~--iLR~~~ah-~apv~~~~f~~~d~t~l~s~sDd----------------~v~k~~ 138 (487)
T KOG0310|consen 79 DGRLLAAGD-ESGHVKVFDMKSRV--ILRQLYAH-QAPVHVTKFSPQDNTMLVSGSDD----------------KVVKYW 138 (487)
T ss_pred CCeEEEccC-CcCcEEEeccccHH--HHHHHhhc-cCceeEEEecccCCeEEEecCCC----------------ceEEEE
Confidence 677777774 44678899954421 11111111 0011111 223578899998752 234455
Q ss_pred eCCCCCcccCCCCCCCcee---eeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCC-ceEeCCCCCccCCCceeEEEECC
Q 019186 134 DPVTRQWSPRASMLVPRAM---FACCALKEKIVVAGGFTSCRKSISQAEMYDPEKD-VWVPIPDLHRTHNSACTGVVIGG 209 (345)
Q Consensus 134 d~~t~~W~~~~~~~~~r~~---~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~-~W~~~~~~~~~~~~~~~~~~~~~ 209 (345)
|..+.. . ...+...-.+ ..+.-.++.|++-||+++. +-.||..+. .|. -.+........-++.-+|
T Consensus 139 d~s~a~-v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~------vrl~DtR~~~~~v--~elnhg~pVe~vl~lpsg 208 (487)
T KOG0310|consen 139 DLSTAY-V-QAELSGHTDYVRCGDISPANDHIVVTGSYDGK------VRLWDTRSLTSRV--VELNHGCPVESVLALPSG 208 (487)
T ss_pred EcCCcE-E-EEEecCCcceeEeeccccCCCeEEEecCCCce------EEEEEeccCCcee--EEecCCCceeeEEEcCCC
Confidence 665544 2 1122222211 1222347789999999854 889998877 443 233322111112222243
Q ss_pred EEEEEecCcceEEEEECCCCCeeeccCCCCC---CceEEE-c-CeEEEEeC-cEEEEecCCceEEeccchhhcccceeEE
Q 019186 210 KVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQ---GPMAIV-H-DSVYLMSH-GLIIKQHRDVRKVVASASEFRRRIGFAM 283 (345)
Q Consensus 210 ~iyv~gG~~~~i~~yd~~~~~W~~~~~~~~~---~~~~~~-~-~~l~~~~~-~~i~~~d~~~W~~~~~~p~~~~r~~~~~ 283 (345)
.+++..| .+.+-.+|+.++.=....-.... ..++.. + .+|+.-+- +.+..||..+|+.+-.+.-+.+-...++
T Consensus 209 s~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiav 287 (487)
T KOG0310|consen 209 SLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAV 287 (487)
T ss_pred CEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEe
Confidence 5555432 35666777764421111100011 112222 2 34443333 8999999877888877653334333333
Q ss_pred EEECCeEEEEcceecC
Q 019186 284 IGMGDDIYVIGGVIGP 299 (345)
Q Consensus 284 ~~~~~~l~i~GG~~~~ 299 (345)
. -|+.-.++|+.++.
T Consensus 288 s-~dd~t~viGmsnGl 302 (487)
T KOG0310|consen 288 S-PDDQTVVIGMSNGL 302 (487)
T ss_pred c-CCCceEEEecccce
Confidence 2 36777788876653
No 80
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=95.77 E-value=1 Score=38.04 Aligned_cols=219 Identities=10% Similarity=0.002 Sum_probs=99.9
Q ss_pred EEEEEecCCCCeEEEEeCCCCCEEeCCCCCccccccceeEEEEE-CCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeC
Q 019186 57 LLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVST-AGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDP 135 (345)
Q Consensus 57 ~l~v~gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~ 135 (345)
.+++.++. ...+.+||..+++-........ .....+... ++..++.++. ...+.+||.
T Consensus 22 ~~l~~~~~-~g~i~i~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~----------------~~~i~i~~~ 80 (289)
T cd00200 22 KLLATGSG-DGTIKVWDLETGELLRTLKGHT----GPVRDVAASADGTYLASGSS----------------DKTIRLWDL 80 (289)
T ss_pred CEEEEeec-CcEEEEEEeeCCCcEEEEecCC----cceeEEEECCCCCEEEEEcC----------------CCeEEEEEc
Confidence 34444432 4578888887664211111111 111123333 3445666654 246888988
Q ss_pred CCCCcccCCCCCCCc-eeeeeeEe-CCeEEEEcCcCCCCCCCceEEEEeCCCCceE-eCCCCCccCCCceeEEEEC-CEE
Q 019186 136 VTRQWSPRASMLVPR-AMFACCAL-KEKIVVAGGFTSCRKSISQAEMYDPEKDVWV-PIPDLHRTHNSACTGVVIG-GKV 211 (345)
Q Consensus 136 ~t~~W~~~~~~~~~r-~~~~~~~~-~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~~~~~~~~~~~~-~~i 211 (345)
.+++-.. .+.... .-.++... ++.+++.++.+ ..+.+||..+.+-. .+... . ..-.+..... +.+
T Consensus 81 ~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~~~~~~~--~-~~i~~~~~~~~~~~ 149 (289)
T cd00200 81 ETGECVR--TLTGHTSYVSSVAFSPDGRILSSSSRD------KTIKVWDVETGKCLTTLRGH--T-DWVNSVAFSPDGTF 149 (289)
T ss_pred CcccceE--EEeccCCcEEEEEEcCCCCEEEEecCC------CeEEEEECCCcEEEEEeccC--C-CcEEEEEEcCcCCE
Confidence 7653211 111111 11222332 34566665533 34889998855432 22211 1 1112222232 455
Q ss_pred EEEecCcceEEEEECCCCCe-eeccCCC-CCCceEE-EcC-eEEEEeC-cEEEEecCCceEEeccchhhcccceeEEEEE
Q 019186 212 HVLHKGLSTVQVLDHMGLGW-TVEDYGW-LQGPMAI-VHD-SVYLMSH-GLIIKQHRDVRKVVASASEFRRRIGFAMIGM 286 (345)
Q Consensus 212 yv~gG~~~~i~~yd~~~~~W-~~~~~~~-~~~~~~~-~~~-~l~~~~~-~~i~~~d~~~W~~~~~~p~~~~r~~~~~~~~ 286 (345)
++.+.....+..||..+.+- ....... ....+.. .++ .+++.+. +.+..||....+.+..+.. ....-..+...
T Consensus 150 l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~ 228 (289)
T cd00200 150 VASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRG-HENGVNSVAFS 228 (289)
T ss_pred EEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhh-cCCceEEEEEc
Confidence 55553467788999875432 2222111 1122222 233 4444443 7888888876555444421 11122233333
Q ss_pred C-CeEEEEcceecCCCCcccccccCceeeeccCCC
Q 019186 287 G-DDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE 320 (345)
Q Consensus 287 ~-~~l~i~GG~~~~~~~~~~~~~~~~v~~yd~~~~ 320 (345)
. +.+++.++.+ ..+.+||..+.
T Consensus 229 ~~~~~~~~~~~~------------~~i~i~~~~~~ 251 (289)
T cd00200 229 PDGYLLASGSED------------GTIRVWDLRTG 251 (289)
T ss_pred CCCcEEEEEcCC------------CcEEEEEcCCc
Confidence 3 4455554412 25778887654
No 81
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.77 E-value=1.9 Score=41.04 Aligned_cols=113 Identities=10% Similarity=0.089 Sum_probs=64.2
Q ss_pred EEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCC--cccCCCCCC----Cc-eeeeeeEeC-CeEEEEcCc
Q 019186 97 VVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQ--WSPRASMLV----PR-AMFACCALK-EKIVVAGGF 168 (345)
Q Consensus 97 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~----~r-~~~~~~~~~-~~iyv~gG~ 168 (345)
-++.+++||+.... ..++.+|..+++ |+.-..... .. .....++.+ +++|+...
T Consensus 57 Pvv~~g~vy~~~~~-----------------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~- 118 (488)
T cd00216 57 PLVVDGDMYFTTSH-----------------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF- 118 (488)
T ss_pred CEEECCEEEEeCCC-----------------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC-
Confidence 45678999987542 358888988765 875332210 00 112234456 78877542
Q ss_pred CCCCCCCceEEEEeCCCCc--eEeCCCCCc-c-CCCceeEEEECCEEEEEe--------cCcceEEEEECCCC--Ceee
Q 019186 169 TSCRKSISQAEMYDPEKDV--WVPIPDLHR-T-HNSACTGVVIGGKVHVLH--------KGLSTVQVLDHMGL--GWTV 233 (345)
Q Consensus 169 ~~~~~~~~~v~~yd~~~~~--W~~~~~~~~-~-~~~~~~~~~~~~~iyv~g--------G~~~~i~~yd~~~~--~W~~ 233 (345)
...+..+|.++.+ |+.-..... . .....+.++.++.+|+-. +....++++|..++ .|+.
T Consensus 119 ------~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~ 191 (488)
T cd00216 119 ------DGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRF 191 (488)
T ss_pred ------CCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEe
Confidence 2358899988764 875432221 0 001223345667766542 12467899999876 5865
No 82
>PRK13684 Ycf48-like protein; Provisional
Probab=95.76 E-value=1.4 Score=39.56 Aligned_cols=155 Identities=10% Similarity=0.096 Sum_probs=79.4
Q ss_pred ceEEEeCCCCCcccCCCCCCCceeeeeeEeCCeEEEEcCcCCCCCCCceEEE-EeCCCCceEeCCCCCccCCCceeE-EE
Q 019186 129 EVWSYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEM-YDPEKDVWVPIPDLHRTHNSACTG-VV 206 (345)
Q Consensus 129 ~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~-yd~~~~~W~~~~~~~~~~~~~~~~-~~ 206 (345)
.+++=+-.-++|+.+.... .-.-+.+....+..+++.|..+. +.. .|....+|+.+...... .-.++ ..
T Consensus 153 ~i~~S~DgG~tW~~~~~~~-~g~~~~i~~~~~g~~v~~g~~G~------i~~s~~~gg~tW~~~~~~~~~--~l~~i~~~ 223 (334)
T PRK13684 153 AIYRTTDGGKNWEALVEDA-AGVVRNLRRSPDGKYVAVSSRGN------FYSTWEPGQTAWTPHQRNSSR--RLQSMGFQ 223 (334)
T ss_pred eEEEECCCCCCceeCcCCC-cceEEEEEECCCCeEEEEeCCce------EEEEcCCCCCeEEEeeCCCcc--cceeeeEc
Confidence 4666666678899876533 22334444444444444333221 222 34455679987543222 22233 33
Q ss_pred ECCEEEEEecCcceEEEEE-CC-CCCeeeccCCCC-----CCceEE-EcCeEEEEeC-c-EEEEecCCc-eEEeccchhh
Q 019186 207 IGGKVHVLHKGLSTVQVLD-HM-GLGWTVEDYGWL-----QGPMAI-VHDSVYLMSH-G-LIIKQHRDV-RKVVASASEF 275 (345)
Q Consensus 207 ~~~~iyv~gG~~~~i~~yd-~~-~~~W~~~~~~~~-----~~~~~~-~~~~l~~~~~-~-~i~~~d~~~-W~~~~~~p~~ 275 (345)
-++.++++|. .. ...+. .. -..|+.+..... ...++. .++.+++.+. + .+...|... |+.+.....
T Consensus 224 ~~g~~~~vg~-~G-~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~S~d~G~tW~~~~~~~~- 300 (334)
T PRK13684 224 PDGNLWMLAR-GG-QIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLLVSKDGGKTWEKDPVGEE- 300 (334)
T ss_pred CCCCEEEEec-CC-EEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcCCCeEEEeCCCCCCCeECCcCCC-
Confidence 4678888873 23 33442 22 348997543211 122222 2668888877 3 344445433 999854221
Q ss_pred cccceeEEEEE-CCeEEEEcc
Q 019186 276 RRRIGFAMIGM-GDDIYVIGG 295 (345)
Q Consensus 276 ~~r~~~~~~~~-~~~l~i~GG 295 (345)
.+...+.++.. ++++|++|.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~G~ 321 (334)
T PRK13684 301 VPSNFYKIVFLDPEKGFVLGQ 321 (334)
T ss_pred CCcceEEEEEeCCCceEEECC
Confidence 12233444444 677888765
No 83
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.70 E-value=0.21 Score=45.19 Aligned_cols=154 Identities=10% Similarity=0.103 Sum_probs=90.3
Q ss_pred hHHHHHhcCCCCcEEEEEecCCCCeEEEEeCCCCCEEeCCCCCcccc-ccceeEEEEECCEEEEEcCCCCCCCCCCCCCC
Q 019186 44 LFKARQEVGSSENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIR-HLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQD 122 (345)
Q Consensus 44 ~~~~~~~~~~~~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~ 122 (345)
+|...++....+....+.+| ...-++.||..+.+-.++.++..... ....+. ++.++.++++-|.
T Consensus 258 fPi~~a~f~p~G~~~i~~s~-rrky~ysyDle~ak~~k~~~~~g~e~~~~e~Fe-VShd~~fia~~G~------------ 323 (514)
T KOG2055|consen 258 FPIQKAEFAPNGHSVIFTSG-RRKYLYSYDLETAKVTKLKPPYGVEEKSMERFE-VSHDSNFIAIAGN------------ 323 (514)
T ss_pred CccceeeecCCCceEEEecc-cceEEEEeeccccccccccCCCCcccchhheeE-ecCCCCeEEEccc------------
Confidence 33333444444553433333 34567899999999888877654311 122333 3455556666664
Q ss_pred CCcCcCceEEEeCCCCCcccCCCCCCCceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCc----eEeCCCCCccC
Q 019186 123 GSFATNEVWSYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDV----WVPIPDLHRTH 198 (345)
Q Consensus 123 ~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~----W~~~~~~~~~~ 198 (345)
...+.++...|+.|..--.++......+...-+..|+++||.. .|+++|..++. |..-+.
T Consensus 324 ----~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~G-------eV~v~nl~~~~~~~rf~D~G~----- 387 (514)
T KOG2055|consen 324 ----NGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTG-------EVYVWNLRQNSCLHRFVDDGS----- 387 (514)
T ss_pred ----CceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCc-------eEEEEecCCcceEEEEeecCc-----
Confidence 2357788888888866555555445555554456677777743 49999999874 332211
Q ss_pred CCceeEE-EECCEEEEEecCcceEEEEECC
Q 019186 199 NSACTGV-VIGGKVHVLHKGLSTVQVLDHM 227 (345)
Q Consensus 199 ~~~~~~~-~~~~~iyv~gG~~~~i~~yd~~ 227 (345)
..+.+.+ ..++.++.+|.....+-+||..
T Consensus 388 v~gts~~~S~ng~ylA~GS~~GiVNIYd~~ 417 (514)
T KOG2055|consen 388 VHGTSLCISLNGSYLATGSDSGIVNIYDGN 417 (514)
T ss_pred cceeeeeecCCCceEEeccCcceEEEeccc
Confidence 2222222 4677766666566667788753
No 84
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=95.41 E-value=1.9 Score=38.57 Aligned_cols=180 Identities=11% Similarity=0.006 Sum_probs=85.9
Q ss_pred EEEEEecCCCCeEEEEeCCC-CCEEeCCCCCccccccceeEEEEE-CC-EEEEEcCCCCCCCCCCCCCCCCcCcCceEEE
Q 019186 57 LLCVCAFDPENLWQLYDPLR-DLWITLPVLPSKIRHLAHFGVVST-AG-KLFVLGGGSDAVDPLTGDQDGSFATNEVWSY 133 (345)
Q Consensus 57 ~l~v~gg~~~~~~~~yd~~~-~~W~~~~~~~~~~~~~~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~y 133 (345)
.+|+.... ...+..||..+ ++++.+...+.. .....++.. ++ .||+.+.. ...+..|
T Consensus 3 ~~y~~~~~-~~~I~~~~~~~~g~l~~~~~~~~~---~~~~~l~~spd~~~lyv~~~~----------------~~~i~~~ 62 (330)
T PRK11028 3 IVYIASPE-SQQIHVWNLNHEGALTLLQVVDVP---GQVQPMVISPDKRHLYVGVRP----------------EFRVLSY 62 (330)
T ss_pred EEEEEcCC-CCCEEEEEECCCCceeeeeEEecC---CCCccEEECCCCCEEEEEECC----------------CCcEEEE
Confidence 46666443 46788888854 566665544432 112223333 34 46775432 2356666
Q ss_pred eCC-CCCcccCCCCCCCceeeeeeEe-C-CeEEEEcCcCCCCCCCceEEEEeCCCCc--eEeCCCCCccCCCceeEEEE-
Q 019186 134 DPV-TRQWSPRASMLVPRAMFACCAL-K-EKIVVAGGFTSCRKSISQAEMYDPEKDV--WVPIPDLHRTHNSACTGVVI- 207 (345)
Q Consensus 134 d~~-t~~W~~~~~~~~~r~~~~~~~~-~-~~iyv~gG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~- 207 (345)
+.. +++++.+...+....-+.++.. + ..+|+..-. ...+.+||.+++. ...+...+.. ...+.++..
T Consensus 63 ~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~------~~~v~v~~~~~~g~~~~~~~~~~~~-~~~~~~~~~p 135 (330)
T PRK11028 63 RIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYN------ANCVSVSPLDKDGIPVAPIQIIEGL-EGCHSANIDP 135 (330)
T ss_pred EECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcC------CCeEEEEEECCCCCCCCceeeccCC-CcccEeEeCC
Confidence 664 4456544433322122223333 3 456665421 2457888876431 1122222221 112233222
Q ss_pred C-CEEEEEecCcceEEEEECCCC-Ceee-------ccCCCCCCceEEE-c-CeEEEEeC--cEEEEecC
Q 019186 208 G-GKVHVLHKGLSTVQVLDHMGL-GWTV-------EDYGWLQGPMAIV-H-DSVYLMSH--GLIIKQHR 263 (345)
Q Consensus 208 ~-~~iyv~gG~~~~i~~yd~~~~-~W~~-------~~~~~~~~~~~~~-~-~~l~~~~~--~~i~~~d~ 263 (345)
+ ..+|+..-..+.+..||..+. .... ++....+..++.. + ..+|+... +.+..|+.
T Consensus 136 ~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~ 204 (330)
T PRK11028 136 DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQL 204 (330)
T ss_pred CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEE
Confidence 3 467776655688999998763 2221 1111112223332 3 36777765 66666654
No 85
>PRK04792 tolB translocation protein TolB; Provisional
Probab=95.38 E-value=2.4 Score=39.77 Aligned_cols=146 Identities=10% Similarity=0.016 Sum_probs=79.1
Q ss_pred CCeEEEEeCCCCCEEeCCCCCccccccceeEEEEECCE-EEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccCC
Q 019186 66 ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGK-LFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPRA 144 (345)
Q Consensus 66 ~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~-lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~ 144 (345)
...++.+|+.+++-+.+...+.. ... ...+-+++ |++..... ...+++++|..+++.+++.
T Consensus 241 ~~~L~~~dl~tg~~~~lt~~~g~---~~~-~~wSPDG~~La~~~~~~--------------g~~~Iy~~dl~tg~~~~lt 302 (448)
T PRK04792 241 KAEIFVQDIYTQVREKVTSFPGI---NGA-PRFSPDGKKLALVLSKD--------------GQPEIYVVDIATKALTRIT 302 (448)
T ss_pred CcEEEEEECCCCCeEEecCCCCC---cCC-eeECCCCCEEEEEEeCC--------------CCeEEEEEECCCCCeEECc
Confidence 45789999988877766654432 111 12223444 55543321 1357999999998877765
Q ss_pred CCCCCceeeeeeEeCC-eEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeEEEECC-EEEEEec--Ccce
Q 019186 145 SMLVPRAMFACCALKE-KIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGG-KVHVLHK--GLST 220 (345)
Q Consensus 145 ~~~~~r~~~~~~~~~~-~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-~iyv~gG--~~~~ 220 (345)
........ ....-++ .|+......+ ...++.+|.++.+++.+.. ... ........-++ .|++... ....
T Consensus 303 ~~~~~~~~-p~wSpDG~~I~f~s~~~g----~~~Iy~~dl~~g~~~~Lt~-~g~-~~~~~~~SpDG~~l~~~~~~~g~~~ 375 (448)
T PRK04792 303 RHRAIDTE-PSWHPDGKSLIFTSERGG----KPQIYRVNLASGKVSRLTF-EGE-QNLGGSITPDGRSMIMVNRTNGKFN 375 (448)
T ss_pred cCCCCccc-eEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEEec-CCC-CCcCeeECCCCCEEEEEEecCCceE
Confidence 43211111 1112244 4444432221 3578999999888887642 111 11112233344 4555432 2346
Q ss_pred EEEEECCCCCeeeccC
Q 019186 221 VQVLDHMGLGWTVEDY 236 (345)
Q Consensus 221 i~~yd~~~~~W~~~~~ 236 (345)
++.+|+.+++.+.+..
T Consensus 376 I~~~dl~~g~~~~lt~ 391 (448)
T PRK04792 376 IARQDLETGAMQVLTS 391 (448)
T ss_pred EEEEECCCCCeEEccC
Confidence 8889998888776643
No 86
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.25 E-value=0.013 Score=50.38 Aligned_cols=38 Identities=16% Similarity=0.118 Sum_probs=34.7
Q ss_pred CCCChHHHHHHhhccCCCcchhhHHHhhHHHHHhhcCh
Q 019186 5 IEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSP 42 (345)
Q Consensus 5 ~~~lp~~~~~~~l~~~p~~~~~~~~~~~~~w~~~~~~~ 42 (345)
|.+||||+++.|++.++.+.+.....||++|..+..++
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de 135 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDE 135 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccc
Confidence 55899999999999999999999999999999886654
No 87
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=95.21 E-value=0.014 Score=50.28 Aligned_cols=46 Identities=33% Similarity=0.406 Sum_probs=40.2
Q ss_pred CCCChHHHHHHhhccCCC-----cchhhHHHhhHHHHHhhcChhhHHHHHh
Q 019186 5 IEGLPDAVALRCLARVPF-----FLHPKLELVSRSWRAAIRSPELFKARQE 50 (345)
Q Consensus 5 ~~~lp~~~~~~~l~~~p~-----~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 50 (345)
|.-||||+++.|+.++-. .++.++.++|+.|......|++.+.-+.
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~ 157 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACL 157 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHH
Confidence 457999999999998865 7899999999999999999998877554
No 88
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=95.18 E-value=1.8 Score=37.04 Aligned_cols=172 Identities=15% Similarity=0.104 Sum_probs=95.8
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCC-----CCCcccCCCCCCCceeeeeeEeCCeEEEEcCcCCCCCCC
Q 019186 101 AGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPV-----TRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSI 175 (345)
Q Consensus 101 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~-----t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~~~ 175 (345)
++++|++.+.. .+.++.|.-. .++..+.-.+|.+-.+.+.++.+|.+|.--. ..
T Consensus 30 ~~~iy~~~~~~---------------~~~v~ey~~~~~f~~~~~~~~~~~Lp~~~~GtG~vVYngslYY~~~------~s 88 (250)
T PF02191_consen 30 SEKIYVTSGFS---------------GNTVYEYRNYEDFLRNGRSSRTYKLPYPWQGTGHVVYNGSLYYNKY------NS 88 (250)
T ss_pred CCCEEEECccC---------------CCEEEEEcCHhHHhhcCCCceEEEEeceeccCCeEEECCcEEEEec------CC
Confidence 46788887752 2245555332 2223333345555667788889999987754 25
Q ss_pred ceEEEEeCCCCceEeCCCCCcc-----------CCCceeEEEECCEEEEEec---C--cceEEEEECCCC----Ceeecc
Q 019186 176 SQAEMYDPEKDVWVPIPDLHRT-----------HNSACTGVVIGGKVHVLHK---G--LSTVQVLDHMGL----GWTVED 235 (345)
Q Consensus 176 ~~v~~yd~~~~~W~~~~~~~~~-----------~~~~~~~~~~~~~iyv~gG---~--~~~i~~yd~~~~----~W~~~~ 235 (345)
+.+..||+.+++-..-..+|.+ .....-.++-++-|+|+-. . .-.+-..|+.+- .|..--
T Consensus 89 ~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T~~ 168 (250)
T PF02191_consen 89 RNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNTSY 168 (250)
T ss_pred ceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEecc
Confidence 6799999999865422223322 0111223444566777743 1 233456676543 565432
Q ss_pred CCCCCCceEEEcCeEEEEeC------cEEEEecCCc-eEEeccchhhcccceeEEEEE---CCeEEEE
Q 019186 236 YGWLQGPMAIVHDSVYLMSH------GLIIKQHRDV-RKVVASASEFRRRIGFAMIGM---GDDIYVI 293 (345)
Q Consensus 236 ~~~~~~~~~~~~~~l~~~~~------~~i~~~d~~~-W~~~~~~p~~~~r~~~~~~~~---~~~l~i~ 293 (345)
.-+....+-++-|.||++.. .-.+.||..+ =.+...++...+-...++... +.+||+.
T Consensus 169 ~k~~~~naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~w 236 (250)
T PF02191_consen 169 PKRSAGNAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDKKLYAW 236 (250)
T ss_pred CchhhcceeeEeeEEEEEEECCCCCcEEEEEEECCCCceeceeeeeccccCceEeeeECCCCCeEEEE
Confidence 22223445667889999986 3557888876 233333442223233444444 5678886
No 89
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.14 E-value=2.1 Score=37.68 Aligned_cols=212 Identities=10% Similarity=0.059 Sum_probs=91.9
Q ss_pred CcEEEEEecCCCCeEEEEeCCCCCEEeCCCCCccccccceeEEEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEe
Q 019186 55 ENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYD 134 (345)
Q Consensus 55 ~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd 134 (345)
.+.-|++|.. ..++.=+=--.+|+.+..-..........++...++..|++|.. ..+++-.
T Consensus 27 ~~~G~~VG~~--g~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~-----------------g~ll~T~ 87 (302)
T PF14870_consen 27 PNHGWAVGAY--GTILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEP-----------------GLLLHTT 87 (302)
T ss_dssp SS-EEEEETT--TEEEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEEET-----------------TEEEEES
T ss_pred CCEEEEEecC--CEEEEECCCCccccccccCCCccceeeEEEEEecCCceEEEcCC-----------------ceEEEec
Confidence 5566666642 23322222335798876333221112233455568889998742 2355555
Q ss_pred CCCCCcccCCC-CCCCceeeeeeEe-CCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeEE-EECCEE
Q 019186 135 PVTRQWSPRAS-MLVPRAMFACCAL-KEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGV-VIGGKV 211 (345)
Q Consensus 135 ~~t~~W~~~~~-~~~~r~~~~~~~~-~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~-~~~~~i 211 (345)
-.-.+|++++. .+.+...+.+..+ ++.+.+++.. ..++.=.-.-.+|+.+..-... . ...+. .-++++
T Consensus 88 DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~-------G~iy~T~DgG~tW~~~~~~~~g-s-~~~~~r~~dG~~ 158 (302)
T PF14870_consen 88 DGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDR-------GAIYRTTDGGKTWQAVVSETSG-S-INDITRSSDGRY 158 (302)
T ss_dssp STTSS-EE----TT-SS-EEEEEEEETTEEEEEETT---------EEEESSTTSSEEEEE-S------EEEEEE-TTS-E
T ss_pred CCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCC-------CcEEEeCCCCCCeeEcccCCcc-e-eEeEEECCCCcE
Confidence 56678999862 2333334444444 4566666532 1244444455689976443222 1 22223 336676
Q ss_pred EEEecCcceEEEEECCCCCeeeccCCCC---CCceEEEcCeEEEEeC-cEEEEec-CCc---eEEeccchhhccccee-E
Q 019186 212 HVLHKGLSTVQVLDHMGLGWTVEDYGWL---QGPMAIVHDSVYLMSH-GLIIKQH-RDV---RKVVASASEFRRRIGF-A 282 (345)
Q Consensus 212 yv~gG~~~~i~~yd~~~~~W~~~~~~~~---~~~~~~~~~~l~~~~~-~~i~~~d-~~~---W~~~~~~p~~~~r~~~-~ 282 (345)
++++..-+.+...|+-...|+....... .......++.|+++.. +.+..=+ ++. |++.. .|.....++. .
T Consensus 159 vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~-~~~~~~~~~~ld 237 (302)
T PF14870_consen 159 VAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPI-IPIKTNGYGILD 237 (302)
T ss_dssp EEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B--TTSS--S-EEE
T ss_pred EEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCcccccccc-CCcccCceeeEE
Confidence 6666444445577888888988754322 2223345778888876 4544444 232 88832 2211122221 2
Q ss_pred EEEE-CCeEEEEcc
Q 019186 283 MIGM-GDDIYVIGG 295 (345)
Q Consensus 283 ~~~~-~~~l~i~GG 295 (345)
++.. ++.+++.||
T Consensus 238 ~a~~~~~~~wa~gg 251 (302)
T PF14870_consen 238 LAYRPPNEIWAVGG 251 (302)
T ss_dssp EEESSSS-EEEEES
T ss_pred EEecCCCCEEEEeC
Confidence 2222 678999988
No 90
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=95.12 E-value=1.9 Score=37.00 Aligned_cols=82 Identities=15% Similarity=0.151 Sum_probs=51.3
Q ss_pred CCCCccccccceeEEEEE--CCE--EEEEcCCCCCCCCCCCCC-CCC----cCcCceEEEeCCCCCcc--cCCCCCCCce
Q 019186 83 PVLPSKIRHLAHFGVVST--AGK--LFVLGGGSDAVDPLTGDQ-DGS----FATNEVWSYDPVTRQWS--PRASMLVPRA 151 (345)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~--~~~--lyv~GG~~~~~~~~~~~~-~~~----~~~~~~~~yd~~t~~W~--~~~~~~~~r~ 151 (345)
..+|.. |..|++.++ .|+ ..+|||+.-. |..... .++ .....++..|+.-+-.+ .++.+....+
T Consensus 82 GdvP~a---RYGHt~~vV~SrGKta~VlFGGRSY~--P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~S 156 (337)
T PF03089_consen 82 GDVPEA---RYGHTINVVHSRGKTACVLFGGRSYM--PPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQS 156 (337)
T ss_pred CCCCcc---cccceEEEEEECCcEEEEEECCcccC--CccccchhhcceeccCCCeEEEEeccccccccccchhhcCCeE
Confidence 455554 899886665 343 7889986311 111110 011 12345677777665443 3566777778
Q ss_pred eeeeeEeCCeEEEEcCcC
Q 019186 152 MFACCALKEKIVVAGGFT 169 (345)
Q Consensus 152 ~~~~~~~~~~iyv~gG~~ 169 (345)
.|.+.+-++.+|++||..
T Consensus 157 FHvslar~D~VYilGGHs 174 (337)
T PF03089_consen 157 FHVSLARNDCVYILGGHS 174 (337)
T ss_pred EEEEEecCceEEEEccEE
Confidence 888888899999999986
No 91
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=95.08 E-value=1.9 Score=36.86 Aligned_cols=187 Identities=15% Similarity=0.081 Sum_probs=100.6
Q ss_pred CCCcEEEEEecCCCCeEEEEeCCCC-----CEEeCCCCCccccccceeEEEEECCEEEEEcCCCCCCCCCCCCCCCCcCc
Q 019186 53 SSENLLCVCAFDPENLWQLYDPLRD-----LWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFAT 127 (345)
Q Consensus 53 ~~~~~l~v~gg~~~~~~~~yd~~~~-----~W~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~ 127 (345)
..++.+|++.+...+.++.|..... +....-.+|.+ -.+-+.++.+|.+|.--. .+
T Consensus 28 ~~~~~iy~~~~~~~~~v~ey~~~~~f~~~~~~~~~~~Lp~~---~~GtG~vVYngslYY~~~----------------~s 88 (250)
T PF02191_consen 28 SDSEKIYVTSGFSGNTVYEYRNYEDFLRNGRSSRTYKLPYP---WQGTGHVVYNGSLYYNKY----------------NS 88 (250)
T ss_pred CCCCCEEEECccCCCEEEEEcCHhHHhhcCCCceEEEEece---eccCCeEEECCcEEEEec----------------CC
Confidence 3467888888766567777643322 22222223332 344456677888776543 26
Q ss_pred CceEEEeCCCCCcccCCCCCCC------------ceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCC----ceEeC
Q 019186 128 NEVWSYDPVTRQWSPRASMLVP------------RAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKD----VWVPI 191 (345)
Q Consensus 128 ~~~~~yd~~t~~W~~~~~~~~~------------r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~----~W~~~ 191 (345)
+.+.+||+.+++-.....+|.+ ....-.++-.+-|++|=...+. ...-.+-..|+++- +|..
T Consensus 89 ~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~-~g~ivvskld~~tL~v~~tw~T- 166 (250)
T PF02191_consen 89 RNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDN-NGNIVVSKLDPETLSVEQTWNT- 166 (250)
T ss_pred ceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCC-CCcEEEEeeCcccCceEEEEEe-
Confidence 7899999999875422222221 1122334444456666333221 11234455666543 5764
Q ss_pred CCCCccCCCceeEEEECCEEEEEec----CcceEEEEECCCCCeeeccCCCC----CCceEEE---cCeEEEEeCcEEEE
Q 019186 192 PDLHRTHNSACTGVVIGGKVHVLHK----GLSTVQVLDHMGLGWTVEDYGWL----QGPMAIV---HDSVYLMSHGLIIK 260 (345)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~iyv~gG----~~~~i~~yd~~~~~W~~~~~~~~----~~~~~~~---~~~l~~~~~~~i~~ 260 (345)
..+.. ....++.+=|.||++.. ...-.+.||+.+++=..+.-... ..++... +.+||+.+.+....
T Consensus 167 -~~~k~--~~~naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~wd~G~~v~ 243 (250)
T PF02191_consen 167 -SYPKR--SAGNAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDKKLYAWDNGYQVT 243 (250)
T ss_pred -ccCch--hhcceeeEeeEEEEEEECCCCCcEEEEEEECCCCceeceeeeeccccCceEeeeECCCCCeEEEEECCeEEE
Confidence 23333 23334555678888865 24456789998886654432211 2222222 56788887776666
Q ss_pred ecC
Q 019186 261 QHR 263 (345)
Q Consensus 261 ~d~ 263 (345)
|+.
T Consensus 244 Y~v 246 (250)
T PF02191_consen 244 YDV 246 (250)
T ss_pred EEE
Confidence 653
No 92
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.07 E-value=2.4 Score=40.31 Aligned_cols=166 Identities=14% Similarity=0.040 Sum_probs=90.9
Q ss_pred eeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCc--eEeCCCCC----ccCCCceeEEEEC-CEEEEEecCcceEEEEEC
Q 019186 154 ACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDV--WVPIPDLH----RTHNSACTGVVIG-GKVHVLHKGLSTVQVLDH 226 (345)
Q Consensus 154 ~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~----~~~~~~~~~~~~~-~~iyv~gG~~~~i~~yd~ 226 (345)
+.++.++++|+.... ..+..+|.++.+ |+.-...+ .........+..+ +++|+.. ....++++|.
T Consensus 56 sPvv~~g~vy~~~~~-------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~-~~g~v~AlD~ 127 (488)
T cd00216 56 TPLVVDGDMYFTTSH-------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGT-FDGRLVALDA 127 (488)
T ss_pred CCEEECCEEEEeCCC-------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEec-CCCeEEEEEC
Confidence 446779999987542 348889988764 87532221 0101111224446 8888765 4678999999
Q ss_pred CCC--CeeeccCCC------CCCceEEEcCeEEEEe----------CcEEEEecCCc----eEEeccchh--hccc----
Q 019186 227 MGL--GWTVEDYGW------LQGPMAIVHDSVYLMS----------HGLIIKQHRDV----RKVVASASE--FRRR---- 278 (345)
Q Consensus 227 ~~~--~W~~~~~~~------~~~~~~~~~~~l~~~~----------~~~i~~~d~~~----W~~~~~~p~--~~~r---- 278 (345)
+++ .|+.-.... ...+.++.++.+|+-. .+.++.+|.++ |+.-...+. ..+.
T Consensus 128 ~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~ 207 (488)
T cd00216 128 ETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPD 207 (488)
T ss_pred CCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCC
Confidence 866 587654332 1344456677777643 15789999876 875432110 0010
Q ss_pred ----------ceeEEEE--ECCeEEEEcceecCCC--C---cccccccCceeeeccCCCCCceeEc
Q 019186 279 ----------IGFAMIG--MGDDIYVIGGVIGPDR--W---NWDIKPMSDVDVLTVGAERPTWRQV 327 (345)
Q Consensus 279 ----------~~~~~~~--~~~~l~i~GG~~~~~~--~---~~~~~~~~~v~~yd~~~~~~~W~~v 327 (345)
.....+. -++.||+-.+...... . ..+-...+.++.+|.++.+..|+.-
T Consensus 208 ~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~ 273 (488)
T cd00216 208 RQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQ 273 (488)
T ss_pred cceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEee
Confidence 0011121 2456666544211000 0 0000233479999999988889853
No 93
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=94.98 E-value=2.4 Score=41.21 Aligned_cols=143 Identities=10% Similarity=0.020 Sum_probs=80.7
Q ss_pred CeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeEEEECCEEEEEecCcceEEEEECCCCCee-eccCCC
Q 019186 160 EKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWT-VEDYGW 238 (345)
Q Consensus 160 ~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~i~~yd~~~~~W~-~~~~~~ 238 (345)
|.-..+|+.. +..+.+|+-+++++..-..-... +.....-.-||.+.+.|+.-+.+-.+|..++-.. ......
T Consensus 319 GDWiA~g~~k-----lgQLlVweWqsEsYVlKQQgH~~-~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHt 392 (893)
T KOG0291|consen 319 GDWIAFGCSK-----LGQLLVWEWQSESYVLKQQGHSD-RITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHT 392 (893)
T ss_pred CCEEEEcCCc-----cceEEEEEeeccceeeecccccc-ceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCC
Confidence 5666776643 45688888777766533221112 2122222347888888887777888887665321 111111
Q ss_pred CCC---ceEEEcCeEEEEeC-cEEEEecCCceEEeccchhhcccceeEEEEEC--CeEEEEcceecCCCCcccccccCce
Q 019186 239 LQG---PMAIVHDSVYLMSH-GLIIKQHRDVRKVVASASEFRRRIGFAMIGMG--DDIYVIGGVIGPDRWNWDIKPMSDV 312 (345)
Q Consensus 239 ~~~---~~~~~~~~l~~~~~-~~i~~~d~~~W~~~~~~p~~~~r~~~~~~~~~--~~l~i~GG~~~~~~~~~~~~~~~~v 312 (345)
... .....+..++...- +.+-.+|....+....... ..|..++.+..+ |.|++.|+.+.- ++
T Consensus 393 s~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~-P~p~QfscvavD~sGelV~AG~~d~F-----------~I 460 (893)
T KOG0291|consen 393 SGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTS-PEPIQFSCVAVDPSGELVCAGAQDSF-----------EI 460 (893)
T ss_pred CceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecC-CCceeeeEEEEcCCCCEEEeeccceE-----------EE
Confidence 111 11222333333333 7888888877444333332 244555666666 889998886554 78
Q ss_pred eeeccCCC
Q 019186 313 DVLTVGAE 320 (345)
Q Consensus 313 ~~yd~~~~ 320 (345)
++|+.+++
T Consensus 461 fvWS~qTG 468 (893)
T KOG0291|consen 461 FVWSVQTG 468 (893)
T ss_pred EEEEeecC
Confidence 89999888
No 94
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.95 E-value=3.2 Score=39.91 Aligned_cols=167 Identities=14% Similarity=0.124 Sum_probs=95.6
Q ss_pred eeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCC--ceEeCCCCCccCC-------CceeEEEECCEEEEEecCcceEEE
Q 019186 153 FACCALKEKIVVAGGFTSCRKSISQAEMYDPEKD--VWVPIPDLHRTHN-------SACTGVVIGGKVHVLHKGLSTVQV 223 (345)
Q Consensus 153 ~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~-------~~~~~~~~~~~iyv~gG~~~~i~~ 223 (345)
.+-++.++.||+.... ..+..+|.++. .|+.-...+.... ...+.+..++++|+.. ....+++
T Consensus 63 stPvv~~g~vyv~s~~-------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t-~dg~l~A 134 (527)
T TIGR03075 63 SQPLVVDGVMYVTTSY-------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGT-LDARLVA 134 (527)
T ss_pred cCCEEECCEEEEECCC-------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEc-CCCEEEE
Confidence 3445679999986542 24888998876 4875433221101 1123456788888754 4567999
Q ss_pred EECCCC--CeeeccCCC-----CCCceEEEcCeEEEEeC-------cEEEEecCCc----eEEeccchhhc---------
Q 019186 224 LDHMGL--GWTVEDYGW-----LQGPMAIVHDSVYLMSH-------GLIIKQHRDV----RKVVASASEFR--------- 276 (345)
Q Consensus 224 yd~~~~--~W~~~~~~~-----~~~~~~~~~~~l~~~~~-------~~i~~~d~~~----W~~~~~~p~~~--------- 276 (345)
+|.+++ .|+.-.... ...+-++.++.+|+-.. +.++.||.++ |+.-...+...
T Consensus 135 LDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~ 214 (527)
T TIGR03075 135 LDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPV 214 (527)
T ss_pred EECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccccccccc
Confidence 999877 476532211 13445667888888642 6899999887 77432111000
Q ss_pred --------------ccce---eEEEEEC---CeEEEEcceecC---CCCcccccccCceeeeccCCCCCceeEc
Q 019186 277 --------------RRIG---FAMIGMG---DDIYVIGGVIGP---DRWNWDIKPMSDVDVLTVGAERPTWRQV 327 (345)
Q Consensus 277 --------------~r~~---~~~~~~~---~~l~i~GG~~~~---~~~~~~~~~~~~v~~yd~~~~~~~W~~v 327 (345)
.+.+ -....+| +.||+--|.-.. .....+-.+.+++...|+++.+..|.-.
T Consensus 215 ~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q 288 (527)
T TIGR03075 215 GGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQ 288 (527)
T ss_pred ccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeee
Confidence 0100 0011232 457766554111 1111122567899999999998888754
No 95
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.94 E-value=0.49 Score=45.35 Aligned_cols=115 Identities=13% Similarity=0.044 Sum_probs=70.2
Q ss_pred EEEECCEEEEEecCcceEEEEECCCC--CeeeccCCCC-----------CCceEEEcCeEEEEeC-cEEEEecCCc----
Q 019186 204 GVVIGGKVHVLHKGLSTVQVLDHMGL--GWTVEDYGWL-----------QGPMAIVHDSVYLMSH-GLIIKQHRDV---- 265 (345)
Q Consensus 204 ~~~~~~~iyv~gG~~~~i~~yd~~~~--~W~~~~~~~~-----------~~~~~~~~~~l~~~~~-~~i~~~d~~~---- 265 (345)
-++.++.||+.. ....++++|.+++ .|+.-..... ....++.++++|+... +.++.+|.++
T Consensus 65 Pvv~~g~vyv~s-~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 65 PLVVDGVMYVTT-SYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVV 143 (527)
T ss_pred CEEECCEEEEEC-CCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEE
Confidence 356799999876 3457999999876 5875432211 1224566888888665 7999999876
Q ss_pred eEEeccchhhcccceeEEEEECCeEEEEcceecCCCCcccccccCceeeeccCCCCCceeE
Q 019186 266 RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQ 326 (345)
Q Consensus 266 W~~~~~~p~~~~r~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~ 326 (345)
|+.-..-.........+-+..+++||+-....+. .....|..||.++.+..|+.
T Consensus 144 W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~-------~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 144 WSKKNGDYKAGYTITAAPLVVKGKVITGISGGEF-------GVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred eecccccccccccccCCcEEECCEEEEeeccccc-------CCCcEEEEEECCCCceeEec
Confidence 8764211100011222334567877664322111 12347889999998888974
No 96
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.94 E-value=1.9 Score=36.01 Aligned_cols=180 Identities=16% Similarity=0.159 Sum_probs=101.3
Q ss_pred CcEEEEEecCCCCeEEEEeCCCCCEEeCCC-CCccccccceeEEEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEE
Q 019186 55 ENLLCVCAFDPENLWQLYDPLRDLWITLPV-LPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSY 133 (345)
Q Consensus 55 ~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~-~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~y 133 (345)
+++....|. ...+.++||..+...+--. -... .... ..+.++.=+..||. ...+++|
T Consensus 29 GnY~ltcGs--drtvrLWNp~rg~liktYsghG~E---VlD~-~~s~Dnskf~s~Gg----------------Dk~v~vw 86 (307)
T KOG0316|consen 29 GNYCLTCGS--DRTVRLWNPLRGALIKTYSGHGHE---VLDA-ALSSDNSKFASCGG----------------DKAVQVW 86 (307)
T ss_pred CCEEEEcCC--CceEEeecccccceeeeecCCCce---eeec-cccccccccccCCC----------------CceEEEE
Confidence 554444443 4567788888775433211 1111 1111 22334444444443 3468999
Q ss_pred eCCCCCcccCCCCCCCceeeeeeEeC--CeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeEEEECCEE
Q 019186 134 DPVTRQWSPRASMLVPRAMFACCALK--EKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKV 211 (345)
Q Consensus 134 d~~t~~W~~~~~~~~~r~~~~~~~~~--~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~i 211 (345)
|.+|++-.+ .+...-..--++.+| ..+.+.|+.+ .++..||-.+++.+.+..+... ..+...+.+.+..
T Consensus 87 DV~TGkv~R--r~rgH~aqVNtV~fNeesSVv~SgsfD------~s~r~wDCRS~s~ePiQildea-~D~V~Si~v~~he 157 (307)
T KOG0316|consen 87 DVNTGKVDR--RFRGHLAQVNTVRFNEESSVVASGSFD------SSVRLWDCRSRSFEPIQILDEA-KDGVSSIDVAEHE 157 (307)
T ss_pred EcccCeeee--ecccccceeeEEEecCcceEEEecccc------ceeEEEEcccCCCCccchhhhh-cCceeEEEecccE
Confidence 999986221 111111222333443 3455556654 4589999999999888888887 7777888888888
Q ss_pred EEEecCcceEEEEECCCCCeeec-cCCCCCCceEEEcCeEEEEeC--cEEEEecCCc
Q 019186 212 HVLHKGLSTVQVLDHMGLGWTVE-DYGWLQGPMAIVHDSVYLMSH--GLIIKQHRDV 265 (345)
Q Consensus 212 yv~gG~~~~i~~yd~~~~~W~~~-~~~~~~~~~~~~~~~l~~~~~--~~i~~~d~~~ 265 (345)
.+.|..-.++-.||++.++-..- -..|.......-++...+.+. +.+...|.++
T Consensus 158 IvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~t 214 (307)
T KOG0316|consen 158 IVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKET 214 (307)
T ss_pred EEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccch
Confidence 88876667888999987765321 111111222222444444444 5555556655
No 97
>PRK04922 tolB translocation protein TolB; Provisional
Probab=94.65 E-value=3.8 Score=38.25 Aligned_cols=146 Identities=14% Similarity=0.010 Sum_probs=77.5
Q ss_pred CCeEEEEeCCCCCEEeCCCCCccccccceeEEEEECC-EEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccCC
Q 019186 66 ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAG-KLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPRA 144 (345)
Q Consensus 66 ~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~ 144 (345)
...++++|..+++-+.+...+.. .. ....+-+| +|++..... ...+++++|+.+++-+++.
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~g~---~~-~~~~SpDG~~l~~~~s~~--------------g~~~Iy~~d~~~g~~~~lt 288 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFRGI---NG-APSFSPDGRRLALTLSRD--------------GNPEIYVMDLGSRQLTRLT 288 (433)
T ss_pred CcEEEEEECCCCCEEEeccCCCC---cc-CceECCCCCEEEEEEeCC--------------CCceEEEEECCCCCeEECc
Confidence 45789999988887777655432 11 11222344 454443221 1347999999988766554
Q ss_pred CCCCCceeeeeeEeCCe-EEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeEEEECC-EEEEEec--Ccce
Q 019186 145 SMLVPRAMFACCALKEK-IVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGG-KVHVLHK--GLST 220 (345)
Q Consensus 145 ~~~~~r~~~~~~~~~~~-iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-~iyv~gG--~~~~ 220 (345)
......... ...-+++ |+......+ ...++.+|..+.+.+.+..-. . ........-++ .|++..+ ....
T Consensus 289 ~~~~~~~~~-~~spDG~~l~f~sd~~g----~~~iy~~dl~~g~~~~lt~~g-~-~~~~~~~SpDG~~Ia~~~~~~~~~~ 361 (433)
T PRK04922 289 NHFGIDTEP-TWAPDGKSIYFTSDRGG----RPQIYRVAASGGSAERLTFQG-N-YNARASVSPDGKKIAMVHGSGGQYR 361 (433)
T ss_pred cCCCCccce-EECCCCCEEEEEECCCC----CceEEEEECCCCCeEEeecCC-C-CccCEEECCCCCEEEEEECCCCcee
Confidence 322111111 1122444 444322221 246888898888877664211 1 11112223344 4555443 2346
Q ss_pred EEEEECCCCCeeeccC
Q 019186 221 VQVLDHMGLGWTVEDY 236 (345)
Q Consensus 221 i~~yd~~~~~W~~~~~ 236 (345)
++.+|+.+++.+.+..
T Consensus 362 I~v~d~~~g~~~~Lt~ 377 (433)
T PRK04922 362 IAVMDLSTGSVRTLTP 377 (433)
T ss_pred EEEEECCCCCeEECCC
Confidence 8899998888776653
No 98
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=94.62 E-value=0.91 Score=40.47 Aligned_cols=127 Identities=11% Similarity=0.127 Sum_probs=75.5
Q ss_pred CceEEEeCCCC-----CcccCCCCCCCceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCc-eEeCCCCCccCCCc
Q 019186 128 NEVWSYDPVTR-----QWSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDV-WVPIPDLHRTHNSA 201 (345)
Q Consensus 128 ~~~~~yd~~t~-----~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~-W~~~~~~~~~~~~~ 201 (345)
-.+.+|+.... +.+.+......-.-.+++.+++++.+.-| +.+.+|+...++ +...+.+..+ ...
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g--------~~l~v~~l~~~~~l~~~~~~~~~-~~i 132 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG--------NKLYVYDLDNSKTLLKKAFYDSP-FYI 132 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET--------TEEEEEEEETTSSEEEEEEE-BS-SSE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec--------CEEEEEEccCcccchhhheecce-EEE
Confidence 56888888774 44444443444445677778888766655 348889888888 8877777666 566
Q ss_pred eeEEEECCEEEEEec-CcceEEEEECCCCCeeeccCCCC---CCceEEE-cCeEEEE-eC-cE--EEEecC
Q 019186 202 CTGVVIGGKVHVLHK-GLSTVQVLDHMGLGWTVEDYGWL---QGPMAIV-HDSVYLM-SH-GL--IIKQHR 263 (345)
Q Consensus 202 ~~~~~~~~~iyv~gG-~~~~i~~yd~~~~~W~~~~~~~~---~~~~~~~-~~~l~~~-~~-~~--i~~~d~ 263 (345)
.+..+.++.|++..- ..-.+..|+....+...+..... ..++..+ ++..++. +. +. ++.+++
T Consensus 133 ~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 133 TSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred EEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 677788887765542 33445567876666776654433 2333344 5543333 33 43 445554
No 99
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=94.56 E-value=3 Score=38.44 Aligned_cols=181 Identities=14% Similarity=0.105 Sum_probs=92.7
Q ss_pred cCceEEEeCCCCCcccCCCCCCCceeeeee--EeCCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeE
Q 019186 127 TNEVWSYDPVTRQWSPRASMLVPRAMFACC--ALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTG 204 (345)
Q Consensus 127 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~--~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~ 204 (345)
..++++++...++-+++.-.. |....++ .-++.|.|.--.. ..+....+.|....+--. ..+++.. ..+.
T Consensus 106 taDly~v~~e~Ge~kRiTyfG--r~fT~VaG~~~dg~iiV~TD~~--tPF~q~~~lYkv~~dg~~-~e~LnlG---path 177 (668)
T COG4946 106 TADLYVVPSEDGEAKRITYFG--RRFTRVAGWIPDGEIIVSTDFH--TPFSQWTELYKVNVDGIK-TEPLNLG---PATH 177 (668)
T ss_pred cccEEEEeCCCCcEEEEEEec--cccceeeccCCCCCEEEEeccC--CCcccceeeeEEccCCce-eeeccCC---ceee
Confidence 568999999888776665442 2222222 2367777775433 222334455554443321 1222222 2233
Q ss_pred EEECCEEEEEec--------------CcceEEEEECCCCCeeeccCCCC-CCceEEEcCeEEEEeC----cEEEEecCCc
Q 019186 205 VVIGGKVHVLHK--------------GLSTVQVLDHMGLGWTVEDYGWL-QGPMAIVHDSVYLMSH----GLIIKQHRDV 265 (345)
Q Consensus 205 ~~~~~~iyv~gG--------------~~~~i~~yd~~~~~W~~~~~~~~-~~~~~~~~~~l~~~~~----~~i~~~d~~~ 265 (345)
.+..+.+.++|- ....+|.=--....+...-.+.. ...-+++++++|.+.. +++|.-|.+.
T Consensus 178 iv~~dg~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV~~RvYFlsD~eG~GnlYSvdldG 257 (668)
T COG4946 178 IVIKDGIIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIVGERVYFLSDHEGVGNLYSVDLDG 257 (668)
T ss_pred EEEeCCEEEEccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCceEEcceEEEEecccCccceEEeccCC
Confidence 344433556653 22333332222223333333322 3444678999999987 7888877665
Q ss_pred --eEEeccchhhcccceeEEEEECCeEEEEcceecCCCCcccccccCceeeeccCCCCCceeEcC-CCCCcc
Q 019186 266 --RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVS-PMTRCR 334 (345)
Q Consensus 266 --W~~~~~~p~~~~r~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~v~-~~~~~r 334 (345)
-++......--+| -+.-+|+-++|. ...|+|.|||+++ .-.++. .||..|
T Consensus 258 kDlrrHTnFtdYY~R----~~nsDGkrIvFq-------------~~GdIylydP~td--~lekldI~lpl~r 310 (668)
T COG4946 258 KDLRRHTNFTDYYPR----NANSDGKRIVFQ-------------NAGDIYLYDPETD--SLEKLDIGLPLDR 310 (668)
T ss_pred chhhhcCCchhcccc----ccCCCCcEEEEe-------------cCCcEEEeCCCcC--cceeeecCCcccc
Confidence 3333332221222 244566666652 2238999999998 444442 344443
No 100
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=94.43 E-value=4.5 Score=38.15 Aligned_cols=96 Identities=13% Similarity=0.167 Sum_probs=53.8
Q ss_pred cCceEEEeCCCCCcccCCCCCCCceeeeeeEeC--CeEEEEcCcCCCCCCCceEEEEeCCCCceE-e------CCCCCcc
Q 019186 127 TNEVWSYDPVTRQWSPRASMLVPRAMFACCALK--EKIVVAGGFTSCRKSISQAEMYDPEKDVWV-P------IPDLHRT 197 (345)
Q Consensus 127 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~--~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~-~------~~~~~~~ 197 (345)
..++|++|+..++|-..-.... ...-++.++ ..|+++|+..+ .|+.+|+.+.+-. . +...|..
T Consensus 154 g~evYRlNLEqGrfL~P~~~~~--~~lN~v~in~~hgLla~Gt~~g------~VEfwDpR~ksrv~~l~~~~~v~s~pg~ 225 (703)
T KOG2321|consen 154 GSEVYRLNLEQGRFLNPFETDS--GELNVVSINEEHGLLACGTEDG------VVEFWDPRDKSRVGTLDAASSVNSHPGG 225 (703)
T ss_pred CcceEEEEcccccccccccccc--ccceeeeecCccceEEecccCc------eEEEecchhhhhheeeecccccCCCccc
Confidence 4689999999998854322221 111222222 34677777553 4899999876532 1 1122222
Q ss_pred -CCCceeEEEE-CCEEEEEec-CcceEEEEECCCCC
Q 019186 198 -HNSACTGVVI-GGKVHVLHK-GLSTVQVLDHMGLG 230 (345)
Q Consensus 198 -~~~~~~~~~~-~~~iyv~gG-~~~~i~~yd~~~~~ 230 (345)
.....++..+ |+-|.+.-| ....+++||+++.+
T Consensus 226 ~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 226 DAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK 261 (703)
T ss_pred cccCcceEEEecCCceeEEeeccCCcEEEEEcccCC
Confidence 0111233334 446766655 67789999998764
No 101
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.35 E-value=2.5 Score=34.73 Aligned_cols=157 Identities=13% Similarity=0.015 Sum_probs=97.5
Q ss_pred ceeEEEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCC--cccCCCCCCCceeeeeeEeCCeEEEEcCcCC
Q 019186 93 AHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQ--WSPRASMLVPRAMFACCALKEKIVVAGGFTS 170 (345)
Q Consensus 93 ~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~ 170 (345)
+..++...+|++|.-.|..+ .+.+.++|..+.+ |++--+ +....+-+.+.+++.+|..--..
T Consensus 47 fTQGL~~~~g~i~esTG~yg--------------~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw~e- 110 (262)
T COG3823 47 FTQGLEYLDGHILESTGLYG--------------FSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTWKE- 110 (262)
T ss_pred hhcceeeeCCEEEEeccccc--------------cceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEecc-
Confidence 44467788999999888653 5679999998766 433212 23344567888899999986533
Q ss_pred CCCCCceEEEEeCCCCceEeCCCCCccCCCceeEEEECCEEEEEecCcceEEEEECCCC----CeeeccCCCC---CCce
Q 019186 171 CRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGL----GWTVEDYGWL---QGPM 243 (345)
Q Consensus 171 ~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~i~~yd~~~~----~W~~~~~~~~---~~~~ 243 (345)
.....||+.+ ...+...+-+ ..+-+.+.-+..|....| ...++.-||++= +=+..-+..+ -.-+
T Consensus 111 -----gvaf~~d~~t--~~~lg~~~y~-GeGWgLt~d~~~LimsdG-satL~frdP~tfa~~~~v~VT~~g~pv~~LNEL 181 (262)
T COG3823 111 -----GVAFKYDADT--LEELGRFSYE-GEGWGLTSDDKNLIMSDG-SATLQFRDPKTFAELDTVQVTDDGVPVSKLNEL 181 (262)
T ss_pred -----ceeEEEChHH--hhhhcccccC-CcceeeecCCcceEeeCC-ceEEEecCHHHhhhcceEEEEECCeecccccce
Confidence 2367788655 3344555555 445666666666665554 666777777532 1111111111 2234
Q ss_pred EEEcCeEEEEeC--cEEEEecCCc-----eEEeccchh
Q 019186 244 AIVHDSVYLMSH--GLIIKQHRDV-----RKVVASASE 274 (345)
Q Consensus 244 ~~~~~~l~~~~~--~~i~~~d~~~-----W~~~~~~p~ 274 (345)
..++|.+|.--. ..|...||++ |..+..++.
T Consensus 182 E~VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~ 219 (262)
T COG3823 182 EWVDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLK 219 (262)
T ss_pred eeeccEEEEeeeeecceEEEcCCCCcEEEEEEccCCch
Confidence 456666665444 7899999987 988877763
No 102
>PRK00178 tolB translocation protein TolB; Provisional
Probab=94.23 E-value=4.7 Score=37.54 Aligned_cols=146 Identities=10% Similarity=-0.051 Sum_probs=77.9
Q ss_pred CCeEEEEeCCCCCEEeCCCCCccccccceeEEEEECCE-EEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccCC
Q 019186 66 ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGK-LFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPRA 144 (345)
Q Consensus 66 ~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~-lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~ 144 (345)
...++++|..+++-+.+...... .. ....+-+|+ |++..... ...+++++|..+++.+++.
T Consensus 222 ~~~l~~~~l~~g~~~~l~~~~g~---~~-~~~~SpDG~~la~~~~~~--------------g~~~Iy~~d~~~~~~~~lt 283 (430)
T PRK00178 222 RPRIFVQNLDTGRREQITNFEGL---NG-APAWSPDGSKLAFVLSKD--------------GNPEIYVMDLASRQLSRVT 283 (430)
T ss_pred CCEEEEEECCCCCEEEccCCCCC---cC-CeEECCCCCEEEEEEccC--------------CCceEEEEECCCCCeEEcc
Confidence 45788999998887777654421 11 112222444 44433211 1357999999998877665
Q ss_pred CCCCCceeeeeeEeCC-eEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeEEEEC-CEEEEEec--Ccce
Q 019186 145 SMLVPRAMFACCALKE-KIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIG-GKVHVLHK--GLST 220 (345)
Q Consensus 145 ~~~~~r~~~~~~~~~~-~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~~iyv~gG--~~~~ 220 (345)
......... ...-++ .|+...... ....++.+|..+.+++.+.... . ........-+ +.|++... ....
T Consensus 284 ~~~~~~~~~-~~spDg~~i~f~s~~~----g~~~iy~~d~~~g~~~~lt~~~-~-~~~~~~~Spdg~~i~~~~~~~~~~~ 356 (430)
T PRK00178 284 NHPAIDTEP-FWGKDGRTLYFTSDRG----GKPQIYKVNVNGGRAERVTFVG-N-YNARPRLSADGKTLVMVHRQDGNFH 356 (430)
T ss_pred cCCCCcCCe-EECCCCCEEEEEECCC----CCceEEEEECCCCCEEEeecCC-C-CccceEECCCCCEEEEEEccCCceE
Confidence 432211111 112244 454443221 1356889999888877664211 1 1111222233 44555432 2345
Q ss_pred EEEEECCCCCeeeccC
Q 019186 221 VQVLDHMGLGWTVEDY 236 (345)
Q Consensus 221 i~~yd~~~~~W~~~~~ 236 (345)
++.+|+.++..+.+..
T Consensus 357 l~~~dl~tg~~~~lt~ 372 (430)
T PRK00178 357 VAAQDLQRGSVRILTD 372 (430)
T ss_pred EEEEECCCCCEEEccC
Confidence 8889998888777653
No 103
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=94.08 E-value=2.8 Score=34.34 Aligned_cols=95 Identities=12% Similarity=0.059 Sum_probs=52.7
Q ss_pred CCeEEEEcCcCCCCCCCceEEEEeCCCCce---EeCCC--CCc-cCCCceeEEEE--CCEEEEEecCcceEEEEECCCCC
Q 019186 159 KEKIVVAGGFTSCRKSISQAEMYDPEKDVW---VPIPD--LHR-THNSACTGVVI--GGKVHVLHKGLSTVQVLDHMGLG 230 (345)
Q Consensus 159 ~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W---~~~~~--~~~-~~~~~~~~~~~--~~~iyv~gG~~~~i~~yd~~~~~ 230 (345)
++++|++-|. ..+.||..+... +.+.. .+. ....- ++... ++++|++-| +..++||..+++
T Consensus 62 ~~~~yfFkg~--------~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iD-AA~~~~~~~~~yfFkg--~~y~ry~~~~~~ 130 (194)
T cd00094 62 TGKIYFFKGD--------KYWVYTGKNLEPGYPKPISDLGFPPTVKQID-AALRWPDNGKTYFFKG--DKYWRYDEKTQK 130 (194)
T ss_pred CCEEEEECCC--------EEEEEcCcccccCCCcchhhcCCCCCCCCcc-EEEEEcCCCEEEEEeC--CEEEEEeCCCcc
Confidence 3889999763 367777554221 11111 111 00112 22333 689999975 667888875543
Q ss_pred ------------eeeccCCCCCCceEEEcCeEEEEeCcEEEEecCCc
Q 019186 231 ------------WTVEDYGWLQGPMAIVHDSVYLMSHGLIIKQHRDV 265 (345)
Q Consensus 231 ------------W~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~d~~~ 265 (345)
|.-++.. ..+++...++.+|++.+...+.||..+
T Consensus 131 v~~~yP~~i~~~w~g~p~~-idaa~~~~~~~~yfF~g~~y~~~d~~~ 176 (194)
T cd00094 131 MDPGYPKLIETDFPGVPDK-VDAAFRWLDGYYYFFKGDQYWRFDPRS 176 (194)
T ss_pred ccCCCCcchhhcCCCcCCC-cceeEEeCCCcEEEEECCEEEEEeCcc
Confidence 3222110 123333334889999999999998765
No 104
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=93.81 E-value=2.5 Score=36.27 Aligned_cols=119 Identities=13% Similarity=0.120 Sum_probs=68.0
Q ss_pred EEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccCCCCCCCceeeeeeEe--CCeEEEEcCcCCCCCC
Q 019186 97 VVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPRASMLVPRAMFACCAL--KEKIVVAGGFTSCRKS 174 (345)
Q Consensus 97 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~gG~~~~~~~ 174 (345)
++.-+|.+|+..=. -+-+-+.|+.+..=+.++..........-+-. .+++.+-- ..
T Consensus 195 ~atpdGsvwyasla----------------gnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~witt------wg 252 (353)
T COG4257 195 CATPDGSVWYASLA----------------GNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITT------WG 252 (353)
T ss_pred EECCCCcEEEEecc----------------ccceEEcccccCCcceecCCCcccccccccccCccCcEEEec------cC
Confidence 33457888887321 23567788877754444332221222222222 34555441 11
Q ss_pred CceEEEEeCCCCceEeCCCCCccCCCceeEEEE--CCEEEEEecCcceEEEEECCCCCeeeccCCCC
Q 019186 175 ISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVI--GGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWL 239 (345)
Q Consensus 175 ~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~--~~~iyv~gG~~~~i~~yd~~~~~W~~~~~~~~ 239 (345)
...+..|||.+.+|.+-+ +|.. ....-.+.+ .+++++.--..+.|.+||+.+.+++.++....
T Consensus 253 ~g~l~rfdPs~~sW~eyp-LPgs-~arpys~rVD~~grVW~sea~agai~rfdpeta~ftv~p~pr~ 317 (353)
T COG4257 253 TGSLHRFDPSVTSWIEYP-LPGS-KARPYSMRVDRHGRVWLSEADAGAIGRFDPETARFTVLPIPRP 317 (353)
T ss_pred CceeeEeCcccccceeee-CCCC-CCCcceeeeccCCcEEeeccccCceeecCcccceEEEecCCCC
Confidence 346899999999999753 3332 112222333 35566643246789999999999999865444
No 105
>smart00284 OLF Olfactomedin-like domains.
Probab=93.54 E-value=4.3 Score=34.70 Aligned_cols=174 Identities=8% Similarity=0.025 Sum_probs=96.3
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeC----CCCCcccCCCCCCCceeeeeeEeCCeEEEEcCcCCCCCCCc
Q 019186 101 AGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDP----VTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSIS 176 (345)
Q Consensus 101 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~----~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~~~~ 176 (345)
++++|++.+... ....++.|.- ..+++.+.=.+|.+-.+.+.++.+|.+|.--.. ..
T Consensus 34 ~~~~wv~~~~~~-------------~~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~GtG~VVYngslYY~~~~------s~ 94 (255)
T smart00284 34 KSLYWYMPLNTR-------------VLRSVREYSSMSDFQMGKNPTDHPLPHAGQGTGVVVYNGSLYFNKFN------SH 94 (255)
T ss_pred CceEEEEccccC-------------CCcEEEEecCHHHHhccCCceEEECCCccccccEEEECceEEEEecC------Cc
Confidence 467888765421 1234555532 233333322456666778889999999986432 35
Q ss_pred eEEEEeCCCCceEeCCCCCccC-----------CCceeEEEECCEEEEEec---C--cceEEEEECCCC----CeeeccC
Q 019186 177 QAEMYDPEKDVWVPIPDLHRTH-----------NSACTGVVIGGKVHVLHK---G--LSTVQVLDHMGL----GWTVEDY 236 (345)
Q Consensus 177 ~v~~yd~~~~~W~~~~~~~~~~-----------~~~~~~~~~~~~iyv~gG---~--~~~i~~yd~~~~----~W~~~~~ 236 (345)
.+..||..+++-.....+|.+. ....-.++-++-|+++-. . .-.+-+.|+.+- .|..--.
T Consensus 95 ~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T~~~ 174 (255)
T smart00284 95 DICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATLTIENTWITTYN 174 (255)
T ss_pred cEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCcccceEEEEEEcCCC
Confidence 6999999998765333344320 111223444566777632 1 223346777654 5665322
Q ss_pred CCCCCceEEEcCeEEEEeC------cEEEEecCCc-eEEeccchhhcccceeEEEEE---CCeEEEE
Q 019186 237 GWLQGPMAIVHDSVYLMSH------GLIIKQHRDV-RKVVASASEFRRRIGFAMIGM---GDDIYVI 293 (345)
Q Consensus 237 ~~~~~~~~~~~~~l~~~~~------~~i~~~d~~~-W~~~~~~p~~~~r~~~~~~~~---~~~l~i~ 293 (345)
-+....+-++-|.||+... .--+.||..+ =.....+|...+...+++... +.+||+.
T Consensus 175 k~sa~naFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i~f~n~y~~~s~l~YNP~d~~LY~w 241 (255)
T smart00284 175 KRSASNAFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIPFENMYEYISMLDYNPNDRKLYAW 241 (255)
T ss_pred cccccccEEEeeEEEEEccCCCCCcEEEEEEECCCCccceeeeeeccccccceeceeCCCCCeEEEE
Confidence 2224455567789999974 4577889876 222233442223333444433 5678876
No 106
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=93.51 E-value=5.8 Score=36.13 Aligned_cols=153 Identities=15% Similarity=0.076 Sum_probs=92.5
Q ss_pred eeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCc--eEeCCCCCccCCCceeEEEECCEEEEEecCcceEEEEECCCC--C
Q 019186 155 CCALKEKIVVAGGFTSCRKSISQAEMYDPEKDV--WVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGL--G 230 (345)
Q Consensus 155 ~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~i~~yd~~~~--~ 230 (345)
.+..++++|+... + ..+..+|+++.+ |+.-..-... .........+|+||+-. ....+++||.+++ .
T Consensus 64 ~~~~dg~v~~~~~-~------G~i~A~d~~~g~~~W~~~~~~~~~-~~~~~~~~~~G~i~~g~-~~g~~y~ld~~~G~~~ 134 (370)
T COG1520 64 PADGDGTVYVGTR-D------GNIFALNPDTGLVKWSYPLLGAVA-QLSGPILGSDGKIYVGS-WDGKLYALDASTGTLV 134 (370)
T ss_pred cEeeCCeEEEecC-C------CcEEEEeCCCCcEEecccCcCcce-eccCceEEeCCeEEEec-ccceEEEEECCCCcEE
Confidence 3677899998711 1 158999999886 8743221011 11222333488888765 3447999999644 6
Q ss_pred eeeccCC-CC-CCceEEEcCeEEEEe-CcEEEEecCCc----eEEeccchhhcccceeEEEEECCeEEEEcceecCCCCc
Q 019186 231 WTVEDYG-WL-QGPMAIVHDSVYLMS-HGLIIKQHRDV----RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWN 303 (345)
Q Consensus 231 W~~~~~~-~~-~~~~~~~~~~l~~~~-~~~i~~~d~~~----W~~~~~~p~~~~r~~~~~~~~~~~l~i~GG~~~~~~~~ 303 (345)
|+..... +. .......++.+|... .+.++.++.++ |+.-...+ ...+.......-++.+|+-... . .
T Consensus 135 W~~~~~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~-~~~~~~~~~~~~~~~vy~~~~~-~-~--- 208 (370)
T COG1520 135 WSRNVGGSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAP-LSLSIYGSPAIASGTVYVGSDG-Y-D--- 208 (370)
T ss_pred EEEecCCCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCc-cccccccCceeecceEEEecCC-C-c---
Confidence 8765544 22 344556677888874 58999999886 88544332 1233333334455666664221 1 1
Q ss_pred ccccccCceeeeccCCCCCceeEcC
Q 019186 304 WDIKPMSDVDVLTVGAERPTWRQVS 328 (345)
Q Consensus 304 ~~~~~~~~v~~yd~~~~~~~W~~v~ 328 (345)
..++.+|++++...|.+-.
T Consensus 209 ------~~~~a~~~~~G~~~w~~~~ 227 (370)
T COG1520 209 ------GILYALNAEDGTLKWSQKV 227 (370)
T ss_pred ------ceEEEEEccCCcEeeeeee
Confidence 1678899988777898543
No 107
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=93.46 E-value=6.3 Score=36.38 Aligned_cols=146 Identities=14% Similarity=0.020 Sum_probs=77.0
Q ss_pred CCeEEEEeCCCCCEEeCCCCCccccccceeEEEEECC-EEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccCC
Q 019186 66 ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAG-KLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPRA 144 (345)
Q Consensus 66 ~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~ 144 (345)
...++++|..+++-..+...... ... ....-++ .|++..... ...+++.+|..+++.+++.
T Consensus 213 ~~~i~v~d~~~g~~~~~~~~~~~---~~~-~~~spDg~~l~~~~~~~--------------~~~~i~~~d~~~~~~~~l~ 274 (417)
T TIGR02800 213 KPEIYVQDLATGQREKVASFPGM---NGA-PAFSPDGSKLAVSLSKD--------------GNPDIYVMDLDGKQLTRLT 274 (417)
T ss_pred CcEEEEEECCCCCEEEeecCCCC---ccc-eEECCCCCEEEEEECCC--------------CCccEEEEECCCCCEEECC
Confidence 35788899988876665544322 111 1122244 455543321 1357999999988766664
Q ss_pred CCCCCceeeeeeEeCC-eEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeEEEECCEEEEEec---Ccce
Q 019186 145 SMLVPRAMFACCALKE-KIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHK---GLST 220 (345)
Q Consensus 145 ~~~~~r~~~~~~~~~~-~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~iyv~gG---~~~~ 220 (345)
......... ...-++ .|+......+ ...++.+|..+..++.+..-... .......-+++.+++.. ....
T Consensus 275 ~~~~~~~~~-~~s~dg~~l~~~s~~~g----~~~iy~~d~~~~~~~~l~~~~~~--~~~~~~spdg~~i~~~~~~~~~~~ 347 (417)
T TIGR02800 275 NGPGIDTEP-SWSPDGKSIAFTSDRGG----SPQIYMMDADGGEVRRLTFRGGY--NASPSWSPDGDLIAFVHREGGGFN 347 (417)
T ss_pred CCCCCCCCE-EECCCCCEEEEEECCCC----CceEEEEECCCCCEEEeecCCCC--ccCeEECCCCCEEEEEEccCCceE
Confidence 332111111 111244 4444432221 24789999988887766432111 11122333555444433 2347
Q ss_pred EEEEECCCCCeeeccC
Q 019186 221 VQVLDHMGLGWTVEDY 236 (345)
Q Consensus 221 i~~yd~~~~~W~~~~~ 236 (345)
++.+|+.++.++.+..
T Consensus 348 i~~~d~~~~~~~~l~~ 363 (417)
T TIGR02800 348 IAVMDLDGGGERVLTD 363 (417)
T ss_pred EEEEeCCCCCeEEccC
Confidence 8999998877776643
No 108
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=93.39 E-value=4.9 Score=34.88 Aligned_cols=174 Identities=16% Similarity=0.126 Sum_probs=97.6
Q ss_pred eCCCCCccccccceeEEEEECCEEEEEcCCCCCCCCCCC------CCCCCcCcCceEEEeCCCCC----cccCCCCCCCc
Q 019186 81 TLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTG------DQDGSFATNEVWSYDPVTRQ----WSPRASMLVPR 150 (345)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~------~~~~~~~~~~~~~yd~~t~~----W~~~~~~~~~r 150 (345)
.+.+.|.. ....+-++..+++.|| |||+-....-+-+ ..+.....+.+..||..+++ |++--.-+ +
T Consensus 27 lvG~~P~S-GGDTYNAV~~vDd~Iy-FGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih~~--~ 102 (339)
T PF09910_consen 27 LVGPPPTS-GGDTYNAVEWVDDFIY-FGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIHDK--T 102 (339)
T ss_pred eccCCCCC-CCccceeeeeecceEE-EeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccCCc--c
Confidence 44555543 3356667777777776 5665322111111 12233456788999988876 65433222 2
Q ss_pred eeeee---eE---eCCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeEEEECCEEEEE---ecCcceE
Q 019186 151 AMFAC---CA---LKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVL---HKGLSTV 221 (345)
Q Consensus 151 ~~~~~---~~---~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~iyv~---gG~~~~i 221 (345)
...+= .. ++++|++.-+- +...--++..|..+..=+.+.+-|.. . ....+|...+-+ -+....+
T Consensus 103 ~WaGEVSdIlYdP~~D~LLlAR~D---Gh~nLGvy~ldr~~g~~~~L~~~ps~-K---G~~~~D~a~F~i~~~~~g~~~i 175 (339)
T PF09910_consen 103 KWAGEVSDILYDPYEDRLLLARAD---GHANLGVYSLDRRTGKAEKLSSNPSL-K---GTLVHDYACFGINNFHKGVSGI 175 (339)
T ss_pred ccccchhheeeCCCcCEEEEEecC---CcceeeeEEEcccCCceeeccCCCCc-C---ceEeeeeEEEeccccccCCceE
Confidence 22221 12 25677776331 11123466677777776666554443 1 122333333322 0147789
Q ss_pred EEEECCCCCe--eeccCCCC----------CCceEEEcCeEEEEeCcEEEEecCCc
Q 019186 222 QVLDHMGLGW--TVEDYGWL----------QGPMAIVHDSVYLMSHGLIIKQHRDV 265 (345)
Q Consensus 222 ~~yd~~~~~W--~~~~~~~~----------~~~~~~~~~~l~~~~~~~i~~~d~~~ 265 (345)
+++|+.+++| +..+.... ...++...+++|.+-.+.+...||-.
T Consensus 176 ~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF~rGGi~vgnP~~ 231 (339)
T PF09910_consen 176 HCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAFVRGGIFVGNPYN 231 (339)
T ss_pred EEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEEEeccEEEeCCCC
Confidence 9999999999 33321111 55678888999999888888888863
No 109
>PTZ00421 coronin; Provisional
Probab=93.33 E-value=7.6 Score=36.96 Aligned_cols=62 Identities=11% Similarity=0.088 Sum_probs=37.0
Q ss_pred CeEEEEcCcCCCCCCCceEEEEeCCCCceE-eCCCCCccCCCceeE-EEECCEEEEEecCcceEEEEECCCCC
Q 019186 160 EKIVVAGGFTSCRKSISQAEMYDPEKDVWV-PIPDLHRTHNSACTG-VVIGGKVHVLHKGLSTVQVLDHMGLG 230 (345)
Q Consensus 160 ~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~~~~~~~~-~~~~~~iyv~gG~~~~i~~yd~~~~~ 230 (345)
+.+++.|+.++ .+.+||.++.+-. .+...... -.++ ...++.+++.|+....+..||+++++
T Consensus 138 ~~iLaSgs~Dg------tVrIWDl~tg~~~~~l~~h~~~---V~sla~spdG~lLatgs~Dg~IrIwD~rsg~ 201 (493)
T PTZ00421 138 MNVLASAGADM------VVNVWDVERGKAVEVIKCHSDQ---ITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT 201 (493)
T ss_pred CCEEEEEeCCC------EEEEEECCCCeEEEEEcCCCCc---eEEEEEECCCCEEEEecCCCEEEEEECCCCc
Confidence 35666666543 4889998876522 22111111 1122 23367777777777889999998765
No 110
>PLN00181 protein SPA1-RELATED; Provisional
Probab=93.25 E-value=11 Score=38.42 Aligned_cols=125 Identities=11% Similarity=0.035 Sum_probs=61.8
Q ss_pred CceEEEeCCCCCcccCCCCCCC-ceeeeeeEe--CCeEEEEcCcCCCCCCCceEEEEeCCCCce-EeCCCCCccCCCcee
Q 019186 128 NEVWSYDPVTRQWSPRASMLVP-RAMFACCAL--KEKIVVAGGFTSCRKSISQAEMYDPEKDVW-VPIPDLHRTHNSACT 203 (345)
Q Consensus 128 ~~~~~yd~~t~~W~~~~~~~~~-r~~~~~~~~--~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~~~~~~~ 203 (345)
..+.+||..+++-. ..+... ..-.+++.. ++.+++.|+.++ .+.+||..+..- ..+. .. ....+
T Consensus 555 g~v~lWd~~~~~~~--~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg------~v~iWd~~~~~~~~~~~---~~-~~v~~ 622 (793)
T PLN00181 555 GVVQVWDVARSQLV--TEMKEHEKRVWSIDYSSADPTLLASGSDDG------SVKLWSINQGVSIGTIK---TK-ANICC 622 (793)
T ss_pred CeEEEEECCCCeEE--EEecCCCCCEEEEEEcCCCCCEEEEEcCCC------EEEEEECCCCcEEEEEe---cC-CCeEE
Confidence 46888898765422 122111 112233332 466777777553 388899876532 2221 11 11111
Q ss_pred EEE--ECCEEEEEecCcceEEEEECCCCC--eeeccCCCC-CCceEEEcCeEEEEeC--cEEEEecCC
Q 019186 204 GVV--IGGKVHVLHKGLSTVQVLDHMGLG--WTVEDYGWL-QGPMAIVHDSVYLMSH--GLIIKQHRD 264 (345)
Q Consensus 204 ~~~--~~~~iyv~gG~~~~i~~yd~~~~~--W~~~~~~~~-~~~~~~~~~~l~~~~~--~~i~~~d~~ 264 (345)
+.. .++.++++|+....+..||..+.+ ...+..... ...+...++..++.++ +.+..+|..
T Consensus 623 v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~ 690 (793)
T PLN00181 623 VQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLS 690 (793)
T ss_pred EEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCC
Confidence 221 246777788777889999987643 222211111 1122223444444443 566666654
No 111
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=93.11 E-value=5.2 Score=34.40 Aligned_cols=216 Identities=12% Similarity=0.072 Sum_probs=119.6
Q ss_pred eEEEEeCCCCCEEeCCCCCccccccceeEEEE-ECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccCCCC
Q 019186 68 LWQLYDPLRDLWITLPVLPSKIRHLAHFGVVS-TAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPRASM 146 (345)
Q Consensus 68 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~ 146 (345)
.+=..||.+++=.+.+ ++.. ..-|.+++ -++..+|.-+. ..+-++|+++..-++.+-.
T Consensus 84 aiGhLdP~tGev~~yp-Lg~G---a~Phgiv~gpdg~~Witd~~-----------------~aI~R~dpkt~evt~f~lp 142 (353)
T COG4257 84 AIGHLDPATGEVETYP-LGSG---ASPHGIVVGPDGSAWITDTG-----------------LAIGRLDPKTLEVTRFPLP 142 (353)
T ss_pred cceecCCCCCceEEEe-cCCC---CCCceEEECCCCCeeEecCc-----------------ceeEEecCcccceEEeecc
Confidence 3446889998877664 4432 22333333 46667776432 2688899988876665421
Q ss_pred -CCCceeeeeeEe--CCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeEEEECCEEEEEecCcceEEE
Q 019186 147 -LVPRAMFACCAL--KEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQV 223 (345)
Q Consensus 147 -~~~r~~~~~~~~--~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~i~~ 223 (345)
..+-...-..++ .+.++..|-.... -..||.++.-+..+..... --..-++.-+|.+|+..-..+.|-.
T Consensus 143 ~~~a~~nlet~vfD~~G~lWFt~q~G~y-------GrLdPa~~~i~vfpaPqG~-gpyGi~atpdGsvwyaslagnaiar 214 (353)
T COG4257 143 LEHADANLETAVFDPWGNLWFTGQIGAY-------GRLDPARNVISVFPAPQGG-GPYGICATPDGSVWYASLAGNAIAR 214 (353)
T ss_pred cccCCCcccceeeCCCccEEEeeccccc-------eecCcccCceeeeccCCCC-CCcceEECCCCcEEEEeccccceEE
Confidence 122223333444 3556555542211 2456666554433333222 2222334568888887433466777
Q ss_pred EECCCCCeeeccCCCC-----CCceEEEcCeEEEEeC--cEEEEecCCc--eEEeccchhhcccceeEEEEECCeEEEEc
Q 019186 224 LDHMGLGWTVEDYGWL-----QGPMAIVHDSVYLMSH--GLIIKQHRDV--RKVVASASEFRRRIGFAMIGMGDDIYVIG 294 (345)
Q Consensus 224 yd~~~~~W~~~~~~~~-----~~~~~~~~~~l~~~~~--~~i~~~d~~~--W~~~~~~p~~~~r~~~~~~~~~~~l~i~G 294 (345)
.|+.+..=++++.... .-..+-.-+++.+... ..++.||+.. |++-+ +|...+|...--+.-.+++++.-
T Consensus 215 idp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eyp-LPgs~arpys~rVD~~grVW~se 293 (353)
T COG4257 215 IDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYP-LPGSKARPYSMRVDRHGRVWLSE 293 (353)
T ss_pred cccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeee-CCCCCCCcceeeeccCCcEEeec
Confidence 8887775555543222 1111223456666644 8999999987 88764 34344555443344456666631
Q ss_pred ceecCCCCcccccccCceeeeccCCCCCceeEc
Q 019186 295 GVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQV 327 (345)
Q Consensus 295 G~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~v 327 (345)
= ..+.+..||+++. +++.+
T Consensus 294 a------------~agai~rfdpeta--~ftv~ 312 (353)
T COG4257 294 A------------DAGAIGRFDPETA--RFTVL 312 (353)
T ss_pred c------------ccCceeecCcccc--eEEEe
Confidence 1 2247788999988 77665
No 112
>PRK13684 Ycf48-like protein; Provisional
Probab=92.76 E-value=7.1 Score=35.07 Aligned_cols=192 Identities=9% Similarity=0.054 Sum_probs=91.8
Q ss_pred CCCEEeCCCC-CccccccceeEEEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccCCCC-CCCceee
Q 019186 76 RDLWITLPVL-PSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPRASM-LVPRAMF 153 (345)
Q Consensus 76 ~~~W~~~~~~-~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~-~~~r~~~ 153 (345)
-.+|+..... +.. .....++...++..|+.|.. ..+++=+-.-.+|+++... ..+....
T Consensus 75 G~tW~~~~~~~~~~--~~~l~~v~~~~~~~~~~G~~-----------------g~i~~S~DgG~tW~~~~~~~~~~~~~~ 135 (334)
T PRK13684 75 GETWEERSLDLPEE--NFRLISISFKGDEGWIVGQP-----------------SLLLHTTDGGKNWTRIPLSEKLPGSPY 135 (334)
T ss_pred CCCceECccCCccc--ccceeeeEEcCCcEEEeCCC-----------------ceEEEECCCCCCCeEccCCcCCCCCce
Confidence 3589986432 211 12223344445566776532 2355444445689887532 1112222
Q ss_pred eeeEe-CCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeEEEECCEEEEEecCcceEEEE-ECCCCCe
Q 019186 154 ACCAL-KEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVL-DHMGLGW 231 (345)
Q Consensus 154 ~~~~~-~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~i~~y-d~~~~~W 231 (345)
.+..+ ++.+++.|.. ..+..=+-.-.+|+.+...... ....+....+..+++.|....++.- |....+|
T Consensus 136 ~i~~~~~~~~~~~g~~-------G~i~~S~DgG~tW~~~~~~~~g--~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW 206 (334)
T PRK13684 136 LITALGPGTAEMATNV-------GAIYRTTDGGKNWEALVEDAAG--VVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAW 206 (334)
T ss_pred EEEEECCCcceeeecc-------ceEEEECCCCCCceeCcCCCcc--eEEEEEECCCCeEEEEeCCceEEEEcCCCCCeE
Confidence 33333 3445555432 1244444455689987553322 2233333334444443344455443 3444679
Q ss_pred eeccCCCC--CCce-EEEcCeEEEEeCcEEEEe---cCC-ceEEeccchhhcccceeEEEEE-CCeEEEEcc
Q 019186 232 TVEDYGWL--QGPM-AIVHDSVYLMSHGLIIKQ---HRD-VRKVVASASEFRRRIGFAMIGM-GDDIYVIGG 295 (345)
Q Consensus 232 ~~~~~~~~--~~~~-~~~~~~l~~~~~~~i~~~---d~~-~W~~~~~~p~~~~r~~~~~~~~-~~~l~i~GG 295 (345)
+.+..... ...+ ...++.+++++..-...+ |.. +|+.+...........++++.. ++.++++|.
T Consensus 207 ~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~ 278 (334)
T PRK13684 207 TPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGG 278 (334)
T ss_pred EEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcC
Confidence 88754322 1222 234778888887433333 232 3997643210011122333333 667888775
No 113
>PRK05137 tolB translocation protein TolB; Provisional
Probab=92.48 E-value=9.3 Score=35.71 Aligned_cols=133 Identities=11% Similarity=-0.037 Sum_probs=68.3
Q ss_pred cCceEEEeCCCCCcccCCCCCCCceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeEEE
Q 019186 127 TNEVWSYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVV 206 (345)
Q Consensus 127 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~ 206 (345)
...++++|.....=+.+...... .......-+++-.++...... ...++++|+.+.+.+.+...+.. ... ....
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~~~-v~~p~wSpDG~~lay~s~~~g---~~~i~~~dl~~g~~~~l~~~~g~-~~~-~~~S 254 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGSSL-VLTPRFSPNRQEITYMSYANG---RPRVYLLDLETGQRELVGNFPGM-TFA-PRFS 254 (435)
T ss_pred ceEEEEECCCCCCcEEEecCCCC-eEeeEECCCCCEEEEEEecCC---CCEEEEEECCCCcEEEeecCCCc-ccC-cEEC
Confidence 56788888755432333221111 111111224443333222211 35799999999888777655443 222 2233
Q ss_pred ECC-EEEEEec--CcceEEEEECCCCCeeeccCCCC--CCceEEEcCe-EEEEeC----cEEEEecCCc
Q 019186 207 IGG-KVHVLHK--GLSTVQVLDHMGLGWTVEDYGWL--QGPMAIVHDS-VYLMSH----GLIIKQHRDV 265 (345)
Q Consensus 207 ~~~-~iyv~gG--~~~~i~~yd~~~~~W~~~~~~~~--~~~~~~~~~~-l~~~~~----~~i~~~d~~~ 265 (345)
-++ +|++... ....++.+|+.++.-..+..... ....-..+|+ |++... .+++.+|.+.
T Consensus 255 PDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g 323 (435)
T PRK05137 255 PDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG 323 (435)
T ss_pred CCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC
Confidence 345 4544432 34678889998887776654332 1122223444 443332 5788888765
No 114
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=92.28 E-value=6.3 Score=33.30 Aligned_cols=233 Identities=9% Similarity=0.022 Sum_probs=105.8
Q ss_pred CCeEEEEeCCCCCEEeCCCCCccccccceeEEEEE--CCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccC
Q 019186 66 ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVST--AGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPR 143 (345)
Q Consensus 66 ~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~ 143 (345)
...+.+||..+++=..+..... +..+..++.+ +|+-..-||.+ .++-++|...-.-.+.
T Consensus 60 ~qhvRlyD~~S~np~Pv~t~e~---h~kNVtaVgF~~dgrWMyTgseD----------------gt~kIWdlR~~~~qR~ 120 (311)
T KOG0315|consen 60 NQHVRLYDLNSNNPNPVATFEG---HTKNVTAVGFQCDGRWMYTGSED----------------GTVKIWDLRSLSCQRN 120 (311)
T ss_pred CCeeEEEEccCCCCCceeEEec---cCCceEEEEEeecCeEEEecCCC----------------ceEEEEeccCcccchh
Confidence 4578899998875221111111 1344444443 67777777753 2566777765332222
Q ss_pred CCCCCCceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCce-eEEEE-CCEEEEEecCcceE
Q 019186 144 ASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSAC-TGVVI-GGKVHVLHKGLSTV 221 (345)
Q Consensus 144 ~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~-~~~~~-~~~iyv~gG~~~~i 221 (345)
-..+.+.. +++..-+.--+|.|-. ...+.++|..++.... ..+|.. .... ++.+. +|+..+..-.....
T Consensus 121 ~~~~spVn--~vvlhpnQteLis~dq-----sg~irvWDl~~~~c~~-~liPe~-~~~i~sl~v~~dgsml~a~nnkG~c 191 (311)
T KOG0315|consen 121 YQHNSPVN--TVVLHPNQTELISGDQ-----SGNIRVWDLGENSCTH-ELIPED-DTSIQSLTVMPDGSMLAAANNKGNC 191 (311)
T ss_pred ccCCCCcc--eEEecCCcceEEeecC-----CCcEEEEEccCCcccc-ccCCCC-CcceeeEEEcCCCcEEEEecCCccE
Confidence 22222211 2222222222232221 2348999999987653 234433 2222 22222 44444333245566
Q ss_pred EEEECCCCCe----eeccCCCC--CCce---EEEcCeEEEEeC--cEEEEecCCceEEeccchhhcccceeEEEEECCeE
Q 019186 222 QVLDHMGLGW----TVEDYGWL--QGPM---AIVHDSVYLMSH--GLIIKQHRDVRKVVASASEFRRRIGFAMIGMGDDI 290 (345)
Q Consensus 222 ~~yd~~~~~W----~~~~~~~~--~~~~---~~~~~~l~~~~~--~~i~~~d~~~W~~~~~~p~~~~r~~~~~~~~~~~l 290 (345)
+++++-+.+- ..+...+. .+.. ...+++.....+ ..++.++.+..-+.+..-....|.-..++--.+.-
T Consensus 192 yvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~ 271 (311)
T KOG0315|consen 192 YVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGE 271 (311)
T ss_pred EEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCcc
Confidence 6766655432 11111111 1111 112444444443 56666666664232222222345444443333444
Q ss_pred EEEcceecCCCCcccccccCceeeeccCCCCCceeEcCCCCCcceeEEeeee
Q 019186 291 YVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGTILGCTQ 342 (345)
Q Consensus 291 ~i~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~v~~~~~~r~~~~~~~~ 342 (345)
|++-|.... -+..||+..+ +++...+..+-. +.|+.
T Consensus 272 YlvTassd~-----------~~rlW~~~~~----k~v~qy~gh~K~-~vc~~ 307 (311)
T KOG0315|consen 272 YLVTASSDH-----------TARLWDLSAG----KEVRQYQGHHKA-AVCVA 307 (311)
T ss_pred EEEecCCCC-----------ceeecccccC----ceeeecCCcccc-cEEEE
Confidence 454443322 4567888876 244444544444 34433
No 115
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=92.17 E-value=2.7 Score=37.44 Aligned_cols=131 Identities=14% Similarity=0.121 Sum_probs=78.0
Q ss_pred CeEEEEeCCCC-----CEEeCCCCCccccccceeEEEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCC-c
Q 019186 67 NLWQLYDPLRD-----LWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQ-W 140 (345)
Q Consensus 67 ~~~~~yd~~~~-----~W~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~-W 140 (345)
..+.+|+.... +++.+.....+ -.-.+++.++++|.+.-|. .+.+|+...++ +
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~---g~V~ai~~~~~~lv~~~g~------------------~l~v~~l~~~~~l 120 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVK---GPVTAICSFNGRLVVAVGN------------------KLYVYDLDNSKTL 120 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEES---S-EEEEEEETTEEEEEETT------------------EEEEEEEETTSSE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeec---CcceEhhhhCCEEEEeecC------------------EEEEEEccCcccc
Confidence 56889998885 55555444332 3455677789997766653 57788887777 7
Q ss_pred ccCCCCCCCceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeEEEE-CCEEEEEecCcc
Q 019186 141 SPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVI-GGKVHVLHKGLS 219 (345)
Q Consensus 141 ~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~-~~~iyv~gG~~~ 219 (345)
...+.+..+-...++.+.++.|++.--.. .-.+..|+.+..+-..++.-..+ +...++..+ ++..++++-...
T Consensus 121 ~~~~~~~~~~~i~sl~~~~~~I~vgD~~~-----sv~~~~~~~~~~~l~~va~d~~~-~~v~~~~~l~d~~~~i~~D~~g 194 (321)
T PF03178_consen 121 LKKAFYDSPFYITSLSVFKNYILVGDAMK-----SVSLLRYDEENNKLILVARDYQP-RWVTAAEFLVDEDTIIVGDKDG 194 (321)
T ss_dssp EEEEEE-BSSSEEEEEEETTEEEEEESSS-----SEEEEEEETTTE-EEEEEEESS--BEEEEEEEE-SSSEEEEEETTS
T ss_pred hhhheecceEEEEEEeccccEEEEEEccc-----CEEEEEEEccCCEEEEEEecCCC-ccEEEEEEecCCcEEEEEcCCC
Confidence 77766655555666777788776553322 22355678766666666554445 455555666 665444433445
Q ss_pred eEEEE
Q 019186 220 TVQVL 224 (345)
Q Consensus 220 ~i~~y 224 (345)
.+..+
T Consensus 195 nl~~l 199 (321)
T PF03178_consen 195 NLFVL 199 (321)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 55443
No 116
>PRK04792 tolB translocation protein TolB; Provisional
Probab=92.16 E-value=10 Score=35.58 Aligned_cols=137 Identities=10% Similarity=0.014 Sum_probs=73.5
Q ss_pred cCceEEEeCCCCCcccCCCCCCCceeeeeeEeCC-eEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeEE
Q 019186 127 TNEVWSYDPVTRQWSPRASMLVPRAMFACCALKE-KIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGV 205 (345)
Q Consensus 127 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~ 205 (345)
...++++|+.+++-+.+...+...... ...-++ .|++....+ ....++.+|.++.+.+.+...... . .....
T Consensus 241 ~~~L~~~dl~tg~~~~lt~~~g~~~~~-~wSPDG~~La~~~~~~----g~~~Iy~~dl~tg~~~~lt~~~~~-~-~~p~w 313 (448)
T PRK04792 241 KAEIFVQDIYTQVREKVTSFPGINGAP-RFSPDGKKLALVLSKD----GQPEIYVVDIATKALTRITRHRAI-D-TEPSW 313 (448)
T ss_pred CcEEEEEECCCCCeEEecCCCCCcCCe-eECCCCCEEEEEEeCC----CCeEEEEEECCCCCeEECccCCCC-c-cceEE
Confidence 357999999888766555443221111 112244 454443222 135789999999888776543221 1 11222
Q ss_pred EECC-EEEEEec--CcceEEEEECCCCCeeeccCCCC-C-CceEEEcC-eEEEEeC----cEEEEecCCc--eEEec
Q 019186 206 VIGG-KVHVLHK--GLSTVQVLDHMGLGWTVEDYGWL-Q-GPMAIVHD-SVYLMSH----GLIIKQHRDV--RKVVA 270 (345)
Q Consensus 206 ~~~~-~iyv~gG--~~~~i~~yd~~~~~W~~~~~~~~-~-~~~~~~~~-~l~~~~~----~~i~~~d~~~--W~~~~ 270 (345)
.-++ .|++... ....++.+|+.+++++.+..... . ......+| .|++.+. ..++.+|.++ .+.+.
T Consensus 314 SpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt 390 (448)
T PRK04792 314 HPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLT 390 (448)
T ss_pred CCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEcc
Confidence 3344 4554432 34578899999888877642111 1 11223355 4444433 4778888766 44443
No 117
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=91.98 E-value=8.3 Score=34.04 Aligned_cols=209 Identities=13% Similarity=0.157 Sum_probs=94.2
Q ss_pred CcEEEEEecCCCCeEEEEeCCCCCEEeCCCC-CccccccceeEEEE-ECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEE
Q 019186 55 ENLLCVCAFDPENLWQLYDPLRDLWITLPVL-PSKIRHLAHFGVVS-TAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWS 132 (345)
Q Consensus 55 ~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~-~~~~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~ 132 (345)
++..++.|.. .-+..-.-.-.+|++++.. +.+ -..+.+.. -++.++++|.. ..+++
T Consensus 71 ~~~g~ivG~~--g~ll~T~DgG~tW~~v~l~~~lp---gs~~~i~~l~~~~~~l~~~~-----------------G~iy~ 128 (302)
T PF14870_consen 71 GNEGWIVGEP--GLLLHTTDGGKTWERVPLSSKLP---GSPFGITALGDGSAELAGDR-----------------GAIYR 128 (302)
T ss_dssp TTEEEEEEET--TEEEEESSTTSS-EE----TT-S---S-EEEEEEEETTEEEEEETT-------------------EEE
T ss_pred CCceEEEcCC--ceEEEecCCCCCcEEeecCCCCC---CCeeEEEEcCCCcEEEEcCC-----------------CcEEE
Confidence 5567777642 2233333345689998522 111 22233333 46677777642 24666
Q ss_pred EeCCCCCcccCCCCCCCceeeeeeE-eCCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeEEEECCEE
Q 019186 133 YDPVTRQWSPRASMLVPRAMFACCA-LKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKV 211 (345)
Q Consensus 133 yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~i 211 (345)
=.-.-.+|+.+..-.. -.-..+.. -++++++++... +-....|+....|+........ |.......-++.|
T Consensus 129 T~DgG~tW~~~~~~~~-gs~~~~~r~~dG~~vavs~~G------~~~~s~~~G~~~w~~~~r~~~~-riq~~gf~~~~~l 200 (302)
T PF14870_consen 129 TTDGGKTWQAVVSETS-GSINDITRSSDGRYVAVSSRG------NFYSSWDPGQTTWQPHNRNSSR-RIQSMGFSPDGNL 200 (302)
T ss_dssp ESSTTSSEEEEE-S-----EEEEEE-TTS-EEEEETTS------SEEEEE-TT-SS-EEEE--SSS--EEEEEE-TTS-E
T ss_pred eCCCCCCeeEcccCCc-ceeEeEEECCCCcEEEEECcc------cEEEEecCCCccceEEccCccc-eehhceecCCCCE
Confidence 6566678987653222 11222232 366666665432 1245678888889876544333 5444445557888
Q ss_pred EEEecCcceEEEEE--CCCCCeeeccCCCC--C---CceEE-EcCeEEEEeCc--EEEEecCCc-eEEeccchhhcccce
Q 019186 212 HVLHKGLSTVQVLD--HMGLGWTVEDYGWL--Q---GPMAI-VHDSVYLMSHG--LIIKQHRDV-RKVVASASEFRRRIG 280 (345)
Q Consensus 212 yv~gG~~~~i~~yd--~~~~~W~~~~~~~~--~---~~~~~-~~~~l~~~~~~--~i~~~d~~~-W~~~~~~p~~~~r~~ 280 (345)
+++. .-..+..=+ .....|++...... . ..++. -++.+++.++. .++.-|... |++...... .+--.
T Consensus 201 w~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~DgGktW~~~~~~~~-~~~n~ 278 (302)
T PF14870_consen 201 WMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLVSTDGGKTWQKDRVGEN-VPSNL 278 (302)
T ss_dssp EEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEEESSTTSS-EE-GGGTT-SSS--
T ss_pred EEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEEEeCCCCccceECccccC-CCCce
Confidence 8875 334444444 34557877322221 1 22222 26789999883 444455544 999865431 22222
Q ss_pred eEEE-EECCeEEEEcc
Q 019186 281 FAMI-GMGDDIYVIGG 295 (345)
Q Consensus 281 ~~~~-~~~~~l~i~GG 295 (345)
+.++ .-+++-+++|-
T Consensus 279 ~~i~f~~~~~gf~lG~ 294 (302)
T PF14870_consen 279 YRIVFVNPDKGFVLGQ 294 (302)
T ss_dssp -EEEEEETTEEEEE-S
T ss_pred EEEEEcCCCceEEECC
Confidence 3333 34678888875
No 118
>PRK05137 tolB translocation protein TolB; Provisional
Probab=91.65 E-value=12 Score=35.06 Aligned_cols=145 Identities=10% Similarity=-0.013 Sum_probs=73.5
Q ss_pred CCeEEEEeCCCCCEEeCCCCCccccccceeEEEEECCE-EEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccCC
Q 019186 66 ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGK-LFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPRA 144 (345)
Q Consensus 66 ~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~-lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~ 144 (345)
...++++|+.+++.+.+...+.. ... ...+-+|+ |++..... ...++|++|..+++-+++.
T Consensus 225 ~~~i~~~dl~~g~~~~l~~~~g~---~~~-~~~SPDG~~la~~~~~~--------------g~~~Iy~~d~~~~~~~~Lt 286 (435)
T PRK05137 225 RPRVYLLDLETGQRELVGNFPGM---TFA-PRFSPDGRKVVMSLSQG--------------GNTDIYTMDLRSGTTTRLT 286 (435)
T ss_pred CCEEEEEECCCCcEEEeecCCCc---ccC-cEECCCCCEEEEEEecC--------------CCceEEEEECCCCceEEcc
Confidence 46889999999888777655432 111 12233454 44433221 2357999999888766665
Q ss_pred CCCCCceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeEEEECC-EEEEEec--CcceE
Q 019186 145 SMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGG-KVHVLHK--GLSTV 221 (345)
Q Consensus 145 ~~~~~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-~iyv~gG--~~~~i 221 (345)
..+.... .....-+++-.++..... ....++++|..+...+.+..... ........-++ .|++... ....+
T Consensus 287 ~~~~~~~-~~~~spDG~~i~f~s~~~---g~~~Iy~~d~~g~~~~~lt~~~~--~~~~~~~SpdG~~ia~~~~~~~~~~i 360 (435)
T PRK05137 287 DSPAIDT-SPSYSPDGSQIVFESDRS---GSPQLYVMNADGSNPRRISFGGG--RYSTPVWSPRGDLIAFTKQGGGQFSI 360 (435)
T ss_pred CCCCccC-ceeEcCCCCEEEEEECCC---CCCeEEEEECCCCCeEEeecCCC--cccCeEECCCCCEEEEEEcCCCceEE
Confidence 4332111 111122444333322111 13568899988777666543211 11112233344 4444331 23457
Q ss_pred EEEECCCCCeeec
Q 019186 222 QVLDHMGLGWTVE 234 (345)
Q Consensus 222 ~~yd~~~~~W~~~ 234 (345)
+.+|+.++..+.+
T Consensus 361 ~~~d~~~~~~~~l 373 (435)
T PRK05137 361 GVMKPDGSGERIL 373 (435)
T ss_pred EEEECCCCceEec
Confidence 7777765554443
No 119
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=91.25 E-value=11 Score=34.47 Aligned_cols=177 Identities=12% Similarity=0.137 Sum_probs=88.9
Q ss_pred CCeEEEEeCCCCCEEeCCCCCccccccceeEEEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCc-ccCC
Q 019186 66 ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQW-SPRA 144 (345)
Q Consensus 66 ~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W-~~~~ 144 (345)
.+.++++|-..+.=-++..+... -.-+++-..++.+|++.=. ...-+++.|+..-+= +.++
T Consensus 405 ~N~vYilDe~lnvvGkltGl~~g---ERIYAvRf~gdv~yiVTfr---------------qtDPlfviDlsNPenPkvlG 466 (603)
T COG4880 405 VNAVYILDENLNVVGKLTGLAPG---ERIYAVRFVGDVLYIVTFR---------------QTDPLFVIDLSNPENPKVLG 466 (603)
T ss_pred cceeEEEcCCCcEEEEEeccCCC---ceEEEEEEeCceEEEEEEe---------------ccCceEEEEcCCCCCCceeE
Confidence 46778888777655444444322 3345566778888888632 234578888765432 1222
Q ss_pred CCCCCceeeeeeEe-CCeEEEEcCcCCCCCCCceEEEEeCCC-------------CceEeCCCCCccCCCceeEEEECC-
Q 019186 145 SMLVPRAMFACCAL-KEKIVVAGGFTSCRKSISQAEMYDPEK-------------DVWVPIPDLHRTHNSACTGVVIGG- 209 (345)
Q Consensus 145 ~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~~~~~v~~yd~~~-------------~~W~~~~~~~~~~~~~~~~~~~~~- 209 (345)
.+..+-...=+.-+ .+.+.-+|-..+ --++..||... +-|+.+ ...+-++..|.
T Consensus 467 eLKIPGfS~YLHpigen~~lGvG~~~g----~vKiSLFdiSdl~~PkEv~~y~l~~~wspv-------f~dhHAFl~d~~ 535 (603)
T COG4880 467 ELKIPGFSEYLHPIGENRLLGVGAYQG----GVKISLFDISDLAAPKEVSNYTLSNAWSPV-------FYDHHAFLYDPE 535 (603)
T ss_pred EEecCCchhhccccCCCcEEEeecccC----CceEEEEeccCCCCchhhhheehhhhcchh-------hhccceeecCCc
Confidence 33222221112223 344444444332 23455666432 234432 12222344443
Q ss_pred -EEEEEecCcceEEEEECCCC-Ceeec-cCCCCCCceEEEcCeEEEEeCcEEEEecCCceEEeccc
Q 019186 210 -KVHVLHKGLSTVQVLDHMGL-GWTVE-DYGWLQGPMAIVHDSVYLMSHGLIIKQHRDVRKVVASA 272 (345)
Q Consensus 210 -~iyv~gG~~~~i~~yd~~~~-~W~~~-~~~~~~~~~~~~~~~l~~~~~~~i~~~d~~~W~~~~~~ 272 (345)
.|+.+.-..+. +.|-.+.+ +-..- ........+...++.+|++|+..++.+|.++|+.++++
T Consensus 536 ~~ifFlPay~~g-yif~iedg~kl~k~~e~k~na~RA~fi~dylY~vg~~ev~~ldenswe~Vge~ 600 (603)
T COG4880 536 AEIFFLPAYLGG-YIFFIEDGSKLRKRAERKLNADRAFFIKDYLYLVGGNEVWKLDENSWEVVGEA 600 (603)
T ss_pred ccEEEecccCcc-EEEEEecCceeeehhhhcccceeeEEecceEEEeccceeEEeccchHhhhhhe
Confidence 25444321111 12222222 11110 00001235566899999999999999999999988654
No 120
>PRK03629 tolB translocation protein TolB; Provisional
Probab=91.19 E-value=13 Score=34.72 Aligned_cols=147 Identities=10% Similarity=-0.032 Sum_probs=76.4
Q ss_pred CCeEEEEeCCCCCEEeCCCCCccccccceeEEEEECCE-EEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccCC
Q 019186 66 ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGK-LFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPRA 144 (345)
Q Consensus 66 ~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~-lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~ 144 (345)
...++++|..+++-+.+...+.. ... -..+-+|+ |++..... ...+++++|..+++.+++.
T Consensus 222 ~~~i~i~dl~~G~~~~l~~~~~~---~~~-~~~SPDG~~La~~~~~~--------------g~~~I~~~d~~tg~~~~lt 283 (429)
T PRK03629 222 RSALVIQTLANGAVRQVASFPRH---NGA-PAFSPDGSKLAFALSKT--------------GSLNLYVMDLASGQIRQVT 283 (429)
T ss_pred CcEEEEEECCCCCeEEccCCCCC---cCC-eEECCCCCEEEEEEcCC--------------CCcEEEEEECCCCCEEEcc
Confidence 45788888888877776654432 111 12223454 55443221 1346999999988777665
Q ss_pred CCCCCceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeEEEECCE-EEEEec--CcceE
Q 019186 145 SMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGK-VHVLHK--GLSTV 221 (345)
Q Consensus 145 ~~~~~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-iyv~gG--~~~~i 221 (345)
....... .....-+++.+++..... ....++.+|+.+..-+.+...... .......-+++ |+.... ....+
T Consensus 284 ~~~~~~~-~~~wSPDG~~I~f~s~~~---g~~~Iy~~d~~~g~~~~lt~~~~~--~~~~~~SpDG~~Ia~~~~~~g~~~I 357 (429)
T PRK03629 284 DGRSNNT-EPTWFPDSQNLAYTSDQA---GRPQVYKVNINGGAPQRITWEGSQ--NQDADVSSDGKFMVMVSSNGGQQHI 357 (429)
T ss_pred CCCCCcC-ceEECCCCCEEEEEeCCC---CCceEEEEECCCCCeEEeecCCCC--ccCEEECCCCCEEEEEEccCCCceE
Confidence 4322111 111122444333322211 134688889887766655322111 11122233444 444432 23468
Q ss_pred EEEECCCCCeeeccC
Q 019186 222 QVLDHMGLGWTVEDY 236 (345)
Q Consensus 222 ~~yd~~~~~W~~~~~ 236 (345)
+.+|+.++.++.+..
T Consensus 358 ~~~dl~~g~~~~Lt~ 372 (429)
T PRK03629 358 AKQDLATGGVQVLTD 372 (429)
T ss_pred EEEECCCCCeEEeCC
Confidence 889999888887753
No 121
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=91.15 E-value=12 Score=34.43 Aligned_cols=182 Identities=13% Similarity=-0.013 Sum_probs=91.9
Q ss_pred CCCeEEEEeCCCCCEEeCCCCCccccccceeEEEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccCC
Q 019186 65 PENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPRA 144 (345)
Q Consensus 65 ~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~ 144 (345)
....+++.|.....=+.+...... ......+-+++.+++..... ....++++|..+++-+.+.
T Consensus 168 ~~~~l~~~d~~g~~~~~l~~~~~~----~~~p~~Spdg~~la~~~~~~-------------~~~~i~v~d~~~g~~~~~~ 230 (417)
T TIGR02800 168 RRYELQVADYDGANPQTITRSREP----ILSPAWSPDGQKLAYVSFES-------------GKPEIYVQDLATGQREKVA 230 (417)
T ss_pred CcceEEEEcCCCCCCEEeecCCCc----eecccCCCCCCEEEEEEcCC-------------CCcEEEEEECCCCCEEEee
Confidence 355788888765443333322211 11112233555444443321 1357999999888665554
Q ss_pred CCCCCceeeeeeEeCC-eEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeEEEECC-EEEEEec--Ccce
Q 019186 145 SMLVPRAMFACCALKE-KIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGG-KVHVLHK--GLST 220 (345)
Q Consensus 145 ~~~~~r~~~~~~~~~~-~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-~iyv~gG--~~~~ 220 (345)
......... ...-++ .|++.....+ ...++.+|..+...+.+...... .... ...-++ .|++... ....
T Consensus 231 ~~~~~~~~~-~~spDg~~l~~~~~~~~----~~~i~~~d~~~~~~~~l~~~~~~-~~~~-~~s~dg~~l~~~s~~~g~~~ 303 (417)
T TIGR02800 231 SFPGMNGAP-AFSPDGSKLAVSLSKDG----NPDIYVMDLDGKQLTRLTNGPGI-DTEP-SWSPDGKSIAFTSDRGGSPQ 303 (417)
T ss_pred cCCCCccce-EECCCCCEEEEEECCCC----CccEEEEECCCCCEEECCCCCCC-CCCE-EECCCCCEEEEEECCCCCce
Confidence 433222111 112244 4554433221 35689999998877766443322 1111 122344 4544432 2347
Q ss_pred EEEEECCCCCeeeccCCCC-C-CceEEEcCeEEEEeC-----cEEEEecCCc--eEEec
Q 019186 221 VQVLDHMGLGWTVEDYGWL-Q-GPMAIVHDSVYLMSH-----GLIIKQHRDV--RKVVA 270 (345)
Q Consensus 221 i~~yd~~~~~W~~~~~~~~-~-~~~~~~~~~l~~~~~-----~~i~~~d~~~--W~~~~ 270 (345)
++.+|..+.+++.+..... . ......+|+.+++.. ..++.+|.++ ++.+.
T Consensus 304 iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~ 362 (417)
T TIGR02800 304 IYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLT 362 (417)
T ss_pred EEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEcc
Confidence 8899998888876643222 1 122223555544433 3789999876 44443
No 122
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=91.04 E-value=12 Score=34.08 Aligned_cols=198 Identities=21% Similarity=0.178 Sum_probs=109.1
Q ss_pred EEECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCC--cccCCCCCCCceeeeeeEeCCeEEEEcCcCCCCCCC
Q 019186 98 VSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQ--WSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSI 175 (345)
Q Consensus 98 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~~~ 175 (345)
+..++++|+... ...++.+|+.+.+ |+.................+++||+-....
T Consensus 65 ~~~dg~v~~~~~-----------------~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g------ 121 (370)
T COG1520 65 ADGDGTVYVGTR-----------------DGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDG------ 121 (370)
T ss_pred EeeCCeEEEecC-----------------CCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccc------
Confidence 667889999722 1258889999887 876543211111222233378876654322
Q ss_pred ceEEEEeCCCC--ceEeCCCCCccCCCceeEEEECCEEEEEecCcceEEEEECCCC--CeeeccCC--CC--CCceEEEc
Q 019186 176 SQAEMYDPEKD--VWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGL--GWTVEDYG--WL--QGPMAIVH 247 (345)
Q Consensus 176 ~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~i~~yd~~~~--~W~~~~~~--~~--~~~~~~~~ 247 (345)
.++.||..+. .|+.-..-. . ......+..++.+|+.. ....++++|..++ .|+.-... .. .......+
T Consensus 122 -~~y~ld~~~G~~~W~~~~~~~-~-~~~~~~v~~~~~v~~~s-~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~ 197 (370)
T COG1520 122 -KLYALDASTGTLVWSRNVGGS-P-YYASPPVVGDGTVYVGT-DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIAS 197 (370)
T ss_pred -eEEEEECCCCcEEEEEecCCC-e-EEecCcEEcCcEEEEec-CCCeEEEEEccCCcEEEEEecCCccccccccCceeec
Confidence 6889998654 587432221 2 33444566677787764 3567889988865 68743221 11 23333667
Q ss_pred CeEEEEeC---cEEEEecCCc----eEEeccchhhcccceeEEEEECCeEEEEcceecCCCCcccccccCceeeeccCCC
Q 019186 248 DSVYLMSH---GLIIKQHRDV----RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE 320 (345)
Q Consensus 248 ~~l~~~~~---~~i~~~d~~~----W~~~~~~p~~~~r~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~yd~~~~ 320 (345)
+.+|+-.. +.++.+|+++ |+.-...+.......-......+.||+-++..... ....+.++|..+.
T Consensus 198 ~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~-------~~g~~~~l~~~~G 270 (370)
T COG1520 198 GTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGS-------YGGKLLCLDADTG 270 (370)
T ss_pred ceEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEe-------cCCeEEEEEcCCC
Confidence 77777655 2799999866 88643333111100001122344555555521110 1124677787777
Q ss_pred CCceeEcCC
Q 019186 321 RPTWRQVSP 329 (345)
Q Consensus 321 ~~~W~~v~~ 329 (345)
++.|+.=.+
T Consensus 271 ~~~W~~~~~ 279 (370)
T COG1520 271 ELIWSFPAG 279 (370)
T ss_pred ceEEEEecc
Confidence 677876543
No 123
>PLN00181 protein SPA1-RELATED; Provisional
Probab=91.00 E-value=20 Score=36.52 Aligned_cols=168 Identities=10% Similarity=0.012 Sum_probs=80.0
Q ss_pred CCeEEEEeCCCCCEEeCCCCCccccccceeEEEEE--CCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccC
Q 019186 66 ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVST--AGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPR 143 (345)
Q Consensus 66 ~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~ 143 (345)
...+.++|..+++. +..+... ...-.+++.. ++.+++.|+. ...+.+||..+.+- +
T Consensus 554 Dg~v~lWd~~~~~~--~~~~~~H--~~~V~~l~~~p~~~~~L~Sgs~----------------Dg~v~iWd~~~~~~--~ 611 (793)
T PLN00181 554 EGVVQVWDVARSQL--VTEMKEH--EKRVWSIDYSSADPTLLASGSD----------------DGSVKLWSINQGVS--I 611 (793)
T ss_pred CCeEEEEECCCCeE--EEEecCC--CCCEEEEEEcCCCCCEEEEEcC----------------CCEEEEEECCCCcE--E
Confidence 34667777766532 2222111 1222344443 4567777764 24688888876532 1
Q ss_pred CCCCCCceeeeeeE--eCCeEEEEcCcCCCCCCCceEEEEeCCCCc--eEeCCCCCccCCCceeEEEECCEEEEEecCcc
Q 019186 144 ASMLVPRAMFACCA--LKEKIVVAGGFTSCRKSISQAEMYDPEKDV--WVPIPDLHRTHNSACTGVVIGGKVHVLHKGLS 219 (345)
Q Consensus 144 ~~~~~~r~~~~~~~--~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~ 219 (345)
..+.......++.. -++..++.|+.+ ..+.+||..+.. ...+.. .. ..-..+...++..++.++.-+
T Consensus 612 ~~~~~~~~v~~v~~~~~~g~~latgs~d------g~I~iwD~~~~~~~~~~~~~--h~-~~V~~v~f~~~~~lvs~s~D~ 682 (793)
T PLN00181 612 GTIKTKANICCVQFPSESGRSLAFGSAD------HKVYYYDLRNPKLPLCTMIG--HS-KTVSYVRFVDSSTLVSSSTDN 682 (793)
T ss_pred EEEecCCCeEEEEEeCCCCCEEEEEeCC------CeEEEEECCCCCccceEecC--CC-CCEEEEEEeCCCEEEEEECCC
Confidence 11111111112222 246677777654 358999987643 222211 11 111223334666666776667
Q ss_pred eEEEEECCCC----CeeeccCCCC-----CCceEEEcCeEEEEeC--cEEEEecCC
Q 019186 220 TVQVLDHMGL----GWTVEDYGWL-----QGPMAIVHDSVYLMSH--GLIIKQHRD 264 (345)
Q Consensus 220 ~i~~yd~~~~----~W~~~~~~~~-----~~~~~~~~~~l~~~~~--~~i~~~d~~ 264 (345)
.+..+|+... .|..+..... .......++.+++.++ +.+..|+..
T Consensus 683 ~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 683 TLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred EEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence 7888988643 2322211110 1111223455555554 677777754
No 124
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=90.93 E-value=2.7 Score=31.78 Aligned_cols=58 Identities=9% Similarity=0.013 Sum_probs=41.9
Q ss_pred EeCCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCC--CccCCCceeEEEECCEEEEEec
Q 019186 157 ALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDL--HRTHNSACTGVVIGGKVHVLHK 216 (345)
Q Consensus 157 ~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~--~~~~~~~~~~~~~~~~iyv~gG 216 (345)
.+||.+|.+.... ......+..||.++++|+.+..+ +.........+.++|+|-++.-
T Consensus 3 cinGvly~~a~~~--~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~ 62 (129)
T PF08268_consen 3 CINGVLYWLAWSE--DSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSY 62 (129)
T ss_pred EECcEEEeEEEEC--CCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEe
Confidence 4688888887652 23367899999999999977553 2223556677889999888753
No 125
>smart00284 OLF Olfactomedin-like domains.
Probab=90.66 E-value=10 Score=32.51 Aligned_cols=185 Identities=14% Similarity=0.096 Sum_probs=97.9
Q ss_pred CcEEEEEecC--CCCeEEEEe----CCCCCEEeCCCCCccccccceeEEEEECCEEEEEcCCCCCCCCCCCCCCCCcCcC
Q 019186 55 ENLLCVCAFD--PENLWQLYD----PLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATN 128 (345)
Q Consensus 55 ~~~l~v~gg~--~~~~~~~yd----~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~ 128 (345)
.+++|+..+. ..+.++.|. ...++..+.-.+|.+ -.+-+.++.+|.+|.--. .+.
T Consensus 34 ~~~~wv~~~~~~~~~~v~ey~~~~~f~~~~~~~~~~Lp~~---~~GtG~VVYngslYY~~~----------------~s~ 94 (255)
T smart00284 34 KSLYWYMPLNTRVLRSVREYSSMSDFQMGKNPTDHPLPHA---GQGTGVVVYNGSLYFNKF----------------NSH 94 (255)
T ss_pred CceEEEEccccCCCcEEEEecCHHHHhccCCceEEECCCc---cccccEEEECceEEEEec----------------CCc
Confidence 4678887653 244566663 333344333334443 455667888999988543 246
Q ss_pred ceEEEeCCCCCcccCCCCCCC----c--------eeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCC----ceEeCC
Q 019186 129 EVWSYDPVTRQWSPRASMLVP----R--------AMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKD----VWVPIP 192 (345)
Q Consensus 129 ~~~~yd~~t~~W~~~~~~~~~----r--------~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~----~W~~~~ 192 (345)
.+.+||+.+++-.....+|.+ + ...-.++-.+-|.+|=..... ...-.+...||.+- .|..
T Consensus 95 ~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~-~g~ivvSkLnp~tL~ve~tW~T-- 171 (255)
T smart00284 95 DICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQN-AGKIVISKLNPATLTIENTWIT-- 171 (255)
T ss_pred cEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCC-CCCEEEEeeCcccceEEEEEEc--
Confidence 799999999986433333322 1 112233333445555221111 11223455666653 5765
Q ss_pred CCCccCCCceeEEEECCEEEEEec----CcceEEEEECCCCCeeeccCCCC----CCceEEE---cCeEEEEeCcEEEEe
Q 019186 193 DLHRTHNSACTGVVIGGKVHVLHK----GLSTVQVLDHMGLGWTVEDYGWL----QGPMAIV---HDSVYLMSHGLIIKQ 261 (345)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~iyv~gG----~~~~i~~yd~~~~~W~~~~~~~~----~~~~~~~---~~~l~~~~~~~i~~~ 261 (345)
..+.. . ...++.+=|.||++-. .....+.||+.+++=..+.-.+. ..++.-. +.+||+.+.+.+..|
T Consensus 172 ~~~k~-s-a~naFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i~f~n~y~~~s~l~YNP~d~~LY~wdng~~l~Y 249 (255)
T smart00284 172 TYNKR-S-ASNAFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIPFENMYEYISMLDYNPNDRKLYAWNNGHLVHY 249 (255)
T ss_pred CCCcc-c-ccccEEEeeEEEEEccCCCCCcEEEEEEECCCCccceeeeeeccccccceeceeCCCCCeEEEEeCCeEEEE
Confidence 33333 2 2334455578888853 34456789998875332211111 2222222 567777777777666
Q ss_pred cC
Q 019186 262 HR 263 (345)
Q Consensus 262 d~ 263 (345)
+.
T Consensus 250 ~v 251 (255)
T smart00284 250 DI 251 (255)
T ss_pred EE
Confidence 64
No 126
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=90.36 E-value=26 Score=36.90 Aligned_cols=231 Identities=13% Similarity=0.034 Sum_probs=118.4
Q ss_pred CcEEEEEecCCCCeEEEEeCCCCCEEeCCCCCcc--------ccc-cceeEEEEE--CCEEEEEcCCCCCCCCCCCCCCC
Q 019186 55 ENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSK--------IRH-LAHFGVVST--AGKLFVLGGGSDAVDPLTGDQDG 123 (345)
Q Consensus 55 ~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~~~~--------~~~-~~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~ 123 (345)
++.+||.. ...+.+..+|+..+.-..+...... ... ..=+++++. ++.|||.-..
T Consensus 579 ~g~lyVaD-s~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~------------- 644 (1057)
T PLN02919 579 NNRLFISD-SNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE------------- 644 (1057)
T ss_pred CCeEEEEE-CCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC-------------
Confidence 56677664 3456888899865533333221100 000 011345554 4668987643
Q ss_pred CcCcCceEEEeCCCCCcccCCCC-------CC--------CceeeeeeEe--CCeEEEEcCcCCCCCCCceEEEEeCCCC
Q 019186 124 SFATNEVWSYDPVTRQWSPRASM-------LV--------PRAMFACCAL--KEKIVVAGGFTSCRKSISQAEMYDPEKD 186 (345)
Q Consensus 124 ~~~~~~~~~yd~~t~~W~~~~~~-------~~--------~r~~~~~~~~--~~~iyv~gG~~~~~~~~~~v~~yd~~~~ 186 (345)
...+.++|+.++.-+.+..- .. -..-..+++. ++.+|+.... .+.+.+||+.+.
T Consensus 645 ---n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~------~~~I~v~d~~~g 715 (1057)
T PLN02919 645 ---NHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG------QHQIWEYNISDG 715 (1057)
T ss_pred ---CceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC------CCeEEEEECCCC
Confidence 24577788876654332110 00 0111233433 6788887532 245888888776
Q ss_pred ceEeCCCC----------Cc-cCCCceeEEEE---CCEEEEEecCcceEEEEECCCCCeeeccC----------------
Q 019186 187 VWVPIPDL----------HR-THNSACTGVVI---GGKVHVLHKGLSTVQVLDHMGLGWTVEDY---------------- 236 (345)
Q Consensus 187 ~W~~~~~~----------~~-~~~~~~~~~~~---~~~iyv~gG~~~~i~~yd~~~~~W~~~~~---------------- 236 (345)
....+..- .. ........+.+ ++.||+.....+.|.+||+.++.-..+..
T Consensus 716 ~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~d 795 (1057)
T PLN02919 716 VTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHD 795 (1057)
T ss_pred eEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCC
Confidence 55432110 00 00111222222 34599998777899999998765332110
Q ss_pred -------CCCCCceE-EEcCeEEEEeC--cEEEEecCCc--eEEeccchh----------hcccceeEEEE-ECCeEEEE
Q 019186 237 -------GWLQGPMA-IVHDSVYLMSH--GLIIKQHRDV--RKVVASASE----------FRRRIGFAMIG-MGDDIYVI 293 (345)
Q Consensus 237 -------~~~~~~~~-~~~~~l~~~~~--~~i~~~d~~~--W~~~~~~p~----------~~~r~~~~~~~-~~~~l~i~ 293 (345)
...+..++ ..+|.+|+.+. ..|..+|+++ ...+..... ..-...++++. -++++||.
T Consensus 796 G~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa 875 (1057)
T PLN02919 796 GVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA 875 (1057)
T ss_pred CchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE
Confidence 00022222 24678999886 7899999876 333321110 00012234443 36788887
Q ss_pred cceecCCCCcccccccCceeeeccCCC
Q 019186 294 GGVIGPDRWNWDIKPMSDVDVLTVGAE 320 (345)
Q Consensus 294 GG~~~~~~~~~~~~~~~~v~~yd~~~~ 320 (345)
-..+ +.|.++|+.+.
T Consensus 876 Dt~N------------n~Irvid~~~~ 890 (1057)
T PLN02919 876 DTNN------------SLIRYLDLNKG 890 (1057)
T ss_pred ECCC------------CEEEEEECCCC
Confidence 4322 35778888765
No 127
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=90.23 E-value=14 Score=33.38 Aligned_cols=97 Identities=11% Similarity=0.040 Sum_probs=55.5
Q ss_pred ceEEEeCCCCCcccCCCCCCCceeeeeeE--eCCeEEEEcCcCCCCCCCceEEEEeCCC--CceEeCCCCCccCCCceeE
Q 019186 129 EVWSYDPVTRQWSPRASMLVPRAMFACCA--LKEKIVVAGGFTSCRKSISQAEMYDPEK--DVWVPIPDLHRTHNSACTG 204 (345)
Q Consensus 129 ~~~~yd~~t~~W~~~~~~~~~r~~~~~~~--~~~~iyv~gG~~~~~~~~~~v~~yd~~~--~~W~~~~~~~~~~~~~~~~ 204 (345)
.++.||..+++++.+......-.-.-++. -++.||+..... .....+..|+... .+.+.+...+.. ....+.
T Consensus 16 ~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~---~~~g~v~~~~i~~~~g~L~~~~~~~~~-g~~p~~ 91 (345)
T PF10282_consen 16 YVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGS---GDSGGVSSYRIDPDTGTLTLLNSVPSG-GSSPCH 91 (345)
T ss_dssp EEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTS---STTTEEEEEEEETTTTEEEEEEEEEES-SSCEEE
T ss_pred EEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccc---cCCCCEEEEEECCCcceeEEeeeeccC-CCCcEE
Confidence 45556778888877654322211122233 467889986543 1234566766555 577766555533 333444
Q ss_pred EEE---CCEEEEEecCcceEEEEECCCC
Q 019186 205 VVI---GGKVHVLHKGLSTVQVLDHMGL 229 (345)
Q Consensus 205 ~~~---~~~iyv~gG~~~~i~~yd~~~~ 229 (345)
+.+ +..||+..-....+..|++..+
T Consensus 92 i~~~~~g~~l~vany~~g~v~v~~l~~~ 119 (345)
T PF10282_consen 92 IAVDPDGRFLYVANYGGGSVSVFPLDDD 119 (345)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred EEEecCCCEEEEEEccCCeEEEEEccCC
Confidence 444 4567776544677888888764
No 128
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=89.94 E-value=12 Score=32.46 Aligned_cols=126 Identities=12% Similarity=0.022 Sum_probs=68.0
Q ss_pred CceEEEeCCCCCcccCCCCCCCceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeEEE-
Q 019186 128 NEVWSYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVV- 206 (345)
Q Consensus 128 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~- 206 (345)
..+-.||..++.-+ ..+.....-..++..+..-.+.||.++ .+-.||..+..=..+..--.+ ..++.
T Consensus 35 gslrlYdv~~~~l~--~~~~~~~plL~c~F~d~~~~~~G~~dg------~vr~~Dln~~~~~~igth~~~----i~ci~~ 102 (323)
T KOG1036|consen 35 GSLRLYDVPANSLK--LKFKHGAPLLDCAFADESTIVTGGLDG------QVRRYDLNTGNEDQIGTHDEG----IRCIEY 102 (323)
T ss_pred CcEEEEeccchhhh--hheecCCceeeeeccCCceEEEeccCc------eEEEEEecCCcceeeccCCCc----eEEEEe
Confidence 45777888776211 112222223345555666667777664 489999988775555443333 11221
Q ss_pred -ECCEEEEEecCcceEEEEECCCCCeeeccCCC-CCCceEEEcCeEEE-EeCcEEEEecCCc
Q 019186 207 -IGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGW-LQGPMAIVHDSVYL-MSHGLIIKQHRDV 265 (345)
Q Consensus 207 -~~~~iyv~gG~~~~i~~yd~~~~~W~~~~~~~-~~~~~~~~~~~l~~-~~~~~i~~~d~~~ 265 (345)
......|.||.-..|...|+.+..=...-... ....+.+.++.|.+ ..+..+..||..+
T Consensus 103 ~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn 164 (323)
T KOG1036|consen 103 SYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRN 164 (323)
T ss_pred eccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEccc
Confidence 22344567777788888888752111110000 12333444555555 2338889998765
No 129
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=89.86 E-value=2.8 Score=31.69 Aligned_cols=81 Identities=11% Similarity=0.116 Sum_probs=51.3
Q ss_pred EEECCEEEEEec----CcceEEEEECCCCCeeeccCCCCCCceEEEcCeEEEEeCcEEEEecCCceEEeccchhhcccce
Q 019186 205 VVIGGKVHVLHK----GLSTVQVLDHMGLGWTVEDYGWLQGPMAIVHDSVYLMSHGLIIKQHRDVRKVVASASEFRRRIG 280 (345)
Q Consensus 205 ~~~~~~iyv~gG----~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~d~~~W~~~~~~p~~~~r~~ 280 (345)
+.+||.+|.... ....|.+||.++++|+.+..+ .. .......
T Consensus 2 icinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P---------------------------------~~-~~~~~~~ 47 (129)
T PF08268_consen 2 ICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLP---------------------------------ED-PYSSDCS 47 (129)
T ss_pred EEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEee---------------------------------ee-eccccCc
Confidence 567888887754 357788999999999876421 00 1134455
Q ss_pred eEEEEECCeEEEEcceecCCCCcccccccCceeeec-cCCCCCceeEc
Q 019186 281 FAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLT-VGAERPTWRQV 327 (345)
Q Consensus 281 ~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~yd-~~~~~~~W~~v 327 (345)
..++.++|+|-++.-..... ...-++|+.+ -..+ +|.+.
T Consensus 48 ~~L~~~~G~L~~v~~~~~~~------~~~~~iWvLeD~~k~--~Wsk~ 87 (129)
T PF08268_consen 48 STLIEYKGKLALVSYNDQGE------PDSIDIWVLEDYEKQ--EWSKK 87 (129)
T ss_pred cEEEEeCCeEEEEEecCCCC------cceEEEEEeeccccc--eEEEE
Confidence 67888899988875543321 1223777775 3444 89876
No 130
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=89.81 E-value=5.4 Score=40.09 Aligned_cols=122 Identities=14% Similarity=0.131 Sum_probs=65.9
Q ss_pred eeEEEECCEEEEEecCcceEEEEECCCC--CeeeccCCCCCC--------------------------ceEEEcCeEEEE
Q 019186 202 CTGVVIGGKVHVLHKGLSTVQVLDHMGL--GWTVEDYGWLQG--------------------------PMAIVHDSVYLM 253 (345)
Q Consensus 202 ~~~~~~~~~iyv~gG~~~~i~~yd~~~~--~W~~~~~~~~~~--------------------------~~~~~~~~l~~~ 253 (345)
.+-+.+++.||+.. ..+.++++|.+++ .|+.-....... ..+..+++||+-
T Consensus 188 ~TPlvvgg~lYv~t-~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~ 266 (764)
T TIGR03074 188 ATPLKVGDTLYLCT-PHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILP 266 (764)
T ss_pred cCCEEECCEEEEEC-CCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEe
Confidence 34467899999987 3677999998866 587543322100 011234466665
Q ss_pred eC-cEEEEecCCc----eEEe--------ccchhhcc---cceeEEEEECCeEEEEcceecCCCCcccccccCceeeecc
Q 019186 254 SH-GLIIKQHRDV----RKVV--------ASASEFRR---RIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTV 317 (345)
Q Consensus 254 ~~-~~i~~~d~~~----W~~~--------~~~p~~~~---r~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~yd~ 317 (345)
.. +.++.+|.++ |+-- ..++.... .....-++.++.||+ |+......... .....|..||.
T Consensus 267 T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIv-G~~v~d~~~~~--~~~G~I~A~Da 343 (764)
T TIGR03074 267 TSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVI-GGRVADNYSTD--EPSGVIRAFDV 343 (764)
T ss_pred cCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEE-Eeccccccccc--CCCcEEEEEEC
Confidence 44 6777777765 5421 11111001 122333455776555 54321110000 12346889999
Q ss_pred CCCCCceeEc
Q 019186 318 GAERPTWRQV 327 (345)
Q Consensus 318 ~~~~~~W~~v 327 (345)
+++++.|+.=
T Consensus 344 ~TGkl~W~~~ 353 (764)
T TIGR03074 344 NTGALVWAWD 353 (764)
T ss_pred CCCcEeeEEe
Confidence 9988888753
No 131
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=89.38 E-value=16 Score=33.01 Aligned_cols=60 Identities=8% Similarity=0.087 Sum_probs=41.1
Q ss_pred cCeEEEEe-C----------cEEEEecCCceEEeccchhhcccceeEEEEE-CC--eEEEEcceecCCCCcccccccCce
Q 019186 247 HDSVYLMS-H----------GLIIKQHRDVRKVVASASEFRRRIGFAMIGM-GD--DIYVIGGVIGPDRWNWDIKPMSDV 312 (345)
Q Consensus 247 ~~~l~~~~-~----------~~i~~~d~~~W~~~~~~p~~~~r~~~~~~~~-~~--~l~i~GG~~~~~~~~~~~~~~~~v 312 (345)
++++|+.. + +.+..+|.++++.+..++ ..+..++++.- ++ .+|+.-+. .++|
T Consensus 259 g~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~--vG~~~~~iavS~Dgkp~lyvtn~~------------s~~V 324 (352)
T TIGR02658 259 RDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE--LGHEIDSINVSQDAKPLLYALSTG------------DKTL 324 (352)
T ss_pred CCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe--CCCceeeEEECCCCCeEEEEeCCC------------CCcE
Confidence 67899842 1 689999999999998887 34444555544 44 45555431 2478
Q ss_pred eeeccCCC
Q 019186 313 DVLTVGAE 320 (345)
Q Consensus 313 ~~yd~~~~ 320 (345)
.++|..+.
T Consensus 325 sViD~~t~ 332 (352)
T TIGR02658 325 YIFDAETG 332 (352)
T ss_pred EEEECcCC
Confidence 89999876
No 132
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=88.99 E-value=14 Score=33.00 Aligned_cols=184 Identities=14% Similarity=0.141 Sum_probs=84.5
Q ss_pred CcCceEEEeCCCCCcccCCCCC-------CCceeeeeeEeCCeEEEE-cCcCCCCCCCceEEEEeCCCCceEeCCCCCcc
Q 019186 126 ATNEVWSYDPVTRQWSPRASML-------VPRAMFACCALKEKIVVA-GGFTSCRKSISQAEMYDPEKDVWVPIPDLHRT 197 (345)
Q Consensus 126 ~~~~~~~yd~~t~~W~~~~~~~-------~~r~~~~~~~~~~~iyv~-gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~ 197 (345)
....+-+.|...++....-+.| .....+.+..-+|.+..+ -+..+. ........||++++-...-+.....
T Consensus 116 Pa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk-~~~~~t~~F~~~~dp~f~~~~~~~~ 194 (342)
T PF06433_consen 116 PATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGK-EAQKSTKVFDPDDDPLFEHPAYSRD 194 (342)
T ss_dssp SSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSS-EEEEEEEESSTTTS-B-S--EEETT
T ss_pred CCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCC-EeEeeccccCCCCcccccccceECC
Confidence 4678999999998864321211 111122222224444333 121221 1133446777776543322211111
Q ss_pred CCCceeEEEECCEEEEE--ecCc-ceEEEEECCC-----CCeeeccCCCCCCceEE--EcCeEEEEeC-----------c
Q 019186 198 HNSACTGVVIGGKVHVL--HKGL-STVQVLDHMG-----LGWTVEDYGWLQGPMAI--VHDSVYLMSH-----------G 256 (345)
Q Consensus 198 ~~~~~~~~~~~~~iyv~--gG~~-~~i~~yd~~~-----~~W~~~~~~~~~~~~~~--~~~~l~~~~~-----------~ 256 (345)
....--+.++|++|-+ +|.. .-...+.+.+ ..|..-. ...++. -.++||++-. .
T Consensus 195 -~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG----~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgt 269 (342)
T PF06433_consen 195 -GGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGG----WQLIAYHAASGRLYVLMHQGGEGSHKDPGT 269 (342)
T ss_dssp -TTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-S----SS-EEEETTTTEEEEEEEE--TT-TTS-EE
T ss_pred -CCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcc----eeeeeeccccCeEEEEecCCCCCCccCCce
Confidence 1112224667777774 3311 1122222221 2344321 112222 3678888753 7
Q ss_pred EEEEecCCceEEeccchhhcccceeEEEEE-CCe--EEEEcceecCCCCcccccccCceeeeccCCCCCceeEcCCC
Q 019186 257 LIIKQHRDVRKVVASASEFRRRIGFAMIGM-GDD--IYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPM 330 (345)
Q Consensus 257 ~i~~~d~~~W~~~~~~p~~~~r~~~~~~~~-~~~--l~i~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~v~~~ 330 (345)
+|+.||.++-+++..++. ....-++.+- +++ ||..-+ +. .++.+||..+++ .=+++.++
T Consensus 270 eVWv~D~~t~krv~Ri~l--~~~~~Si~Vsqd~~P~L~~~~~--~~----------~~l~v~D~~tGk-~~~~~~~l 331 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPL--EHPIDSIAVSQDDKPLLYALSA--GD----------GTLDVYDAATGK-LVRSIEQL 331 (342)
T ss_dssp EEEEEETTTTEEEEEEEE--EEEESEEEEESSSS-EEEEEET--TT----------TEEEEEETTT---EEEEE---
T ss_pred EEEEEECCCCeEEEEEeC--CCccceEEEccCCCcEEEEEcC--CC----------CeEEEEeCcCCc-EEeehhcc
Confidence 999999999888877763 2222234433 443 444422 11 278999998873 33344444
No 133
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.97 E-value=8.4 Score=31.75 Aligned_cols=160 Identities=8% Similarity=-0.037 Sum_probs=89.2
Q ss_pred eeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCc--eEeCCCCCccCCCceeEEEECCEEEEEecCcceEEEEECCCCC
Q 019186 153 FACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDV--WVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLG 230 (345)
Q Consensus 153 ~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~i~~yd~~~~~ 230 (345)
.++...++.++.--|.-+ .+.+.++|..+.+ |++ +++.+...+-+.+..++.+|.+.=.....+.||..+
T Consensus 49 QGL~~~~g~i~esTG~yg----~S~ir~~~L~~gq~~~s~--~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t-- 120 (262)
T COG3823 49 QGLEYLDGHILESTGLYG----FSKIRVSDLTTGQEIFSE--KLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADT-- 120 (262)
T ss_pred cceeeeCCEEEEeccccc----cceeEEEeccCceEEEEe--ecCCccccccceeeccceEEEEEeccceeEEEChHH--
Confidence 355566888888877654 3568999998654 553 222231445566788999999863334455666543
Q ss_pred eeeccCCCC---CCceEEEcCeEEEEeC-cEEEEecCCceEEeccchh---hc-ccceeEEEEECCeEEEEcceecCCCC
Q 019186 231 WTVEDYGWL---QGPMAIVHDSVYLMSH-GLIIKQHRDVRKVVASASE---FR-RRIGFAMIGMGDDIYVIGGVIGPDRW 302 (345)
Q Consensus 231 W~~~~~~~~---~~~~~~~~~~l~~~~~-~~i~~~d~~~W~~~~~~p~---~~-~r~~~~~~~~~~~l~i~GG~~~~~~~ 302 (345)
...+...+. .-.++.-+..|.+-+| ..+..-||++......+.. .. -+.-.-+-.++|.+|.- .
T Consensus 121 ~~~lg~~~y~GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyAN-----V--- 192 (262)
T COG3823 121 LEELGRFSYEGEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYAN-----V--- 192 (262)
T ss_pred hhhhcccccCCcceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEe-----e---
Confidence 222211111 2234445667777777 5566668877433322210 00 00111123344555431 1
Q ss_pred cccccccCceeeeccCCCC-CceeEcCCCCC
Q 019186 303 NWDIKPMSDVDVLTVGAER-PTWRQVSPMTR 332 (345)
Q Consensus 303 ~~~~~~~~~v~~yd~~~~~-~~W~~v~~~~~ 332 (345)
...+++-+.||++++ ..|..+++++.
T Consensus 193 ----w~t~~I~rI~p~sGrV~~widlS~L~~ 219 (262)
T COG3823 193 ----WQTTRIARIDPDSGRVVAWIDLSGLLK 219 (262)
T ss_pred ----eeecceEEEcCCCCcEEEEEEccCCch
Confidence 234578888998885 56999988753
No 134
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=88.65 E-value=16 Score=33.47 Aligned_cols=133 Identities=6% Similarity=0.026 Sum_probs=68.9
Q ss_pred eeeeeEe-CCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeEE-EECCEEEEEec-CcceEEEEECCC
Q 019186 152 MFACCAL-KEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGV-VIGGKVHVLHK-GLSTVQVLDHMG 228 (345)
Q Consensus 152 ~~~~~~~-~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~-~~~~~iyv~gG-~~~~i~~yd~~~ 228 (345)
..+++.. +|.|+..|-.++ .+-+||..+.. .++.+|.. -.....+ .-+|..|++-+ .-.++.++|++.
T Consensus 350 ~ts~~fHpDgLifgtgt~d~------~vkiwdlks~~--~~a~Fpgh-t~~vk~i~FsENGY~Lat~add~~V~lwDLRK 420 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPDG------VVKIWDLKSQT--NVAKFPGH-TGPVKAISFSENGYWLATAADDGSVKLWDLRK 420 (506)
T ss_pred eEEeeEcCCceEEeccCCCc------eEEEEEcCCcc--ccccCCCC-CCceeEEEeccCceEEEEEecCCeEEEEEehh
Confidence 3444444 566666665443 48889988877 66677665 3223333 33444444443 445599999976
Q ss_pred CC-eeeccCCCC--CCce-EEEcCeEEEEeCc--EEEEecCCc--eEEeccchhhcccceeEEEEEC-CeEEEEcc
Q 019186 229 LG-WTVEDYGWL--QGPM-AIVHDSVYLMSHG--LIIKQHRDV--RKVVASASEFRRRIGFAMIGMG-DDIYVIGG 295 (345)
Q Consensus 229 ~~-W~~~~~~~~--~~~~-~~~~~~l~~~~~~--~i~~~d~~~--W~~~~~~p~~~~r~~~~~~~~~-~~l~i~GG 295 (345)
.+ +..+...-. ..++ .-..|....+++. .||.++..+ |+++...+... .-...+.++ ...|++.|
T Consensus 421 l~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~s--g~st~v~Fg~~aq~l~s~ 494 (506)
T KOG0289|consen 421 LKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHS--GLSTGVRFGEHAQYLAST 494 (506)
T ss_pred hcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcc--cccceeeecccceEEeec
Confidence 54 222211111 1111 1124555556664 455555444 99998887322 123344453 34555444
No 135
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=87.85 E-value=40 Score=35.63 Aligned_cols=148 Identities=13% Similarity=0.061 Sum_probs=82.2
Q ss_pred EEEEE--CCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccCCC----------CC---CCceeeeeeEe--
Q 019186 96 GVVST--AGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPRAS----------ML---VPRAMFACCAL-- 158 (345)
Q Consensus 96 ~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~----------~~---~~r~~~~~~~~-- 158 (345)
.+++. ++.+||.... .+.+++||+.++....+.. .. ....-.++++.
T Consensus 687 gVa~dp~~g~LyVad~~----------------~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspd 750 (1057)
T PLN02919 687 DVCFEPVNEKVYIAMAG----------------QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPD 750 (1057)
T ss_pred EEEEecCCCeEEEEECC----------------CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCC
Confidence 34444 5788887543 3568888887765432210 00 00111233333
Q ss_pred CCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCC--C--CCc--------------cCCCceeEE--EECCEEEEEecCc
Q 019186 159 KEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIP--D--LHR--------------THNSACTGV--VIGGKVHVLHKGL 218 (345)
Q Consensus 159 ~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~--~--~~~--------------~~~~~~~~~--~~~~~iyv~gG~~ 218 (345)
++.||+.... .+.+.+||++++....+. . .+. ........+ .-+|.+||.....
T Consensus 751 G~~LYVADs~------n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N 824 (1057)
T PLN02919 751 LKELYIADSE------SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN 824 (1057)
T ss_pred CCEEEEEECC------CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC
Confidence 3458887543 256999998876533211 0 000 000111222 3367899998778
Q ss_pred ceEEEEECCCCCeeeccCCC---------------CCCceEE-EcCeEEEEeC--cEEEEecCCc
Q 019186 219 STVQVLDHMGLGWTVEDYGW---------------LQGPMAI-VHDSVYLMSH--GLIIKQHRDV 265 (345)
Q Consensus 219 ~~i~~yd~~~~~W~~~~~~~---------------~~~~~~~-~~~~l~~~~~--~~i~~~d~~~ 265 (345)
+.|..||+.++....+.... .+..+++ -+|++|+.+. ..|..+|.++
T Consensus 825 ~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 825 HKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred CEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 88999999888765442210 1223333 3688999986 6788888765
No 136
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=87.35 E-value=22 Score=32.77 Aligned_cols=186 Identities=11% Similarity=0.013 Sum_probs=90.6
Q ss_pred eeEEEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccCCCCCCCceee--eeeEe-CCeEEEEcCcCC
Q 019186 94 HFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPRASMLVPRAMF--ACCAL-KEKIVVAGGFTS 170 (345)
Q Consensus 94 ~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~--~~~~~-~~~iyv~gG~~~ 170 (345)
.++++..+..-|+++|. ....+|++...++.--.+ -.+++.. ++... |+..++-||.++
T Consensus 84 v~al~s~n~G~~l~ag~---------------i~g~lYlWelssG~LL~v---~~aHYQ~ITcL~fs~dgs~iiTgskDg 145 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGT---------------ISGNLYLWELSSGILLNV---LSAHYQSITCLKFSDDGSHIITGSKDG 145 (476)
T ss_pred eeeeecCCCceEEEeec---------------ccCcEEEEEeccccHHHH---HHhhccceeEEEEeCCCcEEEecCCCc
Confidence 45677777777777774 245689999988752221 1222322 22222 666777777653
Q ss_pred CCCCCceEEEEeCC------CCceEeCCCCCccCCCceeEEE---------ECCEEEEEecCcceEEEEECCCCCeeecc
Q 019186 171 CRKSISQAEMYDPE------KDVWVPIPDLHRTHNSACTGVV---------IGGKVHVLHKGLSTVQVLDHMGLGWTVED 235 (345)
Q Consensus 171 ~~~~~~~v~~yd~~------~~~W~~~~~~~~~~~~~~~~~~---------~~~~iyv~gG~~~~i~~yd~~~~~W~~~~ 235 (345)
. |.+|+.. .+. .+.+ ......|+... .+.++|-.+ .-.++-+||+..+.--.--
T Consensus 146 ~------V~vW~l~~lv~a~~~~--~~~p--~~~f~~HtlsITDl~ig~Gg~~~rl~TaS-~D~t~k~wdlS~g~LLlti 214 (476)
T KOG0646|consen 146 A------VLVWLLTDLVSADNDH--SVKP--LHIFSDHTLSITDLQIGSGGTNARLYTAS-EDRTIKLWDLSLGVLLLTI 214 (476)
T ss_pred c------EEEEEEEeecccccCC--Cccc--eeeeccCcceeEEEEecCCCccceEEEec-CCceEEEEEeccceeeEEE
Confidence 2 5554422 111 1111 11011111111 234566555 4567778888877543222
Q ss_pred CCCCCCceEEE--cCeEEEEeC--cEEEEecCCceE----------------Eeccchhhcc--cceeEEEEECCeEEEE
Q 019186 236 YGWLQGPMAIV--HDSVYLMSH--GLIIKQHRDVRK----------------VVASASEFRR--RIGFAMIGMGDDIYVI 293 (345)
Q Consensus 236 ~~~~~~~~~~~--~~~l~~~~~--~~i~~~d~~~W~----------------~~~~~p~~~~--r~~~~~~~~~~~l~i~ 293 (345)
..+....++.+ .++.+.+|. +.|+..+...|. ++..+..... -..+-....++.+++.
T Consensus 215 ~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlS 294 (476)
T KOG0646|consen 215 TFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLS 294 (476)
T ss_pred ecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEe
Confidence 22222222222 334444444 555555443322 1111110011 2223334568999999
Q ss_pred cceecCCCCcccccccCceeeeccCCC
Q 019186 294 GGVIGPDRWNWDIKPMSDVDVLTVGAE 320 (345)
Q Consensus 294 GG~~~~~~~~~~~~~~~~v~~yd~~~~ 320 (345)
|+.++. |-+||+.+.
T Consensus 295 Gd~dg~------------VcvWdi~S~ 309 (476)
T KOG0646|consen 295 GDEDGK------------VCVWDIYSK 309 (476)
T ss_pred eCCCCC------------EEEEecchH
Confidence 997764 677888665
No 137
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=87.25 E-value=25 Score=32.69 Aligned_cols=130 Identities=11% Similarity=0.030 Sum_probs=75.2
Q ss_pred CcCceEEEeCCCCCcccCCCCCCCceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeEE
Q 019186 126 ATNEVWSYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGV 205 (345)
Q Consensus 126 ~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~ 205 (345)
..-.+|+=.-..++.+++-+|+... .+-+++++++|.+.-.++.+ .++.-|..-+.-++-.++..- .+..+
T Consensus 204 trGklWis~d~g~tFeK~vdl~~~v--S~PmIV~~RvYFlsD~eG~G----nlYSvdldGkDlrrHTnFtdY---Y~R~~ 274 (668)
T COG4946 204 TRGKLWISSDGGKTFEKFVDLDGNV--SSPMIVGERVYFLSDHEGVG----NLYSVDLDGKDLRRHTNFTDY---YPRNA 274 (668)
T ss_pred ccceEEEEecCCcceeeeeecCCCc--CCceEEcceEEEEecccCcc----ceEEeccCCchhhhcCCchhc---ccccc
Confidence 4556777666666788877777543 35577899999997665443 356656555444333333221 22233
Q ss_pred EECCEEEEEecCcceEEEEECCCCCeeeccCC-CC---------------CCceEEEcCeEEEE-eCcEEEEecCCc
Q 019186 206 VIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYG-WL---------------QGPMAIVHDSVYLM-SHGLIIKQHRDV 265 (345)
Q Consensus 206 ~~~~~iyv~gG~~~~i~~yd~~~~~W~~~~~~-~~---------------~~~~~~~~~~l~~~-~~~~i~~~d~~~ 265 (345)
.-+|+=.|+- ...+|+.|||.+++-+.+.-. +. .--.+.++|.++.+ +.++.+.+++..
T Consensus 275 nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~ 350 (668)
T COG4946 275 NSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWD 350 (668)
T ss_pred CCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCC
Confidence 4456544553 345899999998887766433 11 11133445544444 447777777654
No 138
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=87.08 E-value=27 Score=32.83 Aligned_cols=119 Identities=15% Similarity=0.079 Sum_probs=69.1
Q ss_pred CCceeeeeeEe--CCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCC-----ccC-CCceeEEEECCEEEEEecCcc
Q 019186 148 VPRAMFACCAL--KEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLH-----RTH-NSACTGVVIGGKVHVLHKGLS 219 (345)
Q Consensus 148 ~~r~~~~~~~~--~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~-----~~~-~~~~~~~~~~~~iyv~gG~~~ 219 (345)
..|.-.+.|.+ ++++ +.+|+.+. ++..+|. ..|..-+.+. .++ -...-.+..+|++.+.-|.-.
T Consensus 315 g~Rv~~tsC~~nrdg~~-iAagc~DG-----SIQ~W~~--~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~ 386 (641)
T KOG0772|consen 315 GKRVPVTSCAWNRDGKL-IAAGCLDG-----SIQIWDK--GSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDD 386 (641)
T ss_pred CcccCceeeecCCCcch-hhhcccCC-----ceeeeec--CCcccccceEeeeccCCCCceeEEEeccccchhhhccCCC
Confidence 45666666666 5666 44555432 3666664 4444333321 110 112222355788777766666
Q ss_pred eEEEEECCC-----CCeeeccCCCC-CCceEEEcCeEEEEeC--------cEEEEecCCceEEeccchh
Q 019186 220 TVQVLDHMG-----LGWTVEDYGWL-QGPMAIVHDSVYLMSH--------GLIIKQHRDVRKVVASASE 274 (345)
Q Consensus 220 ~i~~yd~~~-----~~W~~~~~~~~-~~~~~~~~~~l~~~~~--------~~i~~~d~~~W~~~~~~p~ 274 (345)
++-.+|+++ +.|+-++.... .-.+...+++|++.|. +.++-||..+...+..++.
T Consensus 387 tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i 455 (641)
T KOG0772|consen 387 TLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI 455 (641)
T ss_pred ceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecC
Confidence 677777754 24665555444 2233346778888876 6788999988888877763
No 139
>PRK04922 tolB translocation protein TolB; Provisional
Probab=86.92 E-value=27 Score=32.64 Aligned_cols=137 Identities=13% Similarity=0.132 Sum_probs=71.9
Q ss_pred CceEEEEeCCCCceEeCCCCCccCCCceeEEEECC-EEEEEec--CcceEEEEECCCCCeeeccCCCC--CCceEEEcCe
Q 019186 175 ISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGG-KVHVLHK--GLSTVQVLDHMGLGWTVEDYGWL--QGPMAIVHDS 249 (345)
Q Consensus 175 ~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-~iyv~gG--~~~~i~~yd~~~~~W~~~~~~~~--~~~~~~~~~~ 249 (345)
...++++|..+++-+.+...+.. .. .....-++ +|++... ....++.+|+.+++-+.+..... ....-..+|+
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~g~-~~-~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~ 304 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFRGI-NG-APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGK 304 (433)
T ss_pred CcEEEEEECCCCCEEEeccCCCC-cc-CceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCC
Confidence 35689999988887766655433 21 12233344 4554421 34579999998887766644322 1112223454
Q ss_pred -EEEEeC----cEEEEecCCc--eEEeccchhhcccceeEE-EEECC-eEEEEcceecCCCCcccccccCceeeeccCCC
Q 019186 250 -VYLMSH----GLIIKQHRDV--RKVVASASEFRRRIGFAM-IGMGD-DIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE 320 (345)
Q Consensus 250 -l~~~~~----~~i~~~d~~~--W~~~~~~p~~~~r~~~~~-~~~~~-~l~i~GG~~~~~~~~~~~~~~~~v~~yd~~~~ 320 (345)
|++... .+++.++.++ .+.+..- ....... ..-++ .|++..+ .+. ...+++||+.++
T Consensus 305 ~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~----g~~~~~~~~SpDG~~Ia~~~~-~~~---------~~~I~v~d~~~g 370 (433)
T PRK04922 305 SIYFTSDRGGRPQIYRVAASGGSAERLTFQ----GNYNARASVSPDGKKIAMVHG-SGG---------QYRIAVMDLSTG 370 (433)
T ss_pred EEEEEECCCCCceEEEEECCCCCeEEeecC----CCCccCEEECCCCCEEEEEEC-CCC---------ceeEEEEECCCC
Confidence 444432 4688888654 5555321 1111111 22244 4444433 211 126888888777
Q ss_pred CCceeEcCC
Q 019186 321 RPTWRQVSP 329 (345)
Q Consensus 321 ~~~W~~v~~ 329 (345)
+.+.+..
T Consensus 371 --~~~~Lt~ 377 (433)
T PRK04922 371 --SVRTLTP 377 (433)
T ss_pred --CeEECCC
Confidence 6666643
No 140
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=86.59 E-value=24 Score=32.55 Aligned_cols=156 Identities=15% Similarity=0.088 Sum_probs=86.7
Q ss_pred CcEEEEEecCC-C-CeEEEEeCCCC-----CEEeCCCCCccccccceeEEEEECCEEEEEcCCCCCCCCCCCCCCCCcCc
Q 019186 55 ENLLCVCAFDP-E-NLWQLYDPLRD-----LWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFAT 127 (345)
Q Consensus 55 ~~~l~v~gg~~-~-~~~~~yd~~~~-----~W~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~ 127 (345)
+..+++..... . +.++..|...+ .|..+.+-.. -....+...++.+|+...... ..
T Consensus 238 ~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~----~~~~~v~~~~~~~yi~Tn~~a-------------~~ 300 (414)
T PF02897_consen 238 GRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRED----GVEYYVDHHGDRLYILTNDDA-------------PN 300 (414)
T ss_dssp SSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSS----S-EEEEEEETTEEEEEE-TT--------------TT
T ss_pred ccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCC----ceEEEEEccCCEEEEeeCCCC-------------CC
Confidence 45555544332 3 67888888875 7777654211 223334455889999886322 24
Q ss_pred CceEEEeCCCCC---cc-cCCCCCCCceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCC-CCceEeCCCCCccCCCce
Q 019186 128 NEVWSYDPVTRQ---WS-PRASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPE-KDVWVPIPDLHRTHNSAC 202 (345)
Q Consensus 128 ~~~~~yd~~t~~---W~-~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~-~~~W~~~~~~~~~~~~~~ 202 (345)
..+..+++.+.. |. .+.+-.....-..+.+.++.|++.-=. +....+.+||.. +..-..++ +|.. ...
T Consensus 301 ~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~----~~~~~l~v~~~~~~~~~~~~~-~p~~--g~v 373 (414)
T PF02897_consen 301 GRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRE----NGSSRLRVYDLDDGKESREIP-LPEA--GSV 373 (414)
T ss_dssp -EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEE----TTEEEEEEEETT-TEEEEEEE-SSSS--SEE
T ss_pred cEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEE----CCccEEEEEECCCCcEEeeec-CCcc--eEE
Confidence 578888888776 55 333322223445556678888776432 225679999998 33333332 2222 111
Q ss_pred eEEEE---CCEEEE-Eec--CcceEEEEECCCCCeeec
Q 019186 203 TGVVI---GGKVHV-LHK--GLSTVQVLDHMGLGWTVE 234 (345)
Q Consensus 203 ~~~~~---~~~iyv-~gG--~~~~i~~yd~~~~~W~~~ 234 (345)
..... .+.+++ +.+ ....++.||+.+++.+.+
T Consensus 374 ~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 374 SGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLL 411 (414)
T ss_dssp EEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEE
T ss_pred eccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEE
Confidence 22211 334444 344 567899999999987765
No 141
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=85.85 E-value=22 Score=30.55 Aligned_cols=170 Identities=10% Similarity=-0.013 Sum_probs=81.3
Q ss_pred cCceEEEeCCCCCcccCCCCCCCceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCC-----CccCCCc
Q 019186 127 TNEVWSYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDL-----HRTHNSA 201 (345)
Q Consensus 127 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~-----~~~~~~~ 201 (345)
-+++-.+|..+++-...-..+.+..... ...++.+.++.- +........+.+||.....=...+.- +.+ -..
T Consensus 73 D~t~kLWDv~tGk~la~~k~~~~Vk~~~-F~~~gn~~l~~t-D~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~-~sk 149 (327)
T KOG0643|consen 73 DQTAKLWDVETGKQLATWKTNSPVKRVD-FSFGGNLILAST-DKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTP-DSK 149 (327)
T ss_pred cceeEEEEcCCCcEEEEeecCCeeEEEe-eccCCcEEEEEe-hhhcCcceEEEEEEccCChhhhcccCceEEecCC-ccc
Confidence 4567889999887322222222211111 122344444421 22223456788999875442222111 111 112
Q ss_pred eeEEE--ECCEEEEEecCcceEEEEECCCCCeeeccCCCC---CCce-EEEcCeEEEEeC--cEEEEecCCceEEeccch
Q 019186 202 CTGVV--IGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWL---QGPM-AIVHDSVYLMSH--GLIIKQHRDVRKVVASAS 273 (345)
Q Consensus 202 ~~~~~--~~~~iyv~gG~~~~i~~yd~~~~~W~~~~~~~~---~~~~-~~~~~~l~~~~~--~~i~~~d~~~W~~~~~~p 273 (345)
...+. .-++-.+.|+....|-.||.++++=..-...-. -..+ -.-+...|+.+. ..-..+|..+.+.++...
T Consensus 150 it~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~ 229 (327)
T KOG0643|consen 150 ITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT 229 (327)
T ss_pred eeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee
Confidence 22222 234555677678889999999863322111000 0111 112445555555 444445554433332222
Q ss_pred hhcccceeEEEEECCeEEEEcceecC
Q 019186 274 EFRRRIGFAMIGMGDDIYVIGGVIGP 299 (345)
Q Consensus 274 ~~~~r~~~~~~~~~~~l~i~GG~~~~ 299 (345)
...+....++.-+.++|++-||....
T Consensus 230 te~PvN~aaisP~~d~VilgGGqeA~ 255 (327)
T KOG0643|consen 230 TERPVNTAAISPLLDHVILGGGQEAM 255 (327)
T ss_pred ecccccceecccccceEEecCCceee
Confidence 12233445566678899999996654
No 142
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=85.53 E-value=29 Score=31.81 Aligned_cols=120 Identities=10% Similarity=0.061 Sum_probs=67.2
Q ss_pred cceeEEEEEC-CEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccCCCCCCCceeeeeeEe--CCeEEEEcCc
Q 019186 92 LAHFGVVSTA-GKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPRASMLVPRAMFACCAL--KEKIVVAGGF 168 (345)
Q Consensus 92 ~~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~gG~ 168 (345)
....+++.+. |.|+..|-. ...+-+||..... .++.+|..-.--....+ ||+-.+.+ .
T Consensus 348 v~~ts~~fHpDgLifgtgt~----------------d~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~-a 408 (506)
T KOG0289|consen 348 VEYTSAAFHPDGLIFGTGTP----------------DGVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATA-A 408 (506)
T ss_pred ceeEEeeEcCCceEEeccCC----------------CceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEE-e
Confidence 4566777775 445555432 3467789988776 55555542222222333 44443333 3
Q ss_pred CCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeEEEE--CCEEEEEecCcceEEEEECCCCCeeeccCC
Q 019186 169 TSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVI--GGKVHVLHKGLSTVQVLDHMGLGWTVEDYG 237 (345)
Q Consensus 169 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~--~~~iyv~gG~~~~i~~yd~~~~~W~~~~~~ 237 (345)
++ .+|..||..+.. .+..++..-........+ .|...+++|..-.++.|+-++.+|+.+...
T Consensus 409 dd-----~~V~lwDLRKl~--n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~ 472 (506)
T KOG0289|consen 409 DD-----GSVKLWDLRKLK--NFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKEL 472 (506)
T ss_pred cC-----CeEEEEEehhhc--ccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehh
Confidence 32 238899988765 222222221112333334 356666777667788888889999998644
No 143
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=85.04 E-value=34 Score=32.07 Aligned_cols=85 Identities=9% Similarity=-0.044 Sum_probs=49.1
Q ss_pred EEEEeCCCC----ceEeCCCCCccCCCceeEEEECCEEEEEecCcceEEEEECCCCCeeec-cCCCCCCceEE-EcCeEE
Q 019186 178 AEMYDPEKD----VWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVE-DYGWLQGPMAI-VHDSVY 251 (345)
Q Consensus 178 v~~yd~~~~----~W~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~i~~yd~~~~~W~~~-~~~~~~~~~~~-~~~~l~ 251 (345)
|..||.... .|.+.-.-|.. +.+....+..|++.-|.-..|..||....+-... ....+..+++. -+|.+.
T Consensus 189 VtlwDv~g~sp~~~~~~~HsAP~~---gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L 265 (673)
T KOG4378|consen 189 VTLWDVQGMSPIFHASEAHSAPCR---GICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYL 265 (673)
T ss_pred EEEEeccCCCcccchhhhccCCcC---cceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEE
Confidence 566665443 35544333333 3333455778888777888899999986654322 11111122222 356666
Q ss_pred EEeC--cEEEEecCCc
Q 019186 252 LMSH--GLIIKQHRDV 265 (345)
Q Consensus 252 ~~~~--~~i~~~d~~~ 265 (345)
+.|. +.++.||...
T Consensus 266 ~aG~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 266 CAGNSKGELIAYDMRS 281 (673)
T ss_pred EeecCCceEEEEeccc
Confidence 6666 8899998654
No 144
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=84.30 E-value=32 Score=31.17 Aligned_cols=121 Identities=13% Similarity=-0.038 Sum_probs=67.3
Q ss_pred CCcEEEEEecCC---CCeEEEEeCCCCCEEeCCCCCccccccceeEEEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCce
Q 019186 54 SENLLCVCAFDP---ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEV 130 (345)
Q Consensus 54 ~~~~l~v~gg~~---~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~ 130 (345)
....+|+.-... .+++.++|..+.+ .+...+.. .+.+..+.-.+..||+.-.+.... ........+
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~--v~g~i~~G--~~P~~~~spDg~~lyva~~~~~R~-------~~G~~~d~V 79 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGR--VLGMTDGG--FLPNPVVASDGSFFAHASTVYSRI-------ARGKRTDYV 79 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCE--EEEEEEcc--CCCceeECCCCCEEEEEecccccc-------ccCCCCCEE
Confidence 356788886531 3789999998864 33333332 133333222345699988743222 122246789
Q ss_pred EEEeCCCCCccc-CCCCCCCce-----eeeeeE-eCC-eEEEEcCcCCCCCCCceEEEEeCCCCceEe
Q 019186 131 WSYDPVTRQWSP-RASMLVPRA-----MFACCA-LKE-KIVVAGGFTSCRKSISQAEMYDPEKDVWVP 190 (345)
Q Consensus 131 ~~yd~~t~~W~~-~~~~~~~r~-----~~~~~~-~~~-~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~ 190 (345)
.+||+.|.+-.. ++..+.+|. ....++ -+| .+|+.-- ...+.+.+.|.++.+-..
T Consensus 80 ~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~-----~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 80 EVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQF-----SPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred EEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecC-----CCCCEEEEEECCCCcEEE
Confidence 999999987542 332223231 112222 244 5666631 124679999999887653
No 145
>PRK02889 tolB translocation protein TolB; Provisional
Probab=83.42 E-value=39 Score=31.50 Aligned_cols=145 Identities=9% Similarity=-0.030 Sum_probs=73.2
Q ss_pred CCeEEEEeCCCCCEEeCCCCCccccccceeEEEEECC-EEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccCC
Q 019186 66 ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAG-KLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPRA 144 (345)
Q Consensus 66 ~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~ 144 (345)
...++++|..+++=..+...+.. ......+-++ +|++..... ...++|.+|..++..+++.
T Consensus 219 ~~~I~~~dl~~g~~~~l~~~~g~----~~~~~~SPDG~~la~~~~~~--------------g~~~Iy~~d~~~~~~~~lt 280 (427)
T PRK02889 219 KPVVYVHDLATGRRRVVANFKGS----NSAPAWSPDGRTLAVALSRD--------------GNSQIYTVNADGSGLRRLT 280 (427)
T ss_pred CcEEEEEECCCCCEEEeecCCCC----ccceEECCCCCEEEEEEccC--------------CCceEEEEECCCCCcEECC
Confidence 45789999988876665544321 1112222344 454433321 2357999999877765554
Q ss_pred CCCCCceeeeeeEeCCe-EEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeEEEECCE-EEEEec--Ccce
Q 019186 145 SMLVPRAMFACCALKEK-IVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGK-VHVLHK--GLST 220 (345)
Q Consensus 145 ~~~~~r~~~~~~~~~~~-iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-iyv~gG--~~~~ 220 (345)
.... ........-+++ |+...... ....++.+|..+...+.+..- .. ........-+|+ |+.... ....
T Consensus 281 ~~~~-~~~~~~wSpDG~~l~f~s~~~----g~~~Iy~~~~~~g~~~~lt~~-g~-~~~~~~~SpDG~~Ia~~s~~~g~~~ 353 (427)
T PRK02889 281 QSSG-IDTEPFFSPDGRSIYFTSDRG----GAPQIYRMPASGGAAQRVTFT-GS-YNTSPRISPDGKLLAYISRVGGAFK 353 (427)
T ss_pred CCCC-CCcCeEEcCCCCEEEEEecCC----CCcEEEEEECCCCceEEEecC-CC-CcCceEECCCCCEEEEEEccCCcEE
Confidence 3221 111111222454 44332211 134678888777766655321 11 111122333444 444332 2246
Q ss_pred EEEEECCCCCeeecc
Q 019186 221 VQVLDHMGLGWTVED 235 (345)
Q Consensus 221 i~~yd~~~~~W~~~~ 235 (345)
++.+|+.+++...+.
T Consensus 354 I~v~d~~~g~~~~lt 368 (427)
T PRK02889 354 LYVQDLATGQVTALT 368 (427)
T ss_pred EEEEECCCCCeEEcc
Confidence 888998887776654
No 146
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=83.30 E-value=31 Score=30.36 Aligned_cols=120 Identities=12% Similarity=0.056 Sum_probs=74.2
Q ss_pred eeEEEEE--CCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccCCCCCCCceeeeeeEe--CC-eEEEEcCc
Q 019186 94 HFGVVST--AGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPRASMLVPRAMFACCAL--KE-KIVVAGGF 168 (345)
Q Consensus 94 ~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~-~iyv~gG~ 168 (345)
.|+++.. ...+.+|+-.. -....++|+.+++=...-..+..|..++..++ ++ .+|.--.-
T Consensus 7 gH~~a~~p~~~~avafaRRP---------------G~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd 71 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRP---------------GTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTEND 71 (305)
T ss_pred ccceeeCCCCCeEEEEEeCC---------------CcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccc
Confidence 4555555 46688887552 34688999999875543344566665555444 44 55665432
Q ss_pred CCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeEEEE-CC-EEEEE-ec----------------CcceEEEEECCCC
Q 019186 169 TSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVI-GG-KVHVL-HK----------------GLSTVQVLDHMGL 229 (345)
Q Consensus 169 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~-~~-~iyv~-gG----------------~~~~i~~yd~~~~ 229 (345)
- ....-.+-+||.. +..+++..++..+...|-+..+ |+ .|.|. || ...++...|..++
T Consensus 72 ~--~~g~G~IgVyd~~-~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG 148 (305)
T PF07433_consen 72 Y--ETGRGVIGVYDAA-RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG 148 (305)
T ss_pred c--CCCcEEEEEEECc-CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC
Confidence 2 2335679999998 7788888777665666666655 44 35554 44 3445666777776
Q ss_pred Ce
Q 019186 230 GW 231 (345)
Q Consensus 230 ~W 231 (345)
+-
T Consensus 149 ~l 150 (305)
T PF07433_consen 149 AL 150 (305)
T ss_pred ce
Confidence 53
No 147
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=82.78 E-value=43 Score=31.56 Aligned_cols=177 Identities=13% Similarity=0.084 Sum_probs=89.7
Q ss_pred EEEecCCCCeEEEEeCCCC-C-EEeCCCCCccccccceeEEEEE-CCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeC
Q 019186 59 CVCAFDPENLWQLYDPLRD-L-WITLPVLPSKIRHLAHFGVVST-AGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDP 135 (345)
Q Consensus 59 ~v~gg~~~~~~~~yd~~~~-~-W~~~~~~~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~ 135 (345)
++..+.....+.++|...+ . -+.+..... .-++++.. .+.+++.|+. ..++.++|.
T Consensus 217 ~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~-----~v~~~~f~p~g~~i~Sgs~----------------D~tvriWd~ 275 (456)
T KOG0266|consen 217 YLLSGSDDKTLRIWDLKDDGRNLKTLKGHST-----YVTSVAFSPDGNLLVSGSD----------------DGTVRIWDV 275 (456)
T ss_pred EEEEecCCceEEEeeccCCCeEEEEecCCCC-----ceEEEEecCCCCEEEEecC----------------CCcEEEEec
Confidence 5555556678889998444 2 233332222 22344443 4578888875 347889999
Q ss_pred CCCCcccCCCCCCCceeeeeeE--eCCeEEEEcCcCCCCCCCceEEEEeCCCCceE---eCCCCCccCCCceeEEE-ECC
Q 019186 136 VTRQWSPRASMLVPRAMFACCA--LKEKIVVAGGFTSCRKSISQAEMYDPEKDVWV---PIPDLHRTHNSACTGVV-IGG 209 (345)
Q Consensus 136 ~t~~W~~~~~~~~~r~~~~~~~--~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~---~~~~~~~~~~~~~~~~~-~~~ 209 (345)
.+.+-... +......-+.+. -++.+++.+..++ .+.+||..+..-. .+.....+ .....+.. -++
T Consensus 276 ~~~~~~~~--l~~hs~~is~~~f~~d~~~l~s~s~d~------~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~~fsp~~ 346 (456)
T KOG0266|consen 276 RTGECVRK--LKGHSDGISGLAFSPDGNLLVSASYDG------TIRVWDLETGSKLCLKLLSGAENS-APVTSVQFSPNG 346 (456)
T ss_pred cCCeEEEe--eeccCCceEEEEECCCCCEEEEcCCCc------cEEEEECCCCceeeeecccCCCCC-CceeEEEECCCC
Confidence 88543222 222222222222 3667777775543 3899999988743 22222222 11122222 244
Q ss_pred EEEEEecCcceEEEEECCCC----CeeeccCCC-CC-CceEEEcCeEEEEeC--cEEEEecCCc
Q 019186 210 KVHVLHKGLSTVQVLDHMGL----GWTVEDYGW-LQ-GPMAIVHDSVYLMSH--GLIIKQHRDV 265 (345)
Q Consensus 210 ~iyv~gG~~~~i~~yd~~~~----~W~~~~~~~-~~-~~~~~~~~~l~~~~~--~~i~~~d~~~ 265 (345)
+..+.+...+.+-.+|+... .|....... .. ...-..++...+.|. ..|+.++..+
T Consensus 347 ~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s 410 (456)
T KOG0266|consen 347 KYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSS 410 (456)
T ss_pred cEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCc
Confidence 44444434446667776654 233322221 01 111123555555554 6777777776
No 148
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=82.37 E-value=20 Score=31.43 Aligned_cols=99 Identities=16% Similarity=0.052 Sum_probs=55.9
Q ss_pred cCceEEEeCCCCCcccCCCCCCCceeeeeeE--e--CCeEEEEcCcCCCCCCCceEEEEeCCCCceE-eCCCCCccCCCc
Q 019186 127 TNEVWSYDPVTRQWSPRASMLVPRAMFACCA--L--KEKIVVAGGFTSCRKSISQAEMYDPEKDVWV-PIPDLHRTHNSA 201 (345)
Q Consensus 127 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~--~--~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~~~~~ 201 (345)
...+-.||.+|-+.-.-.. |.....-+++. + .+++|+-|..++. +..||-.+++-. .++.-....-..
T Consensus 237 Hp~~rlYdv~T~Qcfvsan-Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~------IklwDGVS~rCv~t~~~AH~gsevc 309 (430)
T KOG0640|consen 237 HPTLRLYDVNTYQCFVSAN-PDDQHTGAITQVRYSSTGSLYVTASKDGA------IKLWDGVSNRCVRTIGNAHGGSEVC 309 (430)
T ss_pred CCceeEEeccceeEeeecC-cccccccceeEEEecCCccEEEEeccCCc------EEeeccccHHHHHHHHhhcCCceee
Confidence 4578889998876443333 32222222222 2 6899999887654 778887776643 233322221112
Q ss_pred eeEEEECCEEEEEecCcceEEEEECCCCCee
Q 019186 202 CTGVVIGGKVHVLHKGLSTVQVLDHMGLGWT 232 (345)
Q Consensus 202 ~~~~~~~~~iyv~gG~~~~i~~yd~~~~~W~ 232 (345)
.+.+.-|++..+..|.-+.+..+++.+++-.
T Consensus 310 Sa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l 340 (430)
T KOG0640|consen 310 SAVFTKNGKYILSSGKDSTVKLWEISTGRML 340 (430)
T ss_pred eEEEccCCeEEeecCCcceeeeeeecCCceE
Confidence 2223446776666666666777777776553
No 149
>PRK00178 tolB translocation protein TolB; Provisional
Probab=82.18 E-value=43 Score=31.12 Aligned_cols=172 Identities=5% Similarity=-0.056 Sum_probs=87.9
Q ss_pred CceEEEeCCCCCcccCCCCCCCceeeeeeEe-CC-eEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeEE
Q 019186 128 NEVWSYDPVTRQWSPRASMLVPRAMFACCAL-KE-KIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGV 205 (345)
Q Consensus 128 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~ 205 (345)
..++++|+.+++-+.+....... ...... ++ +|++.....+ ...++++|.++...+.+...... ... ...
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~~--~~~~~SpDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~~~~-~~~-~~~ 294 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGLN--GAPAWSPDGSKLAFVLSKDG----NPEIYVMDLASRQLSRVTNHPAI-DTE-PFW 294 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCCc--CCeEECCCCCEEEEEEccCC----CceEEEEECCCCCeEEcccCCCC-cCC-eEE
Confidence 47999999988776665433211 112222 44 4443322111 25789999999888776543322 111 122
Q ss_pred EECC-EEEEEec--CcceEEEEECCCCCeeeccCCCC-CCc-eEEEcC-eEEEEeC----cEEEEecCCc--eEEeccch
Q 019186 206 VIGG-KVHVLHK--GLSTVQVLDHMGLGWTVEDYGWL-QGP-MAIVHD-SVYLMSH----GLIIKQHRDV--RKVVASAS 273 (345)
Q Consensus 206 ~~~~-~iyv~gG--~~~~i~~yd~~~~~W~~~~~~~~-~~~-~~~~~~-~l~~~~~----~~i~~~d~~~--W~~~~~~p 273 (345)
.-++ .|++... ....++.+|+.+++++.+..... ... ....+| .|++... ..++.+|.++ .+.+....
T Consensus 295 spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~ 374 (430)
T PRK00178 295 GKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTS 374 (430)
T ss_pred CCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCC
Confidence 3344 4655542 24578889998888776642211 111 112234 4444443 3678888766 55554321
Q ss_pred hhcccceeEEEEECCeEEEEcceecCCCCcccccccCceeeeccCCC
Q 019186 274 EFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE 320 (345)
Q Consensus 274 ~~~~r~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~yd~~~~ 320 (345)
........-+++.+++....+.. ..++..+...+
T Consensus 375 ----~~~~p~~spdg~~i~~~~~~~g~---------~~l~~~~~~g~ 408 (430)
T PRK00178 375 ----LDESPSVAPNGTMLIYATRQQGR---------GVLMLVSINGR 408 (430)
T ss_pred ----CCCCceECCCCCEEEEEEecCCc---------eEEEEEECCCC
Confidence 11111233366666665433221 24566666543
No 150
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=82.02 E-value=47 Score=31.43 Aligned_cols=206 Identities=10% Similarity=0.019 Sum_probs=94.3
Q ss_pred CCeEEEEeCCCCCEEeCCCCCccccccceeEEEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccCCC
Q 019186 66 ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPRAS 145 (345)
Q Consensus 66 ~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~ 145 (345)
...++++|..+.+ .+..+... .....++...++.+...|... ..+..+|....+=..- .
T Consensus 238 ~g~v~iwD~~~~k--~~~~~~~~--h~~rvg~laW~~~~lssGsr~----------------~~I~~~dvR~~~~~~~-~ 296 (484)
T KOG0305|consen 238 DGTVQIWDVKEQK--KTRTLRGS--HASRVGSLAWNSSVLSSGSRD----------------GKILNHDVRISQHVVS-T 296 (484)
T ss_pred CCeEEEEehhhcc--ccccccCC--cCceeEEEeccCceEEEecCC----------------CcEEEEEEecchhhhh-h
Confidence 3455666665543 22333321 134445555677777777652 2455666644321111 1
Q ss_pred CCCCce-eeeeeEe-CCeEEEEcCcCCCCCCCceEEEEeCCCCceE-eCCCCCccCCCceeEEEECCEEEEEec--Ccce
Q 019186 146 MLVPRA-MFACCAL-KEKIVVAGGFTSCRKSISQAEMYDPEKDVWV-PIPDLHRTHNSACTGVVIGGKVHVLHK--GLST 220 (345)
Q Consensus 146 ~~~~r~-~~~~~~~-~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~~~~~~~~~~~~~~iyv~gG--~~~~ 220 (345)
+...+. .+++... ++....-||.++ .+.+||.....+. .+.....+ ....+-+-....|...|| .-..
T Consensus 297 ~~~H~qeVCgLkws~d~~~lASGgnDN------~~~Iwd~~~~~p~~~~~~H~aA-VKA~awcP~q~~lLAsGGGs~D~~ 369 (484)
T KOG0305|consen 297 LQGHRQEVCGLKWSPDGNQLASGGNDN------VVFIWDGLSPEPKFTFTEHTAA-VKALAWCPWQSGLLATGGGSADRC 369 (484)
T ss_pred hhcccceeeeeEECCCCCeeccCCCcc------ceEeccCCCccccEEEecccee-eeEeeeCCCccCceEEcCCCcccE
Confidence 222222 2233322 556666677653 4788887332221 11010011 111111233567778877 3455
Q ss_pred EEEEECCCCCeeecc-CCCCCCceEEE--cCeEEEEeC---cEEEEecCCceEEeccchhhcccceeEEEEECCeEEEEc
Q 019186 221 VQVLDHMGLGWTVED-YGWLQGPMAIV--HDSVYLMSH---GLIIKQHRDVRKVVASASEFRRRIGFAMIGMGDDIYVIG 294 (345)
Q Consensus 221 i~~yd~~~~~W~~~~-~~~~~~~~~~~--~~~l~~~~~---~~i~~~d~~~W~~~~~~p~~~~r~~~~~~~~~~~l~i~G 294 (345)
|..+|..+++-.... .....+.+.-. ...|..-.| +++..|+-.+-+.+..+..-..|..|-+..-++.-++.|
T Consensus 370 i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~ 449 (484)
T KOG0305|consen 370 IKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTG 449 (484)
T ss_pred EEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEe
Confidence 667777665433221 11011111111 223333333 544555444444444444344666666666677777777
Q ss_pred ceecC
Q 019186 295 GVIGP 299 (345)
Q Consensus 295 G~~~~ 299 (345)
+.+++
T Consensus 450 a~DET 454 (484)
T KOG0305|consen 450 AADET 454 (484)
T ss_pred cccCc
Confidence 76654
No 151
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=81.86 E-value=43 Score=30.93 Aligned_cols=112 Identities=13% Similarity=0.153 Sum_probs=56.6
Q ss_pred EeCCCCceEeCCCCCccCCCceeEEEECCEEEEEecCcceEEEEECCCC-----CeeeccCCCCC---Cce-EEEcCeEE
Q 019186 181 YDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGL-----GWTVEDYGWLQ---GPM-AIVHDSVY 251 (345)
Q Consensus 181 yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~i~~yd~~~~-----~W~~~~~~~~~---~~~-~~~~~~l~ 251 (345)
.|.....|+.+...... .........++.++++|. ...+..-+-... .|+++...... ..+ ..-++.++
T Consensus 265 ~d~G~~~W~~~~~~~~~-~l~~v~~~~dg~l~l~g~-~G~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~ 342 (398)
T PLN00033 265 WEPGQPYWQPHNRASAR-RIQNMGWRADGGLWLLTR-GGGLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAW 342 (398)
T ss_pred cCCCCcceEEecCCCcc-ceeeeeEcCCCCEEEEeC-CceEEEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEE
Confidence 34444458987554444 322233346788888873 444444333333 45554432111 112 22367888
Q ss_pred EEeC-cEEEEe-cCCc-eEEeccchhhcccceeEEEE-ECCeEEEEcc
Q 019186 252 LMSH-GLIIKQ-HRDV-RKVVASASEFRRRIGFAMIG-MGDDIYVIGG 295 (345)
Q Consensus 252 ~~~~-~~i~~~-d~~~-W~~~~~~p~~~~r~~~~~~~-~~~~l~i~GG 295 (345)
+.|. +.++.- |... |++.+..+ ..+-..+.+.. -+++.|+.|-
T Consensus 343 a~G~~G~v~~s~D~G~tW~~~~~~~-~~~~~ly~v~f~~~~~g~~~G~ 389 (398)
T PLN00033 343 AAGGSGILLRSTDGGKSWKRDKGAD-NIAANLYSVKFFDDKKGFVLGN 389 (398)
T ss_pred EEECCCcEEEeCCCCcceeEccccC-CCCcceeEEEEcCCCceEEEeC
Confidence 8887 334333 3333 99986322 11112234443 3478888864
No 152
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=81.83 E-value=38 Score=30.32 Aligned_cols=137 Identities=13% Similarity=0.088 Sum_probs=76.1
Q ss_pred CCeEEEEcCcCCCCCCCceEEEEeCCCCceEe-CCCCCccCCCceeEEEECCEEEEEecCcceEEEEECCCC--Ceeecc
Q 019186 159 KEKIVVAGGFTSCRKSISQAEMYDPEKDVWVP-IPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGL--GWTVED 235 (345)
Q Consensus 159 ~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~i~~yd~~~~--~W~~~~ 235 (345)
+..+.+-||-++ ..++++..+..|-- +..-... --...+.+++.+.+.|+....+..|+..++ +|....
T Consensus 75 ~~~l~aTGGgDD------~AflW~~~~ge~~~eltgHKDS--Vt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~ 146 (399)
T KOG0296|consen 75 NNNLVATGGGDD------LAFLWDISTGEFAGELTGHKDS--VTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQ 146 (399)
T ss_pred CCceEEecCCCc------eEEEEEccCCcceeEecCCCCc--eEEEEEccCceEEEecCCCccEEEEEcccCceEEEeec
Confidence 667777787553 47899998888642 2221111 123445778998888887888888887655 565531
Q ss_pred CCCC-----CCceEEEcCeEEEEeC--cEEEEecCCc--eEEeccchhhcccceeEEEEECCeEEEEcceecCCCCcccc
Q 019186 236 YGWL-----QGPMAIVHDSVYLMSH--GLIIKQHRDV--RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDI 306 (345)
Q Consensus 236 ~~~~-----~~~~~~~~~~l~~~~~--~~i~~~d~~~--W~~~~~~p~~~~r~~~~~~~~~~~l~i~GG~~~~~~~~~~~ 306 (345)
..-. .++ .+.++..|. +.++.|...+ -.++ ++....+..++-..-+|+.++.|-.++
T Consensus 147 e~~dieWl~WHp----~a~illAG~~DGsvWmw~ip~~~~~kv--~~Gh~~~ct~G~f~pdGKr~~tgy~dg-------- 212 (399)
T KOG0296|consen 147 EVEDIEWLKWHP----RAHILLAGSTDGSVWMWQIPSQALCKV--MSGHNSPCTCGEFIPDGKRILTGYDDG-------- 212 (399)
T ss_pred ccCceEEEEecc----cccEEEeecCCCcEEEEECCCcceeeE--ecCCCCCcccccccCCCceEEEEecCc--------
Confidence 1100 111 234555554 5666665443 2222 221123333444445666666554322
Q ss_pred cccCceeeeccCCCC
Q 019186 307 KPMSDVDVLTVGAER 321 (345)
Q Consensus 307 ~~~~~v~~yd~~~~~ 321 (345)
.+-+|||++..
T Consensus 213 ----ti~~Wn~ktg~ 223 (399)
T KOG0296|consen 213 ----TIIVWNPKTGQ 223 (399)
T ss_pred ----eEEEEecCCCc
Confidence 57788888863
No 153
>PRK04043 tolB translocation protein TolB; Provisional
Probab=81.82 E-value=45 Score=31.08 Aligned_cols=146 Identities=9% Similarity=-0.036 Sum_probs=83.5
Q ss_pred CCeEEEEeCCCCCEEeCCCCCccccccceeEEEEECC-EEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccCC
Q 019186 66 ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAG-KLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPRA 144 (345)
Q Consensus 66 ~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~ 144 (345)
..+++++|+.+++=+.+...+.. ......+-+| +|.+.-... ...++|++|..+++++++.
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~~~g~----~~~~~~SPDG~~la~~~~~~--------------g~~~Iy~~dl~~g~~~~LT 273 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIASSQGM----LVVSDVSKDGSKLLLTMAPK--------------GQPDIYLYDTNTKTLTQIT 273 (419)
T ss_pred CCEEEEEECCCCcEEEEecCCCc----EEeeEECCCCCEEEEEEccC--------------CCcEEEEEECCCCcEEEcc
Confidence 56899999999887777653321 1112233355 455443321 2358999999999888876
Q ss_pred CCCCCceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeEEEECCE-EEEEecC------
Q 019186 145 SMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGK-VHVLHKG------ 217 (345)
Q Consensus 145 ~~~~~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-iyv~gG~------ 217 (345)
..+..-......--+.+|+......+ ...++++|..+.+.+.+..- . ... ....-+++ |......
T Consensus 274 ~~~~~d~~p~~SPDG~~I~F~Sdr~g----~~~Iy~~dl~~g~~~rlt~~--g-~~~-~~~SPDG~~Ia~~~~~~~~~~~ 345 (419)
T PRK04043 274 NYPGIDVNGNFVEDDKRIVFVSDRLG----YPNIFMKKLNSGSVEQVVFH--G-KNN-SSVSTYKNYIVYSSRETNNEFG 345 (419)
T ss_pred cCCCccCccEECCCCCEEEEEECCCC----CceEEEEECCCCCeEeCccC--C-CcC-ceECCCCCEEEEEEcCCCcccC
Confidence 54431111111122445666643321 35799999998888665332 1 111 23333444 4333321
Q ss_pred --cceEEEEECCCCCeeeccCC
Q 019186 218 --LSTVQVLDHMGLGWTVEDYG 237 (345)
Q Consensus 218 --~~~i~~yd~~~~~W~~~~~~ 237 (345)
...++.+|+.++.++.+...
T Consensus 346 ~~~~~I~v~d~~~g~~~~LT~~ 367 (419)
T PRK04043 346 KNTFNLYLISTNSDYIRRLTAN 367 (419)
T ss_pred CCCcEEEEEECCCCCeEECCCC
Confidence 14788899988888887643
No 154
>PRK03629 tolB translocation protein TolB; Provisional
Probab=81.59 E-value=46 Score=31.06 Aligned_cols=100 Identities=11% Similarity=-0.058 Sum_probs=51.2
Q ss_pred CceEEEeCCCCCcccCCCCCCCceeeeeeEeCC-eEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeEEE
Q 019186 128 NEVWSYDPVTRQWSPRASMLVPRAMFACCALKE-KIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVV 206 (345)
Q Consensus 128 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~ 206 (345)
..++++|..+++-+.+...+..... ....-++ +|++.....+ ...++.+|.++...+.+..-... . ......
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~~~~~~-~~~SPDG~~La~~~~~~g----~~~I~~~d~~tg~~~~lt~~~~~-~-~~~~wS 295 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFPRHNGA-PAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTDGRSN-N-TEPTWF 295 (429)
T ss_pred cEEEEEECCCCCeEEccCCCCCcCC-eEECCCCCEEEEEEcCCC----CcEEEEEECCCCCEEEccCCCCC-c-CceEEC
Confidence 5789999988776655544322111 1111244 4554432221 24589999998877766433222 1 112223
Q ss_pred ECCE-EEEEec--CcceEEEEECCCCCeeec
Q 019186 207 IGGK-VHVLHK--GLSTVQVLDHMGLGWTVE 234 (345)
Q Consensus 207 ~~~~-iyv~gG--~~~~i~~yd~~~~~W~~~ 234 (345)
-+++ |+.... ....++.+|+.++.-+.+
T Consensus 296 PDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~l 326 (429)
T PRK03629 296 PDSQNLAYTSDQAGRPQVYKVNINGGAPQRI 326 (429)
T ss_pred CCCCEEEEEeCCCCCceEEEEECCCCCeEEe
Confidence 3444 433321 234677777766655444
No 155
>PRK02889 tolB translocation protein TolB; Provisional
Probab=81.14 E-value=47 Score=30.93 Aligned_cols=156 Identities=11% Similarity=-0.029 Sum_probs=74.3
Q ss_pred CcEEEEEecCCCCeEEEEeCCCCCEEeCCCCCccccccceeEEEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEe
Q 019186 55 ENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYD 134 (345)
Q Consensus 55 ~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd 134 (345)
+...|+........++..|.....-+.+..-... .... ..+-+++.+++..... ....++++|
T Consensus 164 ~~iayv~~~~~~~~L~~~D~dG~~~~~l~~~~~~---v~~p-~wSPDG~~la~~s~~~-------------~~~~I~~~d 226 (427)
T PRK02889 164 TRIAYVIKTGNRYQLQISDADGQNAQSALSSPEP---IISP-AWSPDGTKLAYVSFES-------------KKPVVYVHD 226 (427)
T ss_pred cEEEEEEccCCccEEEEECCCCCCceEeccCCCC---cccc-eEcCCCCEEEEEEccC-------------CCcEEEEEE
Confidence 3444444222345788888866555554332221 1111 2223555444433211 134699999
Q ss_pred CCCCCcccCCCCCCCceeeeeeEeCC-eEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeEEEECCE-EE
Q 019186 135 PVTRQWSPRASMLVPRAMFACCALKE-KIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGK-VH 212 (345)
Q Consensus 135 ~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-iy 212 (345)
+.+++=+.+...+... ......-++ +|++.....+ ..+++.+|..+...+.+..-... . ......-+++ |+
T Consensus 227 l~~g~~~~l~~~~g~~-~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~~~~-~-~~~~wSpDG~~l~ 299 (427)
T PRK02889 227 LATGRRRVVANFKGSN-SAPAWSPDGRTLAVALSRDG----NSQIYTVNADGSGLRRLTQSSGI-D-TEPFFSPDGRSIY 299 (427)
T ss_pred CCCCCEEEeecCCCCc-cceEECCCCCEEEEEEccCC----CceEEEEECCCCCcEECCCCCCC-C-cCeEEcCCCCEEE
Confidence 9887654444333211 111112244 4544333221 35688888887766655432211 1 1122333554 54
Q ss_pred EEec--CcceEEEEECCCCCeeec
Q 019186 213 VLHK--GLSTVQVLDHMGLGWTVE 234 (345)
Q Consensus 213 v~gG--~~~~i~~yd~~~~~W~~~ 234 (345)
.... ....++.++..++..+.+
T Consensus 300 f~s~~~g~~~Iy~~~~~~g~~~~l 323 (427)
T PRK02889 300 FTSDRGGAPQIYRMPASGGAAQRV 323 (427)
T ss_pred EEecCCCCcEEEEEECCCCceEEE
Confidence 4432 234577777766665554
No 156
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=80.85 E-value=44 Score=30.43 Aligned_cols=99 Identities=10% Similarity=0.142 Sum_probs=55.4
Q ss_pred CCCEEeCCCCCccccccceeEEEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccCCC-----CCCC-
Q 019186 76 RDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPRAS-----MLVP- 149 (345)
Q Consensus 76 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~-----~~~~- 149 (345)
.+.|+.+.... ...-.++.++|++|++.- .-.++.++...+ -.++.. +...
T Consensus 189 ~~~Wt~l~~~~-----~~~~DIi~~kGkfYAvD~-----------------~G~l~~i~~~l~-i~~v~~~i~~~~~~g~ 245 (373)
T PLN03215 189 GNVLKALKQMG-----YHFSDIIVHKGQTYALDS-----------------IGIVYWINSDLE-FSRFGTSLDENITDGC 245 (373)
T ss_pred CCeeeEccCCC-----ceeeEEEEECCEEEEEcC-----------------CCeEEEEecCCc-eeeecceecccccCCc
Confidence 48999986422 345668899999999942 124666663211 111111 1101
Q ss_pred -ceeeeeeEeCCeEEEEcCcCCCC-----------CCCceEEEE--eCCCCceEeCCCCCcc
Q 019186 150 -RAMFACCALKEKIVVAGGFTSCR-----------KSISQAEMY--DPEKDVWVPIPDLHRT 197 (345)
Q Consensus 150 -r~~~~~~~~~~~iyv~gG~~~~~-----------~~~~~v~~y--d~~~~~W~~~~~~~~~ 197 (345)
......+...|.++++....... .....+++| |.+..+|.++.++.+.
T Consensus 246 ~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLgd~ 307 (373)
T PLN03215 246 WTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLGDN 307 (373)
T ss_pred ccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccCCe
Confidence 12234566678888887642110 012344455 7777889998877543
No 157
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=80.74 E-value=33 Score=28.91 Aligned_cols=142 Identities=17% Similarity=0.180 Sum_probs=82.6
Q ss_pred CcEEEEEecCCCCeEEEEeCCCCCEEeCCCCCccccccceeEEEEEC--CEEEEEcCCCCCCCCCCCCCCCCcCcCceEE
Q 019186 55 ENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTA--GKLFVLGGGSDAVDPLTGDQDGSFATNEVWS 132 (345)
Q Consensus 55 ~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~ 132 (345)
+.++...|| ...+.++|..+++= +...... ......+.++ ..+.+-|+. ...+..
T Consensus 71 nskf~s~Gg--Dk~v~vwDV~TGkv--~Rr~rgH---~aqVNtV~fNeesSVv~Sgsf----------------D~s~r~ 127 (307)
T KOG0316|consen 71 NSKFASCGG--DKAVQVWDVNTGKV--DRRFRGH---LAQVNTVRFNEESSVVASGSF----------------DSSVRL 127 (307)
T ss_pred ccccccCCC--CceEEEEEcccCee--eeecccc---cceeeEEEecCcceEEEeccc----------------cceeEE
Confidence 444444454 34678899988852 1112111 2223344443 346666664 357889
Q ss_pred EeCCCCCcccCCCCCCCceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCC-CCccCCCceeEEEECCEE
Q 019186 133 YDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPD-LHRTHNSACTGVVIGGKV 211 (345)
Q Consensus 133 yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~-~~~~~~~~~~~~~~~~~i 211 (345)
||..++..+.+.-+...+..-..+.+.+..++.|..++. +-.||+...+-. .+ +..+ .....+.-++.-
T Consensus 128 wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGt------vRtydiR~G~l~--sDy~g~p--it~vs~s~d~nc 197 (307)
T KOG0316|consen 128 WDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGT------VRTYDIRKGTLS--SDYFGHP--ITSVSFSKDGNC 197 (307)
T ss_pred EEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCc------EEEEEeecceee--hhhcCCc--ceeEEecCCCCE
Confidence 999999988888888888877777788877777766543 788998776532 22 2222 112223334444
Q ss_pred EEEecCcceEEEEECCCC
Q 019186 212 HVLHKGLSTVQVLDHMGL 229 (345)
Q Consensus 212 yv~gG~~~~i~~yd~~~~ 229 (345)
.++|-..+++...|-.++
T Consensus 198 ~La~~l~stlrLlDk~tG 215 (307)
T KOG0316|consen 198 SLASSLDSTLRLLDKETG 215 (307)
T ss_pred EEEeeccceeeecccchh
Confidence 444434445555555554
No 158
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=80.21 E-value=18 Score=35.37 Aligned_cols=108 Identities=13% Similarity=0.063 Sum_probs=61.7
Q ss_pred EEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccCCCCCCCceeeeeeEe-CCeEEEEcCcCCCCCCC
Q 019186 97 VVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPRASMLVPRAMFACCAL-KEKIVVAGGFTSCRKSI 175 (345)
Q Consensus 97 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~~~ 175 (345)
+..+.+.-|+++|. ...++-.+|..++.-.++-. ...+.-.+++.. .|+-.+.|+.+
T Consensus 541 v~FHPNs~Y~aTGS---------------sD~tVRlWDv~~G~~VRiF~-GH~~~V~al~~Sp~Gr~LaSg~ed------ 598 (707)
T KOG0263|consen 541 VSFHPNSNYVATGS---------------SDRTVRLWDVSTGNSVRIFT-GHKGPVTALAFSPCGRYLASGDED------ 598 (707)
T ss_pred EEECCcccccccCC---------------CCceEEEEEcCCCcEEEEec-CCCCceEEEEEcCCCceEeecccC------
Confidence 44567778888775 34567788888876544421 111222233333 45444445433
Q ss_pred ceEEEEeCCCCceEeCCCCCcc-CCCceeEEEECCEEEEEecCcceEEEEECCC
Q 019186 176 SQAEMYDPEKDVWVPIPDLHRT-HNSACTGVVIGGKVHVLHKGLSTVQVLDHMG 228 (345)
Q Consensus 176 ~~v~~yd~~~~~W~~~~~~~~~-~~~~~~~~~~~~~iyv~gG~~~~i~~yd~~~ 228 (345)
..+.+||..+.+- +..+... .-...-.+..+|.+.+.||.-+++-.+|...
T Consensus 599 ~~I~iWDl~~~~~--v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 599 GLIKIWDLANGSL--VKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred CcEEEEEcCCCcc--hhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 3488999887542 2222222 0112223466899999999888888888643
No 159
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=80.03 E-value=40 Score=29.45 Aligned_cols=130 Identities=15% Similarity=0.146 Sum_probs=61.8
Q ss_pred CCeEEEEeCCCCCEEeCCCCCccccccceeEEEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccCCC
Q 019186 66 ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPRAS 145 (345)
Q Consensus 66 ~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~ 145 (345)
...+.++|+.+++=.++..-..+ -+..|-+-..+..+++-|.+ .+++-.+|+...+ .+..
T Consensus 93 Dk~~k~wDL~S~Q~~~v~~Hd~p--vkt~~wv~~~~~~cl~TGSW----------------DKTlKfWD~R~~~--pv~t 152 (347)
T KOG0647|consen 93 DKQAKLWDLASGQVSQVAAHDAP--VKTCHWVPGMNYQCLVTGSW----------------DKTLKFWDTRSSN--PVAT 152 (347)
T ss_pred CCceEEEEccCCCeeeeeecccc--eeEEEEecCCCcceeEeccc----------------ccceeecccCCCC--eeee
Confidence 45677899999977666533222 12222222122234455544 3456667775332 3333
Q ss_pred CCCCceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCc--eEeCCCCCccCCCceeEEEECCEEEEEecCcceEEE
Q 019186 146 MLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDV--WVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQV 223 (345)
Q Consensus 146 ~~~~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~i~~ 223 (345)
+..+-..+++-+...-+.|.-+ .+.+.+|+++... ...+.+...- ....-++.-++..|.+|+....+..
T Consensus 153 ~~LPeRvYa~Dv~~pm~vVata-------~r~i~vynL~n~~te~k~~~SpLk~-Q~R~va~f~d~~~~alGsiEGrv~i 224 (347)
T KOG0647|consen 153 LQLPERVYAADVLYPMAVVATA-------ERHIAVYNLENPPTEFKRIESPLKW-QTRCVACFQDKDGFALGSIEGRVAI 224 (347)
T ss_pred eeccceeeehhccCceeEEEec-------CCcEEEEEcCCCcchhhhhcCcccc-eeeEEEEEecCCceEeeeecceEEE
Confidence 3333223333333333333322 2348888886553 3444333222 2223334557778888873333333
No 160
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=79.63 E-value=51 Score=30.40 Aligned_cols=182 Identities=9% Similarity=0.012 Sum_probs=96.7
Q ss_pred cCceEEEeCCCCCccc--CCCCCCCce-eeeeeE-eCCeEEEEcCcCCCCCCCceEEEEeCCCC-----ceEeCCCCCcc
Q 019186 127 TNEVWSYDPVTRQWSP--RASMLVPRA-MFACCA-LKEKIVVAGGFTSCRKSISQAEMYDPEKD-----VWVPIPDLHRT 197 (345)
Q Consensus 127 ~~~~~~yd~~t~~W~~--~~~~~~~r~-~~~~~~-~~~~iyv~gG~~~~~~~~~~v~~yd~~~~-----~W~~~~~~~~~ 197 (345)
...++++...+..-.. +-.-+.... ...+.. -+++..++.-.... . .+.++..|.... .|..+.+-...
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~-~-~s~v~~~d~~~~~~~~~~~~~l~~~~~~ 278 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGT-S-ESEVYLLDLDDGGSPDAKPKLLSPREDG 278 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSS-S-EEEEEEEECCCTTTSS-SEEEEEESSSS
T ss_pred CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccc-c-CCeEEEEeccccCCCcCCcEEEeCCCCc
Confidence 5678888888876552 211121221 222222 24454444333321 1 478999998875 78877442222
Q ss_pred CCCceeEEEECCEEEEEec---CcceEEEEECCCCC---ee-eccCCCC---CCceEEEcCeEEEEeC----cEEEEecC
Q 019186 198 HNSACTGVVIGGKVHVLHK---GLSTVQVLDHMGLG---WT-VEDYGWL---QGPMAIVHDSVYLMSH----GLIIKQHR 263 (345)
Q Consensus 198 ~~~~~~~~~~~~~iyv~gG---~~~~i~~yd~~~~~---W~-~~~~~~~---~~~~~~~~~~l~~~~~----~~i~~~d~ 263 (345)
....+...++.+|+... ....+...++.+.. |. .+.+... -..+...++.|++... ..+..++.
T Consensus 279 --~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~ 356 (414)
T PF02897_consen 279 --VEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDL 356 (414)
T ss_dssp ---EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEET
T ss_pred --eEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEEC
Confidence 22334456889998854 56778899987665 65 4433222 3344456777777654 78999999
Q ss_pred C-ceEEec-cchhhcccceeEEEE--E-CCeE-EEEcceecCCCCcccccccCceeeeccCCCCCceeEc
Q 019186 264 D-VRKVVA-SASEFRRRIGFAMIG--M-GDDI-YVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQV 327 (345)
Q Consensus 264 ~-~W~~~~-~~p~~~~r~~~~~~~--~-~~~l-~i~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~v 327 (345)
. .|.... .+| ......... . .+.+ |.+.+.... ..++.||+.++ +-..+
T Consensus 357 ~~~~~~~~~~~p---~~g~v~~~~~~~~~~~~~~~~ss~~~P----------~~~y~~d~~t~--~~~~~ 411 (414)
T PF02897_consen 357 DDGKESREIPLP---EAGSVSGVSGDFDSDELRFSYSSFTTP----------PTVYRYDLATG--ELTLL 411 (414)
T ss_dssp T-TEEEEEEESS---SSSEEEEEES-TT-SEEEEEEEETTEE----------EEEEEEETTTT--CEEEE
T ss_pred CCCcEEeeecCC---cceEEeccCCCCCCCEEEEEEeCCCCC----------CEEEEEECCCC--CEEEE
Confidence 8 655443 222 111111111 1 2333 333444333 37899999998 55443
No 161
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=78.40 E-value=43 Score=31.46 Aligned_cols=105 Identities=13% Similarity=0.157 Sum_probs=62.5
Q ss_pred ECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccCCCCCC-CceeeeeeEe-CCeEEEEcCcCCCCCCCce
Q 019186 100 TAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPRASMLV-PRAMFACCAL-KEKIVVAGGFTSCRKSISQ 177 (345)
Q Consensus 100 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~-~r~~~~~~~~-~~~iyv~gG~~~~~~~~~~ 177 (345)
-+++-+++||+ .+++-++|+.+-+=+.-..++. +-+.+++++. +.++ .|.-+.+ ..
T Consensus 475 pdgrtLivGGe----------------astlsiWDLAapTprikaeltssapaCyALa~spDakv-cFsccsd-----Gn 532 (705)
T KOG0639|consen 475 PDGRTLIVGGE----------------ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKV-CFSCCSD-----GN 532 (705)
T ss_pred CCCceEEeccc----------------cceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccce-eeeeccC-----Cc
Confidence 37888899996 4578889988766444444442 2333444444 4444 3433332 23
Q ss_pred EEEEeCCCCceEeCCCCCccCCCceeEEEE--CCEEEEEecCcceEEEEECCCC
Q 019186 178 AEMYDPEKDVWVPIPDLHRTHNSACTGVVI--GGKVHVLHKGLSTVQVLDHMGL 229 (345)
Q Consensus 178 v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~--~~~iyv~gG~~~~i~~yd~~~~ 229 (345)
+.+||+.+.. .|..++.. -.+..++.+ +|.=...||.-+++-++|+++.
T Consensus 533 I~vwDLhnq~--~VrqfqGh-tDGascIdis~dGtklWTGGlDntvRcWDlreg 583 (705)
T KOG0639|consen 533 IAVWDLHNQT--LVRQFQGH-TDGASCIDISKDGTKLWTGGLDNTVRCWDLREG 583 (705)
T ss_pred EEEEEcccce--eeecccCC-CCCceeEEecCCCceeecCCCccceeehhhhhh
Confidence 8899987765 34455544 344444444 4665667887777888887654
No 162
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=78.27 E-value=61 Score=30.53 Aligned_cols=93 Identities=13% Similarity=0.072 Sum_probs=54.2
Q ss_pred CceEEEeCCCC-Cc-ccCCCCCCCceeeeeeEe-CCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeE
Q 019186 128 NEVWSYDPVTR-QW-SPRASMLVPRAMFACCAL-KEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTG 204 (345)
Q Consensus 128 ~~~~~yd~~t~-~W-~~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~ 204 (345)
.++.+||...+ .- +.+..+.... ++++.. ++.+++.|+.++ .+.++|.++.+-... +... .....+
T Consensus 225 ~tiriwd~~~~~~~~~~l~gH~~~v--~~~~f~p~g~~i~Sgs~D~------tvriWd~~~~~~~~~--l~~h-s~~is~ 293 (456)
T KOG0266|consen 225 KTLRIWDLKDDGRNLKTLKGHSTYV--TSVAFSPDGNLLVSGSDDG------TVRIWDVRTGECVRK--LKGH-SDGISG 293 (456)
T ss_pred ceEEEeeccCCCeEEEEecCCCCce--EEEEecCCCCEEEEecCCC------cEEEEeccCCeEEEe--eecc-CCceEE
Confidence 46888888433 21 2222222222 333332 557888888664 489999988543322 2222 222333
Q ss_pred E--EECCEEEEEecCcceEEEEECCCCCe
Q 019186 205 V--VIGGKVHVLHKGLSTVQVLDHMGLGW 231 (345)
Q Consensus 205 ~--~~~~~iyv~gG~~~~i~~yd~~~~~W 231 (345)
+ .-++.+++.+.....+..||..++.-
T Consensus 294 ~~f~~d~~~l~s~s~d~~i~vwd~~~~~~ 322 (456)
T KOG0266|consen 294 LAFSPDGNLLVSASYDGTIRVWDLETGSK 322 (456)
T ss_pred EEECCCCCEEEEcCCCccEEEEECCCCce
Confidence 3 34677777776678889999988874
No 163
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=78.25 E-value=50 Score=29.49 Aligned_cols=158 Identities=11% Similarity=0.014 Sum_probs=78.7
Q ss_pred CcEEEEEecCCCCeEEEEeCCCCCEEeCCCCCccc--cccceeEEEEE-CC-EEEEEcCCCCCCCCCCCCCCCCcCcCce
Q 019186 55 ENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKI--RHLAHFGVVST-AG-KLFVLGGGSDAVDPLTGDQDGSFATNEV 130 (345)
Q Consensus 55 ~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~~~~~--~~~~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~~~~~~~ 130 (345)
+..|++.. -..+.+..|+...+......+....+ ++|. ++.+ ++ ..|++.--+ ..-.+
T Consensus 156 ~~~l~v~D-LG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRH---i~FHpn~k~aY~v~EL~--------------stV~v 217 (346)
T COG2706 156 GRYLVVPD-LGTDRIFLYDLDDGKLTPADPAEVKPGAGPRH---IVFHPNGKYAYLVNELN--------------STVDV 217 (346)
T ss_pred CCEEEEee-cCCceEEEEEcccCccccccccccCCCCCcce---EEEcCCCcEEEEEeccC--------------CEEEE
Confidence 33444432 33678999999887765543322211 1122 4555 33 388886542 35567
Q ss_pred EEEeCCCCCcccCCC---CCC----CceeeeeeEe--CCeEEEEcCcCCCCCCCceEEEEe--CCCCceEeCCCCCccCC
Q 019186 131 WSYDPVTRQWSPRAS---MLV----PRAMFACCAL--KEKIVVAGGFTSCRKSISQAEMYD--PEKDVWVPIPDLHRTHN 199 (345)
Q Consensus 131 ~~yd~~t~~W~~~~~---~~~----~r~~~~~~~~--~~~iyv~gG~~~~~~~~~~v~~yd--~~~~~W~~~~~~~~~~~ 199 (345)
+.||+..++.+.++. +|. .+....+.+. +..||+.- +..+++.+|. +.++.-+.+...+....
T Consensus 218 ~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasN------Rg~dsI~~f~V~~~~g~L~~~~~~~teg~ 291 (346)
T COG2706 218 LEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASN------RGHDSIAVFSVDPDGGKLELVGITPTEGQ 291 (346)
T ss_pred EEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEec------CCCCeEEEEEEcCCCCEEEEEEEeccCCc
Confidence 888988788776553 342 2222233322 44566652 2244566664 55554443333222211
Q ss_pred -C-ceeEEEECCEEEEEecCcce--EEEEECCCCCeeeccC
Q 019186 200 -S-ACTGVVIGGKVHVLHKGLST--VQVLDHMGLGWTVEDY 236 (345)
Q Consensus 200 -~-~~~~~~~~~~iyv~gG~~~~--i~~yd~~~~~W~~~~~ 236 (345)
- ......-++.|++.+-.... ++.-|.++++-..+..
T Consensus 292 ~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 292 FPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGR 332 (346)
T ss_pred CCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEeccc
Confidence 0 11222223445555433333 4445667777766643
No 164
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=77.14 E-value=61 Score=29.94 Aligned_cols=194 Identities=10% Similarity=0.074 Sum_probs=91.7
Q ss_pred CCCEEeCCCCCc--cccc-cceeEEEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccCCCCC-CCce
Q 019186 76 RDLWITLPVLPS--KIRH-LAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPRASML-VPRA 151 (345)
Q Consensus 76 ~~~W~~~~~~~~--~~~~-~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~-~~r~ 151 (345)
-++|+.... +. .... ....++...++..|++|-. ..+++=+-.-++|++++..+ .+..
T Consensus 119 G~tW~~~~~-~~~~~~~~~~~l~~v~f~~~~g~~vG~~-----------------G~il~T~DgG~tW~~~~~~~~~p~~ 180 (398)
T PLN00033 119 GKTWVPRSI-PSAEDEDFNYRFNSISFKGKEGWIIGKP-----------------AILLHTSDGGETWERIPLSPKLPGE 180 (398)
T ss_pred CCCceECcc-CcccccccccceeeeEEECCEEEEEcCc-----------------eEEEEEcCCCCCceECccccCCCCC
Confidence 448988642 21 1011 1234555667788888642 23444444457899875422 1111
Q ss_pred eeeeeEe-CCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCc------cC-----------CCceeEE-EECCEEE
Q 019186 152 MFACCAL-KEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHR------TH-----------NSACTGV-VIGGKVH 212 (345)
Q Consensus 152 ~~~~~~~-~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~------~~-----------~~~~~~~-~~~~~iy 212 (345)
......+ ++..+++|... .++.=+-.-.+|+.+...+. .. .....+. .-++.++
T Consensus 181 ~~~i~~~~~~~~~ivg~~G-------~v~~S~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~ 253 (398)
T PLN00033 181 PVLIKATGPKSAEMVTDEG-------AIYVTSNAGRNWKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYV 253 (398)
T ss_pred ceEEEEECCCceEEEeccc-------eEEEECCCCCCceEcccccccccccccccccccccceeccceeeEEEcCCCCEE
Confidence 2333344 34577776321 24444445568987622110 00 0111122 2356677
Q ss_pred EEecCcceEEEE-ECCCCCeeeccCCCC---CCceEEEcCeEEEEeC-cEEEE-ecCCc-eE--Eeccchhhcccc-eeE
Q 019186 213 VLHKGLSTVQVL-DHMGLGWTVEDYGWL---QGPMAIVHDSVYLMSH-GLIIK-QHRDV-RK--VVASASEFRRRI-GFA 282 (345)
Q Consensus 213 v~gG~~~~i~~y-d~~~~~W~~~~~~~~---~~~~~~~~~~l~~~~~-~~i~~-~d~~~-W~--~~~~~p~~~~r~-~~~ 282 (345)
++| ....++.- |.-...|+.+..... .......++.+++.+. +.++. -|... |+ ....++....+. -..
T Consensus 254 ~vg-~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~ 332 (398)
T PLN00033 254 AVS-SRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYVSKGTGLTEEDFDFEEADIKSRGFGILD 332 (398)
T ss_pred EEE-CCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEEecCCCCcccccceeecccCCCCcceEE
Confidence 776 33444443 333334897754443 1222335788888876 44443 33332 64 233333111221 222
Q ss_pred EE-EECCeEEEEcc
Q 019186 283 MI-GMGDDIYVIGG 295 (345)
Q Consensus 283 ~~-~~~~~l~i~GG 295 (345)
+. .-++.++++|.
T Consensus 333 v~~~~d~~~~a~G~ 346 (398)
T PLN00033 333 VGYRSKKEAWAAGG 346 (398)
T ss_pred EEEcCCCcEEEEEC
Confidence 32 23667888876
No 165
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=76.79 E-value=52 Score=28.97 Aligned_cols=155 Identities=12% Similarity=0.106 Sum_probs=72.0
Q ss_pred CceEEEeCCCCCcccCCCCCCCceeeeeeEeCCeE---EEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeE
Q 019186 128 NEVWSYDPVTRQWSPRASMLVPRAMFACCALKEKI---VVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTG 204 (345)
Q Consensus 128 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~i---yv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~ 204 (345)
.++.+||..++. +++.+..+-..-++..+.... .++.|..++ .+.+++ .+.|..+..+... ......
T Consensus 63 etI~IYDm~k~~--qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG-----~i~iw~--~~~W~~~~slK~H-~~~Vt~ 132 (362)
T KOG0294|consen 63 ETIHIYDMRKRK--QLGILLSHAGSITALKFYPPLSKSHLLSGSDDG-----HIIIWR--VGSWELLKSLKAH-KGQVTD 132 (362)
T ss_pred CcEEEEeccchh--hhcceeccccceEEEEecCCcchhheeeecCCC-----cEEEEE--cCCeEEeeeeccc-ccccce
Confidence 478999998775 444444332222222222222 455554432 366666 4678777665443 111222
Q ss_pred EEE--CCEEEEEecCcceEEEEECCCCCeeeccCCCCCCceEE---EcCeEEEEeCcEEEEecCCc---eEEeccchhhc
Q 019186 205 VVI--GGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQGPMAI---VHDSVYLMSHGLIIKQHRDV---RKVVASASEFR 276 (345)
Q Consensus 205 ~~~--~~~iyv~gG~~~~i~~yd~~~~~W~~~~~~~~~~~~~~---~~~~l~~~~~~~i~~~d~~~---W~~~~~~p~~~ 276 (345)
..+ .++|-+.-|.-..+-.+|+.+++=..+-+....+..+. -++.+++.+...|..|..+. ...+.. .
T Consensus 133 lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~----~ 208 (362)
T KOG0294|consen 133 LSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIEN----P 208 (362)
T ss_pred eEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhc----c
Confidence 222 45554432223333344444433222222222111111 24456666667777776655 333321 1
Q ss_pred ccceeEEEEECCeEEEEccee
Q 019186 277 RRIGFAMIGMGDDIYVIGGVI 297 (345)
Q Consensus 277 ~r~~~~~~~~~~~l~i~GG~~ 297 (345)
.|..+ +.-+++..+++||.+
T Consensus 209 ~r~l~-~~~l~~~~L~vG~d~ 228 (362)
T KOG0294|consen 209 KRILC-ATFLDGSELLVGGDN 228 (362)
T ss_pred cccee-eeecCCceEEEecCC
Confidence 34433 333455566777754
No 166
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=76.76 E-value=39 Score=27.52 Aligned_cols=141 Identities=14% Similarity=0.101 Sum_probs=70.8
Q ss_pred CcEEEEEecCCCCeEEEEeCCCCC--EEeCCCC-CccccccceeEEEEEC-CEEEEEcCCCCCCCCCCCCCCCCcCcCce
Q 019186 55 ENLLCVCAFDPENLWQLYDPLRDL--WITLPVL-PSKIRHLAHFGVVSTA-GKLFVLGGGSDAVDPLTGDQDGSFATNEV 130 (345)
Q Consensus 55 ~~~l~v~gg~~~~~~~~yd~~~~~--W~~~~~~-~~~~~~~~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~~~~~~~~~ 130 (345)
.+.+|+|-| +.++.++..... -+.+... +.. +..-.++....+ +++|+|-|. ..
T Consensus 16 ~g~~y~FkG---~~~w~~~~~~~~~~p~~I~~~w~~~-p~~IDAa~~~~~~~~~yfFkg~------------------~y 73 (194)
T cd00094 16 RGELYFFKG---RYFWRLSPGKPPGSPFLISSFWPSL-PSPVDAAFERPDTGKIYFFKGD------------------KY 73 (194)
T ss_pred CCEEEEEeC---CEEEEEeCCCCCCCCeEhhhhCCCC-CCCccEEEEECCCCEEEEECCC------------------EE
Confidence 478888865 456777654111 1111111 110 011222222223 889999763 58
Q ss_pred EEEeCCCCCccc---CCCCCCC----ceeeeeeEe-CCeEEEEcCcCCCCCCCceEEEEeCCCCceEe-----C----CC
Q 019186 131 WSYDPVTRQWSP---RASMLVP----RAMFACCAL-KEKIVVAGGFTSCRKSISQAEMYDPEKDVWVP-----I----PD 193 (345)
Q Consensus 131 ~~yd~~t~~W~~---~~~~~~~----r~~~~~~~~-~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~-----~----~~ 193 (345)
|+|+..+..... +.....+ .-..+...- ++++|++.|. ..+.||..+++-.. + ..
T Consensus 74 w~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~--------~y~ry~~~~~~v~~~yP~~i~~~w~g 145 (194)
T cd00094 74 WVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGD--------KYWRYDEKTQKMDPGYPKLIETDFPG 145 (194)
T ss_pred EEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCC--------EEEEEeCCCccccCCCCcchhhcCCC
Confidence 888776422211 1111111 112222222 6899999873 36777765544321 1 11
Q ss_pred CCccCCCceeEEEE-CCEEEEEecCcceEEEEECCCCC
Q 019186 194 LHRTHNSACTGVVI-GGKVHVLHKGLSTVQVLDHMGLG 230 (345)
Q Consensus 194 ~~~~~~~~~~~~~~-~~~iyv~gG~~~~i~~yd~~~~~ 230 (345)
+|.. --++... ++++|++-| ...++||..+++
T Consensus 146 ~p~~---idaa~~~~~~~~yfF~g--~~y~~~d~~~~~ 178 (194)
T cd00094 146 VPDK---VDAAFRWLDGYYYFFKG--DQYWRFDPRSKE 178 (194)
T ss_pred cCCC---cceeEEeCCCcEEEEEC--CEEEEEeCccce
Confidence 2222 1223334 488999974 678999988765
No 167
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=76.05 E-value=54 Score=28.71 Aligned_cols=133 Identities=15% Similarity=0.146 Sum_probs=70.6
Q ss_pred CCeEEEEeCCCCCEEeCCCCCccccccceeEEEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccCCC
Q 019186 66 ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPRAS 145 (345)
Q Consensus 66 ~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~ 145 (345)
..++.+||..+++-...-....+ -..++..+..=.+.||. ...+-+||.++..=.+++.
T Consensus 34 DgslrlYdv~~~~l~~~~~~~~p-----lL~c~F~d~~~~~~G~~----------------dg~vr~~Dln~~~~~~igt 92 (323)
T KOG1036|consen 34 DGSLRLYDVPANSLKLKFKHGAP-----LLDCAFADESTIVTGGL----------------DGQVRRYDLNTGNEDQIGT 92 (323)
T ss_pred cCcEEEEeccchhhhhheecCCc-----eeeeeccCCceEEEecc----------------CceEEEEEecCCcceeecc
Confidence 34677898887743322111111 11234444444445554 3468899999987666665
Q ss_pred CCCCceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeEEEECCEEEEEecCcceEEEEE
Q 019186 146 MLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLD 225 (345)
Q Consensus 146 ~~~~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~i~~yd 225 (345)
...+...-.-. .....++.||++. .+..+|+....= +.....+ . ..-+....+...|+|+....+..||
T Consensus 93 h~~~i~ci~~~-~~~~~vIsgsWD~------~ik~wD~R~~~~--~~~~d~~-k-kVy~~~v~g~~LvVg~~~r~v~iyD 161 (323)
T KOG1036|consen 93 HDEGIRCIEYS-YEVGCVISGSWDK------TIKFWDPRNKVV--VGTFDQG-K-KVYCMDVSGNRLVVGTSDRKVLIYD 161 (323)
T ss_pred CCCceEEEEee-ccCCeEEEcccCc------cEEEEecccccc--ccccccC-c-eEEEEeccCCEEEEeecCceEEEEE
Confidence 43332111111 2234557777764 388888876211 1111111 1 1223344555666766778899999
Q ss_pred CCCCC
Q 019186 226 HMGLG 230 (345)
Q Consensus 226 ~~~~~ 230 (345)
+.+..
T Consensus 162 LRn~~ 166 (323)
T KOG1036|consen 162 LRNLD 166 (323)
T ss_pred ccccc
Confidence 97653
No 168
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=75.96 E-value=6.9 Score=22.47 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=14.5
Q ss_pred CceEEEcCeEEEEeC-cEEEEecCC
Q 019186 241 GPMAIVHDSVYLMSH-GLIIKQHRD 264 (345)
Q Consensus 241 ~~~~~~~~~l~~~~~-~~i~~~d~~ 264 (345)
.+.++.++.+|+.+. +.++.+|.+
T Consensus 15 ~~~~v~~g~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 15 SSPAVAGGRVYVGTGDGNLYALDAA 39 (40)
T ss_dssp S--EECTSEEEEE-TTSEEEEEETT
T ss_pred cCCEEECCEEEEEcCCCEEEEEeCC
Confidence 444666777777776 677777765
No 169
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=75.68 E-value=44 Score=29.71 Aligned_cols=97 Identities=8% Similarity=0.014 Sum_probs=53.8
Q ss_pred ceEEEEeCCCCc-eEeCCCCCccCCCceeEEEE-CCEEEEEecCcceEEEEECCCC------CeeeccCCCCCCceEEEc
Q 019186 176 SQAEMYDPEKDV-WVPIPDLHRTHNSACTGVVI-GGKVHVLHKGLSTVQVLDHMGL------GWTVEDYGWLQGPMAIVH 247 (345)
Q Consensus 176 ~~v~~yd~~~~~-W~~~~~~~~~~~~~~~~~~~-~~~iyv~gG~~~~i~~yd~~~~------~W~~~~~~~~~~~~~~~~ 247 (345)
..+..||..+.. -+++.-.|.. ......+.. .....+.++.-..|-.||+++. +|+.-+..+...-....+
T Consensus 50 gsv~lyd~~tg~~l~~fk~~~~~-~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck 128 (376)
T KOG1188|consen 50 GSVRLYDKGTGQLLEEFKGPPAT-TNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCK 128 (376)
T ss_pred CeEEEEeccchhhhheecCCCCc-ccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCc
Confidence 358889888854 3344444433 223232332 2233333334568889998765 354443222111112236
Q ss_pred CeEEEEeC------cEEEEecCCceEE-eccch
Q 019186 248 DSVYLMSH------GLIIKQHRDVRKV-VASAS 273 (345)
Q Consensus 248 ~~l~~~~~------~~i~~~d~~~W~~-~~~~p 273 (345)
+.+++.|. ..++.||...|++ +..+.
T Consensus 129 ~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~ 161 (376)
T KOG1188|consen 129 KNIIACGTELTRSDASVVLWDVRSEQQLLRQLN 161 (376)
T ss_pred CCeEEeccccccCceEEEEEEeccccchhhhhh
Confidence 67888886 7888999988888 54443
No 170
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=74.54 E-value=42 Score=27.41 Aligned_cols=64 Identities=16% Similarity=0.146 Sum_probs=37.9
Q ss_pred CcEEEEEecCCCCeEEEEeCCCCCEEeCCCCCccccccceeEEEE-ECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEE
Q 019186 55 ENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVS-TAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSY 133 (345)
Q Consensus 55 ~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~y 133 (345)
+..+.++-|.....+.+||.....-. .++.. ..+ .+.. -+|+.++++|..+ ...++..|
T Consensus 71 g~~favi~g~~~~~v~lyd~~~~~i~---~~~~~---~~n-~i~wsP~G~~l~~~g~~n-------------~~G~l~~w 130 (194)
T PF08662_consen 71 GNEFAVIYGSMPAKVTLYDVKGKKIF---SFGTQ---PRN-TISWSPDGRFLVLAGFGN-------------LNGDLEFW 130 (194)
T ss_pred CCEEEEEEccCCcccEEEcCcccEeE---eecCC---Cce-EEEECCCCCEEEEEEccC-------------CCcEEEEE
Confidence 67777776655568999999633322 23221 112 2222 3677888887632 12468889
Q ss_pred eCCCC
Q 019186 134 DPVTR 138 (345)
Q Consensus 134 d~~t~ 138 (345)
|..+.
T Consensus 131 d~~~~ 135 (194)
T PF08662_consen 131 DVRKK 135 (194)
T ss_pred ECCCC
Confidence 99843
No 171
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=74.52 E-value=54 Score=29.98 Aligned_cols=229 Identities=9% Similarity=-0.098 Sum_probs=92.4
Q ss_pred EEeCCCCC-EEeCCCCCcccccccee--EEEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccCCCCC
Q 019186 71 LYDPLRDL-WITLPVLPSKIRHLAHF--GVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPRASML 147 (345)
Q Consensus 71 ~yd~~~~~-W~~~~~~~~~~~~~~~~--~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~ 147 (345)
.-||.|+. =.+|.+.+... .+.++ ..-.-+|+-++|++..+ ....++.+|+.+++-+++...+
T Consensus 14 ~~D~~TG~~VtrLT~~~~~~-h~~YF~~~~ft~dG~kllF~s~~d-------------g~~nly~lDL~t~~i~QLTdg~ 79 (386)
T PF14583_consen 14 WIDPDTGHRVTRLTPPDGHS-HRLYFYQNCFTDDGRKLLFASDFD-------------GNRNLYLLDLATGEITQLTDGP 79 (386)
T ss_dssp EE-TTT--EEEE-S-TTS-E-E---TTS--B-TTS-EEEEEE-TT-------------SS-EEEEEETTT-EEEE---SS
T ss_pred EeCCCCCceEEEecCCCCcc-cceeecCCCcCCCCCEEEEEeccC-------------CCcceEEEEcccCEEEECccCC
Confidence 45777773 34444443321 11111 23334566566655422 2457899999999999988765
Q ss_pred CC-ceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeEE--EECCEEEEEec--------
Q 019186 148 VP-RAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGV--VIGGKVHVLHK-------- 216 (345)
Q Consensus 148 ~~-r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~--~~~~~iyv~gG-------- 216 (345)
.. ..+..++.-+..+|.+.. ...+...|+++.+=+.+-..|.. .-+.... ..++..++.--
T Consensus 80 g~~~~g~~~s~~~~~~~Yv~~-------~~~l~~vdL~T~e~~~vy~~p~~-~~g~gt~v~n~d~t~~~g~e~~~~d~~~ 151 (386)
T PF14583_consen 80 GDNTFGGFLSPDDRALYYVKN-------GRSLRRVDLDTLEERVVYEVPDD-WKGYGTWVANSDCTKLVGIEISREDWKP 151 (386)
T ss_dssp -B-TTT-EE-TTSSEEEEEET-------TTEEEEEETTT--EEEEEE--TT-EEEEEEEEE-TTSSEEEEEEEEGGG---
T ss_pred CCCccceEEecCCCeEEEEEC-------CCeEEEEECCcCcEEEEEECCcc-cccccceeeCCCccEEEEEEEeehhccC
Confidence 43 222223333556544421 13477788777765555555544 2111112 22333322100
Q ss_pred --------------CcceEEEEECCCCCeeeccCCCC--CCceEE-EcC--eEEEEeC------cEEEEecCCc--eEEe
Q 019186 217 --------------GLSTVQVLDHMGLGWTVEDYGWL--QGPMAI-VHD--SVYLMSH------GLIIKQHRDV--RKVV 269 (345)
Q Consensus 217 --------------~~~~i~~yd~~~~~W~~~~~~~~--~~~~~~-~~~--~l~~~~~------~~i~~~d~~~--W~~~ 269 (345)
..+.+...|+++++.+.+-.... .+.... .+. -+||..| ..|+..+.+. .+++
T Consensus 152 l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v 231 (386)
T PF14583_consen 152 LTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKV 231 (386)
T ss_dssp --SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EES
T ss_pred ccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceee
Confidence 55678888888888776633222 111111 122 3455555 3777777665 4444
Q ss_pred ccchhhcccceeEEEEECCeEEEEcceecCCCCcccccccCceeeeccCCCCCceeEcCCCC
Q 019186 270 ASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMT 331 (345)
Q Consensus 270 ~~~p~~~~r~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~v~~~~ 331 (345)
..-. ...-.+|-.-..+|..+.+=++...+ .-.-+..||+.+. .=+.+.+||
T Consensus 232 ~~~~-~~e~~gHEfw~~DG~~i~y~~~~~~~-------~~~~i~~~d~~t~--~~~~~~~~p 283 (386)
T PF14583_consen 232 HRRM-EGESVGHEFWVPDGSTIWYDSYTPGG-------QDFWIAGYDPDTG--ERRRLMEMP 283 (386)
T ss_dssp S----TTEEEEEEEE-TTSS-EEEEEEETTT---------EEEEEE-TTT----EEEEEEE-
T ss_pred ecCC-CCcccccccccCCCCEEEEEeecCCC-------CceEEEeeCCCCC--CceEEEeCC
Confidence 3222 13334454445566544442322222 1124667888876 323344444
No 172
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=73.65 E-value=58 Score=27.94 Aligned_cols=150 Identities=15% Similarity=0.171 Sum_probs=76.6
Q ss_pred cceeEEEEECCEEEEEcCCC-CCCCCCCCCCCCCcCcCceEEEeC---CCCCccc--CCCCCC-------CceeeeeeEe
Q 019186 92 LAHFGVVSTAGKLFVLGGGS-DAVDPLTGDQDGSFATNEVWSYDP---VTRQWSP--RASMLV-------PRAMFACCAL 158 (345)
Q Consensus 92 ~~~~~~~~~~~~lyv~GG~~-~~~~~~~~~~~~~~~~~~~~~yd~---~t~~W~~--~~~~~~-------~r~~~~~~~~ 158 (345)
-.+.+|.+++++||.+=-.. -.. ......+.|+- ....|+. ++..+. .-.-|+.|.+
T Consensus 75 yHCmSMGv~~NRLfa~iEtR~~a~----------~km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i 144 (367)
T PF12217_consen 75 YHCMSMGVVGNRLFAVIETRTVAS----------NKMVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATI 144 (367)
T ss_dssp EE-B-EEEETTEEEEEEEEEETTT------------EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-
T ss_pred eeeeeeeeecceeeEEEeehhhhh----------hhhhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEe
Confidence 34556888999999764321 111 12344455553 4566865 222222 2356788888
Q ss_pred CCeEEEEcCcCCCCCCCceEEE-EeCCCCce--------EeCCC-CCccCCCceeEEEECCEEEEEec------CcceEE
Q 019186 159 KEKIVVAGGFTSCRKSISQAEM-YDPEKDVW--------VPIPD-LHRTHNSACTGVVIGGKVHVLHK------GLSTVQ 222 (345)
Q Consensus 159 ~~~iyv~gG~~~~~~~~~~v~~-yd~~~~~W--------~~~~~-~~~~~~~~~~~~~~~~~iyv~gG------~~~~i~ 222 (345)
++.-|.+|=..+. ...+++-. |-+ +.| +.++. .... ....++-.+++.||+... ..+.+.
T Consensus 145 ~~~~fA~GyHnGD-~sPRe~G~~yfs--~~~~sp~~~vrr~i~sey~~~-AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~ 220 (367)
T PF12217_consen 145 DDNQFAVGYHNGD-VSPRELGFLYFS--DAFASPGVFVRRIIPSEYERN-ASEPCVKYYDGVLYLTTRGTLPTNPGSSLH 220 (367)
T ss_dssp SSS-EEEEEEE-S-SSS-EEEEEEET--TTTT-TT--EEEE--GGG-TT-EEEEEEEEETTEEEEEEEES-TTS---EEE
T ss_pred cCCceeEEeccCC-CCcceeeEEEec--ccccCCcceeeeechhhhccc-cccchhhhhCCEEEEEEcCcCCCCCcceee
Confidence 8888888754432 22333333 222 122 22222 1222 345566788999999853 345677
Q ss_pred EEECCCCCeeeccCCCC----CCceEEEcCeEEEEeC
Q 019186 223 VLDHMGLGWTVEDYGWL----QGPMAIVHDSVYLMSH 255 (345)
Q Consensus 223 ~yd~~~~~W~~~~~~~~----~~~~~~~~~~l~~~~~ 255 (345)
+-+.....|..+.-... ....+.+++.||+++.
T Consensus 221 rs~d~G~~w~slrfp~nvHhtnlPFakvgD~l~mFgs 257 (367)
T PF12217_consen 221 RSDDNGQNWSSLRFPNNVHHTNLPFAKVGDVLYMFGS 257 (367)
T ss_dssp EESSTTSS-EEEE-TT---SS---EEEETTEEEEEEE
T ss_pred eecccCCchhhccccccccccCCCceeeCCEEEEEec
Confidence 77777888987743322 5678899999999995
No 173
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=73.34 E-value=59 Score=27.95 Aligned_cols=125 Identities=15% Similarity=0.158 Sum_probs=70.0
Q ss_pred cCceEEEeCCCCC--cccCCCCCCCceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCC--ceEeCCCCCccCCCce
Q 019186 127 TNEVWSYDPVTRQ--WSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKD--VWVPIPDLHRTHNSAC 202 (345)
Q Consensus 127 ~~~~~~yd~~t~~--W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~ 202 (345)
+..+...|+.++. |+.+- ..|-...++++++. .|+|-+++. ++..+..++ -|.-+.-- . ....
T Consensus 32 s~~~~avd~~sG~~~We~il---g~RiE~sa~vvgdf-VV~GCy~g~------lYfl~~~tGs~~w~f~~~~--~-vk~~ 98 (354)
T KOG4649|consen 32 SGIVIAVDPQSGNLIWEAIL---GVRIECSAIVVGDF-VVLGCYSGG------LYFLCVKTGSQIWNFVILE--T-VKVR 98 (354)
T ss_pred CceEEEecCCCCcEEeehhh---CceeeeeeEEECCE-EEEEEccCc------EEEEEecchhheeeeeehh--h-hccc
Confidence 3456778898886 87653 34667777788887 566655543 677777776 36533211 1 1111
Q ss_pred eEEEECCEEEEEecCcceEEEEECCCCC--eeeccCC-CC-CCceEEEcCeEEEEeC-cEEEEecCC
Q 019186 203 TGVVIGGKVHVLHKGLSTVQVLDHMGLG--WTVEDYG-WL-QGPMAIVHDSVYLMSH-GLIIKQHRD 264 (345)
Q Consensus 203 ~~~~~~~~iyv~gG~~~~i~~yd~~~~~--W~~~~~~-~~-~~~~~~~~~~l~~~~~-~~i~~~d~~ 264 (345)
+.+..++.+..+|.....+++.|+++.. |...-.. .. .+.+...++.||+... +.+..-.++
T Consensus 99 a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~ 165 (354)
T KOG4649|consen 99 AQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKN 165 (354)
T ss_pred eEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccC
Confidence 2233344444445466778888988775 4322111 11 3334444777887754 555555544
No 174
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=71.51 E-value=45 Score=31.91 Aligned_cols=105 Identities=13% Similarity=0.081 Sum_probs=55.8
Q ss_pred EEEEEecCCCCeEEEEeCCCCCEEeCCCCCccccccceeEEEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCC
Q 019186 57 LLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPV 136 (345)
Q Consensus 57 ~l~v~gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~ 136 (345)
-||+.|. .+++|.+|...+.|-. |+...........+.- -+.|+++||. ...++.+|+.
T Consensus 147 Dly~~gs--g~evYRlNLEqGrfL~--P~~~~~~~lN~v~in~-~hgLla~Gt~----------------~g~VEfwDpR 205 (703)
T KOG2321|consen 147 DLYLVGS--GSEVYRLNLEQGRFLN--PFETDSGELNVVSINE-EHGLLACGTE----------------DGVVEFWDPR 205 (703)
T ss_pred cEEEeec--CcceEEEEcccccccc--ccccccccceeeeecC-ccceEEeccc----------------CceEEEecch
Confidence 3555553 5789999999998754 2222111122222221 3558888885 3468888888
Q ss_pred CCCccc-------CCCCCCCcee--eeeeEe-CCeEEEEcCcCCCCCCCceEEEEeCCCCc
Q 019186 137 TRQWSP-------RASMLVPRAM--FACCAL-KEKIVVAGGFTSCRKSISQAEMYDPEKDV 187 (345)
Q Consensus 137 t~~W~~-------~~~~~~~r~~--~~~~~~-~~~iyv~gG~~~~~~~~~~v~~yd~~~~~ 187 (345)
+++-.. +.+.|..-.. .++..+ ++-|-+.-|.+ ...+.+||+.+.+
T Consensus 206 ~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts-----~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 206 DKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS-----TGSVLIYDLRASK 261 (703)
T ss_pred hhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc-----CCcEEEEEcccCC
Confidence 765321 2223322222 222233 43454444443 2348999988755
No 175
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=70.05 E-value=1.2e+02 Score=30.17 Aligned_cols=172 Identities=11% Similarity=0.037 Sum_probs=83.0
Q ss_pred EEEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccCCCCCCCceeeeeeEeCCeEEEEcCcCCCCCCC
Q 019186 96 GVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSI 175 (345)
Q Consensus 96 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~~~ 175 (345)
++++.++.+.++.|. -..+-++|..|.+-.+ .++.. +-+++..+.+.-|++-|..+
T Consensus 378 sl~vS~d~~~~~Sga----------------~~SikiWn~~t~kciR--Ti~~~-y~l~~~Fvpgd~~Iv~G~k~----- 433 (888)
T KOG0306|consen 378 SLCVSSDSILLASGA----------------GESIKIWNRDTLKCIR--TITCG-YILASKFVPGDRYIVLGTKN----- 433 (888)
T ss_pred EEEeecCceeeeecC----------------CCcEEEEEccCcceeE--Eeccc-cEEEEEecCCCceEEEeccC-----
Confidence 466667777777664 2357778877665322 12222 44556666544444444332
Q ss_pred ceEEEEeCCCCceEeCCCCCccCCCceeEEEECCEEEEEecCcceEEEEECC--C------CCeeeccCCCC-------C
Q 019186 176 SQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHM--G------LGWTVEDYGWL-------Q 240 (345)
Q Consensus 176 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~i~~yd~~--~------~~W~~~~~~~~-------~ 240 (345)
.++++||..+..-.+.-+-..+ ....-....+++-++.||.-.++-.||.+ . ++.-.+..... -
T Consensus 434 Gel~vfdlaS~~l~Eti~AHdg-aIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL 512 (888)
T KOG0306|consen 434 GELQVFDLASASLVETIRAHDG-AIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVL 512 (888)
T ss_pred CceEEEEeehhhhhhhhhcccc-ceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEE
Confidence 2488999876543222111122 22222234466677777633444333321 1 11111111110 1
Q ss_pred CceEEEcCeEEEEeC--cEEEEecCCceEEeccchhhcccceeEEE------EECCeEEEEcceec
Q 019186 241 GPMAIVHDSVYLMSH--GLIIKQHRDVRKVVASASEFRRRIGFAMI------GMGDDIYVIGGVIG 298 (345)
Q Consensus 241 ~~~~~~~~~l~~~~~--~~i~~~d~~~W~~~~~~p~~~~r~~~~~~------~~~~~l~i~GG~~~ 298 (345)
+..+..||++.+++- +.+..|-.++-+- ....++|.+- ..+.++++.|+.+.
T Consensus 513 ~v~~Spdgk~LaVsLLdnTVkVyflDtlKF------flsLYGHkLPV~smDIS~DSklivTgSADK 572 (888)
T KOG0306|consen 513 CVSVSPDGKLLAVSLLDNTVKVYFLDTLKF------FLSLYGHKLPVLSMDISPDSKLIVTGSADK 572 (888)
T ss_pred EEEEcCCCcEEEEEeccCeEEEEEecceee------eeeecccccceeEEeccCCcCeEEeccCCC
Confidence 122234677777775 6666666555111 1233444432 23678888887654
No 176
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=68.61 E-value=82 Score=27.63 Aligned_cols=101 Identities=7% Similarity=0.081 Sum_probs=51.7
Q ss_pred CCCeEEEEeCCCCCEEeCCCCCccccccceeEEEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccCC
Q 019186 65 PENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPRA 144 (345)
Q Consensus 65 ~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~ 144 (345)
..+.+.+||..+++-...-..... -.+...-.+.....+.+... ...++-.+++.+|+.-+.-
T Consensus 34 ~dDsl~LYd~~~g~~~~ti~skky---G~~~~~Fth~~~~~i~sStk--------------~d~tIryLsl~dNkylRYF 96 (311)
T KOG1446|consen 34 EDDSLRLYDSLSGKQVKTINSKKY---GVDLACFTHHSNTVIHSSTK--------------EDDTIRYLSLHDNKYLRYF 96 (311)
T ss_pred CCCeEEEEEcCCCceeeEeecccc---cccEEEEecCCceEEEccCC--------------CCCceEEEEeecCceEEEc
Confidence 356899999998864433222211 11222223333444444321 1346777888888764432
Q ss_pred CCCCCc-eeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCceE
Q 019186 145 SMLVPR-AMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWV 189 (345)
Q Consensus 145 ~~~~~r-~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~ 189 (345)
+-...+ ....+.- .+..|+-++.+. .+..+|.....-+
T Consensus 97 ~GH~~~V~sL~~sP-~~d~FlS~S~D~------tvrLWDlR~~~cq 135 (311)
T KOG1446|consen 97 PGHKKRVNSLSVSP-KDDTFLSSSLDK------TVRLWDLRVKKCQ 135 (311)
T ss_pred CCCCceEEEEEecC-CCCeEEecccCC------eEEeeEecCCCCc
Confidence 211111 1122222 346778777653 4888888765544
No 177
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=68.34 E-value=74 Score=27.04 Aligned_cols=190 Identities=12% Similarity=0.089 Sum_probs=104.1
Q ss_pred eEEEEeCCCCCEEeCCCCCccccccceeEEEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCC----CCCcccC
Q 019186 68 LWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPV----TRQWSPR 143 (345)
Q Consensus 68 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~----t~~W~~~ 143 (345)
.+.......+.|.+= |.+ + +.++|++... ....+.-|... .+.+...
T Consensus 11 ~~~~~~~~~GsWmrD---pl~---~--------~~r~~~~~~~---------------~~~~l~E~~~~~~~~~~~~~~~ 61 (249)
T KOG3545|consen 11 TVKTAGPRFGAWMRD---PLP---A--------DDRIYVMNYF---------------DGLMLTEYTNLEDFKRGRKAEK 61 (249)
T ss_pred EEEeeccccceeecC---CCc---c--------cCceEEeccc---------------cCceEEEeccHHHhhccCcceE
Confidence 344555666777652 221 2 6788888443 23445556552 2334444
Q ss_pred CCCCCCceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCc---eEeCCCCCcc--------CCCceeEEEECCEEE
Q 019186 144 ASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDV---WVPIPDLHRT--------HNSACTGVVIGGKVH 212 (345)
Q Consensus 144 ~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~---W~~~~~~~~~--------~~~~~~~~~~~~~iy 212 (345)
=.+|..-.+.+.++++|.+|.-... .+.+..||.++.. |+.++.+... .....-.++.++-|+
T Consensus 62 ~~lp~~~~gTg~VVynGs~yynk~~------t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLW 135 (249)
T KOG3545|consen 62 YRLPYSWDGTGHVVYNGSLYYNKAG------TRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLW 135 (249)
T ss_pred EeCCCCccccceEEEcceEEeeccC------CcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceeccccee
Confidence 4566666778888999999887643 3558899988843 4444432211 011122344455567
Q ss_pred EEec-----CcceEEEEECC----CCCeeeccCCCCCCceEEEcCeEEEEeC-----cEE-EEecCCc-eEEeccchhhc
Q 019186 213 VLHK-----GLSTVQVLDHM----GLGWTVEDYGWLQGPMAIVHDSVYLMSH-----GLI-IKQHRDV-RKVVASASEFR 276 (345)
Q Consensus 213 v~gG-----~~~~i~~yd~~----~~~W~~~~~~~~~~~~~~~~~~l~~~~~-----~~i-~~~d~~~-W~~~~~~p~~~ 276 (345)
++-- ....+.+.|+. ..+|..--+......+-.+-|.+|++.. ..| +.||..+ =.+-..+|. .
T Consensus 136 viYat~~~~g~iv~skLdp~tl~~e~tW~T~~~k~~~~~aF~iCGvLY~v~S~~~~~~~i~yaydt~~~~~~~~~ipf-~ 214 (249)
T KOG3545|consen 136 VIYATPENAGTIVLSKLDPETLEVERTWNTTLPKRSAGNAFMICGVLYVVHSYNCTHTQISYAYDTTTGTQERIDLPF-P 214 (249)
T ss_pred EEecccccCCcEEeeccCHHHhheeeeeccccCCCCcCceEEEeeeeEEEeccccCCceEEEEEEcCCCceecccccc-c
Confidence 6632 22223566663 3467443233334555667788999887 444 7888876 444445552 2
Q ss_pred cccee-EEEEE---CCeEEEE
Q 019186 277 RRIGF-AMIGM---GDDIYVI 293 (345)
Q Consensus 277 ~r~~~-~~~~~---~~~l~i~ 293 (345)
.++.+ ++... +.++|++
T Consensus 215 N~y~~~~~idYNP~D~~LY~w 235 (249)
T KOG3545|consen 215 NPYSYATMIDYNPRDRRLYAW 235 (249)
T ss_pred chhhhhhccCCCcccceeeEe
Confidence 33333 22222 5678876
No 178
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=68.24 E-value=57 Score=28.70 Aligned_cols=105 Identities=11% Similarity=0.158 Sum_probs=56.4
Q ss_pred CcEEEEEecCCCCeEEEEeCCCCCEEeCCCCCccccccceeEEEE--E--CCEEEEEcCCCCCCCCCCCCCCCCcCcCce
Q 019186 55 ENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVS--T--AGKLFVLGGGSDAVDPLTGDQDGSFATNEV 130 (345)
Q Consensus 55 ~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~--~--~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~ 130 (345)
++.+.+.| .....+.+||..+-+.-.-+. |.. ....++.. + .++|||.|..++ .+
T Consensus 227 sGefllvg-TdHp~~rlYdv~T~Qcfvsan-Pd~---qht~ai~~V~Ys~t~~lYvTaSkDG----------------~I 285 (430)
T KOG0640|consen 227 SGEFLLVG-TDHPTLRLYDVNTYQCFVSAN-PDD---QHTGAITQVRYSSTGSLYVTASKDG----------------AI 285 (430)
T ss_pred CCceEEEe-cCCCceeEEeccceeEeeecC-ccc---ccccceeEEEecCCccEEEEeccCC----------------cE
Confidence 34444444 456788899998876544333 332 11112221 2 578999987632 47
Q ss_pred EEEeCCCCCccc-CCCCCCCceeeeeeEe--CCeEEEEcCcCCCCCCCceEEEEeCCCCc
Q 019186 131 WSYDPVTRQWSP-RASMLVPRAMFACCAL--KEKIVVAGGFTSCRKSISQAEMYDPEKDV 187 (345)
Q Consensus 131 ~~yd~~t~~W~~-~~~~~~~r~~~~~~~~--~~~iyv~gG~~~~~~~~~~v~~yd~~~~~ 187 (345)
-+||-.+++... +..- ...+.-+.+++ |++..+..|.+. .+..+.+.+++
T Consensus 286 klwDGVS~rCv~t~~~A-H~gsevcSa~Ftkn~kyiLsSG~DS------~vkLWEi~t~R 338 (430)
T KOG0640|consen 286 KLWDGVSNRCVRTIGNA-HGGSEVCSAVFTKNGKYILSSGKDS------TVKLWEISTGR 338 (430)
T ss_pred EeeccccHHHHHHHHhh-cCCceeeeEEEccCCeEEeecCCcc------eeeeeeecCCc
Confidence 788888876433 2221 11222222222 666666666542 35666666665
No 179
>PRK01742 tolB translocation protein TolB; Provisional
Probab=67.86 E-value=1.1e+02 Score=28.62 Aligned_cols=141 Identities=9% Similarity=-0.012 Sum_probs=68.5
Q ss_pred CCeEEEEeCCCCCEEeCCCCCccccccceeEEEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccCCC
Q 019186 66 ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPRAS 145 (345)
Q Consensus 66 ~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~ 145 (345)
...++.+|..+++-+.+...+.. .......-+++.++++...+ ...++|.+|..+++.+++..
T Consensus 227 ~~~i~i~dl~tg~~~~l~~~~g~----~~~~~wSPDG~~La~~~~~~-------------g~~~Iy~~d~~~~~~~~lt~ 289 (429)
T PRK01742 227 KSQLVVHDLRSGARKVVASFRGH----NGAPAFSPDGSRLAFASSKD-------------GVLNIYVMGANGGTPSQLTS 289 (429)
T ss_pred CcEEEEEeCCCCceEEEecCCCc----cCceeECCCCCEEEEEEecC-------------CcEEEEEEECCCCCeEeecc
Confidence 45788899888776666544321 11112223555444432211 12468899998877665543
Q ss_pred CCCCceeeeeeEeCCe-EEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeEEEECCE-EEEEecCcceEEE
Q 019186 146 MLVPRAMFACCALKEK-IVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGK-VHVLHKGLSTVQV 223 (345)
Q Consensus 146 ~~~~r~~~~~~~~~~~-iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-iyv~gG~~~~i~~ 223 (345)
..... ......-+++ |+......+ ...++.+|..+..-+.+. .. .. .....-+++ |++.++ ..+..
T Consensus 290 ~~~~~-~~~~wSpDG~~i~f~s~~~g----~~~I~~~~~~~~~~~~l~---~~-~~-~~~~SpDG~~ia~~~~--~~i~~ 357 (429)
T PRK01742 290 GAGNN-TEPSWSPDGQSILFTSDRSG----SPQVYRMSASGGGASLVG---GR-GY-SAQISADGKTLVMING--DNVVK 357 (429)
T ss_pred CCCCc-CCEEECCCCCEEEEEECCCC----CceEEEEECCCCCeEEec---CC-CC-CccCCCCCCEEEEEcC--CCEEE
Confidence 22111 1111122444 444332221 235666666554333331 11 11 112233444 544442 55777
Q ss_pred EECCCCCeeecc
Q 019186 224 LDHMGLGWTVED 235 (345)
Q Consensus 224 yd~~~~~W~~~~ 235 (345)
+|+.+++++.+.
T Consensus 358 ~Dl~~g~~~~lt 369 (429)
T PRK01742 358 QDLTSGSTEVLS 369 (429)
T ss_pred EECCCCCeEEec
Confidence 899888887653
No 180
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=66.94 E-value=96 Score=27.80 Aligned_cols=40 Identities=25% Similarity=0.447 Sum_probs=37.4
Q ss_pred cCCCCCh----HHHHHHhhccCCCcchhhHHHhhHHHHHhhcCh
Q 019186 3 ELIEGLP----DAVALRCLARVPFFLHPKLELVSRSWRAAIRSP 42 (345)
Q Consensus 3 ~~~~~lp----~~~~~~~l~~~p~~~~~~~~~~~~~w~~~~~~~ 42 (345)
.+|+.|| ++++++||+.+...+++....+|++|++++..+
T Consensus 73 DFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg 116 (499)
T KOG0281|consen 73 DFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDG 116 (499)
T ss_pred HHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccc
Confidence 5678899 999999999999999999999999999998887
No 181
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=66.36 E-value=1.1e+02 Score=28.13 Aligned_cols=217 Identities=9% Similarity=-0.068 Sum_probs=93.4
Q ss_pred CcEEEEEec-CCCCeEEEEeCCCCCEEeCCCCCccccccceeEEEEECCEEEEE-cCCCCCCCCCCCCCCCCcCcCceEE
Q 019186 55 ENLLCVCAF-DPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVL-GGGSDAVDPLTGDQDGSFATNEVWS 132 (345)
Q Consensus 55 ~~~l~v~gg-~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~lyv~-GG~~~~~~~~~~~~~~~~~~~~~~~ 132 (345)
+.+|+..+- .....++..|..+++-.+|..-+.. ......++.-+..+|.+ .+ ..++.
T Consensus 47 G~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~--~~~g~~~s~~~~~~~Yv~~~------------------~~l~~ 106 (386)
T PF14583_consen 47 GRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGD--NTFGGFLSPDDRALYYVKNG------------------RSLRR 106 (386)
T ss_dssp S-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B---TTT-EE-TTSSEEEEEETT------------------TEEEE
T ss_pred CCEEEEEeccCCCcceEEEEcccCEEEECccCCCC--CccceEEecCCCeEEEEECC------------------CeEEE
Confidence 434443332 3467899999999999999886643 12222233335555444 33 36889
Q ss_pred EeCCCCCcccCCCCCCCceeeeeeEe--CCeEEEEcCcC---C-------------CCCCCceEEEEeCCCCceEeCCCC
Q 019186 133 YDPVTRQWSPRASMLVPRAMFACCAL--KEKIVVAGGFT---S-------------CRKSISQAEMYDPEKDVWVPIPDL 194 (345)
Q Consensus 133 yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~gG~~---~-------------~~~~~~~v~~yd~~~~~W~~~~~~ 194 (345)
.|+.|.+=+.+-..|..-......+. ++..++.--.. . ..+....+..-|..+.+.+.+-.-
T Consensus 107 vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~ 186 (386)
T PF14583_consen 107 VDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFED 186 (386)
T ss_dssp EETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEE
T ss_pred EECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEec
Confidence 99988875555455544443333333 23332221000 0 012345677777777776654110
Q ss_pred CccCCCceeEE-EECCEEEEEec------CcceEEEEECCCCCeeeccCCCC----CCceEEEcCeEEEEeC-------c
Q 019186 195 HRTHNSACTGV-VIGGKVHVLHK------GLSTVQVLDHMGLGWTVEDYGWL----QGPMAIVHDSVYLMSH-------G 256 (345)
Q Consensus 195 ~~~~~~~~~~~-~~~~~iyv~gG------~~~~i~~yd~~~~~W~~~~~~~~----~~~~~~~~~~l~~~~~-------~ 256 (345)
.. -.+|..+ ..+..+..++- ....|+..+........+..... .+-.=..+|..+.+.. .
T Consensus 187 ~~--wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~ 264 (386)
T PF14583_consen 187 TD--WLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDF 264 (386)
T ss_dssp SS---EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--E
T ss_pred Cc--cccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCce
Confidence 00 0111111 12444555532 23467777776554444432211 1222222443333322 4
Q ss_pred EEEEecCCc--eEEeccchhhcccceeEEEEECCeEEEEccee
Q 019186 257 LIIKQHRDV--RKVVASASEFRRRIGFAMIGMGDDIYVIGGVI 297 (345)
Q Consensus 257 ~i~~~d~~~--W~~~~~~p~~~~r~~~~~~~~~~~l~i~GG~~ 297 (345)
.+..+|+++ -+.+..+| ...|-+...++++++-=|.+
T Consensus 265 ~i~~~d~~t~~~~~~~~~p----~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 265 WIAGYDPDTGERRRLMEMP----WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp EEEEE-TTT--EEEEEEE-----SEEEEEE-TTSSEEEEEE--
T ss_pred EEEeeCCCCCCceEEEeCC----ceeeeEEcCCCCEEEecCCC
Confidence 677888887 22233333 45677778899998875543
No 182
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=66.08 E-value=94 Score=27.47 Aligned_cols=109 Identities=12% Similarity=-0.009 Sum_probs=59.1
Q ss_pred CCceEeCCCCCcc-CCCceeEEEECCEEEEEecCcceEEEEECCCCC-eeeccCCCCCCceEEEcCeE---EEEeC---c
Q 019186 185 KDVWVPIPDLHRT-HNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLG-WTVEDYGWLQGPMAIVHDSV---YLMSH---G 256 (345)
Q Consensus 185 ~~~W~~~~~~~~~-~~~~~~~~~~~~~iyv~gG~~~~i~~yd~~~~~-W~~~~~~~~~~~~~~~~~~l---~~~~~---~ 256 (345)
+.+|+.++.+... +....+++.+++...+.||.-.+|..||+.++. -..+-.......++.....+ .++.+ +
T Consensus 28 s~~~~l~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG 107 (362)
T KOG0294|consen 28 SVKPTLKPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDG 107 (362)
T ss_pred ccceeeeccccccccccceeEEEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCC
Confidence 4567766665444 133445566777777777777889999997663 22221110111112222211 22222 7
Q ss_pred EEEEecCCceEEeccchhhcccceeEEEEECCeEEEE
Q 019186 257 LIIKQHRDVRKVVASASEFRRRIGFAMIGMGDDIYVI 293 (345)
Q Consensus 257 ~i~~~d~~~W~~~~~~p~~~~r~~~~~~~~~~~l~i~ 293 (345)
.|..++.+.|..+..+.....+..+-.+.--++|-+.
T Consensus 108 ~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALs 144 (362)
T KOG0294|consen 108 HIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALS 144 (362)
T ss_pred cEEEEEcCCeEEeeeecccccccceeEecCCCceEEE
Confidence 8899999999888766533344444334445555444
No 183
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=65.69 E-value=95 Score=27.28 Aligned_cols=98 Identities=14% Similarity=-0.013 Sum_probs=47.3
Q ss_pred CCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeEEEECCE---EEEEecCcceEEEEECCCCCeeecc
Q 019186 159 KEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGK---VHVLHKGLSTVQVLDHMGLGWTVED 235 (345)
Q Consensus 159 ~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~---iyv~gG~~~~i~~yd~~~~~W~~~~ 235 (345)
++.....|+.++ .+..||+++++=..++.-..+-+ ++..+++. +.+.|..-.++-.+|+++..=-..-
T Consensus 83 dgskVf~g~~Dk------~~k~wDL~S~Q~~~v~~Hd~pvk---t~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~ 153 (347)
T KOG0647|consen 83 DGSKVFSGGCDK------QAKLWDLASGQVSQVAAHDAPVK---TCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATL 153 (347)
T ss_pred CCceEEeeccCC------ceEEEEccCCCeeeeeeccccee---EEEEecCCCcceeEecccccceeecccCCCCeeeee
Confidence 455555566654 48999999998776654333311 12223332 3444445555666666533211111
Q ss_pred CCCCCCceEEEcCeEEEEe--CcEEEEecCCc
Q 019186 236 YGWLQGPMAIVHDSVYLMS--HGLIIKQHRDV 265 (345)
Q Consensus 236 ~~~~~~~~~~~~~~l~~~~--~~~i~~~d~~~ 265 (345)
.+|....++-+...+.+++ +..|..|+.++
T Consensus 154 ~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n 185 (347)
T KOG0647|consen 154 QLPERVYAADVLYPMAVVATAERHIAVYNLEN 185 (347)
T ss_pred eccceeeehhccCceeEEEecCCcEEEEEcCC
Confidence 1222222222222222222 27788888755
No 184
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=65.37 E-value=1.6e+02 Score=29.92 Aligned_cols=27 Identities=4% Similarity=-0.092 Sum_probs=19.8
Q ss_pred cCeEEEEeC-cEEEEecCCceEEeccch
Q 019186 247 HDSVYLMSH-GLIIKQHRDVRKVVASAS 273 (345)
Q Consensus 247 ~~~l~~~~~-~~i~~~d~~~W~~~~~~p 273 (345)
+|.+.+..- ..|..|+.+.|.....+.
T Consensus 200 ~g~la~~~~d~~Vkvy~r~~we~~f~Lr 227 (933)
T KOG1274|consen 200 GGTLAVPPVDNTVKVYSRKGWELQFKLR 227 (933)
T ss_pred CCeEEeeccCCeEEEEccCCceeheeec
Confidence 355555554 789999999999886654
No 185
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=65.34 E-value=1.1e+02 Score=28.05 Aligned_cols=132 Identities=8% Similarity=-0.043 Sum_probs=69.1
Q ss_pred eCCeEEEEcCcCCCCCCCceEEEEeCCCCceEeC-CCCCccCCCceeEEEECCEEEEEecCcceEEEEECCCCCe-eecc
Q 019186 158 LKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPI-PDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGW-TVED 235 (345)
Q Consensus 158 ~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~-~~~~~~~~~~~~~~~~~~~iyv~gG~~~~i~~yd~~~~~W-~~~~ 235 (345)
.+|.+..-||.+.. .-++|..+.+-..+ ..-..+ .......-+|.....|+.-+++-++|++..+= ..++
T Consensus 313 ~DGSL~~tGGlD~~------~RvWDlRtgr~im~L~gH~k~--I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ip 384 (459)
T KOG0272|consen 313 PDGSLAATGGLDSL------GRVWDLRTGRCIMFLAGHIKE--ILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIP 384 (459)
T ss_pred CCCceeeccCccch------hheeecccCcEEEEecccccc--eeeEeECCCceEEeecCCCCcEEEeeecccccceecc
Confidence 48999999998754 35677777664422 111111 12222344778777887667777777765432 2222
Q ss_pred CCCC-CCceEE--EcCeEEEEeC--cEEEEecCCceEEeccchhhcccceeEEEEECCeEEEEccee
Q 019186 236 YGWL-QGPMAI--VHDSVYLMSH--GLIIKQHRDVRKVVASASEFRRRIGFAMIGMGDDIYVIGGVI 297 (345)
Q Consensus 236 ~~~~-~~~~~~--~~~~l~~~~~--~~i~~~d~~~W~~~~~~p~~~~r~~~~~~~~~~~l~i~GG~~ 297 (345)
.... ...+.. ..|++.+..+ +.+..+...+|+.++.+..-..+....-...++..++.++++
T Consensus 385 AH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~D 451 (459)
T KOG0272|consen 385 AHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFD 451 (459)
T ss_pred cccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccC
Confidence 1111 111111 2455555554 677778888899887665322222221222244455555543
No 186
>PTZ00420 coronin; Provisional
Probab=65.29 E-value=1.4e+02 Score=29.12 Aligned_cols=61 Identities=16% Similarity=0.181 Sum_probs=34.7
Q ss_pred eEEEEcCcCCCCCCCceEEEEeCCCCce-EeCCCCCccCCCceeEEEECCEEEEEecCcceEEEEECCCCC
Q 019186 161 KIVVAGGFTSCRKSISQAEMYDPEKDVW-VPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLG 230 (345)
Q Consensus 161 ~iyv~gG~~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~i~~yd~~~~~ 230 (345)
.+++.+|.+ ..+.+||..+.+= ..+. .+. .........++.+++.++....+..||+++++
T Consensus 139 ~iLaSgS~D------gtIrIWDl~tg~~~~~i~-~~~--~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~ 200 (568)
T PTZ00420 139 YIMCSSGFD------SFVNIWDIENEKRAFQIN-MPK--KLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE 200 (568)
T ss_pred eEEEEEeCC------CeEEEEECCCCcEEEEEe-cCC--cEEEEEECCCCCEEEEEecCCEEEEEECCCCc
Confidence 344555554 2488999887651 1111 111 11112223467777777666789999998764
No 187
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=64.73 E-value=1.7e+02 Score=29.81 Aligned_cols=168 Identities=12% Similarity=0.043 Sum_probs=90.2
Q ss_pred eeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCc--eEeCCCCCccC---C-Ccee------------------EEEE
Q 019186 152 MFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDV--WVPIPDLHRTH---N-SACT------------------GVVI 207 (345)
Q Consensus 152 ~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~---~-~~~~------------------~~~~ 207 (345)
..+-.++++.+|+.... +.+..+|.+|.+ |+.-...+... . ..-+ .+.+
T Consensus 187 e~TPlvvgg~lYv~t~~-------~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~ 259 (764)
T TIGR03074 187 QATPLKVGDTLYLCTPH-------NKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADC 259 (764)
T ss_pred ccCCEEECCEEEEECCC-------CeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCccccccccccccccc
Confidence 34556789999998542 347778877653 76443322110 0 0000 1234
Q ss_pred CCEEEEEecCcceEEEEECCCCC--eeec-----------cCCC-----CCCceEEEcCeEEEEeC-----------cEE
Q 019186 208 GGKVHVLHKGLSTVQVLDHMGLG--WTVE-----------DYGW-----LQGPMAIVHDSVYLMSH-----------GLI 258 (345)
Q Consensus 208 ~~~iyv~gG~~~~i~~yd~~~~~--W~~~-----------~~~~-----~~~~~~~~~~~l~~~~~-----------~~i 258 (345)
+++||+-. ....++++|.++++ |.-- ...+ ...+-++.++.+|+-+. +.+
T Consensus 260 ~~rV~~~T-~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 260 ARRIILPT-SDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CCEEEEec-CCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence 55777654 45678888887764 5321 1111 13445667888777532 578
Q ss_pred EEecCCc----eEEeccchhhc------c---ccee---EEEEE---CCeEEEEcceecCC---CCc--ccccccCceee
Q 019186 259 IKQHRDV----RKVVASASEFR------R---RIGF---AMIGM---GDDIYVIGGVIGPD---RWN--WDIKPMSDVDV 314 (345)
Q Consensus 259 ~~~d~~~----W~~~~~~p~~~------~---r~~~---~~~~~---~~~l~i~GG~~~~~---~~~--~~~~~~~~v~~ 314 (345)
..||.++ |+.-..-|... . +... ....+ .+.+|+--|..... ..+ .+-.+.+.+..
T Consensus 339 ~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvA 418 (764)
T TIGR03074 339 RAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVA 418 (764)
T ss_pred EEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEE
Confidence 9999887 77542211100 0 0000 11222 24566644432211 111 12357789999
Q ss_pred eccCCCCCceeEc
Q 019186 315 LTVGAERPTWRQV 327 (345)
Q Consensus 315 yd~~~~~~~W~~v 327 (345)
.|+++.+..|...
T Consensus 419 LD~~TGk~~W~~Q 431 (764)
T TIGR03074 419 LDATTGKERWVFQ 431 (764)
T ss_pred EeCCCCceEEEec
Confidence 9999998889764
No 188
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=64.52 E-value=1e+02 Score=27.26 Aligned_cols=218 Identities=14% Similarity=0.129 Sum_probs=112.8
Q ss_pred CcEEEEEecCCCCeEEEEeCCCCCEEe-CCCCCccccccceeEEEEECCE-EEEEcCCCCCCCCCCCCCCCCcCcCceEE
Q 019186 55 ENLLCVCAFDPENLWQLYDPLRDLWIT-LPVLPSKIRHLAHFGVVSTAGK-LFVLGGGSDAVDPLTGDQDGSFATNEVWS 132 (345)
Q Consensus 55 ~~~l~v~gg~~~~~~~~yd~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~-lyv~GG~~~~~~~~~~~~~~~~~~~~~~~ 132 (345)
.....+|+-.+-.-..+||+.+++-.. +.+.+.. ....|++.+-+|+ ||..=+..+ ...-.+-+
T Consensus 16 ~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gR--HFyGHg~fs~dG~~LytTEnd~~------------~g~G~IgV 81 (305)
T PF07433_consen 16 RPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGR--HFYGHGVFSPDGRLLYTTENDYE------------TGRGVIGV 81 (305)
T ss_pred CCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCC--EEecCEEEcCCCCEEEEeccccC------------CCcEEEEE
Confidence 678888888888888999999987543 3332222 2345566665665 444433221 13556888
Q ss_pred EeCCCCCcccCCCCCCC-ceeeeeeEe-CC-eEEE-EcCcCCC---CC-------CCceEEEEeCCCCceEeCCCCCcc-
Q 019186 133 YDPVTRQWSPRASMLVP-RAMFACCAL-KE-KIVV-AGGFTSC---RK-------SISQAEMYDPEKDVWVPIPDLHRT- 197 (345)
Q Consensus 133 yd~~t~~W~~~~~~~~~-r~~~~~~~~-~~-~iyv-~gG~~~~---~~-------~~~~v~~yd~~~~~W~~~~~~~~~- 197 (345)
||.. ++.+++...+.. .--|-+... ++ .|.| -||.... ++ ...++-..|..+.+-..--.+|..
T Consensus 82 yd~~-~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~ 160 (305)
T PF07433_consen 82 YDAA-RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDL 160 (305)
T ss_pred EECc-CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccc
Confidence 9997 677777665533 222334343 34 3333 3665422 11 123566677777764333223322
Q ss_pred --CCCceeEEEECCEEEEEec-----------------CcceEEEEECCCCCeeeccCCCCCCceEEE-cCeEEEEeC--
Q 019186 198 --HNSACTGVVIGGKVHVLHK-----------------GLSTVQVLDHMGLGWTVEDYGWLQGPMAIV-HDSVYLMSH-- 255 (345)
Q Consensus 198 --~~~~~~~~~~~~~iyv~gG-----------------~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~-~~~l~~~~~-- 255 (345)
....|-++.-+|. .++|. ....+..++.....|..+... ..+++.. ++.++.+..
T Consensus 161 ~~lSiRHLa~~~~G~-V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y--~gSIa~~~~g~~ia~tsPr 237 (305)
T PF07433_consen 161 HQLSIRHLAVDGDGT-VAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGY--IGSIAADRDGRLIAVTSPR 237 (305)
T ss_pred cccceeeEEecCCCc-EEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCc--eEEEEEeCCCCEEEEECCC
Confidence 0111222222333 33332 111133333334445443221 2233332 444555554
Q ss_pred -cEEEEecCCc--eEEeccchhhcccceeEEEEECCeEEEEcc
Q 019186 256 -GLIIKQHRDV--RKVVASASEFRRRIGFAMIGMGDDIYVIGG 295 (345)
Q Consensus 256 -~~i~~~d~~~--W~~~~~~p~~~~r~~~~~~~~~~~l~i~GG 295 (345)
+.+..+|..+ |.....++ ..++++..++..++..|
T Consensus 238 Gg~~~~~d~~tg~~~~~~~l~-----D~cGva~~~~~f~~ssG 275 (305)
T PF07433_consen 238 GGRVAVWDAATGRLLGSVPLP-----DACGVAPTDDGFLVSSG 275 (305)
T ss_pred CCEEEEEECCCCCEeeccccC-----ceeeeeecCCceEEeCC
Confidence 7788888777 66666555 45777877777555555
No 189
>PTZ00421 coronin; Provisional
Probab=63.79 E-value=1.4e+02 Score=28.56 Aligned_cols=150 Identities=13% Similarity=0.146 Sum_probs=69.8
Q ss_pred EEEEecCCCCeEEEEeCCCCCEEeCCCCCccccccceeEEEEE-CCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCC
Q 019186 58 LCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVST-AGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPV 136 (345)
Q Consensus 58 l~v~gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~ 136 (345)
+++.|+. ...+.++|..+++-.. .+... ...-.+++.. ++.+++.|+. ...+.+||+.
T Consensus 140 iLaSgs~-DgtVrIWDl~tg~~~~--~l~~h--~~~V~sla~spdG~lLatgs~----------------Dg~IrIwD~r 198 (493)
T PTZ00421 140 VLASAGA-DMVVNVWDVERGKAVE--VIKCH--SDQITSLEWNLDGSLLCTTSK----------------DKKLNIIDPR 198 (493)
T ss_pred EEEEEeC-CCEEEEEECCCCeEEE--EEcCC--CCceEEEEEECCCCEEEEecC----------------CCEEEEEECC
Confidence 4444432 4568889988764321 11111 0112233332 5677777765 2468889998
Q ss_pred CCCcc-cCCCCCCCceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCc--eEeCCCCCccCCCceeEEEE--CCEE
Q 019186 137 TRQWS-PRASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDV--WVPIPDLHRTHNSACTGVVI--GGKV 211 (345)
Q Consensus 137 t~~W~-~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~--~~~i 211 (345)
+++-. .+......+........++..++..|.+. .....+.+||..+.. .... .... ........+ ++.+
T Consensus 199 sg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~--s~Dr~VklWDlr~~~~p~~~~-~~d~--~~~~~~~~~d~d~~~ 273 (493)
T PTZ00421 199 DGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSK--SQQRQIMLWDTRKMASPYSTV-DLDQ--SSALFIPFFDEDTNL 273 (493)
T ss_pred CCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCC--CCCCeEEEEeCCCCCCceeEe-ccCC--CCceEEEEEcCCCCE
Confidence 76521 11111111111111112333334444332 113568999987543 1111 1111 111112222 4555
Q ss_pred EEEec-CcceEEEEECCCCCeee
Q 019186 212 HVLHK-GLSTVQVLDHMGLGWTV 233 (345)
Q Consensus 212 yv~gG-~~~~i~~yd~~~~~W~~ 233 (345)
+++|| ....|..||..+++...
T Consensus 274 L~lggkgDg~Iriwdl~~~~~~~ 296 (493)
T PTZ00421 274 LYIGSKGEGNIRCFELMNERLTF 296 (493)
T ss_pred EEEEEeCCCeEEEEEeeCCceEE
Confidence 55555 46778899998776543
No 190
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=63.50 E-value=1.5e+02 Score=28.75 Aligned_cols=169 Identities=13% Similarity=0.144 Sum_probs=84.7
Q ss_pred cCceEEEeCCCCCcccCCCCCCCceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeEEE
Q 019186 127 TNEVWSYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVV 206 (345)
Q Consensus 127 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~ 206 (345)
-+++.+++..+++-..+-. ..-..-..+.+++.+.+.|..++ .+-+||+.+.+-- ..+... ........
T Consensus 310 D~tVkVW~v~n~~~l~l~~--~h~~~V~~v~~~~~~lvsgs~d~------~v~VW~~~~~~cl--~sl~gH-~~~V~sl~ 378 (537)
T KOG0274|consen 310 DNTVKVWDVTNGACLNLLR--GHTGPVNCVQLDEPLLVSGSYDG------TVKVWDPRTGKCL--KSLSGH-TGRVYSLI 378 (537)
T ss_pred CceEEEEeccCcceEEEec--cccccEEEEEecCCEEEEEecCc------eEEEEEhhhceee--eeecCC-cceEEEEE
Confidence 4678889887665332211 01111223344677777776653 4889998865533 222222 11222335
Q ss_pred ECC-EEEEEecCcceEEEEECCCCCeeeccCCCC---CCceEEEcCeEEEEeC--cEEEEecCCceEEeccchhhcccce
Q 019186 207 IGG-KVHVLHKGLSTVQVLDHMGLGWTVEDYGWL---QGPMAIVHDSVYLMSH--GLIIKQHRDVRKVVASASEFRRRIG 280 (345)
Q Consensus 207 ~~~-~iyv~gG~~~~i~~yd~~~~~W~~~~~~~~---~~~~~~~~~~l~~~~~--~~i~~~d~~~W~~~~~~p~~~~r~~ 280 (345)
+++ ..++-|+.-..|..+|+.+.. +.+..... ........+++++-+. +.|..+|.++-+.+..+... +...
T Consensus 379 ~~~~~~~~Sgs~D~~IkvWdl~~~~-~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~ 456 (537)
T KOG0274|consen 379 VDSENRLLSGSLDTTIKVWDLRTKR-KCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGG 456 (537)
T ss_pred ecCcceEEeeeeccceEeecCCchh-hhhhhhcCCcccccccccccceeEeccccccEEEeecccCceeeeeccC-Cccc
Confidence 566 666666656778899988774 11111111 1111223445555554 66777777663444333311 1122
Q ss_pred eEEEEECCeEEEEcceecCCCCcccccccCceeeeccCCC
Q 019186 281 FAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE 320 (345)
Q Consensus 281 ~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~yd~~~~ 320 (345)
-.+...++..++.++.++ .+..||+.+.
T Consensus 457 v~~l~~~~~~il~s~~~~------------~~~l~dl~~~ 484 (537)
T KOG0274|consen 457 VSALALGKEEILCSSDDG------------SVKLWDLRSG 484 (537)
T ss_pred EEEeecCcceEEEEecCC------------eeEEEecccC
Confidence 222333346666666443 3556666555
No 191
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=62.91 E-value=98 Score=26.47 Aligned_cols=160 Identities=11% Similarity=0.015 Sum_probs=76.9
Q ss_pred CceEEEeCCCCCcccCCCCCCCceeeeeeE--eCCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeEE
Q 019186 128 NEVWSYDPVTRQWSPRASMLVPRAMFACCA--LKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGV 205 (345)
Q Consensus 128 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~--~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~ 205 (345)
..+-.||.+++.=..+......+..-+++. .+|+-..-||.++ .+-++|...-+-++.-..+.+ -..++
T Consensus 61 qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDg------t~kIWdlR~~~~qR~~~~~sp---Vn~vv 131 (311)
T KOG0315|consen 61 QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDG------TVKIWDLRSLSCQRNYQHNSP---VNTVV 131 (311)
T ss_pred CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCc------eEEEEeccCcccchhccCCCC---cceEE
Confidence 358889998875222222222323333332 3677777777553 377788776433333222222 22334
Q ss_pred EECCEEEE-EecCcceEEEEECCCCCeeec--cCCCC-CCceEE-EcCeEEEEeC--cEEEEecCCc---eEEeccchhh
Q 019186 206 VIGGKVHV-LHKGLSTVQVLDHMGLGWTVE--DYGWL-QGPMAI-VHDSVYLMSH--GLIIKQHRDV---RKVVASASEF 275 (345)
Q Consensus 206 ~~~~~iyv-~gG~~~~i~~yd~~~~~W~~~--~~~~~-~~~~~~-~~~~l~~~~~--~~i~~~d~~~---W~~~~~~p~~ 275 (345)
.+-++--+ .|-....|.++|+.++..... +..-. ..++++ .+|.+.+... +..|..+.-. =+++.++.+.
T Consensus 132 lhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~ 211 (311)
T KOG0315|consen 132 LHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKF 211 (311)
T ss_pred ecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhhe
Confidence 44333222 333778899999999966432 22211 122222 2444333332 4444444332 2222222222
Q ss_pred cccceeEEE-EE--CCeEEEEcce
Q 019186 276 RRRIGFAMI-GM--GDDIYVIGGV 296 (345)
Q Consensus 276 ~~r~~~~~~-~~--~~~l~i~GG~ 296 (345)
..+.+|.+- .+ +++.++..+.
T Consensus 212 ~ah~~~il~C~lSPd~k~lat~ss 235 (311)
T KOG0315|consen 212 QAHNGHILRCLLSPDVKYLATCSS 235 (311)
T ss_pred ecccceEEEEEECCCCcEEEeecC
Confidence 345555552 22 6666665553
No 192
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=62.31 E-value=1e+02 Score=26.56 Aligned_cols=124 Identities=13% Similarity=0.095 Sum_probs=62.8
Q ss_pred EEEEecCCCCeEEEEeCCCCC--EEeCCCCCccccccceeEEEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeC
Q 019186 58 LCVCAFDPENLWQLYDPLRDL--WITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDP 135 (345)
Q Consensus 58 l~v~gg~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~ 135 (345)
-+++-|.....+..-|+.+++ |+.+ +.. |.-.++.++++. .|+|.+ ...+|..+.
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~i--lg~----RiE~sa~vvgdf-VV~GCy----------------~g~lYfl~~ 80 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAI--LGV----RIECSAIVVGDF-VVLGCY----------------SGGLYFLCV 80 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehh--hCc----eeeeeeEEECCE-EEEEEc----------------cCcEEEEEe
Confidence 334434455677888999986 6654 333 332233335554 777765 345788888
Q ss_pred CCCC--cccCCCCCCCceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCc--eEeCCCCCccCCCceeEEEECCEE
Q 019186 136 VTRQ--WSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDV--WVPIPDLHRTHNSACTGVVIGGKV 211 (345)
Q Consensus 136 ~t~~--W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~i 211 (345)
+|+. |.-..- ..-... +.+..++.+..+|..+. .++..|+.+.. |+ ...+.......+....++.|
T Consensus 81 ~tGs~~w~f~~~-~~vk~~-a~~d~~~glIycgshd~------~~yalD~~~~~cVyk--skcgG~~f~sP~i~~g~~sl 150 (354)
T KOG4649|consen 81 KTGSQIWNFVIL-ETVKVR-AQCDFDGGLIYCGSHDG------NFYALDPKTYGCVYK--SKCGGGTFVSPVIAPGDGSL 150 (354)
T ss_pred cchhheeeeeeh-hhhccc-eEEcCCCceEEEecCCC------cEEEecccccceEEe--cccCCceeccceecCCCceE
Confidence 8873 543221 111111 22333444444454332 36777877764 54 22222212233333446677
Q ss_pred EEE
Q 019186 212 HVL 214 (345)
Q Consensus 212 yv~ 214 (345)
|+.
T Consensus 151 y~a 153 (354)
T KOG4649|consen 151 YAA 153 (354)
T ss_pred EEE
Confidence 765
No 193
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=61.36 E-value=1.3e+02 Score=29.86 Aligned_cols=125 Identities=13% Similarity=0.079 Sum_probs=65.0
Q ss_pred CCeEEEEcCcCCCCCCCceEEEEeCCCCc---eEeCCCCCccCCCceeEEEECCEEEEEecCcceEEEEECCCCCeeecc
Q 019186 159 KEKIVVAGGFTSCRKSISQAEMYDPEKDV---WVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVED 235 (345)
Q Consensus 159 ~~~iyv~gG~~~~~~~~~~v~~yd~~~~~---W~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~i~~yd~~~~~W~~~~ 235 (345)
|++-|+-|..++ ++-++++...+ |..+..+-.+ .+..-+|+..|+|-....+..|+...++.+.-.
T Consensus 421 DDryFiSGSLD~------KvRiWsI~d~~Vv~W~Dl~~lITA-----vcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~ 489 (712)
T KOG0283|consen 421 DDRYFISGSLDG------KVRLWSISDKKVVDWNDLRDLITA-----VCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDF 489 (712)
T ss_pred CCCcEeeccccc------ceEEeecCcCeeEeehhhhhhhee-----EEeccCCceEEEEEeccEEEEEEccCCeEEEee
Confidence 667777776653 36667666553 6666543222 112236777777765666777877766554321
Q ss_pred ----C-CC-----C--CCceE-EEcCeEEEEeC-cEEEEecCCc---eEEeccchhhcccceeEEEEECCeEEEEcc
Q 019186 236 ----Y-GW-----L--QGPMA-IVHDSVYLMSH-GLIIKQHRDV---RKVVASASEFRRRIGFAMIGMGDDIYVIGG 295 (345)
Q Consensus 236 ----~-~~-----~--~~~~~-~~~~~l~~~~~-~~i~~~d~~~---W~~~~~~p~~~~r~~~~~~~~~~~l~i~GG 295 (345)
. .. . +.... ...+++.+... ..|-.||... -.+.+.......+..+.+.. +|+-+|.|.
T Consensus 490 ~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~-Dgk~IVs~s 565 (712)
T KOG0283|consen 490 HIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSS-DGKHIVSAS 565 (712)
T ss_pred eEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEcc-CCCEEEEee
Confidence 0 00 0 11111 11224555555 7899999844 33333322222334344444 777777766
No 194
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=61.08 E-value=1.3e+02 Score=28.08 Aligned_cols=109 Identities=11% Similarity=-0.075 Sum_probs=61.7
Q ss_pred CCCCeEEEEeCCCCCEEeCCCCCccccccceeEEEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccC
Q 019186 64 DPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPR 143 (345)
Q Consensus 64 ~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~ 143 (345)
+...+++++|..+++-.++...... ..+.+ -+-+|+-++|..... ....++++|+...+=+++
T Consensus 259 dg~~~iy~~dl~~~~~~~Lt~~~gi---~~~Ps-~spdG~~ivf~Sdr~-------------G~p~I~~~~~~g~~~~ri 321 (425)
T COG0823 259 DGSPDIYLMDLDGKNLPRLTNGFGI---NTSPS-WSPDGSKIVFTSDRG-------------GRPQIYLYDLEGSQVTRL 321 (425)
T ss_pred CCCccEEEEcCCCCcceecccCCcc---ccCcc-CCCCCCEEEEEeCCC-------------CCcceEEECCCCCceeEe
Confidence 4467899999998874444433332 22222 233455444432211 245899999998876555
Q ss_pred CCCCCCceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCc-eEeCCC
Q 019186 144 ASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDV-WVPIPD 193 (345)
Q Consensus 144 ~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~-W~~~~~ 193 (345)
..-..... +....-+++.+++-+.... . ..+..+|+.++. |+.+..
T Consensus 322 T~~~~~~~-~p~~SpdG~~i~~~~~~~g-~--~~i~~~~~~~~~~~~~lt~ 368 (425)
T COG0823 322 TFSGGGNS-NPVWSPDGDKIVFESSSGG-Q--WDIDKNDLASGGKIRILTS 368 (425)
T ss_pred eccCCCCc-CccCCCCCCEEEEEeccCC-c--eeeEEeccCCCCcEEEccc
Confidence 43222222 3333446666666553321 1 678999998887 887654
No 195
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=60.70 E-value=1.1e+02 Score=26.15 Aligned_cols=185 Identities=17% Similarity=0.141 Sum_probs=98.3
Q ss_pred CcEEEEEecCCCCeEEEEeC----CCCCEEeCCCCCccccccceeEEEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCce
Q 019186 55 ENLLCVCAFDPENLWQLYDP----LRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEV 130 (345)
Q Consensus 55 ~~~l~v~gg~~~~~~~~yd~----~~~~W~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~ 130 (345)
++.+++........+..|.. ..+.+...-.+|.+ -.+.+-++.+|.+|.-... +..+
T Consensus 30 ~~r~~~~~~~~~~~l~E~~~~~~~~~~~~~~~~~lp~~---~~gTg~VVynGs~yynk~~----------------t~~i 90 (249)
T KOG3545|consen 30 DDRIYVMNYFDGLMLTEYTNLEDFKRGRKAEKYRLPYS---WDGTGHVVYNGSLYYNKAG----------------TRNI 90 (249)
T ss_pred cCceEEeccccCceEEEeccHHHhhccCcceEEeCCCC---ccccceEEEcceEEeeccC----------------Ccce
Confidence 55677665555556666655 33345555555654 4555667788888876542 5678
Q ss_pred EEEeCCCCC---cccCCCCCC---------CceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCC----CceEeCCCC
Q 019186 131 WSYDPVTRQ---WSPRASMLV---------PRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEK----DVWVPIPDL 194 (345)
Q Consensus 131 ~~yd~~t~~---W~~~~~~~~---------~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~----~~W~~~~~~ 194 (345)
.+|+..++. +..++.+.. +..+.-.++-..-++++=-..+. ...-.+...|+.+ .+|..- .
T Consensus 91 vky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~-~g~iv~skLdp~tl~~e~tW~T~--~ 167 (249)
T KOG3545|consen 91 IKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPEN-AGTIVLSKLDPETLEVERTWNTT--L 167 (249)
T ss_pred EEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEeccccc-CCcEEeeccCHHHhheeeeeccc--c
Confidence 899998854 444443211 11223334444445555322211 1122346677643 346432 2
Q ss_pred CccCCCceeEEEECCEEEEEec---CcceE-EEEECCCCCeeeccCCCC----CCceEE---EcCeEEEEeCcEEEEecC
Q 019186 195 HRTHNSACTGVVIGGKVHVLHK---GLSTV-QVLDHMGLGWTVEDYGWL----QGPMAI---VHDSVYLMSHGLIIKQHR 263 (345)
Q Consensus 195 ~~~~~~~~~~~~~~~~iyv~gG---~~~~i-~~yd~~~~~W~~~~~~~~----~~~~~~---~~~~l~~~~~~~i~~~d~ 263 (345)
+. +....++.+=|.||++-. ....| ++||..+++=..+.-.+. ..++.- .+.+||+.+.+.+..|+.
T Consensus 168 ~k--~~~~~aF~iCGvLY~v~S~~~~~~~i~yaydt~~~~~~~~~ipf~N~y~~~~~idYNP~D~~LY~wdng~~l~y~l 245 (249)
T KOG3545|consen 168 PK--RSAGNAFMICGVLYVVHSYNCTHTQISYAYDTTTGTQERIDLPFPNPYSYATMIDYNPRDRRLYAWDNGHQLTYNL 245 (249)
T ss_pred CC--CCcCceEEEeeeeEEEeccccCCceEEEEEEcCCCceecccccccchhhhhhccCCCcccceeeEecCCcEEEEEe
Confidence 22 223344555567888755 22223 689998887654432222 122221 256788887776666664
No 196
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=59.85 E-value=1.1e+02 Score=26.08 Aligned_cols=164 Identities=9% Similarity=0.032 Sum_probs=77.8
Q ss_pred CCCEEeCCCCCcccc--ccce-eEEEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccCCCCCCCcee
Q 019186 76 RDLWITLPVLPSKIR--HLAH-FGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPRASMLVPRAM 152 (345)
Q Consensus 76 ~~~W~~~~~~~~~~~--~~~~-~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~ 152 (345)
...|+...|+..... +.-+ ..+.-..|.|+..||. ..++..|..+++.+..-. ...-+-
T Consensus 98 K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD-----------------~~~y~~dlE~G~i~r~~r-GHtDYv 159 (325)
T KOG0649|consen 98 KRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD-----------------GVIYQVDLEDGRIQREYR-GHTDYV 159 (325)
T ss_pred hhhhhhcCccccCcccCCccceeEeccCCCcEEEecCC-----------------eEEEEEEecCCEEEEEEc-CCccee
Confidence 345777666654211 1111 1222236789999874 468889999987654321 111223
Q ss_pred eeeeEeC-CeEEEEcCcCCCCCCCceEEEEeCCCCceEe-CCCC-----CccCCCce--eEEEECCEEEEEecCcceEEE
Q 019186 153 FACCALK-EKIVVAGGFTSCRKSISQAEMYDPEKDVWVP-IPDL-----HRTHNSAC--TGVVIGGKVHVLHKGLSTVQV 223 (345)
Q Consensus 153 ~~~~~~~-~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~-~~~~-----~~~~~~~~--~~~~~~~~iyv~gG~~~~i~~ 223 (345)
|+++.-+ +.-++.|+.++ .+-++|.++.+=.. +++. ..+ ..+. .+...+..-.|+|| ...+-.
T Consensus 160 H~vv~R~~~~qilsG~EDG------tvRvWd~kt~k~v~~ie~yk~~~~lRp-~~g~wigala~~edWlvCGg-Gp~lsl 231 (325)
T KOG0649|consen 160 HSVVGRNANGQILSGAEDG------TVRVWDTKTQKHVSMIEPYKNPNLLRP-DWGKWIGALAVNEDWLVCGG-GPKLSL 231 (325)
T ss_pred eeeeecccCcceeecCCCc------cEEEEeccccceeEEeccccChhhcCc-ccCceeEEEeccCceEEecC-CCceeE
Confidence 4444322 22234444443 37788888876443 3332 222 1222 23334555556665 333455
Q ss_pred EECCCCCeeeccCCCCCCceEE-EcCeEEEEe-CcEEEEecCCc
Q 019186 224 LDHMGLGWTVEDYGWLQGPMAI-VHDSVYLMS-HGLIIKQHRDV 265 (345)
Q Consensus 224 yd~~~~~W~~~~~~~~~~~~~~-~~~~l~~~~-~~~i~~~d~~~ 265 (345)
+++.+-.-+.+-+.+.+...+. +++.+...| ++.+..|....
T Consensus 232 whLrsse~t~vfpipa~v~~v~F~~d~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 232 WHLRSSESTCVFPIPARVHLVDFVDDCVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred EeccCCCceEEEecccceeEeeeecceEEEeccccceeeeeecc
Confidence 6665554444333323223333 344444444 24555554433
No 197
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=56.52 E-value=1.7e+02 Score=27.21 Aligned_cols=174 Identities=13% Similarity=0.125 Sum_probs=84.8
Q ss_pred CcCceEEEeCCCCCcccCCCCCCCceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCce-EeCCCCCccCCCceeE
Q 019186 126 ATNEVWSYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVW-VPIPDLHRTHNSACTG 204 (345)
Q Consensus 126 ~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~~~~~~~~ 204 (345)
..+.++++|...+.--++.-+...-.-+++-.+++.+|++-=. ..+.+.+.|...-.= +.++.+..+ ....-.
T Consensus 404 ~~N~vYilDe~lnvvGkltGl~~gERIYAvRf~gdv~yiVTfr-----qtDPlfviDlsNPenPkvlGeLKIP-GfS~YL 477 (603)
T COG4880 404 PVNAVYILDENLNVVGKLTGLAPGERIYAVRFVGDVLYIVTFR-----QTDPLFVIDLSNPENPKVLGELKIP-GFSEYL 477 (603)
T ss_pred ccceeEEEcCCCcEEEEEeccCCCceEEEEEEeCceEEEEEEe-----ccCceEEEEcCCCCCCceeEEEecC-Cchhhc
Confidence 4688999999887655554443333344555667888777432 244566666554321 122222222 111111
Q ss_pred EEE-CCEEEEEec--CcceEEEEECCC-------------CCeeeccCCCCCCceEEEc--CeEEEEeC---cEEEEecC
Q 019186 205 VVI-GGKVHVLHK--GLSTVQVLDHMG-------------LGWTVEDYGWLQGPMAIVH--DSVYLMSH---GLIIKQHR 263 (345)
Q Consensus 205 ~~~-~~~iyv~gG--~~~~i~~yd~~~-------------~~W~~~~~~~~~~~~~~~~--~~l~~~~~---~~i~~~d~ 263 (345)
-.+ ++.+.-+|- ..-.+..||... +-|+.+-. .+.+...| -.|+.+.. +.|+.+..
T Consensus 478 Hpigen~~lGvG~~~g~vKiSLFdiSdl~~PkEv~~y~l~~~wspvf~---dhHAFl~d~~~~ifFlPay~~gyif~ied 554 (603)
T COG4880 478 HPIGENRLLGVGAYQGGVKISLFDISDLAAPKEVSNYTLSNAWSPVFY---DHHAFLYDPEAEIFFLPAYLGGYIFFIED 554 (603)
T ss_pred cccCCCcEEEeecccCCceEEEEeccCCCCchhhhheehhhhcchhhh---ccceeecCCcccEEEecccCccEEEEEec
Confidence 112 233333433 223455566432 34554421 12222222 24555543 45555554
Q ss_pred Cc-eEEeccchhhcccceeEEEEECCeEEEEcceecCCCCcccccccCceeeeccCCCCCceeEcCCC
Q 019186 264 DV-RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPM 330 (345)
Q Consensus 264 ~~-W~~~~~~p~~~~r~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~v~~~ 330 (345)
.. -.+-.... .-.-.+.-+++.+|++|| +++|+||-+ .|..++++
T Consensus 555 g~kl~k~~e~k----~na~RA~fi~dylY~vg~--------------~ev~~lden----swe~Vge~ 600 (603)
T COG4880 555 GSKLRKRAERK----LNADRAFFIKDYLYLVGG--------------NEVWKLDEN----SWEVVGEA 600 (603)
T ss_pred Cceeeehhhhc----ccceeeEEecceEEEecc--------------ceeEEeccc----hHhhhhhe
Confidence 43 22211111 111223447899999999 478888765 68877654
No 198
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.38 E-value=1.3e+02 Score=25.73 Aligned_cols=25 Identities=20% Similarity=0.174 Sum_probs=14.8
Q ss_pred EEEEEecCcceEEEEECCCCCeeec
Q 019186 210 KVHVLHKGLSTVQVLDHMGLGWTVE 234 (345)
Q Consensus 210 ~iyv~gG~~~~i~~yd~~~~~W~~~ 234 (345)
+=++.||.-+.+-+.+..+++|...
T Consensus 176 krlvSgGcDn~VkiW~~~~~~w~~e 200 (299)
T KOG1332|consen 176 KRLVSGGCDNLVKIWKFDSDSWKLE 200 (299)
T ss_pred ceeeccCCccceeeeecCCcchhhh
Confidence 3467788555555555556677654
No 199
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=55.37 E-value=1.9e+02 Score=27.51 Aligned_cols=103 Identities=10% Similarity=-0.010 Sum_probs=54.4
Q ss_pred EECCEEEEEecCcceEEEEECCCCCeeeccCC-CCCCc---eEE-EcCeEEEEeC--cEEEEecCCc-eEEeccchhhcc
Q 019186 206 VIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYG-WLQGP---MAI-VHDSVYLMSH--GLIIKQHRDV-RKVVASASEFRR 277 (345)
Q Consensus 206 ~~~~~iyv~gG~~~~i~~yd~~~~~W~~~~~~-~~~~~---~~~-~~~~l~~~~~--~~i~~~d~~~-W~~~~~~p~~~~ 277 (345)
..++....+||.-..++.|.+..+.-.+.... ...+. ++. .++.++..+. ..+..||.++ -.+...+.--..
T Consensus 452 ~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHta 531 (603)
T KOG0318|consen 452 SPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTA 531 (603)
T ss_pred cCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeee
Confidence 34677888899777799998877553332111 11122 222 2556666665 7888888877 222222221122
Q ss_pred cceeEEEEECCeEEEEcceecCCCCcccccccCceeeeccCCC
Q 019186 278 RIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE 320 (345)
Q Consensus 278 r~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~yd~~~~ 320 (345)
|..+-.=.-+++++..|+.+- .|.+|+.+.-
T Consensus 532 kI~~~aWsP~n~~vATGSlDt------------~Viiysv~kP 562 (603)
T KOG0318|consen 532 KINCVAWSPNNKLVATGSLDT------------NVIIYSVKKP 562 (603)
T ss_pred eEEEEEeCCCceEEEeccccc------------eEEEEEccCh
Confidence 332211122556666555332 5777777643
No 200
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=53.90 E-value=1.5e+02 Score=25.93 Aligned_cols=203 Identities=12% Similarity=0.078 Sum_probs=98.5
Q ss_pred ceeEEEEE-CCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcc---cC-CCCCCCceeeeeeEe-C-CeEEEE
Q 019186 93 AHFGVVST-AGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWS---PR-ASMLVPRAMFACCAL-K-EKIVVA 165 (345)
Q Consensus 93 ~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~---~~-~~~~~~r~~~~~~~~-~-~~iyv~ 165 (345)
.-.+++.. ++.....||.+ +.+-+|+..++.=+ ++ ..++....+.+++.+ + +.|..-
T Consensus 99 WVMtCA~sPSg~~VAcGGLd----------------N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~ 162 (343)
T KOG0286|consen 99 WVMTCAYSPSGNFVACGGLD----------------NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTG 162 (343)
T ss_pred eEEEEEECCCCCeEEecCcC----------------ceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEec
Confidence 34444443 56777788863 45778888755322 12 234445555555554 3 344333
Q ss_pred cCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCC--ceeEEEECCEEEEEecCcceEEEEECCCCCeeeccCCCC---C
Q 019186 166 GGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNS--ACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWL---Q 240 (345)
Q Consensus 166 gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~--~~~~~~~~~~iyv~gG~~~~i~~yd~~~~~W~~~~~~~~---~ 240 (345)
.|- .....+|.++.+=... +...... .......+++.|+.||.-.....+|.+...-...=.... +
T Consensus 163 SGD-------~TCalWDie~g~~~~~--f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDIN 233 (343)
T KOG0286|consen 163 SGD-------MTCALWDIETGQQTQV--FHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDIN 233 (343)
T ss_pred CCC-------ceEEEEEcccceEEEE--ecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccc
Confidence 331 2467888888764322 1111011 111112277899999866666777777664332210000 1
Q ss_pred CceEEEcCeEEEEeC--cEEEEecCCceEEeccchh--hcccceeEEEEECCeEEEEcceecCCCCcccccccCceeeec
Q 019186 241 GPMAIVHDSVYLMSH--GLIIKQHRDVRKVVASASE--FRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLT 316 (345)
Q Consensus 241 ~~~~~~~~~l~~~~~--~~i~~~d~~~W~~~~~~p~--~~~r~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~yd 316 (345)
...-..+|.-|..|. ...-.||...=+++.-... ...-.........|+++..|. +.. .+.+||
T Consensus 234 sv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy-~d~-----------~c~vWD 301 (343)
T KOG0286|consen 234 SVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGY-DDF-----------TCNVWD 301 (343)
T ss_pred eEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeee-cCC-----------ceeEee
Confidence 222223555555554 4455555544222211110 011122223344678877774 332 467788
Q ss_pred cCCCCCceeEcCCCCCccee
Q 019186 317 VGAERPTWRQVSPMTRCRGT 336 (345)
Q Consensus 317 ~~~~~~~W~~v~~~~~~r~~ 336 (345)
.-.. ..+..|..+..+
T Consensus 302 tlk~----e~vg~L~GHeNR 317 (343)
T KOG0286|consen 302 TLKG----ERVGVLAGHENR 317 (343)
T ss_pred cccc----ceEEEeeccCCe
Confidence 7543 245555555554
No 201
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=53.80 E-value=1.7e+02 Score=26.37 Aligned_cols=194 Identities=15% Similarity=0.102 Sum_probs=91.4
Q ss_pred CCCcEEEEEecCCCCeEEEEeCCCCCEEeCCCCCcc-----ccccceeEEEEECCEEEEEc-CCCCCCCCCCCCCCCCcC
Q 019186 53 SSENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSK-----IRHLAHFGVVSTAGKLFVLG-GGSDAVDPLTGDQDGSFA 126 (345)
Q Consensus 53 ~~~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~~~~-----~~~~~~~~~~~~~~~lyv~G-G~~~~~~~~~~~~~~~~~ 126 (345)
..+..+||.--.+..++.+-|...++--.--+.|.- -..+.+.++|. +|.+..+. +.. +...
T Consensus 104 ~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~-DGsl~~v~Ld~~-----------Gk~~ 171 (342)
T PF06433_consen 104 ADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCG-DGSLLTVTLDAD-----------GKEA 171 (342)
T ss_dssp TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEET-TSCEEEEEETST-----------SSEE
T ss_pred cCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEec-CCceEEEEECCC-----------CCEe
Confidence 348889999888999999999999875332222211 01122222222 33333322 211 1111
Q ss_pred cCceEEEeCCCCCcccCCCCCCCceeeeeeEeCCeEEEE--cCcCCCCCCCceEEEEeCCC-----CceEeCCCCCccCC
Q 019186 127 TNEVWSYDPVTRQWSPRASMLVPRAMFACCALKEKIVVA--GGFTSCRKSISQAEMYDPEK-----DVWVPIPDLHRTHN 199 (345)
Q Consensus 127 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~--gG~~~~~~~~~~v~~yd~~~-----~~W~~~~~~~~~~~ 199 (345)
......|++..+-.-.-+.........-...++|.+|.+ +|-. ..-...+...+ +.|+.- . .
T Consensus 172 ~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~-----~~~~~~~~~~t~~e~~~~WrPG-----G-~ 240 (342)
T PF06433_consen 172 QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS-----AKFGKPWSLLTDAEKADGWRPG-----G-W 240 (342)
T ss_dssp EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS-----EEEEEEEESS-HHHHHTTEEE------S-S
T ss_pred EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCc-----ccccCcccccCccccccCcCCc-----c-e
Confidence 223346666554211111110111122225567888875 3321 11222333222 345531 1 2
Q ss_pred CceeEEEECCEEEEEec---------CcceEEEEECCCCCeeeccCCCC-CCceEEEcC---eEEEEeC--cEEEEecCC
Q 019186 200 SACTGVVIGGKVHVLHK---------GLSTVQVLDHMGLGWTVEDYGWL-QGPMAIVHD---SVYLMSH--GLIIKQHRD 264 (345)
Q Consensus 200 ~~~~~~~~~~~iyv~gG---------~~~~i~~yd~~~~~W~~~~~~~~-~~~~~~~~~---~l~~~~~--~~i~~~d~~ 264 (345)
...+.-.-.++|||+-. ....|+.||+++++=..--+... ..++.+-.+ .||.+.. ..++.||..
T Consensus 241 Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~ 320 (342)
T PF06433_consen 241 QLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAA 320 (342)
T ss_dssp S-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETT
T ss_pred eeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCc
Confidence 22121123678999832 56789999999986432211111 123333322 5777654 689999988
Q ss_pred ceEEe
Q 019186 265 VRKVV 269 (345)
Q Consensus 265 ~W~~~ 269 (345)
+-+.+
T Consensus 321 tGk~~ 325 (342)
T PF06433_consen 321 TGKLV 325 (342)
T ss_dssp T--EE
T ss_pred CCcEE
Confidence 74433
No 202
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=53.46 E-value=69 Score=27.49 Aligned_cols=153 Identities=12% Similarity=0.069 Sum_probs=69.2
Q ss_pred CCCCcEEEEEec------CCCCeEEEEe---CCCCCEEe--CCCCCcc----ccccceeEEEEECCEEEEEcCCCCCCCC
Q 019186 52 GSSENLLCVCAF------DPENLWQLYD---PLRDLWIT--LPVLPSK----IRHLAHFGVVSTAGKLFVLGGGSDAVDP 116 (345)
Q Consensus 52 ~~~~~~l~v~gg------~~~~~~~~yd---~~~~~W~~--~~~~~~~----~~~~~~~~~~~~~~~lyv~GG~~~~~~~ 116 (345)
+..++.||++-. ......++|+ ...+.|+. ++..+.. .....-|+.+.+++.=|.+|=.+++..|
T Consensus 81 Gv~~NRLfa~iEtR~~a~~km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~sP 160 (367)
T PF12217_consen 81 GVVGNRLFAVIETRTVASNKMVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDVSP 160 (367)
T ss_dssp EEETTEEEEEEEEEETTT--EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-SSSS
T ss_pred eeecceeeEEEeehhhhhhhhhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEeccCCCCc
Confidence 345778886643 1122334444 46777865 3444431 0113456777777777777633222110
Q ss_pred CCCCCCCCcCcCceEEEeCCCCCccc--------CCC-CCCCceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCc
Q 019186 117 LTGDQDGSFATNEVWSYDPVTRQWSP--------RAS-MLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDV 187 (345)
Q Consensus 117 ~~~~~~~~~~~~~~~~yd~~t~~W~~--------~~~-~~~~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~ 187 (345)
..-.+..|. +.|.. +++ ....-+..++-.++++||+.--.....+.-..+..-+..-..
T Consensus 161 ---------Re~G~~yfs---~~~~sp~~~vrr~i~sey~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~ 228 (367)
T PF12217_consen 161 ---------RELGFLYFS---DAFASPGVFVRRIIPSEYERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQN 228 (367)
T ss_dssp ----------EEEEEEET---TTTT-TT--EEEE--GGG-TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS
T ss_pred ---------ceeeEEEec---ccccCCcceeeeechhhhccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCc
Confidence 111223232 22321 221 222334556667899999984322222334566777777778
Q ss_pred eEeCCCCCccCCCceeEEEECCEEEEEec
Q 019186 188 WVPIPDLHRTHNSACTGVVIGGKVHVLHK 216 (345)
Q Consensus 188 W~~~~~~~~~~~~~~~~~~~~~~iyv~gG 216 (345)
|..+.-....+....-.+-.++.||++|.
T Consensus 229 w~slrfp~nvHhtnlPFakvgD~l~mFgs 257 (367)
T PF12217_consen 229 WSSLRFPNNVHHTNLPFAKVGDVLYMFGS 257 (367)
T ss_dssp -EEEE-TT---SS---EEEETTEEEEEEE
T ss_pred hhhccccccccccCCCceeeCCEEEEEec
Confidence 98663322222344455678999999984
No 203
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=52.10 E-value=2.1e+02 Score=27.07 Aligned_cols=90 Identities=16% Similarity=0.123 Sum_probs=49.5
Q ss_pred ceEEEeCCCCC----cccCCCCCCCceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeE
Q 019186 129 EVWSYDPVTRQ----WSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTG 204 (345)
Q Consensus 129 ~~~~yd~~t~~----W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~ 204 (345)
.+..||..... |...-+ .+-.+-+.+-.+..|++--|++. ++..||..+..-... +... ....++
T Consensus 188 ~VtlwDv~g~sp~~~~~~~Hs--AP~~gicfspsne~l~vsVG~Dk------ki~~yD~~s~~s~~~--l~y~-~Plstv 256 (673)
T KOG4378|consen 188 AVTLWDVQGMSPIFHASEAHS--APCRGICFSPSNEALLVSVGYDK------KINIYDIRSQASTDR--LTYS-HPLSTV 256 (673)
T ss_pred eEEEEeccCCCcccchhhhcc--CCcCcceecCCccceEEEecccc------eEEEeecccccccce--eeec-CCccee
Confidence 46677775543 222211 12233444556889999888763 489999886543322 1111 112334
Q ss_pred EEEC-CEEEEEecCcceEEEEECCCC
Q 019186 205 VVIG-GKVHVLHKGLSTVQVLDHMGL 229 (345)
Q Consensus 205 ~~~~-~~iyv~gG~~~~i~~yd~~~~ 229 (345)
+..+ |.+.+.|-....++.||++..
T Consensus 257 af~~~G~~L~aG~s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 257 AFSECGTYLCAGNSKGELIAYDMRST 282 (673)
T ss_pred eecCCceEEEeecCCceEEEEecccC
Confidence 4444 444444546778899998654
No 204
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=51.67 E-value=1.9e+02 Score=26.21 Aligned_cols=144 Identities=13% Similarity=0.123 Sum_probs=76.7
Q ss_pred eeEEEEE-CCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccCCCCCCCceeeee--eEeCCeEEEEcCcCC
Q 019186 94 HFGVVST-AGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPRASMLVPRAMFAC--CALKEKIVVAGGFTS 170 (345)
Q Consensus 94 ~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~--~~~~~~iyv~gG~~~ 170 (345)
-++++.. ++.+.+-||.+ +..++++..++.|- ..+......-+. ...++.+.+-|+.++
T Consensus 67 vFavsl~P~~~l~aTGGgD----------------D~AflW~~~~ge~~--~eltgHKDSVt~~~FshdgtlLATGdmsG 128 (399)
T KOG0296|consen 67 VFAVSLHPNNNLVATGGGD----------------DLAFLWDISTGEFA--GELTGHKDSVTCCSFSHDGTLLATGDMSG 128 (399)
T ss_pred eEEEEeCCCCceEEecCCC----------------ceEEEEEccCCcce--eEecCCCCceEEEEEccCceEEEecCCCc
Confidence 3445444 56688888753 45788999888742 233333322222 344788888888875
Q ss_pred CCCCCceEEEEeCCCC--ceEeCCCCCccCCCceeEEEE-CCEEEEEecCcceEEEEECCCCCe-eeccCCCCC--CceE
Q 019186 171 CRKSISQAEMYDPEKD--VWVPIPDLHRTHNSACTGVVI-GGKVHVLHKGLSTVQVLDHMGLGW-TVEDYGWLQ--GPMA 244 (345)
Q Consensus 171 ~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~-~~~iyv~gG~~~~i~~yd~~~~~W-~~~~~~~~~--~~~~ 244 (345)
. +.+++..+. +|......-.. . -..-+ .+.|++.|-...+++.|...++.- +.+.....+ ..-.
T Consensus 129 ~------v~v~~~stg~~~~~~~~e~~di-e---Wl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f 198 (399)
T KOG0296|consen 129 K------VLVFKVSTGGEQWKLDQEVEDI-E---WLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEF 198 (399)
T ss_pred c------EEEEEcccCceEEEeecccCce-E---EEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccc
Confidence 3 666665554 57654232211 0 00011 235666665666778887766432 222221111 1222
Q ss_pred EEcCeEEEEeC--cEEEEecCCc
Q 019186 245 IVHDSVYLMSH--GLIIKQHRDV 265 (345)
Q Consensus 245 ~~~~~l~~~~~--~~i~~~d~~~ 265 (345)
..+|+..+.+. +.+..+++++
T Consensus 199 ~pdGKr~~tgy~dgti~~Wn~kt 221 (399)
T KOG0296|consen 199 IPDGKRILTGYDDGTIIVWNPKT 221 (399)
T ss_pred cCCCceEEEEecCceEEEEecCC
Confidence 23455555444 6777777776
No 205
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=51.53 E-value=1.2e+02 Score=23.86 Aligned_cols=59 Identities=10% Similarity=0.044 Sum_probs=34.7
Q ss_pred eEeCCeEEEEcCcCCCCCCCceEEEEeCCCCce-EeCCCCCccC--CCceeEEEE-CCEEEEEe
Q 019186 156 CALKEKIVVAGGFTSCRKSISQAEMYDPEKDVW-VPIPDLHRTH--NSACTGVVI-GGKVHVLH 215 (345)
Q Consensus 156 ~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~~--~~~~~~~~~-~~~iyv~g 215 (345)
+.++|.+|.+....... ....+..||..+++. +.++.++... .......++ ++.|-++.
T Consensus 2 V~vnG~~hW~~~~~~~~-~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~ 64 (164)
T PF07734_consen 2 VFVNGALHWLAYDENND-EKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLY 64 (164)
T ss_pred EEECCEEEeeEEecCCC-CceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEE
Confidence 46789999887655321 122699999999999 5554433331 112222222 66776663
No 206
>PTZ00420 coronin; Provisional
Probab=51.47 E-value=2.4e+02 Score=27.52 Aligned_cols=102 Identities=8% Similarity=-0.054 Sum_probs=52.1
Q ss_pred EEEEEecCcceEEEEECCCCCee-eccCCCCCCceE-EEcCeEEEEeC--cEEEEecCCceEEeccchhhcccceeEEEE
Q 019186 210 KVHVLHKGLSTVQVLDHMGLGWT-VEDYGWLQGPMA-IVHDSVYLMSH--GLIIKQHRDVRKVVASASEFRRRIGFAMIG 285 (345)
Q Consensus 210 ~iyv~gG~~~~i~~yd~~~~~W~-~~~~~~~~~~~~-~~~~~l~~~~~--~~i~~~d~~~W~~~~~~p~~~~r~~~~~~~ 285 (345)
.+++.+|.-..+..+|+.+++=. .+........+. ..+|.+++.++ ..+..+|+.+.+.+..+...........+.
T Consensus 139 ~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~ 218 (568)
T PTZ00420 139 YIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIW 218 (568)
T ss_pred eEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEE
Confidence 45556666678889999876421 111110111111 13677777664 688999988755544333111110111111
Q ss_pred -----ECCeEEEEcceecCCCCcccccccCceeeeccCC
Q 019186 286 -----MGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGA 319 (345)
Q Consensus 286 -----~~~~l~i~GG~~~~~~~~~~~~~~~~v~~yd~~~ 319 (345)
.++..++.+|.+... .+.|.+||+..
T Consensus 219 ~~~fs~d~~~IlTtG~d~~~--------~R~VkLWDlr~ 249 (568)
T PTZ00420 219 IDGLGGDDNYILSTGFSKNN--------MREMKLWDLKN 249 (568)
T ss_pred eeeEcCCCCEEEEEEcCCCC--------ccEEEEEECCC
Confidence 245566776765431 13577777763
No 207
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=51.41 E-value=2.1e+02 Score=26.76 Aligned_cols=146 Identities=12% Similarity=0.014 Sum_probs=73.8
Q ss_pred CeEEEEeCCCCCEEeCCCCCccccccceeEEEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccCCCC
Q 019186 67 NLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPRASM 146 (345)
Q Consensus 67 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~ 146 (345)
..++.+|..+++=..+...+.. ..+-..+-+|+-++|-...+ ...++|++|..+++-.++...
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~----~~~P~fspDG~~l~f~~~rd-------------g~~~iy~~dl~~~~~~~Lt~~ 280 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGN----NGAPAFSPDGSKLAFSSSRD-------------GSPDIYLMDLDGKNLPRLTNG 280 (425)
T ss_pred ceEEEEeccCCccceeeccCCc----cCCccCCCCCCEEEEEECCC-------------CCccEEEEcCCCCcceecccC
Confidence 4566667666655554443321 12222333455444443222 356899999999873333332
Q ss_pred CCCceeeeeeE-eCCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeEEEECCEEEEEec---CcceEE
Q 019186 147 LVPRAMFACCA-LKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHK---GLSTVQ 222 (345)
Q Consensus 147 ~~~r~~~~~~~-~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~iyv~gG---~~~~i~ 222 (345)
.. ...+..-. -+.+|+......+ ...+++||++..+=+.+..-... . ..-...-+++.+++-+ ....+.
T Consensus 281 ~g-i~~~Ps~spdG~~ivf~Sdr~G----~p~I~~~~~~g~~~~riT~~~~~-~-~~p~~SpdG~~i~~~~~~~g~~~i~ 353 (425)
T COG0823 281 FG-INTSPSWSPDGSKIVFTSDRGG----RPQIYLYDLEGSQVTRLTFSGGG-N-SNPVWSPDGDKIVFESSSGGQWDID 353 (425)
T ss_pred Cc-cccCccCCCCCCEEEEEeCCCC----CcceEEECCCCCceeEeeccCCC-C-cCccCCCCCCEEEEEeccCCceeeE
Confidence 22 22222223 3444544432222 34799999988765544322111 1 1223344444444432 125578
Q ss_pred EEECCCCC-eeeccC
Q 019186 223 VLDHMGLG-WTVEDY 236 (345)
Q Consensus 223 ~yd~~~~~-W~~~~~ 236 (345)
.+|+.++. |+.+..
T Consensus 354 ~~~~~~~~~~~~lt~ 368 (425)
T COG0823 354 KNDLASGGKIRILTS 368 (425)
T ss_pred EeccCCCCcEEEccc
Confidence 88887776 887754
No 208
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=51.04 E-value=1.2e+02 Score=26.59 Aligned_cols=59 Identities=12% Similarity=0.145 Sum_probs=30.3
Q ss_pred CCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeEEEECCEEEEEecCcceEEEEECCCCCeeecc
Q 019186 159 KEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLGWTVED 235 (345)
Q Consensus 159 ~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~i~~yd~~~~~W~~~~ 235 (345)
.++..+.||.++ .+.+||.+.-.=.+-+.+-.. ...+++-...+.+.|...+-.|..+.
T Consensus 55 egrymlSGgadg------si~v~Dl~n~t~~e~s~li~k------------~~c~v~~~h~~~Hky~iss~~WyP~D 113 (397)
T KOG4283|consen 55 EGRYMLSGGADG------SIAVFDLQNATDYEASGLIAK------------HKCIVAKQHENGHKYAISSAIWYPID 113 (397)
T ss_pred cceEEeecCCCc------cEEEEEeccccchhhccceeh------------eeeeccccCCccceeeeeeeEEeeec
Confidence 466677777664 388898775432221111111 11123333444566666666776653
No 209
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=49.81 E-value=2.1e+02 Score=26.38 Aligned_cols=182 Identities=13% Similarity=0.085 Sum_probs=93.4
Q ss_pred CceEEEeCCCCCcccCCCCCCCceeeeeeEe-CCeEEEEcCcCCCCCCCceEEEEeCCCC---ceEeCCCCCccCCCcee
Q 019186 128 NEVWSYDPVTRQWSPRASMLVPRAMFACCAL-KEKIVVAGGFTSCRKSISQAEMYDPEKD---VWVPIPDLHRTHNSACT 203 (345)
Q Consensus 128 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~~~~~v~~yd~~~~---~W~~~~~~~~~~~~~~~ 203 (345)
..+..+|..|+.-...-+.....+..+++-+ ++.=++.|+.+ ..+..+|...+ .|+-+.. + +..--
T Consensus 291 e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~d------r~i~~wdlDgn~~~~W~gvr~---~-~v~dl 360 (519)
T KOG0293|consen 291 EVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPD------RTIIMWDLDGNILGNWEGVRD---P-KVHDL 360 (519)
T ss_pred HheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCC------CcEEEecCCcchhhccccccc---c-eeEEE
Confidence 3477888888764433221222222333333 77778888765 33677776654 6887654 2 21222
Q ss_pred EEEECC-EEEEEecCcceEEEEECCCCCee-eccCCCCCCceEEE-cCeEEEEeC--cEEEEecCCceEEeccchhhccc
Q 019186 204 GVVIGG-KVHVLHKGLSTVQVLDHMGLGWT-VEDYGWLQGPMAIV-HDSVYLMSH--GLIIKQHRDVRKVVASASEFRRR 278 (345)
Q Consensus 204 ~~~~~~-~iyv~gG~~~~i~~yd~~~~~W~-~~~~~~~~~~~~~~-~~~l~~~~~--~~i~~~d~~~W~~~~~~p~~~~r 278 (345)
+++.|| .+++++ .-..+..|+..+..=. .+.......+.+.. ++++.+++- ..+...|.++|+.+.... ...+
T Consensus 361 ait~Dgk~vl~v~-~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~-Ghkq 438 (519)
T KOG0293|consen 361 AITYDGKYVLLVT-VDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYF-GHKQ 438 (519)
T ss_pred EEcCCCcEEEEEe-cccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhh-cccc
Confidence 334455 466665 4566677776554333 22222222333333 556666654 677777777766654332 1122
Q ss_pred cee---EEEEECCeEEEEcceecCCCCcccccccCceeeeccCCCCCceeEcCCCCCccee
Q 019186 279 IGF---AMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGT 336 (345)
Q Consensus 279 ~~~---~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~v~~~~~~r~~ 336 (345)
..+ ++...++.-+|..|.-. ..|++|+..++ ..++.|+..-.+
T Consensus 439 ~~fiIrSCFgg~~~~fiaSGSED-----------~kvyIWhr~sg----kll~~LsGHs~~ 484 (519)
T KOG0293|consen 439 GHFIIRSCFGGGNDKFIASGSED-----------SKVYIWHRISG----KLLAVLSGHSKT 484 (519)
T ss_pred cceEEEeccCCCCcceEEecCCC-----------ceEEEEEccCC----ceeEeecCCcce
Confidence 222 12222333555555322 26888888776 245666654443
No 210
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=49.80 E-value=1.7e+02 Score=25.14 Aligned_cols=83 Identities=13% Similarity=0.040 Sum_probs=42.5
Q ss_pred ceEEEeCCCCCcccCCCCCCCceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCce--e-EE
Q 019186 129 EVWSYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSAC--T-GV 205 (345)
Q Consensus 129 ~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~--~-~~ 205 (345)
.+..+|+.+-.--+--.||......++.- +-.+||.||.+. .++.||..|+.=. ...... ..+. + -.
T Consensus 206 sV~Fwdaksf~~lKs~k~P~nV~SASL~P-~k~~fVaGged~------~~~kfDy~TgeEi--~~~nkg-h~gpVhcVrF 275 (334)
T KOG0278|consen 206 SVKFWDAKSFGLLKSYKMPCNVESASLHP-KKEFFVAGGEDF------KVYKFDYNTGEEI--GSYNKG-HFGPVHCVRF 275 (334)
T ss_pred eeEEeccccccceeeccCccccccccccC-CCceEEecCcce------EEEEEeccCCcee--eecccC-CCCceEEEEE
Confidence 45556665433222223444333333333 337899999653 3788888776522 222111 1111 1 12
Q ss_pred EECCEEEEEecCcceE
Q 019186 206 VIGGKVHVLHKGLSTV 221 (345)
Q Consensus 206 ~~~~~iyv~gG~~~~i 221 (345)
.-+|.+|..|..-.++
T Consensus 276 SPdGE~yAsGSEDGTi 291 (334)
T KOG0278|consen 276 SPDGELYASGSEDGTI 291 (334)
T ss_pred CCCCceeeccCCCceE
Confidence 3489999998633333
No 211
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.66 E-value=2.1e+02 Score=26.16 Aligned_cols=140 Identities=15% Similarity=0.170 Sum_probs=71.0
Q ss_pred eEEEEcCcCCCCCCCceEEEEeCCCC--ceEeC--CC----CCccCCCceeEEEECC---EEEEEecCcceEEEEECCCC
Q 019186 161 KIVVAGGFTSCRKSISQAEMYDPEKD--VWVPI--PD----LHRTHNSACTGVVIGG---KVHVLHKGLSTVQVLDHMGL 229 (345)
Q Consensus 161 ~iyv~gG~~~~~~~~~~v~~yd~~~~--~W~~~--~~----~~~~~~~~~~~~~~~~---~iyv~gG~~~~i~~yd~~~~ 229 (345)
.|+..||..+ .+.+.+||.+.. .|+.- ++ +-.+ .+...+..+.+ .-++.+-....+-.||++.+
T Consensus 162 ~Iva~GGke~----~n~lkiwdle~~~qiw~aKNvpnD~L~LrVP-vW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~q 236 (412)
T KOG3881|consen 162 YIVATGGKEN----INELKIWDLEQSKQIWSAKNVPNDRLGLRVP-VWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQ 236 (412)
T ss_pred ceEecCchhc----ccceeeeecccceeeeeccCCCCccccceee-eeeccceecCCCCCceEEEEecceeEEEecCccc
Confidence 5777788653 466888887765 47632 11 1222 33444444444 33333325667888999855
Q ss_pred CeeeccCCCC----CCceEEEcCeEEEEeC--cEEEEecCCceEEe----ccchhhcccceeEEEEECCeEEEEcceecC
Q 019186 230 GWTVEDYGWL----QGPMAIVHDSVYLMSH--GLIIKQHRDVRKVV----ASASEFRRRIGFAMIGMGDDIYVIGGVIGP 299 (345)
Q Consensus 230 ~W~~~~~~~~----~~~~~~~~~~l~~~~~--~~i~~~d~~~W~~~----~~~p~~~~r~~~~~~~~~~~l~i~GG~~~~ 299 (345)
+=-...-... .+.....++.+..++. +++..||...-..+ .... ...|. -.+.-.+.++..+|.+.
T Consensus 237 RRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~t-Gsirs--ih~hp~~~~las~GLDR- 312 (412)
T KOG3881|consen 237 RRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGIT-GSIRS--IHCHPTHPVLASCGLDR- 312 (412)
T ss_pred CcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCcc-CCcce--EEEcCCCceEEeeccce-
Confidence 4222111111 2222233444444444 89999998772222 1111 01121 11223446888777553
Q ss_pred CCCcccccccCceeeeccCCC
Q 019186 300 DRWNWDIKPMSDVDVLTVGAE 320 (345)
Q Consensus 300 ~~~~~~~~~~~~v~~yd~~~~ 320 (345)
-|-+||.+++
T Consensus 313 -----------yvRIhD~ktr 322 (412)
T KOG3881|consen 313 -----------YVRIHDIKTR 322 (412)
T ss_pred -----------eEEEeecccc
Confidence 3557777764
No 212
>PRK10115 protease 2; Provisional
Probab=48.88 E-value=2.9e+02 Score=27.71 Aligned_cols=183 Identities=7% Similarity=-0.082 Sum_probs=90.3
Q ss_pred cCceEEEeCCCCCccc--CCCCCCCceeeeeeEe-CCeEEEEcCcCCCCCCCceEEEEeC--CCCceEeCCCCCccCCCc
Q 019186 127 TNEVWSYDPVTRQWSP--RASMLVPRAMFACCAL-KEKIVVAGGFTSCRKSISQAEMYDP--EKDVWVPIPDLHRTHNSA 201 (345)
Q Consensus 127 ~~~~~~yd~~t~~W~~--~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~~~~~v~~yd~--~~~~W~~~~~~~~~~~~~ 201 (345)
..+++++++.|+.-.. +-.-............ +++..++...+. ..+.++.|+. .+..|..+-+.+.. . .
T Consensus 198 ~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~-~-~ 272 (686)
T PRK10115 198 PYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASA---TTSEVLLLDAELADAEPFVFLPRRKD-H-E 272 (686)
T ss_pred CCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECC---ccccEEEEECcCCCCCceEEEECCCC-C-E
Confidence 3689999999884322 1111111222222333 444334444332 2456888883 23444333222222 1 1
Q ss_pred eeEEEECCEEEEEec---CcceEEEEECC-CCCeeeccCCCC---CCceEEEcCeEEEEeC----cEEEEecCCc--eEE
Q 019186 202 CTGVVIGGKVHVLHK---GLSTVQVLDHM-GLGWTVEDYGWL---QGPMAIVHDSVYLMSH----GLIIKQHRDV--RKV 268 (345)
Q Consensus 202 ~~~~~~~~~iyv~gG---~~~~i~~yd~~-~~~W~~~~~~~~---~~~~~~~~~~l~~~~~----~~i~~~d~~~--W~~ 268 (345)
......++.+|+..- ....+...++. .++|+.+-+... ...+...++.|++... ..++.++... ...
T Consensus 273 ~~~~~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g~~~l~~~~~~~~~~~~ 352 (686)
T PRK10115 273 YSLDHYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRGLTSLRQINRKTREVIG 352 (686)
T ss_pred EEEEeCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEEEEeCCEEEEEEEcCCCCceEE
Confidence 223344678888742 44557777776 578988754422 2233444666666543 6777777643 333
Q ss_pred eccchhhcccceeEEE-E--EC-CeEEE-EcceecCCCCcccccccCceeeeccCCCCCceeEcCC
Q 019186 269 VASASEFRRRIGFAMI-G--MG-DDIYV-IGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSP 329 (345)
Q Consensus 269 ~~~~p~~~~r~~~~~~-~--~~-~~l~i-~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~v~~ 329 (345)
+.. + .+.....+. . .+ +.+++ +.+.. .-.+++.||+.++ +|+.+..
T Consensus 353 l~~-~--~~~~~~~~~~~~~~~~~~~~~~~ss~~----------~P~~~y~~d~~~~--~~~~l~~ 403 (686)
T PRK10115 353 IAF-D--DPAYVTWIAYNPEPETSRLRYGYSSMT----------TPDTLFELDMDTG--ERRVLKQ 403 (686)
T ss_pred ecC-C--CCceEeeecccCCCCCceEEEEEecCC----------CCCEEEEEECCCC--cEEEEEe
Confidence 320 1 111111111 1 12 23332 22322 2258899999887 8877653
No 213
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=48.67 E-value=1.2e+02 Score=23.18 Aligned_cols=58 Identities=14% Similarity=0.244 Sum_probs=31.9
Q ss_pred cCceEEEeCCCCC---cccCCCCCCCceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCc--eEeC
Q 019186 127 TNEVWSYDPVTRQ---WSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDV--WVPI 191 (345)
Q Consensus 127 ~~~~~~yd~~t~~---W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~--W~~~ 191 (345)
.+.+..||...|. ++.+++--..-..-...-....+.++||.. ++.-||-+-++ |+..
T Consensus 72 ~t~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGnc-------si~Gfd~~G~e~fWtVt 134 (136)
T PF14781_consen 72 QTSLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNC-------SIQGFDYEGNEIFWTVT 134 (136)
T ss_pred cceEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECceE-------EEEEeCCCCcEEEEEec
Confidence 5689999998886 444443111111111111246788888854 36667665443 6644
No 214
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=48.05 E-value=2.1e+02 Score=25.87 Aligned_cols=226 Identities=14% Similarity=0.089 Sum_probs=112.1
Q ss_pred CcEEEEEecCCCCeEEEEeCCCCCEEeCCCCCccccccceeEEEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEe
Q 019186 55 ENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYD 134 (345)
Q Consensus 55 ~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd 134 (345)
++..|+-| .....+-+.|..+++... .++... -..-.+++....=|+|.... -..+-+||
T Consensus 162 ~n~wf~tg-s~DrtikIwDlatg~Lkl--tltGhi--~~vr~vavS~rHpYlFs~ge---------------dk~VKCwD 221 (460)
T KOG0285|consen 162 GNEWFATG-SADRTIKIWDLATGQLKL--TLTGHI--ETVRGVAVSKRHPYLFSAGE---------------DKQVKCWD 221 (460)
T ss_pred CceeEEec-CCCceeEEEEcccCeEEE--eecchh--heeeeeeecccCceEEEecC---------------CCeeEEEe
Confidence 44444444 334567788998886543 344321 12234566666677776542 34688999
Q ss_pred CCCCCcccC--CCCCCCceeeeeeEe-CCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeEE---EEC
Q 019186 135 PVTRQWSPR--ASMLVPRAMFACCAL-KEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGV---VIG 208 (345)
Q Consensus 135 ~~t~~W~~~--~~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~---~~~ 208 (345)
+..|+..+- +.|. .-.++... --.+.+-||.+. .+-++|..+..=. .-|... ....+.+ ..|
T Consensus 222 Le~nkvIR~YhGHlS---~V~~L~lhPTldvl~t~grDs------t~RvWDiRtr~~V--~~l~GH-~~~V~~V~~~~~d 289 (460)
T KOG0285|consen 222 LEYNKVIRHYHGHLS---GVYCLDLHPTLDVLVTGGRDS------TIRVWDIRTRASV--HVLSGH-TNPVASVMCQPTD 289 (460)
T ss_pred chhhhhHHHhccccc---eeEEEeccccceeEEecCCcc------eEEEeeecccceE--EEecCC-CCcceeEEeecCC
Confidence 988863221 1110 01122222 134556666553 3677887765421 112222 2112222 236
Q ss_pred CEEEEEecCcceEEEEECCCCCee-eccCCCCCCceEEEcCeEEEEeC---cEEEEecCCceEEeccchhhcccceeEEE
Q 019186 209 GKVHVLHKGLSTVQVLDHMGLGWT-VEDYGWLQGPMAIVHDSVYLMSH---GLIIKQHRDVRKVVASASEFRRRIGFAMI 284 (345)
Q Consensus 209 ~~iyv~gG~~~~i~~yd~~~~~W~-~~~~~~~~~~~~~~~~~l~~~~~---~~i~~~d~~~W~~~~~~p~~~~r~~~~~~ 284 (345)
.++|- |..-.++-.+|+..++=- .+........+..++-+.++|-. +.+..++...-..+..+. .......++.
T Consensus 290 pqvit-~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nls-gh~~iintl~ 367 (460)
T KOG0285|consen 290 PQVIT-GSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLS-GHNAIINTLS 367 (460)
T ss_pred CceEE-ecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccc-cccceeeeee
Confidence 67654 335667777887766432 22211112223333434444432 444444433311121111 1223445666
Q ss_pred EECCeEEEEcceecCCCCcccccccCceeeeccCCCCCceeEc
Q 019186 285 GMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQV 327 (345)
Q Consensus 285 ~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~v 327 (345)
...+.+++.||.++ .++.||-+++ +..+.+
T Consensus 368 ~nsD~v~~~G~dng------------~~~fwdwksg-~nyQ~~ 397 (460)
T KOG0285|consen 368 VNSDGVLVSGGDNG------------SIMFWDWKSG-HNYQRG 397 (460)
T ss_pred eccCceEEEcCCce------------EEEEEecCcC-cccccc
Confidence 77788999998554 4677888763 566655
No 215
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=47.61 E-value=2.1e+02 Score=25.69 Aligned_cols=239 Identities=13% Similarity=-0.004 Sum_probs=109.8
Q ss_pred CcEEEEEecCC-CC--eEEEEeCCCCCEEeCCCCCccccccceeEEEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCceE
Q 019186 55 ENLLCVCAFDP-EN--LWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVW 131 (345)
Q Consensus 55 ~~~l~v~gg~~-~~--~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~ 131 (345)
+..||++.... .. ..+..|+..++.+.+...+.+-. -..+..+..++++.+...+ ....+-
T Consensus 51 ~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~-~p~yvsvd~~g~~vf~AnY---------------~~g~v~ 114 (346)
T COG2706 51 QRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGS-PPCYVSVDEDGRFVFVANY---------------HSGSVS 114 (346)
T ss_pred CCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCC-CCeEEEECCCCCEEEEEEc---------------cCceEE
Confidence 55788886532 33 34556777678777654443311 1122223334443333333 234566
Q ss_pred EEeCCCCC--ccc------CCCCCCCcee--eeeeEe---CC-eEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCC-c
Q 019186 132 SYDPVTRQ--WSP------RASMLVPRAM--FACCAL---KE-KIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLH-R 196 (345)
Q Consensus 132 ~yd~~t~~--W~~------~~~~~~~r~~--~~~~~~---~~-~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~ 196 (345)
+|-.+++- |.. .+.-|.+|.. |+..+. ++ .+++. -. ..+++..|+.+.+.-+...... .
T Consensus 115 v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~-DL-----G~Dri~~y~~~dg~L~~~~~~~v~ 188 (346)
T COG2706 115 VYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVP-DL-----GTDRIFLYDLDDGKLTPADPAEVK 188 (346)
T ss_pred EEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEe-ec-----CCceEEEEEcccCccccccccccC
Confidence 66665431 222 2222334422 222221 34 34333 11 1467899998876655443211 1
Q ss_pred cCCCceeEE-EE-C-CEEEEEecCcceEEE--EECCCCCeeeccC---CCC-----CCceEE---EcCe-EEEEeC--cE
Q 019186 197 THNSACTGV-VI-G-GKVHVLHKGLSTVQV--LDHMGLGWTVEDY---GWL-----QGPMAI---VHDS-VYLMSH--GL 257 (345)
Q Consensus 197 ~~~~~~~~~-~~-~-~~iyv~gG~~~~i~~--yd~~~~~W~~~~~---~~~-----~~~~~~---~~~~-l~~~~~--~~ 257 (345)
+ ..+.-.+ .+ + ...|++....++|.+ ||...++..++.. +|. ...+++ .+|+ ||+.+. +.
T Consensus 189 ~-G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~ds 267 (346)
T COG2706 189 P-GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDS 267 (346)
T ss_pred C-CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCe
Confidence 2 2222222 22 3 448888875555555 5555567766532 222 111221 2555 444443 55
Q ss_pred EEEe--cCCc--eEEeccchh--hcccceeEEEEECCeEEEEcceecCCCCcccccccCceeeeccCCCCCceeEcCC
Q 019186 258 IIKQ--HRDV--RKVVASASE--FRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSP 329 (345)
Q Consensus 258 i~~~--d~~~--W~~~~~~p~--~~~r~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~v~~ 329 (345)
|..| |+.. -.-+...+. ..+|.+. ..-+++.+++.+.++.. -.|+.-|++++ +=.++..
T Consensus 268 I~~f~V~~~~g~L~~~~~~~teg~~PR~F~--i~~~g~~Liaa~q~sd~---------i~vf~~d~~TG--~L~~~~~ 332 (346)
T COG2706 268 IAVFSVDPDGGKLELVGITPTEGQFPRDFN--INPSGRFLIAANQKSDN---------ITVFERDKETG--RLTLLGR 332 (346)
T ss_pred EEEEEEcCCCCEEEEEEEeccCCcCCccce--eCCCCCEEEEEccCCCc---------EEEEEEcCCCc--eEEeccc
Confidence 5555 4443 222221111 1356432 33455666666644432 13444466776 4444443
No 216
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=46.71 E-value=3.2e+02 Score=27.49 Aligned_cols=178 Identities=10% Similarity=0.052 Sum_probs=91.6
Q ss_pred cCceEEEeCCCCCcccCCCCCCCceeeeeeE-eCCeEEEEcCcCCCCCCCceEEEEeCCCCceE-eCCCCCccCCCceeE
Q 019186 127 TNEVWSYDPVTRQWSPRASMLVPRAMFACCA-LKEKIVVAGGFTSCRKSISQAEMYDPEKDVWV-PIPDLHRTHNSACTG 204 (345)
Q Consensus 127 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~~~~~~~~ 204 (345)
...+.+|+-++++..--..-...+- .+++. -+|.+.+-|+.++ +|-+||..+.--. +... + -.+.++
T Consensus 329 lgQLlVweWqsEsYVlKQQgH~~~i-~~l~YSpDgq~iaTG~eDg------KVKvWn~~SgfC~vTFte---H-ts~Vt~ 397 (893)
T KOG0291|consen 329 LGQLLVWEWQSESYVLKQQGHSDRI-TSLAYSPDGQLIATGAEDG------KVKVWNTQSGFCFVTFTE---H-TSGVTA 397 (893)
T ss_pred cceEEEEEeeccceeeeccccccce-eeEEECCCCcEEEeccCCC------cEEEEeccCceEEEEecc---C-CCceEE
Confidence 4467778776665422111111111 12222 2777878877653 4889988775432 2222 1 222333
Q ss_pred E--EECCEEEEEecCcceEEEEECCCCC-eeecc-CCCCCCceEEEc--CeEEEEeC---cEEEEecCCceEEeccchhh
Q 019186 205 V--VIGGKVHVLHKGLSTVQVLDHMGLG-WTVED-YGWLQGPMAIVH--DSVYLMSH---GLIIKQHRDVRKVVASASEF 275 (345)
Q Consensus 205 ~--~~~~~iyv~gG~~~~i~~yd~~~~~-W~~~~-~~~~~~~~~~~~--~~l~~~~~---~~i~~~d~~~W~~~~~~p~~ 275 (345)
+ ...++..+....-.++-++|++.-+ +.... +.+..++...++ |.|.+.|. -.|+..+.++-+.+.-+..-
T Consensus 398 v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGH 477 (893)
T KOG0291|consen 398 VQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGH 477 (893)
T ss_pred EEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCC
Confidence 2 3345544443345678888887543 44333 333366666677 89999998 46666666664443332210
Q ss_pred cccceeEEEEECCeEEEEcceecCCCCcccccccCceeeeccCCCCCceeEcCCC
Q 019186 276 RRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPM 330 (345)
Q Consensus 276 ~~r~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~v~~~ 330 (345)
..-...-+....+.+++.|..+.+ |-+||.-. +|.++.++
T Consensus 478 EgPVs~l~f~~~~~~LaS~SWDkT------------VRiW~if~---s~~~vEtl 517 (893)
T KOG0291|consen 478 EGPVSGLSFSPDGSLLASGSWDKT------------VRIWDIFS---SSGTVETL 517 (893)
T ss_pred CCcceeeEEccccCeEEeccccce------------EEEEEeec---cCceeeeE
Confidence 000111123345667666665543 55666654 35566554
No 217
>PRK10115 protease 2; Provisional
Probab=46.41 E-value=3.2e+02 Score=27.44 Aligned_cols=139 Identities=9% Similarity=-0.021 Sum_probs=72.1
Q ss_pred cCceEEEeC--CCCCcccCCCCCCCceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCC-CCceEeCCCCCccCCCcee
Q 019186 127 TNEVWSYDP--VTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPE-KDVWVPIPDLHRTHNSACT 203 (345)
Q Consensus 127 ~~~~~~yd~--~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~-~~~W~~~~~~~~~~~~~~~ 203 (345)
.+.++.|+. .+..|..+...+.. ........++.+|+.--.. .....+...+.. ..+|+.+-+.... ..--.
T Consensus 246 ~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ly~~tn~~---~~~~~l~~~~~~~~~~~~~l~~~~~~-~~i~~ 320 (686)
T PRK10115 246 TSEVLLLDAELADAEPFVFLPRRKD-HEYSLDHYQHRFYLRSNRH---GKNFGLYRTRVRDEQQWEELIPPREN-IMLEG 320 (686)
T ss_pred cccEEEEECcCCCCCceEEEECCCC-CEEEEEeCCCEEEEEEcCC---CCCceEEEecCCCcccCeEEECCCCC-CEEEE
Confidence 457888873 23443322222211 2223334567888875332 223456777776 5789877544222 22223
Q ss_pred EEEECCEEEEEec--CcceEEEEECCCCCeeecc-CCCCCCceEEE----c-CeE-EEEeC----cEEEEecCCc--eEE
Q 019186 204 GVVIGGKVHVLHK--GLSTVQVLDHMGLGWTVED-YGWLQGPMAIV----H-DSV-YLMSH----GLIIKQHRDV--RKV 268 (345)
Q Consensus 204 ~~~~~~~iyv~gG--~~~~i~~yd~~~~~W~~~~-~~~~~~~~~~~----~-~~l-~~~~~----~~i~~~d~~~--W~~ 268 (345)
....++.|++..- ....++.+|..++....+. ..+........ + +.+ +.+.. ..++.||.++ |+.
T Consensus 321 ~~~~~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~~ 400 (686)
T PRK10115 321 FTLFTDWLVVEERQRGLTSLRQINRKTREVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERRV 400 (686)
T ss_pred EEEECCEEEEEEEeCCEEEEEEEcCCCCceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcEEE
Confidence 4455777777643 4566888887666655544 22211111111 1 333 33344 8999999875 665
Q ss_pred ec
Q 019186 269 VA 270 (345)
Q Consensus 269 ~~ 270 (345)
+.
T Consensus 401 l~ 402 (686)
T PRK10115 401 LK 402 (686)
T ss_pred EE
Confidence 54
No 218
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=45.98 E-value=2.7e+02 Score=26.50 Aligned_cols=138 Identities=14% Similarity=0.093 Sum_probs=79.8
Q ss_pred CcEEEEEecCCCCeEEEEeCCCCCEEeCCCCCccccccceeEEEEE--CCEEEEEcCCCCCCCCCCCCCCCCcCcCceEE
Q 019186 55 ENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVST--AGKLFVLGGGSDAVDPLTGDQDGSFATNEVWS 132 (345)
Q Consensus 55 ~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~ 132 (345)
.+.+.|.- ...+++++-.+++=..+..+. ....+.+.+ +|..+.+|-. ...+++
T Consensus 188 ~n~laVal---g~~vylW~~~s~~v~~l~~~~-----~~~vtSv~ws~~G~~LavG~~----------------~g~v~i 243 (484)
T KOG0305|consen 188 ANVLAVAL---GQSVYLWSASSGSVTELCSFG-----EELVTSVKWSPDGSHLAVGTS----------------DGTVQI 243 (484)
T ss_pred CCeEEEEe---cceEEEEecCCCceEEeEecC-----CCceEEEEECCCCCEEEEeec----------------CCeEEE
Confidence 44444443 357888888888766665553 233343443 5777777754 346899
Q ss_pred EeCCCCCcccCCCCCC-CceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeE-E-EECC
Q 019186 133 YDPVTRQWSPRASMLV-PRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTG-V-VIGG 209 (345)
Q Consensus 133 yd~~t~~W~~~~~~~~-~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~-~-~~~~ 209 (345)
||..+.+ .+..+.. .....++...++.+...|..+. .+..+|....+=. +..+... +...++ . ..++
T Consensus 244 wD~~~~k--~~~~~~~~h~~rvg~laW~~~~lssGsr~~------~I~~~dvR~~~~~-~~~~~~H-~qeVCgLkws~d~ 313 (484)
T KOG0305|consen 244 WDVKEQK--KTRTLRGSHASRVGSLAWNSSVLSSGSRDG------KILNHDVRISQHV-VSTLQGH-RQEVCGLKWSPDG 313 (484)
T ss_pred Eehhhcc--ccccccCCcCceeEEEeccCceEEEecCCC------cEEEEEEecchhh-hhhhhcc-cceeeeeEECCCC
Confidence 9987664 4444444 3334455566888888887653 3677775543211 1112222 222222 1 2366
Q ss_pred EEEEEecCcceEEEEEC
Q 019186 210 KVHVLHKGLSTVQVLDH 226 (345)
Q Consensus 210 ~iyv~gG~~~~i~~yd~ 226 (345)
.....||.-+.+.++|.
T Consensus 314 ~~lASGgnDN~~~Iwd~ 330 (484)
T KOG0305|consen 314 NQLASGGNDNVVFIWDG 330 (484)
T ss_pred CeeccCCCccceEeccC
Confidence 66777777888888887
No 219
>PF11134 Phage_stabilise: Phage stabilisation protein; InterPro: IPR021098 This entry represents the Bacteriophage P22, Gp10, DNA-stabilising protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are phage proteins involved with stabilising the head assembly unit and condensed DNA within the capsid [].
Probab=45.86 E-value=2.6e+02 Score=26.16 Aligned_cols=170 Identities=9% Similarity=0.079 Sum_probs=78.4
Q ss_pred eeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCcc--C----CCceeE-----EEE-CCEEEEEecCcc
Q 019186 152 MFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRT--H----NSACTG-----VVI-GGKVHVLHKGLS 219 (345)
Q Consensus 152 ~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~--~----~~~~~~-----~~~-~~~iyv~gG~~~ 219 (345)
.++.+.+++.++.+|.-... ...+|-....+=.+++..+.. . +...+. ... +-.+|++. ...
T Consensus 234 ~~s~~~~~~t~~wlg~~~~G-----~~sVy~~~gyq~~RIST~~IE~~l~~ya~~ela~af~et~~f~~h~~l~ih-lp~ 307 (469)
T PF11134_consen 234 KHSKTKFGNTVAWLGHDATG-----APSVYRINGYQASRISTHAIEKALRSYAHDELAIAFMETYQFDGHEFLLIH-LPR 307 (469)
T ss_pred cceeeecCCEEEEeccCCCC-----CceEEEecCCceeeeccHHHHHHHHhhccHHHHHHHHHHhhcCceEEEEEE-cCC
Confidence 45667778888888764321 123343333333344432211 0 001111 112 33466665 456
Q ss_pred eEEEEECCCCCe----eeccCCCC----CC-ceEEEcCeEEEEeC--cEEEEecCCc---------eEEeccchhhc-cc
Q 019186 220 TVQVLDHMGLGW----TVEDYGWL----QG-PMAIVHDSVYLMSH--GLIIKQHRDV---------RKVVASASEFR-RR 278 (345)
Q Consensus 220 ~i~~yd~~~~~W----~~~~~~~~----~~-~~~~~~~~l~~~~~--~~i~~~d~~~---------W~~~~~~p~~~-~r 278 (345)
..++||..+++| ..+..... .+ ..+..++++.+=+. +.++..+++. |....++-... .|
T Consensus 308 ~tlcyD~at~~~~~qw~~l~tg~~~~~~R~~~~~f~~~q~~VGD~~~g~lg~L~~n~~~~yg~~~e~~~~tp~~~adgaR 387 (469)
T PF11134_consen 308 KTLCYDAATSQWGEQWFILKTGFYDEPYRAIDFMFFDNQITVGDKQNGLLGALDFNASTQYGDQIEHIRYTPMLKADGAR 387 (469)
T ss_pred ceEEEEcccCCcccceEEEeccccCCcceeeeeEEeCCeeEecccccceeEEecccchhhcCCccceEEEeeeecCCCce
Confidence 788999998855 44443332 11 11222333333332 4455444432 66655543211 22
Q ss_pred cee-------EEEEECCeEEEEcceecCCCCcccccccCceeeeccCCCCCceeEcCCC
Q 019186 279 IGF-------AMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPM 330 (345)
Q Consensus 279 ~~~-------~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~v~~~ 330 (345)
.+- ++....+++++.--.++...++..+...+....||-.. -|++++.-
T Consensus 388 vfd~eie~~tgv~~~a~~lfls~t~Dg~~~s~e~~~~~~~~~~yd~R~---~wrr~gr~ 443 (469)
T PF11134_consen 388 VFDFEIEASTGVAQIADRLFLSATTDGINYSREQMINQNAPGEYDKRL---LWRRLGRV 443 (469)
T ss_pred EEEEEEEEecCcccccceeEEEeecccccccHHHHHhcCCCceeccch---hhhhhhhh
Confidence 110 01111234444433333333343445666777777655 59888754
No 220
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.44 E-value=3.6e+02 Score=27.80 Aligned_cols=117 Identities=9% Similarity=0.119 Sum_probs=59.1
Q ss_pred cCceEEEeCCCCCcccCCCCCCCceeeeeeEe--CCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCcc-CCCcee
Q 019186 127 TNEVWSYDPVTRQWSPRASMLVPRAMFACCAL--KEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRT-HNSACT 203 (345)
Q Consensus 127 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~-~~~~~~ 203 (345)
.-.+|+++. |+.|+.-. +...-...+.+.+ ...+++..|-+ ..+-+||..+.+= +..+... .|. -.
T Consensus 229 qVKlWrmne-tKaWEvDt-crgH~nnVssvlfhp~q~lIlSnsED------ksirVwDm~kRt~--v~tfrrendRF-W~ 297 (1202)
T KOG0292|consen 229 QVKLWRMNE-TKAWEVDT-CRGHYNNVSSVLFHPHQDLILSNSED------KSIRVWDMTKRTS--VQTFRRENDRF-WI 297 (1202)
T ss_pred eeeEEEecc-ccceeehh-hhcccCCcceEEecCccceeEecCCC------ccEEEEecccccc--eeeeeccCCeE-EE
Confidence 457899976 78897532 2222222333333 33565655543 2366777665431 1112111 021 12
Q ss_pred EEEE-CCEEEEEecCcceEEEEECCCCCeeeccCCCCCCceEEEcCeEEEEeCcEEEEecCCc
Q 019186 204 GVVI-GGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQGPMAIVHDSVYLMSHGLIIKQHRDV 265 (345)
Q Consensus 204 ~~~~-~~~iyv~gG~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~d~~~ 265 (345)
.+++ ...+|..| .-+.++.|-+... .+..++.+|.+|.+....|..||..+
T Consensus 298 laahP~lNLfAAg-HDsGm~VFkleRE----------rpa~~v~~n~LfYvkd~~i~~~d~~t 349 (1202)
T KOG0292|consen 298 LAAHPELNLFAAG-HDSGMIVFKLERE----------RPAYAVNGNGLFYVKDRFIRSYDLRT 349 (1202)
T ss_pred EEecCCcceeeee-cCCceEEEEEccc----------CceEEEcCCEEEEEccceEEeeeccc
Confidence 2222 34566665 3444555544322 24456667777777777777777655
No 221
>PRK02888 nitrous-oxide reductase; Validated
Probab=44.78 E-value=3.2e+02 Score=26.99 Aligned_cols=174 Identities=10% Similarity=-0.067 Sum_probs=87.8
Q ss_pred cCceEEEeCCCCCcccCCCCCCCceeeeeeEe--CCeEEEEcCcC------CC-------CCCCceEEEEeCCCCc--eE
Q 019186 127 TNEVWSYDPVTRQWSPRASMLVPRAMFACCAL--KEKIVVAGGFT------SC-------RKSISQAEMYDPEKDV--WV 189 (345)
Q Consensus 127 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~gG~~------~~-------~~~~~~v~~yd~~~~~--W~ 189 (345)
...+.+.++..-+-.++-.+|.....|++... .+.=||+.+.. +. .++.+.+.+.|.++.+ |+
T Consensus 151 n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~q 230 (635)
T PRK02888 151 NTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQ 230 (635)
T ss_pred CcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccceEEEE
Confidence 45667777666555555555655555666554 34455554322 11 2233455556666543 54
Q ss_pred eC-CCCCccCCCceeEEEECC-EEEEEec---CcceEEEEECCCCCeeeccCCCCCCceEEEcCeEEEEeCcEEEEecCC
Q 019186 190 PI-PDLHRTHNSACTGVVIGG-KVHVLHK---GLSTVQVLDHMGLGWTVEDYGWLQGPMAIVHDSVYLMSHGLIIKQHRD 264 (345)
Q Consensus 190 ~~-~~~~~~~~~~~~~~~~~~-~iyv~gG---~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~d~~ 264 (345)
.. .. +.....+..++ .+|+... ...++...+.....|..+-.... ...++-+|+...++++.+-..|..
T Consensus 231 V~Vdg-----npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~-iea~vkdGK~~~V~gn~V~VID~~ 304 (635)
T PRK02888 231 VMVDG-----NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR-IEEAVKAGKFKTIGGSKVPVVDGR 304 (635)
T ss_pred EEeCC-----CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH-HHHhhhCCCEEEECCCEEEEEECC
Confidence 22 22 11222333333 4555431 12233344444444443311111 011223455444566778888887
Q ss_pred c-----eEEeccchhhcccceeEEEEE-CC-eEEEEcceecCCCCcccccccCceeeeccCCC
Q 019186 265 V-----RKVVASASEFRRRIGFAMIGM-GD-DIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE 320 (345)
Q Consensus 265 ~-----W~~~~~~p~~~~r~~~~~~~~-~~-~l~i~GG~~~~~~~~~~~~~~~~v~~yd~~~~ 320 (345)
+ +..+..+| .++..|++..- ++ .+|+.|+.. ++|-++|.++.
T Consensus 305 t~~~~~~~v~~yIP--VGKsPHGV~vSPDGkylyVanklS------------~tVSVIDv~k~ 353 (635)
T PRK02888 305 KAANAGSALTRYVP--VPKNPHGVNTSPDGKYFIANGKLS------------PTVTVIDVRKL 353 (635)
T ss_pred ccccCCcceEEEEE--CCCCccceEECCCCCEEEEeCCCC------------CcEEEEEChhh
Confidence 7 77777777 56667777644 44 466655532 36778888664
No 222
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=44.56 E-value=2e+02 Score=24.58 Aligned_cols=138 Identities=14% Similarity=0.038 Sum_probs=69.5
Q ss_pred CcEEEEEecCCCCeEEEEeCCCCCEEeCCCCCccccccceeEEEEEC-CEEEEEcCCCCCCCCCCCCCCCCcCcCceEEE
Q 019186 55 ENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTA-GKLFVLGGGSDAVDPLTGDQDGSFATNEVWSY 133 (345)
Q Consensus 55 ~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~y 133 (345)
.+.++.-|| ...++..|..+++-+..-. .. ...-|+++.-+ +.=++-|+.+ -++-++
T Consensus 126 enSi~~AgG--D~~~y~~dlE~G~i~r~~r-GH---tDYvH~vv~R~~~~qilsG~ED----------------GtvRvW 183 (325)
T KOG0649|consen 126 ENSILFAGG--DGVIYQVDLEDGRIQREYR-GH---TDYVHSVVGRNANGQILSGAED----------------GTVRVW 183 (325)
T ss_pred CCcEEEecC--CeEEEEEEecCCEEEEEEc-CC---cceeeeeeecccCcceeecCCC----------------ccEEEE
Confidence 566666665 4578889999987655321 11 13445555422 2233344432 357778
Q ss_pred eCCCCCcccC-C-----CCCCCceee--eeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeEE
Q 019186 134 DPVTRQWSPR-A-----SMLVPRAMF--ACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGV 205 (345)
Q Consensus 134 d~~t~~W~~~-~-----~~~~~r~~~--~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~ 205 (345)
|..|.+-.+. . ++..+..+. .+...+..-.++||-. ....++..+.+-+.+=+.|.+ . ..+
T Consensus 184 d~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp-------~lslwhLrsse~t~vfpipa~---v-~~v 252 (325)
T KOG0649|consen 184 DTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGP-------KLSLWHLRSSESTCVFPIPAR---V-HLV 252 (325)
T ss_pred eccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCC-------ceeEEeccCCCceEEEecccc---e-eEe
Confidence 8888775432 1 222222222 4555566667777632 245555555443333233333 2 233
Q ss_pred EECCEEEEEecCcceEEEEE
Q 019186 206 VIGGKVHVLHKGLSTVQVLD 225 (345)
Q Consensus 206 ~~~~~iyv~gG~~~~i~~yd 225 (345)
.+.+...+++|..+.+..|-
T Consensus 253 ~F~~d~vl~~G~g~~v~~~~ 272 (325)
T KOG0649|consen 253 DFVDDCVLIGGEGNHVQSYT 272 (325)
T ss_pred eeecceEEEeccccceeeee
Confidence 44444445555445555543
No 223
>PRK04043 tolB translocation protein TolB; Provisional
Probab=44.50 E-value=2.7e+02 Score=25.97 Aligned_cols=173 Identities=8% Similarity=0.035 Sum_probs=91.0
Q ss_pred CceEEEeCCCCCcccCCCCCCCceeeeeeEeCC-eEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeEEE
Q 019186 128 NEVWSYDPVTRQWSPRASMLVPRAMFACCALKE-KIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVV 206 (345)
Q Consensus 128 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~ 206 (345)
.++|++|+.+++=+.+...+... ......-++ +|.+.-...+ ..+++.+|..+..++.+...+.. .... ...
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g~~-~~~~~SPDG~~la~~~~~~g----~~~Iy~~dl~~g~~~~LT~~~~~-d~~p-~~S 285 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQGML-VVSDVSKDGSKLLLTMAPKG----QPDIYLYDTNTKTLTQITNYPGI-DVNG-NFV 285 (419)
T ss_pred CEEEEEECCCCcEEEEecCCCcE-EeeEECCCCCEEEEEEccCC----CcEEEEEECCCCcEEEcccCCCc-cCcc-EEC
Confidence 48999999888766665432211 111122244 4544432221 36799999999998887654432 1122 233
Q ss_pred EC-CEEEEEec--CcceEEEEECCCCCeeeccCCCCCCceEEEcCeEEEEeC-----------cEEEEecCCc--eEEec
Q 019186 207 IG-GKVHVLHK--GLSTVQVLDHMGLGWTVEDYGWLQGPMAIVHDSVYLMSH-----------GLIIKQHRDV--RKVVA 270 (345)
Q Consensus 207 ~~-~~iyv~gG--~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~l~~~~~-----------~~i~~~d~~~--W~~~~ 270 (345)
-| .+|++... ....++.+|+.+++.+.+............+|+..++.. ..++.+|.++ ++.+.
T Consensus 286 PDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT 365 (419)
T PRK04043 286 EDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLT 365 (419)
T ss_pred CCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECC
Confidence 34 45766643 345799999988888666432111112223444333321 3678888765 66664
Q ss_pred cchhhcccceeEEEEECCeEEEEcceecCCCCcccccccCceeeeccCCC
Q 019186 271 SASEFRRRIGFAMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAE 320 (345)
Q Consensus 271 ~~p~~~~r~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~yd~~~~ 320 (345)
... ....-...-+++.+++....+. ...++.+++..+
T Consensus 366 ~~~----~~~~p~~SPDG~~I~f~~~~~~---------~~~L~~~~l~g~ 402 (419)
T PRK04043 366 ANG----VNQFPRFSSDGGSIMFIKYLGN---------QSALGIIRLNYN 402 (419)
T ss_pred CCC----CcCCeEECCCCCEEEEEEccCC---------cEEEEEEecCCC
Confidence 421 1111122335554444332221 135777777665
No 224
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=44.27 E-value=2.3e+02 Score=25.08 Aligned_cols=140 Identities=14% Similarity=0.020 Sum_probs=82.4
Q ss_pred eeeeeEeCCeEEEEcCcCC---------------CCCCCceEEEEeCCCCc----eEeCCCCCccCCCceeE--E---EE
Q 019186 152 MFACCALKEKIVVAGGFTS---------------CRKSISQAEMYDPEKDV----WVPIPDLHRTHNSACTG--V---VI 207 (345)
Q Consensus 152 ~~~~~~~~~~iyv~gG~~~---------------~~~~~~~v~~yd~~~~~----W~~~~~~~~~~~~~~~~--~---~~ 207 (345)
+.++..+++.||.-|-... ..+..+.++.||.++++ |++- ..++..+..-+ + .+
T Consensus 39 YNAV~~vDd~IyFGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkes--ih~~~~WaGEVSdIlYdP~ 116 (339)
T PF09910_consen 39 YNAVEWVDDFIYFGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKES--IHDKTKWAGEVSDILYDPY 116 (339)
T ss_pred ceeeeeecceEEEeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecc--cCCccccccchhheeeCCC
Confidence 3455567888776543221 11234679999999886 5543 33331222222 2 23
Q ss_pred CCEEEEEec---CcceEEEEECCCCCeeeccCCCCCCceEEEcCeEEEEeC-----cEEEEecCCc--e--EEeccch--
Q 019186 208 GGKVHVLHK---GLSTVQVLDHMGLGWTVEDYGWLQGPMAIVHDSVYLMSH-----GLIIKQHRDV--R--KVVASAS-- 273 (345)
Q Consensus 208 ~~~iyv~gG---~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~l~~~~~-----~~i~~~d~~~--W--~~~~~~p-- 273 (345)
+++|++.-+ ..-.++..|.++++=+.+...+..-.+...+..+|-+.. ..+..+|..+ | +..+...
T Consensus 117 ~D~LLlAR~DGh~nLGvy~ldr~~g~~~~L~~~ps~KG~~~~D~a~F~i~~~~~g~~~i~~~Dli~~~~~~e~f~~~~s~ 196 (339)
T PF09910_consen 117 EDRLLLARADGHANLGVYSLDRRTGKAEKLSSNPSLKGTLVHDYACFGINNFHKGVSGIHCLDLISGKWVIESFDVSLSV 196 (339)
T ss_pred cCEEEEEecCCcceeeeEEEcccCCceeeccCCCCcCceEeeeeEEEeccccccCCceEEEEEccCCeEEEEecccccCC
Confidence 678888743 445578888888887777666555555556666666632 7899999877 8 3322111
Q ss_pred ---hhcccceeEEEEECCeEEEE
Q 019186 274 ---EFRRRIGFAMIGMGDDIYVI 293 (345)
Q Consensus 274 ---~~~~r~~~~~~~~~~~l~i~ 293 (345)
....|....++...+++|.|
T Consensus 197 Dg~~~~~~~~G~~~s~ynR~faF 219 (339)
T PF09910_consen 197 DGGPVIRPELGAMASAYNRLFAF 219 (339)
T ss_pred CCCceEeeccccEEEEeeeEEEE
Confidence 02344555667777777776
No 225
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=42.85 E-value=2.9e+02 Score=26.47 Aligned_cols=94 Identities=15% Similarity=0.065 Sum_probs=50.2
Q ss_pred CCeEEEEeCCCCCEEeCCCCCccccccceeEEEEE--CCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccC
Q 019186 66 ENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVST--AGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPR 143 (345)
Q Consensus 66 ~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~ 143 (345)
...++.++...++-.. +++.. -.-|.++.. +..+-|+-|+. -..+-+||+..+--..+
T Consensus 250 Eq~Lyll~t~g~s~~V--~L~k~---GPVhdv~W~~s~~EF~VvyGfM---------------PAkvtifnlr~~~v~df 309 (566)
T KOG2315|consen 250 EQTLYLLATQGESVSV--PLLKE---GPVHDVTWSPSGREFAVVYGFM---------------PAKVTIFNLRGKPVFDF 309 (566)
T ss_pred cceEEEEEecCceEEE--ecCCC---CCceEEEECCCCCEEEEEEecc---------------cceEEEEcCCCCEeEeC
Confidence 4466777776443222 23221 112333332 34566777763 34677888877643333
Q ss_pred CCCCCCceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCC
Q 019186 144 ASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEK 185 (345)
Q Consensus 144 ~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~ 185 (345)
+.-| |.. ....=.|.|.++.|..+ -..+++++|..+
T Consensus 310 ~egp--RN~-~~fnp~g~ii~lAGFGN---L~G~mEvwDv~n 345 (566)
T KOG2315|consen 310 PEGP--RNT-AFFNPHGNIILLAGFGN---LPGDMEVWDVPN 345 (566)
T ss_pred CCCC--ccc-eEECCCCCEEEEeecCC---CCCceEEEeccc
Confidence 3322 321 11122567778877764 356799999876
No 226
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=42.46 E-value=2.7e+02 Score=25.43 Aligned_cols=105 Identities=12% Similarity=0.003 Sum_probs=53.5
Q ss_pred CcEEEEEecCCCCeEEEEeCCCCCEEeCCCCCccccccceeEEEE-ECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEE
Q 019186 55 ENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVS-TAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSY 133 (345)
Q Consensus 55 ~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~y 133 (345)
+..+|+.+. ...+..+|+.+++ .+...+.. ....+++. -+|+..+.+.+ ..+++.++
T Consensus 48 gr~~yv~~r--dg~vsviD~~~~~--~v~~i~~G---~~~~~i~~s~DG~~~~v~n~---------------~~~~v~v~ 105 (369)
T PF02239_consen 48 GRYLYVANR--DGTVSVIDLATGK--VVATIKVG---GNPRGIAVSPDGKYVYVANY---------------EPGTVSVI 105 (369)
T ss_dssp SSEEEEEET--TSEEEEEETTSSS--EEEEEE-S---SEEEEEEE--TTTEEEEEEE---------------ETTEEEEE
T ss_pred CCEEEEEcC--CCeEEEEECCccc--EEEEEecC---CCcceEEEcCCCCEEEEEec---------------CCCceeEe
Confidence 678998864 3589999999887 33333322 23334443 46665555544 24678899
Q ss_pred eCCCCCcc-cCC--CC----CCCceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCC
Q 019186 134 DPVTRQWS-PRA--SM----LVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKD 186 (345)
Q Consensus 134 d~~t~~W~-~~~--~~----~~~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~ 186 (345)
|..|.+=. .++ .+ +..|...-...-.+..|++.-.+ ..++++.|....
T Consensus 106 D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd-----~~~I~vVdy~d~ 160 (369)
T PF02239_consen 106 DAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD-----TGEIWVVDYSDP 160 (369)
T ss_dssp ETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT-----TTEEEEEETTTS
T ss_pred ccccccceeecccccccccccCCCceeEEecCCCCEEEEEEcc-----CCeEEEEEeccc
Confidence 98876522 222 11 12232222222345555553222 456788776553
No 227
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=42.39 E-value=2.4e+02 Score=24.85 Aligned_cols=132 Identities=15% Similarity=0.189 Sum_probs=64.8
Q ss_pred CCeEEEEcCcCCCCCCCceEEE---EeCCCCceEeCCCCCccCCCceeEEEE------CCEEEEEecCcceEEEEECCCC
Q 019186 159 KEKIVVAGGFTSCRKSISQAEM---YDPEKDVWVPIPDLHRTHNSACTGVVI------GGKVHVLHKGLSTVQVLDHMGL 229 (345)
Q Consensus 159 ~~~iyv~gG~~~~~~~~~~v~~---yd~~~~~W~~~~~~~~~~~~~~~~~~~------~~~iyv~gG~~~~i~~yd~~~~ 229 (345)
+|..++-||++-. +.. |.-..|.|..- ++.++++ ++...+..|.-..+..+|.+++
T Consensus 58 ~gs~~aSgG~Dr~------I~LWnv~gdceN~~~lk---------gHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG 122 (338)
T KOG0265|consen 58 DGSCFASGGSDRA------IVLWNVYGDCENFWVLK---------GHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETG 122 (338)
T ss_pred CCCeEeecCCcce------EEEEeccccccceeeec---------cccceeEeeeeccCCCEEEEecCCceEEEEecccc
Confidence 6777788887632 333 45566677632 2222222 3444444447788999999888
Q ss_pred CeeeccCCCC----CCceEEEcCeEEEEeC--cEEEEecCCceEEeccchhhcccceeEEEEECC--eEEEEcceecCCC
Q 019186 230 GWTVEDYGWL----QGPMAIVHDSVYLMSH--GLIIKQHRDVRKVVASASEFRRRIGFAMIGMGD--DIYVIGGVIGPDR 301 (345)
Q Consensus 230 ~W~~~~~~~~----~~~~~~~~~~l~~~~~--~~i~~~d~~~W~~~~~~p~~~~r~~~~~~~~~~--~l~i~GG~~~~~~ 301 (345)
+=..-...-. ....+-.+-.|.+-+. ..+..+|..+-..+...+ .++.-.++.+++ .=.+.||.+
T Consensus 123 ~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~---~kyqltAv~f~d~s~qv~sggId---- 195 (338)
T KOG0265|consen 123 KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE---NKYQLTAVGFKDTSDQVISGGID---- 195 (338)
T ss_pred eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc---cceeEEEEEecccccceeecccc----
Confidence 6543211100 0011112333444443 566667765433333322 334334444432 234455544
Q ss_pred CcccccccCceeeeccCCC
Q 019186 302 WNWDIKPMSDVDVLTVGAE 320 (345)
Q Consensus 302 ~~~~~~~~~~v~~yd~~~~ 320 (345)
+++.+||+..+
T Consensus 196 --------n~ikvWd~r~~ 206 (338)
T KOG0265|consen 196 --------NDIKVWDLRKN 206 (338)
T ss_pred --------CceeeeccccC
Confidence 25667777544
No 228
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=42.24 E-value=2.4e+02 Score=24.80 Aligned_cols=93 Identities=13% Similarity=0.073 Sum_probs=51.8
Q ss_pred CceEEEeCCCCCcccCCCCCCC---ceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeE
Q 019186 128 NEVWSYDPVTRQWSPRASMLVP---RAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTG 204 (345)
Q Consensus 128 ~~~~~yd~~t~~W~~~~~~~~~---r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~ 204 (345)
.++..+|+.+.+=.. .+... .....+.-.+.+.|+-||.+.. ...+|.....-. ..++..-..-.++
T Consensus 166 ~TCalWDie~g~~~~--~f~GH~gDV~slsl~p~~~ntFvSg~cD~~------aklWD~R~~~c~--qtF~ghesDINsv 235 (343)
T KOG0286|consen 166 MTCALWDIETGQQTQ--VFHGHTGDVMSLSLSPSDGNTFVSGGCDKS------AKLWDVRSGQCV--QTFEGHESDINSV 235 (343)
T ss_pred ceEEEEEcccceEEE--EecCCcccEEEEecCCCCCCeEEecccccc------eeeeeccCccee--EeecccccccceE
Confidence 568889998876322 11111 1111111227889999998753 667777666322 2233221112222
Q ss_pred E-EECCEEEEEecCcceEEEEECCCCC
Q 019186 205 V-VIGGKVHVLHKGLSTVQVLDHMGLG 230 (345)
Q Consensus 205 ~-~~~~~iyv~gG~~~~i~~yd~~~~~ 230 (345)
. .-+|.-++.|..-.+.-.||++.++
T Consensus 236 ~ffP~G~afatGSDD~tcRlyDlRaD~ 262 (343)
T KOG0286|consen 236 RFFPSGDAFATGSDDATCRLYDLRADQ 262 (343)
T ss_pred EEccCCCeeeecCCCceeEEEeecCCc
Confidence 2 2366677777666777889998764
No 229
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.18 E-value=2.3e+02 Score=24.27 Aligned_cols=51 Identities=12% Similarity=0.205 Sum_probs=31.5
Q ss_pred CCCCceE--eCCCCCccCCCceeEEEECCEEEEEecCcceEEEEECC-CCCeeecc
Q 019186 183 PEKDVWV--PIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHM-GLGWTVED 235 (345)
Q Consensus 183 ~~~~~W~--~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~i~~yd~~-~~~W~~~~ 235 (345)
.+.+.|+ .+.++|.+ .. ...-.+.|.+..++|..+.+.++-.. .++|..+.
T Consensus 242 ~e~e~wk~tll~~f~~~-~w-~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw~~v~ 295 (299)
T KOG1332|consen 242 EEYEPWKKTLLEEFPDV-VW-RVSWSLSGNILAVSGGDNKVTLWKENVDGKWEEVG 295 (299)
T ss_pred CccCcccccccccCCcc-eE-EEEEeccccEEEEecCCcEEEEEEeCCCCcEEEcc
Confidence 3456675 33556666 43 34455666666665557777777665 45999875
No 230
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=39.82 E-value=1.3e+02 Score=28.85 Aligned_cols=94 Identities=17% Similarity=0.216 Sum_probs=52.7
Q ss_pred CcCceEEEeCCCCCcccCC--CCCCCceeeeeeE--eCCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCc
Q 019186 126 ATNEVWSYDPVTRQWSPRA--SMLVPRAMFACCA--LKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSA 201 (345)
Q Consensus 126 ~~~~~~~yd~~t~~W~~~~--~~~~~r~~~~~~~--~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~ 201 (345)
..-+..+|+...++-+.+. ++|.+ +...++. -.+...++|-.++ ++..||..++.=+.+.....+ .
T Consensus 234 ~~~d~ciYE~~r~klqrvsvtsipL~-s~v~~ca~sp~E~kLvlGC~Dg------SiiLyD~~~~~t~~~ka~~~P---~ 303 (545)
T PF11768_consen 234 PSADSCIYECSRNKLQRVSVTSIPLP-SQVICCARSPSEDKLVLGCEDG------SIILYDTTRGVTLLAKAEFIP---T 303 (545)
T ss_pred ceeEEEEEEeecCceeEEEEEEEecC-CcceEEecCcccceEEEEecCC------eEEEEEcCCCeeeeeeecccc---e
Confidence 4556677887776654433 22222 1112222 2455666665443 489999887753322111111 1
Q ss_pred eeEEEECCEEEEEecCcceEEEEECCCC
Q 019186 202 CTGVVIGGKVHVLHKGLSTVQVLDHMGL 229 (345)
Q Consensus 202 ~~~~~~~~~iyv~gG~~~~i~~yd~~~~ 229 (345)
..+-.-+|.++++|+..+.+++||..-+
T Consensus 304 ~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 304 LIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 1122337889999988899999998655
No 231
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=38.79 E-value=3.1e+02 Score=27.32 Aligned_cols=104 Identities=10% Similarity=0.118 Sum_probs=56.6
Q ss_pred CcEEEEEecCCCCeEEEEeCCCCCEEeCCCCCccccccceeEEEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEe
Q 019186 55 ENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYD 134 (345)
Q Consensus 55 ~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd 134 (345)
.+.-|+..|.....+...|..++.--.+- ... ...-.+++......|+..|.. ...+-+||
T Consensus 545 PNs~Y~aTGSsD~tVRlWDv~~G~~VRiF--~GH--~~~V~al~~Sp~Gr~LaSg~e---------------d~~I~iWD 605 (707)
T KOG0263|consen 545 PNSNYVATGSSDRTVRLWDVSTGNSVRIF--TGH--KGPVTALAFSPCGRYLASGDE---------------DGLIKIWD 605 (707)
T ss_pred CcccccccCCCCceEEEEEcCCCcEEEEe--cCC--CCceEEEEEcCCCceEeeccc---------------CCcEEEEE
Confidence 56667777766677777887777543321 111 122334555444455555432 34588899
Q ss_pred CCCCCcccCCCCCCCce-eeee-eEeCCeEEEEcCcCCCCCCCceEEEEeCCC
Q 019186 135 PVTRQWSPRASMLVPRA-MFAC-CALKEKIVVAGGFTSCRKSISQAEMYDPEK 185 (345)
Q Consensus 135 ~~t~~W~~~~~~~~~r~-~~~~-~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~ 185 (345)
..+.+ .+..+..... ..++ ...+|.+.+.||.+. +|.++|..+
T Consensus 606 l~~~~--~v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dn------sV~lWD~~~ 650 (707)
T KOG0263|consen 606 LANGS--LVKQLKGHTGTIYSLSFSRDGNVLASGGADN------SVRLWDLTK 650 (707)
T ss_pred cCCCc--chhhhhcccCceeEEEEecCCCEEEecCCCC------eEEEEEchh
Confidence 98754 2222222211 1222 234888999988763 477777543
No 232
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=38.73 E-value=2.1e+02 Score=23.19 Aligned_cols=59 Identities=19% Similarity=0.160 Sum_probs=32.3
Q ss_pred CceEEEeCCCCCcccCCCCCCCceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCC
Q 019186 128 NEVWSYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDL 194 (345)
Q Consensus 128 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~ 194 (345)
..+..||...+ .+..++......-.-.-+|+..+++|..+. ...++.||..+ ...+...
T Consensus 83 ~~v~lyd~~~~---~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~---~G~l~~wd~~~--~~~i~~~ 141 (194)
T PF08662_consen 83 AKVTLYDVKGK---KIFSFGTQPRNTISWSPDGRFLVLAGFGNL---NGDLEFWDVRK--KKKISTF 141 (194)
T ss_pred cccEEEcCccc---EeEeecCCCceEEEECCCCCEEEEEEccCC---CcEEEEEECCC--CEEeecc
Confidence 36888998633 333333221121112227888888886532 35689999883 4444433
No 233
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=37.86 E-value=1.1e+02 Score=28.61 Aligned_cols=128 Identities=11% Similarity=0.040 Sum_probs=66.5
Q ss_pred ECCEEEEEecCcceEEEEECCCC-C-eeeccCC--CC-CCceEEEcCeEEEEeC-cEEEEecCCceEEeccchhhcccce
Q 019186 207 IGGKVHVLHKGLSTVQVLDHMGL-G-WTVEDYG--WL-QGPMAIVHDSVYLMSH-GLIIKQHRDVRKVVASASEFRRRIG 280 (345)
Q Consensus 207 ~~~~iyv~gG~~~~i~~yd~~~~-~-W~~~~~~--~~-~~~~~~~~~~l~~~~~-~~i~~~d~~~W~~~~~~p~~~~r~~ 280 (345)
..+.|++.+|.-..+..+|.... . -+..... +. .......+..+...+. ..+...|.++-+.+..+.. .....
T Consensus 225 ~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~ 303 (503)
T KOG0282|consen 225 KKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL-DKVPT 303 (503)
T ss_pred ceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec-CCCce
Confidence 35677777776666776665431 1 1111000 00 1111222333444443 6777778887444443331 11111
Q ss_pred eEEEEECC-eEEEEcceecCCCCcccccccCceeeeccCCCCCceeEcCCCCCcceeEE
Q 019186 281 FAMIGMGD-DIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMTRCRGTIL 338 (345)
Q Consensus 281 ~~~~~~~~-~l~i~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~v~~~~~~r~~~~ 338 (345)
+.-..-++ +++++||.++. ....|+....-|..||-..+ .|..+.-++..|+.|.
T Consensus 304 cvkf~pd~~n~fl~G~sd~k-i~~wDiRs~kvvqeYd~hLg--~i~~i~F~~~g~rFis 359 (503)
T KOG0282|consen 304 CVKFHPDNQNIFLVGGSDKK-IRQWDIRSGKVVQEYDRHLG--AILDITFVDEGRRFIS 359 (503)
T ss_pred eeecCCCCCcEEEEecCCCc-EEEEeccchHHHHHHHhhhh--heeeeEEccCCceEee
Confidence 21122344 89999997653 22233444445666777776 7888888888887753
No 234
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=37.38 E-value=1.8e+02 Score=29.80 Aligned_cols=118 Identities=8% Similarity=-0.006 Sum_probs=69.3
Q ss_pred EEECCEEEEEecCcceEEEEECCCCCeeeccCCCC-CCceEEEcCeEEEEeC--cEEEEecCCceEEeccchhhccccee
Q 019186 205 VVIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWL-QGPMAIVHDSVYLMSH--GLIIKQHRDVRKVVASASEFRRRIGF 281 (345)
Q Consensus 205 ~~~~~~iyv~gG~~~~i~~yd~~~~~W~~~~~~~~-~~~~~~~~~~l~~~~~--~~i~~~d~~~W~~~~~~p~~~~r~~~ 281 (345)
..++..-.+.||....+..+|..+.+=........ ...+.-.+++..+.|. +.|..-|+++.+.+....- .-..-
T Consensus 143 ~~~~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~a--Hs~si 220 (1118)
T KOG1275|consen 143 LHMGPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDA--HSGSI 220 (1118)
T ss_pred hccCCcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeec--cccce
Confidence 34466778888877788889988876554432222 2344456888888887 8999999988666654431 11111
Q ss_pred EEEEECCeEEEEcceecCCCCcccccccCceeeeccCCCCCceeEcCCCC
Q 019186 282 AMIGMGDDIYVIGGVIGPDRWNWDIKPMSDVDVLTVGAERPTWRQVSPMT 331 (345)
Q Consensus 282 ~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~yd~~~~~~~W~~v~~~~ 331 (345)
.-..+.|.++|..|+.....+.. .-.-|-+||+..- +.+++++
T Consensus 221 SDfDv~GNlLitCG~S~R~~~l~---~D~FvkVYDLRmm----ral~PI~ 263 (1118)
T KOG1275|consen 221 SDFDVQGNLLITCGYSMRRYNLA---MDPFVKVYDLRMM----RALSPIQ 263 (1118)
T ss_pred eeeeccCCeEEEeeccccccccc---ccchhhhhhhhhh----hccCCcc
Confidence 12234566777777655421110 1124558888743 4565543
No 235
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=37.31 E-value=1.2e+02 Score=29.57 Aligned_cols=45 Identities=11% Similarity=0.014 Sum_probs=29.5
Q ss_pred cEEEEecCCc-eEEeccchhhc-ccceeEEEEECCeEEEEcceecCC
Q 019186 256 GLIIKQHRDV-RKVVASASEFR-RRIGFAMIGMGDDIYVIGGVIGPD 300 (345)
Q Consensus 256 ~~i~~~d~~~-W~~~~~~p~~~-~r~~~~~~~~~~~l~i~GG~~~~~ 300 (345)
+.+..|++.. =+.+.+-+.+. .|..--+-.++|+++|+-|++..+
T Consensus 742 g~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~S 788 (1012)
T KOG1445|consen 742 GTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSS 788 (1012)
T ss_pred ceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccc
Confidence 6788888876 34443333222 455445557799999999988764
No 236
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=37.21 E-value=3e+02 Score=24.44 Aligned_cols=162 Identities=15% Similarity=0.108 Sum_probs=83.0
Q ss_pred ceEEEeCCCCC-cccCCC----CCCCceeeeeeEeCCeEEEEcCc-----CCCCCCCceEEEEeCCCCceEeC-CC-CCc
Q 019186 129 EVWSYDPVTRQ-WSPRAS----MLVPRAMFACCALKEKIVVAGGF-----TSCRKSISQAEMYDPEKDVWVPI-PD-LHR 196 (345)
Q Consensus 129 ~~~~yd~~t~~-W~~~~~----~~~~r~~~~~~~~~~~iyv~gG~-----~~~~~~~~~v~~yd~~~~~W~~~-~~-~~~ 196 (345)
.++++++.+.. ++.+.. .+..|..=..+.-+|.+|+-... .........++.+||. ....++ .+ +..
T Consensus 86 g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~~~~l~~~~~~~ 164 (307)
T COG3386 86 GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GGVVRLLDDDLTI 164 (307)
T ss_pred ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-CCEEEeecCcEEe
Confidence 35556654333 233332 23334444445556777665433 1222334579999984 444443 22 222
Q ss_pred cCCCceeEEEECC-EEEEEecCcceEEEEECCC--------CCeeeccCCCC--CCceEEEcCeEEEEeC---cEEEEec
Q 019186 197 THNSACTGVVIGG-KVHVLHKGLSTVQVLDHMG--------LGWTVEDYGWL--QGPMAIVHDSVYLMSH---GLIIKQH 262 (345)
Q Consensus 197 ~~~~~~~~~~~~~-~iyv~gG~~~~i~~yd~~~--------~~W~~~~~~~~--~~~~~~~~~~l~~~~~---~~i~~~d 262 (345)
+ ..-+..-++ .+|+.--..+.+++|+... +.+......+. -...+--+|.+|+... ..+..|+
T Consensus 165 ~---NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~ 241 (307)
T COG3386 165 P---NGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFN 241 (307)
T ss_pred c---CceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEEC
Confidence 2 222233455 6888764557888887652 12333222111 3344446889996433 4999999
Q ss_pred CCceEEeccchhhcccceeEEEEE-C---CeEEEEccee
Q 019186 263 RDVRKVVASASEFRRRIGFAMIGM-G---DDIYVIGGVI 297 (345)
Q Consensus 263 ~~~W~~~~~~p~~~~r~~~~~~~~-~---~~l~i~GG~~ 297 (345)
++ ++.+.....+..+ .+.+.+ + +.|||..-..
T Consensus 242 pd-G~l~~~i~lP~~~--~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 242 PD-GKLLGEIKLPVKR--PTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred CC-CcEEEEEECCCCC--CccceEeCCCcCEEEEEecCC
Confidence 99 5555544422222 233333 2 5788876544
No 237
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=36.83 E-value=2.3e+02 Score=23.08 Aligned_cols=73 Identities=10% Similarity=0.089 Sum_probs=43.0
Q ss_pred CCeEEEEeCCCCCEEeCCCCCc--cccccceeEEEEECCE-EEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCccc
Q 019186 66 ENLWQLYDPLRDLWITLPVLPS--KIRHLAHFGVVSTAGK-LFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSP 142 (345)
Q Consensus 66 ~~~~~~yd~~~~~W~~~~~~~~--~~~~~~~~~~~~~~~~-lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~ 142 (345)
...+|++|..+++|..+..-+. ...|. ...-..+.. ++++|...+... .--.++.|++.+++-+.
T Consensus 87 iGkIYIkn~~~~~~~~L~i~~~~~k~sPK--~i~WiDD~~L~vIIG~a~GTvS----------~GGnLy~~nl~tg~~~~ 154 (200)
T PF15525_consen 87 IGKIYIKNLNNNNWWSLQIDQNEEKYSPK--YIEWIDDNNLAVIIGYAHGTVS----------KGGNLYKYNLNTGNLTE 154 (200)
T ss_pred ceeEEEEecCCCceEEEEecCcccccCCc--eeEEecCCcEEEEEccccceEc----------cCCeEEEEEccCCceeE
Confidence 6688999999999876633222 11112 223333444 555554333221 34579999999998777
Q ss_pred CCCCCCCc
Q 019186 143 RASMLVPR 150 (345)
Q Consensus 143 ~~~~~~~r 150 (345)
+-+....+
T Consensus 155 ly~~~dkk 162 (200)
T PF15525_consen 155 LYEWKDKK 162 (200)
T ss_pred eeeccccc
Confidence 76654433
No 238
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=36.50 E-value=3.1e+02 Score=24.44 Aligned_cols=90 Identities=12% Similarity=0.129 Sum_probs=51.6
Q ss_pred CceEEEEeCCCCc-eEeCCCCCccCCCceeEE---EECCEEEEEecCcceEEEEEC-CCCCeeeccCCCC-CCceEEE--
Q 019186 175 ISQAEMYDPEKDV-WVPIPDLHRTHNSACTGV---VIGGKVHVLHKGLSTVQVLDH-MGLGWTVEDYGWL-QGPMAIV-- 246 (345)
Q Consensus 175 ~~~v~~yd~~~~~-W~~~~~~~~~~~~~~~~~---~~~~~iyv~gG~~~~i~~yd~-~~~~W~~~~~~~~-~~~~~~~-- 246 (345)
.+++++|....+. |+....+... .....++ ...++|. .++.-...+.+.. ..++|....-..+ +-++..+
T Consensus 31 ~~evhiy~~~~~~~w~~~htls~H-d~~vtgvdWap~snrIv-tcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~W 108 (361)
T KOG1523|consen 31 NHEVHIYSMLGADLWEPAHTLSEH-DKIVTGVDWAPKSNRIV-TCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKW 108 (361)
T ss_pred CceEEEEEecCCCCceeceehhhh-CcceeEEeecCCCCcee-EccCCCCccccccCCCCeeccceeEEEeccceeeEee
Confidence 4679999988888 9987665544 2222222 2244554 3333444556665 7778876543333 2222222
Q ss_pred --cCeEEEEeC----cEEEEecCCc-e
Q 019186 247 --HDSVYLMSH----GLIIKQHRDV-R 266 (345)
Q Consensus 247 --~~~l~~~~~----~~i~~~d~~~-W 266 (345)
++..|..|+ -.|+.|+-++ |
T Consensus 109 sP~enkFAVgSgar~isVcy~E~ENdW 135 (361)
T KOG1523|consen 109 SPKENKFAVGSGARLISVCYYEQENDW 135 (361)
T ss_pred cCcCceEEeccCccEEEEEEEecccce
Confidence 444455544 6788888888 7
No 239
>PRK01742 tolB translocation protein TolB; Provisional
Probab=36.39 E-value=3.6e+02 Score=25.09 Aligned_cols=159 Identities=9% Similarity=-0.025 Sum_probs=72.9
Q ss_pred CceEEEeCCCCCcccCCCCCCCceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeEEEE
Q 019186 128 NEVWSYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVI 207 (345)
Q Consensus 128 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~ 207 (345)
..++++|..+++-+.+...+... ......-+++..++....+. ...++.+|..+...+.+..-... . ......-
T Consensus 228 ~~i~i~dl~tg~~~~l~~~~g~~-~~~~wSPDG~~La~~~~~~g---~~~Iy~~d~~~~~~~~lt~~~~~-~-~~~~wSp 301 (429)
T PRK01742 228 SQLVVHDLRSGARKVVASFRGHN-GAPAFSPDGSRLAFASSKDG---VLNIYVMGANGGTPSQLTSGAGN-N-TEPSWSP 301 (429)
T ss_pred cEEEEEeCCCCceEEEecCCCcc-CceeECCCCCEEEEEEecCC---cEEEEEEECCCCCeEeeccCCCC-c-CCEEECC
Confidence 46899999887655554433211 11111225544333322111 23588889888776665432211 1 1122333
Q ss_pred CCE-EEEEec--CcceEEEEECCCCCeeeccCCCCCCceEEEcC-eEEEEeCcEEEEecCCc--eEEeccchhhccccee
Q 019186 208 GGK-VHVLHK--GLSTVQVLDHMGLGWTVEDYGWLQGPMAIVHD-SVYLMSHGLIIKQHRDV--RKVVASASEFRRRIGF 281 (345)
Q Consensus 208 ~~~-iyv~gG--~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~-~l~~~~~~~i~~~d~~~--W~~~~~~p~~~~r~~~ 281 (345)
+++ |++... ....++.++.....-..+... ........+| .|++.+...++.+|..+ ++.+..-. . ...
T Consensus 302 DG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~-~~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~~~---~-~~~ 376 (429)
T PRK01742 302 DGQSILFTSDRSGSPQVYRMSASGGGASLVGGR-GYSAQISADGKTLVMINGDNVVKQDLTSGSTEVLSSTF---L-DES 376 (429)
T ss_pred CCCEEEEEECCCCCceEEEEECCCCCeEEecCC-CCCccCCCCCCEEEEEcCCCEEEEECCCCCeEEecCCC---C-CCC
Confidence 454 554432 234556666554433333211 0111112244 45455556677778765 55443211 1 111
Q ss_pred EEEEECCeEEEEccee
Q 019186 282 AMIGMGDDIYVIGGVI 297 (345)
Q Consensus 282 ~~~~~~~~l~i~GG~~ 297 (345)
....-+++.++++..+
T Consensus 377 ~~~sPdG~~i~~~s~~ 392 (429)
T PRK01742 377 PSISPNGIMIIYSSTQ 392 (429)
T ss_pred ceECCCCCEEEEEEcC
Confidence 1233467777776643
No 240
>COG3940 Predicted beta-xylosidase [General function prediction only]
Probab=36.37 E-value=2.5e+02 Score=23.32 Aligned_cols=113 Identities=12% Similarity=0.112 Sum_probs=62.4
Q ss_pred cccC--CCCCCCceeeeeeEeCCeEEEEcCcC-----CCCCCCceEEEE-----eCCCCceEeCCCCCccCCC----cee
Q 019186 140 WSPR--ASMLVPRAMFACCALKEKIVVAGGFT-----SCRKSISQAEMY-----DPEKDVWVPIPDLHRTHNS----ACT 203 (345)
Q Consensus 140 W~~~--~~~~~~r~~~~~~~~~~~iyv~gG~~-----~~~~~~~~v~~y-----d~~~~~W~~~~~~~~~~~~----~~~ 203 (345)
|++. ++|.......-+..++|+-|+.-... ..+.+.+.+.+. ||-++.|.+-+....+ .. -.+
T Consensus 58 wrk~esgpms~liwapeih~ingkwyiyfaaa~ta~~k~g~f~hrmfvlene~anpltg~w~ekgqikt~-wesfsldat 136 (324)
T COG3940 58 WRKHESGPMSNLIWAPEIHFINGKWYIYFAAAPTANIKDGTFNHRMFVLENENANPLTGNWVEKGQIKTA-WESFSLDAT 136 (324)
T ss_pred EeccCCCchhhcccccceeEEcceEEEEEeecCcccccccccceeEEEEecCCCCCCcccceecceeccc-hhcceeeee
Confidence 5553 34444455566667788766653321 112223333333 5778899887776655 22 223
Q ss_pred EEEECCEEEEEec-------CcceEEEEECCCCCeeeccCCCC-----------------CCceEEEcCeEEEEe
Q 019186 204 GVVIGGKVHVLHK-------GLSTVQVLDHMGLGWTVEDYGWL-----------------QGPMAIVHDSVYLMS 254 (345)
Q Consensus 204 ~~~~~~~iyv~gG-------~~~~i~~yd~~~~~W~~~~~~~~-----------------~~~~~~~~~~l~~~~ 254 (345)
.+.+++++|.+-- ..+.++.-++ .+-|+.....-. +.++...+|+||+.=
T Consensus 137 tfeh~gk~yyvwaqkdp~i~gnsniyiaem-enpwtikgepvmlskpe~dwe~~gfwvnegpav~k~ngkifi~y 210 (324)
T COG3940 137 TFEHNGKLYYVWAQKDPNIKGNSNIYIAEM-ENPWTIKGEPVMLSKPELDWEIKGFWVNEGPAVLKKNGKIFITY 210 (324)
T ss_pred eeeeCCEEEEEEeccCCCccCCcceEEEec-cCCceecCceEEecCCCcccEEEEEEecCCceEEEECCEEEEEE
Confidence 4577888887743 3455555544 345654321100 566777788888764
No 241
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=36.28 E-value=4.3e+02 Score=26.05 Aligned_cols=82 Identities=15% Similarity=0.122 Sum_probs=41.9
Q ss_pred cCceEEEeCCCCCcccCCCCCCCceeeeeeEe-CCeEEEEcCcCCCCCCCceEEEEeCCCC--ceEeCCCCCccCCCcee
Q 019186 127 TNEVWSYDPVTRQWSPRASMLVPRAMFACCAL-KEKIVVAGGFTSCRKSISQAEMYDPEKD--VWVPIPDLHRTHNSACT 203 (345)
Q Consensus 127 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~ 203 (345)
.-.+..+|....+-.+--.... -.-.++++- ++.-++++|.+. .+..|...++ +|........+.+.--+
T Consensus 224 ~G~V~FWd~~~gTLiqS~~~h~-adVl~Lav~~~~d~vfsaGvd~------~ii~~~~~~~~~~wv~~~~r~~h~hdvrs 296 (691)
T KOG2048|consen 224 AGTVTFWDSIFGTLIQSHSCHD-ADVLALAVADNEDRVFSAGVDP------KIIQYSLTTNKSEWVINSRRDLHAHDVRS 296 (691)
T ss_pred CceEEEEcccCcchhhhhhhhh-cceeEEEEcCCCCeEEEccCCC------ceEEEEecCCccceeeeccccCCccccee
Confidence 4467788887765322211111 122344444 334455566553 3666655543 58877554433245556
Q ss_pred EEEECCEEEEEec
Q 019186 204 GVVIGGKVHVLHK 216 (345)
Q Consensus 204 ~~~~~~~iyv~gG 216 (345)
.++++. ..+.||
T Consensus 297 ~av~~~-~l~sgG 308 (691)
T KOG2048|consen 297 MAVIEN-ALISGG 308 (691)
T ss_pred eeeecc-eEEecc
Confidence 666666 344555
No 242
>PF13013 F-box-like_2: F-box-like domain
Probab=35.95 E-value=50 Score=24.21 Aligned_cols=29 Identities=14% Similarity=-0.022 Sum_probs=24.7
Q ss_pred CCCChHHHHHHhhccCCCcchhhHHHhhH
Q 019186 5 IEGLPDAVALRCLARVPFFLHPKLELVSR 33 (345)
Q Consensus 5 ~~~lp~~~~~~~l~~~p~~~~~~~~~~~~ 33 (345)
+.-||+||+..|+.......+..+...++
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 44599999999999998888888777776
No 243
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=35.55 E-value=3.1e+02 Score=26.96 Aligned_cols=95 Identities=11% Similarity=0.173 Sum_probs=53.5
Q ss_pred CceEEEeCCCCC-cccCCCCCCCceee-eee--EeCCeEEEEcCcCCCCCCCceEEEEeCCCCceEe--------CCCCC
Q 019186 128 NEVWSYDPVTRQ-WSPRASMLVPRAMF-ACC--ALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVP--------IPDLH 195 (345)
Q Consensus 128 ~~~~~yd~~t~~-W~~~~~~~~~r~~~-~~~--~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~--------~~~~~ 195 (345)
.++-++++..+- |.. ..+...+.+- +++ +-++.+++-||.+. .+.+||..+..=+. ..+++
T Consensus 95 tTVK~W~~~~~~~~c~-stir~H~DYVkcla~~ak~~~lvaSgGLD~------~IflWDin~~~~~l~~s~n~~t~~sl~ 167 (735)
T KOG0308|consen 95 TTVKVWNAHKDNTFCM-STIRTHKDYVKCLAYIAKNNELVASGGLDR------KIFLWDINTGTATLVASFNNVTVNSLG 167 (735)
T ss_pred ceEEEeecccCcchhH-hhhhcccchheeeeecccCceeEEecCCCc------cEEEEEccCcchhhhhhccccccccCC
Confidence 456777776653 321 1122222222 222 33788899999874 37888877552211 12233
Q ss_pred -ccCCCceeEEEE--CCEEEEEecCcceEEEEECCCCC
Q 019186 196 -RTHNSACTGVVI--GGKVHVLHKGLSTVQVLDHMGLG 230 (345)
Q Consensus 196 -~~~~~~~~~~~~--~~~iyv~gG~~~~i~~yd~~~~~ 230 (345)
.+ ....-+... .+.+++.||....+..||+++.+
T Consensus 168 sG~-k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~ 204 (735)
T KOG0308|consen 168 SGP-KDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCK 204 (735)
T ss_pred CCC-ccceeeeecCCcceEEEecCcccceEEecccccc
Confidence 22 222222233 34588888888899999998774
No 244
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=35.43 E-value=4.5e+02 Score=25.97 Aligned_cols=90 Identities=8% Similarity=-0.056 Sum_probs=47.4
Q ss_pred ceEEEEeCCCCce-EeCCCCCccCCCceeEEEECCEEEEEecCcceEEEEECCCCC----eeeccCCCCCCceEEEcC--
Q 019186 176 SQAEMYDPEKDVW-VPIPDLHRTHNSACTGVVIGGKVHVLHKGLSTVQVLDHMGLG----WTVEDYGWLQGPMAIVHD-- 248 (345)
Q Consensus 176 ~~v~~yd~~~~~W-~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~i~~yd~~~~~----W~~~~~~~~~~~~~~~~~-- 248 (345)
..+.++|..+++= .++..-++. ...+.-.-||++....-.-..+.+||++..- -.+-........++-.++
T Consensus 150 g~v~i~D~stqk~~~el~~h~d~--vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~ 227 (1012)
T KOG1445|consen 150 GSVYITDISTQKTAVELSGHTDK--VQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWE 227 (1012)
T ss_pred ceEEEEEcccCceeecccCCchh--hhccccccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchh
Confidence 4589999888752 222222222 1223334567766655445668889986541 111111212333444444
Q ss_pred eEEEEeC-----cEEEEecCCceE
Q 019186 249 SVYLMSH-----GLIIKQHRDVRK 267 (345)
Q Consensus 249 ~l~~~~~-----~~i~~~d~~~W~ 267 (345)
+|...|. .++..||...|.
T Consensus 228 rlisTGF~~~R~reV~~~Dtr~f~ 251 (1012)
T KOG1445|consen 228 RLISTGFTTKRIREVRAYDTRKFG 251 (1012)
T ss_pred hhhhcccchhhheeeeeeeccccC
Confidence 4444444 678888877754
No 245
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=35.38 E-value=1.6e+02 Score=20.68 Aligned_cols=20 Identities=15% Similarity=-0.221 Sum_probs=14.4
Q ss_pred CcceEEEEECCCCCeeeccC
Q 019186 217 GLSTVQVLDHMGLGWTVEDY 236 (345)
Q Consensus 217 ~~~~i~~yd~~~~~W~~~~~ 236 (345)
....+..||+++++.+.+-.
T Consensus 35 ~~GRll~ydp~t~~~~vl~~ 54 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLD 54 (89)
T ss_dssp --EEEEEEETTTTEEEEEEE
T ss_pred CCcCEEEEECCCCeEEEehh
Confidence 56678899999998877643
No 246
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=35.12 E-value=3e+02 Score=23.90 Aligned_cols=21 Identities=24% Similarity=0.210 Sum_probs=15.1
Q ss_pred ceeEEEEECCeEEEEcceecC
Q 019186 279 IGFAMIGMGDDIYVIGGVIGP 299 (345)
Q Consensus 279 ~~~~~~~~~~~l~i~GG~~~~ 299 (345)
.+...+.-+|+.|..||.++.
T Consensus 290 INsvAfhPdGksYsSGGEDG~ 310 (327)
T KOG0643|consen 290 INSVAFHPDGKSYSSGGEDGY 310 (327)
T ss_pred cceeEECCCCcccccCCCCce
Confidence 334445568999999997764
No 247
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=35.03 E-value=5.5e+02 Score=26.86 Aligned_cols=117 Identities=14% Similarity=0.112 Sum_probs=72.5
Q ss_pred ceEEEeCCCCCcccCCCCCCCceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCc-eEeCCCCCccCCCceeEEEE
Q 019186 129 EVWSYDPVTRQWSPRASMLVPRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDV-WVPIPDLHRTHNSACTGVVI 207 (345)
Q Consensus 129 ~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~-W~~~~~~~~~~~~~~~~~~~ 207 (345)
-++.|+- .++-+.+..+...-+-.+++.+|+++.+.-| ..+-.|+-.+++ -+.-.....+ ......-+.
T Consensus 810 ivfe~~e-~~~L~~v~e~~v~Gav~aL~~fngkllA~In--------~~vrLye~t~~~eLr~e~~~~~~-~~aL~l~v~ 879 (1096)
T KOG1897|consen 810 IVFEFEE-LNSLELVAETVVKGAVYALVEFNGKLLAGIN--------QSVRLYEWTTERELRIECNISNP-IIALDLQVK 879 (1096)
T ss_pred EEEEEec-CCceeeeeeeeeccceeehhhhCCeEEEecC--------cEEEEEEccccceehhhhcccCC-eEEEEEEec
Confidence 3455555 4666677777777677788888999877644 247888866662 1111111112 222233456
Q ss_pred CCEEEEEec-CcceEEEEECCCCCeeeccCCCC---CCceEEEcCeEEEEeC
Q 019186 208 GGKVHVLHK-GLSTVQVLDHMGLGWTVEDYGWL---QGPMAIVHDSVYLMSH 255 (345)
Q Consensus 208 ~~~iyv~gG-~~~~i~~yd~~~~~W~~~~~~~~---~~~~~~~~~~l~~~~~ 255 (345)
++.|++-.- ..-++..|+...+.+.+++.... ..++..+++..|....
T Consensus 880 gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylgae 931 (1096)
T KOG1897|consen 880 GDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGAE 931 (1096)
T ss_pred CcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEeec
Confidence 788877543 45567789888888988876554 3455667777777665
No 248
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=33.51 E-value=2.7e+02 Score=22.76 Aligned_cols=84 Identities=7% Similarity=0.107 Sum_probs=46.6
Q ss_pred cCcCceEEEeCCCCCcccCC--CCC---CCceeeeeeEeCCeEEEEcCc-CCCCCCCceEEEEeCCCCceEeCCCCCccC
Q 019186 125 FATNEVWSYDPVTRQWSPRA--SML---VPRAMFACCALKEKIVVAGGF-TSCRKSISQAEMYDPEKDVWVPIPDLHRTH 198 (345)
Q Consensus 125 ~~~~~~~~yd~~t~~W~~~~--~~~---~~r~~~~~~~~~~~iyv~gG~-~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~ 198 (345)
...-.+|++|..++.|..+. ... .|. ...-+-+..|.++-|. .+.-..-..++.|++.++.-+.+-+....
T Consensus 85 EgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK--~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~~~dk- 161 (200)
T PF15525_consen 85 EGIGKIYIKNLNNNNWWSLQIDQNEEKYSPK--YIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYEWKDK- 161 (200)
T ss_pred ccceeEEEEecCCCceEEEEecCcccccCCc--eeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeeecccc-
Confidence 35678899998888876542 221 222 2222334444444333 22212235699999999998888776554
Q ss_pred CCceeEEEE-CCEE
Q 019186 199 NSACTGVVI-GGKV 211 (345)
Q Consensus 199 ~~~~~~~~~-~~~i 211 (345)
......+.. ++.|
T Consensus 162 kqQVis~e~~gd~L 175 (200)
T PF15525_consen 162 KQQVISAEKNGDNL 175 (200)
T ss_pred ceeEEEEEEeCCEE
Confidence 333333443 4443
No 249
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=33.27 E-value=53 Score=24.61 Aligned_cols=27 Identities=19% Similarity=0.416 Sum_probs=22.2
Q ss_pred cceEEEEECCCCCeeeccCCCCCCceEEEcCeEEEEe
Q 019186 218 LSTVQVLDHMGLGWTVEDYGWLQGPMAIVHDSVYLMS 254 (345)
Q Consensus 218 ~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~~l~~~~ 254 (345)
...++.||..+++|.... ++|.+|++.
T Consensus 28 ~v~vY~f~~~~~~W~K~~----------iEG~LFv~~ 54 (122)
T PF06058_consen 28 HVVVYKFDHETNEWEKTD----------IEGTLFVYK 54 (122)
T ss_dssp EEEEEEEETTTTEEEEEE----------EEEEEEEEE
T ss_pred eEEEEeecCCCCcEeecC----------cEeeEEEEE
Confidence 567889999999999874 788888875
No 250
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=32.32 E-value=3.7e+02 Score=24.04 Aligned_cols=53 Identities=15% Similarity=0.099 Sum_probs=30.2
Q ss_pred EEcCeEEEEeC---cEEEEecCCceEEeccchhhcccceeEEEEECCeEEEEcceec
Q 019186 245 IVHDSVYLMSH---GLIIKQHRDVRKVVASASEFRRRIGFAMIGMGDDIYVIGGVIG 298 (345)
Q Consensus 245 ~~~~~l~~~~~---~~i~~~d~~~W~~~~~~p~~~~r~~~~~~~~~~~l~i~GG~~~ 298 (345)
+.++..|++.. +.|..|+.+. +.+..+........++.+.-+|+.+++.|+..
T Consensus 195 iA~~~k~imsas~dt~i~lw~lkG-q~L~~idtnq~~n~~aavSP~GRFia~~gFTp 250 (420)
T KOG2096|consen 195 IAGNAKYIMSASLDTKICLWDLKG-QLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTP 250 (420)
T ss_pred ecCCceEEEEecCCCcEEEEecCC-ceeeeeccccccccceeeCCCCcEEEEecCCC
Confidence 34555565554 6677777663 33333332233444666667888888888543
No 251
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=30.00 E-value=3.6e+02 Score=23.22 Aligned_cols=118 Identities=10% Similarity=-0.065 Sum_probs=59.5
Q ss_pred cCceEEEeCCCCCcccCCCCCCCceeeeeeEe-CCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeEE
Q 019186 127 TNEVWSYDPVTRQWSPRASMLVPRAMFACCAL-KEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGV 205 (345)
Q Consensus 127 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~ 205 (345)
..++-.+|..|++=.+.-.++.+. .++-+. +|.|..+.- -..|..+|+.+-.-.+--.||.. . ..++.
T Consensus 164 d~tVRLWD~rTgt~v~sL~~~s~V--tSlEvs~dG~ilTia~-------gssV~Fwdaksf~~lKs~k~P~n-V-~SASL 232 (334)
T KOG0278|consen 164 DKTVRLWDHRTGTEVQSLEFNSPV--TSLEVSQDGRILTIAY-------GSSVKFWDAKSFGLLKSYKMPCN-V-ESASL 232 (334)
T ss_pred CCceEEEEeccCcEEEEEecCCCC--cceeeccCCCEEEEec-------CceeEEeccccccceeeccCccc-c-ccccc
Confidence 346777888887643322223222 222222 555555521 12255566554332222334443 2 12222
Q ss_pred EECCEEEEEecCcceEEEEECCCCCeeecc-CCCC---CCceEEEcCeEEEEeC
Q 019186 206 VIGGKVHVLHKGLSTVQVLDHMGLGWTVED-YGWL---QGPMAIVHDSVYLMSH 255 (345)
Q Consensus 206 ~~~~~iyv~gG~~~~i~~yd~~~~~W~~~~-~~~~---~~~~~~~~~~l~~~~~ 255 (345)
.-+..+||.||...-++.||..++.=...- ..-. .+.--..+|.+|..|.
T Consensus 233 ~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGS 286 (334)
T KOG0278|consen 233 HPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGS 286 (334)
T ss_pred cCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccC
Confidence 335579999997778889998776432221 1111 1111224888888876
No 252
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=29.47 E-value=37 Score=31.31 Aligned_cols=35 Identities=11% Similarity=0.167 Sum_probs=32.2
Q ss_pred CChHHHHHHhhccCCCcchhhHHHhhHHHHHhhcC
Q 019186 7 GLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRS 41 (345)
Q Consensus 7 ~lp~~~~~~~l~~~p~~~~~~~~~~~~~w~~~~~~ 41 (345)
.||+|+++.+++.+-..++.+...+|+.|..+..+
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD 108 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALD 108 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhc
Confidence 79999999999999999999999999999887554
No 253
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=28.81 E-value=97 Score=16.26 Aligned_cols=21 Identities=29% Similarity=0.094 Sum_probs=9.4
Q ss_pred CCEEEEEecCcceEEEEECCCC
Q 019186 208 GGKVHVLHKGLSTVQVLDHMGL 229 (345)
Q Consensus 208 ~~~iyv~gG~~~~i~~yd~~~~ 229 (345)
++.+|+.. ....++++|.+++
T Consensus 6 ~~~v~~~~-~~g~l~a~d~~~G 26 (33)
T smart00564 6 DGTVYVGS-TDGTLYALDAKTG 26 (33)
T ss_pred CCEEEEEc-CCCEEEEEEcccC
Confidence 33444333 3445555555443
No 254
>COG2152 Predicted glycosylase [Carbohydrate transport and metabolism]
Probab=28.68 E-value=4.2e+02 Score=23.50 Aligned_cols=32 Identities=9% Similarity=0.161 Sum_probs=21.0
Q ss_pred eEEeccchhhcccceeEEEEECCeEEEEcceecC
Q 019186 266 RKVVASASEFRRRIGFAMIGMGDDIYVIGGVIGP 299 (345)
Q Consensus 266 W~~~~~~p~~~~r~~~~~~~~~~~l~i~GG~~~~ 299 (345)
|++....| .--+.++++..+|+|++..|...+
T Consensus 262 yE~~Gdv~--~VVF~CG~v~~~~~l~iyYGaADt 293 (314)
T COG2152 262 YERYGDVP--NVVFPCGAVLLGDELLIYYGAADT 293 (314)
T ss_pred hhhcCCcC--cEEeecceEEECCEEEEEeecccc
Confidence 44444444 233557888889999999886543
No 255
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=27.86 E-value=6.1e+02 Score=25.12 Aligned_cols=44 Identities=16% Similarity=0.298 Sum_probs=30.4
Q ss_pred CCCeEEEEeCCCCCEEeCCCCCccccccceeEEEEE-CCEEEEEcCC
Q 019186 65 PENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVST-AGKLFVLGGG 110 (345)
Q Consensus 65 ~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~lyv~GG~ 110 (345)
....++.||+.. .|-....++.+ ..+.--+++.. +++||-.|+.
T Consensus 45 t~g~IEiwN~~~-~w~~~~vi~g~-~drsIE~L~W~e~~RLFS~g~s 89 (691)
T KOG2048|consen 45 TDGNIEIWNLSN-NWFLEPVIHGP-EDRSIESLAWAEGGRLFSSGLS 89 (691)
T ss_pred cCCcEEEEccCC-CceeeEEEecC-CCCceeeEEEccCCeEEeecCC
Confidence 356889999986 68666555543 23555566666 7889999864
No 256
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=27.63 E-value=4.2e+02 Score=23.19 Aligned_cols=92 Identities=9% Similarity=0.074 Sum_probs=51.7
Q ss_pred CceEEEeCCCCCcccCCCCCCCc-e-eeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeEE
Q 019186 128 NEVWSYDPVTRQWSPRASMLVPR-A-MFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGV 205 (345)
Q Consensus 128 ~~~~~yd~~t~~W~~~~~~~~~r-~-~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~ 205 (345)
.++-++|..+-+-. ...+..- + ....+..+|.+-..||.++ ++..+|....+= +..+... ..-.+.+
T Consensus 172 ktvKvWnl~~~~l~--~~~~gh~~~v~t~~vSpDGslcasGgkdg------~~~LwdL~~~k~--lysl~a~-~~v~sl~ 240 (315)
T KOG0279|consen 172 KTVKVWNLRNCQLR--TTFIGHSGYVNTVTVSPDGSLCASGGKDG------EAMLWDLNEGKN--LYSLEAF-DIVNSLC 240 (315)
T ss_pred ceEEEEccCCcchh--hccccccccEEEEEECCCCCEEecCCCCc------eEEEEEccCCce--eEeccCC-CeEeeEE
Confidence 46778888765422 2222222 2 2233344899988888764 367777665442 2333333 3334555
Q ss_pred EECCEEEEEecCcceEEEEECCCCC
Q 019186 206 VIGGKVHVLHKGLSTVQVLDHMGLG 230 (345)
Q Consensus 206 ~~~~~iyv~gG~~~~i~~yd~~~~~ 230 (345)
..-++..++-+...+|-++|+.+..
T Consensus 241 fspnrywL~~at~~sIkIwdl~~~~ 265 (315)
T KOG0279|consen 241 FSPNRYWLCAATATSIKIWDLESKA 265 (315)
T ss_pred ecCCceeEeeccCCceEEEeccchh
Confidence 5566666666555667788876653
No 257
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=27.14 E-value=2e+02 Score=25.63 Aligned_cols=34 Identities=15% Similarity=0.084 Sum_probs=23.4
Q ss_pred EECCEEEEEecCcceEEEEECCCCCeeeccCCCC
Q 019186 206 VIGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWL 239 (345)
Q Consensus 206 ~~~~~iyv~gG~~~~i~~yd~~~~~W~~~~~~~~ 239 (345)
.++++||+.--....+..+|+++++.+.+...+.
T Consensus 210 WhdgrLwvldsgtGev~~vD~~~G~~e~Va~vpG 243 (335)
T TIGR03032 210 WYQGKLWLLNSGRGELGYVDPQAGKFQPVAFLPG 243 (335)
T ss_pred EeCCeEEEEECCCCEEEEEcCCCCcEEEEEECCC
Confidence 4567777776556677777777777777654444
No 258
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=26.62 E-value=1.8e+02 Score=27.52 Aligned_cols=95 Identities=9% Similarity=0.076 Sum_probs=52.6
Q ss_pred CcEEEEEecCCCCeEEEEeCCCCCEEeCCCCCccccccceeEEEEE-CCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEE
Q 019186 55 ENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVST-AGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSY 133 (345)
Q Consensus 55 ~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~y 133 (345)
++.-.+.||. ...+.++|..+-+=+....++.. .-.++++++. +.++....-. .-.+.+|
T Consensus 476 dgrtLivGGe-astlsiWDLAapTprikaeltss--apaCyALa~spDakvcFsccs----------------dGnI~vw 536 (705)
T KOG0639|consen 476 DGRTLIVGGE-ASTLSIWDLAAPTPRIKAELTSS--APACYALAISPDAKVCFSCCS----------------DGNIAVW 536 (705)
T ss_pred CCceEEeccc-cceeeeeeccCCCcchhhhcCCc--chhhhhhhcCCccceeeeecc----------------CCcEEEE
Confidence 4455555665 56777888887766555555553 2345555554 4454433322 2347889
Q ss_pred eCCCCCcccCCCCCCCceeeeeeEe--CCeEEEEcCcCC
Q 019186 134 DPVTRQWSPRASMLVPRAMFACCAL--KEKIVVAGGFTS 170 (345)
Q Consensus 134 d~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~gG~~~ 170 (345)
|+..++ .+..++..-.+..+..+ +|.-..-||.++
T Consensus 537 DLhnq~--~VrqfqGhtDGascIdis~dGtklWTGGlDn 573 (705)
T KOG0639|consen 537 DLHNQT--LVRQFQGHTDGASCIDISKDGTKLWTGGLDN 573 (705)
T ss_pred Ecccce--eeecccCCCCCceeEEecCCCceeecCCCcc
Confidence 997665 23333433334444443 465566788764
No 259
>PF11134 Phage_stabilise: Phage stabilisation protein; InterPro: IPR021098 This entry represents the Bacteriophage P22, Gp10, DNA-stabilising protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are phage proteins involved with stabilising the head assembly unit and condensed DNA within the capsid [].
Probab=26.43 E-value=5.5e+02 Score=24.12 Aligned_cols=54 Identities=7% Similarity=-0.036 Sum_probs=28.9
Q ss_pred CCcEEEEEecCCCCeEEEEeCCCCC------EEeCCCCCccccccceeEEEEECCEEEEEcCC
Q 019186 54 SENLLCVCAFDPENLWQLYDPLRDL------WITLPVLPSKIRHLAHFGVVSTAGKLFVLGGG 110 (345)
Q Consensus 54 ~~~~l~v~gg~~~~~~~~yd~~~~~------W~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~ 110 (345)
..+.|++||. ++++.|..+-.. ....+..--+...-..++.+-+++.++.+|..
T Consensus 191 ~r~~I~~fG~---~TiEvf~nTGasd~~~~~y~r~pg~~Iq~GcAa~~s~~~~~~t~~wlg~~ 250 (469)
T PF11134_consen 191 WRREIWCFGA---STIEVFYNTGASDFTQPPYQRQPGAMIQKGCAAKHSKTKFGNTVAWLGHD 250 (469)
T ss_pred eeeeEEEEec---ccEEEEEccCCcccccchhhhCCcceeeccccccceeeecCCEEEEeccC
Confidence 3677888883 555555443221 11111111111234556777788888888864
No 260
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=25.78 E-value=5.4e+02 Score=23.89 Aligned_cols=128 Identities=13% Similarity=0.082 Sum_probs=64.9
Q ss_pred eeEEEE-ECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeCCCCCcccCCCCCCCceeeeeeEe-CCeEEEEcCcCCC
Q 019186 94 HFGVVS-TAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDPVTRQWSPRASMLVPRAMFACCAL-KEKIVVAGGFTSC 171 (345)
Q Consensus 94 ~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~gG~~~~ 171 (345)
-++++. .+|.+..-||.+. .--++|..|+.-.-.-. ...+.-+++... ||...+-||.++
T Consensus 306 v~~iaf~~DGSL~~tGGlD~----------------~~RvWDlRtgr~im~L~-gH~k~I~~V~fsPNGy~lATgs~Dn- 367 (459)
T KOG0272|consen 306 VFSIAFQPDGSLAATGGLDS----------------LGRVWDLRTGRCIMFLA-GHIKEILSVAFSPNGYHLATGSSDN- 367 (459)
T ss_pred cceeEecCCCceeeccCccc----------------hhheeecccCcEEEEec-ccccceeeEeECCCceEEeecCCCC-
Confidence 344444 3788999998743 22356776664221100 012222333333 677777776553
Q ss_pred CCCCceEEEEeCCCCceEeCCCCCccCCCceeEEEE---CCEEEEEecCcceEEEEECCCCCeeeccCCCCCCceEEEcC
Q 019186 172 RKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVVI---GGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWLQGPMAIVHD 248 (345)
Q Consensus 172 ~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~---~~~iyv~gG~~~~i~~yd~~~~~W~~~~~~~~~~~~~~~~~ 248 (345)
.+-++|+...+= +..+|.. ..-.+-+.+ .|+..+.++.-+++-.+ .+..|+.+. +++..++
T Consensus 368 -----t~kVWDLR~r~~--ly~ipAH-~nlVS~Vk~~p~~g~fL~TasyD~t~kiW--s~~~~~~~k------sLaGHe~ 431 (459)
T KOG0272|consen 368 -----TCKVWDLRMRSE--LYTIPAH-SNLVSQVKYSPQEGYFLVTASYDNTVKIW--STRTWSPLK------SLAGHEG 431 (459)
T ss_pred -----cEEEeeeccccc--ceecccc-cchhhheEecccCCeEEEEcccCcceeee--cCCCcccch------hhcCCcc
Confidence 366677655432 3334433 211111222 45555655544444444 245666663 5566777
Q ss_pred eEEEEeC
Q 019186 249 SVYLMSH 255 (345)
Q Consensus 249 ~l~~~~~ 255 (345)
+++.++.
T Consensus 432 kV~s~Di 438 (459)
T KOG0272|consen 432 KVISLDI 438 (459)
T ss_pred ceEEEEe
Confidence 7777663
No 261
>PF06079 Apyrase: Apyrase; InterPro: IPR009283 This family consists of several eukaryotic apyrase (or adenosine diphosphatase) proteins (3.6.1.5 from EC), and related nucleoside diphosphatases (3.6.1.6 from EC). The salivary apyrases of blood-feeding arthropods are nucleotide hydrolysing enzymes implicated in the inhibition of host platelet aggregation through the hydrolysis of extracellular adenosine diphosphate [].; GO: 0005509 calcium ion binding, 0016462 pyrophosphatase activity; PDB: 2H2N_A 1S18_A 2H2U_A 1S1D_B.
Probab=25.66 E-value=4.1e+02 Score=23.34 Aligned_cols=53 Identities=11% Similarity=0.175 Sum_probs=26.8
Q ss_pred CceEEEcCeEEEEeC--cEEEEecCCc---eEEeccchhhcc--cceeEEEEECCeEEEE
Q 019186 241 GPMAIVHDSVYLMSH--GLIIKQHRDV---RKVVASASEFRR--RIGFAMIGMGDDIYVI 293 (345)
Q Consensus 241 ~~~~~~~~~l~~~~~--~~i~~~d~~~---W~~~~~~p~~~~--r~~~~~~~~~~~l~i~ 293 (345)
+-+.+.+|+||.++. +.|+..+.+. |..+.+-+.... ...=-+++-+++|||-
T Consensus 57 SELv~FngkLys~DDrTGiVyeI~~~~~vPwviL~dGdG~~~kGfK~EWaTVKd~~LyvG 116 (291)
T PF06079_consen 57 SELVVFNGKLYSFDDRTGIVYEIKGDKAVPWVILSDGDGNTSKGFKAEWATVKDDKLYVG 116 (291)
T ss_dssp EEEEEETTEEEEEETTT-EEEEEETTEEEEEEE-BSTTTTESSB----EEEEETTEEEEE
T ss_pred eeeeeECCEEeeeeCCCceEEEEeCCceeceEEEeCCCCCccccccceeeEEeCCeeeec
Confidence 344566777777776 5666665555 766655442111 1111134457777764
No 262
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=25.22 E-value=2.5e+02 Score=26.43 Aligned_cols=62 Identities=11% Similarity=0.086 Sum_probs=36.8
Q ss_pred CCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeEE--EEC-CEEEEEecCcceEEEEECCCCC
Q 019186 159 KEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGV--VIG-GKVHVLHKGLSTVQVLDHMGLG 230 (345)
Q Consensus 159 ~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~--~~~-~~iyv~gG~~~~i~~yd~~~~~ 230 (345)
.+.-++..|++. .+-.+|.+|++-..- +... . -..++ .-+ ..++++||....|..+|.++++
T Consensus 269 ~g~~fLS~sfD~------~lKlwDtETG~~~~~--f~~~-~-~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k 333 (503)
T KOG0282|consen 269 CGTSFLSASFDR------FLKLWDTETGQVLSR--FHLD-K-VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK 333 (503)
T ss_pred cCCeeeeeecce------eeeeeccccceEEEE--EecC-C-CceeeecCCCCCcEEEEecCCCcEEEEeccchH
Confidence 345566666653 377888888864321 1111 1 11111 123 4899999977888888888764
No 263
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.00 E-value=5.1e+02 Score=22.92 Aligned_cols=83 Identities=10% Similarity=0.127 Sum_probs=48.3
Q ss_pred ceEEEeCCCCCcccCCCCCCCceeeeee--EeCCe-EEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeEE
Q 019186 129 EVWSYDPVTRQWSPRASMLVPRAMFACC--ALKEK-IVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGV 205 (345)
Q Consensus 129 ~~~~yd~~t~~W~~~~~~~~~r~~~~~~--~~~~~-iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~ 205 (345)
...+||+++.+=-.+-.....|+.++.. .-++. +|.--+ +.......+-+||.. +..+++...+..+...|.+.
T Consensus 92 f~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEn--dfd~~rGViGvYd~r-~~fqrvgE~~t~GiGpHev~ 168 (366)
T COG3490 92 FAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATEN--DFDPNRGVIGVYDAR-EGFQRVGEFSTHGIGPHEVT 168 (366)
T ss_pred eEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecC--CCCCCCceEEEEecc-cccceecccccCCcCcceeE
Confidence 4667888877533332334556554444 44554 455432 122334578899987 77888888776645555555
Q ss_pred EE-CCEEEEE
Q 019186 206 VI-GGKVHVL 214 (345)
Q Consensus 206 ~~-~~~iyv~ 214 (345)
.+ ||+..++
T Consensus 169 lm~DGrtlvv 178 (366)
T COG3490 169 LMADGRTLVV 178 (366)
T ss_pred EecCCcEEEE
Confidence 44 5565544
No 264
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=23.32 E-value=7.6e+02 Score=24.71 Aligned_cols=40 Identities=13% Similarity=0.176 Sum_probs=24.8
Q ss_pred CceEEEeCCCCCcccCCCCCCCce-eeeee-EeCCeEEEEcCcC
Q 019186 128 NEVWSYDPVTRQWSPRASMLVPRA-MFACC-ALKEKIVVAGGFT 169 (345)
Q Consensus 128 ~~~~~yd~~t~~W~~~~~~~~~r~-~~~~~-~~~~~iyv~gG~~ 169 (345)
+.+++||++.++ .+.++..... -.+++ ..+|+.|..||.+
T Consensus 33 ~rlliyD~ndG~--llqtLKgHKDtVycVAys~dGkrFASG~aD 74 (1081)
T KOG1538|consen 33 SRLLVYDTSDGT--LLQPLKGHKDTVYCVAYAKDGKRFASGSAD 74 (1081)
T ss_pred CEEEEEeCCCcc--cccccccccceEEEEEEccCCceeccCCCc
Confidence 369999998775 3334433322 22333 3488999988865
No 265
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.38 E-value=8.2e+02 Score=26.55 Aligned_cols=87 Identities=18% Similarity=0.217 Sum_probs=50.6
Q ss_pred CChHHHHHHhhccCCCcchhhHHHhhHHHHHhhcChhhHHHHHhcCCCCcEEEEEecCCCCeEEEEeCCCCCEEeC---C
Q 019186 7 GLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELFKARQEVGSSENLLCVCAFDPENLWQLYDPLRDLWITL---P 83 (345)
Q Consensus 7 ~lp~~~~~~~l~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~l~v~gg~~~~~~~~yd~~~~~W~~~---~ 83 (345)
.+|+|++++---+-..+....|+...+.|-+. ++.||+.--...++...||-.+.+--.+ .
T Consensus 66 ~IP~el~eq~~~~~~~~~mGiFpeI~RaWiTi----------------Dn~L~lWny~~~~e~~~~d~~shtIl~V~Lvk 129 (1311)
T KOG1900|consen 66 NIPDELLEQFSNIECKTDMGIFPEIGRAWITI----------------DNNLFLWNYESDNELAEYDGLSHTILKVGLVK 129 (1311)
T ss_pred cCCHHHHHHhcCcceeeeeccchhhcceEEEe----------------CCeEEEEEcCCCCccccccchhhhheeeeeec
Confidence 47888887766555555666666666666554 7888888765566777777666544332 2
Q ss_pred CCCccccccceeE-EEEECCEEEEEcC
Q 019186 84 VLPSKIRHLAHFG-VVSTAGKLFVLGG 109 (345)
Q Consensus 84 ~~~~~~~~~~~~~-~~~~~~~lyv~GG 109 (345)
+.|...-++-.|. +++-.-.|+++|=
T Consensus 130 PkpgvFv~~IqhlLvvaT~~ei~ilgV 156 (1311)
T KOG1900|consen 130 PKPGVFVPEIQHLLVVATPVEIVILGV 156 (1311)
T ss_pred CCCCcchhhhheeEEecccceEEEEEE
Confidence 2332211123333 3334556777763
No 266
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=21.24 E-value=7.4e+02 Score=23.78 Aligned_cols=101 Identities=14% Similarity=0.208 Sum_probs=55.0
Q ss_pred CcEEEEEecCCCCeEEEEeCCCCCEEeCCCCCccccccceeEEEEECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEe
Q 019186 55 ENLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYD 134 (345)
Q Consensus 55 ~~~l~v~gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd 134 (345)
.+.+..+| ...++.+++..+...+...+-..+....-.+++..++.=.|-|.. .-.+.+|+
T Consensus 213 ~nliit~G---k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS----------------~G~i~Iw~ 273 (626)
T KOG2106|consen 213 PNLIITCG---KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDS----------------GGNILIWS 273 (626)
T ss_pred CcEEEEeC---CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecC----------------CceEEEEe
Confidence 44444444 567788899998876655444332221222344444433344432 33578899
Q ss_pred CCCCCcccCCCCCCCceeeeeeEeC-CeEEEEcCcCCCCCCCceEEEEe
Q 019186 135 PVTRQWSPRASMLVPRAMFACCALK-EKIVVAGGFTSCRKSISQAEMYD 182 (345)
Q Consensus 135 ~~t~~W~~~~~~~~~r~~~~~~~~~-~~iyv~gG~~~~~~~~~~v~~yd 182 (345)
+.+++-++... .....-++++.++ |.|.- ||.+ +.+..+|
T Consensus 274 ~~~~~~~k~~~-aH~ggv~~L~~lr~GtllS-GgKD------Rki~~Wd 314 (626)
T KOG2106|consen 274 KGTNRISKQVH-AHDGGVFSLCMLRDGTLLS-GGKD------RKIILWD 314 (626)
T ss_pred CCCceEEeEee-ecCCceEEEEEecCccEee-cCcc------ceEEecc
Confidence 98777655433 3344456777764 45544 7755 3355555
No 267
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=21.15 E-value=8.9e+02 Score=25.85 Aligned_cols=76 Identities=16% Similarity=0.180 Sum_probs=44.1
Q ss_pred eEeCCCCCccCCCceeEEE---ECCEEEEEecCcceEEEEECCCCCee-eccCCCC----CCceEEEcCeEEEEeC--cE
Q 019186 188 WVPIPDLHRTHNSACTGVV---IGGKVHVLHKGLSTVQVLDHMGLGWT-VEDYGWL----QGPMAIVHDSVYLMSH--GL 257 (345)
Q Consensus 188 W~~~~~~~~~~~~~~~~~~---~~~~iyv~gG~~~~i~~yd~~~~~W~-~~~~~~~----~~~~~~~~~~l~~~~~--~~ 257 (345)
|+.+.++....+....++. ..|.+++.|+ ...|-++|....+-. .++.... ..+.-.++|.+++.|. +.
T Consensus 1154 w~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd-~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGs 1232 (1387)
T KOG1517|consen 1154 WSSLSDQLPGARGTGLVVDWQQQSGHLLVTGD-VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGS 1232 (1387)
T ss_pred eccccccCccCCCCCeeeehhhhCCeEEecCC-eeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCc
Confidence 5666554433143332221 2678888774 777888998776542 3322111 2223335678888886 78
Q ss_pred EEEecCC
Q 019186 258 IIKQHRD 264 (345)
Q Consensus 258 i~~~d~~ 264 (345)
+-.||..
T Consensus 1233 vRvyD~R 1239 (1387)
T KOG1517|consen 1233 VRVYDRR 1239 (1387)
T ss_pred eEEeecc
Confidence 8888854
No 268
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=20.65 E-value=6.5e+02 Score=22.95 Aligned_cols=30 Identities=13% Similarity=0.119 Sum_probs=17.9
Q ss_pred CceEEEcCeEEEEeC--cEEEEecCCc---eEEec
Q 019186 241 GPMAIVHDSVYLMSH--GLIIKQHRDV---RKVVA 270 (345)
Q Consensus 241 ~~~~~~~~~l~~~~~--~~i~~~d~~~---W~~~~ 270 (345)
.++++-.+.+++.|+ +.++-+|-++ .+...
T Consensus 364 ntl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~ 398 (460)
T KOG0285|consen 364 NTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQ 398 (460)
T ss_pred eeeeeccCceEEEcCCceEEEEEecCcCccccccc
Confidence 344555666666666 5666666655 55553
No 269
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=20.44 E-value=4.4e+02 Score=23.54 Aligned_cols=100 Identities=18% Similarity=0.309 Sum_probs=55.5
Q ss_pred CCeEEEEeCCCCC-EEeCCCCCccccccceeEEE---EECCEEEEEcCCCCCCCCCCCCCCCCcCcCceEEEeC-CCCCc
Q 019186 66 ENLWQLYDPLRDL-WITLPVLPSKIRHLAHFGVV---STAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWSYDP-VTRQW 140 (345)
Q Consensus 66 ~~~~~~yd~~~~~-W~~~~~~~~~~~~~~~~~~~---~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~yd~-~t~~W 140 (345)
..++.+|.-..+. |+....+... ......+ ...++|.- ++.+ ...+++.. ..++|
T Consensus 31 ~~evhiy~~~~~~~w~~~htls~H---d~~vtgvdWap~snrIvt-cs~d----------------rnayVw~~~~~~~W 90 (361)
T KOG1523|consen 31 NHEVHIYSMLGADLWEPAHTLSEH---DKIVTGVDWAPKSNRIVT-CSHD----------------RNAYVWTQPSGGTW 90 (361)
T ss_pred CceEEEEEecCCCCceeceehhhh---CcceeEEeecCCCCceeE-ccCC----------------CCccccccCCCCee
Confidence 4588899988888 9988777653 2222221 12334433 3321 23456665 77889
Q ss_pred ccCCCCC-CCceeeeee-EeCCeEEEEcCcCCCCCCCceEEEEeCCCCceE
Q 019186 141 SPRASML-VPRAMFACC-ALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWV 189 (345)
Q Consensus 141 ~~~~~~~-~~r~~~~~~-~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~ 189 (345)
.+...+. ..|+.-++- .-++..|++|+-. ..-+|..|.-+++=|.
T Consensus 91 kptlvLlRiNrAAt~V~WsP~enkFAVgSga----r~isVcy~E~ENdWWV 137 (361)
T KOG1523|consen 91 KPTLVLLRINRAATCVKWSPKENKFAVGSGA----RLISVCYYEQENDWWV 137 (361)
T ss_pred ccceeEEEeccceeeEeecCcCceEEeccCc----cEEEEEEEecccceeh
Confidence 9877654 334322222 1266666776532 2456777776666553
No 270
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=20.43 E-value=2.8e+02 Score=20.31 Aligned_cols=20 Identities=30% Similarity=0.735 Sum_probs=16.0
Q ss_pred CcCceEEEeCCCC-CcccCCC
Q 019186 126 ATNEVWSYDPVTR-QWSPRAS 145 (345)
Q Consensus 126 ~~~~~~~yd~~t~-~W~~~~~ 145 (345)
....+..||+.++ .|.....
T Consensus 9 arA~V~~yd~~tKk~WvPs~~ 29 (111)
T cd01206 9 TRAHVFQIDPKTKKNWIPASK 29 (111)
T ss_pred eeeEEEEECCCCcceeEeCCC
Confidence 4568999999886 8988764
No 271
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=20.37 E-value=7.8e+02 Score=23.72 Aligned_cols=25 Identities=8% Similarity=-0.125 Sum_probs=16.2
Q ss_pred CceEEEcCeEEEEeC--cEEEEecCCc
Q 019186 241 GPMAIVHDSVYLMSH--GLIIKQHRDV 265 (345)
Q Consensus 241 ~~~~~~~~~l~~~~~--~~i~~~d~~~ 265 (345)
+.+...++..+++|| +.+..|..+.
T Consensus 448 ~vAv~~~~~~vaVGG~Dgkvhvysl~g 474 (603)
T KOG0318|consen 448 AVAVSPDGSEVAVGGQDGKVHVYSLSG 474 (603)
T ss_pred eEEEcCCCCEEEEecccceEEEEEecC
Confidence 344446778888888 5666666543
No 272
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=20.36 E-value=8e+02 Score=24.04 Aligned_cols=132 Identities=9% Similarity=-0.079 Sum_probs=70.2
Q ss_pred CceEEEeCCCCCcccCCCCCC-CceeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeCCCCceEeCCCCCccCCCceeEEE
Q 019186 128 NEVWSYDPVTRQWSPRASMLV-PRAMFACCALKEKIVVAGGFTSCRKSISQAEMYDPEKDVWVPIPDLHRTHNSACTGVV 206 (345)
Q Consensus 128 ~~~~~yd~~t~~W~~~~~~~~-~r~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~ 206 (345)
..+++||..+.+--+.++.+. .+-.+-+..+++.+.|-- . .-++.++++..+|....++...........-
T Consensus 184 dGL~~fd~~~gkalql~s~~~dk~I~al~~d~qg~LWVGT--d------qGv~~~e~~G~~~sn~~~~lp~~~I~ll~qD 255 (671)
T COG3292 184 DGLSYFDAGRGKALQLASPPLDKAINALIADVQGRLWVGT--D------QGVYLQEAEGWRASNWGPMLPSGNILLLVQD 255 (671)
T ss_pred CcceEEccccceEEEcCCCcchhhHHHHHHHhcCcEEEEe--c------cceEEEchhhccccccCCCCcchheeeeecc
Confidence 468889998888777777665 455556666678876642 1 2289999999777766554332132211111
Q ss_pred ECCEEEEEecCcceEEEEECCCCCeeeccCCCC--C----CceEEEcCeEEEEeCcEEEEecCCceEEe
Q 019186 207 IGGKVHVLHKGLSTVQVLDHMGLGWTVEDYGWL--Q----GPMAIVHDSVYLMSHGLIIKQHRDVRKVV 269 (345)
Q Consensus 207 ~~~~iyv~gG~~~~i~~yd~~~~~W~~~~~~~~--~----~~~~~~~~~l~~~~~~~i~~~d~~~W~~~ 269 (345)
-.|.+++-. .+.+.++......-+....... . +-.--.+|.+++-....++.|....|..+
T Consensus 256 ~qG~lWiGT--enGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLWv~t~~giv~~~~a~w~~m 322 (671)
T COG3292 256 AQGELWIGT--ENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGSLWVGTYGGIVRYLTADWKRM 322 (671)
T ss_pred cCCCEEEee--cccceeEecCCCCccccccccCCccccccceeeccCCCEeeeccCceEEEecchhhhe
Confidence 134444322 3334444443333222111111 0 01111355666666567777777777664
No 273
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=20.30 E-value=6.4e+02 Score=22.69 Aligned_cols=69 Identities=10% Similarity=0.054 Sum_probs=33.8
Q ss_pred eeeeeeEeCCeEEEEcCcCCCCCCCceEEEEeC-CCCceEeCCC-CCc-----cC-CCceeEEEECCEEEEEecCcceEE
Q 019186 151 AMFACCALKEKIVVAGGFTSCRKSISQAEMYDP-EKDVWVPIPD-LHR-----TH-NSACTGVVIGGKVHVLHKGLSTVQ 222 (345)
Q Consensus 151 ~~~~~~~~~~~iyv~gG~~~~~~~~~~v~~yd~-~~~~W~~~~~-~~~-----~~-~~~~~~~~~~~~iyv~gG~~~~i~ 222 (345)
+.|+++...+--+++.|+. +.+.+||. ...+-..+-+ ... .. ....+.-.++.+.+.+|+....+-
T Consensus 160 aAhsL~Fs~DGeqlfaGyk------rcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~g 233 (406)
T KOG2919|consen 160 AAHSLQFSPDGEQLFAGYK------RCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVG 233 (406)
T ss_pred hheeEEecCCCCeEeeccc------ceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceee
Confidence 3455666555566666654 45888887 3443322211 111 10 111111133566777877555555
Q ss_pred EEE
Q 019186 223 VLD 225 (345)
Q Consensus 223 ~yd 225 (345)
.|.
T Consensus 234 iy~ 236 (406)
T KOG2919|consen 234 IYN 236 (406)
T ss_pred eEe
Confidence 554
Done!