BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019187
(345 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XJ5|A Chain A, X-Ray Structure Of Spermidine Synthase From Arabidopsis
Thaliana Gene At1g23820
pdb|1XJ5|B Chain B, X-Ray Structure Of Spermidine Synthase From Arabidopsis
Thaliana Gene At1g23820
pdb|1XJ5|C Chain C, X-Ray Structure Of Spermidine Synthase From Arabidopsis
Thaliana Gene At1g23820
pdb|1XJ5|D Chain D, X-Ray Structure Of Spermidine Synthase From Arabidopsis
Thaliana Gene At1g23820
pdb|2Q41|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Spermidine Synthase From Arabidopsis Thaliana Gene
At1g23820
pdb|2Q41|D Chain D, Ensemble Refinement Of The Protein Crystal Structure Of
Spermidine Synthase From Arabidopsis Thaliana Gene
At1g23820
pdb|2Q41|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Spermidine Synthase From Arabidopsis Thaliana Gene
At1g23820
pdb|2Q41|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of
Spermidine Synthase From Arabidopsis Thaliana Gene
At1g23820
Length = 334
Score = 527 bits (1357), Expect = e-150, Method: Compositional matrix adjust.
Identities = 257/337 (76%), Positives = 288/337 (85%), Gaps = 14/337 (4%)
Query: 8 AATDLPLKRPRDDGEKEANNNNNGSVLMEM---DSNKQPDCISSVIPGWFSEISPMWPGE 64
+ATDL KRPR++ ++N G+ E D K+P C S+VIPGWFSE SP WPGE
Sbjct: 7 SATDL--KRPREE------DDNGGAATXETENGDQKKEPACFSTVIPGWFSEXSPXWPGE 58
Query: 65 AHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSI 124
AHSLKVEK+LFQGKSDYQ+V+VFQS+TYGKVL+LDGVIQLTERDECAYQE ITHLPLCSI
Sbjct: 59 AHSLKVEKVLFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEXITHLPLCSI 118
Query: 125 PNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTL 184
PNPKKVLVI VLREV+RH+S+E+ID CEIDK VVDVSKQFFPDVA+G+EDPRV L
Sbjct: 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDXCEIDKXVVDVSKQFFPDVAIGYEDPRVNL 178
Query: 185 HIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESI 244
IGDGVAFLK EG+YDAVIVDSSDPIGPA+ELFEKPFF+SVA+ALRPGGVV TQAES+
Sbjct: 179 VIGDGVAFLKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESL 238
Query: 245 WLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPPVDFKHPVNPIDA 304
WLH IIEDIV+NCR+IFKGSVNYAWT+VPTYPSGVIGF LCSTEGP VDFKHP+NPID
Sbjct: 239 WLHXDIIEDIVSNCREIFKGSVNYAWTSVPTYPSGVIGFXLCSTEGPDVDFKHPLNPIDE 298
Query: 305 DDSNCNSSKGPLKFYNSEIHTAAFCLPTFAKKVIESK 341
S N GPLKFYN+EIH+AAFCLP+FAKKVIESK
Sbjct: 299 SSSKSN---GPLKFYNAEIHSAAFCLPSFAKKVIESK 332
>pdb|2O05|A Chain A, Human Spermidine Synthase
pdb|2O05|B Chain B, Human Spermidine Synthase
pdb|2O06|A Chain A, Human Spermidine Synthase
pdb|2O06|B Chain B, Human Spermidine Synthase
pdb|2O07|A Chain A, Human Spermidine Synthase
pdb|2O07|B Chain B, Human Spermidine Synthase
pdb|2O0L|A Chain A, Human Spermidine Synthase
pdb|2O0L|B Chain B, Human Spermidine Synthase
Length = 304
Score = 298 bits (764), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 141/292 (48%), Positives = 205/292 (70%), Gaps = 7/292 (2%)
Query: 47 SSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTE 106
+++ GWF E +WPG+A SL+VE++L +S YQ+++VF+S TYG VL+LDGVIQ TE
Sbjct: 16 AAIREGWFRETCSLWPGQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTE 75
Query: 107 RDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVS 166
RDE +YQEMI +LPLCS PNP+KVL+I VLREV +H SVE + CEID+ V+ VS
Sbjct: 76 RDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVS 135
Query: 167 KQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFES 226
K+F P +A+G+ ++TLH+GDG F+K + +D +I DSSDP+GPA+ LF++ +++
Sbjct: 136 KKFLPGMAIGYSSSKLTLHVGDGFEFMKQ-NQDAFDVIITDSSDPMGPAESLFKESYYQL 194
Query: 227 VAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLC 286
+ AL+ GV+ Q E WLH+ +I+++ C+ +F V YA+ T+PTYPSG IGFMLC
Sbjct: 195 MKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFP-VVAYAYCTIPTYPSGQIGFMLC 253
Query: 287 STEGPPVDFKHPVNPIDADDSNCNSSKGPLKFYNSEIHTAAFCLPTFAKKVI 338
S + P +F+ PV P+ + ++ LK+YNS++H AAF LP FA+K +
Sbjct: 254 S-KNPSTNFQEPVQPL----TQQQVAQMQLKYYNSDVHRAAFVLPEFARKAL 300
>pdb|3RW9|A Chain A, Crystal Structure Of Human Spermidine Synthase In Complex
With Decarboxylated S-Adenosylhomocysteine
pdb|3RW9|B Chain B, Crystal Structure Of Human Spermidine Synthase In Complex
With Decarboxylated S-Adenosylhomocysteine
Length = 304
Score = 298 bits (763), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 141/292 (48%), Positives = 205/292 (70%), Gaps = 7/292 (2%)
Query: 47 SSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTE 106
+++ GWF E +WPG+A SL+VE++L +S YQ+++VF+S TYG VL+LDGVIQ TE
Sbjct: 16 AAIREGWFRETCSLWPGQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTE 75
Query: 107 RDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVS 166
RDE +YQEMI +LPLCS PNP+KVL+I VLREV +H SVE + CEID+ V+ VS
Sbjct: 76 RDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVS 135
Query: 167 KQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFES 226
K+F P +A+G+ ++TLH+GDG F+K + +D +I DSSDP+GPA+ LF++ +++
Sbjct: 136 KKFLPGMAIGYSSSKLTLHVGDGFEFMKQ-NQDAFDVIITDSSDPMGPAESLFKESYYQL 194
Query: 227 VAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLC 286
+ AL+ GV+ Q E WLH+ +I+++ C+ +F V YA+ T+PTYPSG IGFMLC
Sbjct: 195 MKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFP-VVAYAYCTIPTYPSGQIGFMLC 253
Query: 287 STEGPPVDFKHPVNPIDADDSNCNSSKGPLKFYNSEIHTAAFCLPTFAKKVI 338
S + P +F+ PV P+ + ++ LK+YNS++H AAF LP FA+K +
Sbjct: 254 S-KNPSTNFQEPVQPL----TQQQVAQMQLKYYNSDVHRAAFVLPEFARKAL 300
>pdb|2PSS|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Its Apo- Form
pdb|2PSS|B Chain B, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Its Apo- Form
pdb|2PSS|C Chain C, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Its Apo- Form
pdb|2PT6|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine
pdb|2PT6|B Chain B, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine
pdb|2PT6|C Chain C, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine
pdb|2PT9|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine And
The Inhibitor Cis-4- Methylcyclohexylamine (4mcha)
pdb|2PT9|B Chain B, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine And
The Inhibitor Cis-4- Methylcyclohexylamine (4mcha)
pdb|2PT9|C Chain C, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine And
The Inhibitor Cis-4- Methylcyclohexylamine (4mcha)
Length = 321
Score = 278 bits (711), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 139/288 (48%), Positives = 195/288 (67%), Gaps = 10/288 (3%)
Query: 53 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAY 112
WFSE S MWPG+A SLK++KIL++ KS YQNV+VF+S+TYGKVL+LDGVIQLTE+DE AY
Sbjct: 43 WFSEFSIMWPGQAFSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAY 102
Query: 113 QEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPD 172
EM+TH+P+ PK VLV+ ++RE+ ++ SVE IDICEID+ V++VSK +F +
Sbjct: 103 HEMMTHVPMTVSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKN 162
Query: 173 VAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALR 232
++ G+ED RV + I D FL+ V TYD +IVDSSDPIGPA+ LF + F+E + AL+
Sbjct: 163 ISCGYEDKRVNVFIEDASKFLENVT-NTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALK 221
Query: 233 PGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPP 292
P G Q ES+W+H+ I++++ +++FK V YA ++PTYP G IG + CS
Sbjct: 222 PNGYCVAQCESLWIHVGTIKNMIGYAKKLFK-KVEYANISIPTYPCGCIGILCCSKTDTG 280
Query: 293 VDFKHPVNPIDADDSNCNSSKGPLKFYNSEIHTAAFCLPTFAKKVIES 340
+ P +++ + LK+YN E H+AAF LP F K IE+
Sbjct: 281 LT--KPNKKLESKEF------ADLKYYNYENHSAAFKLPAFLLKEIEN 320
>pdb|2PWP|A Chain A, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermidine
pdb|2PWP|B Chain B, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermidine
pdb|2PWP|C Chain C, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermidine
Length = 282
Score = 278 bits (710), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 139/288 (48%), Positives = 194/288 (67%), Gaps = 10/288 (3%)
Query: 53 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAY 112
WFSE S MWPG+A SLK++KIL++ KS YQNV+VF+S+TYGKVL+LDGVIQLTE+DE AY
Sbjct: 4 WFSEFSIMWPGQAFSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAY 63
Query: 113 QEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPD 172
EM+TH+P+ PK VLV+ ++RE+ ++ SVE IDICEID+ V++VSK +F +
Sbjct: 64 HEMMTHVPMTVSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKN 123
Query: 173 VAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALR 232
++ G+ED RV + I D FL+ V TYD +IVDSSDPIGPA+ LF + F+E + AL+
Sbjct: 124 ISCGYEDKRVNVFIEDASKFLENVT-NTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALK 182
Query: 233 PGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPP 292
P G Q ES+W+H+ I++++ +++FK V YA ++PTYP G IG + CS
Sbjct: 183 PNGYCVAQCESLWIHVGTIKNMIGYAKKLFK-KVEYANISIPTYPCGCIGILCCSK--TD 239
Query: 293 VDFKHPVNPIDADDSNCNSSKGPLKFYNSEIHTAAFCLPTFAKKVIES 340
P +++ + LK+YN E H+AAF LP F K IE+
Sbjct: 240 TGLTKPNKKLESKEF------ADLKYYNYENHSAAFKLPAFLLKEIEN 281
>pdb|2HTE|A Chain A, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With 5'-Methylthioadenosine
pdb|2HTE|B Chain B, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With 5'-Methylthioadenosine
pdb|2HTE|C Chain C, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With 5'-Methylthioadenosine
pdb|2I7C|A Chain A, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With Adodato
pdb|2I7C|B Chain B, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With Adodato
pdb|2I7C|C Chain C, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With Adodato
pdb|3B7P|A Chain A, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermine
pdb|3B7P|B Chain B, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermine
pdb|3B7P|C Chain C, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermine
pdb|3RIE|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With 5'-Methylthioadenosine And
N-(3-Aminopropyl)-Trans-Cyclohexane- 1,4-Diamine
pdb|3RIE|B Chain B, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With 5'-Methylthioadenosine And
N-(3-Aminopropyl)-Trans-Cyclohexane- 1,4-Diamine
pdb|3RIE|C Chain C, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With 5'-Methylthioadenosine And
N-(3-Aminopropyl)-Trans-Cyclohexane- 1,4-Diamine
Length = 283
Score = 278 bits (710), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 139/288 (48%), Positives = 194/288 (67%), Gaps = 10/288 (3%)
Query: 53 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAY 112
WFSE S MWPG+A SLK++KIL++ KS YQNV+VF+S+TYGKVL+LDGVIQLTE+DE AY
Sbjct: 5 WFSEFSIMWPGQAFSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAY 64
Query: 113 QEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPD 172
EM+TH+P+ PK VLV+ ++RE+ ++ SVE IDICEID+ V++VSK +F +
Sbjct: 65 HEMMTHVPMTVSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKN 124
Query: 173 VAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALR 232
++ G+ED RV + I D FL+ V TYD +IVDSSDPIGPA+ LF + F+E + AL+
Sbjct: 125 ISCGYEDKRVNVFIEDASKFLENVT-NTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALK 183
Query: 233 PGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPP 292
P G Q ES+W+H+ I++++ +++FK V YA ++PTYP G IG + CS
Sbjct: 184 PNGYCVAQCESLWIHVGTIKNMIGYAKKLFK-KVEYANISIPTYPCGCIGILCCSK--TD 240
Query: 293 VDFKHPVNPIDADDSNCNSSKGPLKFYNSEIHTAAFCLPTFAKKVIES 340
P +++ + LK+YN E H+AAF LP F K IE+
Sbjct: 241 TGLTKPNKKLESKEF------ADLKYYNYENHSAAFKLPAFLLKEIEN 282
>pdb|2B2C|A Chain A, Cloning, Expression, Characterisation And Three-
Dimensional Structure Determination Of The
Caenorhabditis Elegans Spermidine Synthase
pdb|2B2C|B Chain B, Cloning, Expression, Characterisation And Three-
Dimensional Structure Determination Of The
Caenorhabditis Elegans Spermidine Synthase
Length = 314
Score = 277 bits (709), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 134/284 (47%), Positives = 196/284 (69%), Gaps = 7/284 (2%)
Query: 56 EISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEM 115
E+ WPG+A SL+V+K+LF KS YQ+V+VF+S+TYG VL+LDG++Q TERDE +YQEM
Sbjct: 38 EMGGAWPGQAFSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEM 97
Query: 116 ITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAV 175
+ HLP+ + P+PK+VL+I +LREV +H SVEK+ +CEID+MV+DV+K+F P ++
Sbjct: 98 LAHLPMFAHPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSC 157
Query: 176 GFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGG 235
GF P++ L GDG FLK + +D +I DSSDP+GPA+ LF + ++E + AL+ G
Sbjct: 158 GFSHPKLDLFCGDGFEFLKN-HKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDG 216
Query: 236 VVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPPVDF 295
++S+Q ES+WLH+ +I +VA R+IF +V YA + V TYPSG +G+++C+ D
Sbjct: 217 ILSSQGESVWLHLPLIAHLVAFNRKIFP-AVTYAQSIVSTYPSGSMGYLICAKNANR-DV 274
Query: 296 KHPVNPIDADDSNCNSSKGPLKFYNSEIHTAAFCLPTFAKKVIE 339
P + A+ + L+FYNSE+H AAF LP F K +E
Sbjct: 275 TTPARTLTAEQIKALN----LRFYNSEVHKAAFVLPQFVKNALE 314
>pdb|3BWB|A Chain A, Crystal Structure Of The Apo Form Of Spermidine Synthase
From Trypanosoma Cruzi At 2.5 A Resolution
pdb|3BWB|B Chain B, Crystal Structure Of The Apo Form Of Spermidine Synthase
From Trypanosoma Cruzi At 2.5 A Resolution
pdb|3BWC|A Chain A, Crystal Structure Of Spermidine Synthase From Trypanosoma
Cruzi In Complex With Sam At 2.3 A Resolution
pdb|3BWC|B Chain B, Crystal Structure Of Spermidine Synthase From Trypanosoma
Cruzi In Complex With Sam At 2.3 A Resolution
Length = 304
Score = 251 bits (640), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 126/297 (42%), Positives = 182/297 (61%), Gaps = 17/297 (5%)
Query: 52 GWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQS---STYGKVLILDGVIQLTERD 108
GWF E + WPG+A SL+VEK+L+ + +Q++ +F+S +G V LDG IQ+T+ D
Sbjct: 18 GWFREENDQWPGQAXSLRVEKVLYDAPTKFQHLTIFESDPKGPWGTVXALDGCIQVTDYD 77
Query: 109 ECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKQ 168
E Y E++ H LCS P P++VL+I VLREV RH +VE D+ +ID V + SKQ
Sbjct: 78 EFVYHEVLGHTSLCSHPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVXEQSKQ 137
Query: 169 FFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVA 228
FP ++ DPR T+ +GDG+AF++ P+ TYD VI+D++DP GPA +LF + F++ V
Sbjct: 138 HFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVIIDTTDPAGPASKLFGEAFYKDVL 197
Query: 229 KALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCST 288
+ L+P G+ Q ESIWL + +IE R+ SV YA VPTYP G IG ++CS
Sbjct: 198 RILKPDGICCNQGESIWLDLELIEKXSRFIRETGFASVQYALXHVPTYPCGSIGTLVCSK 257
Query: 289 EGPPVDFKHPVNPID----ADDSNCNSSKGPLKFYNSEIHTAAFCLPTFAKKVIESK 341
+ VD P+ P++ A D LK+Y+SE H A+F LP FA+ + S+
Sbjct: 258 KA-GVDVTKPLRPVEDXPFAKD---------LKYYDSEXHKASFALPRFARHINNSE 304
>pdb|3O4F|A Chain A, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|B Chain B, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|C Chain C, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|D Chain D, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|E Chain E, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|F Chain F, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|G Chain G, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|H Chain H, Crystal Structure Of Spermidine Synthase From E. Coli
Length = 294
Score = 181 bits (458), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 96/277 (34%), Positives = 156/277 (56%), Gaps = 12/277 (4%)
Query: 68 LKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNP 127
V+ +L+ K+D+Q++++F+++ +G+V+ LDGV+Q TERDE Y EM+TH+PL + +
Sbjct: 25 FAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHA 84
Query: 128 KKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVG-FEDPRVTLHI 186
K VL+I +LREV+RH +VE I + EID VV +Q+ P+ G ++DPR L I
Sbjct: 85 KHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVI 144
Query: 187 GDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWL 246
DGV F+ + T+D +I D +DPIGP + LF F+E + L PGG+ Q +L
Sbjct: 145 DDGVNFVNQTSQ-TFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFL 203
Query: 247 HMHIIEDIVANCRQI--FKGSVNYAWTTVPTYPSGVIGFMLCSTEGPPVDFKHPVNPIDA 304
E+ + + R++ + V + +PTY G++ F + +H I
Sbjct: 204 QQ---EEAIDSHRKLSHYFSDVGFYQAAIPTYYGGIMTFAWATDNDA---LRHLSTEI-- 255
Query: 305 DDSNCNSSKGPLKFYNSEIHTAAFCLPTFAKKVIESK 341
+ +S ++YN IHTAAF LP + + + S+
Sbjct: 256 IQARFLASGLKCRYYNPAIHTAAFALPQYLQDALASQ 292
>pdb|1IY9|A Chain A, Crystal Structure Of Spermidine Synthase
pdb|1IY9|B Chain B, Crystal Structure Of Spermidine Synthase
pdb|1IY9|C Chain C, Crystal Structure Of Spermidine Synthase
pdb|1IY9|D Chain D, Crystal Structure Of Spermidine Synthase
Length = 275
Score = 177 bits (448), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 97/288 (33%), Positives = 164/288 (56%), Gaps = 19/288 (6%)
Query: 58 SPMWPGEAHS------LKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECA 111
S +W E + +KV K L ++++Q++ + ++ +G +L LDG++ +E+DE
Sbjct: 1 SELWYTEKQTKNFGITMKVNKTLHTEQTEFQHLEMVETEEFGNMLFLDGMVMTSEKDEFV 60
Query: 112 YQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKQFFP 171
Y EM+ H+PL + PNP+ VLV+ V+RE+ +H SV+K + +ID V++ SK+F P
Sbjct: 61 YHEMVAHVPLFTHPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLP 120
Query: 172 DVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKAL 231
+A +DPRV + + DG + A E YD ++VDS++P+GPA LF K F+ +AKAL
Sbjct: 121 SIAGKLDDPRVDVQVDDGFMHI-AKSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKAL 179
Query: 232 RPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGP 291
+ G+ Q ++ W +I ++ + ++IF + Y +PTYPSG+ F + S +
Sbjct: 180 KEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYT-ANIPTYPSGLWTFTIGSKK-- 236
Query: 292 PVDFKHPVNPIDADDSNCNSSKGPLKFYNSEIHTAAFCLPTFAKKVIE 339
+P+ +DS + K+Y +IH AAF LP F +I+
Sbjct: 237 -------YDPLAVEDSRFFDIET--KYYTKDIHKAAFVLPKFVSDLIK 275
>pdb|1JQ3|A Chain A, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1JQ3|B Chain B, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1JQ3|C Chain C, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1JQ3|D Chain D, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1INL|A Chain A, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
pdb|1INL|B Chain B, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
pdb|1INL|C Chain C, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
pdb|1INL|D Chain D, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
Length = 296
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 88/270 (32%), Positives = 146/270 (54%), Gaps = 11/270 (4%)
Query: 68 LKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNP 127
+K+ ++++ G+SD Q + +F++ G V LDG+ TE+DE Y EM+ H+P+ PNP
Sbjct: 32 MKMNRVIYSGQSDIQRIDIFENPDLGVVFALDGITMTTEKDEFMYHEMLAHVPMFLHPNP 91
Query: 128 KKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIG 187
KKVL+I LREV +H SVEK +CE+D +V++ ++++ + GF+DPR + I
Sbjct: 92 KKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIA 151
Query: 188 DGVAFLKAVPEGTYDAVIVDSSDPI-GPAQELFEKPFFESVAKALRPGGVVSTQAESIWL 246
+G +++ + +D +I+DS+DP G LF + F+++ AL+ GV S + E +
Sbjct: 152 NGAEYVRKF-KNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFY 210
Query: 247 HMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPPVDFKHPVNPIDADD 306
+ + ++F + Y + TYPSG+ + S P+ D D
Sbjct: 211 DIGWFKLAYRRISKVFPITRVYL-GFMTTYPSGMWSYTFASKGIDPIK--------DFDP 261
Query: 307 SNCNSSKGPLKFYNSEIHTAAFCLPTFAKK 336
LK+YN E+H A+F LP F KK
Sbjct: 262 EKVRKFNKELKYYNEEVHVASFALPNFVKK 291
>pdb|3ANX|A Chain A, Crystal Structure Of TriamineAGMATINE
AMINOPROPYLTRANSFERASE (SPEE) From Thermus Thermophilus,
Complexed With Mta
pdb|3ANX|B Chain B, Crystal Structure Of TriamineAGMATINE
AMINOPROPYLTRANSFERASE (SPEE) From Thermus Thermophilus,
Complexed With Mta
Length = 314
Score = 147 bits (372), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 98/284 (34%), Positives = 150/284 (52%), Gaps = 16/284 (5%)
Query: 53 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAY 112
+F ++P E ++E+++ GK+ +Q+ +F+S +GKVLILD +Q TERDE Y
Sbjct: 7 FFEHVTPY---ETLVRRMERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIY 63
Query: 113 QEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPD 172
E + H + + P PK+VL++ LREV +H +VEK + +ID +V+V+K+ P+
Sbjct: 64 HETLVHPAMLTHPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPE 123
Query: 173 VAVG-FEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIG---PAQELFEKPFFESVA 228
G F+DPR L I D A+L+ E YD VI+D +DP+G PA+ L+ F+ V
Sbjct: 124 WHQGAFDDPRAVLVIDDARAYLERTEE-RYDVVIIDLTDPVGEDNPARLLYTVEFYRLVK 182
Query: 229 KALRPGGVVSTQAESIWLHMHIIEDIV-ANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCS 287
L PGGV+ QA I L H + +V R+ F+ +Y +P + GF+L S
Sbjct: 183 AHLNPGGVMGMQAGMILLTHHRVHPVVHRTVREAFRYVRSYK-NHIPGFFLN-FGFLLAS 240
Query: 288 TEGPPVDFKHPVNPIDADDSNCNSSKGPLKFYNSEIHTAAFCLP 331
P F V I+A N + L+ + A F LP
Sbjct: 241 DAFDPAAFSEGV--IEARIRERNLA---LRHLTAPYLEAMFVLP 279
>pdb|1UIR|A Chain A, Crystal Structure Of Polyamine Aminopropyltransfease From
Thermus Thermophilus
pdb|1UIR|B Chain B, Crystal Structure Of Polyamine Aminopropyltransfease From
Thermus Thermophilus
Length = 314
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 97/284 (34%), Positives = 149/284 (52%), Gaps = 16/284 (5%)
Query: 53 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAY 112
+F ++P E ++E+++ GK+ +Q+ +F+S +GKVLILD +Q TERDE Y
Sbjct: 7 FFEHVTPY---ETLVRRMERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIY 63
Query: 113 QEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPD 172
E + H + + P PK+VL++ LREV +H +VEK + +ID +V+V+K+ P+
Sbjct: 64 HETLVHPAMLTHPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPE 123
Query: 173 VAVG-FEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIG---PAQELFEKPFFESVA 228
G F+DPR L I D A+L+ E YD VI+D +DP+G PA+ L+ F+ V
Sbjct: 124 WHQGAFDDPRAVLVIDDARAYLERTEE-RYDVVIIDLTDPVGEDNPARLLYTVEFYRLVK 182
Query: 229 KALRPGGVVSTQAESIWLHMHIIEDIV-ANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCS 287
L PGGV+ Q I L H + +V R+ F+ +Y +P + GF+L S
Sbjct: 183 AHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSYK-NHIPGFFLN-FGFLLAS 240
Query: 288 TEGPPVDFKHPVNPIDADDSNCNSSKGPLKFYNSEIHTAAFCLP 331
P F V I+A N + L+ + A F LP
Sbjct: 241 DAFDPAAFSEGV--IEARIRERNLA---LRHLTAPYLEAMFVLP 279
>pdb|1MJF|A Chain A, Putative Spermidine Synthetase From Pyrococcus Furiosus
Pfu- 132382
pdb|1MJF|B Chain B, Putative Spermidine Synthetase From Pyrococcus Furiosus
Pfu- 132382
Length = 281
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 83/289 (28%), Positives = 149/289 (51%), Gaps = 31/289 (10%)
Query: 63 GEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLC 122
G + K++K +++ S YQ + V+++ +G++L LDG +QL E +Y E + H +
Sbjct: 12 GYGVAFKIKKKIYEKLSKYQKIEVYETEGFGRLLALDGTVQLVTLGERSYHEPLVHPAML 71
Query: 123 SIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKQFFP------DVAVG 176
+ P PK+VLVI +REV +H V+++ + EID+ V+ VSK + +
Sbjct: 72 AHPKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLN 130
Query: 177 FEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGV 236
+ + L IGDG F+K +D +I DS+DP+GPA+ LF + F+ V AL G+
Sbjct: 131 GKHEKAKLTIGDGFEFIKN--NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGI 188
Query: 237 VSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGF-----MLCSTEGP 291
TQA S++L +++++ +++ K + V Y VIG+ L +G
Sbjct: 189 YVTQAGSVYL---FTDELISAYKEMKK-----VFDRVYYYSFPVIGYASPWAFLVGVKG- 239
Query: 292 PVDFKHPVNPIDADDSNCNSSKGPLKFYNSEIHTAAFCLPTFAKKVIES 340
+DF ID + + K L++Y+ +H F +P + ++ ++
Sbjct: 240 DIDF----TKIDRE----RAKKLQLEYYDPLMHETLFQMPKYIRETLQR 280
>pdb|2E5W|A Chain A, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3
pdb|2E5W|B Chain B, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3
pdb|2E5W|C Chain C, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3
pdb|2E5W|D Chain D, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3
pdb|2ZSU|A Chain A, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
pdb|2ZSU|B Chain B, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
pdb|2ZSU|C Chain C, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
pdb|2ZSU|D Chain D, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
pdb|2ZSU|E Chain E, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
pdb|2ZSU|F Chain F, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
Length = 280
Score = 118 bits (295), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 82/282 (29%), Positives = 148/282 (52%), Gaps = 30/282 (10%)
Query: 63 GEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLC 122
G + KV++ + + +S+YQ + V+++ +GK+L +DG +QL E +Y E + H +
Sbjct: 13 GYGVAFKVKRKILEEQSEYQKIEVYETEGFGKLLAIDGTVQLVTEGEKSYHEPLVHPAML 72
Query: 123 SIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKQFFP------DVAVG 176
+ PNP++VL+I +REV +H VE++ + EIDK V+++S ++ + +
Sbjct: 73 AHPNPRRVLIIGGGDGGAIREVLKHEEVEEVIMVEIDKKVIEISAKYIGIDGGILEKMLS 132
Query: 177 FEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGV 236
+ + L IGDGV F++ +D +IVDS+DP+GPA+ LF + F+++ +AL G+
Sbjct: 133 DKHEKGKLIIGDGVKFIEE--NSGFDVIIVDSTDPVGPAEMLFSEEFYKNAYRALNDPGI 190
Query: 237 VSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGF-----MLCSTEGP 291
TQA S++L R++F Y++ VIG+ L +G
Sbjct: 191 YVTQAGSVYLFTDEFLTAYRKMRKVFDKVYYYSFP--------VIGYASPWAFLVGVKG- 241
Query: 292 PVDFKHPVNPIDADDSNCNSSKGPLKFYNSEIHTAAFCLPTF 333
+DF +DA+ K L++Y+ + H F +P +
Sbjct: 242 SIDF----MKVDAE----KGKKLGLEYYDPDKHETLFQMPRY 275
>pdb|3C6K|A Chain A, Crystal Structure Of Human Spermine Synthase In Complex
With Spermidine And 5-Methylthioadenosine
pdb|3C6K|B Chain B, Crystal Structure Of Human Spermine Synthase In Complex
With Spermidine And 5-Methylthioadenosine
pdb|3C6K|C Chain C, Crystal Structure Of Human Spermine Synthase In Complex
With Spermidine And 5-Methylthioadenosine
pdb|3C6K|D Chain D, Crystal Structure Of Human Spermine Synthase In Complex
With Spermidine And 5-Methylthioadenosine
pdb|3C6M|A Chain A, Crystal Structure Of Human Spermine Synthase In Complex
With Spermine And 5-Methylthioadenosine
pdb|3C6M|B Chain B, Crystal Structure Of Human Spermine Synthase In Complex
With Spermine And 5-Methylthioadenosine
pdb|3C6M|C Chain C, Crystal Structure Of Human Spermine Synthase In Complex
With Spermine And 5-Methylthioadenosine
pdb|3C6M|D Chain D, Crystal Structure Of Human Spermine Synthase In Complex
With Spermine And 5-Methylthioadenosine
Length = 381
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 85/203 (41%), Gaps = 18/203 (8%)
Query: 57 ISPMWP---GEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQ 113
I WP G ++++++ S YQN+ + S +G +LIL G + L E D AY
Sbjct: 135 IDRYWPTADGRLVEYDIDEVVYDEDSPYQNIKILHSKQFGNILILSGDVNLAESD-LAYT 193
Query: 114 EMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKQFFP-- 171
I K VL++ +L E+ + + + + EID+MV+D K++
Sbjct: 194 RAIMGSGKEDYTG-KDVLILGGGDGGILCEIVKLKP-KMVTMVEIDQMVIDGCKKYMRKT 251
Query: 172 --DVAVGFEDPRVTLHIGDGVAFLKA-VPEGT-YDAVIVD------SSDPIGPAQELFEK 221
DV + + I D + LK EG +D VI D S+ P + F +
Sbjct: 252 CGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLR 311
Query: 222 PFFESVAKALRPGGVVSTQAESI 244
+ K L+ G TQ +
Sbjct: 312 LILDLSMKVLKQDGKYFTQGNCV 334
>pdb|3NKM|A Chain A, Crystal Structure Of Mouse Autotaxin
pdb|3NKN|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
14:0-Lpa
pdb|3NKO|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
16:0-Lpa
pdb|3NKP|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
18:1-Lpa
pdb|3NKQ|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
18:3-Lpa
pdb|3NKR|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
22:6-Lpa
Length = 831
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 59/153 (38%), Gaps = 30/153 (19%)
Query: 192 FLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAK--ALRPGGVVSTQAESIWLHMH 249
+L + PE YDA +V + P+ PA + F + K A GV + +
Sbjct: 645 YLSSSPEAKYDAFLVTNMVPMYPAFKRVWTYFQRVLVKKYASERNGVNVISGPIFDYNYN 704
Query: 250 IIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPPVDFKHPVNPIDA----- 304
+ DI +Q +GS VPT+ +I L DF P + D
Sbjct: 705 GLRDIEDEIKQYVEGSS----IPVPTHYYSIITSCL--------DFTQPADKCDGPLSVS 752
Query: 305 ---------DDSNCNSSKGPLKFYNS--EIHTA 326
+D +CNSS+ K+ ++HTA
Sbjct: 753 SFILPHRPDNDESCNSSEDESKWVEELMKMHTA 785
>pdb|3M9W|A Chain A, Open Ligand-Free Crystal Structure Of Xylose Binding
Protein From Escherichia Coli
pdb|3M9X|A Chain A, Open Liganded Crystal Structure Of Xylose Binding Protein
From Escherichia Coli
pdb|3MA0|A Chain A, Closed Liganded Crystal Structure Of Xylose Binding
Protein From Escherichia Coli
pdb|3MA0|B Chain B, Closed Liganded Crystal Structure Of Xylose Binding
Protein From Escherichia Coli
pdb|3MA0|C Chain C, Closed Liganded Crystal Structure Of Xylose Binding
Protein From Escherichia Coli
Length = 313
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 16/104 (15%)
Query: 130 VLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDG 189
VLVI VL V + + E I + D+M+ D F+ + F++ +V
Sbjct: 61 VLVIIPYNGQVLSNVVKEAKQEGIKVLAYDRMINDADIDFY----ISFDNEKVGEL--QA 114
Query: 190 VAFLKAVPEGTYDAVIVDSSDPIGPAQELFE-------KPFFES 226
A + VP+G Y + P+ +LF KP+ +S
Sbjct: 115 KALVDIVPQGNY---FLMGGSPVDNNAKLFRAGQMKVLKPYVDS 155
>pdb|3IFR|A Chain A, The Crystal Structure Of Xylulose Kinase From
Rhodospirillum Rubrum
pdb|3IFR|B Chain B, The Crystal Structure Of Xylulose Kinase From
Rhodospirillum Rubrum
Length = 508
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 41 KQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILD 99
+P +SS PGW E W A ++ E G+SD++ + + V++LD
Sbjct: 35 SRPTTLSSPHPGWAEEDPAQWWDNARAVLAELKTTAGESDWRPGGICVTGXLPAVVLLD 93
>pdb|3DXN|A Chain A, Crystal Structure Of The Calcium-dependent Kinase From
Toxoplasma Gondii, 541.m00134, Kinase Domain
Length = 287
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 71 EKILFQGKSD-YQNVMVFQSSTYGKVLILDGVIQLTER 107
E + FQG SD YQ V S YG+VL+ + ER
Sbjct: 12 ENLYFQGLSDRYQRVKKLGSGAYGEVLLCKDKLTGAER 49
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,376,243
Number of Sequences: 62578
Number of extensions: 420751
Number of successful extensions: 1106
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1053
Number of HSP's gapped (non-prelim): 27
length of query: 345
length of database: 14,973,337
effective HSP length: 100
effective length of query: 245
effective length of database: 8,715,537
effective search space: 2135306565
effective search space used: 2135306565
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)