Query 019187
Match_columns 345
No_of_seqs 435 out of 3087
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 07:24:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019187.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019187hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02366 spermidine synthase 100.0 2.2E-64 4.8E-69 480.6 31.7 304 38-342 3-306 (308)
2 PRK00536 speE spermidine synth 100.0 3.4E-62 7.3E-67 453.8 25.1 261 52-343 1-261 (262)
3 KOG1562 Spermidine synthase [A 100.0 3.2E-61 7E-66 442.0 13.5 327 11-343 7-336 (337)
4 PRK00811 spermidine synthase; 100.0 2.2E-58 4.8E-63 436.2 28.7 281 50-339 2-283 (283)
5 COG0421 SpeE Spermidine syntha 100.0 5.1E-58 1.1E-62 430.4 24.4 280 50-339 2-281 (282)
6 PLN02823 spermine synthase 100.0 1.7E-55 3.6E-60 423.7 30.0 282 50-341 29-315 (336)
7 TIGR00417 speE spermidine synt 100.0 6.5E-53 1.4E-57 396.5 26.5 270 53-333 1-270 (270)
8 PF01564 Spermine_synth: Sperm 100.0 6.9E-52 1.5E-56 384.2 25.2 242 52-294 1-243 (246)
9 PRK03612 spermidine synthase; 100.0 3.2E-45 6.9E-50 372.5 23.3 255 64-335 232-494 (521)
10 PRK01581 speE spermidine synth 100.0 3.2E-44 6.9E-49 344.5 24.8 218 69-291 95-316 (374)
11 COG4262 Predicted spermidine s 100.0 2.7E-43 5.9E-48 331.0 19.5 249 67-333 231-483 (508)
12 PRK04457 spermidine synthase; 99.9 9.6E-25 2.1E-29 204.5 22.5 200 76-289 11-217 (262)
13 COG2521 Predicted archaeal met 99.7 7.3E-16 1.6E-20 138.7 15.7 164 94-261 102-268 (287)
14 PF12847 Methyltransf_18: Meth 99.6 3.4E-15 7.5E-20 120.8 8.8 109 127-241 2-111 (112)
15 COG4123 Predicted O-methyltran 99.5 7.9E-13 1.7E-17 121.9 16.8 131 125-263 43-188 (248)
16 PF13659 Methyltransf_26: Meth 99.5 1.8E-13 4E-18 111.6 10.7 110 128-241 2-115 (117)
17 PF05175 MTS: Methyltransferas 99.5 8.2E-14 1.8E-18 122.3 8.6 108 126-240 31-139 (170)
18 TIGR00091 tRNA (guanine-N(7)-) 99.5 8.8E-13 1.9E-17 118.2 14.1 114 126-243 16-134 (194)
19 PRK00121 trmB tRNA (guanine-N( 99.5 1.2E-12 2.5E-17 118.2 14.5 127 126-260 40-171 (202)
20 PF01596 Methyltransf_3: O-met 99.4 1.1E-12 2.3E-17 118.7 10.4 107 125-241 44-155 (205)
21 PF13847 Methyltransf_31: Meth 99.4 1.6E-12 3.6E-17 111.5 11.0 108 126-242 3-111 (152)
22 TIGR02469 CbiT precorrin-6Y C5 99.4 2.4E-12 5.3E-17 105.4 10.3 104 126-241 19-122 (124)
23 TIGR00138 gidB 16S rRNA methyl 99.4 3.3E-12 7.1E-17 113.4 11.9 101 126-241 42-142 (181)
24 PLN02476 O-methyltransferase 99.4 1.8E-11 4E-16 115.2 16.9 107 125-241 117-228 (278)
25 PRK00107 gidB 16S rRNA methylt 99.4 1.5E-11 3.2E-16 109.7 15.4 103 125-242 44-146 (187)
26 PRK15128 23S rRNA m(5)C1962 me 99.4 5.1E-12 1.1E-16 125.0 13.6 129 126-257 220-355 (396)
27 PRK15001 SAM-dependent 23S rib 99.4 2.7E-12 5.9E-17 125.8 11.2 135 115-263 220-355 (378)
28 TIGR02752 MenG_heptapren 2-hep 99.4 1.6E-11 3.4E-16 112.3 15.5 107 125-241 44-151 (231)
29 PLN02781 Probable caffeoyl-CoA 99.4 3.2E-12 6.9E-17 118.0 10.8 106 125-240 67-177 (234)
30 COG4122 Predicted O-methyltran 99.4 4.4E-12 9.5E-17 115.2 11.0 107 125-241 58-166 (219)
31 PRK14121 tRNA (guanine-N(7)-)- 99.4 1.2E-11 2.6E-16 121.2 14.2 117 126-246 122-240 (390)
32 COG2226 UbiE Methylase involve 99.3 2E-11 4.2E-16 112.4 14.5 106 126-241 51-156 (238)
33 PF08241 Methyltransf_11: Meth 99.3 2.8E-12 6.1E-17 99.7 7.4 95 131-239 1-95 (95)
34 PRK01683 trans-aconitate 2-met 99.3 1.1E-11 2.3E-16 115.5 12.2 101 125-241 30-130 (258)
35 COG4106 Tam Trans-aconitate me 99.3 5.1E-12 1.1E-16 112.9 9.0 115 112-245 19-133 (257)
36 PF01209 Ubie_methyltran: ubiE 99.3 3.8E-12 8.2E-17 117.4 8.5 107 125-241 46-153 (233)
37 COG1092 Predicted SAM-dependen 99.3 1.1E-11 2.3E-16 121.7 12.1 129 126-257 217-352 (393)
38 PRK00377 cbiT cobalt-precorrin 99.3 2.6E-11 5.6E-16 108.9 13.6 121 125-260 39-160 (198)
39 PRK15451 tRNA cmo(5)U34 methyl 99.3 1.6E-11 3.5E-16 114.0 12.6 108 125-241 55-164 (247)
40 TIGR03533 L3_gln_methyl protei 99.3 3.3E-11 7.2E-16 114.3 14.9 155 79-242 76-252 (284)
41 PRK08287 cobalt-precorrin-6Y C 99.3 2.1E-11 4.6E-16 108.3 12.6 102 125-241 30-131 (187)
42 PRK14966 unknown domain/N5-glu 99.3 6.2E-11 1.3E-15 117.0 16.6 152 79-241 209-381 (423)
43 PRK11036 putative S-adenosyl-L 99.3 1.6E-11 3.4E-16 114.5 11.9 107 125-241 43-149 (255)
44 PRK14103 trans-aconitate 2-met 99.3 1E-11 2.2E-16 115.8 10.5 99 125-241 28-126 (255)
45 COG2227 UbiG 2-polyprenyl-3-me 99.3 1.8E-11 4E-16 111.5 11.5 105 126-243 59-163 (243)
46 TIGR03534 RF_mod_PrmC protein- 99.3 8.1E-11 1.7E-15 108.6 15.9 109 126-241 87-217 (251)
47 PF13649 Methyltransf_25: Meth 99.3 6.1E-12 1.3E-16 100.5 6.7 97 130-235 1-101 (101)
48 PRK11207 tellurite resistance 99.3 2.2E-11 4.7E-16 109.4 11.1 103 126-239 30-132 (197)
49 PRK09489 rsmC 16S ribosomal RN 99.3 1.5E-11 3.3E-16 119.5 10.6 108 127-243 197-305 (342)
50 TIGR03704 PrmC_rel_meth putati 99.3 5.2E-11 1.1E-15 111.1 13.7 154 78-241 40-216 (251)
51 COG2242 CobL Precorrin-6B meth 99.3 8.4E-11 1.8E-15 103.6 14.0 118 125-260 33-150 (187)
52 COG2813 RsmC 16S RNA G1207 met 99.3 1.5E-11 3.2E-16 115.8 9.8 131 115-263 150-281 (300)
53 PRK11805 N5-glutamine S-adenos 99.3 1.1E-10 2.3E-15 112.1 15.7 155 79-242 88-264 (307)
54 TIGR00080 pimt protein-L-isoas 99.3 3.2E-11 6.9E-16 109.7 11.5 101 125-241 76-177 (215)
55 COG2230 Cfa Cyclopropane fatty 99.3 2.2E-11 4.8E-16 114.2 10.6 106 125-242 71-177 (283)
56 PRK07402 precorrin-6B methylas 99.3 9.6E-11 2.1E-15 104.9 14.1 105 126-243 40-144 (196)
57 PLN02233 ubiquinone biosynthes 99.3 3.6E-11 7.8E-16 112.7 11.7 109 125-240 72-181 (261)
58 PRK10909 rsmD 16S rRNA m(2)G96 99.3 2.1E-10 4.6E-15 103.3 16.0 146 83-241 12-159 (199)
59 PRK04266 fibrillarin; Provisio 99.3 2.5E-10 5.5E-15 104.8 16.7 103 125-240 71-175 (226)
60 COG2518 Pcm Protein-L-isoaspar 99.3 3.6E-11 7.9E-16 107.9 10.5 100 125-242 71-170 (209)
61 PRK13942 protein-L-isoaspartat 99.3 4.8E-11 1E-15 108.5 11.5 101 125-241 75-176 (212)
62 PLN02589 caffeoyl-CoA O-methyl 99.3 3.4E-11 7.5E-16 111.8 10.8 106 125-240 78-189 (247)
63 TIGR00740 methyltransferase, p 99.2 1.2E-10 2.7E-15 107.4 13.8 108 125-241 52-161 (239)
64 PF02353 CMAS: Mycolic acid cy 99.2 2.6E-11 5.5E-16 114.4 9.2 107 124-242 60-167 (273)
65 PRK00517 prmA ribosomal protei 99.2 2.1E-10 4.6E-15 106.8 15.1 131 125-288 118-249 (250)
66 PF02390 Methyltransf_4: Putat 99.2 5.4E-11 1.2E-15 106.9 10.7 124 129-260 20-148 (195)
67 COG2519 GCD14 tRNA(1-methylade 99.2 7.4E-11 1.6E-15 108.3 11.7 118 125-261 93-211 (256)
68 PF08242 Methyltransf_12: Meth 99.2 2E-12 4.3E-17 102.7 1.2 99 131-237 1-99 (99)
69 PRK14967 putative methyltransf 99.2 2.4E-10 5.1E-15 104.5 14.4 106 126-240 36-158 (223)
70 PRK01544 bifunctional N5-gluta 99.2 7.9E-11 1.7E-15 120.1 12.3 156 79-241 70-269 (506)
71 PRK13944 protein-L-isoaspartat 99.2 7.7E-11 1.7E-15 106.5 11.0 100 126-240 72-172 (205)
72 PLN02244 tocopherol O-methyltr 99.2 6E-11 1.3E-15 115.3 10.9 107 125-241 117-223 (340)
73 TIGR00537 hemK_rel_arch HemK-r 99.2 1.8E-10 3.9E-15 101.7 12.6 105 126-241 19-140 (179)
74 PRK09328 N5-glutamine S-adenos 99.2 4.6E-10 9.9E-15 105.3 15.9 141 92-241 76-238 (275)
75 TIGR02072 BioC biotin biosynth 99.2 1E-10 2.3E-15 106.5 11.1 103 125-241 33-135 (240)
76 TIGR00536 hemK_fam HemK family 99.2 2.6E-10 5.7E-15 108.1 14.0 155 79-242 69-245 (284)
77 PRK11783 rlmL 23S rRNA m(2)G24 99.2 1.1E-10 2.4E-15 123.5 12.5 114 126-243 538-658 (702)
78 PLN02396 hexaprenyldihydroxybe 99.2 8.8E-11 1.9E-15 113.2 10.7 104 126-241 131-235 (322)
79 TIGR00477 tehB tellurite resis 99.2 8.5E-11 1.8E-15 105.4 9.9 102 126-239 30-131 (195)
80 PTZ00098 phosphoethanolamine N 99.2 1.3E-10 2.8E-15 109.1 11.4 105 125-241 51-156 (263)
81 PLN03075 nicotianamine synthas 99.2 2.1E-10 4.5E-15 108.8 12.1 109 126-241 123-233 (296)
82 TIGR00406 prmA ribosomal prote 99.2 3.6E-10 7.7E-15 107.5 13.7 118 126-262 159-276 (288)
83 smart00828 PKS_MT Methyltransf 99.2 8.2E-11 1.8E-15 107.1 9.0 104 128-241 1-104 (224)
84 COG0220 Predicted S-adenosylme 99.2 3.7E-10 8E-15 103.6 13.1 114 128-245 50-168 (227)
85 COG2264 PrmA Ribosomal protein 99.2 1.4E-10 3E-15 109.8 10.1 138 125-288 161-299 (300)
86 PF01135 PCMT: Protein-L-isoas 99.2 1.5E-10 3.2E-15 105.1 9.5 113 110-241 59-172 (209)
87 PF10672 Methyltrans_SAM: S-ad 99.2 2.1E-10 4.5E-15 108.6 10.7 132 126-260 123-257 (286)
88 PRK10258 biotin biosynthesis p 99.2 1.9E-10 4.2E-15 106.7 10.4 99 126-241 42-140 (251)
89 PF06325 PrmA: Ribosomal prote 99.2 7.6E-11 1.6E-15 112.1 7.8 135 125-288 160-294 (295)
90 PF05401 NodS: Nodulation prot 99.2 2.7E-10 5.8E-15 101.3 10.7 125 125-262 42-172 (201)
91 KOG2352 Predicted spermine/spe 99.1 6E-11 1.3E-15 117.4 6.8 148 110-263 272-436 (482)
92 PRK11188 rrmJ 23S rRNA methylt 99.1 5.7E-10 1.2E-14 101.3 12.3 120 125-263 50-183 (209)
93 PRK14968 putative methyltransf 99.1 6.1E-10 1.3E-14 98.0 12.2 112 125-243 22-150 (188)
94 PRK11873 arsM arsenite S-adeno 99.1 3.5E-10 7.5E-15 106.3 11.0 106 125-240 76-182 (272)
95 PRK12335 tellurite resistance 99.1 2.5E-10 5.5E-15 108.4 10.0 102 126-239 120-221 (287)
96 COG2890 HemK Methylase of poly 99.1 1.7E-09 3.6E-14 102.5 15.3 153 78-242 66-239 (280)
97 KOG1270 Methyltransferases [Co 99.1 1.5E-10 3.3E-15 106.4 6.9 102 127-241 90-195 (282)
98 PRK00312 pcm protein-L-isoaspa 99.1 5.7E-10 1.2E-14 101.1 10.4 99 125-241 77-175 (212)
99 TIGR03587 Pse_Me-ase pseudamin 99.1 2.6E-09 5.5E-14 96.7 14.3 99 125-239 42-140 (204)
100 TIGR00438 rrmJ cell division p 99.1 1.5E-09 3.2E-14 96.6 12.6 119 125-262 31-163 (188)
101 PRK06922 hypothetical protein; 99.1 5.4E-10 1.2E-14 115.2 10.6 112 126-242 418-538 (677)
102 PLN02336 phosphoethanolamine N 99.1 7.7E-10 1.7E-14 112.0 11.5 105 125-241 265-369 (475)
103 PLN02490 MPBQ/MSBQ methyltrans 99.1 9.4E-10 2E-14 106.6 10.9 102 126-240 113-214 (340)
104 KOG1540 Ubiquinone biosynthesi 99.1 1.6E-09 3.4E-14 99.3 11.6 107 126-239 100-212 (296)
105 TIGR00452 methyltransferase, p 99.1 1.8E-09 4E-14 103.6 12.6 115 110-241 108-225 (314)
106 PRK08317 hypothetical protein; 99.1 1.2E-09 2.6E-14 99.3 10.8 106 125-241 18-124 (241)
107 PRK11705 cyclopropane fatty ac 99.0 1.2E-09 2.6E-14 107.9 11.3 101 125-241 166-267 (383)
108 smart00650 rADc Ribosomal RNA 99.0 1.7E-09 3.8E-14 94.6 10.9 100 126-242 13-114 (169)
109 PRK14904 16S rRNA methyltransf 99.0 4.6E-09 9.9E-14 105.7 15.4 114 126-246 250-382 (445)
110 PHA03411 putative methyltransf 99.0 1.6E-09 3.4E-14 101.6 11.0 110 126-247 64-190 (279)
111 PRK13943 protein-L-isoaspartat 99.0 2.7E-09 5.9E-14 102.8 13.0 100 126-241 80-180 (322)
112 PF08704 GCD14: tRNA methyltra 99.0 1.6E-09 3.4E-14 100.6 10.7 120 124-260 38-161 (247)
113 cd02440 AdoMet_MTases S-adenos 99.0 2.9E-09 6.2E-14 82.3 10.6 103 129-240 1-103 (107)
114 PRK14902 16S rRNA methyltransf 99.0 1.9E-09 4.2E-14 108.4 11.9 116 125-245 249-383 (444)
115 PRK15068 tRNA mo(5)U34 methylt 99.0 2.9E-09 6.2E-14 102.9 12.4 117 110-240 109-225 (322)
116 PRK10901 16S rRNA methyltransf 99.0 3.4E-09 7.5E-14 106.1 13.5 117 125-246 243-377 (427)
117 PRK11088 rrmA 23S rRNA methylt 99.0 2E-09 4.3E-14 101.4 11.1 94 126-241 85-181 (272)
118 PRK00216 ubiE ubiquinone/menaq 99.0 2.1E-09 4.5E-14 98.0 10.8 106 126-240 51-157 (239)
119 TIGR00446 nop2p NOL1/NOP2/sun 99.0 4.6E-09 1E-13 98.7 13.3 113 126-244 71-202 (264)
120 TIGR00095 RNA methyltransferas 99.0 4.4E-09 9.5E-14 94.0 12.5 107 126-241 49-159 (189)
121 PHA03412 putative methyltransf 99.0 2.2E-09 4.8E-14 98.5 10.6 101 126-239 49-160 (241)
122 PF03602 Cons_hypoth95: Conser 99.0 1.1E-09 2.3E-14 97.5 8.3 109 126-242 42-154 (183)
123 TIGR01177 conserved hypothetic 99.0 2.8E-09 6E-14 103.2 11.6 109 125-241 181-294 (329)
124 PLN02336 phosphoethanolamine N 99.0 1.6E-09 3.4E-14 109.8 10.0 106 126-241 37-142 (475)
125 PF03848 TehB: Tellurite resis 99.0 1.6E-09 3.4E-14 96.9 8.5 105 125-241 29-133 (192)
126 TIGR01934 MenG_MenH_UbiE ubiqu 99.0 3.2E-09 7E-14 95.8 10.6 104 126-241 39-143 (223)
127 PRK14903 16S rRNA methyltransf 99.0 7.1E-09 1.5E-13 103.9 14.1 115 125-244 236-369 (431)
128 TIGR02716 C20_methyl_CrtF C-20 99.0 3.3E-09 7.1E-14 101.5 10.7 106 126-241 149-254 (306)
129 PLN02672 methionine S-methyltr 99.0 1E-08 2.2E-13 111.6 15.7 151 91-243 84-280 (1082)
130 KOG2899 Predicted methyltransf 99.0 4.7E-09 1E-13 95.5 10.8 116 126-246 58-213 (288)
131 KOG4300 Predicted methyltransf 99.0 1.5E-09 3.1E-14 96.7 7.1 104 127-240 77-181 (252)
132 TIGR03438 probable methyltrans 99.0 2.4E-08 5.2E-13 95.6 16.1 112 125-241 62-177 (301)
133 PTZ00146 fibrillarin; Provisio 99.0 4.2E-08 9.2E-13 92.8 17.4 150 124-289 130-287 (293)
134 KOG1271 Methyltransferases [Ge 98.9 6.8E-09 1.5E-13 90.8 10.7 111 126-243 67-183 (227)
135 PRK13168 rumA 23S rRNA m(5)U19 98.9 9.5E-09 2.1E-13 103.4 13.5 102 126-241 297-400 (443)
136 TIGR00479 rumA 23S rRNA (uraci 98.9 3.3E-08 7.1E-13 99.1 17.2 103 126-241 292-396 (431)
137 TIGR03840 TMPT_Se_Te thiopurin 98.9 5.7E-09 1.2E-13 95.0 10.7 111 125-240 33-151 (213)
138 TIGR02021 BchM-ChlM magnesium 98.9 8.9E-09 1.9E-13 93.7 11.9 102 126-240 55-157 (219)
139 PF13489 Methyltransf_23: Meth 98.9 4E-09 8.7E-14 90.0 9.0 96 125-242 21-116 (161)
140 TIGR00563 rsmB ribosomal RNA s 98.9 9.6E-09 2.1E-13 102.9 12.9 117 126-245 238-372 (426)
141 PRK05134 bifunctional 3-demeth 98.9 6.6E-09 1.4E-13 95.2 10.8 104 126-241 48-151 (233)
142 TIGR01983 UbiG ubiquinone bios 98.9 7.9E-09 1.7E-13 93.9 10.5 105 126-241 45-149 (224)
143 PRK03522 rumB 23S rRNA methylu 98.9 1.6E-08 3.4E-13 97.4 13.0 103 126-242 173-275 (315)
144 PRK14901 16S rRNA methyltransf 98.9 1.7E-08 3.7E-13 101.3 13.6 116 125-244 251-387 (434)
145 COG2263 Predicted RNA methylas 98.9 1.3E-08 2.9E-13 89.6 11.0 93 126-231 45-137 (198)
146 PF05891 Methyltransf_PK: AdoM 98.9 2E-09 4.3E-14 97.2 5.8 133 100-241 26-161 (218)
147 TIGR02085 meth_trns_rumB 23S r 98.9 1.9E-08 4.2E-13 99.0 13.3 102 126-241 233-334 (374)
148 PRK05785 hypothetical protein; 98.9 2.6E-08 5.7E-13 91.4 12.2 91 126-235 51-141 (226)
149 PRK06202 hypothetical protein; 98.9 1.3E-08 2.9E-13 93.4 10.1 102 125-238 59-164 (232)
150 PRK01544 bifunctional N5-gluta 98.8 4.2E-08 9.1E-13 100.2 14.0 115 126-244 347-465 (506)
151 PRK13255 thiopurine S-methyltr 98.8 2E-08 4.2E-13 91.8 10.4 108 126-238 37-152 (218)
152 PRK07580 Mg-protoporphyrin IX 98.8 3.5E-08 7.7E-13 89.9 12.0 102 125-238 62-163 (230)
153 COG0742 N6-adenine-specific me 98.8 5.1E-08 1.1E-12 86.3 12.3 110 126-242 43-155 (187)
154 KOG1663 O-methyltransferase [S 98.8 1.2E-07 2.6E-12 86.0 14.4 123 104-241 56-183 (237)
155 KOG3010 Methyltransferase [Gen 98.8 9E-09 2E-13 93.7 7.1 107 124-242 31-138 (261)
156 PRK05031 tRNA (uracil-5-)-meth 98.8 1.6E-07 3.5E-12 92.2 16.5 99 128-241 208-320 (362)
157 PRK04338 N(2),N(2)-dimethylgua 98.8 3.9E-08 8.5E-13 97.0 11.3 100 128-241 59-158 (382)
158 TIGR02143 trmA_only tRNA (urac 98.8 2.5E-07 5.4E-12 90.5 16.8 100 127-241 198-311 (353)
159 PF07021 MetW: Methionine bios 98.8 3.5E-08 7.5E-13 87.6 9.7 72 125-208 12-83 (193)
160 smart00138 MeTrc Methyltransfe 98.8 1.8E-08 3.8E-13 94.8 8.0 111 126-240 99-241 (264)
161 PLN02585 magnesium protoporphy 98.8 9.2E-08 2E-12 92.0 12.9 105 126-240 144-249 (315)
162 KOG2904 Predicted methyltransf 98.7 2.3E-07 5E-12 86.0 13.8 159 78-242 100-286 (328)
163 COG4976 Predicted methyltransf 98.7 2.9E-09 6.3E-14 96.2 1.2 102 127-243 126-227 (287)
164 TIGR00308 TRM1 tRNA(guanine-26 98.7 1.2E-07 2.6E-12 93.2 11.7 101 128-241 46-147 (374)
165 PF00891 Methyltransf_2: O-met 98.7 7.7E-08 1.7E-12 88.8 8.3 99 125-241 99-199 (241)
166 PF02475 Met_10: Met-10+ like- 98.6 1.8E-07 3.8E-12 84.3 9.3 129 91-238 70-199 (200)
167 PF08003 Methyltransf_9: Prote 98.6 3.9E-07 8.5E-12 86.2 11.5 114 109-241 101-219 (315)
168 PRK13256 thiopurine S-methyltr 98.6 3.4E-07 7.5E-12 83.9 10.7 112 125-240 42-162 (226)
169 KOG1661 Protein-L-isoaspartate 98.6 1.3E-07 2.9E-12 84.5 7.6 118 110-240 67-192 (237)
170 PTZ00338 dimethyladenosine tra 98.6 6.1E-07 1.3E-11 85.6 12.3 101 126-241 36-137 (294)
171 PRK14896 ksgA 16S ribosomal RN 98.6 6.2E-07 1.3E-11 83.9 11.4 73 126-210 29-101 (258)
172 TIGR02081 metW methionine bios 98.5 3.3E-07 7.2E-12 81.9 8.9 92 126-233 13-104 (194)
173 PF05724 TPMT: Thiopurine S-me 98.5 4E-07 8.7E-12 83.2 8.3 108 125-237 36-151 (218)
174 COG3963 Phospholipid N-methylt 98.5 1.2E-06 2.7E-11 75.8 10.6 107 126-243 48-158 (194)
175 PF10294 Methyltransf_16: Puta 98.5 6.3E-07 1.4E-11 79.0 8.7 110 125-240 44-155 (173)
176 PRK11727 23S rRNA mA1618 methy 98.5 2.1E-06 4.7E-11 82.7 12.9 84 126-211 114-200 (321)
177 PF05185 PRMT5: PRMT5 arginine 98.5 4.6E-07 9.9E-12 91.2 8.5 108 127-242 187-298 (448)
178 PRK00274 ksgA 16S ribosomal RN 98.5 1.3E-06 2.9E-11 82.4 11.1 73 126-209 42-114 (272)
179 KOG1541 Predicted protein carb 98.5 4.9E-07 1.1E-11 81.5 7.4 125 126-264 50-182 (270)
180 PRK11933 yebU rRNA (cytosine-C 98.4 4.6E-06 1E-10 84.4 15.0 114 125-243 112-244 (470)
181 COG2265 TrmA SAM-dependent met 98.4 3.5E-06 7.7E-11 84.3 13.7 115 111-241 281-396 (432)
182 TIGR00755 ksgA dimethyladenosi 98.4 2.2E-06 4.9E-11 79.8 11.2 72 126-209 29-103 (253)
183 PF09445 Methyltransf_15: RNA 98.4 8.2E-07 1.8E-11 77.4 6.8 80 128-214 1-81 (163)
184 COG0030 KsgA Dimethyladenosine 98.4 2.6E-06 5.7E-11 79.4 10.1 97 127-240 31-130 (259)
185 KOG3191 Predicted N6-DNA-methy 98.4 5.2E-06 1.1E-10 72.8 11.1 123 126-260 43-183 (209)
186 PF05219 DREV: DREV methyltran 98.3 4.4E-06 9.6E-11 77.4 11.1 94 126-241 94-188 (265)
187 COG2520 Predicted methyltransf 98.3 4.8E-05 1E-09 73.7 18.6 175 92-285 158-335 (341)
188 KOG1709 Guanidinoacetate methy 98.3 4.9E-06 1.1E-10 74.9 10.4 119 109-240 87-205 (271)
189 PF03291 Pox_MCEL: mRNA cappin 98.3 1.3E-06 2.7E-11 84.8 6.5 115 126-241 62-186 (331)
190 COG1041 Predicted DNA modifica 98.2 7.1E-06 1.5E-10 79.1 10.6 121 110-241 183-310 (347)
191 TIGR02987 met_A_Alw26 type II 98.2 8.3E-06 1.8E-10 83.9 10.0 129 126-258 31-213 (524)
192 PF01170 UPF0020: Putative RNA 98.2 7.2E-06 1.6E-10 72.7 8.2 110 125-240 27-150 (179)
193 PF01728 FtsJ: FtsJ-like methy 98.1 1.3E-05 2.9E-10 70.6 9.6 132 112-262 9-156 (181)
194 KOG2940 Predicted methyltransf 98.1 3.4E-06 7.4E-11 76.5 5.6 98 127-239 73-172 (325)
195 PF05958 tRNA_U5-meth_tr: tRNA 98.1 4E-05 8.7E-10 75.0 13.6 129 127-278 197-339 (352)
196 KOG1975 mRNA cap methyltransfe 98.1 4.1E-06 8.9E-11 79.4 5.7 116 125-241 116-237 (389)
197 TIGR00478 tly hemolysin TlyA f 98.1 2.3E-05 4.9E-10 72.2 10.4 67 96-165 47-113 (228)
198 PRK01747 mnmC bifunctional tRN 98.1 2.1E-05 4.6E-10 83.1 11.2 113 127-241 58-206 (662)
199 PLN02232 ubiquinone biosynthes 98.1 9.3E-06 2E-10 70.5 7.0 81 154-241 1-81 (160)
200 PF13578 Methyltransf_24: Meth 98.1 2.1E-06 4.6E-11 68.9 2.7 98 131-240 1-104 (106)
201 PRK00050 16S rRNA m(4)C1402 me 98.1 2.2E-05 4.7E-10 74.9 10.0 77 126-208 19-98 (296)
202 KOG3420 Predicted RNA methylas 98.1 7.3E-06 1.6E-10 69.5 5.8 97 126-232 48-144 (185)
203 COG4076 Predicted RNA methylas 98.1 7.8E-06 1.7E-10 72.1 6.2 114 110-241 22-135 (252)
204 PF05430 Methyltransf_30: S-ad 98.1 1.7E-05 3.8E-10 66.1 7.9 93 180-288 31-123 (124)
205 PF02384 N6_Mtase: N-6 DNA Met 98.0 1.1E-05 2.4E-10 77.2 7.5 116 125-242 45-184 (311)
206 KOG2361 Predicted methyltransf 98.0 8E-06 1.7E-10 74.7 5.9 108 126-241 71-183 (264)
207 PF02527 GidB: rRNA small subu 98.0 5.8E-05 1.3E-09 67.2 11.3 100 129-243 51-150 (184)
208 KOG1499 Protein arginine N-met 98.0 1.8E-05 3.9E-10 76.0 7.1 102 126-239 60-165 (346)
209 KOG3178 Hydroxyindole-O-methyl 97.9 1.5E-05 3.2E-10 76.7 6.3 98 127-241 178-275 (342)
210 KOG0820 Ribosomal RNA adenine 97.9 3.9E-05 8.5E-10 71.4 8.3 78 125-211 57-134 (315)
211 PF03059 NAS: Nicotianamine sy 97.9 9.2E-05 2E-09 69.8 10.6 109 126-241 120-230 (276)
212 COG0144 Sun tRNA and rRNA cyto 97.9 0.00026 5.6E-09 69.4 13.9 117 126-246 156-293 (355)
213 PRK11783 rlmL 23S rRNA m(2)G24 97.9 7.4E-05 1.6E-09 79.5 10.5 112 127-241 191-347 (702)
214 PRK10742 putative methyltransf 97.9 0.00011 2.3E-09 68.2 10.1 82 129-213 91-177 (250)
215 PRK04148 hypothetical protein; 97.8 0.00015 3.3E-09 61.1 8.8 67 126-206 16-83 (134)
216 KOG2915 tRNA(1-methyladenosine 97.7 0.00054 1.2E-08 63.9 12.5 120 125-260 104-225 (314)
217 PF12147 Methyltransf_20: Puta 97.7 0.00043 9.4E-09 65.3 11.9 117 125-247 134-254 (311)
218 PF06080 DUF938: Protein of un 97.7 0.00012 2.5E-09 66.1 7.5 110 129-241 28-141 (204)
219 PF00398 RrnaAD: Ribosomal RNA 97.7 0.0001 2.2E-09 69.2 7.1 101 126-241 30-134 (262)
220 COG0293 FtsJ 23S rRNA methylas 97.7 0.00045 9.8E-09 62.3 10.8 120 125-263 44-177 (205)
221 KOG1500 Protein arginine N-met 97.7 0.00016 3.6E-09 69.1 8.3 107 126-242 177-283 (517)
222 PF02005 TRM: N2,N2-dimethylgu 97.6 0.00024 5.1E-09 70.2 8.7 105 127-242 50-155 (377)
223 PF01739 CheR: CheR methyltran 97.6 0.00028 6E-09 63.5 8.3 111 126-240 31-174 (196)
224 PF01861 DUF43: Protein of unk 97.6 0.0008 1.7E-08 62.0 11.1 99 126-235 44-142 (243)
225 COG0357 GidB Predicted S-adeno 97.6 0.0017 3.7E-08 59.1 13.2 98 127-239 68-166 (215)
226 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.6 0.00036 7.9E-09 66.3 9.3 116 126-245 85-223 (283)
227 PF03141 Methyltransf_29: Puta 97.6 0.0006 1.3E-08 68.6 10.8 179 39-243 31-221 (506)
228 PF01269 Fibrillarin: Fibrilla 97.5 0.0011 2.3E-08 60.5 11.4 122 126-263 73-206 (229)
229 PF08123 DOT1: Histone methyla 97.5 0.00025 5.5E-09 64.2 7.4 108 126-239 42-156 (205)
230 KOG2730 Methylase [General fun 97.5 0.00054 1.2E-08 62.1 8.6 83 126-215 94-178 (263)
231 PRK10611 chemotaxis methyltran 97.5 0.00043 9.3E-09 65.9 8.1 110 126-239 115-260 (287)
232 KOG0822 Protein kinase inhibit 97.4 0.00067 1.5E-08 68.3 9.5 112 127-247 368-484 (649)
233 KOG1562 Spermidine synthase [A 97.4 0.00017 3.6E-09 68.0 4.2 187 41-241 94-293 (337)
234 PF04816 DUF633: Family of unk 97.3 0.00085 1.8E-08 60.8 7.9 101 130-241 1-101 (205)
235 COG1867 TRM1 N2,N2-dimethylgua 97.3 0.0014 3.1E-08 63.6 9.7 102 127-241 53-154 (380)
236 PRK11760 putative 23S rRNA C24 97.3 0.0016 3.4E-08 63.2 9.8 87 125-234 210-296 (357)
237 COG0116 Predicted N6-adenine-s 97.3 0.0014 3E-08 64.2 9.6 108 128-241 193-344 (381)
238 PF04989 CmcI: Cephalosporin h 97.3 0.0022 4.7E-08 58.0 9.7 117 108-241 20-147 (206)
239 TIGR00006 S-adenosyl-methyltra 97.1 0.0036 7.7E-08 60.0 9.9 78 126-208 20-100 (305)
240 COG0500 SmtA SAM-dependent met 97.0 0.0067 1.4E-07 48.5 9.9 102 130-242 52-156 (257)
241 COG1352 CheR Methylase of chem 97.0 0.0025 5.4E-08 60.1 8.2 110 126-239 96-239 (268)
242 TIGR01444 fkbM_fam methyltrans 97.0 0.0017 3.6E-08 54.5 6.4 55 130-188 2-56 (143)
243 TIGR03439 methyl_EasF probable 97.0 0.0089 1.9E-07 57.8 12.1 111 126-241 76-197 (319)
244 KOG2187 tRNA uracil-5-methyltr 97.0 0.0029 6.3E-08 63.8 8.9 122 125-262 382-507 (534)
245 PF09243 Rsm22: Mitochondrial 97.0 0.0064 1.4E-07 57.5 10.7 47 126-172 33-80 (274)
246 KOG3115 Methyltransferase-like 97.0 0.003 6.5E-08 56.7 7.6 113 128-241 62-183 (249)
247 PF05148 Methyltransf_8: Hypot 96.9 0.00047 1E-08 62.2 1.9 103 125-259 71-174 (219)
248 PF07942 N2227: N2227-like pro 96.9 0.0031 6.8E-08 59.4 7.5 112 126-244 56-204 (270)
249 COG2384 Predicted SAM-dependen 96.8 0.0077 1.7E-07 54.7 9.1 117 126-256 16-132 (226)
250 COG1063 Tdh Threonine dehydrog 96.8 0.012 2.5E-07 57.6 10.8 99 127-241 169-269 (350)
251 COG1889 NOP1 Fibrillarin-like 96.8 0.017 3.6E-07 52.0 10.6 124 125-261 75-205 (231)
252 KOG3201 Uncharacterized conser 96.8 0.0016 3.5E-08 56.4 4.1 138 113-260 14-156 (201)
253 PF04445 SAM_MT: Putative SAM- 96.7 0.0019 4E-08 59.6 4.3 82 128-212 77-163 (234)
254 KOG3987 Uncharacterized conser 96.6 0.0008 1.7E-08 60.5 1.4 93 125-239 111-205 (288)
255 PRK11524 putative methyltransf 96.6 0.0099 2.2E-07 56.4 8.6 64 178-241 5-80 (284)
256 COG3897 Predicted methyltransf 96.5 0.0045 9.7E-08 55.3 5.1 97 126-239 79-176 (218)
257 PF01795 Methyltransf_5: MraW 96.5 0.0093 2E-07 57.2 7.6 88 113-208 10-101 (310)
258 cd00315 Cyt_C5_DNA_methylase C 96.4 0.095 2.1E-06 49.5 14.2 148 129-290 2-165 (275)
259 COG1189 Predicted rRNA methyla 96.4 0.023 5E-07 52.3 9.5 108 113-239 68-176 (245)
260 KOG4589 Cell division protein 96.3 0.1 2.2E-06 46.5 12.7 140 126-289 69-226 (232)
261 PF13679 Methyltransf_32: Meth 96.3 0.01 2.2E-07 50.3 6.4 76 125-205 24-104 (141)
262 COG0275 Predicted S-adenosylme 96.3 0.023 5.1E-07 54.0 9.3 78 126-208 23-104 (314)
263 KOG3045 Predicted RNA methylas 96.3 0.009 1.9E-07 55.6 6.0 85 125-240 179-263 (325)
264 PF05971 Methyltransf_10: Prot 96.3 0.039 8.5E-07 52.7 10.5 82 127-211 103-188 (299)
265 COG1064 AdhP Zn-dependent alco 96.2 0.031 6.8E-07 54.3 9.8 93 126-241 166-259 (339)
266 PF04672 Methyltransf_19: S-ad 96.2 0.036 7.9E-07 52.0 9.8 108 126-241 68-190 (267)
267 PRK09880 L-idonate 5-dehydroge 96.2 0.034 7.4E-07 53.7 9.9 97 126-241 169-266 (343)
268 PF06962 rRNA_methylase: Putat 96.2 0.011 2.4E-07 50.2 5.6 87 152-241 1-92 (140)
269 KOG2352 Predicted spermine/spe 96.1 0.028 6.1E-07 56.6 9.1 105 129-241 51-161 (482)
270 PF07091 FmrO: Ribosomal RNA m 96.1 0.013 2.9E-07 54.3 6.1 74 125-206 104-177 (251)
271 PRK09424 pntA NAD(P) transhydr 96.1 0.052 1.1E-06 55.7 11.1 109 126-241 164-285 (509)
272 PRK13699 putative methylase; P 96.0 0.011 2.3E-07 54.5 5.3 59 182-240 2-71 (227)
273 KOG2198 tRNA cytosine-5-methyl 96.0 0.046 9.9E-07 53.3 9.5 134 125-262 154-319 (375)
274 KOG0024 Sorbitol dehydrogenase 95.9 0.04 8.8E-07 52.9 8.8 101 126-239 169-271 (354)
275 KOG1253 tRNA methyltransferase 95.8 0.011 2.3E-07 59.6 4.7 107 125-242 108-217 (525)
276 KOG1122 tRNA and rRNA cytosine 95.6 0.059 1.3E-06 53.4 8.7 131 126-262 241-390 (460)
277 PF11599 AviRa: RRNA methyltra 95.6 0.11 2.5E-06 47.1 9.7 126 111-239 39-212 (246)
278 KOG1099 SAM-dependent methyltr 95.5 0.11 2.5E-06 47.6 9.6 148 126-296 41-212 (294)
279 PTZ00357 methyltransferase; Pr 95.5 0.065 1.4E-06 56.1 8.8 106 129-236 703-830 (1072)
280 COG5459 Predicted rRNA methyla 95.3 0.015 3.3E-07 56.2 3.6 111 126-241 113-225 (484)
281 KOG1596 Fibrillarin and relate 95.3 0.11 2.4E-06 48.0 8.9 123 126-264 156-290 (317)
282 PRK05562 precorrin-2 dehydroge 95.3 0.07 1.5E-06 49.0 7.6 106 109-241 7-116 (223)
283 PF04378 RsmJ: Ribosomal RNA s 95.3 0.38 8.3E-06 44.8 12.5 117 131-261 62-182 (245)
284 cd08281 liver_ADH_like1 Zinc-d 95.2 0.12 2.6E-06 50.5 9.6 99 126-241 191-290 (371)
285 TIGR00518 alaDH alanine dehydr 95.2 0.2 4.4E-06 49.4 11.1 101 126-241 166-267 (370)
286 PRK10309 galactitol-1-phosphat 95.1 0.19 4.2E-06 48.4 10.4 100 126-241 160-260 (347)
287 KOG1269 SAM-dependent methyltr 95.0 0.034 7.5E-07 54.7 4.9 102 127-239 111-213 (364)
288 PF14314 Methyltrans_Mon: Viru 94.9 0.12 2.7E-06 54.3 8.9 162 126-290 322-502 (675)
289 cd08283 FDH_like_1 Glutathione 94.8 0.31 6.7E-06 47.9 11.4 110 125-241 183-306 (386)
290 COG4121 Uncharacterized conser 94.8 0.042 9E-07 51.2 4.8 113 127-241 59-208 (252)
291 TIGR03366 HpnZ_proposed putati 94.8 0.28 6E-06 45.9 10.5 97 126-241 120-218 (280)
292 TIGR00561 pntA NAD(P) transhyd 94.7 0.24 5.2E-06 50.9 10.5 106 126-238 163-281 (511)
293 TIGR01202 bchC 2-desacetyl-2-h 94.7 0.19 4.1E-06 47.9 9.1 87 126-241 144-231 (308)
294 COG0286 HsdM Type I restrictio 94.6 0.17 3.7E-06 51.8 9.1 121 114-239 176-324 (489)
295 TIGR03451 mycoS_dep_FDH mycoth 94.6 0.26 5.6E-06 47.8 10.0 99 126-241 176-276 (358)
296 COG1568 Predicted methyltransf 94.6 0.12 2.5E-06 48.8 7.0 104 126-239 152-258 (354)
297 PF03721 UDPG_MGDP_dh_N: UDP-g 94.5 0.55 1.2E-05 41.7 11.2 137 129-276 2-153 (185)
298 PF02254 TrkA_N: TrkA-N domain 94.5 0.37 8E-06 38.6 9.3 95 130-244 1-99 (116)
299 PF00107 ADH_zinc_N: Zinc-bind 94.4 0.084 1.8E-06 43.2 5.2 88 136-241 1-89 (130)
300 cd08293 PTGR2 Prostaglandin re 94.4 0.31 6.6E-06 46.7 9.9 97 128-241 156-254 (345)
301 cd08239 THR_DH_like L-threonin 94.3 0.45 9.8E-06 45.5 10.9 98 126-241 163-262 (339)
302 PRK09260 3-hydroxybutyryl-CoA 94.3 0.11 2.4E-06 49.2 6.5 103 128-243 2-119 (288)
303 COG1179 Dinucleotide-utilizing 94.2 0.3 6.6E-06 45.2 8.9 130 127-262 30-189 (263)
304 PF07279 DUF1442: Protein of u 94.2 0.83 1.8E-05 41.6 11.6 110 113-239 30-146 (218)
305 PF01210 NAD_Gly3P_dh_N: NAD-d 94.1 0.21 4.6E-06 42.9 7.4 144 129-289 1-153 (157)
306 cd08230 glucose_DH Glucose deh 94.0 0.35 7.5E-06 46.8 9.6 94 126-241 172-269 (355)
307 PF11968 DUF3321: Putative met 94.0 0.1 2.2E-06 47.6 5.2 109 127-258 52-172 (219)
308 COG2961 ComJ Protein involved 93.9 0.93 2E-05 42.2 11.3 118 130-261 92-213 (279)
309 KOG0821 Predicted ribosomal RN 93.8 0.05 1.1E-06 49.7 2.9 60 127-192 51-110 (326)
310 PLN02740 Alcohol dehydrogenase 93.8 0.48 1E-05 46.5 10.2 100 125-241 197-300 (381)
311 PHA01634 hypothetical protein 93.8 0.15 3.3E-06 42.7 5.4 75 126-210 28-102 (156)
312 COG0686 Ald Alanine dehydrogen 93.7 0.47 1E-05 45.6 9.4 99 126-239 167-266 (371)
313 KOG4058 Uncharacterized conser 93.7 0.06 1.3E-06 46.2 3.1 76 113-192 58-134 (199)
314 PF05711 TylF: Macrocin-O-meth 93.6 0.27 5.9E-06 45.8 7.6 109 125-241 73-212 (248)
315 PLN02827 Alcohol dehydrogenase 93.6 0.52 1.1E-05 46.3 10.0 100 125-241 192-295 (378)
316 cd05188 MDR Medium chain reduc 93.6 0.66 1.4E-05 42.0 10.1 99 125-241 133-232 (271)
317 PF03269 DUF268: Caenorhabditi 93.5 0.19 4.1E-06 43.8 5.7 102 127-241 2-111 (177)
318 KOG1501 Arginine N-methyltrans 93.5 0.086 1.9E-06 52.5 4.1 56 129-188 69-124 (636)
319 PF01234 NNMT_PNMT_TEMT: NNMT/ 93.4 0.035 7.7E-07 52.0 1.4 113 126-241 56-199 (256)
320 cd08285 NADP_ADH NADP(H)-depen 93.4 0.67 1.5E-05 44.6 10.3 99 125-240 165-265 (351)
321 PF12692 Methyltransf_17: S-ad 93.3 0.083 1.8E-06 45.2 3.3 114 115-239 17-132 (160)
322 PF10354 DUF2431: Domain of un 93.3 0.35 7.6E-06 42.3 7.4 106 131-240 1-124 (166)
323 PRK03562 glutathione-regulated 93.3 0.67 1.5E-05 48.9 10.8 98 127-243 400-500 (621)
324 PF00145 DNA_methylase: C-5 cy 93.2 1.9 4.2E-05 40.7 13.1 146 129-290 2-164 (335)
325 cd08254 hydroxyacyl_CoA_DH 6-h 92.9 0.69 1.5E-05 43.8 9.4 99 125-241 164-263 (338)
326 PF01262 AlaDh_PNT_C: Alanine 92.8 0.18 3.9E-06 43.9 4.8 105 126-238 19-136 (168)
327 PRK07066 3-hydroxybutyryl-CoA 92.7 0.49 1.1E-05 45.8 8.1 103 127-242 7-120 (321)
328 PF01555 N6_N4_Mtase: DNA meth 92.6 0.2 4.4E-06 44.6 5.1 52 115-168 180-231 (231)
329 cd08237 ribitol-5-phosphate_DH 92.6 0.93 2E-05 43.7 10.1 92 126-241 163-256 (341)
330 COG0604 Qor NADPH:quinone redu 92.6 0.7 1.5E-05 44.8 9.1 97 126-241 142-241 (326)
331 PRK05808 3-hydroxybutyryl-CoA 92.6 0.29 6.3E-06 46.1 6.3 102 128-243 4-120 (282)
332 PRK10637 cysG siroheme synthas 92.6 0.46 9.9E-06 48.3 8.1 77 117-210 2-82 (457)
333 TIGR01470 cysG_Nterm siroheme 92.4 0.99 2.2E-05 40.8 9.3 90 125-241 7-100 (205)
334 cd08238 sorbose_phosphate_red 92.3 1.4 3E-05 43.8 11.1 103 127-240 176-287 (410)
335 cd08294 leukotriene_B4_DH_like 92.3 1.1 2.3E-05 42.4 10.0 97 126-241 143-241 (329)
336 PF02737 3HCDH_N: 3-hydroxyacy 92.2 0.46 9.9E-06 42.0 6.7 101 129-243 1-116 (180)
337 PRK06130 3-hydroxybutyryl-CoA 92.2 0.68 1.5E-05 44.2 8.4 103 128-243 5-117 (311)
338 TIGR02825 B4_12hDH leukotriene 92.1 1.4 3E-05 41.9 10.4 98 125-241 137-237 (325)
339 PRK08293 3-hydroxybutyryl-CoA 92.0 0.72 1.6E-05 43.6 8.3 103 128-243 4-122 (287)
340 PRK03659 glutathione-regulated 92.0 1.2 2.5E-05 47.0 10.5 98 128-244 401-501 (601)
341 KOG1331 Predicted methyltransf 92.0 0.088 1.9E-06 49.7 1.9 98 127-241 46-143 (293)
342 PLN03154 putative allyl alcoho 91.9 1.2 2.6E-05 43.1 10.0 99 125-241 157-258 (348)
343 cd08233 butanediol_DH_like (2R 91.9 1.8 3.8E-05 41.6 11.0 100 125-241 171-272 (351)
344 PLN02545 3-hydroxybutyryl-CoA 91.7 0.6 1.3E-05 44.3 7.4 104 127-244 4-122 (295)
345 PF06460 NSP13: Coronavirus NS 91.7 1.3 2.8E-05 41.5 9.1 114 110-242 43-170 (299)
346 COG0270 Dcm Site-specific DNA 91.7 2.4 5.3E-05 41.0 11.7 123 127-261 3-138 (328)
347 cd05285 sorbitol_DH Sorbitol d 91.7 1.7 3.8E-05 41.5 10.7 100 125-241 161-265 (343)
348 cd08300 alcohol_DH_class_III c 91.6 1.7 3.7E-05 42.3 10.7 100 125-241 185-288 (368)
349 PRK06035 3-hydroxyacyl-CoA deh 91.6 0.75 1.6E-05 43.6 7.9 100 128-241 4-121 (291)
350 PRK11524 putative methyltransf 91.6 0.34 7.3E-06 45.9 5.5 57 114-172 196-252 (284)
351 TIGR03201 dearomat_had 6-hydro 91.5 1.5 3.2E-05 42.3 10.1 100 125-241 165-272 (349)
352 cd00401 AdoHcyase S-adenosyl-L 91.5 1.8 3.8E-05 43.5 10.7 87 126-241 201-289 (413)
353 PRK07530 3-hydroxybutyryl-CoA 91.5 0.59 1.3E-05 44.3 7.0 103 128-244 5-122 (292)
354 TIGR02356 adenyl_thiF thiazole 91.5 0.59 1.3E-05 42.0 6.7 34 126-159 20-54 (202)
355 cd05278 FDH_like Formaldehyde 91.4 1.7 3.7E-05 41.4 10.3 98 126-240 167-266 (347)
356 cd08232 idonate-5-DH L-idonate 91.4 1.2 2.6E-05 42.5 9.2 97 126-241 165-262 (339)
357 TIGR02818 adh_III_F_hyde S-(hy 91.4 1.5 3.3E-05 42.7 10.1 99 126-241 185-287 (368)
358 PLN02353 probable UDP-glucose 91.3 2.3 5E-05 43.4 11.5 138 129-276 3-158 (473)
359 PRK07819 3-hydroxybutyryl-CoA 91.3 0.62 1.3E-05 44.2 7.0 102 128-243 6-123 (286)
360 PF10237 N6-adenineMlase: Prob 91.3 2.7 5.8E-05 36.7 10.3 94 126-240 25-122 (162)
361 PF02826 2-Hacid_dh_C: D-isome 91.2 6.9 0.00015 34.2 13.1 108 126-260 35-143 (178)
362 COG4798 Predicted methyltransf 91.2 0.38 8.3E-06 43.2 4.9 114 124-241 46-166 (238)
363 PRK15116 sulfur acceptor prote 91.0 0.86 1.9E-05 43.0 7.5 35 126-160 29-64 (268)
364 PRK07502 cyclohexadienyl dehyd 91.0 1.4 3E-05 42.1 9.1 90 128-239 7-98 (307)
365 PRK12475 thiamine/molybdopteri 90.9 0.75 1.6E-05 44.9 7.2 35 126-160 23-58 (338)
366 cd08295 double_bond_reductase_ 90.8 2.3 4.9E-05 40.7 10.5 99 125-241 150-251 (338)
367 KOG2798 Putative trehalase [Ca 90.8 0.55 1.2E-05 45.1 6.0 106 127-239 151-294 (369)
368 cd08277 liver_alcohol_DH_like 90.8 2.3 5E-05 41.3 10.6 100 125-241 183-286 (365)
369 PF03141 Methyltransf_29: Puta 90.7 1.6 3.4E-05 44.5 9.3 105 124-241 363-467 (506)
370 PRK11064 wecC UDP-N-acetyl-D-m 90.7 2.6 5.5E-05 42.3 11.0 113 128-253 4-131 (415)
371 PRK10669 putative cation:proto 90.4 2.3 5E-05 44.2 10.8 96 128-243 418-517 (558)
372 PRK08268 3-hydroxy-acyl-CoA de 90.3 1 2.3E-05 46.3 8.0 105 126-244 6-125 (507)
373 PRK06719 precorrin-2 dehydroge 90.2 1.1 2.4E-05 38.7 7.0 78 115-210 1-80 (157)
374 cd00755 YgdL_like Family of ac 90.2 0.79 1.7E-05 42.3 6.4 34 127-160 11-45 (231)
375 cd08278 benzyl_alcohol_DH Benz 90.1 2.5 5.5E-05 41.0 10.3 99 126-241 186-285 (365)
376 cd08301 alcohol_DH_plants Plan 90.1 2.5 5.4E-05 41.1 10.2 100 125-241 186-289 (369)
377 cd05279 Zn_ADH1 Liver alcohol 90.1 2.8 6E-05 40.8 10.5 99 126-241 183-285 (365)
378 PF01408 GFO_IDH_MocA: Oxidore 90.1 4.6 0.0001 32.2 10.2 107 129-261 2-112 (120)
379 TIGR00936 ahcY adenosylhomocys 89.7 13 0.00028 37.2 15.0 87 126-241 194-282 (406)
380 COG1748 LYS9 Saccharopine dehy 89.7 1.7 3.8E-05 43.1 8.7 138 128-277 2-159 (389)
381 KOG2793 Putative N2,N2-dimethy 89.6 1.2 2.7E-05 41.5 7.1 106 126-239 86-197 (248)
382 cd08286 FDH_like_ADH2 formalde 89.6 3.6 7.8E-05 39.3 10.8 100 125-241 165-266 (345)
383 PTZ00117 malate dehydrogenase; 89.4 5.8 0.00013 38.3 12.0 107 126-241 4-122 (319)
384 PRK05597 molybdopterin biosynt 89.3 1.4 3E-05 43.3 7.7 35 126-160 27-62 (355)
385 PF02636 Methyltransf_28: Puta 89.2 0.33 7.2E-06 45.1 3.1 46 127-172 19-72 (252)
386 cd08234 threonine_DH_like L-th 89.1 2.7 5.9E-05 39.8 9.5 95 126-240 159-256 (334)
387 PRK05476 S-adenosyl-L-homocyst 88.9 8 0.00017 39.0 12.8 86 126-240 211-298 (425)
388 COG1062 AdhC Zn-dependent alco 88.9 3.9 8.5E-05 39.9 10.1 99 127-241 186-285 (366)
389 cd01487 E1_ThiF_like E1_ThiF_l 88.8 1.3 2.9E-05 38.8 6.5 32 129-160 1-33 (174)
390 cd01492 Aos1_SUMO Ubiquitin ac 88.8 1.4 3E-05 39.5 6.7 34 127-160 21-55 (197)
391 TIGR00675 dcm DNA-methyltransf 88.7 1.2 2.5E-05 43.0 6.6 117 130-260 1-130 (315)
392 PRK10083 putative oxidoreducta 88.7 4 8.7E-05 38.8 10.3 99 125-241 159-259 (339)
393 PRK09422 ethanol-active dehydr 88.5 5.5 0.00012 37.8 11.2 99 125-241 161-261 (338)
394 TIGR02822 adh_fam_2 zinc-bindi 88.3 3.3 7.1E-05 39.7 9.5 89 126-241 165-254 (329)
395 COG0569 TrkA K+ transport syst 88.2 3.1 6.8E-05 38.1 8.8 72 128-210 1-76 (225)
396 cd08236 sugar_DH NAD(P)-depend 88.2 7.2 0.00016 37.1 11.8 100 125-241 158-258 (343)
397 cd00757 ThiF_MoeB_HesA_family 88.1 1.3 2.8E-05 40.5 6.2 34 127-160 21-55 (228)
398 PRK09496 trkA potassium transp 88.1 4.7 0.0001 40.3 10.8 74 126-210 230-307 (453)
399 PF13241 NAD_binding_7: Putati 88.0 3.6 7.8E-05 32.7 8.0 87 126-242 6-92 (103)
400 PRK08644 thiamine biosynthesis 87.9 1.7 3.7E-05 39.5 6.8 34 126-159 27-61 (212)
401 PF11899 DUF3419: Protein of u 87.8 0.97 2.1E-05 44.8 5.5 59 180-241 275-334 (380)
402 PTZ00082 L-lactate dehydrogena 87.5 14 0.0003 35.8 13.2 72 127-210 6-84 (321)
403 PRK13699 putative methylase; P 87.4 1.2 2.5E-05 41.0 5.5 47 125-173 162-208 (227)
404 PF06859 Bin3: Bicoid-interact 87.3 0.084 1.8E-06 42.9 -1.9 42 200-241 1-44 (110)
405 TIGR02819 fdhA_non_GSH formald 87.3 6.5 0.00014 38.9 11.1 107 125-241 184-299 (393)
406 TIGR02279 PaaC-3OHAcCoADH 3-hy 87.3 2.2 4.7E-05 44.0 7.9 105 126-244 4-123 (503)
407 PRK00066 ldh L-lactate dehydro 87.2 9.3 0.0002 36.8 11.8 109 125-241 4-122 (315)
408 PRK07688 thiamine/molybdopteri 87.1 1.8 3.8E-05 42.3 6.8 35 126-160 23-58 (339)
409 PRK06223 malate dehydrogenase; 87.0 9.5 0.00021 36.2 11.8 106 128-241 3-119 (307)
410 KOG2078 tRNA modification enzy 86.9 2.6 5.7E-05 42.2 7.7 102 85-195 212-314 (495)
411 cd05288 PGDH Prostaglandin deh 86.8 5.7 0.00012 37.4 10.0 98 126-241 145-244 (329)
412 cd01483 E1_enzyme_family Super 86.6 3.4 7.4E-05 34.5 7.6 42 129-170 1-44 (143)
413 COG1648 CysG Siroheme synthase 86.5 1.2 2.6E-05 40.5 5.0 95 119-240 4-102 (210)
414 cd01491 Ube1_repeat1 Ubiquitin 86.4 3 6.6E-05 39.7 7.8 40 127-168 19-62 (286)
415 cd05213 NAD_bind_Glutamyl_tRNA 86.4 8.1 0.00017 37.1 10.9 95 126-243 177-274 (311)
416 COG0677 WecC UDP-N-acetyl-D-ma 86.4 11 0.00024 37.6 11.7 111 128-249 10-136 (436)
417 cd05290 LDH_3 A subgroup of L- 86.3 11 0.00024 36.2 11.8 106 129-241 1-119 (307)
418 PRK08618 ornithine cyclodeamin 86.2 14 0.00031 35.6 12.6 116 82-210 85-202 (325)
419 PRK08306 dipicolinate synthase 86.1 5.3 0.00012 38.1 9.4 89 126-241 151-241 (296)
420 PLN02586 probable cinnamyl alc 86.0 7.2 0.00016 37.9 10.5 93 126-241 183-278 (360)
421 cd05291 HicDH_like L-2-hydroxy 85.9 8.5 0.00018 36.8 10.8 107 128-241 1-117 (306)
422 KOG1209 1-Acyl dihydroxyaceton 85.8 6.7 0.00014 36.0 9.2 81 125-211 5-92 (289)
423 PF01488 Shikimate_DH: Shikima 85.8 8.2 0.00018 32.2 9.4 73 126-210 11-85 (135)
424 PF03446 NAD_binding_2: NAD bi 85.7 8.9 0.00019 32.9 9.8 116 128-276 2-121 (163)
425 cd01488 Uba3_RUB Ubiquitin act 85.6 2.2 4.8E-05 40.8 6.4 41 129-169 1-43 (291)
426 cd08231 MDR_TM0436_like Hypoth 85.5 7.5 0.00016 37.4 10.3 99 126-241 177-280 (361)
427 TIGR02354 thiF_fam2 thiamine b 85.5 6 0.00013 35.5 8.9 34 126-159 20-54 (200)
428 cd08261 Zn_ADH7 Alcohol dehydr 85.5 6.5 0.00014 37.4 9.8 98 125-240 158-257 (337)
429 cd08284 FDH_like_2 Glutathione 85.1 8.9 0.00019 36.4 10.5 99 125-241 166-266 (344)
430 cd08243 quinone_oxidoreductase 85.0 10 0.00023 35.1 10.8 96 125-241 141-238 (320)
431 PF00106 adh_short: short chai 85.0 8.1 0.00018 32.4 9.2 78 128-211 1-91 (167)
432 TIGR02437 FadB fatty oxidation 85.0 3.1 6.6E-05 44.8 7.9 103 127-243 313-430 (714)
433 PRK08762 molybdopterin biosynt 84.9 2 4.2E-05 42.5 6.0 34 126-159 134-168 (376)
434 PRK10458 DNA cytosine methylas 84.9 4.1 8.9E-05 41.6 8.4 44 127-171 88-131 (467)
435 PF03807 F420_oxidored: NADP o 84.8 3.8 8.3E-05 31.5 6.5 87 129-238 1-91 (96)
436 cd08240 6_hydroxyhexanoate_dh_ 84.8 6.8 0.00015 37.5 9.6 98 126-240 175-273 (350)
437 cd05281 TDH Threonine dehydrog 84.7 9.3 0.0002 36.5 10.5 99 126-241 163-262 (341)
438 PRK05396 tdh L-threonine 3-deh 84.7 8 0.00017 36.8 10.0 99 126-241 163-263 (341)
439 TIGR00497 hsdM type I restrict 84.5 6.3 0.00014 40.5 9.7 110 128-239 219-353 (501)
440 PRK07102 short chain dehydroge 84.3 9.9 0.00022 34.2 10.0 75 128-208 2-84 (243)
441 KOG1098 Putative SAM-dependent 84.2 2.2 4.9E-05 44.5 6.0 102 125-241 43-158 (780)
442 cd08296 CAD_like Cinnamyl alco 84.2 9.5 0.00021 36.3 10.3 96 126-241 163-259 (333)
443 cd08255 2-desacetyl-2-hydroxye 84.1 10 0.00022 34.8 10.2 94 125-241 96-190 (277)
444 COG1565 Uncharacterized conser 84.0 1.7 3.7E-05 42.6 4.9 50 124-173 75-132 (370)
445 cd08287 FDH_like_ADH3 formalde 83.9 15 0.00033 34.9 11.6 100 125-241 167-268 (345)
446 KOG2671 Putative RNA methylase 83.9 0.57 1.2E-05 45.5 1.6 112 125-241 207-354 (421)
447 PLN02702 L-idonate 5-dehydroge 83.9 6.3 0.00014 38.1 9.0 99 126-241 181-285 (364)
448 PRK05600 thiamine biosynthesis 83.9 3.5 7.5E-05 40.8 7.2 34 126-159 40-74 (370)
449 KOG0022 Alcohol dehydrogenase, 83.8 9.3 0.0002 37.0 9.6 100 126-240 192-293 (375)
450 cd01493 APPBP1_RUB Ubiquitin a 83.8 3.6 7.8E-05 41.5 7.3 32 127-160 20-54 (425)
451 PF02719 Polysacc_synt_2: Poly 83.5 2.8 6E-05 40.1 6.1 76 130-209 1-86 (293)
452 PRK15057 UDP-glucose 6-dehydro 83.4 28 0.00061 34.6 13.5 110 129-246 2-122 (388)
453 cd08265 Zn_ADH3 Alcohol dehydr 83.4 12 0.00025 36.7 10.7 100 126-241 203-307 (384)
454 PLN02494 adenosylhomocysteinas 83.3 9.8 0.00021 38.9 10.2 87 126-241 253-341 (477)
455 COG0287 TyrA Prephenate dehydr 83.0 3.7 8.1E-05 39.0 6.8 122 128-278 4-127 (279)
456 PRK09496 trkA potassium transp 83.0 11 0.00024 37.6 10.7 70 129-210 2-75 (453)
457 PRK06949 short chain dehydroge 82.9 21 0.00045 32.3 11.6 78 126-209 8-95 (258)
458 TIGR00692 tdh L-threonine 3-de 82.9 14 0.0003 35.2 10.9 100 125-241 160-261 (340)
459 cd08282 PFDH_like Pseudomonas 82.9 17 0.00038 35.3 11.7 108 125-240 175-284 (375)
460 PRK11730 fadB multifunctional 82.8 4 8.6E-05 43.9 7.7 102 128-243 314-430 (715)
461 PRK06129 3-hydroxyacyl-CoA deh 82.8 4.6 0.0001 38.6 7.4 98 128-238 3-115 (308)
462 PLN02514 cinnamyl-alcohol dehy 82.7 15 0.00032 35.6 11.1 95 126-241 180-275 (357)
463 TIGR00027 mthyl_TIGR00027 meth 82.5 14 0.0003 34.7 10.3 112 127-244 82-200 (260)
464 PRK07340 ornithine cyclodeamin 82.4 18 0.00039 34.6 11.3 113 83-210 84-198 (304)
465 cd05284 arabinose_DH_like D-ar 82.3 11 0.00023 35.8 9.7 96 126-241 167-266 (340)
466 PRK06718 precorrin-2 dehydroge 82.1 9.6 0.00021 34.2 8.8 74 120-210 3-80 (202)
467 TIGR02441 fa_ox_alpha_mit fatt 82.1 2.9 6.3E-05 45.1 6.3 103 127-243 335-452 (737)
468 cd08245 CAD Cinnamyl alcohol d 82.0 15 0.00033 34.5 10.7 95 125-241 161-256 (330)
469 COG1086 Predicted nucleoside-d 81.8 6.5 0.00014 40.8 8.3 81 126-210 249-335 (588)
470 PRK07417 arogenate dehydrogena 81.8 6 0.00013 37.2 7.7 89 129-243 2-92 (279)
471 TIGR01408 Ube1 ubiquitin-activ 81.7 2.7 5.9E-05 46.9 6.0 32 127-160 24-58 (1008)
472 cd05292 LDH_2 A subgroup of L- 81.7 26 0.00057 33.5 12.2 104 129-241 2-116 (308)
473 PRK07523 gluconate 5-dehydroge 81.6 17 0.00038 32.9 10.6 79 126-210 9-97 (255)
474 TIGR01763 MalateDH_bact malate 81.5 21 0.00046 34.1 11.5 105 128-241 2-118 (305)
475 PRK07531 bifunctional 3-hydrox 81.2 6.5 0.00014 40.3 8.3 101 128-241 5-116 (495)
476 PLN02819 lysine-ketoglutarate 81.1 7.9 0.00017 43.3 9.3 108 126-241 568-702 (1042)
477 PRK08300 acetaldehyde dehydrog 80.9 11 0.00024 36.2 9.1 71 127-208 4-78 (302)
478 PRK11154 fadJ multifunctional 80.8 4 8.8E-05 43.8 6.8 104 127-243 309-427 (708)
479 PRK12921 2-dehydropantoate 2-r 80.7 8.9 0.00019 36.1 8.5 93 129-239 2-100 (305)
480 cd01065 NAD_bind_Shikimate_DH 80.5 32 0.00069 28.6 11.7 73 126-212 18-93 (155)
481 PRK12549 shikimate 5-dehydroge 80.5 25 0.00054 33.3 11.4 68 99-168 101-169 (284)
482 cd01485 E1-1_like Ubiquitin ac 80.5 7 0.00015 35.0 7.3 34 127-160 19-53 (198)
483 cd08252 AL_MDR Arginate lyase 80.5 17 0.00037 34.2 10.4 97 127-241 150-248 (336)
484 TIGR03693 ocin_ThiF_like putat 80.4 12 0.00025 39.5 9.6 76 126-212 128-216 (637)
485 PLN02602 lactate dehydrogenase 80.4 16 0.00034 35.9 10.3 106 128-241 38-154 (350)
486 PTZ00075 Adenosylhomocysteinas 80.2 10 0.00022 38.8 9.0 87 126-240 253-340 (476)
487 cd05197 GH4_glycoside_hydrolas 80.2 12 0.00027 37.6 9.7 36 129-165 2-44 (425)
488 TIGR03026 NDP-sugDHase nucleot 80.0 22 0.00047 35.4 11.4 105 129-241 2-120 (411)
489 PRK08213 gluconate 5-dehydroge 79.9 20 0.00043 32.5 10.4 77 127-209 12-98 (259)
490 PRK08945 putative oxoacyl-(acy 79.7 8.3 0.00018 34.8 7.7 78 126-209 11-101 (247)
491 PRK05225 ketol-acid reductoiso 79.5 5 0.00011 40.8 6.5 90 126-240 35-130 (487)
492 cd08297 CAD3 Cinnamyl alcohol 79.5 15 0.00034 34.8 9.9 99 125-241 164-265 (341)
493 PTZ00245 ubiquitin activating 79.5 5.9 0.00013 37.3 6.5 74 127-206 26-115 (287)
494 PRK06141 ornithine cyclodeamin 79.3 45 0.00097 32.0 12.9 113 83-209 84-198 (314)
495 PF11312 DUF3115: Protein of u 79.1 3.8 8.2E-05 39.5 5.3 108 128-240 88-241 (315)
496 KOG1227 Putative methyltransfe 79.0 1.2 2.6E-05 42.6 1.8 96 126-236 194-290 (351)
497 cd08263 Zn_ADH10 Alcohol dehyd 79.0 17 0.00037 35.1 10.1 99 126-241 187-287 (367)
498 PRK13304 L-aspartate dehydroge 79.0 55 0.0012 30.6 13.1 23 313-335 166-188 (265)
499 PRK08339 short chain dehydroge 79.0 32 0.00069 31.6 11.5 78 127-209 8-94 (263)
500 PF00072 Response_reg: Respons 78.9 9.2 0.0002 29.5 6.8 78 153-241 1-78 (112)
No 1
>PLN02366 spermidine synthase
Probab=100.00 E-value=2.2e-64 Score=480.57 Aligned_cols=304 Identities=80% Similarity=1.371 Sum_probs=272.3
Q ss_pred CCCCCCCCcccccCCeeecccCCCCCceeEeecccEEEEeeCCCceEEEEEEcCcceEEEEcCeEeeeccchhHHHHHHH
Q 019187 38 DSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMIT 117 (345)
Q Consensus 38 ~~~~~~~~~~~~~~~w~~e~~~~~~~~~~~~~~~~~l~~~~s~yq~i~v~e~~~~g~~L~lDg~~q~~~~de~~Y~e~l~ 117 (345)
.|++..++...|+++||+|.++.|+|.++.++++++|++++|+||+|.|+++..+|++|+|||.+|++++|++.|||||+
T Consensus 3 ~~~~~~~~~~~~~~~w~~e~~~~~~~~~~~~~v~~~l~~~~s~yQ~i~v~~~~~~g~~L~lDg~~q~~~~de~~Y~e~l~ 82 (308)
T PLN02366 3 APESEAKCHSTVIPGWFSEISPMWPGEAHSLKVEKVLFQGKSDFQDVLVFESATYGKVLVLDGVIQLTERDECAYQEMIT 82 (308)
T ss_pred CCCCCccccchhhhceEeecccCCCCceEEEEEeeEEEeccCCCeeEEEEEcCCCceEEEECCEeeecCccHHHHHHHHH
Confidence 35666788889999999998767899999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCC
Q 019187 118 HLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVP 197 (345)
Q Consensus 118 ~l~l~~~~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~ 197 (345)
|+|++.++++++||+||||+|++++++++++++.+|++||||++|++.|+++|+..+.+++++|++++++|++.|+++.+
T Consensus 83 h~~l~~~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~ 162 (308)
T PLN02366 83 HLPLCSIPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAP 162 (308)
T ss_pred HHHHhhCCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhcc
Confidence 99999999999999999999999999999988899999999999999999999876556789999999999999998754
Q ss_pred CCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEeccchhhhhhHHHHHHHHHHhhcCCcceEEEEEEeecC
Q 019187 198 EGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYP 277 (345)
Q Consensus 198 ~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s~~~~~~~~~~i~~~l~~~F~~~v~~~~~~vP~y~ 277 (345)
+++||+||+|+++|.+++..|++.+||+.++++|+|||++++|++++|.+.+.++.+.++++++|++.+.+++..||+|+
T Consensus 163 ~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F~~~v~~~~~~vPsy~ 242 (308)
T PLN02366 163 EGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETFKGSVNYAWTTVPTYP 242 (308)
T ss_pred CCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHHCCCceeEEEecCCCcC
Confidence 57899999999999988889999999999999999999999999999999999999999999999767888889999999
Q ss_pred CCcEEEEEEecCCCCCCCCCCCCCCCcccccCCCCCCCCcccCHHHHHHHhcCcHHHHHHhhhhc
Q 019187 278 SGVIGFMLCSTEGPPVDFKHPVNPIDADDSNCNSSKGPLKFYNSEIHTAAFCLPTFAKKVIESKN 342 (345)
Q Consensus 278 ~g~w~~~~ask~~~~~~~~~p~~~~~~~~~~~~~~~~~l~yy~~~~h~a~f~lp~~~~~~~~~~~ 342 (345)
+|.|||++||++.+..++.+|.+..+..+. ..+...+|||||+++|.++|+||+|++++|++..
T Consensus 243 ~g~w~f~~as~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~yy~~~~h~~~f~lp~~~~~~l~~~~ 306 (308)
T PLN02366 243 SGVIGFVLCSKEGPAVDFKHPVNPIDKLEG-AGKAKRPLKFYNSEVHRAAFCLPSFAKRELESLL 306 (308)
T ss_pred CCceEEEEEECCCccccccccccccchhhh-hhcccCCCeEECHHHHHHHhcChHHHHHHHHhcc
Confidence 999999999997544455566544332110 0012356999999999999999999999998754
No 2
>PRK00536 speE spermidine synthase; Provisional
Probab=100.00 E-value=3.4e-62 Score=453.81 Aligned_cols=261 Identities=19% Similarity=0.293 Sum_probs=230.4
Q ss_pred CeeecccCCCCCceeEeecccEEEEeeCCCceEEEEEEcCcceEEEEcCeEeeeccchhHHHHHHHhcccccCCCCceEE
Q 019187 52 GWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVL 131 (345)
Q Consensus 52 ~w~~e~~~~~~~~~~~~~~~~~l~~~~s~yq~i~v~e~~~~g~~L~lDg~~q~~~~de~~Y~e~l~~l~l~~~~~~~~VL 131 (345)
.||+|.. +++.++.++++++|++++|+||+|+|+++..|||+|+|| .+|++++||+.|||||+|+||+.|++|+|||
T Consensus 1 ~w~~e~~--~~~~~~~~~v~~~L~~~kS~~Q~i~i~es~~fGr~LvLD-~~~~te~dEfiYHEmLvHppl~~h~~pk~VL 77 (262)
T PRK00536 1 MWITQEI--TPYLRKEYTIEAKLLDVRSEHNILEIFKSKDFGEIAMLN-KQLLFKNFLHIESELLAHMGGCTKKELKEVL 77 (262)
T ss_pred CceEEec--CCCceEEEEEEEEEEccCCCCcEEEEEEccccccEEEEe-eeeeecchhhhHHHHHHHHHHhhCCCCCeEE
Confidence 4999976 589999999999999999999999999999999999999 5567999999999999999999999999999
Q ss_pred EEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEEEcCCCC
Q 019187 132 VIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDP 211 (345)
Q Consensus 132 ~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi~D~~~p 211 (345)
+||||+|+++||++||+ .+|++||||++|+++||+|+|.++++++|||++++. ++.+...++||+||+|+.
T Consensus 78 IiGGGDGg~~REvLkh~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-----~~~~~~~~~fDVIIvDs~-- 148 (262)
T PRK00536 78 IVDGFDLELAHQLFKYD--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-----QLLDLDIKKYDLIICLQE-- 148 (262)
T ss_pred EEcCCchHHHHHHHCcC--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-----hhhhccCCcCCEEEEcCC--
Confidence 99999999999999996 399999999999999999999998889999999997 343332478999999974
Q ss_pred CCCccccCcHHHHHHHHhccCCCcEEEEeccchhhhhhHHHHHHHHHHhhcCCcceEEEEEEeecCCCcEEEEEEecCCC
Q 019187 212 IGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGP 291 (345)
Q Consensus 212 ~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s~~~~~~~~~~i~~~l~~~F~~~v~~~~~~vP~y~~g~w~~~~ask~~~ 291 (345)
++.+||+.|+++|+|||++++|++|++++.+.++.+.++++++| +.+.+|+..+|+| |.|||++||++..
T Consensus 149 -------~~~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F-~~v~~y~~~vp~~--g~wgf~~aS~~~~ 218 (262)
T PRK00536 149 -------PDIHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGDFF-SIAMPFVAPLRIL--SNKGYIYASFKTH 218 (262)
T ss_pred -------CChHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHhhC-CceEEEEecCCCc--chhhhheecCCCC
Confidence 35799999999999999999999999999999999999999999 5688889999998 7999999999743
Q ss_pred CCCCCCCCCCCCcccccCCCCCCCCcccCHHHHHHHhcCcHHHHHHhhhhcc
Q 019187 292 PVDFKHPVNPIDADDSNCNSSKGPLKFYNSEIHTAAFCLPTFAKKVIESKNE 343 (345)
Q Consensus 292 ~~~~~~p~~~~~~~~~~~~~~~~~l~yy~~~~h~a~f~lp~~~~~~~~~~~~ 343 (345)
|..+...++. .....|||||+++|+|+|+||+|++++|++..+
T Consensus 219 ------p~~~~~~~~~---~~~~~lryy~~~~h~a~F~lP~~v~~~l~~~~~ 261 (262)
T PRK00536 219 ------PLKDLMLQKI---EALKSVRYYNEDIHRAAFALPKNLQEVFKDNIK 261 (262)
T ss_pred ------Cccchhhhhh---cccCCceeeCHHHHHHHhcCcHHHHHHHHHhhc
Confidence 3222212221 112348999999999999999999999987653
No 3
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.2e-61 Score=442.03 Aligned_cols=327 Identities=52% Similarity=0.846 Sum_probs=293.6
Q ss_pred CCCCCCCCCccccccccCCCCccccccCCCCCCCCcccccCCeeecccC---CCCCceeEeecccEEEEeeCCCceEEEE
Q 019187 11 DLPLKRPRDDGEKEANNNNNGSVLMEMDSNKQPDCISSVIPGWFSEISP---MWPGEAHSLKVEKILFQGKSDYQNVMVF 87 (345)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~e~~~---~~~~~~~~~~~~~~l~~~~s~yq~i~v~ 87 (345)
.++.+++-++..++ .. +..+ ..........+++.+.+|||.|+.+ +|||++++++++++|+.++|.||++.|+
T Consensus 7 ~l~~~~~~~ad~~~-~~--~~~~-~~~~q~~~~s~h~~i~~GwF~e~~~~~~i~pg~a~tLkVe~vl~~ekS~~qdvlvf 82 (337)
T KOG1562|consen 7 LLDFTLDAKADEEA-LR--NELE-QLFPQLELESSHPSIENGWFAEIHNKKDIWPGQALTLKVEKVLHDEKSDSQDVLVF 82 (337)
T ss_pred eeeeecCCcCCcch-hh--hhHh-hhchhhhhccccCcccCCeEeeecCCCCCCCCceeEEEeeeecccCchhHHHHHHH
Confidence 45556664444443 21 1211 1134456667899999999999986 5899999999999999999999999999
Q ss_pred EEcCcceEEEEcCeEeeeccchhHHHHHHHhcccccCCCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHH
Q 019187 88 QSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSK 167 (345)
Q Consensus 88 e~~~~g~~L~lDg~~q~~~~de~~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar 167 (345)
++..+|++|++||.+|++++||+.|+||++|+|++.|++|++||+||+|+|++.|++.+|+.+++|+.+|||..|++..+
T Consensus 83 ~s~tyg~vlvlDgviqlte~de~~Yqemi~~l~l~s~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk 162 (337)
T KOG1562|consen 83 ESATYGKVLVLDGVIQLTERDEFAYQEMIAHLALCSHPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSK 162 (337)
T ss_pred HHhhhheeeeeCCeeeCCccccccceeeeeccccccCCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEeccchhhh
Q 019187 168 QFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLH 247 (345)
Q Consensus 168 ~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s~~~~ 247 (345)
+|+|.+..++++++|.++.|||..|++..+.+.||+||.|+++|.+++..+|.+.+|+.+.++||+||++++|+++.|++
T Consensus 163 ~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~ 242 (337)
T KOG1562|consen 163 QYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWLH 242 (337)
T ss_pred HHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehHH
Confidence 99999988999999999999999999988789999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhcCCcceEEEEEEeecCCCcEEEEEEecCCCCCCCCCCCCCCCcccccCCCCCCCCcccCHHHHHHH
Q 019187 248 MHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPPVDFKHPVNPIDADDSNCNSSKGPLKFYNSEIHTAA 327 (345)
Q Consensus 248 ~~~~~~i~~~l~~~F~~~v~~~~~~vP~y~~g~w~~~~ask~~~~~~~~~p~~~~~~~~~~~~~~~~~l~yy~~~~h~a~ 327 (345)
.+.+++..+.++.+| +.+.|.|+.+|+||+|..||++|||..+..+|..|.+.+..+.... -...+|+|||.++|+|+
T Consensus 243 ~~~i~e~r~~~~~~f-~~t~ya~ttvPTypsg~igf~l~s~~~~~~~~~~p~n~i~~~e~~~-l~~~~L~yyn~e~h~aa 320 (337)
T KOG1562|consen 243 LDYIKEGRSFCYVIF-DLTAYAITTVPTYPSGRIGFMLCSKLKPDGKYKTPGNPITCKEQLS-LYEEQLLYYNVEFHSAA 320 (337)
T ss_pred HHHHHHHHHhHHHhc-CccceeeecCCCCccceEEEEEecccCCCCCccCCCCccCHHHHHh-hhhhhhccCCchhceee
Confidence 999999999999999 5799999999999999999999998888899999999888654321 12356899999999999
Q ss_pred hcCcHHHHHHhhhhcc
Q 019187 328 FCLPTFAKKVIESKNE 343 (345)
Q Consensus 328 f~lp~~~~~~~~~~~~ 343 (345)
|+||.|+++.+.....
T Consensus 321 f~lPsf~~k~~~~~~~ 336 (337)
T KOG1562|consen 321 FVLPSFAEKWLFYQVT 336 (337)
T ss_pred eechHHHHHHHHHHhc
Confidence 9999999999876543
No 4
>PRK00811 spermidine synthase; Provisional
Probab=100.00 E-value=2.2e-58 Score=436.17 Aligned_cols=281 Identities=42% Similarity=0.781 Sum_probs=249.7
Q ss_pred cCCeeecccCCCCCceeEeecccEEEEeeCCCceEEEEEEcCcceEEEEcCeEeeeccchhHHHHHHHhcccccCCCCce
Q 019187 50 IPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKK 129 (345)
Q Consensus 50 ~~~w~~e~~~~~~~~~~~~~~~~~l~~~~s~yq~i~v~e~~~~g~~L~lDg~~q~~~~de~~Y~e~l~~l~l~~~~~~~~ 129 (345)
+..||+|.. +++.++.++++++|++++|+||+|.|+++..+|++|+|||.+|+++++++.||||++|+|++.++++++
T Consensus 2 ~~~w~~e~~--~~~~~~~~~~~~~l~~~~s~yq~i~v~~~~~~g~~l~lDg~~q~~~~de~~Y~e~l~h~~~~~~~~p~~ 79 (283)
T PRK00811 2 MELWFTETL--TDNYGQSFRVKKVLYEEKSPFQRIEIFETPEFGRLLALDGCVMTTERDEFIYHEMMTHVPLFAHPNPKR 79 (283)
T ss_pred CCcceeecc--CCccceEEeeccEEEEcCCCCeeEEEEEcCCccEEEEECCeeeecCcchhhHHHHhhhHHHhhCCCCCE
Confidence 347999976 589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccC-CCCCCEEEEEechHhHHhhCCCCCccEEEEcC
Q 019187 130 VLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVG-FEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDS 208 (345)
Q Consensus 130 VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~-~~~~rv~v~~~D~~~~l~~~~~~~yDvIi~D~ 208 (345)
||+||||+|++++++++++++.+|++||||++++++|+++|+..+.+ ++++|++++++|+++|++.. .++||+||+|+
T Consensus 80 VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~-~~~yDvIi~D~ 158 (283)
T PRK00811 80 VLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAET-ENSFDVIIVDS 158 (283)
T ss_pred EEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhC-CCcccEEEECC
Confidence 99999999999999999988889999999999999999999876433 47899999999999999864 68999999999
Q ss_pred CCCCCCccccCcHHHHHHHHhccCCCcEEEEeccchhhhhhHHHHHHHHHHhhcCCcceEEEEEEeecCCCcEEEEEEec
Q 019187 209 SDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCST 288 (345)
Q Consensus 209 ~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s~~~~~~~~~~i~~~l~~~F~~~v~~~~~~vP~y~~g~w~~~~ask 288 (345)
++|.+++..|++.+||+.|+++|+|||++++|.++++.+.+.+..+.++++++| +.+.++...+|+||+|.|+|++||+
T Consensus 159 ~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F-~~v~~~~~~vp~~~~~~w~f~~as~ 237 (283)
T PRK00811 159 TDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVF-PIVRPYQAAIPTYPSGLWSFTFASK 237 (283)
T ss_pred CCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHC-CCEEEEEeECCcccCchheeEEeec
Confidence 999988888999999999999999999999999999888889999999999999 5688888999999999999999998
Q ss_pred CCCCCCCCCCCCCCCcccccCCCCCCCCcccCHHHHHHHhcCcHHHHHHhh
Q 019187 289 EGPPVDFKHPVNPIDADDSNCNSSKGPLKFYNSEIHTAAFCLPTFAKKVIE 339 (345)
Q Consensus 289 ~~~~~~~~~p~~~~~~~~~~~~~~~~~l~yy~~~~h~a~f~lp~~~~~~~~ 339 (345)
..++.. +|.+.+..+.. ....+|||||+++|+|+|+||+|+|++|+
T Consensus 238 ~~~~~~--~~~~~~~~~~~---~~~~~~~yy~~~~h~~~f~lp~~~~~~~~ 283 (283)
T PRK00811 238 NDDLKF--LPLDVIEARFA---ERGIKTRYYNPELHKAAFALPQFVKDALK 283 (283)
T ss_pred Cccccc--CccccchhhHh---hccCCCeEECHHHHHHHhcCcHHHHHhhC
Confidence 643321 23322222211 11236999999999999999999999874
No 5
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.1e-58 Score=430.36 Aligned_cols=280 Identities=44% Similarity=0.803 Sum_probs=253.6
Q ss_pred cCCeeecccCCCCCceeEeecccEEEEeeCCCceEEEEEEcCcceEEEEcCeEeeeccchhHHHHHHHhcccccCCCCce
Q 019187 50 IPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKK 129 (345)
Q Consensus 50 ~~~w~~e~~~~~~~~~~~~~~~~~l~~~~s~yq~i~v~e~~~~g~~L~lDg~~q~~~~de~~Y~e~l~~l~l~~~~~~~~ 129 (345)
++.||.|..+ |+.++.+++++++++++|+||+|.++++..+|++|++||..|++++|++.||||++|+|++.|++|++
T Consensus 2 ~~~w~~e~~~--~~~~~~~~v~~~l~~~ks~~q~i~i~~~~~~g~~l~ldg~~q~~e~de~~yhEml~h~~~~ah~~pk~ 79 (282)
T COG0421 2 ADMWFTELYD--PGLRLMFRVERVLYEEKSEYQDIEIFESEDFGKVLVLDGVVQLTERDEFIYHEMLAHVPLLAHPNPKR 79 (282)
T ss_pred Cccceeeeec--ccccceeEeeeeeeeccCCceEEEEEeccccceEEEecChhhhccchhHHHHHHHHhchhhhCCCCCe
Confidence 5689999985 78899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEEEcCC
Q 019187 130 VLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSS 209 (345)
Q Consensus 130 VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi~D~~ 209 (345)
||+||+|+|+++|++++|.+++++++||||++|+++||++|+.++.+..|||++++++||.+|+++. .++||+||+|++
T Consensus 80 VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~-~~~fDvIi~D~t 158 (282)
T COG0421 80 VLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC-EEKFDVIIVDST 158 (282)
T ss_pred EEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC-CCcCCEEEEcCC
Confidence 9999999999999999999999999999999999999999999876655999999999999999987 559999999999
Q ss_pred CCCCCccccCcHHHHHHHHhccCCCcEEEEeccchhhhhhHHHHHHHHHHhhcCCcceEEEEEEeecCCCcEEEEEEecC
Q 019187 210 DPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTE 289 (345)
Q Consensus 210 ~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s~~~~~~~~~~i~~~l~~~F~~~v~~~~~~vP~y~~g~w~~~~ask~ 289 (345)
+|.+++..||+.+||+.|+++|+++|++++|++++|++.+.+....+.++++| +.+.++...+|+|++|.|+|+++|++
T Consensus 159 dp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~vf-~~~~~~~~~ipt~~~g~~~f~~~s~~ 237 (282)
T COG0421 159 DPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSRVF-SIVPPYVAPIPTYPSGFWGFIVASFN 237 (282)
T ss_pred CCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhhc-cccccceeccceecCCceEEEEeecC
Confidence 99999999999999999999999999999999999999999999999999999 56788889999999999999999955
Q ss_pred CCCCCCCCCCCCCCcccccCCCCCCCCcccCHHHHHHHhcCcHHHHHHhh
Q 019187 290 GPPVDFKHPVNPIDADDSNCNSSKGPLKFYNSEIHTAAFCLPTFAKKVIE 339 (345)
Q Consensus 290 ~~~~~~~~p~~~~~~~~~~~~~~~~~l~yy~~~~h~a~f~lp~~~~~~~~ 339 (345)
. .+++.+.+..+... .....|+|||+++|.++|+||+|+++.++
T Consensus 238 ~-----~~~~~~~~~~~~~~-~~~~~~~yy~~~~h~~~f~lp~~~~~~~~ 281 (282)
T COG0421 238 K-----AHPLKSLDALQARA-LALLTLKYYNEDIHDAAFALPKNLQDELK 281 (282)
T ss_pred C-----CCcccchhHHHHHH-hhhhhhccCcHHHhhhhhcCCcchhhhcc
Confidence 3 13344333322211 12245699999999999999999999875
No 6
>PLN02823 spermine synthase
Probab=100.00 E-value=1.7e-55 Score=423.65 Aligned_cols=282 Identities=33% Similarity=0.576 Sum_probs=244.3
Q ss_pred cCCeeecccCCCCCceeEeecccEEEEeeCCCceEEEEEEcCcceEEEEcCeEeeeccchhHHHHHHHhcccccCCCCce
Q 019187 50 IPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKK 129 (345)
Q Consensus 50 ~~~w~~e~~~~~~~~~~~~~~~~~l~~~~s~yq~i~v~e~~~~g~~L~lDg~~q~~~~de~~Y~e~l~~l~l~~~~~~~~ 129 (345)
.+.||+|.. +++.++.++++++|++++|+||+|+|+++..+|++|+|||.+|+++.|++.|||+|+|++++.+++|++
T Consensus 29 ~~~w~~e~~--~~~~~~~~~~~~vl~~~~S~yQ~I~V~~~~~~g~~L~lDg~~qs~~~de~~YhE~l~h~~l~~~~~pk~ 106 (336)
T PLN02823 29 KSLWYEEEI--EDDLRWSYAVNSVLHTGTSEFQDIALVDTKPFGKVLIIDGKMQSAEADEFVYHESLVHPALLHHPNPKT 106 (336)
T ss_pred cCeeEeecc--CCCcceEEEeccEEEeccCCCeEEEEEECCCCceEEEECCccccccchHHHHHHHHHhHHHhhCCCCCE
Confidence 457999976 478999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEEEcCC
Q 019187 130 VLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSS 209 (345)
Q Consensus 130 VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi~D~~ 209 (345)
||+||+|+|+++++++++++..+|++||||++++++|+++|+.....+.++|++++++|++.|++.. +++||+|++|++
T Consensus 107 VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~-~~~yDvIi~D~~ 185 (336)
T PLN02823 107 VFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR-DEKFDVIIGDLA 185 (336)
T ss_pred EEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC-CCCccEEEecCC
Confidence 9999999999999999998889999999999999999999987655678999999999999999865 688999999999
Q ss_pred CCC--CCccccCcHHHHH-HHHhccCCCcEEEEeccch--hhhhhHHHHHHHHHHhhcCCcceEEEEEEeecCCCcEEEE
Q 019187 210 DPI--GPAQELFEKPFFE-SVAKALRPGGVVSTQAESI--WLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFM 284 (345)
Q Consensus 210 ~p~--~~~~~l~t~ef~~-~v~r~LkpgGvlv~~~~s~--~~~~~~~~~i~~~l~~~F~~~v~~~~~~vP~y~~g~w~~~ 284 (345)
+|. +++..||+.+||+ .|+++|+|||++++|++++ +.+.+.++.++++++++| +.+..|...+|+|++ .|||+
T Consensus 186 dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~vF-~~v~~y~~~vPsf~~-~w~f~ 263 (336)
T PLN02823 186 DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQVF-KYVVPYTAHVPSFAD-TWGWV 263 (336)
T ss_pred CccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHhC-CCEEEEEeecCCCCC-ceEEE
Confidence 886 4567899999999 9999999999999998774 445778899999999999 568888899999975 59999
Q ss_pred EEecCCCCCCCCCCCCCCCcccccCCCCCCCCcccCHHHHHHHhcCcHHHHHHhhhh
Q 019187 285 LCSTEGPPVDFKHPVNPIDADDSNCNSSKGPLKFYNSEIHTAAFCLPTFAKKVIESK 341 (345)
Q Consensus 285 ~ask~~~~~~~~~p~~~~~~~~~~~~~~~~~l~yy~~~~h~a~f~lp~~~~~~~~~~ 341 (345)
+||+.. +.++. + ..++.+.. ++...+|||||+++|.++|+||+++++.|..+
T Consensus 264 ~aS~~~-~~~~~-~-~~~~~~~~--~~~~~~lryy~~~~h~a~F~lP~~~~~~l~~~ 315 (336)
T PLN02823 264 MASDHP-FADLS-A-EELDSRIK--ERIDGELKYLDGETFSSAFALNKTVRQALANE 315 (336)
T ss_pred EEeCCc-cccCC-h-hHHHHhhh--hcccCCCeEECHHHHHHHccCcHHHHHhhcCC
Confidence 999863 22221 1 11211111 01234689999999999999999999988653
No 7
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=100.00 E-value=6.5e-53 Score=396.49 Aligned_cols=270 Identities=46% Similarity=0.845 Sum_probs=240.1
Q ss_pred eeecccCCCCCceeEeecccEEEEeeCCCceEEEEEEcCcceEEEEcCeEeeeccchhHHHHHHHhcccccCCCCceEEE
Q 019187 53 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLV 132 (345)
Q Consensus 53 w~~e~~~~~~~~~~~~~~~~~l~~~~s~yq~i~v~e~~~~g~~L~lDg~~q~~~~de~~Y~e~l~~l~l~~~~~~~~VL~ 132 (345)
||+|.. +||.++.++++++|++++|+||+|.|+++..+|++|+|||.+|+++.+++.||||++|++++.+++|++||+
T Consensus 1 w~~~~~--~~~~~~~~~~~~~l~~~~s~~q~i~v~~~~~~g~~l~ldg~~q~~~~~e~~y~e~l~~~~l~~~~~p~~VL~ 78 (270)
T TIGR00417 1 WFTEYH--DKNFGLTMKVKKVLYHEKSEFQDLEIFETEEFGNVLVLDGVVQTTERDEFIYHEMIAHVPLFTHPNPKHVLV 78 (270)
T ss_pred Cceeec--CCCceEEEEeeeEEEEccCCCeeEEEEEcCCCceEEEECCcccccCchHHHHHHHhhhhHhhcCCCCCEEEE
Confidence 899976 689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEEEcCCCCC
Q 019187 133 IGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPI 212 (345)
Q Consensus 133 IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi~D~~~p~ 212 (345)
||||+|+++++++++++..++++||+|+++++.|+++++.....+++++++++.+|++++++.. .++||+||+|.++|.
T Consensus 79 iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~-~~~yDvIi~D~~~~~ 157 (270)
T TIGR00417 79 IGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT-ENTFDVIIVDSTDPV 157 (270)
T ss_pred EcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC-CCCccEEEEeCCCCC
Confidence 9999999999999997778999999999999999999987654567899999999999999876 689999999999988
Q ss_pred CCccccCcHHHHHHHHhccCCCcEEEEeccchhhhhhHHHHHHHHHHhhcCCcceEEEEEEeecCCCcEEEEEEecCCCC
Q 019187 213 GPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPP 292 (345)
Q Consensus 213 ~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s~~~~~~~~~~i~~~l~~~F~~~v~~~~~~vP~y~~g~w~~~~ask~~~~ 292 (345)
++...|++.+||+.++++|+|||++++++++++.....+..+.++++++| +.+.++.+.+|+|++|.|+|++||+..
T Consensus 158 ~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~F-~~v~~~~~~vp~~~~g~~~~~~as~~~-- 234 (270)
T TIGR00417 158 GPAETLFTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEAF-PITEYYTANIPTYPSGLWTFTIGSKNK-- 234 (270)
T ss_pred CcccchhHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHHC-CCeEEEEEEcCccccchhEEEEEECCC--
Confidence 88888999999999999999999999999999998899999999999999 568888899999999999999999831
Q ss_pred CCCCCCCCCCCcccccCCCCCCCCcccCHHHHHHHhcCcHH
Q 019187 293 VDFKHPVNPIDADDSNCNSSKGPLKFYNSEIHTAAFCLPTF 333 (345)
Q Consensus 293 ~~~~~p~~~~~~~~~~~~~~~~~l~yy~~~~h~a~f~lp~~ 333 (345)
.+|+.+...+.. +....++||||+++|.++|+||+|
T Consensus 235 ---~~~~~~~~~~~~--~~~~~~~~~y~~~~h~~~f~lp~~ 270 (270)
T TIGR00417 235 ---YDPLEVEDRRIS--EFEDGKTKYYNPDIHKAAFVLPKW 270 (270)
T ss_pred ---CCCCCcchhhhh--hcccCCCeEECHHHHHHhcCCCCC
Confidence 123221111110 012345899999999999999986
No 8
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=100.00 E-value=6.9e-52 Score=384.15 Aligned_cols=242 Identities=44% Similarity=0.790 Sum_probs=222.7
Q ss_pred CeeecccC-CCCCceeEeecccEEEEeeCCCceEEEEEEcCcceEEEEcCeEeeeccchhHHHHHHHhcccccCCCCceE
Q 019187 52 GWFSEISP-MWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKV 130 (345)
Q Consensus 52 ~w~~e~~~-~~~~~~~~~~~~~~l~~~~s~yq~i~v~e~~~~g~~L~lDg~~q~~~~de~~Y~e~l~~l~l~~~~~~~~V 130 (345)
+||+|..+ .+|+.++.|+++++|++++|+||+|.|++++.+|++|+|||.+|++++|++.|||||+|+|++.+++|++|
T Consensus 1 ~w~~e~~~~~~~~~~~~~~v~~vl~~~~s~yQ~i~i~~~~~~G~~l~ldg~~q~~e~de~~y~e~l~h~~~~~~~~p~~V 80 (246)
T PF01564_consen 1 MWFTEYYSQFDPGLGVSYRVEEVLYEEKSPYQHIEIFESSPFGRILVLDGDVQLSERDEFIYHEMLVHPPLLLHPNPKRV 80 (246)
T ss_dssp TEEEEEET-TSTTEEEEEEEEEEEEEEEESSSEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSST-EE
T ss_pred CeEEEEeccCCCCceEEEEEEEEEEccCCCCCcEEEEEecCcCcEEEECCeEEEEEechHHHHHHHhhhHhhcCCCcCce
Confidence 59999874 56999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEEEcCCC
Q 019187 131 LVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSD 210 (345)
Q Consensus 131 L~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi~D~~~ 210 (345)
|+||+|+|+++++++++++.++|++||||+.|+++|+++|+....+++++|++++++||+.|+++..+++||+||+|+++
T Consensus 81 LiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~D~~d 160 (246)
T PF01564_consen 81 LIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVIIVDLTD 160 (246)
T ss_dssp EEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEEEESSS
T ss_pred EEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEEEeCCC
Confidence 99999999999999999888999999999999999999999876667899999999999999998733399999999999
Q ss_pred CCCCccccCcHHHHHHHHhccCCCcEEEEeccchhhhhhHHHHHHHHHHhhcCCcceEEEEEEeecCCCcEEEEEEecCC
Q 019187 211 PIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEG 290 (345)
Q Consensus 211 p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s~~~~~~~~~~i~~~l~~~F~~~v~~~~~~vP~y~~g~w~~~~ask~~ 290 (345)
|.+++..||+.+||+.|+++|+|||++++|+++++.+...++.+.++++++| +.+.+++..+|+|+++.|+|++||+..
T Consensus 161 p~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F-~~v~~~~~~vP~~~~~~~~~~~~s~~~ 239 (246)
T PF01564_consen 161 PDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVF-PQVKPYTAYVPSYGSGWWSFASASKDI 239 (246)
T ss_dssp TTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTS-SEEEEEEEECTTSCSSEEEEEEEESST
T ss_pred CCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhC-CceEEEEEEcCeecccceeEEEEeCCC
Confidence 9998888999999999999999999999999999999999999999999999 578899999999999889999999985
Q ss_pred CCCC
Q 019187 291 PPVD 294 (345)
Q Consensus 291 ~~~~ 294 (345)
+.++
T Consensus 240 ~~~~ 243 (246)
T PF01564_consen 240 NLVD 243 (246)
T ss_dssp TT--
T ss_pred Cccc
Confidence 4433
No 9
>PRK03612 spermidine synthase; Provisional
Probab=100.00 E-value=3.2e-45 Score=372.55 Aligned_cols=255 Identities=27% Similarity=0.516 Sum_probs=223.0
Q ss_pred ceeEeecccEEEEeeCCCceEEEEEEcC-cc--eEEEEcCeEeeeccchhHHHHHHHhcccccCCCCceEEEEeccchHH
Q 019187 64 EAHSLKVEKILFQGKSDYQNVMVFQSST-YG--KVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGV 140 (345)
Q Consensus 64 ~~~~~~~~~~l~~~~s~yq~i~v~e~~~-~g--~~L~lDg~~q~~~~de~~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~ 140 (345)
..+.+..++++++++|+||+|.|++++. +| +.|++||.+|+++.|++.|||+++|++++.|+++++||+||||+|.+
T Consensus 232 ~~~~~~~~~v~~~~~s~yq~i~v~~~~~~~~~~~~L~ldG~~q~s~~de~~y~e~l~~~~l~~~~~~~rVL~IG~G~G~~ 311 (521)
T PRK03612 232 AEQLLYGDPVVYAEQTPYQRIVVTRRGNGRGPDLRLYLNGRLQFSSRDEYRYHEALVHPAMAASARPRRVLVLGGGDGLA 311 (521)
T ss_pred HHhHhccCeEEEEccCCCeEEEEEEecCCCCcceEEEECCEeeccCccHHHHHHHHHHHHHhhCCCCCeEEEEcCCccHH
Confidence 3455678999999999999999999876 36 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCcEEEEEECCHHHHHHHHh--cccccc-cCCCCCCEEEEEechHhHHhhCCCCCccEEEEcCCCCCCCc-c
Q 019187 141 LREVSRHSSVEKIDICEIDKMVVDVSKQ--FFPDVA-VGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPA-Q 216 (345)
Q Consensus 141 ~~~ll~~~~~~~V~~VEid~~vi~~ar~--~~~~~~-~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi~D~~~p~~~~-~ 216 (345)
++++++++++++|++||||+++++.|++ +++..+ ..+++||++++++|+++|++.. +++||+|++|.++|..+. .
T Consensus 312 ~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~-~~~fDvIi~D~~~~~~~~~~ 390 (521)
T PRK03612 312 LREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL-AEKFDVIIVDLPDPSNPALG 390 (521)
T ss_pred HHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC-CCCCCEEEEeCCCCCCcchh
Confidence 9999999777899999999999999999 455433 2467899999999999999875 679999999999887654 5
Q ss_pred ccCcHHHHHHHHhccCCCcEEEEeccchhhhhhHHHHHHHHHHhh-cCCcceEEEEEEeecCCCcEEEEEEecCCCCCCC
Q 019187 217 ELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQI-FKGSVNYAWTTVPTYPSGVIGFMLCSTEGPPVDF 295 (345)
Q Consensus 217 ~l~t~ef~~~v~r~LkpgGvlv~~~~s~~~~~~~~~~i~~~l~~~-F~~~v~~~~~~vP~y~~g~w~~~~ask~~~~~~~ 295 (345)
.+++.+||+.++++|+|||++++|+++++.+.+.+..+.++++++ | .+..|...+|+| |+|||++|||..++..
T Consensus 391 ~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf--~v~~~~~~vps~--g~w~f~~as~~~~~~~- 465 (521)
T PRK03612 391 KLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL--ATTPYHVNVPSF--GEWGFVLAGAGARPPL- 465 (521)
T ss_pred ccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC--EEEEEEeCCCCc--chhHHHeeeCCCCccc-
Confidence 799999999999999999999999999999999999999999999 8 467778999999 7999999998743211
Q ss_pred CCCCCCCCcccccCCCCCCCCcccCHHHHHHHhcCcHHHH
Q 019187 296 KHPVNPIDADDSNCNSSKGPLKFYNSEIHTAAFCLPTFAK 335 (345)
Q Consensus 296 ~~p~~~~~~~~~~~~~~~~~l~yy~~~~h~a~f~lp~~~~ 335 (345)
...+ +...++||||+++|+++|+||+|++
T Consensus 466 ------~~~~-----~~~~~~~~y~~~~h~~~f~lp~~~~ 494 (521)
T PRK03612 466 ------AVPT-----ELPVPLRFLDPALLAAAFVFPKDMR 494 (521)
T ss_pred ------ccch-----hcccCCcccCHHHHHHHhCCChhhh
Confidence 1111 1235799999999999999999998
No 10
>PRK01581 speE spermidine synthase; Validated
Probab=100.00 E-value=3.2e-44 Score=344.51 Aligned_cols=218 Identities=28% Similarity=0.443 Sum_probs=197.3
Q ss_pred ecccEEEEeeCCCceEEEEEEcCcceEEEEcCeEeeeccchhHHHHHHHhcccccCCCCceEEEEeccchHHHHHHHhcC
Q 019187 69 KVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHS 148 (345)
Q Consensus 69 ~~~~~l~~~~s~yq~i~v~e~~~~g~~L~lDg~~q~~~~de~~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~ll~~~ 148 (345)
++.++|++++|+||+|.|+++..+ .|+|||.+|++++||++|||+|+|+++..+++|++||+||||+|++++++++++
T Consensus 95 ~~~~vl~~~~S~yQ~I~I~et~~~--~L~LDG~~Q~se~DE~iYHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~ 172 (374)
T PRK01581 95 GEHTNLFAEKSNYQNINLLQVSDI--RLYLDKQLQFSSVDEQIYHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKYE 172 (374)
T ss_pred cccCEEEecCCCCceEEEEEcCCE--EEEECCeeccccccHHHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcC
Confidence 456999999999999999999866 699999999999999999999999999999999999999999999999999998
Q ss_pred CCcEEEEEECCHHHHHHHHhc--ccccc-cCCCCCCEEEEEechHhHHhhCCCCCccEEEEcCCCCCCC-ccccCcHHHH
Q 019187 149 SVEKIDICEIDKMVVDVSKQF--FPDVA-VGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGP-AQELFEKPFF 224 (345)
Q Consensus 149 ~~~~V~~VEid~~vi~~ar~~--~~~~~-~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi~D~~~p~~~-~~~l~t~ef~ 224 (345)
++.+|++||||++|+++|+++ ++.+. ..++++|++++++|+++|++.. .++||+||+|+++|... ...+|+.+||
T Consensus 173 ~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~-~~~YDVIIvDl~DP~~~~~~~LyT~EFy 251 (374)
T PRK01581 173 TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP-SSLYDVIIIDFPDPATELLSTLYTSELF 251 (374)
T ss_pred CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc-CCCccEEEEcCCCccccchhhhhHHHHH
Confidence 889999999999999999984 33332 3467899999999999999875 67899999999998753 5789999999
Q ss_pred HHHHhccCCCcEEEEeccchhhhhhHHHHHHHHHHhhcCCcceEEEEEEeecCCCcEEEEEEecCCC
Q 019187 225 ESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGP 291 (345)
Q Consensus 225 ~~v~r~LkpgGvlv~~~~s~~~~~~~~~~i~~~l~~~F~~~v~~~~~~vP~y~~g~w~~~~ask~~~ 291 (345)
+.|+++|+|||++++|+++++..+..++.+.++++++| ..+..|.+.+|+|+ +.|||++||+...
T Consensus 252 ~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af-~~v~~y~t~vPsyg-~~WgF~~as~~~~ 316 (374)
T PRK01581 252 ARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAG-LTVKSYHTIVPSFG-TDWGFHIAANSAY 316 (374)
T ss_pred HHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhC-CceEEEEEecCCCC-CceEEEEEeCCcc
Confidence 99999999999999999999988888899999999999 56778889999995 4599999998643
No 11
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=100.00 E-value=2.7e-43 Score=330.97 Aligned_cols=249 Identities=30% Similarity=0.499 Sum_probs=219.1
Q ss_pred EeecccEEEEeeCCCceEEEEEEcCcceEEEEcCeEeeeccchhHHHHHHHhcccccCCCCceEEEEeccchHHHHHHHh
Q 019187 67 SLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSR 146 (345)
Q Consensus 67 ~~~~~~~l~~~~s~yq~i~v~e~~~~g~~L~lDg~~q~~~~de~~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~ll~ 146 (345)
.+-.+++||..+|+||+|.|.+..+ ...|+|||..|++.+||.+|||.++++++...+..++||+||||+|..+||++|
T Consensus 231 qlygdeIIh~~qspYQ~iVvTr~g~-d~rLYldG~LQfsTrDe~RYhEsLV~pals~~~~a~~vLvlGGGDGLAlRellk 309 (508)
T COG4262 231 QLYGDEIIHAIQSPYQRIVVTRRGD-DLRLYLDGGLQFSTRDEYRYHESLVYPALSSVRGARSVLVLGGGDGLALRELLK 309 (508)
T ss_pred HhhcCceeeeccCccceEEEEEecC-ceEEEEcCceeeeechhhhhhheeeecccccccccceEEEEcCCchHHHHHHHh
Confidence 3456999999999999999998764 578999999999999999999999999998888899999999999999999999
Q ss_pred cCCCcEEEEEECCHHHHHHHHhc--cccc-ccCCCCCCEEEEEechHhHHhhCCCCCccEEEEcCCCCCCCc-cccCcHH
Q 019187 147 HSSVEKIDICEIDKMVVDVSKQF--FPDV-AVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPA-QELFEKP 222 (345)
Q Consensus 147 ~~~~~~V~~VEid~~vi~~ar~~--~~~~-~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi~D~~~p~~~~-~~l~t~e 222 (345)
+|..++|+.||+||+|++.+++. +... .+.+.|||++++++|+.+|++.. .+.||+||+|.+||..+. ..+|+.|
T Consensus 310 yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a-~~~fD~vIVDl~DP~tps~~rlYS~e 388 (508)
T COG4262 310 YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA-ADMFDVVIVDLPDPSTPSIGRLYSVE 388 (508)
T ss_pred CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh-cccccEEEEeCCCCCCcchhhhhhHH
Confidence 99899999999999999999954 3333 34689999999999999999986 789999999999998775 6899999
Q ss_pred HHHHHHhccCCCcEEEEeccchhhhhhHHHHHHHHHHhhcCCcceEEEEEEeecCCCcEEEEEEecCCCCCCCCCCCCCC
Q 019187 223 FFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPPVDFKHPVNPI 302 (345)
Q Consensus 223 f~~~v~r~LkpgGvlv~~~~s~~~~~~~~~~i~~~l~~~F~~~v~~~~~~vP~y~~g~w~~~~ask~~~~~~~~~p~~~~ 302 (345)
||..+++.|+++|++++|++|+++.++.++++.+++++.= -.+-.|..++|+| |+|||++|++.. .+|..|.
T Consensus 389 FY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG-~~~~Pyhv~VPTF--GeWGf~l~~~~~--~~fep~~--- 460 (508)
T COG4262 389 FYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAG-YRVWPYHVHVPTF--GEWGFILAAPGD--ADFEPPT--- 460 (508)
T ss_pred HHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHHhCc-ceeeeeEEecCcc--cccceeeccccc--CCCCCCc---
Confidence 9999999999999999999999999999999999999873 2456677899999 899999999873 4443221
Q ss_pred CcccccCCCCCCCCcccCHHHHHHHhcCcHH
Q 019187 303 DADDSNCNSSKGPLKFYNSEIHTAAFCLPTF 333 (345)
Q Consensus 303 ~~~~~~~~~~~~~l~yy~~~~h~a~f~lp~~ 333 (345)
+...+++|.|.++..|+|++-+-
T Consensus 461 --------e~~~~t~FLd~e~~~a~~~fg~d 483 (508)
T COG4262 461 --------EYRPPTRFLDAEVLHAAFVFGPD 483 (508)
T ss_pred --------ccCcccchhhHHHHHHHHhcCCC
Confidence 23468999999999999988643
No 12
>PRK04457 spermidine synthase; Provisional
Probab=99.93 E-value=9.6e-25 Score=204.45 Aligned_cols=200 Identities=22% Similarity=0.344 Sum_probs=156.3
Q ss_pred EeeCCCceEEEEEEcCcceEEEEcC-eEeee----c--cchhHHHHHHHhcccccCCCCceEEEEeccchHHHHHHHhcC
Q 019187 76 QGKSDYQNVMVFQSSTYGKVLILDG-VIQLT----E--RDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHS 148 (345)
Q Consensus 76 ~~~s~yq~i~v~e~~~~g~~L~lDg-~~q~~----~--~de~~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~ll~~~ 148 (345)
-.++.|+.|.|+|... .|.|.+|+ ..|+. . ...+.|+++|.. .+...+.+++||+||||+|.+++.++++.
T Consensus 11 ~~~~~~~~i~v~e~~~-~R~L~f~~~~~qs~~~~~~P~~l~~~y~~~m~~-~l~~~~~~~~vL~IG~G~G~l~~~l~~~~ 88 (262)
T PRK04457 11 PAKAGFPEVGVSEEGG-VRSLHLGSDTVQSSMRIDDPSELELAYTRAMMG-FLLFNPRPQHILQIGLGGGSLAKFIYTYL 88 (262)
T ss_pred cccccCCCcEEEecCC-EEEEEECCCcceeeeecCCcccccCHHHHHHHH-HHhcCCCCCEEEEECCCHhHHHHHHHHhC
Confidence 3467899999999875 48899988 46664 2 234678886643 22334678999999999999999998886
Q ss_pred CCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEEEcCCCCCCCccccCcHHHHHHHH
Q 019187 149 SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVA 228 (345)
Q Consensus 149 ~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~ 228 (345)
+..+|++||+|+++++.|+++|... ..+++++++++|+.+++... .++||+|++|.++....+..+.+.+|++.|+
T Consensus 89 p~~~v~~VEidp~vi~~A~~~f~~~---~~~~rv~v~~~Da~~~l~~~-~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~ 164 (262)
T PRK04457 89 PDTRQTAVEINPQVIAVARNHFELP---ENGERFEVIEADGAEYIAVH-RHSTDVILVDGFDGEGIIDALCTQPFFDDCR 164 (262)
T ss_pred CCCeEEEEECCHHHHHHHHHHcCCC---CCCCceEEEECCHHHHHHhC-CCCCCEEEEeCCCCCCCccccCcHHHHHHHH
Confidence 6789999999999999999998643 13579999999999999865 5789999999987666667788999999999
Q ss_pred hccCCCcEEEEeccchhhhhhHHHHHHHHHHhhcCCcceEEEEEEeecCCCcEEEEEEecC
Q 019187 229 KALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTE 289 (345)
Q Consensus 229 r~LkpgGvlv~~~~s~~~~~~~~~~i~~~l~~~F~~~v~~~~~~vP~y~~g~w~~~~ask~ 289 (345)
++|+|||++++|. |.....+..++++++++|+..+ + .+|....|++ .++|++.
T Consensus 165 ~~L~pgGvlvin~---~~~~~~~~~~l~~l~~~F~~~~--~--~~~~~~~~N~-v~~a~~~ 217 (262)
T PRK04457 165 NALSSDGIFVVNL---WSRDKRYDRYLERLESSFEGRV--L--ELPAESHGNV-AVFAFKS 217 (262)
T ss_pred HhcCCCcEEEEEc---CCCchhHHHHHHHHHHhcCCcE--E--EEecCCCccE-EEEEECC
Confidence 9999999999974 3344556788999999995432 2 2455555554 5667764
No 13
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.69 E-value=7.3e-16 Score=138.65 Aligned_cols=164 Identities=16% Similarity=0.255 Sum_probs=137.0
Q ss_pred eEEEEcCeEeeeccchhHHHHHHHhcccccCCCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhccccc
Q 019187 94 KVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDV 173 (345)
Q Consensus 94 ~~L~lDg~~q~~~~de~~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~ 173 (345)
..+.+||.-|.....+..+...+..+.+....+..+|||.+.|-|.++.+.++.. ...|..||.||.|+++|+-+- +
T Consensus 102 PTiEIdGIrMhrt~~tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rG-A~~VitvEkdp~VLeLa~lNP--w 178 (287)
T COG2521 102 PTIEIDGIRMHRTKGTDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERG-AIHVITVEKDPNVLELAKLNP--W 178 (287)
T ss_pred CeEEEccEEEecccCcCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcC-CcEEEEEeeCCCeEEeeccCC--C
Confidence 5789999988877777788888887777656678899999999999999999983 558999999999999997652 2
Q ss_pred ccCCCCCCEEEEEechHhHHhhCCCCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEeccchh---hhhhH
Q 019187 174 AVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIW---LHMHI 250 (345)
Q Consensus 174 ~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s~~---~~~~~ 250 (345)
+..+.+.+++++.||+.+++++..+++||+||.|++.- ..+..||+.+||++++|+|+|||.+.-..+.|- ...+.
T Consensus 179 Sr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDPPRf-S~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~ 257 (287)
T COG2521 179 SRELFEIAIKIILGDAYEVVKDFDDESFDAIIHDPPRF-SLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDL 257 (287)
T ss_pred CccccccccEEecccHHHHHhcCCccccceEeeCCCcc-chhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCCh
Confidence 23445668999999999999999888999999998753 345589999999999999999999988776654 44677
Q ss_pred HHHHHHHHHhh
Q 019187 251 IEDIVANCRQI 261 (345)
Q Consensus 251 ~~~i~~~l~~~ 261 (345)
.+.+.+.++++
T Consensus 258 ~~gVa~RLr~v 268 (287)
T COG2521 258 PKGVAERLRRV 268 (287)
T ss_pred hHHHHHHHHhc
Confidence 88888999876
No 14
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.60 E-value=3.4e-15 Score=120.80 Aligned_cols=109 Identities=18% Similarity=0.254 Sum_probs=84.1
Q ss_pred CceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEEE
Q 019187 127 PKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIV 206 (345)
Q Consensus 127 ~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi~ 206 (345)
..+|||||||+|..+.++++..+..+|++||+|+.+++.|++++... -..++++++.+|+ .+.... .++||+|++
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~~~~i~~~~~d~-~~~~~~-~~~~D~v~~ 76 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEE---GLSDRITFVQGDA-EFDPDF-LEPFDLVIC 76 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHT---TTTTTEEEEESCC-HGGTTT-SSCEEEEEE
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhc---CCCCCeEEEECcc-ccCccc-CCCCCEEEE
Confidence 46999999999999999999534678999999999999999988332 1357999999998 444433 577999998
Q ss_pred cC-CCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 207 DS-SDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 207 D~-~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
.. ........ -...++++.+++.|+|||++++..
T Consensus 77 ~~~~~~~~~~~-~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 77 SGFTLHFLLPL-DERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp CSGSGGGCCHH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCccccccch-hHHHHHHHHHHHhcCCCcEEEEEE
Confidence 77 22211111 112578999999999999999863
No 15
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.50 E-value=7.9e-13 Score=121.85 Aligned_cols=131 Identities=20% Similarity=0.280 Sum_probs=104.7
Q ss_pred CCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
+..++|||||||+|.++..++++.+..+|++||+++++.+.|+++.... .+ ..|++++++|..+|.+.....+||+|
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln--~l-~~ri~v~~~Di~~~~~~~~~~~fD~I 119 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALN--PL-EERIQVIEADIKEFLKALVFASFDLI 119 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhC--cc-hhceeEehhhHHHhhhcccccccCEE
Confidence 3478999999999999999999855589999999999999999987653 33 46999999999999887655679999
Q ss_pred EEcCCCCC---C--C------c---cccCcHHHHHHHHhccCCCcEEEEeccchhhhhhHHHHHHHHHHh-hcC
Q 019187 205 IVDSSDPI---G--P------A---QELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQ-IFK 263 (345)
Q Consensus 205 i~D~~~p~---~--~------~---~~l~t~ef~~~v~r~LkpgGvlv~~~~s~~~~~~~~~~i~~~l~~-~F~ 263 (345)
+++++... . + + ..+--.++++.+.++|||||.+++ .+.++.+.+++..+++ -|.
T Consensus 120 i~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~-----V~r~erl~ei~~~l~~~~~~ 188 (248)
T COG4123 120 ICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF-----VHRPERLAEIIELLKSYNLE 188 (248)
T ss_pred EeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE-----EecHHHHHHHHHHHHhcCCC
Confidence 99876321 1 0 0 112236899999999999999986 3567888889999987 453
No 16
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.49 E-value=1.8e-13 Score=111.62 Aligned_cols=110 Identities=26% Similarity=0.491 Sum_probs=87.2
Q ss_pred ceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEEEc
Q 019187 128 KKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVD 207 (345)
Q Consensus 128 ~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi~D 207 (345)
.+|||+|||+|.++..+++.. ..+++++|+|+..++.++++++.. +. ..+++++++|..++.+..+.++||+|++|
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~--~~-~~~~~~~~~D~~~~~~~~~~~~~D~Iv~n 77 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRN--GL-DDRVEVIVGDARDLPEPLPDGKFDLIVTN 77 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHC--TT-TTTEEEEESHHHHHHHTCTTT-EEEEEE-
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHc--cC-CceEEEEECchhhchhhccCceeEEEEEC
Confidence 589999999999999999986 689999999999999999998864 22 35799999999998855557899999998
Q ss_pred CCCCCCC----ccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 208 SSDPIGP----AQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 208 ~~~p~~~----~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
++..... ...-....|++.+.++|+|||++++..
T Consensus 78 pP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 78 PPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp -STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 8653211 111234689999999999999998743
No 17
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.49 E-value=8.2e-14 Score=122.29 Aligned_cols=108 Identities=20% Similarity=0.334 Sum_probs=84.9
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
..++|||||||+|.++..++++.+..+|+++|+++.+++.+++++..+ +.+ +++++..|..+.+. .++||+|+
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n--~~~--~v~~~~~d~~~~~~---~~~fD~Iv 103 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERN--GLE--NVEVVQSDLFEALP---DGKFDLIV 103 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHT--TCT--TEEEEESSTTTTCC---TTCEEEEE
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhc--Ccc--cccccccccccccc---ccceeEEE
Confidence 567999999999999999999876668999999999999999998765 222 29999999776543 58999999
Q ss_pred EcCCCCCCCc-cccCcHHHHHHHHhccCCCcEEEEe
Q 019187 206 VDSSDPIGPA-QELFEKPFFESVAKALRPGGVVSTQ 240 (345)
Q Consensus 206 ~D~~~p~~~~-~~l~t~ef~~~v~r~LkpgGvlv~~ 240 (345)
++++...+.. ......+|++.+.+.|+|||.+++-
T Consensus 104 ~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv 139 (170)
T PF05175_consen 104 SNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLV 139 (170)
T ss_dssp E---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EccchhcccccchhhHHHHHHHHHHhccCCCEEEEE
Confidence 9987544432 1223478999999999999988653
No 18
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.47 E-value=8.8e-13 Score=118.17 Aligned_cols=114 Identities=21% Similarity=0.365 Sum_probs=92.4
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhC-CCCCccEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV-PEGTYDAV 204 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~-~~~~yDvI 204 (345)
...+|||||||+|..+..+++..+..++++||+++.+++.|++..... + -.+++++.+|+.+++... +.+.+|.|
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~--~--l~ni~~i~~d~~~~~~~~~~~~~~d~v 91 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKL--G--LKNLHVLCGDANELLDKFFPDGSLSKV 91 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHh--C--CCCEEEEccCHHHHHHhhCCCCceeEE
Confidence 346999999999999999988766779999999999999998876543 2 248999999998876443 34689999
Q ss_pred EEcCCCCCCCc----cccCcHHHHHHHHhccCCCcEEEEeccc
Q 019187 205 IVDSSDPIGPA----QELFEKPFFESVAKALRPGGVVSTQAES 243 (345)
Q Consensus 205 i~D~~~p~~~~----~~l~t~ef~~~v~r~LkpgGvlv~~~~s 243 (345)
+++.++|+... ..+...++++.++++|+|||.|.+.+..
T Consensus 92 ~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~ 134 (194)
T TIGR00091 92 FLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN 134 (194)
T ss_pred EEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC
Confidence 99998887432 2345578999999999999999987644
No 19
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.46 E-value=1.2e-12 Score=118.19 Aligned_cols=127 Identities=21% Similarity=0.285 Sum_probs=94.9
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHh-hCCCCCccEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLK-AVPEGTYDAV 204 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~-~~~~~~yDvI 204 (345)
+..+|||||||+|..+..+++..+..+|++||+++.+++.|++++... .-++++++++|+.+.+. ..++++||+|
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~----~~~~v~~~~~d~~~~l~~~~~~~~~D~V 115 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEE----GLTNLRLLCGDAVEVLLDMFPDGSLDRI 115 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHc----CCCCEEEEecCHHHHHHHHcCccccceE
Confidence 457999999999999999988755678999999999999999877543 22579999999833333 2346789999
Q ss_pred EEcCCCCCCCc----cccCcHHHHHHHHhccCCCcEEEEeccchhhhhhHHHHHHHHHHh
Q 019187 205 IVDSSDPIGPA----QELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQ 260 (345)
Q Consensus 205 i~D~~~p~~~~----~~l~t~ef~~~v~r~LkpgGvlv~~~~s~~~~~~~~~~i~~~l~~ 260 (345)
++...+|+... .......+++.+.++|+|||++++.+.. ...+..+++.+++
T Consensus 116 ~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~----~~~~~~~~~~~~~ 171 (202)
T PRK00121 116 YLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDW----EGYAEYMLEVLSA 171 (202)
T ss_pred EEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCC----HHHHHHHHHHHHh
Confidence 99776665321 1122468999999999999999986533 3344455555554
No 20
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.41 E-value=1.1e-12 Score=118.71 Aligned_cols=107 Identities=29% Similarity=0.469 Sum_probs=87.9
Q ss_pred CCCceEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhC----CCC
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRH-SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV----PEG 199 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~-~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~----~~~ 199 (345)
.+|++||+||++.|..+.++++. ++..+|+.+|+|++..+.|++++... ++. .+++++.+|+.+++.+. +.+
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~a--g~~-~~I~~~~gda~~~l~~l~~~~~~~ 120 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKA--GLD-DRIEVIEGDALEVLPELANDGEEG 120 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHT--TGG-GGEEEEES-HHHHHHHHHHTTTTT
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhc--CCC-CcEEEEEeccHhhHHHHHhccCCC
Confidence 37899999999999999999975 55679999999999999999998764 343 59999999999987753 135
Q ss_pred CccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 200 TYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 200 ~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
+||+|++|+.... -.++|+.+.+.|+|||++++..
T Consensus 121 ~fD~VFiDa~K~~-------y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 121 QFDFVFIDADKRN-------YLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp SEEEEEEESTGGG-------HHHHHHHHHHHEEEEEEEEEET
T ss_pred ceeEEEEcccccc-------hhhHHHHHhhhccCCeEEEEcc
Confidence 8999999985422 2478999999999999999864
No 21
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.41 E-value=1.6e-12 Score=111.51 Aligned_cols=108 Identities=20% Similarity=0.315 Sum_probs=84.3
Q ss_pred CCceEEEEeccchHHHHHHH-hcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 126 NPKKVLVIGGGDGGVLREVS-RHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll-~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
+..+|||||||+|.++..++ +..+..++++||+++++++.|++.+... .-++++++++|..+ +...-.++||+|
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~----~~~ni~~~~~d~~~-l~~~~~~~~D~I 77 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKEL----GLDNIEFIQGDIED-LPQELEEKFDII 77 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHT----TSTTEEEEESBTTC-GCGCSSTTEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccc----cccccceEEeehhc-cccccCCCeeEE
Confidence 46799999999999999999 5555779999999999999999977654 23489999999988 543102789999
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEecc
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAE 242 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~ 242 (345)
+++........ ...+++.+.+.|+++|++++...
T Consensus 78 ~~~~~l~~~~~----~~~~l~~~~~~lk~~G~~i~~~~ 111 (152)
T PF13847_consen 78 ISNGVLHHFPD----PEKVLKNIIRLLKPGGILIISDP 111 (152)
T ss_dssp EEESTGGGTSH----HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEcCchhhccC----HHHHHHHHHHHcCCCcEEEEEEC
Confidence 98755422111 24789999999999999988653
No 22
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.39 E-value=2.4e-12 Score=105.40 Aligned_cols=104 Identities=19% Similarity=0.239 Sum_probs=82.8
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
...+|||||||.|..+..+++..+..+|+++|+++.+++.+++++... ..++++++.+|+...+... .++||+|+
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~D~v~ 93 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRF----GVSNIVIVEGDAPEALEDS-LPEPDRVF 93 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHh----CCCceEEEeccccccChhh-cCCCCEEE
Confidence 456999999999999999998755579999999999999999887653 2347899999976544333 46899999
Q ss_pred EcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 206 ~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
++.... . ..++++.+++.|+|||.++++.
T Consensus 94 ~~~~~~-----~--~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 94 IGGSGG-----L--LQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred ECCcch-----h--HHHHHHHHHHHcCCCCEEEEEe
Confidence 865321 1 2489999999999999999864
No 23
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.39 E-value=3.3e-12 Score=113.42 Aligned_cols=101 Identities=19% Similarity=0.210 Sum_probs=81.5
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
.+++|||||||+|.++..+++..+..+|++||+++.+++.++++.... .-++++++.+|+.++. ..++||+|+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~----~~~~i~~i~~d~~~~~---~~~~fD~I~ 114 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAEL----GLNNVEIVNGRAEDFQ---HEEQFDVIT 114 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHh----CCCCeEEEecchhhcc---ccCCccEEE
Confidence 368999999999999999887655678999999999999999876543 2236999999988752 257899999
Q ss_pred EcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 206 ~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
++.. .. -.++++.+++.|+|||++++..
T Consensus 115 s~~~---~~-----~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 115 SRAL---AS-----LNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred ehhh---hC-----HHHHHHHHHHhcCCCCEEEEEc
Confidence 8752 11 2468899999999999999864
No 24
>PLN02476 O-methyltransferase
Probab=99.38 E-value=1.8e-11 Score=115.16 Aligned_cols=107 Identities=21% Similarity=0.359 Sum_probs=89.3
Q ss_pred CCCceEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhC----CCC
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRH-SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV----PEG 199 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~-~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~----~~~ 199 (345)
.++++||+||+|+|..+.++++. ++..+|+.+|+|++..+.|++++... ++. .+++++.+|+.+.+++. ..+
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~a--Gl~-~~I~li~GdA~e~L~~l~~~~~~~ 193 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELA--GVS-HKVNVKHGLAAESLKSMIQNGEGS 193 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--CCC-CcEEEEEcCHHHHHHHHHhcccCC
Confidence 46899999999999999999875 44568999999999999999999865 444 58999999999998653 136
Q ss_pred CccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 200 TYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 200 ~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
+||+|++|+.... ..++|+.+.+.|+|||++++..
T Consensus 194 ~FD~VFIDa~K~~-------Y~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 194 SYDFAFVDADKRM-------YQDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred CCCEEEECCCHHH-------HHHHHHHHHHhcCCCcEEEEec
Confidence 8999999986432 2488999999999999998753
No 25
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.38 E-value=1.5e-11 Score=109.75 Aligned_cols=103 Identities=19% Similarity=0.267 Sum_probs=83.8
Q ss_pred CCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
+.+.+|||||||+|..+..+++..+..+|+++|+++.+++.|+++.... ++ .+++++.+|+.++.. .++||+|
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~--~l--~~i~~~~~d~~~~~~---~~~fDlV 116 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAEL--GL--KNVTVVHGRAEEFGQ---EEKFDVV 116 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHc--CC--CCEEEEeccHhhCCC---CCCccEE
Confidence 3478999999999999999887655679999999999999999987664 22 349999999877532 5689999
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEecc
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAE 242 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~ 242 (345)
+++.... -..+++.+++.|+|||++++...
T Consensus 117 ~~~~~~~--------~~~~l~~~~~~LkpGG~lv~~~~ 146 (187)
T PRK00107 117 TSRAVAS--------LSDLVELCLPLLKPGGRFLALKG 146 (187)
T ss_pred EEccccC--------HHHHHHHHHHhcCCCeEEEEEeC
Confidence 9875321 25799999999999999998643
No 26
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.38 E-value=5.1e-12 Score=125.00 Aligned_cols=129 Identities=16% Similarity=0.225 Sum_probs=97.0
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhC--CCCCccE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV--PEGTYDA 203 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~--~~~~yDv 203 (345)
+.++|||+|||+|+++..++.. +..+|++||+|+.+++.|++++..+ +++..+++++.+|+.+++++. ..++||+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~N--gl~~~~v~~i~~D~~~~l~~~~~~~~~fDl 296 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELN--KLDLSKAEFVRDDVFKLLRTYRDRGEKFDV 296 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHc--CCCCCcEEEEEccHHHHHHHHHhcCCCCCE
Confidence 4689999999999998887655 4569999999999999999998765 333348999999999998653 2468999
Q ss_pred EEEcCCCCCCCccccC-----cHHHHHHHHhccCCCcEEEEeccchhhhhhHHHHHHHH
Q 019187 204 VIVDSSDPIGPAQELF-----EKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVAN 257 (345)
Q Consensus 204 Ii~D~~~p~~~~~~l~-----t~ef~~~v~r~LkpgGvlv~~~~s~~~~~~~~~~i~~~ 257 (345)
||+|++.-......++ -.++++.+.++|+|||++++-++|.....+.+.+++..
T Consensus 297 VilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~ 355 (396)
T PRK15128 297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIAD 355 (396)
T ss_pred EEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHH
Confidence 9999875322211111 13456678899999999998877776666655555543
No 27
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.37 E-value=2.7e-12 Score=125.85 Aligned_cols=135 Identities=16% Similarity=0.199 Sum_probs=96.4
Q ss_pred HHHhcccccCCCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHh
Q 019187 115 MITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLK 194 (345)
Q Consensus 115 ~l~~l~l~~~~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~ 194 (345)
++.++|.. ..++|||||||+|.++..+++..+..+|++||+++.+++.|++++..+... ...+++++.+|+...+.
T Consensus 220 lL~~lp~~---~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~-~~~~v~~~~~D~l~~~~ 295 (378)
T PRK15001 220 FMQHLPEN---LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPE-ALDRCEFMINNALSGVE 295 (378)
T ss_pred HHHhCCcc---cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcc-cCceEEEEEccccccCC
Confidence 45665532 236999999999999999988766779999999999999999987644110 12478999999865432
Q ss_pred hCCCCCccEEEEcCCCCCCCc-cccCcHHHHHHHHhccCCCcEEEEeccchhhhhhHHHHHHHHHHhhcC
Q 019187 195 AVPEGTYDAVIVDSSDPIGPA-QELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFK 263 (345)
Q Consensus 195 ~~~~~~yDvIi~D~~~p~~~~-~~l~t~ef~~~v~r~LkpgGvlv~~~~s~~~~~~~~~~i~~~l~~~F~ 263 (345)
.++||+|+++++.+.+.. ..-...++++.++++|+|||.+.+..... ......+++.|+
T Consensus 296 ---~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~-------l~y~~~L~~~fg 355 (378)
T PRK15001 296 ---PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRH-------LDYFHKLKKIFG 355 (378)
T ss_pred ---CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecC-------cCHHHHHHHHcC
Confidence 468999999876544321 11113578999999999999988754221 123455666784
No 28
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.37 E-value=1.6e-11 Score=112.34 Aligned_cols=107 Identities=14% Similarity=0.172 Sum_probs=83.4
Q ss_pred CCCceEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccE
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRH-SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~-~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDv 203 (345)
....+|||||||+|..+..++++ ++..+|+++|+++.+++.|++.+... .-++++++.+|+.++. .++++||+
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~----~~~~v~~~~~d~~~~~--~~~~~fD~ 117 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDA----GLHNVELVHGNAMELP--FDDNSFDY 117 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhc----CCCceEEEEechhcCC--CCCCCccE
Confidence 34579999999999999999876 34569999999999999999887543 2357999999987653 23678999
Q ss_pred EEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 204 Ii~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
|++...-...+. ..++++.+.++|+|||.+++..
T Consensus 118 V~~~~~l~~~~~----~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 118 VTIGFGLRNVPD----YMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred EEEecccccCCC----HHHHHHHHHHHcCcCeEEEEEE
Confidence 998654322221 2478999999999999998754
No 29
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.37 E-value=3.2e-12 Score=118.01 Aligned_cols=106 Identities=25% Similarity=0.387 Sum_probs=87.7
Q ss_pred CCCceEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhC----CCC
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRH-SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV----PEG 199 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~-~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~----~~~ 199 (345)
.++++||+||||+|..+..+++. ++..+|+++|+|++.++.|++++... ++. .+++++.+|+.+.+... +.+
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~--gl~-~~i~~~~gda~~~L~~l~~~~~~~ 143 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKA--GVD-HKINFIQSDALSALDQLLNNDPKP 143 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--CCC-CcEEEEEccHHHHHHHHHhCCCCC
Confidence 46889999999999999988875 45679999999999999999998765 444 58999999999987643 146
Q ss_pred CccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEe
Q 019187 200 TYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (345)
Q Consensus 200 ~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~ 240 (345)
+||+|++|...+.. .++++.+.+.|+|||++++.
T Consensus 144 ~fD~VfiDa~k~~y-------~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 144 EFDFAFVDADKPNY-------VHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred CCCEEEECCCHHHH-------HHHHHHHHHhcCCCeEEEEE
Confidence 89999999764322 37899999999999999873
No 30
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.36 E-value=4.4e-12 Score=115.20 Aligned_cols=107 Identities=22% Similarity=0.435 Sum_probs=91.3
Q ss_pred CCCceEEEEeccchHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEE-echHhHHhhCCCCCcc
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHSS-VEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHI-GDGVAFLKAVPEGTYD 202 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~~-~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~-~D~~~~l~~~~~~~yD 202 (345)
.++++||+||++.|..+.+++..-+ ..+++.||+|++.++.|++++.+. +.. ++++++. +|+.+.+.....++||
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~a--g~~-~~i~~~~~gdal~~l~~~~~~~fD 134 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEA--GVD-DRIELLLGGDALDVLSRLLDGSFD 134 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHc--CCc-ceEEEEecCcHHHHHHhccCCCcc
Confidence 4789999999999999999988633 679999999999999999999875 444 4699999 6999998863369999
Q ss_pred EEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 203 AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 203 vIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
+|++|+..... .+||+.+.++|+|||++++..
T Consensus 135 liFIDadK~~y-------p~~le~~~~lLr~GGliv~DN 166 (219)
T COG4122 135 LVFIDADKADY-------PEYLERALPLLRPGGLIVADN 166 (219)
T ss_pred EEEEeCChhhC-------HHHHHHHHHHhCCCcEEEEee
Confidence 99999876544 489999999999999998853
No 31
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.35 E-value=1.2e-11 Score=121.18 Aligned_cols=117 Identities=16% Similarity=0.239 Sum_probs=96.4
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
....+||||||+|..+..+++..+...++++|+++.+++.|.+..... + -.++.++.+|+..++...+++++|.|+
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~--g--L~NV~~i~~DA~~ll~~~~~~s~D~I~ 197 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELL--N--LKNLLIINYDARLLLELLPSNSVEKIF 197 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc--C--CCcEEEEECCHHHhhhhCCCCceeEEE
Confidence 345899999999999999998766779999999999999998876543 2 247999999998876655678999999
Q ss_pred EcCCCCCCCc--cccCcHHHHHHHHhccCCCcEEEEeccchhh
Q 019187 206 VDSSDPIGPA--QELFEKPFFESVAKALRPGGVVSTQAESIWL 246 (345)
Q Consensus 206 ~D~~~p~~~~--~~l~t~ef~~~v~r~LkpgGvlv~~~~s~~~ 246 (345)
+..++||... ..+....|++.++|+|+|||.+.+.+.+..+
T Consensus 198 lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y 240 (390)
T PRK14121 198 VHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELY 240 (390)
T ss_pred EeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHH
Confidence 9988887432 3466789999999999999999998765443
No 32
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.35 E-value=2e-11 Score=112.45 Aligned_cols=106 Identities=17% Similarity=0.278 Sum_probs=86.0
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
.+.+|||||||+|-.+..+++..+..+|+++|+++.|++.+++.+... ....++++.+|+.+.. .++++||+|.
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~----~~~~i~fv~~dAe~LP--f~D~sFD~vt 124 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKK----GVQNVEFVVGDAENLP--FPDNSFDAVT 124 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhcc----CccceEEEEechhhCC--CCCCccCEEE
Confidence 678999999999999999999866789999999999999999988753 2223999999987753 4589999999
Q ss_pred EcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 206 ~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
+...-...+. -...+++++|+|||||++++..
T Consensus 125 ~~fglrnv~d----~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 125 ISFGLRNVTD----IDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred eeehhhcCCC----HHHHHHHHHHhhcCCeEEEEEE
Confidence 8544322221 2578999999999999888754
No 33
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.34 E-value=2.8e-12 Score=99.65 Aligned_cols=95 Identities=18% Similarity=0.366 Sum_probs=74.4
Q ss_pred EEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEEEcCCC
Q 019187 131 LVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSD 210 (345)
Q Consensus 131 L~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi~D~~~ 210 (345)
||||||+|..+..++++ +..+|+++|+++.+++.+++.... .++.++.+|..++ ..++++||+|++...-
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~-------~~~~~~~~d~~~l--~~~~~sfD~v~~~~~~ 70 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKN-------EGVSFRQGDAEDL--PFPDNSFDVVFSNSVL 70 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTT-------STEEEEESBTTSS--SS-TT-EEEEEEESHG
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccc-------cCchheeehHHhC--ccccccccccccccce
Confidence 89999999999999999 568999999999999999998753 4677999997776 2347899999975543
Q ss_pred CCCCccccCcHHHHHHHHhccCCCcEEEE
Q 019187 211 PIGPAQELFEKPFFESVAKALRPGGVVST 239 (345)
Q Consensus 211 p~~~~~~l~t~ef~~~v~r~LkpgGvlv~ 239 (345)
.... . ...++++++|+|||||++++
T Consensus 71 ~~~~--~--~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 71 HHLE--D--PEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GGSS--H--HHHHHHHHHHHEEEEEEEEE
T ss_pred eecc--C--HHHHHHHHHHHcCcCeEEeC
Confidence 3221 1 25899999999999999974
No 34
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.33 E-value=1.1e-11 Score=115.50 Aligned_cols=101 Identities=19% Similarity=0.299 Sum_probs=82.7
Q ss_pred CCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
..+.+|||||||+|.++..+++..+..+|++||+++.+++.|++.+ ++++++.+|+..+.. .++||+|
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~---------~~~~~~~~d~~~~~~---~~~fD~v 97 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL---------PDCQFVEADIASWQP---PQALDLI 97 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC---------CCCeEEECchhccCC---CCCccEE
Confidence 3567999999999999999988755679999999999999999865 257889999876642 5689999
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
++...-++.+. ...+++.+.++|+|||.++++.
T Consensus 98 ~~~~~l~~~~d----~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 98 FANASLQWLPD----HLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred EEccChhhCCC----HHHHHHHHHHhcCCCcEEEEEC
Confidence 98766543321 2579999999999999999875
No 35
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.33 E-value=5.1e-12 Score=112.92 Aligned_cols=115 Identities=20% Similarity=0.326 Sum_probs=96.8
Q ss_pred HHHHHHhcccccCCCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHh
Q 019187 112 YQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVA 191 (345)
Q Consensus 112 Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~ 191 (345)
..+.++++|++ .+.+|.|||||.|..+..++++.+...|+++|-|++|++.|++.++ ++++..+|.+.
T Consensus 19 a~dLla~Vp~~---~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp---------~~~f~~aDl~~ 86 (257)
T COG4106 19 ARDLLARVPLE---RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP---------DATFEEADLRT 86 (257)
T ss_pred HHHHHhhCCcc---ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC---------CCceecccHhh
Confidence 35678888876 6789999999999999999999889999999999999999998774 57899999998
Q ss_pred HHhhCCCCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEeccchh
Q 019187 192 FLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIW 245 (345)
Q Consensus 192 ~l~~~~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s~~ 245 (345)
|- ++...|+|+.++.-.+-+.. .+.+..+...|+|||++.+|-...+
T Consensus 87 w~---p~~~~dllfaNAvlqWlpdH----~~ll~rL~~~L~Pgg~LAVQmPdN~ 133 (257)
T COG4106 87 WK---PEQPTDLLFANAVLQWLPDH----PELLPRLVSQLAPGGVLAVQMPDNL 133 (257)
T ss_pred cC---CCCccchhhhhhhhhhcccc----HHHHHHHHHhhCCCceEEEECCCcc
Confidence 83 36789999988876654421 3788999999999999999985433
No 36
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.32 E-value=3.8e-12 Score=117.41 Aligned_cols=107 Identities=21% Similarity=0.316 Sum_probs=74.2
Q ss_pred CCCceEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccE
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRH-SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~-~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDv 203 (345)
..+.+|||+|||+|.+++.++++ .+..+|+++|+++.|++.|++.+... ...+++++++|+.+.- .++++||+
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~----~~~~i~~v~~da~~lp--~~d~sfD~ 119 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKRE----GLQNIEFVQGDAEDLP--FPDNSFDA 119 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHT----T--SEEEEE-BTTB----S-TT-EEE
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhh----CCCCeeEEEcCHHHhc--CCCCceeE
Confidence 35679999999999999999987 34569999999999999999987653 2348999999987753 24789999
Q ss_pred EEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 204 Ii~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
|++-..-...+. ....+++++|+|||||.+++-.
T Consensus 120 v~~~fglrn~~d----~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 120 VTCSFGLRNFPD----RERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp EEEES-GGG-SS----HHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEHHhhHHhhCC----HHHHHHHHHHHcCCCeEEEEee
Confidence 997442211111 2578999999999999988743
No 37
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.32 E-value=1.1e-11 Score=121.74 Aligned_cols=129 Identities=19% Similarity=0.299 Sum_probs=104.1
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCC--CCCccE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVP--EGTYDA 203 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~--~~~yDv 203 (345)
+.++||++-|-||+.+.+++.. +..+||.||+|...++.|++++..+ ++...++.++++|+++|++... ..+||+
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g-GA~~vt~VD~S~~al~~a~~N~~LN--g~~~~~~~~i~~Dvf~~l~~~~~~g~~fDl 293 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG-GASEVTSVDLSKRALEWARENAELN--GLDGDRHRFIVGDVFKWLRKAERRGEKFDL 293 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc-CCCceEEEeccHHHHHHHHHHHHhc--CCCccceeeehhhHHHHHHHHHhcCCcccE
Confidence 3789999999999999998887 4679999999999999999999876 6667789999999999998752 358999
Q ss_pred EEEcCCCCCCCccccCc-----HHHHHHHHhccCCCcEEEEeccchhhhhhHHHHHHHH
Q 019187 204 VIVDSSDPIGPAQELFE-----KPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVAN 257 (345)
Q Consensus 204 Ii~D~~~p~~~~~~l~t-----~ef~~~v~r~LkpgGvlv~~~~s~~~~~~~~~~i~~~ 257 (345)
||+|++.-......++. ......+.++|+|||++++-+++.....+.+..++..
T Consensus 294 IilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~ 352 (393)
T COG1092 294 IILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIAR 352 (393)
T ss_pred EEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHH
Confidence 99998864433222222 3567778899999999999888777777766655543
No 38
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.32 E-value=2.6e-11 Score=108.89 Aligned_cols=121 Identities=16% Similarity=0.274 Sum_probs=91.7
Q ss_pred CCCceEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccE
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRH-SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~-~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDv 203 (345)
....+|||+|||+|.++.++++. .+..+|+++|+++.+++.+++++... +. ..+++++.+|+.+++... .++||+
T Consensus 39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~--g~-~~~v~~~~~d~~~~l~~~-~~~~D~ 114 (198)
T PRK00377 39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKF--GV-LNNIVLIKGEAPEILFTI-NEKFDR 114 (198)
T ss_pred CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHh--CC-CCCeEEEEechhhhHhhc-CCCCCE
Confidence 35679999999999999998875 34568999999999999999987654 11 257999999998877654 578999
Q ss_pred EEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEeccchhhhhhHHHHHHHHHHh
Q 019187 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQ 260 (345)
Q Consensus 204 Ii~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s~~~~~~~~~~i~~~l~~ 260 (345)
|+++.... ...++++.+.++|+|||.+++... ..+.+..+.+.+++
T Consensus 115 V~~~~~~~-------~~~~~l~~~~~~LkpgG~lv~~~~----~~~~~~~~~~~l~~ 160 (198)
T PRK00377 115 IFIGGGSE-------KLKEIISASWEIIKKGGRIVIDAI----LLETVNNALSALEN 160 (198)
T ss_pred EEECCCcc-------cHHHHHHHHHHHcCCCcEEEEEee----cHHHHHHHHHHHHH
Confidence 99864221 125789999999999999997542 23445556666654
No 39
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.32 E-value=1.6e-11 Score=114.02 Aligned_cols=108 Identities=16% Similarity=0.203 Sum_probs=81.8
Q ss_pred CCCceEEEEeccchHHHHHHHh--cCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCcc
Q 019187 125 PNPKKVLVIGGGDGGVLREVSR--HSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYD 202 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~--~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yD 202 (345)
+...+|||||||+|..+..+++ ..+..++++||+++.+++.|++++... + ...+++++.+|+.+. +.+.+|
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~--~-~~~~v~~~~~d~~~~----~~~~~D 127 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAY--K-APTPVDVIEGDIRDI----AIENAS 127 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc--C-CCCCeEEEeCChhhC----CCCCCC
Confidence 4567999999999999988887 334679999999999999999987643 1 134799999997654 234599
Q ss_pred EEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 203 AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 203 vIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
+|++...-+...... ...+++.++++|+|||.+++..
T Consensus 128 ~vv~~~~l~~l~~~~--~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 128 MVVLNFTLQFLEPSE--RQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred EEehhhHHHhCCHHH--HHHHHHHHHHhcCCCCEEEEEE
Confidence 999754432222111 2578999999999999998854
No 40
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.32 E-value=3.3e-11 Score=114.31 Aligned_cols=155 Identities=16% Similarity=0.172 Sum_probs=103.5
Q ss_pred CCCceEEEEEEcCcceEEEEcCeEeeeccchh-HHHHHHHhcccccCCCCceEEEEeccchHHHHHHHhcCCCcEEEEEE
Q 019187 79 SDYQNVMVFQSSTYGKVLILDGVIQLTERDEC-AYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICE 157 (345)
Q Consensus 79 s~yq~i~v~e~~~~g~~L~lDg~~q~~~~de~-~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VE 157 (345)
-|.|+|.-... .+|.-+.++..+.+..++.. ...+.+... .....+.+|||+|||+|.++..++++.+..+|+++|
T Consensus 76 ~Pl~yi~g~~~-f~g~~f~v~~~vlipr~~te~lv~~~l~~~--~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avD 152 (284)
T TIGR03533 76 IPVAYLTNEAW-FAGLEFYVDERVLIPRSPIAELIEDGFAPW--LEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVD 152 (284)
T ss_pred CcHHHHcCCCe-ecCcEEEECCCCccCCCchHHHHHHHHHHH--hccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEE
Confidence 36777743322 34666777755555444321 112222211 112345799999999999999999875567999999
Q ss_pred CCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEEEcCCCCCC-------------Ccccc------
Q 019187 158 IDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIG-------------PAQEL------ 218 (345)
Q Consensus 158 id~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi~D~~~p~~-------------~~~~l------ 218 (345)
+|+.+++.|++++... ++ ..+++++.+|+.+.+. .++||+|++|++--.. +...+
T Consensus 153 is~~al~~A~~n~~~~--~~-~~~i~~~~~D~~~~~~---~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dG 226 (284)
T TIGR03533 153 ISPDALAVAEINIERH--GL-EDRVTLIQSDLFAALP---GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDG 226 (284)
T ss_pred CCHHHHHHHHHHHHHc--CC-CCcEEEEECchhhccC---CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcH
Confidence 9999999999987654 22 2479999999876542 4579999998653110 00001
Q ss_pred --CcHHHHHHHHhccCCCcEEEEecc
Q 019187 219 --FEKPFFESVAKALRPGGVVSTQAE 242 (345)
Q Consensus 219 --~t~ef~~~v~r~LkpgGvlv~~~~ 242 (345)
+...+++.+.+.|+|||.+++..+
T Consensus 227 l~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 227 LDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 124678888999999999998764
No 41
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.32 E-value=2.1e-11 Score=108.34 Aligned_cols=102 Identities=18% Similarity=0.209 Sum_probs=81.2
Q ss_pred CCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
....+|||||||+|.++..+++..+..+|+++|+++.+++.+++++... .-.+++++.+|+...+ .++||+|
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~----~~~~i~~~~~d~~~~~----~~~~D~v 101 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRF----GCGNIDIIPGEAPIEL----PGKADAI 101 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh----CCCCeEEEecCchhhc----CcCCCEE
Confidence 3567999999999999999988755679999999999999999887654 2246999999974322 4679999
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
+++.... ...++++.+.+.|+|||.++++.
T Consensus 102 ~~~~~~~-------~~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 102 FIGGSGG-------NLTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred EECCCcc-------CHHHHHHHHHHhcCCCeEEEEEE
Confidence 9875321 12578999999999999998853
No 42
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.31 E-value=6.2e-11 Score=116.97 Aligned_cols=152 Identities=16% Similarity=0.273 Sum_probs=102.4
Q ss_pred CCCceEEEEEEcCcceEEEEcCeEeeeccchhHHHHHHHhcccccCCCCceEEEEeccchHHHHHHHhcCCCcEEEEEEC
Q 019187 79 SDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEI 158 (345)
Q Consensus 79 s~yq~i~v~e~~~~g~~L~lDg~~q~~~~de~~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEi 158 (345)
-|.|+|.=.. ..+|..+.++-.+....++.....+.+. ...+...+|||||||+|.++..+++..+..+|+++|+
T Consensus 209 ePlqYIlG~~-~F~G~~f~V~p~vLIPRpeTE~LVe~aL----~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDi 283 (423)
T PRK14966 209 EPVAYILGVR-EFYGRRFAVNPNVLIPRPETEHLVEAVL----ARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDI 283 (423)
T ss_pred CCceeEeeee-eecCcEEEeCCCccCCCccHHHHHHHhh----hccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEEC
Confidence 4788885543 3467777777655555555333333221 1123446999999999999999887655679999999
Q ss_pred CHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEEEcCCCCC-C------------CccccC------
Q 019187 159 DKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPI-G------------PAQELF------ 219 (345)
Q Consensus 159 d~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi~D~~~p~-~------------~~~~l~------ 219 (345)
|+.+++.|++++... ..+++++.+|..+.... ..++||+|++|++--. . |...|+
T Consensus 284 S~~ALe~AreNa~~~-----g~rV~fi~gDl~e~~l~-~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL 357 (423)
T PRK14966 284 SPPALETARKNAADL-----GARVEFAHGSWFDTDMP-SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGL 357 (423)
T ss_pred CHHHHHHHHHHHHHc-----CCcEEEEEcchhccccc-cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchH
Confidence 999999999987653 23799999997654211 1457999999875311 0 000111
Q ss_pred --cHHHHHHHHhccCCCcEEEEec
Q 019187 220 --EKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 220 --t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
-+.+++.+.+.|+|||.+++..
T Consensus 358 ~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 358 SCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2355666678999999988754
No 43
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.31 E-value=1.6e-11 Score=114.53 Aligned_cols=107 Identities=20% Similarity=0.327 Sum_probs=83.3
Q ss_pred CCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
..+.+|||||||+|..+..+++. ..+|++||+++++++.|++++... +. .++++++.+|+.+.... ..++||+|
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~--g~-~~~v~~~~~d~~~l~~~-~~~~fD~V 116 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAK--GV-SDNMQFIHCAAQDIAQH-LETPVDLI 116 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhc--CC-ccceEEEEcCHHHHhhh-cCCCCCEE
Confidence 35679999999999999999987 368999999999999999987643 21 35799999998876432 26789999
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
++...-..... ...+++.+.++|+|||++++..
T Consensus 117 ~~~~vl~~~~~----~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 117 LFHAVLEWVAD----PKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred EehhHHHhhCC----HHHHHHHHHHHcCCCeEEEEEE
Confidence 97543221111 1478999999999999998743
No 44
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.31 E-value=1e-11 Score=115.76 Aligned_cols=99 Identities=19% Similarity=0.303 Sum_probs=80.1
Q ss_pred CCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
..+.+|||||||+|.+++.+++..+..+|+++|+++.+++.|++. +++++.+|+.++. +.++||+|
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~d~~~~~---~~~~fD~v 93 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-----------GVDARTGDVRDWK---PKPDTDVV 93 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-----------CCcEEEcChhhCC---CCCCceEE
Confidence 356899999999999999998875557899999999999999762 4678899987663 25789999
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
++...-++.+. ...+++.++++|+|||.++++.
T Consensus 94 ~~~~~l~~~~d----~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 94 VSNAALQWVPE----HADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred EEehhhhhCCC----HHHHHHHHHHhCCCCcEEEEEc
Confidence 98765443321 2578999999999999999864
No 45
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.30 E-value=1.8e-11 Score=111.48 Aligned_cols=105 Identities=18% Similarity=0.267 Sum_probs=80.1
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
..++|||+|||.|.++..+++.. .+|+++|++++.++.|+.+..+. .-.+++......+.... .++||+|+
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~-----gv~i~y~~~~~edl~~~--~~~FDvV~ 129 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALES-----GVNIDYRQATVEDLASA--GGQFDVVT 129 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhhc-----cccccchhhhHHHHHhc--CCCccEEE
Confidence 45799999999999999999983 79999999999999999987653 22355777776665542 48999999
Q ss_pred EcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEeccc
Q 019187 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAES 243 (345)
Q Consensus 206 ~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s 243 (345)
|----...+. -..|++.|.+.+||||++++.+.+
T Consensus 130 cmEVlEHv~d----p~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 130 CMEVLEHVPD----PESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred EhhHHHccCC----HHHHHHHHHHHcCCCcEEEEeccc
Confidence 7211111111 146999999999999999987644
No 46
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.30 E-value=8.1e-11 Score=108.63 Aligned_cols=109 Identities=19% Similarity=0.357 Sum_probs=83.6
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
.+.+|||+|||+|..+..+++..+..+++++|+++.+++.|++++... .-++++++.+|+.+.+ +.++||+|+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~----~~~~~~~~~~d~~~~~---~~~~fD~Vi 159 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARL----GLDNVTFLQSDWFEPL---PGGKFDLIV 159 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc----CCCeEEEEECchhccC---cCCceeEEE
Confidence 456999999999999999998755679999999999999999987653 2237999999987643 257899999
Q ss_pred EcCCCCCCC-----cccc-----------------CcHHHHHHHHhccCCCcEEEEec
Q 019187 206 VDSSDPIGP-----AQEL-----------------FEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 206 ~D~~~p~~~-----~~~l-----------------~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
+|++-.... .... .-..+++.+.+.|+|||.+++..
T Consensus 160 ~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 160 SNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred ECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 886532110 0000 01367899999999999999864
No 47
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.29 E-value=6.1e-12 Score=100.54 Aligned_cols=97 Identities=25% Similarity=0.435 Sum_probs=72.4
Q ss_pred EEEEeccchHHHHHHHhcC---CCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEEE
Q 019187 130 VLVIGGGDGGVLREVSRHS---SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIV 206 (345)
Q Consensus 130 VL~IG~G~G~~~~~ll~~~---~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi~ 206 (345)
|||||||+|..++.+++.. +..++++||+|+++++.+++++... ..+++++++|+.++-.. .++||+|++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~-----~~~~~~~~~D~~~l~~~--~~~~D~v~~ 73 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED-----GPKVRFVQADARDLPFS--DGKFDLVVC 73 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT-----TTTSEEEESCTTCHHHH--SSSEEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc-----CCceEEEECCHhHCccc--CCCeeEEEE
Confidence 7999999999999998863 2369999999999999999988652 34899999999886432 679999998
Q ss_pred -cCCCCCCCccccCcHHHHHHHHhccCCCc
Q 019187 207 -DSSDPIGPAQELFEKPFFESVAKALRPGG 235 (345)
Q Consensus 207 -D~~~p~~~~~~l~t~ef~~~v~r~LkpgG 235 (345)
..+-..-.... ...+++.+.++|+|||
T Consensus 74 ~~~~~~~~~~~~--~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 74 SGLSLHHLSPEE--LEALLRRIARLLRPGG 101 (101)
T ss_dssp -TTGGGGSSHHH--HHHHHHHHHHTEEEEE
T ss_pred cCCccCCCCHHH--HHHHHHHHHHHhCCCC
Confidence 33121111111 2679999999999998
No 48
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.29 E-value=2.2e-11 Score=109.44 Aligned_cols=103 Identities=15% Similarity=0.177 Sum_probs=78.5
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
.+.+|||+|||+|..+..++++ ..+|+++|+++.+++.+++..... + -.++++++.|..++- . .++||+|+
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~--~--~~~v~~~~~d~~~~~--~-~~~fD~I~ 100 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAE--N--LDNLHTAVVDLNNLT--F-DGEYDFIL 100 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHc--C--CCcceEEecChhhCC--c-CCCcCEEE
Confidence 4689999999999999999987 358999999999999999876543 2 235888889976542 2 46799999
Q ss_pred EcCCCCCCCccccCcHHHHHHHHhccCCCcEEEE
Q 019187 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVST 239 (345)
Q Consensus 206 ~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~ 239 (345)
+...-...+... ...+++.++++|+|||.+++
T Consensus 101 ~~~~~~~~~~~~--~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 101 STVVLMFLEAKT--IPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred EecchhhCCHHH--HHHHHHHHHHHcCCCcEEEE
Confidence 764432222111 25899999999999998544
No 49
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.28 E-value=1.5e-11 Score=119.46 Aligned_cols=108 Identities=17% Similarity=0.263 Sum_probs=83.5
Q ss_pred CceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEEE
Q 019187 127 PKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIV 206 (345)
Q Consensus 127 ~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi~ 206 (345)
..+|||||||+|.++..+++..+..+|+++|+++.+++.|++++... ....+++..|+...+ .++||+|++
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n-----~l~~~~~~~D~~~~~----~~~fDlIvs 267 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAAN-----GLEGEVFASNVFSDI----KGRFDMIIS 267 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-----CCCCEEEEccccccc----CCCccEEEE
Confidence 46899999999999999998765678999999999999999988753 123567788875532 578999999
Q ss_pred cCCCCCCCcc-ccCcHHHHHHHHhccCCCcEEEEeccc
Q 019187 207 DSSDPIGPAQ-ELFEKPFFESVAKALRPGGVVSTQAES 243 (345)
Q Consensus 207 D~~~p~~~~~-~l~t~ef~~~v~r~LkpgGvlv~~~~s 243 (345)
+++.+.+... .--...+++.+.+.|+|||.+++.+..
T Consensus 268 NPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 268 NPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred CCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 8765443221 111368999999999999998776543
No 50
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.28 E-value=5.2e-11 Score=111.07 Aligned_cols=154 Identities=17% Similarity=0.182 Sum_probs=99.5
Q ss_pred eCCCceEEEEEEcCcceEEEEcCeEeeeccch-hHHHHHHHhcccccCCCCceEEEEeccchHHHHHHHhcCCCcEEEEE
Q 019187 78 KSDYQNVMVFQSSTYGKVLILDGVIQLTERDE-CAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDIC 156 (345)
Q Consensus 78 ~s~yq~i~v~e~~~~g~~L~lDg~~q~~~~de-~~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~V 156 (345)
.-|.|+|.=... ..|..+.++..+.+..++. ..+..++..+. ....+.+|||+|||+|.++..+++..+..+|+++
T Consensus 40 ~~Pl~yi~g~~~-f~g~~~~v~~~vf~pr~~Te~Lv~~~l~~~~--~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~v 116 (251)
T TIGR03704 40 GLPLEHVLGWAE-FCGLRIAVDPGVFVPRRRTEFLVDEAAALAR--PRSGTLVVVDLCCGSGAVGAALAAALDGIELHAA 116 (251)
T ss_pred CCCHHHhcccCe-EcCeEEEECCCCcCCCccHHHHHHHHHHhhc--ccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEE
Confidence 346677644322 2355555554433333332 22233333221 1123458999999999999999876555689999
Q ss_pred ECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEEEcCCCC-CC-------------CccccC---
Q 019187 157 EIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDP-IG-------------PAQELF--- 219 (345)
Q Consensus 157 Eid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi~D~~~p-~~-------------~~~~l~--- 219 (345)
|+|+.+++.|++++... +++++.+|..+++.....++||+|++|++.- .. +...++
T Consensus 117 Dis~~al~~A~~N~~~~-------~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~ 189 (251)
T TIGR03704 117 DIDPAAVRCARRNLADA-------GGTVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGA 189 (251)
T ss_pred ECCHHHHHHHHHHHHHc-------CCEEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCC
Confidence 99999999999988643 2478999988776432136799999997631 10 000111
Q ss_pred -----cHHHHHHHHhccCCCcEEEEec
Q 019187 220 -----EKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 220 -----t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
...+++.+.+.|+|||.+++..
T Consensus 190 dgl~~~~~i~~~a~~~L~~gG~l~l~~ 216 (251)
T TIGR03704 190 DGLDVLRRVAAGAPDWLAPGGHLLVET 216 (251)
T ss_pred cHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 2467778889999999999854
No 51
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.28 E-value=8.4e-11 Score=103.58 Aligned_cols=118 Identities=16% Similarity=0.244 Sum_probs=97.2
Q ss_pred CCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
.+..+++|||||+|+++.+++...+..+|+++|-|++.++..++++..+ .-++++++.+|+-+.+.+. .++|.|
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~f----g~~n~~vv~g~Ap~~L~~~--~~~dai 106 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARF----GVDNLEVVEGDAPEALPDL--PSPDAI 106 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHh----CCCcEEEEeccchHhhcCC--CCCCEE
Confidence 4557999999999999999997777889999999999999999998765 4579999999999999864 389999
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEeccchhhhhhHHHHHHHHHHh
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQ 260 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s~~~~~~~~~~i~~~l~~ 260 (345)
++...-. -.+.++.+...|+|||.+|.|+.. .+.....++.+++
T Consensus 107 FIGGg~~--------i~~ile~~~~~l~~ggrlV~nait----lE~~~~a~~~~~~ 150 (187)
T COG2242 107 FIGGGGN--------IEEILEAAWERLKPGGRLVANAIT----LETLAKALEALEQ 150 (187)
T ss_pred EECCCCC--------HHHHHHHHHHHcCcCCeEEEEeec----HHHHHHHHHHHHH
Confidence 9876522 258899999999999999998743 3444455555554
No 52
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=1.5e-11 Score=115.80 Aligned_cols=131 Identities=20% Similarity=0.312 Sum_probs=95.8
Q ss_pred HHHhcccccCCCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHh
Q 019187 115 MITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLK 194 (345)
Q Consensus 115 ~l~~l~l~~~~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~ 194 (345)
.+.+++.. ...+|||+|||.|.++..+++..+..++++||+|...++.||+++..+ +.+ +..++..|..+-+
T Consensus 150 Ll~~l~~~---~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N--~~~--~~~v~~s~~~~~v- 221 (300)
T COG2813 150 LLETLPPD---LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAAN--GVE--NTEVWASNLYEPV- 221 (300)
T ss_pred HHHhCCcc---CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHc--CCC--ccEEEEecccccc-
Confidence 44665543 234999999999999999999988899999999999999999998764 222 2277888865544
Q ss_pred hCCCCCccEEEEcCCCCCCCcc-ccCcHHHHHHHHhccCCCcEEEEeccchhhhhhHHHHHHHHHHhhcC
Q 019187 195 AVPEGTYDAVIVDSSDPIGPAQ-ELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFK 263 (345)
Q Consensus 195 ~~~~~~yDvIi~D~~~p~~~~~-~l~t~ef~~~v~r~LkpgGvlv~~~~s~~~~~~~~~~i~~~l~~~F~ 263 (345)
.++||+||++++-+.+... .-...++++..+++|++||-|-+-+... ......|++.|.
T Consensus 222 ---~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~-------l~y~~~L~~~Fg 281 (300)
T COG2813 222 ---EGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRH-------LPYEKKLKELFG 281 (300)
T ss_pred ---cccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCC-------CChHHHHHHhcC
Confidence 3489999998877655431 1123589999999999999775544321 123355777883
No 53
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.28 E-value=1.1e-10 Score=112.07 Aligned_cols=155 Identities=15% Similarity=0.167 Sum_probs=103.2
Q ss_pred CCCceEEEEEEcCcceEEEEcCeEeeeccchhHH-HHHHHhcccccCCCCceEEEEeccchHHHHHHHhcCCCcEEEEEE
Q 019187 79 SDYQNVMVFQSSTYGKVLILDGVIQLTERDECAY-QEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICE 157 (345)
Q Consensus 79 s~yq~i~v~e~~~~g~~L~lDg~~q~~~~de~~Y-~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VE 157 (345)
-|.|+|.=.. ..+|.-+.++..+.+..++.... ...+.. ......+.+|||+|||+|.++..+++..+..+|+++|
T Consensus 88 ~Pl~yi~g~~-~F~g~~f~v~~~vlipr~~te~lv~~~l~~--~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~V~avD 164 (307)
T PRK11805 88 IPAAYLTNEA-WFCGLEFYVDERVLVPRSPIAELIEDGFAP--WLEDPPVTRILDLCTGSGCIAIACAYAFPDAEVDAVD 164 (307)
T ss_pred ccHHHHcCcc-eEcCcEEEECCCCcCCCCchHHHHHHHHHH--HhccCCCCEEEEEechhhHHHHHHHHHCCCCEEEEEe
Confidence 4777774332 23566777776555544432111 112211 1111123789999999999999999876667999999
Q ss_pred CCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEEEcCCCCC-------------CCcccc------
Q 019187 158 IDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPI-------------GPAQEL------ 218 (345)
Q Consensus 158 id~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi~D~~~p~-------------~~~~~l------ 218 (345)
+|+.+++.|++++... ++ ..+++++.+|+.+.+. .++||+|++|++.-. .+...|
T Consensus 165 is~~al~~A~~n~~~~--~l-~~~i~~~~~D~~~~l~---~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dG 238 (307)
T PRK11805 165 ISPDALAVAEINIERH--GL-EDRVTLIESDLFAALP---GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDG 238 (307)
T ss_pred CCHHHHHHHHHHHHHh--CC-CCcEEEEECchhhhCC---CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCch
Confidence 9999999999997654 22 2479999999876543 457999999864311 011111
Q ss_pred --CcHHHHHHHHhccCCCcEEEEecc
Q 019187 219 --FEKPFFESVAKALRPGGVVSTQAE 242 (345)
Q Consensus 219 --~t~ef~~~v~r~LkpgGvlv~~~~ 242 (345)
+...+++.+.+.|+|||.+++..+
T Consensus 239 l~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 239 LDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 124678888999999999998654
No 54
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.27 E-value=3.2e-11 Score=109.68 Aligned_cols=101 Identities=20% Similarity=0.253 Sum_probs=79.6
Q ss_pred CCCceEEEEeccchHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccE
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHSS-VEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~~-~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDv 203 (345)
....+|||||||+|..+..+++..+ ..+|++||+++.+++.|++++... .-.+++++.+|+.+.+.. .++||+
T Consensus 76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~----g~~~v~~~~~d~~~~~~~--~~~fD~ 149 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKL----GLDNVIVIVGDGTQGWEP--LAPYDR 149 (215)
T ss_pred CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHC----CCCCeEEEECCcccCCcc--cCCCCE
Confidence 3567999999999999999888742 346999999999999999988764 234799999998765432 468999
Q ss_pred EEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 204 Ii~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
|+++...+ ...+.+.+.|+|||++++..
T Consensus 150 Ii~~~~~~----------~~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 150 IYVTAAGP----------KIPEALIDQLKEGGILVMPV 177 (215)
T ss_pred EEEcCCcc----------cccHHHHHhcCcCcEEEEEE
Confidence 99886533 22355778999999999853
No 55
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.27 E-value=2.2e-11 Score=114.21 Aligned_cols=106 Identities=20% Similarity=0.295 Sum_probs=86.1
Q ss_pred CCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
....+|||||||.|++++.++++. ..+|++|++|++..+.+++.+... ++. .+++++..|-+++ .++||-|
T Consensus 71 ~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~--gl~-~~v~v~l~d~rd~-----~e~fDrI 141 (283)
T COG2230 71 KPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAAR--GLE-DNVEVRLQDYRDF-----EEPFDRI 141 (283)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHc--CCC-cccEEEecccccc-----cccccee
Confidence 457899999999999999999987 469999999999999999977654 444 4899999996665 4569999
Q ss_pred EE-cCCCCCCCccccCcHHHHHHHHhccCCCcEEEEecc
Q 019187 205 IV-DSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAE 242 (345)
Q Consensus 205 i~-D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~ 242 (345)
++ ..+.+.+... -..||+.+++.|+|||++++++.
T Consensus 142 vSvgmfEhvg~~~---~~~ff~~~~~~L~~~G~~llh~I 177 (283)
T COG2230 142 VSVGMFEHVGKEN---YDDFFKKVYALLKPGGRMLLHSI 177 (283)
T ss_pred eehhhHHHhCccc---HHHHHHHHHhhcCCCceEEEEEe
Confidence 95 4444444322 26899999999999999999873
No 56
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.27 E-value=9.6e-11 Score=104.93 Aligned_cols=105 Identities=22% Similarity=0.280 Sum_probs=83.0
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
...+|||+|||+|.++.++++..+..+|+++|+|+++++.+++++... .-.+++++.+|+.+.+... ...+|.|+
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~----~~~~v~~~~~d~~~~~~~~-~~~~d~v~ 114 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRF----GVKNVEVIEGSAPECLAQL-APAPDRVC 114 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh----CCCCeEEEECchHHHHhhC-CCCCCEEE
Confidence 457999999999999999987644579999999999999999987654 2247999999987755433 34578888
Q ss_pred EcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEeccc
Q 019187 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAES 243 (345)
Q Consensus 206 ~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s 243 (345)
++...+ -..+++.+.+.|+|||.+++...+
T Consensus 115 ~~~~~~--------~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 115 IEGGRP--------IKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred EECCcC--------HHHHHHHHHHhcCCCeEEEEEeec
Confidence 764321 257899999999999999987543
No 57
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.27 E-value=3.6e-11 Score=112.71 Aligned_cols=109 Identities=17% Similarity=0.096 Sum_probs=81.6
Q ss_pred CCCceEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccE
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRH-SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~-~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDv 203 (345)
....+|||||||+|.++..+++. ++..+|++||++++|++.|++..+.... ...++++++.+|+.+.- .++++||+
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~-~~~~~i~~~~~d~~~lp--~~~~sfD~ 148 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK-SCYKNIEWIEGDATDLP--FDDCYFDA 148 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh-ccCCCeEEEEcccccCC--CCCCCEeE
Confidence 34679999999999999988876 3346899999999999999876542110 12357999999987642 23678999
Q ss_pred EEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEe
Q 019187 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (345)
Q Consensus 204 Ii~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~ 240 (345)
|++...-...+. ...++++++|+|||||.+++.
T Consensus 149 V~~~~~l~~~~d----~~~~l~ei~rvLkpGG~l~i~ 181 (261)
T PLN02233 149 ITMGYGLRNVVD----RLKAMQEMYRVLKPGSRVSIL 181 (261)
T ss_pred EEEecccccCCC----HHHHHHHHHHHcCcCcEEEEE
Confidence 997543322221 257899999999999998774
No 58
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.26 E-value=2.1e-10 Score=103.28 Aligned_cols=146 Identities=12% Similarity=0.115 Sum_probs=97.2
Q ss_pred eEEEEEEcCcceEEEEcCeEeeeccchhHHHHHHHhcccccCCCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHH
Q 019187 83 NVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMV 162 (345)
Q Consensus 83 ~i~v~e~~~~g~~L~lDg~~q~~~~de~~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~v 162 (345)
.+.|+-.+..|+.|..-.........+..+..++..+.. .....+|||+|||+|.++.+++... ..+|++||+|+..
T Consensus 12 ~mrIi~g~~~g~~l~~~~~~~~Rp~~d~v~e~l~~~l~~--~~~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a 88 (199)
T PRK10909 12 QIRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAP--VIVDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAV 88 (199)
T ss_pred CEEEEeeccCCCEeCCCCCCCcCcCCHHHHHHHHHHHhh--hcCCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHH
Confidence 366666666677665521111111112233334444321 1245699999999999999866553 4699999999999
Q ss_pred HHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEEEcCCCCCCCccccCcHHHHHHHHh--ccCCCcEEEEe
Q 019187 163 VDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAK--ALRPGGVVSTQ 240 (345)
Q Consensus 163 i~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r--~LkpgGvlv~~ 240 (345)
++.+++++... +. .+++++.+|+.+++... .++||+|++|++...+. ..+.++.+.+ .|+|+|++++.
T Consensus 89 ~~~a~~Nl~~~--~~--~~v~~~~~D~~~~l~~~-~~~fDlV~~DPPy~~g~-----~~~~l~~l~~~~~l~~~~iv~ve 158 (199)
T PRK10909 89 AQQLIKNLATL--KA--GNARVVNTNALSFLAQP-GTPHNVVFVDPPFRKGL-----LEETINLLEDNGWLADEALIYVE 158 (199)
T ss_pred HHHHHHHHHHh--CC--CcEEEEEchHHHHHhhc-CCCceEEEECCCCCCCh-----HHHHHHHHHHCCCcCCCcEEEEE
Confidence 99999988765 22 37999999999988543 45799999998743221 2345565555 37999999986
Q ss_pred c
Q 019187 241 A 241 (345)
Q Consensus 241 ~ 241 (345)
.
T Consensus 159 ~ 159 (199)
T PRK10909 159 S 159 (199)
T ss_pred e
Confidence 4
No 59
>PRK04266 fibrillarin; Provisional
Probab=99.26 E-value=2.5e-10 Score=104.80 Aligned_cols=103 Identities=16% Similarity=0.143 Sum_probs=78.1
Q ss_pred CCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHH--hhCCCCCcc
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFL--KAVPEGTYD 202 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l--~~~~~~~yD 202 (345)
....+|||+|||+|.++..+++..+..+|+++|+++.+++.+.+.... .+++..+.+|+.... ... .++||
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~------~~nv~~i~~D~~~~~~~~~l-~~~~D 143 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE------RKNIIPILADARKPERYAHV-VEKVD 143 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh------cCCcEEEECCCCCcchhhhc-cccCC
Confidence 345799999999999999999874445899999999999877665442 246889999976421 112 35699
Q ss_pred EEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEe
Q 019187 203 AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (345)
Q Consensus 203 vIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~ 240 (345)
+|++|..+|+. ...+++.+++.|||||.+++.
T Consensus 144 ~i~~d~~~p~~------~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 144 VIYQDVAQPNQ------AEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred EEEECCCChhH------HHHHHHHHHHhcCCCcEEEEE
Confidence 99998765431 134688999999999999884
No 60
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=3.6e-11 Score=107.94 Aligned_cols=100 Identities=26% Similarity=0.380 Sum_probs=83.2
Q ss_pred CCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
....+||+||||+|..+.-+++. +.+|+.+|++++..+.|++++... .-.+|.++++|+...... ...||.|
T Consensus 71 ~~g~~VLEIGtGsGY~aAvla~l--~~~V~siEr~~~L~~~A~~~L~~l----g~~nV~v~~gDG~~G~~~--~aPyD~I 142 (209)
T COG2518 71 KPGDRVLEIGTGSGYQAAVLARL--VGRVVSIERIEELAEQARRNLETL----GYENVTVRHGDGSKGWPE--EAPYDRI 142 (209)
T ss_pred CCCCeEEEECCCchHHHHHHHHH--hCeEEEEEEcHHHHHHHHHHHHHc----CCCceEEEECCcccCCCC--CCCcCEE
Confidence 45689999999999999999998 459999999999999999998865 334599999999887663 5889999
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEecc
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAE 242 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~ 242 (345)
++.+..+.-| +.+.+.|++||++++-.+
T Consensus 143 ~Vtaaa~~vP----------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 143 IVTAAAPEVP----------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred EEeeccCCCC----------HHHHHhcccCCEEEEEEc
Confidence 9987766555 345667999999998443
No 61
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.25 E-value=4.8e-11 Score=108.49 Aligned_cols=101 Identities=22% Similarity=0.305 Sum_probs=79.1
Q ss_pred CCCceEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccE
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHS-SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~-~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDv 203 (345)
....+|||||||+|..+..+++.. ...+|+++|+++++++.|++++... .-.+++++.+|+..... +.+.||+
T Consensus 75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~----g~~~v~~~~gd~~~~~~--~~~~fD~ 148 (212)
T PRK13942 75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKL----GYDNVEVIVGDGTLGYE--ENAPYDR 148 (212)
T ss_pred CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc----CCCCeEEEECCcccCCC--cCCCcCE
Confidence 356799999999999999888763 3468999999999999999988754 23479999999876543 2578999
Q ss_pred EEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 204 Ii~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
|+++..-+ +..+.+.+.|+|||++++..
T Consensus 149 I~~~~~~~----------~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 149 IYVTAAGP----------DIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred EEECCCcc----------cchHHHHHhhCCCcEEEEEE
Confidence 99876432 22345677899999999843
No 62
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.25 E-value=3.4e-11 Score=111.77 Aligned_cols=106 Identities=19% Similarity=0.295 Sum_probs=89.0
Q ss_pred CCCceEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCC-----C
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRH-SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVP-----E 198 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~-~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~-----~ 198 (345)
.++++||+||++.|..+.++++. ++..+|+.+|+|++..+.|+++|... ++. .+++++.+|+.+.+.... .
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~a--g~~-~~I~~~~G~a~e~L~~l~~~~~~~ 154 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKA--GVA-HKIDFREGPALPVLDQMIEDGKYH 154 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHC--CCC-CceEEEeccHHHHHHHHHhccccC
Confidence 46899999999999999998875 45679999999999999999998764 443 699999999999987641 2
Q ss_pred CCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEe
Q 019187 199 GTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (345)
Q Consensus 199 ~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~ 240 (345)
++||+|++|+.... ...+|+.+.+.|+|||++++.
T Consensus 155 ~~fD~iFiDadK~~-------Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 155 GTFDFIFVDADKDN-------YINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred CcccEEEecCCHHH-------hHHHHHHHHHhcCCCeEEEEc
Confidence 68999999976332 248899999999999999874
No 63
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.24 E-value=1.2e-10 Score=107.36 Aligned_cols=108 Identities=16% Similarity=0.170 Sum_probs=82.5
Q ss_pred CCCceEEEEeccchHHHHHHHhc--CCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCcc
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRH--SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYD 202 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~--~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yD 202 (345)
+...+|||||||+|..+..++++ .+..+++++|+++.+++.|++++... . ...+++++.+|+.++. ...+|
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~--~-~~~~v~~~~~d~~~~~----~~~~d 124 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAY--H-SEIPVEILCNDIRHVE----IKNAS 124 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc--C-CCCCeEEEECChhhCC----CCCCC
Confidence 35569999999999999998875 24578999999999999999987643 1 2347999999977652 34589
Q ss_pred EEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 203 AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 203 vIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
+|++...-+..+... ...+++.++++|+|||.+++..
T Consensus 125 ~v~~~~~l~~~~~~~--~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 125 MVILNFTLQFLPPED--RIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred EEeeecchhhCCHHH--HHHHHHHHHHhcCCCeEEEEee
Confidence 988765443332211 2579999999999999999864
No 64
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.24 E-value=2.6e-11 Score=114.41 Aligned_cols=107 Identities=21% Similarity=0.383 Sum_probs=77.1
Q ss_pred CCCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccE
Q 019187 124 IPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (345)
Q Consensus 124 ~~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDv 203 (345)
.....+|||||||.|+++..+++..+ .+|++|.++++..+.+++.+... ++. .++++..+|.+++ ..+||.
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~~g-~~v~gitlS~~Q~~~a~~~~~~~--gl~-~~v~v~~~D~~~~-----~~~fD~ 130 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAERYG-CHVTGITLSEEQAEYARERIREA--GLE-DRVEVRLQDYRDL-----PGKFDR 130 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCS--TSS-STEEEEES-GGG--------S-SE
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcC-cEEEEEECCHHHHHHHHHHHHhc--CCC-CceEEEEeecccc-----CCCCCE
Confidence 34567999999999999999998864 58999999999999999887754 343 4899999996654 458999
Q ss_pred EEE-cCCCCCCCccccCcHHHHHHHHhccCCCcEEEEecc
Q 019187 204 VIV-DSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAE 242 (345)
Q Consensus 204 Ii~-D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~ 242 (345)
|++ ....+.+.. .-..||+.+.+.|+|||++++|..
T Consensus 131 IvSi~~~Ehvg~~---~~~~~f~~~~~~LkpgG~~~lq~i 167 (273)
T PF02353_consen 131 IVSIEMFEHVGRK---NYPAFFRKISRLLKPGGRLVLQTI 167 (273)
T ss_dssp EEEESEGGGTCGG---GHHHHHHHHHHHSETTEEEEEEEE
T ss_pred EEEEechhhcChh---HHHHHHHHHHHhcCCCcEEEEEec
Confidence 995 333333321 126899999999999999999863
No 65
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.24 E-value=2.1e-10 Score=106.77 Aligned_cols=131 Identities=19% Similarity=0.224 Sum_probs=87.0
Q ss_pred CCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
...++|||||||+|.++..+++.. ..+|+++|+|+.+++.|++++... +.. .++.+..+| .+||+|
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g-~~~v~giDis~~~l~~A~~n~~~~--~~~-~~~~~~~~~----------~~fD~V 183 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLG-AKKVLAVDIDPQAVEAARENAELN--GVE-LNVYLPQGD----------LKADVI 183 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHc--CCC-ceEEEccCC----------CCcCEE
Confidence 356899999999999998877764 457999999999999999987653 111 233333222 279999
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEeccchhhhhhHHHHHHHHHHhh-cCCcceEEEEEEeecCCCcEEE
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQI-FKGSVNYAWTTVPTYPSGVIGF 283 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s~~~~~~~~~~i~~~l~~~-F~~~v~~~~~~vP~y~~g~w~~ 283 (345)
+++..... ...+++.+.++|+|||++++.... ......+.+.+++. |. ...+- ..+.|..
T Consensus 184 vani~~~~-------~~~l~~~~~~~LkpgG~lilsgi~----~~~~~~v~~~l~~~Gf~------~~~~~--~~~~W~~ 244 (250)
T PRK00517 184 VANILANP-------LLELAPDLARLLKPGGRLILSGIL----EEQADEVLEAYEEAGFT------LDEVL--ERGEWVA 244 (250)
T ss_pred EEcCcHHH-------HHHHHHHHHHhcCCCcEEEEEECc----HhhHHHHHHHHHHCCCE------EEEEE--EeCCEEE
Confidence 98754211 246889999999999999986422 12234455555543 31 11222 2367877
Q ss_pred EEEec
Q 019187 284 MLCST 288 (345)
Q Consensus 284 ~~ask 288 (345)
+++.|
T Consensus 245 ~~~~~ 249 (250)
T PRK00517 245 LVGKK 249 (250)
T ss_pred EEEEe
Confidence 76654
No 66
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.24 E-value=5.4e-11 Score=106.85 Aligned_cols=124 Identities=23% Similarity=0.317 Sum_probs=93.5
Q ss_pred eEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhC-CCCCccEEEEc
Q 019187 129 KVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV-PEGTYDAVIVD 207 (345)
Q Consensus 129 ~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~-~~~~yDvIi~D 207 (345)
-+||||||.|..+.++++..+...+.++|+....+..+.+..... .-+++.++.+|+..++... ++++.|-|.+.
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~----~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~ 95 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKR----GLKNVRFLRGDARELLRRLFPPGSVDRIYIN 95 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHH----TTSSEEEEES-CTTHHHHHSTTTSEEEEEEE
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhh----cccceEEEEccHHHHHhhcccCCchheEEEe
Confidence 789999999999999998767889999999999888877765543 4468999999999987654 35899999999
Q ss_pred CCCCCCC----ccccCcHHHHHHHHhccCCCcEEEEeccchhhhhhHHHHHHHHHHh
Q 019187 208 SSDPIGP----AQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQ 260 (345)
Q Consensus 208 ~~~p~~~----~~~l~t~ef~~~v~r~LkpgGvlv~~~~s~~~~~~~~~~i~~~l~~ 260 (345)
.+||+.. ...+.+.+|++.++++|+|||.+.+.+.+.. .+..+++.+..
T Consensus 96 FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~----y~~~~~~~~~~ 148 (195)
T PF02390_consen 96 FPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEE----YAEWMLEQFEE 148 (195)
T ss_dssp S-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HH----HHHHHHHHHHH
T ss_pred CCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHH----HHHHHHHHHHh
Confidence 9999854 3568999999999999999999999875543 33444455544
No 67
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=7.4e-11 Score=108.28 Aligned_cols=118 Identities=30% Similarity=0.446 Sum_probs=97.6
Q ss_pred CCCceEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccE
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRH-SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~-~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDv 203 (345)
....+||+.|.|+|.++..+++. .+..+|+.+|++++..+.|++++... ++.+ ++++..+|..+... .+.||+
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~--~l~d-~v~~~~~Dv~~~~~---~~~vDa 166 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF--GLGD-RVTLKLGDVREGID---EEDVDA 166 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHh--cccc-ceEEEecccccccc---ccccCE
Confidence 35679999999999999999975 45579999999999999999999876 5554 59999999888765 358999
Q ss_pred EEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEeccchhhhhhHHHHHHHHHHhh
Q 019187 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQI 261 (345)
Q Consensus 204 Ii~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s~~~~~~~~~~i~~~l~~~ 261 (345)
|++|.++|| ++++.++++|+|||.+++.+ |+ -+..+.++..+++.
T Consensus 167 v~LDmp~PW---------~~le~~~~~Lkpgg~~~~y~--P~--veQv~kt~~~l~~~ 211 (256)
T COG2519 167 VFLDLPDPW---------NVLEHVSDALKPGGVVVVYS--PT--VEQVEKTVEALRER 211 (256)
T ss_pred EEEcCCChH---------HHHHHHHHHhCCCcEEEEEc--CC--HHHHHHHHHHHHhc
Confidence 999999985 78999999999999999865 32 24555666667665
No 68
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.23 E-value=2e-12 Score=102.73 Aligned_cols=99 Identities=16% Similarity=0.301 Sum_probs=60.9
Q ss_pred EEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEEEcCCC
Q 019187 131 LVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSD 210 (345)
Q Consensus 131 L~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi~D~~~ 210 (345)
||||||+|..+..++++.+..+++++|+++.+++.+++.+... ...+......+..+.......++||+|++-..-
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl 76 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAEL----GNDNFERLRFDVLDLFDYDPPESFDLVVASNVL 76 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHC----T---EEEEE--SSS---CCC----SEEEEE-TT
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc----CCcceeEEEeecCChhhcccccccceehhhhhH
Confidence 7999999999999998867789999999999999998887754 222333333333333322223699999975443
Q ss_pred CCCCccccCcHHHHHHHHhccCCCcEE
Q 019187 211 PIGPAQELFEKPFFESVAKALRPGGVV 237 (345)
Q Consensus 211 p~~~~~~l~t~ef~~~v~r~LkpgGvl 237 (345)
+.. .. ..++++.+++.|+|||+|
T Consensus 77 ~~l--~~--~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 77 HHL--ED--IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S----S---HHHHHHHHTTT-TSS-EE
T ss_pred hhh--hh--HHHHHHHHHHHcCCCCCC
Confidence 322 11 358999999999999986
No 69
>PRK14967 putative methyltransferase; Provisional
Probab=99.22 E-value=2.4e-10 Score=104.54 Aligned_cols=106 Identities=15% Similarity=0.214 Sum_probs=80.2
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
...+|||+|||+|.++..+++.. ..+|+++|+|+.+++.+++++... ..+++++.+|..+.+. +++||+|+
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~-----~~~~~~~~~d~~~~~~---~~~fD~Vi 106 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLA-----GVDVDVRRGDWARAVE---FRPFDVVV 106 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHh-----CCeeEEEECchhhhcc---CCCeeEEE
Confidence 45799999999999999988873 458999999999999999987643 2358899999876543 57899999
Q ss_pred EcCCCCCCCcc-----------------ccCcHHHHHHHHhccCCCcEEEEe
Q 019187 206 VDSSDPIGPAQ-----------------ELFEKPFFESVAKALRPGGVVSTQ 240 (345)
Q Consensus 206 ~D~~~p~~~~~-----------------~l~t~ef~~~v~r~LkpgGvlv~~ 240 (345)
++++....... ......+++.+.+.|+|||++++.
T Consensus 107 ~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~ 158 (223)
T PRK14967 107 SNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV 158 (223)
T ss_pred ECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 98643211100 001246788899999999999874
No 70
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.22 E-value=7.9e-11 Score=120.13 Aligned_cols=156 Identities=12% Similarity=0.166 Sum_probs=105.8
Q ss_pred CCCceEEEEEEcCcceEEEEcCeEeeeccchhHHHHH-HHhcc------c-------------c--cCCCCceEEEEecc
Q 019187 79 SDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEM-ITHLP------L-------------C--SIPNPKKVLVIGGG 136 (345)
Q Consensus 79 s~yq~i~v~e~~~~g~~L~lDg~~q~~~~de~~Y~e~-l~~l~------l-------------~--~~~~~~~VL~IG~G 136 (345)
-|.|+|.=. ...+|.-+.+|-.+-+..++.-.--+. +..+. . . ....+.+|||||||
T Consensus 70 ePlqYI~G~-~~F~g~~f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~G 148 (506)
T PRK01544 70 EPIAYITGV-KEFYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTG 148 (506)
T ss_pred CCHHHHhCc-CEEcCcEEEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCc
Confidence 477887443 345788899998888877763322221 11111 0 0 01134689999999
Q ss_pred chHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEEEcCCCCC----
Q 019187 137 DGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPI---- 212 (345)
Q Consensus 137 ~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi~D~~~p~---- 212 (345)
+|.++..+++..+..+|+++|+|+.+++.|++++... ++ ..+++++.+|..+.+. .++||+|+++++--.
T Consensus 149 sG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~--~l-~~~v~~~~~D~~~~~~---~~~fDlIvsNPPYi~~~~~ 222 (506)
T PRK01544 149 SGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKY--EV-TDRIQIIHSNWFENIE---KQKFDFIVSNPPYISHSEK 222 (506)
T ss_pred hhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHc--CC-ccceeeeecchhhhCc---CCCccEEEECCCCCCchhh
Confidence 9999999887655679999999999999999987543 22 2489999999766542 468999999865211
Q ss_pred ----------CCccccC--------cHHHHHHHHhccCCCcEEEEec
Q 019187 213 ----------GPAQELF--------EKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 213 ----------~~~~~l~--------t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
.|...|+ -..+++.+.+.|+|||.+++..
T Consensus 223 ~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 223 SEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred hhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 0111122 1345667788999999999854
No 71
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.22 E-value=7.7e-11 Score=106.53 Aligned_cols=100 Identities=24% Similarity=0.308 Sum_probs=78.3
Q ss_pred CCceEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHS-SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~-~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
...+|||||||+|..+..+++.. ...+|+++|+++.+++.|++++... ++ ..+++++.+|+.+.+.. .++||+|
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~--~~-~~~v~~~~~d~~~~~~~--~~~fD~I 146 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERL--GY-WGVVEVYHGDGKRGLEK--HAPFDAI 146 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc--CC-CCcEEEEECCcccCCcc--CCCccEE
Confidence 45799999999999998888763 2458999999999999999987653 22 23699999998776542 4689999
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEe
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~ 240 (345)
+++...+ .+.+.+.+.|+|||++++.
T Consensus 147 i~~~~~~----------~~~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 147 IVTAAAS----------TIPSALVRQLKDGGVLVIP 172 (205)
T ss_pred EEccCcc----------hhhHHHHHhcCcCcEEEEE
Confidence 9886532 2335678899999999874
No 72
>PLN02244 tocopherol O-methyltransferase
Probab=99.22 E-value=6e-11 Score=115.31 Aligned_cols=107 Identities=20% Similarity=0.373 Sum_probs=82.4
Q ss_pred CCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
..+.+|||||||+|.+++.+++.. ..+|++||+++.+++.|++..... +. .++++++.+|+.+.- .++++||+|
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~--g~-~~~v~~~~~D~~~~~--~~~~~FD~V 190 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQ--GL-SDKVSFQVADALNQP--FEDGQFDLV 190 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhc--CC-CCceEEEEcCcccCC--CCCCCccEE
Confidence 356799999999999999999865 458999999999999999876532 11 347999999987642 236889999
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
++.......+. ...++++++++|||||.+++..
T Consensus 191 ~s~~~~~h~~d----~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 191 WSMESGEHMPD----KRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred EECCchhccCC----HHHHHHHHHHHcCCCcEEEEEE
Confidence 97433221111 2579999999999999998854
No 73
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.21 E-value=1.8e-10 Score=101.65 Aligned_cols=105 Identities=18% Similarity=0.235 Sum_probs=80.2
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
++++|||+|||+|.++..+++... +|+++|+++.+++.+++++... ..+++++.+|..+.. .++||+|+
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~~d~~~~~----~~~fD~Vi 87 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLN-----NVGLDVVMTDLFKGV----RGKFDVIL 87 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHc-----CCceEEEEccccccc----CCcccEEE
Confidence 457899999999999999988743 8999999999999999987643 236888999976542 45899999
Q ss_pred EcCCCCCCCc-----------------cccCcHHHHHHHHhccCCCcEEEEec
Q 019187 206 VDSSDPIGPA-----------------QELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 206 ~D~~~p~~~~-----------------~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
++.+...... .......+++.+.+.|+|||.+++..
T Consensus 88 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~ 140 (179)
T TIGR00537 88 FNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ 140 (179)
T ss_pred ECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence 8865321110 00013578999999999999988754
No 74
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.21 E-value=4.6e-10 Score=105.28 Aligned_cols=141 Identities=18% Similarity=0.291 Sum_probs=95.5
Q ss_pred cceEEEEcCeEeeeccchhHHHHHHHhcccccCCCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhccc
Q 019187 92 YGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFP 171 (345)
Q Consensus 92 ~g~~L~lDg~~q~~~~de~~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~ 171 (345)
++..+.++..+....++.....+.+... .....+.+|||+|||+|.++..+++..+..+++++|+++.+++.|++++.
T Consensus 76 ~~~~~~~~~~~lipr~~te~l~~~~~~~--~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~ 153 (275)
T PRK09328 76 WGLDFKVSPGVLIPRPETEELVEWALEA--LLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK 153 (275)
T ss_pred cCcEEEECCCceeCCCCcHHHHHHHHHh--ccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Confidence 4555555544444444433333333211 11234679999999999999999988666799999999999999999876
Q ss_pred ccccCCCCCCEEEEEechHhHHhhCCCCCccEEEEcCCCCCC--------------CccccC--------cHHHHHHHHh
Q 019187 172 DVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIG--------------PAQELF--------EKPFFESVAK 229 (345)
Q Consensus 172 ~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi~D~~~p~~--------------~~~~l~--------t~ef~~~v~r 229 (345)
.. ...+++++.+|..+.+. .++||+|+++++.-.. +...++ -..+++.+.+
T Consensus 154 ~~----~~~~i~~~~~d~~~~~~---~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~ 226 (275)
T PRK09328 154 HG----LGARVEFLQGDWFEPLP---GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPR 226 (275)
T ss_pred hC----CCCcEEEEEccccCcCC---CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHH
Confidence 11 23579999999754332 4789999987653110 001111 1467788889
Q ss_pred ccCCCcEEEEec
Q 019187 230 ALRPGGVVSTQA 241 (345)
Q Consensus 230 ~LkpgGvlv~~~ 241 (345)
.|+|||.+++..
T Consensus 227 ~Lk~gG~l~~e~ 238 (275)
T PRK09328 227 YLKPGGWLLLEI 238 (275)
T ss_pred hcccCCEEEEEE
Confidence 999999999865
No 75
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.20 E-value=1e-10 Score=106.48 Aligned_cols=103 Identities=18% Similarity=0.279 Sum_probs=82.1
Q ss_pred CCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
..+++|||||||+|..+..+++..+..+++++|+++.+++.+++.++ ++++++.+|..+... ++++||+|
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~--------~~~~~~~~d~~~~~~--~~~~fD~v 102 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS--------ENVQFICGDAEKLPL--EDSSFDLI 102 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC--------CCCeEEecchhhCCC--CCCceeEE
Confidence 34679999999999999999987656789999999999999988763 368899999776532 35789999
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
++....+.... ...+++.+++.|+|||.+++..
T Consensus 103 i~~~~l~~~~~----~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 103 VSNLALQWCDD----LSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred EEhhhhhhccC----HHHHHHHHHHHcCCCcEEEEEe
Confidence 98654332211 2578999999999999999864
No 76
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.20 E-value=2.6e-10 Score=108.13 Aligned_cols=155 Identities=14% Similarity=0.168 Sum_probs=102.6
Q ss_pred CCCceEEEEEEcCcceEEEEcCeEeeeccchhHHHH-HHHhcccccCCCCceEEEEeccchHHHHHHHhcCCCcEEEEEE
Q 019187 79 SDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQE-MITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICE 157 (345)
Q Consensus 79 s~yq~i~v~e~~~~g~~L~lDg~~q~~~~de~~Y~e-~l~~l~l~~~~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VE 157 (345)
-|.|+|.=.. ..+|+-+.++..+.+..++....-+ .+..+. ......+|||+|||+|.++..+++..+..+|+++|
T Consensus 69 ~pl~yi~g~~-~f~g~~f~v~~~vliPr~ete~lv~~~l~~~~--~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avD 145 (284)
T TIGR00536 69 VPVAYLLGSK-EFYGLEFFVNEHVLIPRPETEELVEKALASLI--SQNPILHILDLGTGSGCIALALAYEFPNAEVIAVD 145 (284)
T ss_pred CCHHHHhCcc-eEcCeEEEECCCCcCCCCccHHHHHHHHHHhh--hcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEE
Confidence 4666663332 3356777777665555444322222 222211 11122699999999999999999876567999999
Q ss_pred CCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEEEcCCCCCC-------------Ccccc------
Q 019187 158 IDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIG-------------PAQEL------ 218 (345)
Q Consensus 158 id~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi~D~~~p~~-------------~~~~l------ 218 (345)
+++.+++.|+++.... ++ ..+++++.+|..+.+. ..+||+|++|++.-.. |...|
T Consensus 146 is~~al~~a~~n~~~~--~~-~~~v~~~~~d~~~~~~---~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dg 219 (284)
T TIGR00536 146 ISPDALAVAEENAEKN--QL-EHRVEFIQSNLFEPLA---GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDG 219 (284)
T ss_pred CCHHHHHHHHHHHHHc--CC-CCcEEEEECchhccCc---CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcH
Confidence 9999999999987643 22 2369999999766432 3479999998643110 00011
Q ss_pred --CcHHHHHHHHhccCCCcEEEEecc
Q 019187 219 --FEKPFFESVAKALRPGGVVSTQAE 242 (345)
Q Consensus 219 --~t~ef~~~v~r~LkpgGvlv~~~~ 242 (345)
+...+++.+.+.|+|||++++..+
T Consensus 220 l~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 220 LNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 234677888899999999998654
No 77
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.20 E-value=1.1e-10 Score=123.51 Aligned_cols=114 Identities=16% Similarity=0.267 Sum_probs=89.9
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
+.++|||||||+|+++..+++. +..+|++||+|+.+++.|++++..+ +++..+++++.+|+.++++.. .++||+||
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~n--g~~~~~v~~i~~D~~~~l~~~-~~~fDlIi 613 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALN--GLSGRQHRLIQADCLAWLKEA-REQFDLIF 613 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHh--CCCccceEEEEccHHHHHHHc-CCCcCEEE
Confidence 4689999999999999999987 4568999999999999999998765 344358999999999999765 67899999
Q ss_pred EcCCCCCCCcc--ccC-----cHHHHHHHHhccCCCcEEEEeccc
Q 019187 206 VDSSDPIGPAQ--ELF-----EKPFFESVAKALRPGGVVSTQAES 243 (345)
Q Consensus 206 ~D~~~p~~~~~--~l~-----t~ef~~~v~r~LkpgGvlv~~~~s 243 (345)
+|++.-..... ..+ -.++++.+.++|+|||++++.+++
T Consensus 614 lDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~ 658 (702)
T PRK11783 614 IDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK 658 (702)
T ss_pred ECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 99764221100 110 145778888999999999886544
No 78
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.20 E-value=8.8e-11 Score=113.17 Aligned_cols=104 Identities=13% Similarity=0.123 Sum_probs=80.0
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
...+|||||||+|..+..+++. ..+|++||+++++++.|++++... . ...+++++++|+.++.. ++++||+|+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~--~-~~~~i~~~~~dae~l~~--~~~~FD~Vi 203 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMD--P-VTSTIEYLCTTAEKLAD--EGRKFDAVL 203 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhc--C-cccceeEEecCHHHhhh--ccCCCCEEE
Confidence 3469999999999999988875 468999999999999999875431 1 12479999999877543 257899999
Q ss_pred EcCCC-CCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 206 VDSSD-PIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 206 ~D~~~-p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
+-..- +... ...|++.++++|||||.+++..
T Consensus 204 ~~~vLeHv~d-----~~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 204 SLEVIEHVAN-----PAEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred EhhHHHhcCC-----HHHHHHHHHHHcCCCcEEEEEE
Confidence 73221 1111 2589999999999999999865
No 79
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.20 E-value=8.5e-11 Score=105.43 Aligned_cols=102 Identities=16% Similarity=0.092 Sum_probs=75.0
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
.+.+|||+|||+|..+..++++ ..+|+++|+++.+++.+++..... +-++++...|...+- . +++||+|+
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~-----~~~v~~~~~d~~~~~--~-~~~fD~I~ 99 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARE-----NLPLRTDAYDINAAA--L-NEDYDFIF 99 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHh-----CCCceeEeccchhcc--c-cCCCCEEE
Confidence 4679999999999999999987 358999999999999998876432 123677777764431 2 46799999
Q ss_pred EcCCCCCCCccccCcHHHHHHHHhccCCCcEEEE
Q 019187 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVST 239 (345)
Q Consensus 206 ~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~ 239 (345)
+...-....... ...+++.++++|+|||++++
T Consensus 100 ~~~~~~~~~~~~--~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 100 STVVFMFLQAGR--VPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred EecccccCCHHH--HHHHHHHHHHHhCCCcEEEE
Confidence 754332211111 25789999999999998544
No 80
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.19 E-value=1.3e-10 Score=109.13 Aligned_cols=105 Identities=25% Similarity=0.359 Sum_probs=80.3
Q ss_pred CCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
....+|||||||+|..++.+++.. ..+|+++|+++.+++.|++.+.. .++++++.+|+.+. ..++++||+|
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~------~~~i~~~~~D~~~~--~~~~~~FD~V 121 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD------KNKIEFEANDILKK--DFPENTFDMI 121 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc------CCceEEEECCcccC--CCCCCCeEEE
Confidence 356799999999999999988764 35899999999999999997653 35799999997642 1235789999
Q ss_pred EE-cCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 205 IV-DSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 205 i~-D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
++ +...+..... ...+++.++++|||||.+++..
T Consensus 122 ~s~~~l~h~~~~d---~~~~l~~i~r~LkPGG~lvi~d 156 (263)
T PTZ00098 122 YSRDAILHLSYAD---KKKLFEKCYKWLKPNGILLITD 156 (263)
T ss_pred EEhhhHHhCCHHH---HHHHHHHHHHHcCCCcEEEEEE
Confidence 97 3322221111 2579999999999999999854
No 81
>PLN03075 nicotianamine synthase; Provisional
Probab=99.18 E-value=2.1e-10 Score=108.76 Aligned_cols=109 Identities=18% Similarity=0.310 Sum_probs=81.7
Q ss_pred CCceEEEEeccchHHH-HHHH-hcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccE
Q 019187 126 NPKKVLVIGGGDGGVL-REVS-RHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~-~~ll-~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDv 203 (345)
.|++||+||||.|.++ ..++ ++.+..+++++|+|+++++.||+.+... .++ .++++++.+|+.+.... .++||+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~-~gL-~~rV~F~~~Da~~~~~~--l~~FDl 198 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSD-PDL-SKRMFFHTADVMDVTES--LKEYDV 198 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhc-cCc-cCCcEEEECchhhcccc--cCCcCE
Confidence 7899999999977443 3333 4666779999999999999999988531 123 35899999999875322 468999
Q ss_pred EEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 204 Ii~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
|++++--.+.... ..+.++.+++.|+|||++++.+
T Consensus 199 VF~~ALi~~dk~~---k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 199 VFLAALVGMDKEE---KVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred EEEeccccccccc---HHHHHHHHHHhcCCCcEEEEec
Confidence 9998422111111 2689999999999999999976
No 82
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.18 E-value=3.6e-10 Score=107.47 Aligned_cols=118 Identities=17% Similarity=0.210 Sum_probs=84.7
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
..++|||+|||+|.++..+++.. ..+|+++|+|+.+++.|++++... +. ..++.+..+|.... .+++||+|+
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g-~~~V~avDid~~al~~a~~n~~~n--~~-~~~~~~~~~~~~~~----~~~~fDlVv 230 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLG-AAKVVGIDIDPLAVESARKNAELN--QV-SDRLQVKLIYLEQP----IEGKADVIV 230 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHc--CC-CcceEEEecccccc----cCCCceEEE
Confidence 45899999999999999888774 569999999999999999987654 22 23566676662221 256899999
Q ss_pred EcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEeccchhhhhhHHHHHHHHHHhhc
Q 019187 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIF 262 (345)
Q Consensus 206 ~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s~~~~~~~~~~i~~~l~~~F 262 (345)
++.... . ...+++.+.++|+|||.+++..- . ......+.+.+++.|
T Consensus 231 an~~~~-----~--l~~ll~~~~~~LkpgG~li~sgi---~-~~~~~~v~~~~~~~f 276 (288)
T TIGR00406 231 ANILAE-----V--IKELYPQFSRLVKPGGWLILSGI---L-ETQAQSVCDAYEQGF 276 (288)
T ss_pred EecCHH-----H--HHHHHHHHHHHcCCCcEEEEEeC---c-HhHHHHHHHHHHccC
Confidence 875421 1 24789999999999999998531 1 223344555555445
No 83
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.18 E-value=8.2e-11 Score=107.13 Aligned_cols=104 Identities=19% Similarity=0.267 Sum_probs=79.6
Q ss_pred ceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEEEc
Q 019187 128 KKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVD 207 (345)
Q Consensus 128 ~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi~D 207 (345)
++|||||||+|..+..+++..+..+|+++|+++.+++.+++++... ++ ..+++++.+|..... . .++||+|++.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~--gl-~~~i~~~~~d~~~~~--~-~~~fD~I~~~ 74 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRAL--GL-QGRIRIFYRDSAKDP--F-PDTYDLVFGF 74 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc--CC-CcceEEEecccccCC--C-CCCCCEeehH
Confidence 4899999999999999988755568999999999999999987643 22 358999999964431 1 4689999963
Q ss_pred CCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 208 SSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 208 ~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
..-.... . ...+++.++++|+|||.+++..
T Consensus 75 ~~l~~~~--~--~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 75 EVIHHIK--D--KMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred HHHHhCC--C--HHHHHHHHHHHcCCCCEEEEEE
Confidence 2211111 1 2589999999999999999864
No 84
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.17 E-value=3.7e-10 Score=103.56 Aligned_cols=114 Identities=24% Similarity=0.299 Sum_probs=97.1
Q ss_pred ceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCC-CccEEEE
Q 019187 128 KKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEG-TYDAVIV 206 (345)
Q Consensus 128 ~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~-~yDvIi~ 206 (345)
.-+|+||||.|....++++..|...+.+||+...++..|-+..... +-+++.+++.||.+++.....+ +.|-|.+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~----~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i 125 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKEL----GLKNLRLLCGDAVEVLDYLIPDGSLDKIYI 125 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHc----CCCcEEEEcCCHHHHHHhcCCCCCeeEEEE
Confidence 4799999999999999999877789999999998888887776653 2238999999999999877554 9999999
Q ss_pred cCCCCCCCc----cccCcHHHHHHHHhccCCCcEEEEeccchh
Q 019187 207 DSSDPIGPA----QELFEKPFFESVAKALRPGGVVSTQAESIW 245 (345)
Q Consensus 207 D~~~p~~~~----~~l~t~ef~~~v~r~LkpgGvlv~~~~s~~ 245 (345)
..+|||... ..+.+.+|++.+.+.|+|||.|-+.+....
T Consensus 126 ~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~ 168 (227)
T COG0220 126 NFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEE 168 (227)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHH
Confidence 999999543 568899999999999999999999775543
No 85
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=1.4e-10 Score=109.75 Aligned_cols=138 Identities=17% Similarity=0.164 Sum_probs=91.3
Q ss_pred CCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
.++++|||+|||+|.++...++. +..+|.++||||..++.|+++...+.. . +.++.-..+..... ..++||+|
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kL-GA~~v~g~DiDp~AV~aa~eNa~~N~v--~-~~~~~~~~~~~~~~---~~~~~DvI 233 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKL-GAKKVVGVDIDPQAVEAARENARLNGV--E-LLVQAKGFLLLEVP---ENGPFDVI 233 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHc-CCceEEEecCCHHHHHHHHHHHHHcCC--c-hhhhcccccchhhc---ccCcccEE
Confidence 36889999999999999999988 477899999999999999998876511 1 12223333333322 24689999
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEeccchhhhhhHHHHHHHHHH-hhcCCcceEEEEEEeecCCCcEEE
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCR-QIFKGSVNYAWTTVPTYPSGVIGF 283 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s~~~~~~~~~~i~~~l~-~~F~~~v~~~~~~vP~y~~g~w~~ 283 (345)
+++.-.. . -..+...+++.|+|||.+++.. ... +....+.+.+. +-| ..++..-.+.|..
T Consensus 234 VANILA~-----v--l~~La~~~~~~lkpgg~lIlSG---Il~-~q~~~V~~a~~~~gf--------~v~~~~~~~eW~~ 294 (300)
T COG2264 234 VANILAE-----V--LVELAPDIKRLLKPGGRLILSG---ILE-DQAESVAEAYEQAGF--------EVVEVLEREEWVA 294 (300)
T ss_pred EehhhHH-----H--HHHHHHHHHHHcCCCceEEEEe---ehH-hHHHHHHHHHHhCCC--------eEeEEEecCCEEE
Confidence 9875321 1 2478899999999999999854 221 12333444442 233 2344444467866
Q ss_pred EEEec
Q 019187 284 MLCST 288 (345)
Q Consensus 284 ~~ask 288 (345)
+.+.+
T Consensus 295 i~~kr 299 (300)
T COG2264 295 IVGKR 299 (300)
T ss_pred EEEEc
Confidence 65543
No 86
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.15 E-value=1.5e-10 Score=105.11 Aligned_cols=113 Identities=23% Similarity=0.363 Sum_probs=82.9
Q ss_pred hHHHHHHHhcccccCCCCceEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEec
Q 019187 110 CAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRH-SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGD 188 (345)
Q Consensus 110 ~~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~ll~~-~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D 188 (345)
..+-.|+.++. .....+||+||+|+|..+..+++. .+..+|++||+++.+++.|++++... .-.+++++.+|
T Consensus 59 ~~~a~~l~~L~---l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~----~~~nv~~~~gd 131 (209)
T PF01135_consen 59 SMVARMLEALD---LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARL----GIDNVEVVVGD 131 (209)
T ss_dssp HHHHHHHHHTT---C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHH----TTHSEEEEES-
T ss_pred HHHHHHHHHHh---cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHh----ccCceeEEEcc
Confidence 34556666654 335679999999999999998876 23457999999999999999998865 33489999999
Q ss_pred hHhHHhhCCCCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 189 GVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 189 ~~~~l~~~~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
+..-... ...||.|++...-+..| ..+.+.|++||++++-.
T Consensus 132 g~~g~~~--~apfD~I~v~~a~~~ip----------~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 132 GSEGWPE--EAPFDRIIVTAAVPEIP----------EALLEQLKPGGRLVAPI 172 (209)
T ss_dssp GGGTTGG--G-SEEEEEESSBBSS------------HHHHHTEEEEEEEEEEE
T ss_pred hhhcccc--CCCcCEEEEeeccchHH----------HHHHHhcCCCcEEEEEE
Confidence 9876654 47899999886554222 44666799999999843
No 87
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.15 E-value=2.1e-10 Score=108.55 Aligned_cols=132 Identities=22% Similarity=0.280 Sum_probs=93.4
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhC-CCCCccEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV-PEGTYDAV 204 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~-~~~~yDvI 204 (345)
+.++||++-|-+|+.+..+++. +..+|+.||++...++.+++++..+ +++..+++++.+|++++++.. ..++||+|
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lN--g~~~~~~~~~~~Dvf~~l~~~~~~~~fD~I 199 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALN--GLDLDRHRFIQGDVFKFLKRLKKGGRFDLI 199 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHT--T-CCTCEEEEES-HHHHHHHHHHTT-EEEE
T ss_pred CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHc--CCCccceEEEecCHHHHHHHHhcCCCCCEE
Confidence 4689999999999999998776 5779999999999999999998775 455578999999999998743 25789999
Q ss_pred EEcCCCCCCCccccC--cHHHHHHHHhccCCCcEEEEeccchhhhhhHHHHHHHHHHh
Q 019187 205 IVDSSDPIGPAQELF--EKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQ 260 (345)
Q Consensus 205 i~D~~~p~~~~~~l~--t~ef~~~v~r~LkpgGvlv~~~~s~~~~~~~~~~i~~~l~~ 260 (345)
|+|++.-......+. -.+.++.+.++|+|||++++-++++....+.+.+.++....
T Consensus 200 IlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~~~a~ 257 (286)
T PF10672_consen 200 ILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVAEAAR 257 (286)
T ss_dssp EE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHHHHHH
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHHHhCc
Confidence 999875322111110 13467778899999999998888887777766555544433
No 88
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.15 E-value=1.9e-10 Score=106.68 Aligned_cols=99 Identities=17% Similarity=0.181 Sum_probs=77.6
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
.+.+|||||||+|.++..+++. ..+|+++|+++.+++.|++... ...++++|+.... .++++||+|+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~---------~~~~~~~d~~~~~--~~~~~fD~V~ 108 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDA---------ADHYLAGDIESLP--LATATFDLAW 108 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC---------CCCEEEcCcccCc--CCCCcEEEEE
Confidence 4679999999999999988876 3689999999999999998753 2357888876542 2357899999
Q ss_pred EcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 206 ~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
++..-.+... ...++..+.++|+|||.+++..
T Consensus 109 s~~~l~~~~d----~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 109 SNLAVQWCGN----LSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred ECchhhhcCC----HHHHHHHHHHHcCCCeEEEEEe
Confidence 8765433221 2578999999999999999854
No 89
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.15 E-value=7.6e-11 Score=112.08 Aligned_cols=135 Identities=20% Similarity=0.311 Sum_probs=89.7
Q ss_pred CCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
.+.++|||+|||+|.++...++. +..+|+++|+||..++.|+++...+ +..+ ++.+. . ..+...++||+|
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~kl-GA~~v~a~DiDp~Av~~a~~N~~~N--~~~~-~~~v~--~----~~~~~~~~~dlv 229 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKL-GAKKVVAIDIDPLAVEAARENAELN--GVED-RIEVS--L----SEDLVEGKFDLV 229 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHT-TBSEEEEEESSCHHHHHHHHHHHHT--T-TT-CEEES--C----TSCTCCS-EEEE
T ss_pred cCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHHc--CCCe-eEEEE--E----ecccccccCCEE
Confidence 35679999999999999999888 5789999999999999999998765 3444 66553 1 111225889999
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEeccchhhhhhHHHHHHHHHHhhcCCcceEEEEEEeecCCCcEEEE
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFM 284 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s~~~~~~~~~~i~~~l~~~F~~~v~~~~~~vP~y~~g~w~~~ 284 (345)
+.+..... -......+.++|+|||.+++.. ... +....+.+.+++-| .....-. .|.|..+
T Consensus 230 vANI~~~v-------L~~l~~~~~~~l~~~G~lIlSG---Il~-~~~~~v~~a~~~g~------~~~~~~~--~~~W~~l 290 (295)
T PF06325_consen 230 VANILADV-------LLELAPDIASLLKPGGYLILSG---ILE-EQEDEVIEAYKQGF------ELVEERE--EGEWVAL 290 (295)
T ss_dssp EEES-HHH-------HHHHHHHCHHHEEEEEEEEEEE---EEG-GGHHHHHHHHHTTE------EEEEEEE--ETTEEEE
T ss_pred EECCCHHH-------HHHHHHHHHHhhCCCCEEEEcc---ccH-HHHHHHHHHHHCCC------EEEEEEE--ECCEEEE
Confidence 98865321 1467778889999999999843 222 22234445554433 1122222 3678777
Q ss_pred EEec
Q 019187 285 LCST 288 (345)
Q Consensus 285 ~ask 288 (345)
.+.|
T Consensus 291 ~~~K 294 (295)
T PF06325_consen 291 VFKK 294 (295)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7765
No 90
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.15 E-value=2.7e-10 Score=101.25 Aligned_cols=125 Identities=18% Similarity=0.290 Sum_probs=87.2
Q ss_pred CCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
+.-.++|++|||.|.++..|+.+ ..+++++|+++..++.||+.+.. -++|+++..|..++. +.++||+|
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~r--Cd~LlavDis~~Al~~Ar~Rl~~------~~~V~~~~~dvp~~~---P~~~FDLI 110 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPR--CDRLLAVDISPRALARARERLAG------LPHVEWIQADVPEFW---PEGRFDLI 110 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGG--EEEEEEEES-HHHHHHHHHHTTT-------SSEEEEES-TTT------SS-EEEE
T ss_pred cccceeEecCCCccHHHHHHHHh--hCceEEEeCCHHHHHHHHHhcCC------CCCeEEEECcCCCCC---CCCCeeEE
Confidence 34579999999999999999998 47999999999999999999874 368999999987764 47899999
Q ss_pred EEcCCCCCC-CccccCcHHHHHHHHhccCCCcEEEEec-----cchhhhhhHHHHHHHHHHhhc
Q 019187 205 IVDSSDPIG-PAQELFEKPFFESVAKALRPGGVVSTQA-----ESIWLHMHIIEDIVANCRQIF 262 (345)
Q Consensus 205 i~D~~~p~~-~~~~l~t~ef~~~v~r~LkpgGvlv~~~-----~s~~~~~~~~~~i~~~l~~~F 262 (345)
++--.--.- +...+ ..+.+.+.+.|+|||.+|+-. ..-|.+..--+.+++.+.+.|
T Consensus 111 V~SEVlYYL~~~~~L--~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~ 172 (201)
T PF05401_consen 111 VLSEVLYYLDDAEDL--RAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHL 172 (201)
T ss_dssp EEES-GGGSSSHHHH--HHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHS
T ss_pred EEehHhHcCCCHHHH--HHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHh
Confidence 964221111 11111 357899999999999999843 223555556677888888887
No 91
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=99.14 E-value=6e-11 Score=117.44 Aligned_cols=148 Identities=24% Similarity=0.372 Sum_probs=116.8
Q ss_pred hHHHHHH-Hhccccc------CCCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCE
Q 019187 110 CAYQEMI-THLPLCS------IPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRV 182 (345)
Q Consensus 110 ~~Y~e~l-~~l~l~~------~~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv 182 (345)
+.||.+| ..+++.. +....++|++|.|+|++...+..+.+..++++||+||++++.|++||... .+.|.
T Consensus 272 s~~h~~m~~g~aL~~n~~~~~~~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~----q~~r~ 347 (482)
T KOG2352|consen 272 SQYHQMMIGGLALIMNRPPQKLDTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFM----QSDRN 347 (482)
T ss_pred cchhhhhhccceeccccCchhccccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchh----hhhhh
Confidence 5688876 4444432 22356899999999999999877766789999999999999999999765 44589
Q ss_pred EEEEechHhHHhhC-----CCCCccEEEEcCCCCC-----CCccccCcHHHHHHHHhccCCCcEEEEeccchhhhhhHHH
Q 019187 183 TLHIGDGVAFLKAV-----PEGTYDAVIVDSSDPI-----GPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIE 252 (345)
Q Consensus 183 ~v~~~D~~~~l~~~-----~~~~yDvIi~D~~~p~-----~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s~~~~~~~~~ 252 (345)
++++.||.+|+++. .+..||++++|...+. +++.......+++.++..|.|.|++++|.- ..+...-.
T Consensus 348 ~V~i~dGl~~~~~~~k~~~~~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv--~r~~~~~~ 425 (482)
T KOG2352|consen 348 KVHIADGLDFLQRTAKSQQEDICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLV--TRNSSFKD 425 (482)
T ss_pred hhhHhhchHHHHHHhhccccccCCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEe--cCCcchhH
Confidence 99999999999864 2457999999654432 345666788999999999999999999863 33455667
Q ss_pred HHHHHHHhhcC
Q 019187 253 DIVANCRQIFK 263 (345)
Q Consensus 253 ~i~~~l~~~F~ 263 (345)
.+..+++++|+
T Consensus 426 ~~~~~l~~vf~ 436 (482)
T KOG2352|consen 426 EVLMNLAKVFP 436 (482)
T ss_pred HHHHhhhhhhH
Confidence 88899999994
No 92
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.13 E-value=5.7e-10 Score=101.30 Aligned_cols=120 Identities=17% Similarity=0.247 Sum_probs=85.0
Q ss_pred CCCceEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHH------hhCC
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHS-SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFL------KAVP 197 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~-~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l------~~~~ 197 (345)
.+..+|||||||+|..+..+++.. +...|++||+++. . ..++++++++|+.+.- ....
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~------~---------~~~~v~~i~~D~~~~~~~~~i~~~~~ 114 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM------D---------PIVGVDFLQGDFRDELVLKALLERVG 114 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc------c---------CCCCcEEEecCCCChHHHHHHHHHhC
Confidence 345799999999999999998873 3458999999981 0 1245899999987631 1233
Q ss_pred CCCccEEEEcCCCCCCCcc--cc-----CcHHHHHHHHhccCCCcEEEEeccchhhhhhHHHHHHHHHHhhcC
Q 019187 198 EGTYDAVIVDSSDPIGPAQ--EL-----FEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFK 263 (345)
Q Consensus 198 ~~~yDvIi~D~~~p~~~~~--~l-----~t~ef~~~v~r~LkpgGvlv~~~~s~~~~~~~~~~i~~~l~~~F~ 263 (345)
.++||+|++|......... .. .....++.+.++|+|||.|++- .+..+.+.+++..++..|.
T Consensus 115 ~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~----~~~~~~~~~~l~~l~~~f~ 183 (209)
T PRK11188 115 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK----VFQGEGFDEYLREIRSLFT 183 (209)
T ss_pred CCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE----EecCcCHHHHHHHHHhCce
Confidence 6789999998743332111 00 0246889999999999999983 2334556677888888883
No 93
>PRK14968 putative methyltransferase; Provisional
Probab=99.13 E-value=6.1e-10 Score=98.04 Aligned_cols=112 Identities=18% Similarity=0.242 Sum_probs=82.3
Q ss_pred CCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
.+.++|||+|||+|.++..+++. ..+|+++|+++.+++.+++++... +..+.++.++.+|..+.+. .++||+|
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~--~~~~~~~~~~~~d~~~~~~---~~~~d~v 94 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLN--NIRNNGVEVIRSDLFEPFR---GDKFDVI 94 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHc--CCCCcceEEEecccccccc---ccCceEE
Confidence 35678999999999999999988 468999999999999999887653 2233238899999766442 4589999
Q ss_pred EEcCCCCCCCcc-----------------ccCcHHHHHHHHhccCCCcEEEEeccc
Q 019187 205 IVDSSDPIGPAQ-----------------ELFEKPFFESVAKALRPGGVVSTQAES 243 (345)
Q Consensus 205 i~D~~~p~~~~~-----------------~l~t~ef~~~v~r~LkpgGvlv~~~~s 243 (345)
+++.+....... ......+++.+.+.|+|||.+++...+
T Consensus 95 i~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~ 150 (188)
T PRK14968 95 LFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS 150 (188)
T ss_pred EECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 987543110000 011246899999999999998876544
No 94
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.13 E-value=3.5e-10 Score=106.28 Aligned_cols=106 Identities=18% Similarity=0.278 Sum_probs=80.7
Q ss_pred CCCceEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccE
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHS-SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~-~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDv 203 (345)
....+|||||||+|..+..+++.. ...+|+++|+++.+++.|+++.... .-++++++.+|..+.- .+++.||+
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~----g~~~v~~~~~d~~~l~--~~~~~fD~ 149 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKA----GYTNVEFRLGEIEALP--VADNSVDV 149 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHc----CCCCEEEEEcchhhCC--CCCCceeE
Confidence 356799999999999888777653 3358999999999999999986543 2247899999975532 23568999
Q ss_pred EEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEe
Q 019187 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (345)
Q Consensus 204 Ii~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~ 240 (345)
|+++..-...+. ....++.+.++|+|||.+++.
T Consensus 150 Vi~~~v~~~~~d----~~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 150 IISNCVINLSPD----KERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred EEEcCcccCCCC----HHHHHHHHHHHcCCCcEEEEE
Confidence 998764332221 247899999999999999884
No 95
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.12 E-value=2.5e-10 Score=108.38 Aligned_cols=102 Identities=13% Similarity=0.147 Sum_probs=77.9
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
.+++|||||||+|..+..+++. ..+|+++|+++.+++.+++..... ..++++...|..... . +++||+|+
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~-----~l~v~~~~~D~~~~~--~-~~~fD~I~ 189 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKE-----NLNIRTGLYDINSAS--I-QEEYDFIL 189 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHc-----CCceEEEEechhccc--c-cCCccEEE
Confidence 4679999999999999999887 358999999999999999876542 236888888875532 2 57899999
Q ss_pred EcCCCCCCCccccCcHHHHHHHHhccCCCcEEEE
Q 019187 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVST 239 (345)
Q Consensus 206 ~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~ 239 (345)
+...-....... ...+++.+.++|+|||++++
T Consensus 190 ~~~vl~~l~~~~--~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 190 STVVLMFLNRER--IPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred EcchhhhCCHHH--HHHHHHHHHHhcCCCcEEEE
Confidence 765432212111 25789999999999998654
No 96
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=1.7e-09 Score=102.48 Aligned_cols=153 Identities=16% Similarity=0.259 Sum_probs=104.1
Q ss_pred eCCCceEEEEEEcCcceEEEEcCeEeeeccchhHHHHHHHhcccccCCCCceEEEEeccchHHHHHHHhcCCCcEEEEEE
Q 019187 78 KSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICE 157 (345)
Q Consensus 78 ~s~yq~i~v~e~~~~g~~L~lDg~~q~~~~de~~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VE 157 (345)
.-|-|+|.-.. ..+|..+.++-.+-...+|.....+.+.. ... ....+|||||||+|.++..+++..+..+|+++|
T Consensus 66 ~~P~~yi~g~~-~f~gl~~~v~~~vliPr~dTe~Lve~~l~--~~~-~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~D 141 (280)
T COG2890 66 GEPVAYILGSA-EFGGLRFKVDEGVLIPRPDTELLVEAALA--LLL-QLDKRILDLGTGSGAIAIALAKEGPDAEVIAVD 141 (280)
T ss_pred CCCHhHhhccC-eecceeeeeCCCceecCCchHHHHHHHHH--hhh-hcCCcEEEecCChHHHHHHHHhhCcCCeEEEEE
Confidence 34455553332 24577788888888887775554444321 111 112289999999999999999987777999999
Q ss_pred CCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEEEcCCC-CCC-----C-------cccc------
Q 019187 158 IDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSD-PIG-----P-------AQEL------ 218 (345)
Q Consensus 158 id~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi~D~~~-p~~-----~-------~~~l------ 218 (345)
|++..+++|+++.... ++ .++.++.+|. +... .++||+|+++++- |.. + ...|
T Consensus 142 is~~Al~~A~~Na~~~--~l--~~~~~~~~dl---f~~~-~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dG 213 (280)
T COG2890 142 ISPDALALARENAERN--GL--VRVLVVQSDL---FEPL-RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDG 213 (280)
T ss_pred CCHHHHHHHHHHHHHc--CC--ccEEEEeeec---cccc-CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccH
Confidence 9999999999998764 22 4566666664 4333 4599999987752 111 0 0011
Q ss_pred --CcHHHHHHHHhccCCCcEEEEecc
Q 019187 219 --FEKPFFESVAKALRPGGVVSTQAE 242 (345)
Q Consensus 219 --~t~ef~~~v~r~LkpgGvlv~~~~ 242 (345)
....|+..+.+.|+|||++++..+
T Consensus 214 l~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 214 LEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred HHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 124678888899999999998753
No 97
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.10 E-value=1.5e-10 Score=106.35 Aligned_cols=102 Identities=19% Similarity=0.322 Sum_probs=75.3
Q ss_pred CceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCC---CEEEEEechHhHHhhCCCCCccE
Q 019187 127 PKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDP---RVTLHIGDGVAFLKAVPEGTYDA 203 (345)
Q Consensus 127 ~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~---rv~v~~~D~~~~l~~~~~~~yDv 203 (345)
.++|||+|||+|.+...|++. ..+|+++|+.+++++.|+++ .......+.+ |+++.+.|+... .++||+
T Consensus 90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h-~~~dP~~~~~~~y~l~~~~~~~E~~-----~~~fDa 161 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEH-KKMDPVLEGAIAYRLEYEDTDVEGL-----TGKFDA 161 (282)
T ss_pred CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHh-hhcCchhccccceeeehhhcchhhc-----ccccce
Confidence 467999999999999999999 47999999999999999998 3321111111 466666774443 466999
Q ss_pred EEEc-CCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 204 VIVD-SSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 204 Ii~D-~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
|+|- .-.+... -.+|.+.+.+.|+|||.+++.+
T Consensus 162 VvcsevleHV~d-----p~~~l~~l~~~lkP~G~lfitt 195 (282)
T KOG1270|consen 162 VVCSEVLEHVKD-----PQEFLNCLSALLKPNGRLFITT 195 (282)
T ss_pred eeeHHHHHHHhC-----HHHHHHHHHHHhCCCCceEeee
Confidence 9962 1111111 2689999999999999998865
No 98
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.09 E-value=5.7e-10 Score=101.06 Aligned_cols=99 Identities=19% Similarity=0.263 Sum_probs=77.0
Q ss_pred CCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
....+|||||||+|..+..+++.. .+|+++|+++.+++.|++++... .-.+++++.+|+.+.+. ..++||+|
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~----~~~~v~~~~~d~~~~~~--~~~~fD~I 148 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQL----GLHNVSVRHGDGWKGWP--AYAPFDRI 148 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHC----CCCceEEEECCcccCCC--cCCCcCEE
Confidence 355799999999999998777763 48999999999999999988754 22359999999765433 24789999
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
+++...+ .+.+.+.+.|+|||++++..
T Consensus 149 ~~~~~~~----------~~~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 149 LVTAAAP----------EIPRALLEQLKEGGILVAPV 175 (212)
T ss_pred EEccCch----------hhhHHHHHhcCCCcEEEEEE
Confidence 9886432 23456788999999999854
No 99
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.08 E-value=2.6e-09 Score=96.67 Aligned_cols=99 Identities=15% Similarity=0.207 Sum_probs=72.9
Q ss_pred CCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
+.+.+|||||||+|..+..+++..+..++++||+++.+++.|+++++ +++++.+|+.+. .++++||+|
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~---------~~~~~~~d~~~~---~~~~sfD~V 109 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP---------NINIIQGSLFDP---FKDNFFDLV 109 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC---------CCcEEEeeccCC---CCCCCEEEE
Confidence 46679999999999999999887445689999999999999998653 467788887662 236789999
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEE
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVST 239 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~ 239 (345)
++...-....+.. -..+++.+.++++ +.+++
T Consensus 110 ~~~~vL~hl~p~~--~~~~l~el~r~~~--~~v~i 140 (204)
T TIGR03587 110 LTKGVLIHINPDN--LPTAYRELYRCSN--RYILI 140 (204)
T ss_pred EECChhhhCCHHH--HHHHHHHHHhhcC--cEEEE
Confidence 9765432112111 2578888888873 44443
No 100
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.08 E-value=1.5e-09 Score=96.59 Aligned_cols=119 Identities=19% Similarity=0.307 Sum_probs=80.9
Q ss_pred CCCceEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhH-----H-hhCC
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHS-SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAF-----L-KAVP 197 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~-~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~-----l-~~~~ 197 (345)
+...+|||||||+|+++..+++.. +..+|+++|+++.+ . .++++++.+|..+. + +..+
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~-------~~~i~~~~~d~~~~~~~~~l~~~~~ 95 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------P-------IENVDFIRGDFTDEEVLNKIRERVG 95 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------c-------CCCceEEEeeCCChhHHHHHHHHhC
Confidence 456799999999999999887753 45689999999864 1 13577888886542 1 1223
Q ss_pred CCCccEEEEcCCCCC-CC--cccc----CcHHHHHHHHhccCCCcEEEEeccchhhhhhHHHHHHHHHHhhc
Q 019187 198 EGTYDAVIVDSSDPI-GP--AQEL----FEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIF 262 (345)
Q Consensus 198 ~~~yDvIi~D~~~p~-~~--~~~l----~t~ef~~~v~r~LkpgGvlv~~~~s~~~~~~~~~~i~~~l~~~F 262 (345)
.++||+|++|...+. +. ...+ ....+++.+.++|+|||++++.. .....+..++..++..|
T Consensus 96 ~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~----~~~~~~~~~l~~l~~~~ 163 (188)
T TIGR00438 96 DDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV----FQGEEIDEYLNELRKLF 163 (188)
T ss_pred CCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE----ccCccHHHHHHHHHhhh
Confidence 568999999865321 11 0000 01478999999999999999853 23344456667777667
No 101
>PRK06922 hypothetical protein; Provisional
Probab=99.08 E-value=5.4e-10 Score=115.18 Aligned_cols=112 Identities=18% Similarity=0.242 Sum_probs=83.6
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
.+.+|||||||+|..+..+++..+..+|+++|+++.+++.|++.... ...+++++.+|+.+.....++++||+|+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~-----~g~~ie~I~gDa~dLp~~fedeSFDvVV 492 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQN-----EGRSWNVIKGDAINLSSSFEKESVDTIV 492 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhh-----cCCCeEEEEcchHhCccccCCCCEEEEE
Confidence 46799999999999999888765677999999999999999987543 2347889999987743223467899999
Q ss_pred EcCCCCCC----C-c----cccCcHHHHHHHHhccCCCcEEEEecc
Q 019187 206 VDSSDPIG----P-A----QELFEKPFFESVAKALRPGGVVSTQAE 242 (345)
Q Consensus 206 ~D~~~p~~----~-~----~~l~t~ef~~~v~r~LkpgGvlv~~~~ 242 (345)
+...-+.. + . ..-....+++.++++|||||.+++...
T Consensus 493 sn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 493 YSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred EchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 76432210 0 0 001135789999999999999998653
No 102
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.07 E-value=7.7e-10 Score=112.03 Aligned_cols=105 Identities=18% Similarity=0.193 Sum_probs=80.7
Q ss_pred CCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
..+.+|||||||+|..+..++++. ..+|+++|+++.+++.|+++... ...+++++.+|+.... .++++||+|
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~-----~~~~v~~~~~d~~~~~--~~~~~fD~I 336 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIG-----RKCSVEFEVADCTKKT--YPDNSFDVI 336 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhc-----CCCceEEEEcCcccCC--CCCCCEEEE
Confidence 346799999999999999998875 45899999999999999987542 2347999999976532 235789999
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
++...-...+. ...+++.++++|+|||.+++..
T Consensus 337 ~s~~~l~h~~d----~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 337 YSRDTILHIQD----KPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred EECCcccccCC----HHHHHHHHHHHcCCCeEEEEEE
Confidence 97533211111 2578999999999999998753
No 103
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.06 E-value=9.4e-10 Score=106.60 Aligned_cols=102 Identities=20% Similarity=0.227 Sum_probs=78.6
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
...+|||||||+|.++..+++..+..+|+++|+++.+++.|++... ..+++++.+|+.+.- .+++.||+|+
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~-------~~~i~~i~gD~e~lp--~~~~sFDvVI 183 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECKIIEGDAEDLP--FPTDYADRYV 183 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh-------ccCCeEEeccHHhCC--CCCCceeEEE
Confidence 3569999999999999988876545789999999999999998753 246889999976642 2357899999
Q ss_pred EcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEe
Q 019187 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (345)
Q Consensus 206 ~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~ 240 (345)
+...-...+. ....+++++++|+|||.+++.
T Consensus 184 s~~~L~~~~d----~~~~L~e~~rvLkPGG~LvIi 214 (340)
T PLN02490 184 SAGSIEYWPD----PQRGIKEAYRVLKIGGKACLI 214 (340)
T ss_pred EcChhhhCCC----HHHHHHHHHHhcCCCcEEEEE
Confidence 7543222221 246899999999999998764
No 104
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.06 E-value=1.6e-09 Score=99.34 Aligned_cols=107 Identities=22% Similarity=0.285 Sum_probs=82.1
Q ss_pred CCceEEEEeccchHHHHHHHhcCCC------cEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCC
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSV------EKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEG 199 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~------~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~ 199 (345)
+..+|||++||+|-++.-++++-.. .+|+++||+|.++.++++...+. .-..++++.++.+||.+.- .++.
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~-~l~~~~~~~w~~~dAE~Lp--Fdd~ 176 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKR-PLKASSRVEWVEGDAEDLP--FDDD 176 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhc-CCCcCCceEEEeCCcccCC--CCCC
Confidence 4569999999999999999998544 79999999999999999876331 1124667999999988753 4578
Q ss_pred CccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEE
Q 019187 200 TYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVST 239 (345)
Q Consensus 200 ~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~ 239 (345)
.||...+...--..+. -...+++++|+|||||+|..
T Consensus 177 s~D~yTiafGIRN~th----~~k~l~EAYRVLKpGGrf~c 212 (296)
T KOG1540|consen 177 SFDAYTIAFGIRNVTH----IQKALREAYRVLKPGGRFSC 212 (296)
T ss_pred cceeEEEecceecCCC----HHHHHHHHHHhcCCCcEEEE
Confidence 9999876332111111 25789999999999999874
No 105
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.05 E-value=1.8e-09 Score=103.64 Aligned_cols=115 Identities=12% Similarity=0.128 Sum_probs=80.5
Q ss_pred hHHHHHHHhcccccCCCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHH---HhcccccccCCCCCCEEEEE
Q 019187 110 CAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVS---KQFFPDVAVGFEDPRVTLHI 186 (345)
Q Consensus 110 ~~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~a---r~~~~~~~~~~~~~rv~v~~ 186 (345)
..|...+.++.. .+.++|||||||+|..+..++... ...|+++|+++.++..+ ++++. ...++.+..
T Consensus 108 ~~~~~~l~~l~~---~~g~~VLDvGCG~G~~~~~~~~~g-~~~v~GiDpS~~ml~q~~~~~~~~~------~~~~v~~~~ 177 (314)
T TIGR00452 108 IKWDRVLPHLSP---LKGRTILDVGCGSGYHMWRMLGHG-AKSLVGIDPTVLFLCQFEAVRKLLD------NDKRAILEP 177 (314)
T ss_pred HHHHHHHHhcCC---CCCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHHhc------cCCCeEEEE
Confidence 445555555432 246899999999999998888774 45899999999987654 33322 235788888
Q ss_pred echHhHHhhCCCCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 187 GDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 187 ~D~~~~l~~~~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
.|..+.-. ...||+|++...-..... -..+++.++++|+|||.|++..
T Consensus 178 ~~ie~lp~---~~~FD~V~s~gvL~H~~d----p~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 178 LGIEQLHE---LYAFDTVFSMGVLYHRKS----PLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred CCHHHCCC---CCCcCEEEEcchhhccCC----HHHHHHHHHHhcCCCCEEEEEE
Confidence 88655421 357999997543221111 1478999999999999999764
No 106
>PRK08317 hypothetical protein; Provisional
Probab=99.05 E-value=1.2e-09 Score=99.31 Aligned_cols=106 Identities=25% Similarity=0.351 Sum_probs=81.0
Q ss_pred CCCceEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccE
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHS-SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~-~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDv 203 (345)
..+.+|||||||+|..+..++++. +..+++++|+++.+++.+++.... ..++++++.+|..... .+.++||+
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-----~~~~~~~~~~d~~~~~--~~~~~~D~ 90 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-----LGPNVEFVRGDADGLP--FPDGSFDA 90 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC-----CCCceEEEecccccCC--CCCCCceE
Confidence 356799999999999999998874 457999999999999999987322 2457899999976542 23578999
Q ss_pred EEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 204 Ii~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
|++...-..... ...+++.+.++|+|||.+++..
T Consensus 91 v~~~~~~~~~~~----~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 91 VRSDRVLQHLED----PARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred EEEechhhccCC----HHHHHHHHHHHhcCCcEEEEEe
Confidence 997543221111 2578999999999999988754
No 107
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.04 E-value=1.2e-09 Score=107.86 Aligned_cols=101 Identities=22% Similarity=0.370 Sum_probs=77.7
Q ss_pred CCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
....+|||||||+|.++..++++.+ .+|+++|+++++++.|++.... ..+++..+|..+. +++||+|
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g-~~V~giDlS~~~l~~A~~~~~~-------l~v~~~~~D~~~l-----~~~fD~I 232 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYG-VSVVGVTISAEQQKLAQERCAG-------LPVEIRLQDYRDL-----NGQFDRI 232 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHhcc-------CeEEEEECchhhc-----CCCCCEE
Confidence 3457999999999999999998754 5899999999999999987642 2478888886543 4689999
Q ss_pred EEcCC-CCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 205 IVDSS-DPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 205 i~D~~-~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
++-.. ...+.. .-..+++.+.++|+|||+++++.
T Consensus 233 vs~~~~ehvg~~---~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 233 VSVGMFEHVGPK---NYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred EEeCchhhCChH---HHHHHHHHHHHHcCCCcEEEEEE
Confidence 86322 221111 12478999999999999999875
No 108
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.04 E-value=1.7e-09 Score=94.58 Aligned_cols=100 Identities=22% Similarity=0.276 Sum_probs=77.1
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
...+|||||||+|.++.+++++ ..+|++||+|+.+++.+++++.. .++++++.+|+.++.. ++.+||.|+
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~------~~~v~ii~~D~~~~~~--~~~~~d~vi 82 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA------ADNLTVIHGDALKFDL--PKLQPYKVV 82 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc------CCCEEEEECchhcCCc--cccCCCEEE
Confidence 4568999999999999999988 46899999999999999998753 3589999999988743 244699999
Q ss_pred EcCCCCCCCccccCcHHHHHHHHhc--cCCCcEEEEecc
Q 019187 206 VDSSDPIGPAQELFEKPFFESVAKA--LRPGGVVSTQAE 242 (345)
Q Consensus 206 ~D~~~p~~~~~~l~t~ef~~~v~r~--LkpgGvlv~~~~ 242 (345)
.+++-.. +.+.+..+.+. +.++|++++|-+
T Consensus 83 ~n~Py~~-------~~~~i~~~l~~~~~~~~~~l~~q~e 114 (169)
T smart00650 83 GNLPYNI-------STPILFKLLEEPPAFRDAVLMVQKE 114 (169)
T ss_pred ECCCccc-------HHHHHHHHHhcCCCcceEEEEEEHH
Confidence 8865432 23445555433 458899999853
No 109
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.04 E-value=4.6e-09 Score=105.75 Aligned_cols=114 Identities=21% Similarity=0.267 Sum_probs=86.9
Q ss_pred CCceEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHS-SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~-~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
...+|||+|||+|+.+..++++. +..+|+++|+++.+++.+++++... ++ .+++++.+|+..+.. .++||+|
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~--g~--~~v~~~~~Da~~~~~---~~~fD~V 322 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASAL--GI--TIIETIEGDARSFSP---EEQPDAI 322 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHh--CC--CeEEEEeCccccccc---CCCCCEE
Confidence 45799999999999998887752 3458999999999999999988754 22 369999999887642 5689999
Q ss_pred EEcCCCCC-CC----cc---cc----------CcHHHHHHHHhccCCCcEEEEeccchhh
Q 019187 205 IVDSSDPI-GP----AQ---EL----------FEKPFFESVAKALRPGGVVSTQAESIWL 246 (345)
Q Consensus 205 i~D~~~p~-~~----~~---~l----------~t~ef~~~v~r~LkpgGvlv~~~~s~~~ 246 (345)
++|++... +. +. .+ ....++..+.+.|+|||+++..+.+...
T Consensus 323 l~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~ 382 (445)
T PRK14904 323 LLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEP 382 (445)
T ss_pred EEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 99976421 11 00 00 1235899999999999999998876553
No 110
>PHA03411 putative methyltransferase; Provisional
Probab=99.04 E-value=1.6e-09 Score=101.57 Aligned_cols=110 Identities=18% Similarity=0.205 Sum_probs=82.2
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
...+|||+|||+|.++..++++.+..+|++||+++.+++.|++.+ ++++++.+|+.++.. .++||+|+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~---------~~v~~v~~D~~e~~~---~~kFDlII 131 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL---------PEAEWITSDVFEFES---NEKFDVVI 131 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---------cCCEEEECchhhhcc---cCCCcEEE
Confidence 356999999999999998887654569999999999999999864 368899999988753 46899999
Q ss_pred EcCCCCCCCc---cc--cC-----------cHHHHHHHHhccCCCcEEEE-eccchhhh
Q 019187 206 VDSSDPIGPA---QE--LF-----------EKPFFESVAKALRPGGVVST-QAESIWLH 247 (345)
Q Consensus 206 ~D~~~p~~~~---~~--l~-----------t~ef~~~v~r~LkpgGvlv~-~~~s~~~~ 247 (345)
++++-..... .. -+ -..++..+...|+|+|.+.+ .++.++++
T Consensus 132 sNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~ 190 (279)
T PHA03411 132 SNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYD 190 (279)
T ss_pred EcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecccccc
Confidence 9876432111 11 11 14788888999999996543 34445554
No 111
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.03 E-value=2.7e-09 Score=102.81 Aligned_cols=100 Identities=23% Similarity=0.259 Sum_probs=77.7
Q ss_pred CCceEEEEeccchHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSS-VEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~-~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
+..+|||||||+|..+..+++..+ ...|++||+++.+++.|++++... .-.++.++.+|+.+.+.. .+.||+|
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~----g~~nV~~i~gD~~~~~~~--~~~fD~I 153 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRL----GIENVIFVCGDGYYGVPE--FAPYDVI 153 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHc----CCCcEEEEeCChhhcccc--cCCccEE
Confidence 457999999999999999988643 247999999999999999987654 234799999998776543 3679999
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
+++...+ +....+.+.|+|||.+++..
T Consensus 154 i~~~g~~----------~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 154 FVTVGVD----------EVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred EECCchH----------HhHHHHHHhcCCCCEEEEEe
Confidence 9874322 23345678999999988754
No 112
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.03 E-value=1.6e-09 Score=100.62 Aligned_cols=120 Identities=25% Similarity=0.424 Sum_probs=89.7
Q ss_pred CCCCceEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHh--HHhhCCCCC
Q 019187 124 IPNPKKVLVIGGGDGGVLREVSRH-SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVA--FLKAVPEGT 200 (345)
Q Consensus 124 ~~~~~~VL~IG~G~G~~~~~ll~~-~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~--~l~~~~~~~ 200 (345)
.....+||+.|.|+|.++..+++. .+..+|...|+.++..+.|+++|... ++ ..++++.+.|..+ |..+. +..
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~--gl-~~~v~~~~~Dv~~~g~~~~~-~~~ 113 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERH--GL-DDNVTVHHRDVCEEGFDEEL-ESD 113 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHT--TC-CTTEEEEES-GGCG--STT--TTS
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHc--CC-CCCceeEecceecccccccc-cCc
Confidence 345689999999999999999985 44679999999999999999999875 33 3489999999853 31222 478
Q ss_pred ccEEEEcCCCCCCCccccCcHHHHHHHHhcc-CCCcEEEEeccchhhhhhHHHHHHHHHHh
Q 019187 201 YDAVIVDSSDPIGPAQELFEKPFFESVAKAL-RPGGVVSTQAESIWLHMHIIEDIVANCRQ 260 (345)
Q Consensus 201 yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~L-kpgGvlv~~~~s~~~~~~~~~~i~~~l~~ 260 (345)
+|.|++|+++|| +.+..+.++| ++||+++.-+.+ .+.....++.|++
T Consensus 114 ~DavfLDlp~Pw---------~~i~~~~~~L~~~gG~i~~fsP~----ieQv~~~~~~L~~ 161 (247)
T PF08704_consen 114 FDAVFLDLPDPW---------EAIPHAKRALKKPGGRICCFSPC----IEQVQKTVEALRE 161 (247)
T ss_dssp EEEEEEESSSGG---------GGHHHHHHHE-EEEEEEEEEESS----HHHHHHHHHHHHH
T ss_pred ccEEEEeCCCHH---------HHHHHHHHHHhcCCceEEEECCC----HHHHHHHHHHHHH
Confidence 999999999986 4578899999 899999987533 2445566666665
No 113
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.03 E-value=2.9e-09 Score=82.32 Aligned_cols=103 Identities=18% Similarity=0.308 Sum_probs=79.3
Q ss_pred eEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEEEcC
Q 019187 129 KVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDS 208 (345)
Q Consensus 129 ~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi~D~ 208 (345)
+||++|||.|..+..+++. ...+++++|+++..++.+++.... ....+++++.+|..++... ..++||+|+++.
T Consensus 1 ~ildig~G~G~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~d~i~~~~ 74 (107)
T cd02440 1 RVLDLGCGTGALALALASG-PGARVTGVDISPVALELARKAAAA----LLADNVEVLKGDAEELPPE-ADESFDVIISDP 74 (107)
T ss_pred CeEEEcCCccHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHhc----ccccceEEEEcChhhhccc-cCCceEEEEEcc
Confidence 5899999999999999883 467999999999999999852221 1346799999998887642 257899999876
Q ss_pred CCCCCCccccCcHHHHHHHHhccCCCcEEEEe
Q 019187 209 SDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (345)
Q Consensus 209 ~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~ 240 (345)
..... .-....+++.+.+.|++||.+++.
T Consensus 75 ~~~~~---~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 75 PLHHL---VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ceeeh---hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 54321 112367899999999999999874
No 114
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.02 E-value=1.9e-09 Score=108.39 Aligned_cols=116 Identities=18% Similarity=0.287 Sum_probs=87.2
Q ss_pred CCCceEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccE
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHS-SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~-~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDv 203 (345)
.+..+|||+|||+|+.+..++++. +..+|+++|+++..++.+++++... +. .+++++.+|+.++.... .++||+
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~--g~--~~v~~~~~D~~~~~~~~-~~~fD~ 323 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRL--GL--TNIETKALDARKVHEKF-AEKFDK 323 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc--CC--CeEEEEeCCcccccchh-cccCCE
Confidence 345799999999999999998863 4569999999999999999988654 22 34999999988765433 368999
Q ss_pred EEEcCCCCC-C-----Cc-------ccc-----CcHHHHHHHHhccCCCcEEEEeccchh
Q 019187 204 VIVDSSDPI-G-----PA-------QEL-----FEKPFFESVAKALRPGGVVSTQAESIW 245 (345)
Q Consensus 204 Ii~D~~~p~-~-----~~-------~~l-----~t~ef~~~v~r~LkpgGvlv~~~~s~~ 245 (345)
|++|++... + +. ..+ ...++++.+.+.|+|||.++..+.+.+
T Consensus 324 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 383 (444)
T PRK14902 324 ILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIE 383 (444)
T ss_pred EEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCC
Confidence 999976321 1 00 000 124689999999999999997665544
No 115
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.02 E-value=2.9e-09 Score=102.87 Aligned_cols=117 Identities=15% Similarity=0.148 Sum_probs=81.2
Q ss_pred hHHHHHHHhcccccCCCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEech
Q 019187 110 CAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDG 189 (345)
Q Consensus 110 ~~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~ 189 (345)
..|...+.+++.. ..++|||||||+|..+..+++.. ...|+++|+++.++..++..-... + .+.+++++.+|+
T Consensus 109 ~k~~~l~~~l~~l---~g~~VLDIGCG~G~~~~~la~~g-~~~V~GiD~S~~~l~q~~a~~~~~--~-~~~~i~~~~~d~ 181 (322)
T PRK15068 109 WKWDRVLPHLSPL---KGRTVLDVGCGNGYHMWRMLGAG-AKLVVGIDPSQLFLCQFEAVRKLL--G-NDQRAHLLPLGI 181 (322)
T ss_pred hHHHHHHHhhCCC---CCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHhc--C-CCCCeEEEeCCH
Confidence 4455555565422 45899999999999999999874 457999999998876543211100 0 245799999997
Q ss_pred HhHHhhCCCCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEe
Q 019187 190 VAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (345)
Q Consensus 190 ~~~l~~~~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~ 240 (345)
.+.- . .++||+|++-..-.... . ...+++.+++.|+|||.+++.
T Consensus 182 e~lp--~-~~~FD~V~s~~vl~H~~--d--p~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 182 EQLP--A-LKAFDTVFSMGVLYHRR--S--PLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred HHCC--C-cCCcCEEEECChhhccC--C--HHHHHHHHHHhcCCCcEEEEE
Confidence 6542 1 57899999743221111 1 257899999999999999875
No 116
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.02 E-value=3.4e-09 Score=106.11 Aligned_cols=117 Identities=17% Similarity=0.269 Sum_probs=87.0
Q ss_pred CCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
....+|||+|||+|+.+.++++..+..+|+++|+++.+++.+++++... + .+++++.+|+.+.......++||.|
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~--g---~~~~~~~~D~~~~~~~~~~~~fD~V 317 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRL--G---LKATVIVGDARDPAQWWDGQPFDRI 317 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHc--C---CCeEEEEcCcccchhhcccCCCCEE
Confidence 3467999999999999999988754468999999999999999988754 1 2478999998764322224679999
Q ss_pred EEcCCCCC-CC----cccc-------------CcHHHHHHHHhccCCCcEEEEeccchhh
Q 019187 205 IVDSSDPI-GP----AQEL-------------FEKPFFESVAKALRPGGVVSTQAESIWL 246 (345)
Q Consensus 205 i~D~~~p~-~~----~~~l-------------~t~ef~~~v~r~LkpgGvlv~~~~s~~~ 246 (345)
++|++... +. +... ...++++.+.+.|+|||.++..+.+.+.
T Consensus 318 l~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~ 377 (427)
T PRK10901 318 LLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILP 377 (427)
T ss_pred EECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 99986431 11 0000 1236899999999999999987765443
No 117
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.02 E-value=2e-09 Score=101.37 Aligned_cols=94 Identities=21% Similarity=0.337 Sum_probs=72.8
Q ss_pred CCceEEEEeccchHHHHHHHhcCC---CcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCcc
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSS---VEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYD 202 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~---~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yD 202 (345)
...+|||||||+|..+..+++..+ ..+++++|+++.+++.|++.. +++++..+|+.+.. .++++||
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~---------~~~~~~~~d~~~lp--~~~~sfD 153 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY---------PQVTFCVASSHRLP--FADQSLD 153 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC---------CCCeEEEeecccCC--CcCCcee
Confidence 457899999999999999887532 237999999999999998754 35788889976542 2367899
Q ss_pred EEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 203 AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 203 vIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
+|+.... ..++++++|+|+|||.+++..
T Consensus 154 ~I~~~~~-----------~~~~~e~~rvLkpgG~li~~~ 181 (272)
T PRK11088 154 AIIRIYA-----------PCKAEELARVVKPGGIVITVT 181 (272)
T ss_pred EEEEecC-----------CCCHHHHHhhccCCCEEEEEe
Confidence 9996322 134678899999999999864
No 118
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.01 E-value=2.1e-09 Score=98.04 Aligned_cols=106 Identities=20% Similarity=0.312 Sum_probs=81.2
Q ss_pred CCceEEEEeccchHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSS-VEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~-~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
...+|||||||+|..+..+++..+ ..+++++|+++.+++.+++++... + ...+++++.+|..+... +.+.||+|
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~--~-~~~~~~~~~~d~~~~~~--~~~~~D~I 125 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDL--G-LSGNVEFVQGDAEALPF--PDNSFDAV 125 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccc--c-cccCeEEEecccccCCC--CCCCccEE
Confidence 457999999999999999988743 579999999999999999987542 1 13578999999776532 25789999
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEe
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~ 240 (345)
++...-.... . ...+++.+.++|+|||++++-
T Consensus 126 ~~~~~l~~~~--~--~~~~l~~~~~~L~~gG~li~~ 157 (239)
T PRK00216 126 TIAFGLRNVP--D--IDKALREMYRVLKPGGRLVIL 157 (239)
T ss_pred EEecccccCC--C--HHHHHHHHHHhccCCcEEEEE
Confidence 9754322111 1 357899999999999988763
No 119
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.01 E-value=4.6e-09 Score=98.65 Aligned_cols=113 Identities=25% Similarity=0.330 Sum_probs=85.3
Q ss_pred CCceEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHS-SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~-~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
...+|||+|||.|+.+..+++.. +...|+++|+++..++.+++++... +. .+++++..|+..+... .+.||+|
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~--g~--~~v~~~~~D~~~~~~~--~~~fD~V 144 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRC--GV--LNVAVTNFDGRVFGAA--VPKFDAI 144 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc--CC--CcEEEecCCHHHhhhh--ccCCCEE
Confidence 45789999999999999987753 2358999999999999999988764 22 4699999998876432 4569999
Q ss_pred EEcCCCCCC-C----cc--------cc-----CcHHHHHHHHhccCCCcEEEEeccch
Q 019187 205 IVDSSDPIG-P----AQ--------EL-----FEKPFFESVAKALRPGGVVSTQAESI 244 (345)
Q Consensus 205 i~D~~~p~~-~----~~--------~l-----~t~ef~~~v~r~LkpgGvlv~~~~s~ 244 (345)
++|++.... . +. .+ ...++++.+.+.|+|||+++..+.+.
T Consensus 145 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 145 LLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred EEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 999874321 0 00 00 13468889999999999998776553
No 120
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.01 E-value=4.4e-09 Score=94.04 Aligned_cols=107 Identities=12% Similarity=0.062 Sum_probs=81.9
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCC-C-CCccE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVP-E-GTYDA 203 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~-~-~~yDv 203 (345)
..++|||++||+|.++.+++.+. ..+|++||+|+..++.+++++... ++. .+++++.+|+.++++... . ..||+
T Consensus 49 ~g~~vLDLfaGsG~lglea~srg-a~~v~~vE~~~~a~~~~~~N~~~~--~~~-~~~~~~~~D~~~~l~~~~~~~~~~dv 124 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRG-AKVAFLEEDDRKANQTLKENLALL--KSG-EQAEVVRNSALRALKFLAKKPTFDNV 124 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHh--CCc-ccEEEEehhHHHHHHHhhccCCCceE
Confidence 45799999999999999999884 568999999999999999988765 222 379999999988876431 2 34899
Q ss_pred EEEcCCCCCCCccccCcHHHHHHHHh--ccCCCcEEEEec
Q 019187 204 VIVDSSDPIGPAQELFEKPFFESVAK--ALRPGGVVSTQA 241 (345)
Q Consensus 204 Ii~D~~~p~~~~~~l~t~ef~~~v~r--~LkpgGvlv~~~ 241 (345)
|++|++.... +..+.++.+.+ .|+++|++++..
T Consensus 125 v~~DPPy~~~-----~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 125 IYLDPPFFNG-----ALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred EEECcCCCCC-----cHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 9988765322 12345555544 699999999854
No 121
>PHA03412 putative methyltransferase; Provisional
Probab=99.01 E-value=2.2e-09 Score=98.48 Aligned_cols=101 Identities=17% Similarity=0.191 Sum_probs=74.1
Q ss_pred CCceEEEEeccchHHHHHHHhcC---CCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCcc
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHS---SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYD 202 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~---~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yD 202 (345)
...+|||+|||+|.++..+++.. +..+|++||||+.+++.|+++++ ++.++.+|...+. . .++||
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~---------~~~~~~~D~~~~~--~-~~~FD 116 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP---------EATWINADALTTE--F-DTLFD 116 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc---------CCEEEEcchhccc--c-cCCcc
Confidence 35799999999999999988741 24589999999999999998653 4789999977543 2 46899
Q ss_pred EEEEcCCCCCCCc--------cccCcHHHHHHHHhccCCCcEEEE
Q 019187 203 AVIVDSSDPIGPA--------QELFEKPFFESVAKALRPGGVVST 239 (345)
Q Consensus 203 vIi~D~~~p~~~~--------~~l~t~ef~~~v~r~LkpgGvlv~ 239 (345)
+||++++-..... ..+....+++.+.+++++|+. ++
T Consensus 117 lIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 117 MAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred EEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 9999876432111 113345688888886666554 54
No 122
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.01 E-value=1.1e-09 Score=97.55 Aligned_cols=109 Identities=18% Similarity=0.353 Sum_probs=81.2
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhC--CCCCccE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV--PEGTYDA 203 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~--~~~~yDv 203 (345)
...+||||-+|+|.++.|.+.+ +..+|+.||.|+..+...++++... +.. .+++++..|+..++... ...+||+
T Consensus 42 ~g~~vLDLFaGSGalGlEALSR-GA~~v~fVE~~~~a~~~i~~N~~~l--~~~-~~~~v~~~d~~~~l~~~~~~~~~fDi 117 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSR-GAKSVVFVEKNRKAIKIIKKNLEKL--GLE-DKIRVIKGDAFKFLLKLAKKGEKFDI 117 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHH--T-G-GGEEEEESSHHHHHHHHHHCTS-EEE
T ss_pred CCCeEEEcCCccCccHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHHh--CCC-cceeeeccCHHHHHHhhcccCCCceE
Confidence 5679999999999999999888 4789999999999999999998765 222 27999999999888654 4688999
Q ss_pred EEEcCCCCCCCccccCcHHHHHHHH--hccCCCcEEEEecc
Q 019187 204 VIVDSSDPIGPAQELFEKPFFESVA--KALRPGGVVSTQAE 242 (345)
Q Consensus 204 Ii~D~~~p~~~~~~l~t~ef~~~v~--r~LkpgGvlv~~~~ 242 (345)
|++|++-.... +..+.++.+. ..|+++|++++...
T Consensus 118 IflDPPY~~~~----~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 118 IFLDPPYAKGL----YYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp EEE--STTSCH----HHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred EEECCCcccch----HHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 99997653322 1245667766 78999999998753
No 123
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.00 E-value=2.8e-09 Score=103.20 Aligned_cols=109 Identities=19% Similarity=0.214 Sum_probs=82.2
Q ss_pred CCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
....+|||+|||+|+++.+++.. ..+++++|+|+.+++.|++++... +. +.++++.+|+.+.-. ..++||+|
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~--g~--~~i~~~~~D~~~l~~--~~~~~D~I 252 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHY--GI--EDFFVKRGDATKLPL--SSESVDAI 252 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHh--CC--CCCeEEecchhcCCc--ccCCCCEE
Confidence 34568999999999999997765 468999999999999999987654 22 238899999876422 25789999
Q ss_pred EEcCCCCCCCc--cc---cCcHHHHHHHHhccCCCcEEEEec
Q 019187 205 IVDSSDPIGPA--QE---LFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 205 i~D~~~p~~~~--~~---l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
++|++-..... .. -...++++.+++.|+|||.+++..
T Consensus 253 v~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 253 ATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAV 294 (329)
T ss_pred EECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEE
Confidence 99976422111 11 113578999999999999988754
No 124
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.99 E-value=1.6e-09 Score=109.80 Aligned_cols=106 Identities=17% Similarity=0.185 Sum_probs=79.4
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
..++|||||||+|.++..++++ ..+|++||+++.+++.+++..+ ..++++++.+|+.......++++||+|+
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~--~~~v~giD~s~~~l~~a~~~~~------~~~~i~~~~~d~~~~~~~~~~~~fD~I~ 108 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKK--AGQVIALDFIESVIKKNESING------HYKNVKFMCADVTSPDLNISDGSVDLIF 108 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHhc------cCCceEEEEecccccccCCCCCCEEEEe
Confidence 4569999999999999999987 3589999999999998876432 1357899999985432223467899999
Q ss_pred EcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 206 ~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
+...-...+... ..++++.+++.|+|||++++..
T Consensus 109 ~~~~l~~l~~~~--~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 109 SNWLLMYLSDKE--VENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred hhhhHHhCCHHH--HHHHHHHHHHhcCCCeEEEEEe
Confidence 765432222111 2578999999999999998853
No 125
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.99 E-value=1.6e-09 Score=96.87 Aligned_cols=105 Identities=16% Similarity=0.221 Sum_probs=75.3
Q ss_pred CCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
.++.++||||||.|..+..+++. .-.|+++|+++..++.+++.... .+-.++....|..++- . ++.||+|
T Consensus 29 ~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~-----~~l~i~~~~~Dl~~~~--~-~~~yD~I 98 (192)
T PF03848_consen 29 LKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEE-----EGLDIRTRVADLNDFD--F-PEEYDFI 98 (192)
T ss_dssp S-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHH-----TT-TEEEEE-BGCCBS----TTTEEEE
T ss_pred cCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhh-----cCceeEEEEecchhcc--c-cCCcCEE
Confidence 36789999999999999999998 35899999999999988775543 2234888899966552 2 4789999
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
++........... -...++.+.+.++|||++++.+
T Consensus 99 ~st~v~~fL~~~~--~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 99 VSTVVFMFLQREL--RPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp EEESSGGGS-GGG--HHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEEEeccCCHHH--HHHHHHHHHhhcCCcEEEEEEE
Confidence 9643322222221 2578999999999999987743
No 126
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.98 E-value=3.2e-09 Score=95.76 Aligned_cols=104 Identities=17% Similarity=0.243 Sum_probs=80.7
Q ss_pred CCceEEEEeccchHHHHHHHhcCCC-cEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSV-EKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~-~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
.+.+|||+|||+|..+..+++..+. .+++++|+++.+++.+++++. ...+++++.+|..+... +.++||+|
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~------~~~~i~~~~~d~~~~~~--~~~~~D~i 110 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE------LPLNIEFIQADAEALPF--EDNSFDAV 110 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc------cCCCceEEecchhcCCC--CCCcEEEE
Confidence 5679999999999999998887543 589999999999999998875 13578999999877542 25789999
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
++........ . ...+++.+.+.|+|||.+++..
T Consensus 111 ~~~~~~~~~~--~--~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 111 TIAFGLRNVT--D--IQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred EEeeeeCCcc--c--HHHHHHHHHHHcCCCcEEEEEE
Confidence 8743321111 1 2578999999999999998743
No 127
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.98 E-value=7.1e-09 Score=103.92 Aligned_cols=115 Identities=19% Similarity=0.298 Sum_probs=87.4
Q ss_pred CCCceEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccE
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHS-SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~-~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDv 203 (345)
....+|||+|||+|+.+..++... +..+|+++|+++..++.+++++... ++ .+++++.+|+..+.... .++||.
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~--g~--~~v~~~~~Da~~l~~~~-~~~fD~ 310 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRL--KL--SSIEIKIADAERLTEYV-QDTFDR 310 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHc--CC--CeEEEEECchhhhhhhh-hccCCE
Confidence 345799999999999999988763 3468999999999999999988754 22 35899999998764322 567999
Q ss_pred EEEcCCCCC-CCc---cc------------c--CcHHHHHHHHhccCCCcEEEEeccch
Q 019187 204 VIVDSSDPI-GPA---QE------------L--FEKPFFESVAKALRPGGVVSTQAESI 244 (345)
Q Consensus 204 Ii~D~~~p~-~~~---~~------------l--~t~ef~~~v~r~LkpgGvlv~~~~s~ 244 (345)
|++|++... +.. +. + ...+.+..+.+.|+|||+++..+++.
T Consensus 311 Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 311 ILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred EEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 999987521 110 00 0 13567889999999999998877664
No 128
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.97 E-value=3.3e-09 Score=101.50 Aligned_cols=106 Identities=19% Similarity=0.167 Sum_probs=79.0
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
...+|||||||+|..+..++++.+..+++++|+ +.+++.+++++... ++ ..|++++.+|+.+. . -..+|+|+
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~--gl-~~rv~~~~~d~~~~--~--~~~~D~v~ 220 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEK--GV-ADRMRGIAVDIYKE--S--YPEADAVL 220 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhC--Cc-cceEEEEecCccCC--C--CCCCCEEE
Confidence 457999999999999999998766678999998 78999999887653 22 35899999997642 1 23479988
Q ss_pred EcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 206 ~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
+...-+..... ....++++++++|+|||.+++..
T Consensus 221 ~~~~lh~~~~~--~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 221 FCRILYSANEQ--LSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred eEhhhhcCChH--HHHHHHHHHHHhcCCCCEEEEEE
Confidence 64332211111 12468999999999999998763
No 129
>PLN02672 methionine S-methyltransferase
Probab=98.97 E-value=1e-08 Score=111.56 Aligned_cols=151 Identities=15% Similarity=0.062 Sum_probs=100.1
Q ss_pred CcceEEEEcCeEeeeccchhHHHHHHHhcccccCCCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcc
Q 019187 91 TYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFF 170 (345)
Q Consensus 91 ~~g~~L~lDg~~q~~~~de~~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~ 170 (345)
.+|..+.++-.+-+.+++....-+.+...+-. ..++++|||||||+|.++..+++..+..+|+++|+++.+++.|+++.
T Consensus 84 F~~l~~~V~p~VLIPRpeTE~lve~L~~~~~~-~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na 162 (1082)
T PLN02672 84 RKKLTMMEIPSIFIPEDWSFTFYEGLNRHPDS-IFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINL 162 (1082)
T ss_pred ecCCceeeCCCcccCchhHHHHHHHHHhcccc-cCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 35666777766666665544333333221110 01246899999999999999988755679999999999999999987
Q ss_pred cccccC------------CCCCCEEEEEechHhHHhhCCCCCccEEEEcCCCC-C----C------------------Cc
Q 019187 171 PDVAVG------------FEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDP-I----G------------------PA 215 (345)
Q Consensus 171 ~~~~~~------------~~~~rv~v~~~D~~~~l~~~~~~~yDvIi~D~~~p-~----~------------------~~ 215 (345)
..+... ....|++++.+|..+.+... ..+||+||++++-- . . +.
T Consensus 163 ~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~-~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~ 241 (1082)
T PLN02672 163 YLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDN-NIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNY 241 (1082)
T ss_pred HHcCcccccccccccccccccccEEEEECchhhhcccc-CCceEEEEECCCcCCCcchhhcChhhhhccccccccccCcc
Confidence 653100 01147999999988776432 24799999977620 0 0 01
Q ss_pred cccCc-----------HHHHHHHHhccCCCcEEEEeccc
Q 019187 216 QELFE-----------KPFFESVAKALRPGGVVSTQAES 243 (345)
Q Consensus 216 ~~l~t-----------~ef~~~v~r~LkpgGvlv~~~~s 243 (345)
..|+. +.+++.+.+.|+|||.+++..+.
T Consensus 242 ~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~ 280 (1082)
T PLN02672 242 CALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGG 280 (1082)
T ss_pred ccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence 12222 45566667799999999997643
No 130
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.96 E-value=4.7e-09 Score=95.51 Aligned_cols=116 Identities=18% Similarity=0.272 Sum_probs=82.4
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccC----C------------------------
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVG----F------------------------ 177 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~----~------------------------ 177 (345)
.++.+|||||-.|.++..++++.+...|.+||||+..|+.|+++++..... .
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 578999999999999999999988889999999999999999987665210 0
Q ss_pred ----------CCCCEEEEEechHhHHhhCCCCCccEEEEcCCCCCCCc--cccCcHHHHHHHHhccCCCcEEEEeccchh
Q 019187 178 ----------EDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPA--QELFEKPFFESVAKALRPGGVVSTQAESIW 245 (345)
Q Consensus 178 ----------~~~rv~v~~~D~~~~l~~~~~~~yDvIi~D~~~p~~~~--~~l~t~ef~~~v~r~LkpgGvlv~~~~s~~ 245 (345)
...|..+-.. +|+.. ....||+|+|-+-.-|.+. ..---..||+.+.+.|.|||+||+.- .+|
T Consensus 138 t~~~p~n~~f~~~n~vle~~---dfl~~-~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP-QpW 212 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESD---DFLDM-IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP-QPW 212 (288)
T ss_pred cccCCcchhcccccEEEecc---hhhhh-ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC-Cch
Confidence 0011112222 34422 3678999998665444221 01112689999999999999999853 345
Q ss_pred h
Q 019187 246 L 246 (345)
Q Consensus 246 ~ 246 (345)
.
T Consensus 213 k 213 (288)
T KOG2899|consen 213 K 213 (288)
T ss_pred H
Confidence 3
No 131
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.96 E-value=1.5e-09 Score=96.69 Aligned_cols=104 Identities=17% Similarity=0.334 Sum_probs=78.6
Q ss_pred CceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEE-EEEechHhHHhhCCCCCccEEE
Q 019187 127 PKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVT-LHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 127 ~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~-v~~~D~~~~l~~~~~~~yDvIi 205 (345)
...||+||||+|..-... ...++.+||++|.++.|-+.+.+.+.+. ..+++. ++++|+.+.. +.++++||+|+
T Consensus 77 K~~vLEvgcGtG~Nfkfy-~~~p~~svt~lDpn~~mee~~~ks~~E~----k~~~~~~fvva~ge~l~-~l~d~s~DtVV 150 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFY-PWKPINSVTCLDPNEKMEEIADKSAAEK----KPLQVERFVVADGENLP-QLADGSYDTVV 150 (252)
T ss_pred ccceEEecccCCCCcccc-cCCCCceEEEeCCcHHHHHHHHHHHhhc----cCcceEEEEeechhcCc-ccccCCeeeEE
Confidence 347899999999876543 2225789999999999999999887764 456777 8999988754 34589999999
Q ss_pred EcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEe
Q 019187 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (345)
Q Consensus 206 ~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~ 240 (345)
+-..- +.... ..+.++++.|+|+|||++++-
T Consensus 151 ~TlvL--CSve~--~~k~L~e~~rlLRpgG~iifi 181 (252)
T KOG4300|consen 151 CTLVL--CSVED--PVKQLNEVRRLLRPGGRIIFI 181 (252)
T ss_pred EEEEE--eccCC--HHHHHHHHHHhcCCCcEEEEE
Confidence 74321 11000 257899999999999999874
No 132
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.96 E-value=2.4e-08 Score=95.55 Aligned_cols=112 Identities=16% Similarity=0.112 Sum_probs=77.1
Q ss_pred CCCceEEEEeccchHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCC---CC
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHSS-VEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPE---GT 200 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~~-~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~---~~ 200 (345)
+.+.+|||+|||+|..++.+++... ..++++||++++|++.|++.+... +..-++..+++|..+.+.-... ..
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~---~p~~~v~~i~gD~~~~~~~~~~~~~~~ 138 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAAD---YPQLEVHGICADFTQPLALPPEPAAGR 138 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhh---CCCceEEEEEEcccchhhhhcccccCC
Confidence 3457899999999999999988743 468999999999999998876531 1223567789998764321101 12
Q ss_pred ccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 201 YDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 201 yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
..+++++++-....... ...+++.+++.|+|||.|++..
T Consensus 139 ~~~~~~gs~~~~~~~~e--~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 139 RLGFFPGSTIGNFTPEE--AVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred eEEEEecccccCCCHHH--HHHHHHHHHHhcCCCCEEEEec
Confidence 23444444332222221 2579999999999999999754
No 133
>PTZ00146 fibrillarin; Provisional
Probab=98.96 E-value=4.2e-08 Score=92.84 Aligned_cols=150 Identities=15% Similarity=0.113 Sum_probs=92.9
Q ss_pred CCCCceEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHh-hCCCCCc
Q 019187 124 IPNPKKVLVIGGGDGGVLREVSRHS-SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLK-AVPEGTY 201 (345)
Q Consensus 124 ~~~~~~VL~IG~G~G~~~~~ll~~~-~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~-~~~~~~y 201 (345)
.....+|||||||+|.++..+++.- +...|++||+++.+.+...+.... .+++..+.+|+..-.. ....+.+
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~------r~NI~~I~~Da~~p~~y~~~~~~v 203 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK------RPNIVPIIEDARYPQKYRMLVPMV 203 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh------cCCCEEEECCccChhhhhcccCCC
Confidence 3445699999999999999999873 235899999998755333332221 1468889999764211 1113579
Q ss_pred cEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec--cchhh---hhhHHHHHHHHHHhh-cCCcceEEEEEEee
Q 019187 202 DAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA--ESIWL---HMHIIEDIVANCRQI-FKGSVNYAWTTVPT 275 (345)
Q Consensus 202 DvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~--~s~~~---~~~~~~~i~~~l~~~-F~~~v~~~~~~vP~ 275 (345)
|+|++|...|+. ...+..++.+.|||||.|++.. .+... ..+.+.+-++.+++. |+. +. ...++-
T Consensus 204 DvV~~Dva~pdq------~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~-~e--~v~L~P 274 (293)
T PTZ00146 204 DVIFADVAQPDQ------ARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKP-KE--QLTLEP 274 (293)
T ss_pred CEEEEeCCCcch------HHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCce-EE--EEecCC
Confidence 999999865432 1345668899999999988732 22211 123344445777776 743 22 233444
Q ss_pred cCCCcEEEEEEecC
Q 019187 276 YPSGVIGFMLCSTE 289 (345)
Q Consensus 276 y~~g~w~~~~ask~ 289 (345)
|... -.++++...
T Consensus 275 y~~~-h~~v~~~~~ 287 (293)
T PTZ00146 275 FERD-HAVVIGVYR 287 (293)
T ss_pred ccCC-cEEEEEEEc
Confidence 5432 344555443
No 134
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.95 E-value=6.8e-09 Score=90.79 Aligned_cols=111 Identities=23% Similarity=0.425 Sum_probs=76.8
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
+..||||||||+|.++..|++..-....++||.++..+++|+...... ++.+ .+++.+.|..+- +...++||+|+
T Consensus 67 ~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~--~~~n-~I~f~q~DI~~~--~~~~~qfdlvl 141 (227)
T KOG1271|consen 67 QADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERD--GFSN-EIRFQQLDITDP--DFLSGQFDLVL 141 (227)
T ss_pred cccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhc--CCCc-ceeEEEeeccCC--cccccceeEEe
Confidence 345999999999999999998632345999999999999997654432 3333 488999997653 11256777766
Q ss_pred E----cCC--CCCCCccccCcHHHHHHHHhccCCCcEEEEeccc
Q 019187 206 V----DSS--DPIGPAQELFEKPFFESVAKALRPGGVVSTQAES 243 (345)
Q Consensus 206 ~----D~~--~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s 243 (345)
= |+- .|..+...+ .-++..+.+.|+|||+|++.+++
T Consensus 142 DKGT~DAisLs~d~~~~r~--~~Y~d~v~~ll~~~gifvItSCN 183 (227)
T KOG1271|consen 142 DKGTLDAISLSPDGPVGRL--VVYLDSVEKLLSPGGIFVITSCN 183 (227)
T ss_pred ecCceeeeecCCCCcccce--eeehhhHhhccCCCcEEEEEecC
Confidence 3 111 122222222 34677888999999999997654
No 135
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.95 E-value=9.5e-09 Score=103.39 Aligned_cols=102 Identities=19% Similarity=0.203 Sum_probs=79.3
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhh--CCCCCccE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKA--VPEGTYDA 203 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~--~~~~~yDv 203 (345)
...+|||+|||+|.++..+++.. .+|+++|+++.+++.|++++... ++ .+++++.+|+.+++.. ..+++||+
T Consensus 297 ~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~--~~--~~v~~~~~d~~~~l~~~~~~~~~fD~ 370 (443)
T PRK13168 297 PGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRN--GL--DNVTFYHANLEEDFTDQPWALGGFDK 370 (443)
T ss_pred CCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHc--CC--CceEEEEeChHHhhhhhhhhcCCCCE
Confidence 45799999999999999999873 68999999999999999987654 22 3699999999887643 12467999
Q ss_pred EEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 204 Ii~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
|++|++... . .+.++.+.+ |+|++++.+.+
T Consensus 371 Vi~dPPr~g-~------~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 371 VLLDPPRAG-A------AEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred EEECcCCcC-h------HHHHHHHHh-cCCCeEEEEEe
Confidence 999976431 1 245566655 68999988865
No 136
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.94 E-value=3.3e-08 Score=99.10 Aligned_cols=103 Identities=15% Similarity=0.132 Sum_probs=80.6
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhC--CCCCccE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV--PEGTYDA 203 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~--~~~~yDv 203 (345)
+..+|||+|||+|.++..+++. ..+|++||+++.+++.|++++... .-.+++++.+|+.+++... ..++||+
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~--~~~V~~vE~~~~av~~a~~n~~~~----~~~nv~~~~~d~~~~l~~~~~~~~~~D~ 365 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQ--AKSVVGIEVVPESVEKAQQNAELN----GIANVEFLAGTLETVLPKQPWAGQIPDV 365 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHh--CCEEEEEEcCHHHHHHHHHHHHHh----CCCceEEEeCCHHHHHHHHHhcCCCCCE
Confidence 4579999999999999999987 468999999999999999988654 2247999999998876542 2357999
Q ss_pred EEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 204 Ii~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
|++|++.. +. ..++++.+.+ |+|++++.+.+
T Consensus 366 vi~dPPr~-G~-----~~~~l~~l~~-l~~~~ivyvsc 396 (431)
T TIGR00479 366 LLLDPPRK-GC-----AAEVLRTIIE-LKPERIVYVSC 396 (431)
T ss_pred EEECcCCC-CC-----CHHHHHHHHh-cCCCEEEEEcC
Confidence 99997642 21 2467776664 89999877643
No 137
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.94 E-value=5.7e-09 Score=95.04 Aligned_cols=111 Identities=17% Similarity=0.128 Sum_probs=75.8
Q ss_pred CCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccc--------cCCCCCCEEEEEechHhHHhhC
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVA--------VGFEDPRVTLHIGDGVAFLKAV 196 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~--------~~~~~~rv~v~~~D~~~~l~~~ 196 (345)
+...+||++|||.|..+..++++ .-+|++||+++..++.+.+...... ......+++++++|..++-...
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 34579999999999999999988 4589999999999998643211100 0012457999999987763321
Q ss_pred CCCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEe
Q 019187 197 PEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (345)
Q Consensus 197 ~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~ 240 (345)
.++||.|+-...-. ..+... ...+++.+.++|+|||++++.
T Consensus 111 -~~~fD~i~D~~~~~-~l~~~~-R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 111 -LGPVDAVYDRAALI-ALPEEM-RQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred -CCCcCEEEechhhc-cCCHHH-HHHHHHHHHHHcCCCCeEEEE
Confidence 36799887432211 111111 356899999999999975543
No 138
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.94 E-value=8.9e-09 Score=93.66 Aligned_cols=102 Identities=17% Similarity=0.222 Sum_probs=75.2
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
...+|||||||+|.++..+++. ..+|+++|+++++++.|++.++.. . ...++++..+|+... .++||+|+
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~--~-~~~~i~~~~~d~~~~-----~~~fD~ii 124 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGR--D-VAGNVEFEVNDLLSL-----CGEFDIVV 124 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhc--C-CCCceEEEECChhhC-----CCCcCEEE
Confidence 5689999999999999999887 358999999999999999987643 1 123789999996543 37899998
Q ss_pred Ec-CCCCCCCccccCcHHHHHHHHhccCCCcEEEEe
Q 019187 206 VD-SSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (345)
Q Consensus 206 ~D-~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~ 240 (345)
+- ..... +... ...+++.+.+.+++++++...
T Consensus 125 ~~~~l~~~-~~~~--~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 125 CMDVLIHY-PASD--MAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred EhhHHHhC-CHHH--HHHHHHHHHHHhCCCEEEEEC
Confidence 62 22111 1111 246788899889877766653
No 139
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.94 E-value=4e-09 Score=90.05 Aligned_cols=96 Identities=23% Similarity=0.402 Sum_probs=69.0
Q ss_pred CCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
+..++|||||||+|.++..+.+.+ .+++++|+++.+++. .+ +.....+...... ++++||+|
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~~g~D~~~~~~~~--~~------------~~~~~~~~~~~~~--~~~~fD~i 82 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRG--FEVTGVDISPQMIEK--RN------------VVFDNFDAQDPPF--PDGSFDLI 82 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTT--SEEEEEESSHHHHHH--TT------------SEEEEEECHTHHC--HSSSEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhC--CEEEEEECCHHHHhh--hh------------hhhhhhhhhhhhc--cccchhhH
Confidence 567899999999999999997773 399999999999988 11 1111222122221 26899999
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEecc
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAE 242 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~ 242 (345)
++...-...+. -..+++.+.++|+|||.+++...
T Consensus 83 ~~~~~l~~~~d----~~~~l~~l~~~LkpgG~l~~~~~ 116 (161)
T PF13489_consen 83 ICNDVLEHLPD----PEEFLKELSRLLKPGGYLVISDP 116 (161)
T ss_dssp EEESSGGGSSH----HHHHHHHHHHCEEEEEEEEEEEE
T ss_pred hhHHHHhhccc----HHHHHHHHHHhcCCCCEEEEEEc
Confidence 98544322221 25899999999999999998753
No 140
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.93 E-value=9.6e-09 Score=102.88 Aligned_cols=117 Identities=14% Similarity=0.232 Sum_probs=83.7
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
...+|||+|||.|+.+..+++..+..+|+++|+++.+++.+++++... ++. .++.+..+|+.......+.++||.|+
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~--g~~-~~v~~~~~d~~~~~~~~~~~~fD~Vl 314 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRL--GLT-IKAETKDGDGRGPSQWAENEQFDRIL 314 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHc--CCC-eEEEEeccccccccccccccccCEEE
Confidence 457999999999999999988644568999999999999999988754 222 23444666654322111246799999
Q ss_pred EcCCCCC-CC----cccc-------------CcHHHHHHHHhccCCCcEEEEeccchh
Q 019187 206 VDSSDPI-GP----AQEL-------------FEKPFFESVAKALRPGGVVSTQAESIW 245 (345)
Q Consensus 206 ~D~~~p~-~~----~~~l-------------~t~ef~~~v~r~LkpgGvlv~~~~s~~ 245 (345)
+|++... +. +... ...++++.+.+.|||||.++..+.+..
T Consensus 315 lDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 315 LDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred EcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 9976421 11 1100 125789999999999999998876654
No 141
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.93 E-value=6.6e-09 Score=95.19 Aligned_cols=104 Identities=18% Similarity=0.256 Sum_probs=80.1
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
...+||+||||+|.++..+++. ..+++++|+++.+++.+++++... ..+++++..|..++.... .++||+|+
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~fD~Ii 119 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALES-----GLKIDYRQTTAEELAAEH-PGQFDVVT 119 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHc-----CCceEEEecCHHHhhhhc-CCCccEEE
Confidence 4679999999999999998887 357999999999999999877542 235788888887776433 57899999
Q ss_pred EcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 206 ~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
+...-...+. ...+++.+.+.|+|||.+++..
T Consensus 120 ~~~~l~~~~~----~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 120 CMEMLEHVPD----PASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred EhhHhhccCC----HHHHHHHHHHHcCCCcEEEEEe
Confidence 7432211111 2478999999999999998764
No 142
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.91 E-value=7.9e-09 Score=93.88 Aligned_cols=105 Identities=16% Similarity=0.220 Sum_probs=80.2
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
.+.+|||||||+|.++..+++.. .+++++|+++.+++.+++++... ...++++..+|+.++.... .++||+|+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~----~~~~~~~~~~d~~~~~~~~-~~~~D~i~ 117 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKD----PLLKIEYRCTSVEDLAEKG-AKSFDVVT 117 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHc----CCCceEEEeCCHHHhhcCC-CCCccEEE
Confidence 46799999999999999888763 46999999999999999877642 1126889999988876533 47899999
Q ss_pred EcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 206 ~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
+...-.... . ...+++.+.+.|+|||.+++..
T Consensus 118 ~~~~l~~~~--~--~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 118 CMEVLEHVP--D--PQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred ehhHHHhCC--C--HHHHHHHHHHhcCCCcEEEEEe
Confidence 753211111 1 2578999999999999988754
No 143
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.91 E-value=1.6e-08 Score=97.42 Aligned_cols=103 Identities=18% Similarity=0.244 Sum_probs=78.7
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
.+.+|||+|||+|.++..+++. ..+|+++|+++.+++.|++++... ++ .+++++.+|+.++.... .++||+|+
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~--~l--~~v~~~~~D~~~~~~~~-~~~~D~Vv 245 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAEL--GL--TNVQFQALDSTQFATAQ-GEVPDLVL 245 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHc--CC--CceEEEEcCHHHHHHhc-CCCCeEEE
Confidence 3579999999999999999986 368999999999999999987654 22 47999999999887543 45799999
Q ss_pred EcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEecc
Q 019187 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAE 242 (345)
Q Consensus 206 ~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~ 242 (345)
+|++.. +. ..+..+.+. .++|++++.+.+.
T Consensus 246 ~dPPr~-G~-----~~~~~~~l~-~~~~~~ivyvsc~ 275 (315)
T PRK03522 246 VNPPRR-GI-----GKELCDYLS-QMAPRFILYSSCN 275 (315)
T ss_pred ECCCCC-Cc-----cHHHHHHHH-HcCCCeEEEEECC
Confidence 996532 11 234444443 4788888887553
No 144
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.90 E-value=1.7e-08 Score=101.31 Aligned_cols=116 Identities=16% Similarity=0.253 Sum_probs=86.5
Q ss_pred CCCceEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhC--CCCCc
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRH-SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV--PEGTY 201 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~-~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~--~~~~y 201 (345)
....+|||+|||.|+.+..+++. .+..+|+++|+++.+++.+++++... ++ .+++++.+|+..+.... ..++|
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~--g~--~~v~~~~~D~~~~~~~~~~~~~~f 326 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRL--GL--KSIKILAADSRNLLELKPQWRGYF 326 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHc--CC--CeEEEEeCChhhcccccccccccC
Confidence 34579999999999999998876 33458999999999999999988754 22 36999999988764211 14689
Q ss_pred cEEEEcCCCCC-CC----cccc-------------CcHHHHHHHHhccCCCcEEEEeccch
Q 019187 202 DAVIVDSSDPI-GP----AQEL-------------FEKPFFESVAKALRPGGVVSTQAESI 244 (345)
Q Consensus 202 DvIi~D~~~p~-~~----~~~l-------------~t~ef~~~v~r~LkpgGvlv~~~~s~ 244 (345)
|.|++|++... +. +... ...++++.+.+.|||||.|+..+.+.
T Consensus 327 D~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 327 DRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred CEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 99999986421 11 0000 03578999999999999998766543
No 145
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=1.3e-08 Score=89.63 Aligned_cols=93 Identities=19% Similarity=0.341 Sum_probs=74.5
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
+.+.|+|+|||+|.++..++-. +..+|++||+|++.+++++++..+. ..+++++++|..++ ..++|.+|
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~l-Ga~~V~~vdiD~~a~ei~r~N~~~l-----~g~v~f~~~dv~~~-----~~~~dtvi 113 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALL-GASRVLAVDIDPEALEIARANAEEL-----LGDVEFVVADVSDF-----RGKFDTVI 113 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhc-CCcEEEEEecCHHHHHHHHHHHHhh-----CCceEEEEcchhhc-----CCccceEE
Confidence 4678999999999999988777 4679999999999999999998763 35899999997776 68899999
Q ss_pred EcCCCCCCCccccCcHHHHHHHHhcc
Q 019187 206 VDSSDPIGPAQELFEKPFFESVAKAL 231 (345)
Q Consensus 206 ~D~~~p~~~~~~l~t~ef~~~v~r~L 231 (345)
+|++- +....-.+.+|++...+.-
T Consensus 114 mNPPF--G~~~rhaDr~Fl~~Ale~s 137 (198)
T COG2263 114 MNPPF--GSQRRHADRPFLLKALEIS 137 (198)
T ss_pred ECCCC--ccccccCCHHHHHHHHHhh
Confidence 88754 3322224678888777655
No 146
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.90 E-value=2e-09 Score=97.21 Aligned_cols=133 Identities=17% Similarity=0.247 Sum_probs=83.2
Q ss_pred CeEeeeccchhHHHHHHHhccccc---CCCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccC
Q 019187 100 GVIQLTERDECAYQEMITHLPLCS---IPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVG 176 (345)
Q Consensus 100 g~~q~~~~de~~Y~e~l~~l~l~~---~~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~ 176 (345)
|-.++++.|-..-...|..+.... .....++||+|+|-|.++..++-.. ..+|++||..+..++.|++++...
T Consensus 26 G~~~is~~Di~gS~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~--- 101 (218)
T PF05891_consen 26 GFGHISRIDIQGSRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKD--- 101 (218)
T ss_dssp T-GGGHHHHHHHHHHHHHCCCT---------SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCG---
T ss_pred CCCCCChHHHHHHHHHHHHHHhhcccCCCCcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhccc---
Confidence 444555555544455565543321 1245799999999999999876553 679999999999999999988652
Q ss_pred CCCCCEEEEEechHhHHhhCCCCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 177 FEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 177 ~~~~rv~v~~~D~~~~l~~~~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
.....++++.-..+|... +.+||+|.+-..-..-.... -.+|++.|++.|+|+|++++--
T Consensus 102 -~~~v~~~~~~gLQ~f~P~--~~~YDlIW~QW~lghLTD~d--lv~fL~RCk~~L~~~G~IvvKE 161 (218)
T PF05891_consen 102 -NPRVGEFYCVGLQDFTPE--EGKYDLIWIQWCLGHLTDED--LVAFLKRCKQALKPNGVIVVKE 161 (218)
T ss_dssp -GCCEEEEEES-GGG------TT-EEEEEEES-GGGS-HHH--HHHHHHHHHHHEEEEEEEEEEE
T ss_pred -CCCcceEEecCHhhccCC--CCcEeEEEehHhhccCCHHH--HHHHHHHHHHhCcCCcEEEEEe
Confidence 223356777777777543 57999999843321111111 2579999999999999999843
No 147
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.89 E-value=1.9e-08 Score=99.04 Aligned_cols=102 Identities=15% Similarity=0.183 Sum_probs=80.6
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
..++|||+|||+|.++..++.. ..+|++||+|+..++.|++++... +. .+++++.+|+.+++... .++||+|+
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~--~~--~~~~~~~~d~~~~~~~~-~~~~D~vi 305 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQML--GL--DNLSFAALDSAKFATAQ-MSAPELVL 305 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHc--CC--CcEEEEECCHHHHHHhc-CCCCCEEE
Confidence 3479999999999999999865 368999999999999999988654 22 37999999999887543 35699999
Q ss_pred EcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 206 ~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
+|++.. +. ..++.+.+. .++|++++.+.+
T Consensus 306 ~DPPr~-G~-----~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 306 VNPPRR-GI-----GKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred ECCCCC-CC-----cHHHHHHHH-hcCCCeEEEEEe
Confidence 997642 21 346666665 479999988864
No 148
>PRK05785 hypothetical protein; Provisional
Probab=98.86 E-value=2.6e-08 Score=91.42 Aligned_cols=91 Identities=13% Similarity=0.127 Sum_probs=68.8
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
.+.+|||||||+|.+++.+++.. ..+|+++|++++|++.|++.. ..+++|+... . .++++||+|+
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~------------~~~~~d~~~l-p-~~d~sfD~v~ 115 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVAD------------DKVVGSFEAL-P-FRDKSFDVVM 115 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhcc------------ceEEechhhC-C-CCCCCEEEEE
Confidence 36799999999999999998874 358999999999999998631 2456787654 2 3478999999
Q ss_pred EcCCCCCCCccccCcHHHHHHHHhccCCCc
Q 019187 206 VDSSDPIGPAQELFEKPFFESVAKALRPGG 235 (345)
Q Consensus 206 ~D~~~p~~~~~~l~t~ef~~~v~r~LkpgG 235 (345)
+...-.... . ....+++++|+|||.+
T Consensus 116 ~~~~l~~~~--d--~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 116 SSFALHASD--N--IEKVIAEFTRVSRKQV 141 (226)
T ss_pred ecChhhccC--C--HHHHHHHHHHHhcCce
Confidence 754332111 1 2578999999999953
No 149
>PRK06202 hypothetical protein; Provisional
Probab=98.86 E-value=1.3e-08 Score=93.38 Aligned_cols=102 Identities=18% Similarity=0.162 Sum_probs=71.3
Q ss_pred CCCceEEEEeccchHHHHHHHhc----CCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCC
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRH----SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGT 200 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~----~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~ 200 (345)
.++.+|||||||+|.++..++++ ....+|+++|+++.+++.|++.... +++++...|+..... ++++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~-------~~~~~~~~~~~~l~~--~~~~ 129 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR-------PGVTFRQAVSDELVA--EGER 129 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc-------CCCeEEEEecccccc--cCCC
Confidence 45679999999999998888753 2235899999999999999987542 345666665543321 3678
Q ss_pred ccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEE
Q 019187 201 YDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVS 238 (345)
Q Consensus 201 yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv 238 (345)
||+|++...-+..+... ...+++.++++++ +++++
T Consensus 130 fD~V~~~~~lhh~~d~~--~~~~l~~~~r~~~-~~~~i 164 (232)
T PRK06202 130 FDVVTSNHFLHHLDDAE--VVRLLADSAALAR-RLVLH 164 (232)
T ss_pred ccEEEECCeeecCChHH--HHHHHHHHHHhcC-eeEEE
Confidence 99999865433222211 2468999999998 44444
No 150
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.84 E-value=4.2e-08 Score=100.25 Aligned_cols=115 Identities=16% Similarity=0.130 Sum_probs=91.9
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
+..-+||||||.|..+.++++..+...+.+||+....+..+.+..... +-.++.++.+|+..+....++++.|.|+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~----~l~N~~~~~~~~~~~~~~~~~~sv~~i~ 422 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQ----NITNFLLFPNNLDLILNDLPNNSLDGIY 422 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHc----CCCeEEEEcCCHHHHHHhcCcccccEEE
Confidence 345799999999999999988766789999999987666555443321 2247888999876665556678899999
Q ss_pred EcCCCCCCC----ccccCcHHHHHHHHhccCCCcEEEEeccch
Q 019187 206 VDSSDPIGP----AQELFEKPFFESVAKALRPGGVVSTQAESI 244 (345)
Q Consensus 206 ~D~~~p~~~----~~~l~t~ef~~~v~r~LkpgGvlv~~~~s~ 244 (345)
+..+|||.. ...+.+.+|++.+++.|+|||.+-+.+.+.
T Consensus 423 i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~ 465 (506)
T PRK01544 423 ILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIE 465 (506)
T ss_pred EECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCH
Confidence 999999943 467899999999999999999999877553
No 151
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.84 E-value=2e-08 Score=91.85 Aligned_cols=108 Identities=18% Similarity=0.084 Sum_probs=74.6
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccc--------cCCCCCCEEEEEechHhHHhhCC
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVA--------VGFEDPRVTLHIGDGVAFLKAVP 197 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~--------~~~~~~rv~v~~~D~~~~l~~~~ 197 (345)
...+||++|||.|..+..++++ .-+|++||+++..++.+.+...... ......+++++++|..++....
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~- 113 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD- 113 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc-
Confidence 4579999999999999999988 4589999999999997643211100 0123568999999988774321
Q ss_pred CCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEE
Q 019187 198 EGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVS 238 (345)
Q Consensus 198 ~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv 238 (345)
...||+|+--..-...+. . ....+++.+.++|+|||+++
T Consensus 114 ~~~fd~v~D~~~~~~l~~-~-~R~~~~~~l~~lL~pgG~~~ 152 (218)
T PRK13255 114 LADVDAVYDRAALIALPE-E-MRERYVQQLAALLPAGCRGL 152 (218)
T ss_pred CCCeeEEEehHhHhhCCH-H-HHHHHHHHHHHHcCCCCeEE
Confidence 357998883221111111 1 13578999999999998643
No 152
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.83 E-value=3.5e-08 Score=89.86 Aligned_cols=102 Identities=19% Similarity=0.317 Sum_probs=71.3
Q ss_pred CCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
....+|||||||+|.++..+++.. .+|+++|+++.+++.|++.+... +. ..+++++.+|. . .. .+.||+|
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~--~~-~~~i~~~~~d~-~---~~-~~~fD~v 131 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEA--GL-AGNITFEVGDL-E---SL-LGRFDTV 131 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhc--CC-ccCcEEEEcCc-h---hc-cCCcCEE
Confidence 356799999999999999998873 46999999999999999987643 11 14789999992 2 22 5789999
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccCCCcEEE
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVS 238 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv 238 (345)
++...-...+... ....++.+.+.+++++++.
T Consensus 132 ~~~~~l~~~~~~~--~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 132 VCLDVLIHYPQED--AARMLAHLASLTRGSLIFT 163 (230)
T ss_pred EEcchhhcCCHHH--HHHHHHHHHhhcCCeEEEE
Confidence 9743221111111 2456777777765555444
No 153
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.83 E-value=5.1e-08 Score=86.35 Aligned_cols=110 Identities=18% Similarity=0.266 Sum_probs=84.5
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCC-CCccEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPE-GTYDAV 204 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~-~~yDvI 204 (345)
...++||+-+|+|+++.|.+.+ +..+++.||.|...+...+++.... + -..+++++..|+..+++.... +.||+|
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSR-GA~~~~~vE~~~~a~~~l~~N~~~l--~-~~~~~~~~~~da~~~L~~~~~~~~FDlV 118 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSR-GAARVVFVEKDRKAVKILKENLKAL--G-LEGEARVLRNDALRALKQLGTREPFDLV 118 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhC-CCceEEEEecCHHHHHHHHHHHHHh--C-CccceEEEeecHHHHHHhcCCCCcccEE
Confidence 5679999999999999999888 4789999999999999999997764 1 146899999999988877622 249999
Q ss_pred EEcCCCCCCCccccCcHHHHHH--HHhccCCCcEEEEecc
Q 019187 205 IVDSSDPIGPAQELFEKPFFES--VAKALRPGGVVSTQAE 242 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~--v~r~LkpgGvlv~~~~ 242 (345)
++|++-..+.... ..-+.. -...|+|+|.+++...
T Consensus 119 flDPPy~~~l~~~---~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 119 FLDPPYAKGLLDK---ELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred EeCCCCccchhhH---HHHHHHHHhcCCcCCCcEEEEEeC
Confidence 9998765333211 122222 2467999999998653
No 154
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.82 E-value=1.2e-07 Score=86.00 Aligned_cols=123 Identities=23% Similarity=0.339 Sum_probs=94.6
Q ss_pred eeccchhHHHHHHHhcccccCCCCceEEEEeccchHHHHHHHh-cCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCE
Q 019187 104 LTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSR-HSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRV 182 (345)
Q Consensus 104 ~~~~de~~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~ll~-~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv 182 (345)
...+++..+-.|+..+ -+++++|+||.-+|..+..++. .|...+|+++|+|+...+++.+....- --+.++
T Consensus 56 ~v~~d~g~fl~~li~~-----~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~a---gv~~KI 127 (237)
T KOG1663|consen 56 LVGPDKGQFLQMLIRL-----LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLA---GVDHKI 127 (237)
T ss_pred ecChHHHHHHHHHHHH-----hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhc---ccccee
Confidence 3344555566666542 3789999999999998888765 477789999999999999997654331 235689
Q ss_pred EEEEechHhHHhhC----CCCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 183 TLHIGDGVAFLKAV----PEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 183 ~v~~~D~~~~l~~~----~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
+++.+++.+-+.+. +.++||++++|..-. .|. .+|+.+.+.|++||++++.-
T Consensus 128 ~~i~g~a~esLd~l~~~~~~~tfDfaFvDadK~------nY~-~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 128 TFIEGPALESLDELLADGESGTFDFAFVDADKD------NYS-NYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred eeeecchhhhHHHHHhcCCCCceeEEEEccchH------HHH-HHHHHHHhhcccccEEEEec
Confidence 99999998876543 457899999997643 223 89999999999999998864
No 155
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.81 E-value=9e-09 Score=93.71 Aligned_cols=107 Identities=16% Similarity=0.270 Sum_probs=80.8
Q ss_pred CCCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccE
Q 019187 124 IPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (345)
Q Consensus 124 ~~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDv 203 (345)
+...+.++|+|||+|..++-++.|+ ++|+++|+++.|+++|+++.+.. +.+-..++...+..+++- .+++.|+
T Consensus 31 ~~~h~~a~DvG~G~Gqa~~~iae~~--k~VIatD~s~~mL~~a~k~~~~~---y~~t~~~ms~~~~v~L~g--~e~SVDl 103 (261)
T KOG3010|consen 31 TEGHRLAWDVGTGNGQAARGIAEHY--KEVIATDVSEAMLKVAKKHPPVT---YCHTPSTMSSDEMVDLLG--GEESVDL 103 (261)
T ss_pred CCCcceEEEeccCCCcchHHHHHhh--hhheeecCCHHHHHHhhcCCCcc---cccCCccccccccccccC--CCcceee
Confidence 4455689999999999999999995 68999999999999999988753 223334555556566553 2688999
Q ss_pred EEEcCCCCCCCccccCcHHHHHHHHhccCCCc-EEEEecc
Q 019187 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGG-VVSTQAE 242 (345)
Q Consensus 204 Ii~D~~~p~~~~~~l~t~ef~~~v~r~LkpgG-vlv~~~~ 242 (345)
|++--.-++.. ..+||+.++|+||++| ++++...
T Consensus 104 I~~Aqa~HWFd-----le~fy~~~~rvLRk~Gg~iavW~Y 138 (261)
T KOG3010|consen 104 ITAAQAVHWFD-----LERFYKEAYRVLRKDGGLIAVWNY 138 (261)
T ss_pred ehhhhhHHhhc-----hHHHHHHHHHHcCCCCCEEEEEEc
Confidence 99654334332 3689999999999877 7777653
No 156
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.81 E-value=1.6e-07 Score=92.17 Aligned_cols=99 Identities=16% Similarity=0.225 Sum_probs=76.5
Q ss_pred ceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCC----------
Q 019187 128 KKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVP---------- 197 (345)
Q Consensus 128 ~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~---------- 197 (345)
.+|||++||+|.++..+++. ..+|++||+++.+++.+++++... +. .+++++.+|+.++++...
T Consensus 208 ~~vLDl~~G~G~~sl~la~~--~~~v~~vE~~~~ai~~a~~N~~~~--~~--~~v~~~~~d~~~~l~~~~~~~~~~~~~~ 281 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARN--FRRVLATEISKPSVAAAQYNIAAN--GI--DNVQIIRMSAEEFTQAMNGVREFNRLKG 281 (362)
T ss_pred CeEEEEeccccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHHh--CC--CcEEEEECCHHHHHHHHhhccccccccc
Confidence 57999999999999988887 468999999999999999987654 22 379999999999876421
Q ss_pred ----CCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 198 ----EGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 198 ----~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
..+||+|++|++. .+. ..+.++.+.+ +++++.+.+
T Consensus 282 ~~~~~~~~D~v~lDPPR-~G~-----~~~~l~~l~~---~~~ivyvSC 320 (362)
T PRK05031 282 IDLKSYNFSTIFVDPPR-AGL-----DDETLKLVQA---YERILYISC 320 (362)
T ss_pred ccccCCCCCEEEECCCC-CCC-----cHHHHHHHHc---cCCEEEEEe
Confidence 1259999999874 221 3456666654 688887754
No 157
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.79 E-value=3.9e-08 Score=97.02 Aligned_cols=100 Identities=24% Similarity=0.335 Sum_probs=82.5
Q ss_pred ceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEEEc
Q 019187 128 KKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVD 207 (345)
Q Consensus 128 ~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi~D 207 (345)
.+|||++||+|..+..+++..+..+|+++|+++..++.+++++..+ + -.+++++.+|+..++.. .++||+|++|
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N--~--~~~~~v~~~Da~~~l~~--~~~fD~V~lD 132 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELN--G--LENEKVFNKDANALLHE--ERKFDVVDID 132 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh--C--CCceEEEhhhHHHHHhh--cCCCCEEEEC
Confidence 5899999999999999987655678999999999999999998654 2 23577999999988763 4679999999
Q ss_pred CCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 208 SSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 208 ~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
++ +. ..+|+....+.+++||++.+.+
T Consensus 133 P~---Gs-----~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 133 PF---GS-----PAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred CC---CC-----cHHHHHHHHHHhcCCCEEEEEe
Confidence 75 22 2478888788899999998866
No 158
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.79 E-value=2.5e-07 Score=90.51 Aligned_cols=100 Identities=14% Similarity=0.152 Sum_probs=76.5
Q ss_pred CceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhC---------C
Q 019187 127 PKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV---------P 197 (345)
Q Consensus 127 ~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~---------~ 197 (345)
+.+|||+|||+|.++..+++.. .+|++||+++.+++.|++++... +. .+++++.+|+.+++... .
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~--~~--~~v~~~~~d~~~~~~~~~~~~~~~~~~ 271 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAAN--NI--DNVQIIRMSAEEFTQAMNGVREFRRLK 271 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHc--CC--CcEEEEEcCHHHHHHHHhhcccccccc
Confidence 3579999999999999888873 58999999999999999987654 22 36999999999988641 0
Q ss_pred -----CCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 198 -----EGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 198 -----~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
...||+|++|++. .+. ..++++.+.+ |++++.+.+
T Consensus 272 ~~~~~~~~~d~v~lDPPR-~G~-----~~~~l~~l~~---~~~ivYvsC 311 (353)
T TIGR02143 272 GIDLKSYNCSTIFVDPPR-AGL-----DPDTCKLVQA---YERILYISC 311 (353)
T ss_pred ccccccCCCCEEEECCCC-CCC-----cHHHHHHHHc---CCcEEEEEc
Confidence 1248999999874 232 2455666554 788888865
No 159
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.78 E-value=3.5e-08 Score=87.62 Aligned_cols=72 Identities=26% Similarity=0.259 Sum_probs=61.3
Q ss_pred CCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
+...||||||||+|.++..+.+.. ..+..+||||++-+..|.+. .+.++.+|+.+.+...++++||.|
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k-~v~g~GvEid~~~v~~cv~r-----------Gv~Viq~Dld~gL~~f~d~sFD~V 79 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEK-QVDGYGVEIDPDNVAACVAR-----------GVSVIQGDLDEGLADFPDQSFDYV 79 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhc-CCeEEEEecCHHHHHHHHHc-----------CCCEEECCHHHhHhhCCCCCccEE
Confidence 456799999999999999888765 46899999999988888663 467999999999988889999999
Q ss_pred EEcC
Q 019187 205 IVDS 208 (345)
Q Consensus 205 i~D~ 208 (345)
|+.-
T Consensus 80 Ilsq 83 (193)
T PF07021_consen 80 ILSQ 83 (193)
T ss_pred ehHh
Confidence 9643
No 160
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.77 E-value=1.8e-08 Score=94.76 Aligned_cols=111 Identities=17% Similarity=0.186 Sum_probs=73.7
Q ss_pred CCceEEEEeccchH----HHHHHHhcCC-----CcEEEEEECCHHHHHHHHhcccc-cc-cCC------------C----
Q 019187 126 NPKKVLVIGGGDGG----VLREVSRHSS-----VEKIDICEIDKMVVDVSKQFFPD-VA-VGF------------E---- 178 (345)
Q Consensus 126 ~~~~VL~IG~G~G~----~~~~ll~~~~-----~~~V~~VEid~~vi~~ar~~~~~-~~-~~~------------~---- 178 (345)
.+.+|+++|||+|. ++..+++..+ ..+|+++|+|+.+++.|++..-. .. .+. +
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999996 4444544321 35899999999999999985310 00 000 0
Q ss_pred -----CCCEEEEEechHhHHhhCCCCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEe
Q 019187 179 -----DPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (345)
Q Consensus 179 -----~~rv~v~~~D~~~~l~~~~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~ 240 (345)
..+|++...|..+... +.++||+|++-..-..-..+ ....+++.++++|+|||.+++-
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~--~~~~fD~I~crnvl~yf~~~--~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESP--PLGDFDLIFCRNVLIYFDEP--TQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred EChHHhCcCEEeeccCCCCCC--ccCCCCEEEechhHHhCCHH--HHHHHHHHHHHHhCCCeEEEEE
Confidence 1368888888765321 25789999973221111111 1247999999999999999984
No 161
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.77 E-value=9.2e-08 Score=92.04 Aligned_cols=105 Identities=13% Similarity=0.106 Sum_probs=71.1
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhccccccc-CCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAV-GFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~-~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
++.+|||||||+|.++..+++. ..+|+++|+++.+++.|+++++.... .....++++...|.... +++||+|
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l-----~~~fD~V 216 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL-----SGKYDTV 216 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc-----CCCcCEE
Confidence 4579999999999999999987 35899999999999999998754210 01234678888885432 5789999
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEe
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~ 240 (345)
++-..-...+... ...+++.+.+ +.++|+++..
T Consensus 217 v~~~vL~H~p~~~--~~~ll~~l~~-l~~g~liIs~ 249 (315)
T PLN02585 217 TCLDVLIHYPQDK--ADGMIAHLAS-LAEKRLIISF 249 (315)
T ss_pred EEcCEEEecCHHH--HHHHHHHHHh-hcCCEEEEEe
Confidence 8632211111111 1245666664 5677776653
No 162
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.74 E-value=2.3e-07 Score=86.04 Aligned_cols=159 Identities=14% Similarity=0.229 Sum_probs=99.4
Q ss_pred eCCCceEEEEEEcCcce-EEEEcCeEeeeccchhHHHHHHH-hcccccCCCCceEEEEeccchHHHHHHHhcCCCcEEEE
Q 019187 78 KSDYQNVMVFQSSTYGK-VLILDGVIQLTERDECAYQEMIT-HLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDI 155 (345)
Q Consensus 78 ~s~yq~i~v~e~~~~g~-~L~lDg~~q~~~~de~~Y~e~l~-~l~l~~~~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~ 155 (345)
+-|+|+| +.+..||. .|..---+.+..+..-.+-++.. .+.-..|.++..+||+|||+|+++..+++.-+...|++
T Consensus 100 r~PlQYI--lg~~~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~A 177 (328)
T KOG2904|consen 100 RMPLQYI--LGSQPFGDLDLVCKPGVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTA 177 (328)
T ss_pred cCChhhe--eccCccCCceEEecCCeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEE
Confidence 5677776 33444544 23322233444443333333331 12222344566899999999999999998756789999
Q ss_pred EECCHHHHHHHHhcccccccCCCCCCEEEEEe----chHhHHhhCCCCCccEEEEcCCCCC-------CCcccc------
Q 019187 156 CEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIG----DGVAFLKAVPEGTYDAVIVDSSDPI-------GPAQEL------ 218 (345)
Q Consensus 156 VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~----D~~~~l~~~~~~~yDvIi~D~~~p~-------~~~~~l------ 218 (345)
||.++..+.+|.++.... .+ ..++.+++- |...-.+ ...+++|+|+++++--. .+.-..
T Consensus 178 iD~S~~Ai~La~eN~qr~--~l-~g~i~v~~~~me~d~~~~~~-l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lA 253 (328)
T KOG2904|consen 178 IDVSKAAIKLAKENAQRL--KL-SGRIEVIHNIMESDASDEHP-LLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLA 253 (328)
T ss_pred EeccHHHHHHHHHHHHHH--hh-cCceEEEecccccccccccc-cccCceeEEecCCCcccccchhhcCchheecCchhh
Confidence 999999999999987654 22 247777744 3322222 23589999998765211 000001
Q ss_pred ---------CcHHHHHHHHhccCCCcEEEEecc
Q 019187 219 ---------FEKPFFESVAKALRPGGVVSTQAE 242 (345)
Q Consensus 219 ---------~t~ef~~~v~r~LkpgGvlv~~~~ 242 (345)
.-..++....|.|+|||.+.+...
T Consensus 254 LdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 254 LDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred hccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 113577888999999999998764
No 163
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.73 E-value=2.9e-09 Score=96.17 Aligned_cols=102 Identities=20% Similarity=0.357 Sum_probs=77.6
Q ss_pred CceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEEE
Q 019187 127 PKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIV 206 (345)
Q Consensus 127 ~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi~ 206 (345)
-+++||||||+|.++-.+-.. ..++++||||+.|++.|.+.=- + =++.++|+..|++...+++||+|..
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~eKg~-----Y----D~L~~Aea~~Fl~~~~~er~DLi~A 194 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHEKGL-----Y----DTLYVAEAVLFLEDLTQERFDLIVA 194 (287)
T ss_pred cceeeecccCcCcccHhHHHH--HhhccCCchhHHHHHHHHhccc-----h----HHHHHHHHHHHhhhccCCcccchhh
Confidence 579999999999988887665 5789999999999999987411 1 1466788888998555799999994
Q ss_pred cCCCCCCCccccCcHHHHHHHHhccCCCcEEEEeccc
Q 019187 207 DSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAES 243 (345)
Q Consensus 207 D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s 243 (345)
.|-......| ..+|-.+...|+|||.|++.++.
T Consensus 195 --aDVl~YlG~L--e~~~~~aa~~L~~gGlfaFSvE~ 227 (287)
T COG4976 195 --ADVLPYLGAL--EGLFAGAAGLLAPGGLFAFSVET 227 (287)
T ss_pred --hhHHHhhcch--hhHHHHHHHhcCCCceEEEEecc
Confidence 3321111122 46888999999999999997754
No 164
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.70 E-value=1.2e-07 Score=93.25 Aligned_cols=101 Identities=14% Similarity=0.143 Sum_probs=85.5
Q ss_pred ceEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEEE
Q 019187 128 KKVLVIGGGDGGVLREVSRH-SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIV 206 (345)
Q Consensus 128 ~~VL~IG~G~G~~~~~ll~~-~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi~ 206 (345)
-+|||+.+|+|..+.++++. ++..+|+++|+++..++.+++++..+ +-.+++++++|+..++... ..+||+|++
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N----~~~~~~v~~~Da~~~l~~~-~~~fDvIdl 120 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYN----SVENIEVPNEDAANVLRYR-NRKFHVIDI 120 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHh----CCCcEEEEchhHHHHHHHh-CCCCCEEEe
Confidence 48999999999999999887 45789999999999999999998765 2236899999999998764 567999999
Q ss_pred cCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 207 DSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 207 D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
|++. . ..+|++.+.+.++++|++.+.+
T Consensus 121 DPfG---s-----~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 121 DPFG---T-----PAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred CCCC---C-----cHHHHHHHHHhcccCCEEEEEe
Confidence 9742 1 1379999999999999998874
No 165
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.66 E-value=7.7e-08 Score=88.77 Aligned_cols=99 Identities=20% Similarity=0.273 Sum_probs=74.3
Q ss_pred CCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
...++|||||||.|..+..+++..+..+++++|+ |.|++.+++ .+|++++.+|.+ ... .. +|+|
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~----------~~rv~~~~gd~f---~~~-P~-~D~~ 162 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE----------ADRVEFVPGDFF---DPL-PV-ADVY 162 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH----------TTTEEEEES-TT---TCC-SS-ESEE
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc----------ccccccccccHH---hhh-cc-ccce
Confidence 3567999999999999999988766779999999 999999988 259999999965 333 34 9999
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccCCC--cEEEEec
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALRPG--GVVSTQA 241 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~Lkpg--Gvlv~~~ 241 (345)
++--.-+..+... ....+++++++|+|| |.|++..
T Consensus 163 ~l~~vLh~~~d~~--~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 163 LLRHVLHDWSDED--CVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp EEESSGGGS-HHH--HHHHHHHHHHHSEECTTEEEEEEE
T ss_pred eeehhhhhcchHH--HHHHHHHHHHHhCCCCCCeEEEEe
Confidence 9744333222222 357899999999999 9988754
No 166
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.62 E-value=1.8e-07 Score=84.34 Aligned_cols=129 Identities=21% Similarity=0.345 Sum_probs=86.2
Q ss_pred CcceEEEEcC-eEeeeccchhHHHHHHHhcccccCCCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhc
Q 019187 91 TYGKVLILDG-VIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQF 169 (345)
Q Consensus 91 ~~g~~L~lDg-~~q~~~~de~~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~ 169 (345)
..|-.+.+|- .++++.+.... +..+... ..+...|||+.||-|.++..++++.....|.++|++|..++..+++
T Consensus 70 E~G~~f~~D~~kvyfs~rl~~E-r~Ri~~~----v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~N 144 (200)
T PF02475_consen 70 ENGIRFKVDLSKVYFSPRLSTE-RRRIANL----VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKEN 144 (200)
T ss_dssp ETTEEEEEETTTS---GGGHHH-HHHHHTC------TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHH
T ss_pred eCCEEEEEccceEEEccccHHH-HHHHHhc----CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHH
Confidence 3577777773 34444433222 2222221 2456899999999999999999976678999999999999999998
Q ss_pred ccccccCCCCCCEEEEEechHhHHhhCCCCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEE
Q 019187 170 FPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVS 238 (345)
Q Consensus 170 ~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv 238 (345)
...+ .++ .++.++.+|+++++. .+.+|-|+++.+.. +.+|+..+.+++++||++.
T Consensus 145 i~lN--kv~-~~i~~~~~D~~~~~~---~~~~drvim~lp~~--------~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 145 IRLN--KVE-NRIEVINGDAREFLP---EGKFDRVIMNLPES--------SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp HHHT--T-T-TTEEEEES-GGG------TT-EEEEEE--TSS--------GGGGHHHHHHHEEEEEEEE
T ss_pred HHHc--CCC-CeEEEEcCCHHHhcC---ccccCEEEECChHH--------HHHHHHHHHHHhcCCcEEE
Confidence 7765 333 579999999999986 57899999887542 3479999999999999874
No 167
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.60 E-value=3.9e-07 Score=86.17 Aligned_cols=114 Identities=23% Similarity=0.329 Sum_probs=79.3
Q ss_pred hhHHHHHHHhcccccCCCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHH---HHhcccccccCCCCCCEEEE
Q 019187 109 ECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDV---SKQFFPDVAVGFEDPRVTLH 185 (345)
Q Consensus 109 e~~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~---ar~~~~~~~~~~~~~rv~v~ 185 (345)
.+.|.....|++-+ ..++|||||||+|..+..+++. +.+.|+++|.++...-. ++++++. +.++..
T Consensus 101 d~KW~rl~p~l~~L---~gk~VLDIGC~nGY~~frM~~~-GA~~ViGiDP~~lf~~QF~~i~~~lg~------~~~~~~- 169 (315)
T PF08003_consen 101 DWKWDRLLPHLPDL---KGKRVLDIGCNNGYYSFRMLGR-GAKSVIGIDPSPLFYLQFEAIKHFLGQ------DPPVFE- 169 (315)
T ss_pred cchHHHHHhhhCCc---CCCEEEEecCCCcHHHHHHhhc-CCCEEEEECCChHHHHHHHHHHHHhCC------CccEEE-
Confidence 35677777787532 5689999999999999999988 46789999998765443 3444421 222332
Q ss_pred EechHhHHhhCCCCCccEEEEcCC--CCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 186 IGDGVAFLKAVPEGTYDAVIVDSS--DPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 186 ~~D~~~~l~~~~~~~yDvIi~D~~--~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
...+.+.+.. .+.||+|++-.- .-..| .+.++.+++.|++||.+++.+
T Consensus 170 lplgvE~Lp~--~~~FDtVF~MGVLYHrr~P------l~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 170 LPLGVEDLPN--LGAFDTVFSMGVLYHRRSP------LDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred cCcchhhccc--cCCcCEEEEeeehhccCCH------HHHHHHHHHhhCCCCEEEEEE
Confidence 2355566654 478999997321 11111 478899999999999999876
No 168
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.60 E-value=3.4e-07 Score=83.94 Aligned_cols=112 Identities=9% Similarity=-0.069 Sum_probs=78.1
Q ss_pred CCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhccccc---c-----cCCCCCCEEEEEechHhHHhh-
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDV---A-----VGFEDPRVTLHIGDGVAFLKA- 195 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~---~-----~~~~~~rv~v~~~D~~~~l~~- 195 (345)
+...+||+.|||.|.-+.+|+.+ .-+|++||+++..++.+.+..... . ..+...+++++++|.+++-..
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 34579999999999999999998 347999999999999876532110 0 012345899999998876321
Q ss_pred CCCCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEe
Q 019187 196 VPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (345)
Q Consensus 196 ~~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~ 240 (345)
...++||+|+--..-..-+ +.+ ...+.+.+.++|+|||.+++-
T Consensus 120 ~~~~~fD~VyDra~~~Alp-p~~-R~~Y~~~l~~lL~pgg~llll 162 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALP-NDL-RTNYAKMMLEVCSNNTQILLL 162 (226)
T ss_pred cccCCcCeeeeehhHhcCC-HHH-HHHHHHHHHHHhCCCcEEEEE
Confidence 1136899987432221112 111 468999999999999987664
No 169
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.3e-07 Score=84.49 Aligned_cols=118 Identities=18% Similarity=0.220 Sum_probs=87.7
Q ss_pred hHHHHHHHhcccccCCCCceEEEEeccchHHHHHHHhc--CCCcEEEEEECCHHHHHHHHhcccccc------cCCCCCC
Q 019187 110 CAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRH--SSVEKIDICEIDKMVVDVSKQFFPDVA------VGFEDPR 181 (345)
Q Consensus 110 ~~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~ll~~--~~~~~V~~VEid~~vi~~ar~~~~~~~------~~~~~~r 181 (345)
+.|.+.|..+--.+ ....+.|++|+|+|.++..+++. .+...+++||.-+++++.+++++...- ..++.++
T Consensus 67 ~mha~~le~L~~~L-~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~ 145 (237)
T KOG1661|consen 67 HMHATALEYLDDHL-QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGE 145 (237)
T ss_pred HHHHHHHHHHHHhh-ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCc
Confidence 45555554432111 24569999999999999888765 233344899999999999999876652 2366789
Q ss_pred EEEEEechHhHHhhCCCCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEe
Q 019187 182 VTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (345)
Q Consensus 182 v~v~~~D~~~~l~~~~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~ 240 (345)
+.++++|++.--.+ ..+||.|.+.+..+ +.-+.+...|++||.+++-
T Consensus 146 l~ivvGDgr~g~~e--~a~YDaIhvGAaa~----------~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 146 LSIVVGDGRKGYAE--QAPYDAIHVGAAAS----------ELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred eEEEeCCccccCCc--cCCcceEEEccCcc----------ccHHHHHHhhccCCeEEEe
Confidence 99999999886553 68899999986654 3457778889999999884
No 170
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.58 E-value=6.1e-07 Score=85.61 Aligned_cols=101 Identities=22% Similarity=0.253 Sum_probs=72.4
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
...+|||||||.|.+++.+++. ..+|+++|+|+.+++.+++.+... + ..++++++.+|+.++- ...||+|+
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~--~-~~~~v~ii~~Dal~~~----~~~~d~Vv 106 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNS--P-LASKLEVIEGDALKTE----FPYFDVCV 106 (294)
T ss_pred CcCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhc--C-CCCcEEEEECCHhhhc----ccccCEEE
Confidence 4578999999999999999887 358999999999999999887542 1 1368999999987642 34689999
Q ss_pred EcCCCCCCCccccCcHHHHHHHHh-ccCCCcEEEEec
Q 019187 206 VDSSDPIGPAQELFEKPFFESVAK-ALRPGGVVSTQA 241 (345)
Q Consensus 206 ~D~~~p~~~~~~l~t~ef~~~v~r-~LkpgGvlv~~~ 241 (345)
.+++-.+. +...++.+.. ..-...++++|-
T Consensus 107 aNlPY~Is------tpil~~ll~~~~~~~~~vlm~Qk 137 (294)
T PTZ00338 107 ANVPYQIS------SPLVFKLLAHRPLFRCAVLMFQK 137 (294)
T ss_pred ecCCcccC------cHHHHHHHhcCCCCceeeeeehH
Confidence 77654332 2344444432 122345666653
No 171
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.55 E-value=6.2e-07 Score=83.93 Aligned_cols=73 Identities=19% Similarity=0.277 Sum_probs=60.7
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
+.++|||||||.|.++..+++. ..+|+++|+|+.+++.+++.+.. .++++++++|+.++- -..||.|+
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~------~~~v~ii~~D~~~~~----~~~~d~Vv 96 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIA------AGNVEIIEGDALKVD----LPEFNKVV 96 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhcc------CCCEEEEEeccccCC----chhceEEE
Confidence 4579999999999999999988 35899999999999999988753 358999999987642 24589999
Q ss_pred EcCCC
Q 019187 206 VDSSD 210 (345)
Q Consensus 206 ~D~~~ 210 (345)
++.+.
T Consensus 97 ~NlPy 101 (258)
T PRK14896 97 SNLPY 101 (258)
T ss_pred EcCCc
Confidence 87654
No 172
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.54 E-value=3.3e-07 Score=81.87 Aligned_cols=92 Identities=23% Similarity=0.219 Sum_probs=66.0
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
...+|||||||+|.++..+++.. ..+++++|+++++++.+++. +++++.+|+.+.+...++++||+|+
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~~-----------~~~~~~~d~~~~l~~~~~~sfD~Vi 80 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVAR-----------GVNVIQGDLDEGLEAFPDKSFDYVI 80 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHHc-----------CCeEEEEEhhhcccccCCCCcCEEE
Confidence 45699999999999999887764 34789999999999988641 3678888876644323367899999
Q ss_pred EcCCCCCCCccccCcHHHHHHHHhccCC
Q 019187 206 VDSSDPIGPAQELFEKPFFESVAKALRP 233 (345)
Q Consensus 206 ~D~~~p~~~~~~l~t~ef~~~v~r~Lkp 233 (345)
+...-..... ...+++++.+.+++
T Consensus 81 ~~~~l~~~~d----~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 81 LSQTLQATRN----PEEILDEMLRVGRH 104 (194)
T ss_pred EhhHhHcCcC----HHHHHHHHHHhCCe
Confidence 8643221111 24677878777664
No 173
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.50 E-value=4e-07 Score=83.22 Aligned_cols=108 Identities=18% Similarity=0.220 Sum_probs=75.4
Q ss_pred CCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHh-cccccc-------cCCCCCCEEEEEechHhHHhhC
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQ-FFPDVA-------VGFEDPRVTLHIGDGVAFLKAV 196 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~-~~~~~~-------~~~~~~rv~v~~~D~~~~l~~~ 196 (345)
+.+.+||+.|||.|.-+..++++ .-+|++||+++..++.+.+ +..... ......+++++++|.+++-...
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~ 113 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED 113 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred CCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence 34569999999999999999998 3589999999999999843 221110 0124568999999988864432
Q ss_pred CCCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEE
Q 019187 197 PEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVV 237 (345)
Q Consensus 197 ~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvl 237 (345)
.++||+|+=-.+-..-+ +. ....+.+.++++|+|||.+
T Consensus 114 -~g~fD~iyDr~~l~Alp-p~-~R~~Ya~~l~~ll~p~g~~ 151 (218)
T PF05724_consen 114 -VGKFDLIYDRTFLCALP-PE-MRERYAQQLASLLKPGGRG 151 (218)
T ss_dssp -HHSEEEEEECSSTTTS--GG-GHHHHHHHHHHCEEEEEEE
T ss_pred -cCCceEEEEecccccCC-HH-HHHHHHHHHHHHhCCCCcE
Confidence 36899998332221112 22 2468999999999999993
No 174
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.49 E-value=1.2e-06 Score=75.77 Aligned_cols=107 Identities=21% Similarity=0.222 Sum_probs=82.7
Q ss_pred CCceEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHh---HHhhCCCCCc
Q 019187 126 NPKKVLVIGGGDGGVLREVSRH-SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVA---FLKAVPEGTY 201 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~-~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~---~l~~~~~~~y 201 (345)
...-||++|.|+|.+++.++++ -..+.++++|.+++.+....+.++ .++++.+|+.. .+.+.....|
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p---------~~~ii~gda~~l~~~l~e~~gq~~ 118 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP---------GVNIINGDAFDLRTTLGEHKGQFF 118 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC---------CccccccchhhHHHHHhhcCCCee
Confidence 4568999999999999999987 235689999999999999988775 35689999865 3444446779
Q ss_pred cEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEeccc
Q 019187 202 DAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAES 243 (345)
Q Consensus 202 DvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s 243 (345)
|.||+..+--.-+.. -+.+.++.+...|..||.+++-..+
T Consensus 119 D~viS~lPll~~P~~--~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 119 DSVISGLPLLNFPMH--RRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred eeEEeccccccCcHH--HHHHHHHHHHHhcCCCCeEEEEEec
Confidence 999987654322211 2468899999999999999875533
No 175
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.47 E-value=6.3e-07 Score=78.96 Aligned_cols=110 Identities=19% Similarity=0.274 Sum_probs=66.8
Q ss_pred CCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHH--hhCCCCCcc
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFL--KAVPEGTYD 202 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l--~~~~~~~yD 202 (345)
.++++||+||||+|..+..+++..+..+|++.|.++ +++.++.+...+.. ....++.+..-|--+.+ ......+||
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~-~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGS-LLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT---------EEEE--TTS-HHHHHHS-SSBS
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccc-cccccccCcEEEecCcccccccccccCC
Confidence 357899999999999999998885567999999999 99999998765421 23456777766532211 111246899
Q ss_pred EEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEe
Q 019187 203 AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (345)
Q Consensus 203 vIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~ 240 (345)
+|+. +|-.... . .-..+++.+.+.|+++|.+++.
T Consensus 122 ~Ila--sDv~Y~~-~-~~~~L~~tl~~ll~~~~~vl~~ 155 (173)
T PF10294_consen 122 VILA--SDVLYDE-E-LFEPLVRTLKRLLKPNGKVLLA 155 (173)
T ss_dssp EEEE--ES--S-G-G-GHHHHHHHHHHHBTT-TTEEEE
T ss_pred EEEE--ecccchH-H-HHHHHHHHHHHHhCCCCEEEEE
Confidence 9994 3322222 1 1367899999999999986553
No 176
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.47 E-value=2.1e-06 Score=82.67 Aligned_cols=84 Identities=18% Similarity=0.268 Sum_probs=60.3
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEE-echHhHHhhC--CCCCcc
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHI-GDGVAFLKAV--PEGTYD 202 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~-~D~~~~l~~~--~~~~yD 202 (345)
...+|||||||+|++...++......+++++|||+..++.|++++..+. ++. .+++++. .|....+... +.++||
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np-~l~-~~I~~~~~~~~~~i~~~i~~~~~~fD 191 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANP-GLN-GAIRLRLQKDSKAIFKGIIHKNERFD 191 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcc-CCc-CcEEEEEccchhhhhhcccccCCceE
Confidence 4579999999999887777654335689999999999999999886530 122 3787764 4444333321 257899
Q ss_pred EEEEcCCCC
Q 019187 203 AVIVDSSDP 211 (345)
Q Consensus 203 vIi~D~~~p 211 (345)
+|+++++..
T Consensus 192 livcNPPf~ 200 (321)
T PRK11727 192 ATLCNPPFH 200 (321)
T ss_pred EEEeCCCCc
Confidence 999987653
No 177
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.46 E-value=4.6e-07 Score=91.16 Aligned_cols=108 Identities=18% Similarity=0.236 Sum_probs=74.3
Q ss_pred CceEEEEeccchHHHHHHHhc----CCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCcc
Q 019187 127 PKKVLVIGGGDGGVLREVSRH----SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYD 202 (345)
Q Consensus 127 ~~~VL~IG~G~G~~~~~ll~~----~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yD 202 (345)
.+.|||||+|+|-+...+++. ....+|.+||.++..+...++..... +++ .+|+++.+|.+++-. .++.|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n--~w~-~~V~vi~~d~r~v~l---pekvD 260 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNAN--GWG-DKVTVIHGDMREVEL---PEKVD 260 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHT--TTT-TTEEEEES-TTTSCH---SS-EE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhc--CCC-CeEEEEeCcccCCCC---CCcee
Confidence 467999999999998776654 24579999999998777665542221 333 489999999988733 56999
Q ss_pred EEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEecc
Q 019187 203 AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAE 242 (345)
Q Consensus 203 vIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~ 242 (345)
+||...-...+..+ ...+.+....|.|||||+++=+..
T Consensus 261 IIVSElLGsfg~nE--l~pE~Lda~~rfLkp~Gi~IP~~~ 298 (448)
T PF05185_consen 261 IIVSELLGSFGDNE--LSPECLDAADRFLKPDGIMIPSSY 298 (448)
T ss_dssp EEEE---BTTBTTT--SHHHHHHHGGGGEEEEEEEESSEE
T ss_pred EEEEeccCCccccc--cCHHHHHHHHhhcCCCCEEeCcch
Confidence 99986654333222 246788888999999999875543
No 178
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.46 E-value=1.3e-06 Score=82.37 Aligned_cols=73 Identities=22% Similarity=0.289 Sum_probs=58.6
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
...+|||||||+|.++..++++. .+|+++|+|+.+++.+++.+. +++++++.+|+.++-.. +-.+|.|+
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~-------~~~v~~i~~D~~~~~~~--~~~~~~vv 110 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFA-------EDNLTIIEGDALKVDLS--ELQPLKVV 110 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhc-------cCceEEEEChhhcCCHH--HcCcceEE
Confidence 55799999999999999999984 389999999999999998663 25899999998775211 11158899
Q ss_pred EcCC
Q 019187 206 VDSS 209 (345)
Q Consensus 206 ~D~~ 209 (345)
.+++
T Consensus 111 ~NlP 114 (272)
T PRK00274 111 ANLP 114 (272)
T ss_pred EeCC
Confidence 7764
No 179
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.45 E-value=4.9e-07 Score=81.48 Aligned_cols=125 Identities=21% Similarity=0.154 Sum_probs=81.5
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
.+.=|||||||+|..+..+... + -..++|||++.|++.|.+ .+. + -.++.+|.-+-+.- ..++||.+|
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~-G-h~wiGvDiSpsML~~a~~--~e~----e---gdlil~DMG~Glpf-rpGtFDg~I 117 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDS-G-HQWIGVDISPSMLEQAVE--REL----E---GDLILCDMGEGLPF-RPGTFDGVI 117 (270)
T ss_pred CCcEEEEeccCCCcchheeccC-C-ceEEeecCCHHHHHHHHH--hhh----h---cCeeeeecCCCCCC-CCCccceEE
Confidence 3678999999999887776654 2 578999999999999987 322 1 23666676555543 379999988
Q ss_pred EcCCCCC-------CCccccCcHHHHHHHHhccCCCcEEEEeccchhhhhhHHHHHH-HHHHhhcCC
Q 019187 206 VDSSDPI-------GPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIV-ANCRQIFKG 264 (345)
Q Consensus 206 ~D~~~p~-------~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s~~~~~~~~~~i~-~~l~~~F~~ 264 (345)
+-+.-.| ...+..--..||..++.+|++|+..|+|... -+.+.+..+. +.+++-|.+
T Consensus 118 SISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYp--en~~q~d~i~~~a~~aGF~G 182 (270)
T KOG1541|consen 118 SISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYP--ENEAQIDMIMQQAMKAGFGG 182 (270)
T ss_pred EeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecc--cchHHHHHHHHHHHhhccCC
Confidence 6332111 1111111256999999999999999998521 1122333333 335555643
No 180
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.44 E-value=4.6e-06 Score=84.38 Aligned_cols=114 Identities=23% Similarity=0.297 Sum_probs=86.7
Q ss_pred CCCceEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccE
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHS-SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~-~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDv 203 (345)
....+|||+++|.|+=+.+++..- +...|+++|+++.-++..++++... .-.++.+...|+..+.... .+.||.
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~----G~~nv~v~~~D~~~~~~~~-~~~fD~ 186 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRC----GVSNVALTHFDGRVFGAAL-PETFDA 186 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHc----CCCeEEEEeCchhhhhhhc-hhhcCe
Confidence 345799999999999999988763 3458999999999999999988765 3356899999998765443 567999
Q ss_pred EEEcCCCCC-CC----ccc-------------cCcHHHHHHHHhccCCCcEEEEeccc
Q 019187 204 VIVDSSDPI-GP----AQE-------------LFEKPFFESVAKALRPGGVVSTQAES 243 (345)
Q Consensus 204 Ii~D~~~p~-~~----~~~-------------l~t~ef~~~v~r~LkpgGvlv~~~~s 243 (345)
|++|++... +. +.. -...+++..+.+.|||||+||-.+++
T Consensus 187 ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 187 ILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred EEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 999998642 11 000 01257888899999999999766554
No 181
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.43 E-value=3.5e-06 Score=84.34 Aligned_cols=115 Identities=23% Similarity=0.286 Sum_probs=87.8
Q ss_pred HHHHHHHhcccccCCCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechH
Q 019187 111 AYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGV 190 (345)
Q Consensus 111 ~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~ 190 (345)
.|..++.++.. ....+|||+=||.|.++..+++. ..+|++||++++.++.|+++...+ .-.+++++.+|+.
T Consensus 281 l~~~a~~~~~~---~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n----~i~N~~f~~~~ae 351 (432)
T COG2265 281 LYETALEWLEL---AGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAAN----GIDNVEFIAGDAE 351 (432)
T ss_pred HHHHHHHHHhh---cCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHc----CCCcEEEEeCCHH
Confidence 34444444332 24568999999999999999977 689999999999999999998765 3345999999999
Q ss_pred hHHhhC-CCCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 191 AFLKAV-PEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 191 ~~l~~~-~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
++.... ....+|+|++|++.... ..++.+.+.+ ++|..++.+.+
T Consensus 352 ~~~~~~~~~~~~d~VvvDPPR~G~------~~~~lk~l~~-~~p~~IvYVSC 396 (432)
T COG2265 352 EFTPAWWEGYKPDVVVVDPPRAGA------DREVLKQLAK-LKPKRIVYVSC 396 (432)
T ss_pred HHhhhccccCCCCEEEECCCCCCC------CHHHHHHHHh-cCCCcEEEEeC
Confidence 998764 13578999999875432 2466666664 77878888765
No 182
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.41 E-value=2.2e-06 Score=79.85 Aligned_cols=72 Identities=19% Similarity=0.317 Sum_probs=58.6
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCcc---
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYD--- 202 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yD--- 202 (345)
+..+|||||||+|.+++.+++.. .+|+++|+|+.+++.+++.+.. .++++++.+|+.++-. ..||
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~~------~~~v~v~~~D~~~~~~----~~~d~~~ 96 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLLSL------YERLEVIEGDALKVDL----PDFPKQL 96 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhCc------CCcEEEEECchhcCCh----hHcCCcc
Confidence 56799999999999999999885 4699999999999999987642 4689999999876532 2456
Q ss_pred EEEEcCC
Q 019187 203 AVIVDSS 209 (345)
Q Consensus 203 vIi~D~~ 209 (345)
+|+.+.+
T Consensus 97 ~vvsNlP 103 (253)
T TIGR00755 97 KVVSNLP 103 (253)
T ss_pred eEEEcCC
Confidence 8887765
No 183
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.38 E-value=8.2e-07 Score=77.36 Aligned_cols=80 Identities=23% Similarity=0.323 Sum_probs=57.5
Q ss_pred ceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCC-ccEEEE
Q 019187 128 KKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGT-YDAVIV 206 (345)
Q Consensus 128 ~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~-yDvIi~ 206 (345)
+.|+|+.||.|+.+..+++. ..+|++||+|+.-++.|+.+.... +. ..+++++++|..+.++...... ||+|++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~--~~~Viaidid~~~~~~a~hNa~vY--Gv-~~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFART--FDRVIAIDIDPERLECAKHNAEVY--GV-ADNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHT--T-EEEEEES-HHHHHHHHHHHHHT--T--GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred CEEEEeccCcCHHHHHHHHh--CCeEEEEECCHHHHHHHHHHHHHc--CC-CCcEEEEeCCHHHHHhhccccccccEEEE
Confidence 36899999999999999999 468999999999999999987654 11 4589999999999887653233 899996
Q ss_pred cCCCCCCC
Q 019187 207 DSSDPIGP 214 (345)
Q Consensus 207 D~~~p~~~ 214 (345)
++ ||+.
T Consensus 76 SP--PWGG 81 (163)
T PF09445_consen 76 SP--PWGG 81 (163)
T ss_dssp -----BSS
T ss_pred CC--CCCC
Confidence 54 5653
No 184
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=2.6e-06 Score=79.39 Aligned_cols=97 Identities=22% Similarity=0.265 Sum_probs=71.4
Q ss_pred CceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCC--CccEE
Q 019187 127 PKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEG--TYDAV 204 (345)
Q Consensus 127 ~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~--~yDvI 204 (345)
...||+||+|.|.++..+++. ..+|++||||+.+++..++.+.. .++++++.+|+..+-. .. .++.|
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~~------~~n~~vi~~DaLk~d~---~~l~~~~~v 99 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERFAP------YDNLTVINGDALKFDF---PSLAQPYKV 99 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhh--cCeEEEEEeCHHHHHHHHHhccc------ccceEEEeCchhcCcc---hhhcCCCEE
Confidence 579999999999999999999 46799999999999999998752 3689999999877622 22 68999
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccCC-CcEEEEe
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALRP-GGVVSTQ 240 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~Lkp-gGvlv~~ 240 (345)
+.+.+-.+.. .=.++.+.....+ ..++++|
T Consensus 100 VaNlPY~Iss------pii~kll~~~~~~~~~v~M~Q 130 (259)
T COG0030 100 VANLPYNISS------PILFKLLEEKFIIQDMVLMVQ 130 (259)
T ss_pred EEcCCCcccH------HHHHHHHhccCccceEEEEeH
Confidence 9877654332 2233333333333 5566654
No 185
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=5.2e-06 Score=72.84 Aligned_cols=123 Identities=16% Similarity=0.169 Sum_probs=88.5
Q ss_pred CCceEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRH-SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~-~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
+++-+|+||||+|.+...+.+. .+..-..+.||+|..++..++-... +.-++++++.|...-++ .++.|++
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~-----n~~~~~~V~tdl~~~l~---~~~VDvL 114 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARC-----NRVHIDVVRTDLLSGLR---NESVDVL 114 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHh-----cCCccceeehhHHhhhc---cCCccEE
Confidence 4788999999999999988775 3455678999999999988776554 34568899999888776 4889999
Q ss_pred EEcCCCCCCC-----------------ccccCcHHHHHHHHhccCCCcEEEEeccchhhhhhHHHHHHHHHHh
Q 019187 205 IVDSSDPIGP-----------------AQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQ 260 (345)
Q Consensus 205 i~D~~~p~~~-----------------~~~l~t~ef~~~v~r~LkpgGvlv~~~~s~~~~~~~~~~i~~~l~~ 260 (345)
+.+.+--..+ ...-.+..++..+-.+|.|.|++.+.. ......+++++.++.
T Consensus 115 vfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~----~~~N~p~ei~k~l~~ 183 (209)
T KOG3191|consen 115 VFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVA----LRANKPKEILKILEK 183 (209)
T ss_pred EECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeee----hhhcCHHHHHHHHhh
Confidence 9876531110 011124567888889999999998754 233344566665553
No 186
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.34 E-value=4.4e-06 Score=77.44 Aligned_cols=94 Identities=16% Similarity=0.207 Sum_probs=67.8
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
+..++||||.|+|.++..++.+ .++|.+.|+++.|....++. ..+++.. .+|-. . +.+||+|.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~--f~~v~aTE~S~~Mr~rL~~k-----------g~~vl~~--~~w~~-~-~~~fDvIs 156 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL--FKEVYATEASPPMRWRLSKK-----------GFTVLDI--DDWQQ-T-DFKFDVIS 156 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh--cceEEeecCCHHHHHHHHhC-----------CCeEEeh--hhhhc-c-CCceEEEe
Confidence 4578999999999999999887 46899999999997766552 2334433 33432 2 57899999
Q ss_pred E-cCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 206 V-DSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 206 ~-D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
| +.-|.... -...++.+++.|+|+|++++-.
T Consensus 157 cLNvLDRc~~-----P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 157 CLNVLDRCDR-----PLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred ehhhhhccCC-----HHHHHHHHHHHhCCCCEEEEEE
Confidence 7 33222111 1468999999999999987744
No 187
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.34 E-value=4.8e-05 Score=73.67 Aligned_cols=175 Identities=17% Similarity=0.164 Sum_probs=115.5
Q ss_pred cceEEEEc-CeEeeeccchhHHHHHHHhcccccCCCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcc
Q 019187 92 YGKVLILD-GVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFF 170 (345)
Q Consensus 92 ~g~~L~lD-g~~q~~~~de~~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~ 170 (345)
.|..+.+| -.++++.+....-..+... ......|||+-+|-|.++..++++... +|.++||+|..++..++++
T Consensus 158 ~G~~f~vD~~Kv~Fsprl~~ER~Rva~~-----v~~GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi 231 (341)
T COG2520 158 NGCRFKVDVAKVYFSPRLSTERARVAEL-----VKEGETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENI 231 (341)
T ss_pred CCEEEEEchHHeEECCCchHHHHHHHhh-----hcCCCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHH
Confidence 45555566 2355555442222222221 234789999999999999999998543 4999999999999999998
Q ss_pred cccccCCCCCCEEEEEechHhHHhhCCCCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEeccchhhhh--
Q 019187 171 PDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHM-- 248 (345)
Q Consensus 171 ~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s~~~~~-- 248 (345)
..+ ... .++..+++|++++.... +.+|-|++..+.. +.+|+....+++++||++-.....+-...
T Consensus 232 ~LN--~v~-~~v~~i~gD~rev~~~~--~~aDrIim~~p~~--------a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~ 298 (341)
T COG2520 232 RLN--KVE-GRVEPILGDAREVAPEL--GVADRIIMGLPKS--------AHEFLPLALELLKDGGIIHYYEFVPEDDIEE 298 (341)
T ss_pred Hhc--Ccc-ceeeEEeccHHHhhhcc--ccCCEEEeCCCCc--------chhhHHHHHHHhhcCcEEEEEeccchhhccc
Confidence 775 222 35999999999998743 7899999876541 45899999999999999877653332211
Q ss_pred hHHHHHHHHHHhhcCCcceEEEEEEeecCCCcEEEEE
Q 019187 249 HIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFML 285 (345)
Q Consensus 249 ~~~~~i~~~l~~~F~~~v~~~~~~vP~y~~g~w~~~~ 285 (345)
..+..+.....+.=.......+..+-+|..+.|-+.+
T Consensus 299 ~~~~~i~~~~~~~~~~~~v~~~r~VksysP~v~hv~v 335 (341)
T COG2520 299 RPEKRIKSAARKGGYKVEVLKVRRVKSYSPGVYHVVV 335 (341)
T ss_pred chHHHHHHHHhhccCcceEEEEEEecccCCCeeEEEE
Confidence 0122222222222001123345678888888775443
No 188
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.32 E-value=4.9e-06 Score=74.85 Aligned_cols=119 Identities=19% Similarity=0.221 Sum_probs=91.0
Q ss_pred hhHHHHHHHhcccccCCCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEec
Q 019187 109 ECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGD 188 (345)
Q Consensus 109 e~~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D 188 (345)
|-.|.++++.... .+..|||.||.|-|.+...+-+.++. +-+.+|-.|.|.+..|++-+. +..+|.++.+-
T Consensus 87 EtpiMha~A~ai~---tkggrvLnVGFGMgIidT~iQe~~p~-~H~IiE~hp~V~krmr~~gw~-----ek~nViil~g~ 157 (271)
T KOG1709|consen 87 ETPIMHALAEAIS---TKGGRVLNVGFGMGIIDTFIQEAPPD-EHWIIEAHPDVLKRMRDWGWR-----EKENVIILEGR 157 (271)
T ss_pred hhHHHHHHHHHHh---hCCceEEEeccchHHHHHHHhhcCCc-ceEEEecCHHHHHHHHhcccc-----cccceEEEecc
Confidence 3445554443222 47789999999999999998888765 557899999999999987543 44578777776
Q ss_pred hHhHHhhCCCCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEe
Q 019187 189 GVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (345)
Q Consensus 189 ~~~~l~~~~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~ 240 (345)
-.+.+.+.+++.||-|+-|.+.+... . +.+|++.+.++|||+|++..-
T Consensus 158 WeDvl~~L~d~~FDGI~yDTy~e~yE--d--l~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 158 WEDVLNTLPDKHFDGIYYDTYSELYE--D--LRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred hHhhhccccccCcceeEeechhhHHH--H--HHHHHHHHhhhcCCCceEEEe
Confidence 66777777788899999998865322 1 468999999999999999763
No 189
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.29 E-value=1.3e-06 Score=84.77 Aligned_cols=115 Identities=17% Similarity=0.248 Sum_probs=73.2
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCC------CCCEEEEEechHhH-Hhh-CC
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFE------DPRVTLHIGDGVAF-LKA-VP 197 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~------~~rv~v~~~D~~~~-l~~-~~ 197 (345)
...+|||||||-|+-+.-..+. .+..++++||+.+.++.|++.......... +-...++.+|...- +.. ..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~-~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA-KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 5679999999988866666665 478999999999999999987732211100 12456788887532 221 12
Q ss_pred C--CCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 198 E--GTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 198 ~--~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
. .+||+|-|=..-+..-...--.+.+++.+.+.|+|||+|+...
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~ 186 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTT 186 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 2 5899999754433322111123569999999999999999754
No 190
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.25 E-value=7.1e-06 Score=79.08 Aligned_cols=121 Identities=21% Similarity=0.196 Sum_probs=88.5
Q ss_pred hHHHHHHHhcccccCCCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEe-c
Q 019187 110 CAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIG-D 188 (345)
Q Consensus 110 ~~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~-D 188 (345)
..+...|+.++.. .....|||==||||+++.++.-. ..++.++|||..|++-|+.++... .-+...++.. |
T Consensus 183 P~lAR~mVNLa~v--~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y----~i~~~~~~~~~D 254 (347)
T COG1041 183 PRLARAMVNLARV--KRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYY----GIEDYPVLKVLD 254 (347)
T ss_pred HHHHHHHHHHhcc--ccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhh----CcCceeEEEecc
Confidence 3445666665433 34569999999999999998766 468999999999999999999865 2234555555 8
Q ss_pred hHhHHhhCCCCCccEEEEcCCCCCCC------ccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 189 GVAFLKAVPEGTYDAVIVDSSDPIGP------AQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 189 ~~~~l~~~~~~~yDvIi~D~~~p~~~------~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
+... + .++.++|.|++|++-.... ...| ..++++.+.++|++||.+++.+
T Consensus 255 a~~l-p-l~~~~vdaIatDPPYGrst~~~~~~l~~L-y~~~le~~~evLk~gG~~vf~~ 310 (347)
T COG1041 255 ATNL-P-LRDNSVDAIATDPPYGRSTKIKGEGLDEL-YEEALESASEVLKPGGRIVFAA 310 (347)
T ss_pred cccC-C-CCCCccceEEecCCCCcccccccccHHHH-HHHHHHHHHHHhhcCcEEEEec
Confidence 6654 2 3355799999998653321 1233 3578999999999999999865
No 191
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.17 E-value=8.3e-06 Score=83.88 Aligned_cols=129 Identities=16% Similarity=0.205 Sum_probs=82.2
Q ss_pred CCceEEEEeccchHHHHHHHhcCC--------CcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHh---
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSS--------VEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLK--- 194 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~--------~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~--- 194 (345)
...+|||.|||+|+++..++++.. ...++++|||+..++.|+..+... .....++.++|......
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~----~~~~~~i~~~d~l~~~~~~~ 106 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEF----ALLEINVINFNSLSYVLLNI 106 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhc----CCCCceeeeccccccccccc
Confidence 456999999999999998876421 257899999999999999887644 22245666666443211
Q ss_pred hCCCCCccEEEEcCCCCCCCc-c------------------------------------------ccCcHHHHHHHHhcc
Q 019187 195 AVPEGTYDAVIVDSSDPIGPA-Q------------------------------------------ELFEKPFFESVAKAL 231 (345)
Q Consensus 195 ~~~~~~yDvIi~D~~~p~~~~-~------------------------------------------~l~t~ef~~~v~r~L 231 (345)
....++||+||.+++--.... . .+|..=|++.+.+.|
T Consensus 107 ~~~~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL 186 (524)
T TIGR02987 107 ESYLDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIA 186 (524)
T ss_pred ccccCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhc
Confidence 111368999998765321110 0 011112346789999
Q ss_pred CCCcEEEEeccchhhhhhHHHHHHHHH
Q 019187 232 RPGGVVSTQAESIWLHMHIIEDIVANC 258 (345)
Q Consensus 232 kpgGvlv~~~~s~~~~~~~~~~i~~~l 258 (345)
++||.+.+-..+.+......+.+.+.+
T Consensus 187 ~~~G~~~~I~P~s~l~~~~~~~lR~~l 213 (524)
T TIGR02987 187 NKNGYVSIISPASWLGDKTGENLREYI 213 (524)
T ss_pred CCCCEEEEEEChHHhcCccHHHHHHHH
Confidence 999998876655555544443343333
No 192
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.16 E-value=7.2e-06 Score=72.67 Aligned_cols=110 Identities=21% Similarity=0.279 Sum_probs=74.4
Q ss_pred CCCceEEEEeccchHHHHHHHhcC-CCc--------EEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhh
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHS-SVE--------KIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKA 195 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~-~~~--------~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~ 195 (345)
.....|||--||+|+++.|.+... ... ++.++|+|+++++.|++++... +. ...+.+...|+.++-.
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~a--g~-~~~i~~~~~D~~~l~~- 102 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAA--GV-EDYIDFIQWDARELPL- 102 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHT--T--CGGEEEEE--GGGGGG-
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhc--cc-CCceEEEecchhhccc-
Confidence 345689999999999999976642 222 3889999999999999998754 33 2468999999887752
Q ss_pred CCCCCccEEEEcCCCCCCCc-----cccCcHHHHHHHHhccCCCcEEEEe
Q 019187 196 VPEGTYDAVIVDSSDPIGPA-----QELFEKPFFESVAKALRPGGVVSTQ 240 (345)
Q Consensus 196 ~~~~~yDvIi~D~~~p~~~~-----~~l~t~ef~~~v~r~LkpgGvlv~~ 240 (345)
..+.+|+||+|++-..... ..| -..|++.+.++|++..++++.
T Consensus 103 -~~~~~d~IvtnPPyG~r~~~~~~~~~l-y~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 103 -PDGSVDAIVTNPPYGRRLGSKKDLEKL-YRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp -TTSBSCEEEEE--STTSHCHHHHHHHH-HHHHHHHHHCHSTTCEEEEEE
T ss_pred -ccCCCCEEEECcchhhhccCHHHHHHH-HHHHHHHHHHHCCCCEEEEEE
Confidence 2678999999986533211 223 246788889999996666654
No 193
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.15 E-value=1.3e-05 Score=70.57 Aligned_cols=132 Identities=15% Similarity=0.252 Sum_probs=74.5
Q ss_pred HHHHHHhcccccCCCCceEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEech-
Q 019187 112 YQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHS-SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDG- 189 (345)
Q Consensus 112 Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~ll~~~-~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~- 189 (345)
-.|++....+....++.+||||||+.|+.+..++++. ...+|++||+.+. .-+ +.+..+.+|.
T Consensus 9 L~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~------~~~---------~~~~~i~~d~~ 73 (181)
T PF01728_consen 9 LYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM------DPL---------QNVSFIQGDIT 73 (181)
T ss_dssp HHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST------GS----------TTEEBTTGGGE
T ss_pred HHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc------ccc---------cceeeeecccc
Confidence 3566655554433356899999999999999999885 4579999999876 101 1233333332
Q ss_pred ----HhHHhhC---CCCCccEEEEcCCCCCCCcccc-------CcHHHHHHHHhccCCCcEEEEeccchhhhhhHHHHHH
Q 019187 190 ----VAFLKAV---PEGTYDAVIVDSSDPIGPAQEL-------FEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIV 255 (345)
Q Consensus 190 ----~~~l~~~---~~~~yDvIi~D~~~p~~~~~~l-------~t~ef~~~v~r~LkpgGvlv~~~~s~~~~~~~~~~i~ 255 (345)
.+.+.+. ..+++|+|++|........... .....+..+.+.|++||.+++..-. ..+. ..++
T Consensus 74 ~~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~---~~~~-~~~~ 149 (181)
T PF01728_consen 74 NPENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK---GPEI-EELI 149 (181)
T ss_dssp EEEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS---STTS-HHHH
T ss_pred hhhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc---CccH-HHHH
Confidence 2223222 1368999999985433221100 0123344556789999988875321 2222 3666
Q ss_pred HHHHhhc
Q 019187 256 ANCRQIF 262 (345)
Q Consensus 256 ~~l~~~F 262 (345)
..++..|
T Consensus 150 ~~l~~~F 156 (181)
T PF01728_consen 150 YLLKRCF 156 (181)
T ss_dssp HHHHHHH
T ss_pred HHHHhCC
Confidence 7777777
No 194
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.14 E-value=3.4e-06 Score=76.53 Aligned_cols=98 Identities=23% Similarity=0.316 Sum_probs=77.4
Q ss_pred CceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCC--EEEEEechHhHHhhCCCCCccEE
Q 019187 127 PKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPR--VTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 127 ~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~r--v~v~~~D~~~~l~~~~~~~yDvI 204 (345)
-..+++||||-|.+.+++.... +++++.+|-+..|++.|+.- .||. +....+| .+++. ..++++|+|
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~--------qdp~i~~~~~v~D-EE~Ld-f~ens~DLi 141 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDA--------QDPSIETSYFVGD-EEFLD-FKENSVDLI 141 (325)
T ss_pred CcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhcc--------CCCceEEEEEecc-hhccc-ccccchhhh
Confidence 4579999999999999998884 89999999999999999874 2344 3455666 45554 447899999
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEE
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVST 239 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~ 239 (345)
|...+.+|... | ...+.+|+..|||+|.|+.
T Consensus 142 isSlslHW~Nd--L--Pg~m~~ck~~lKPDg~Fia 172 (325)
T KOG2940|consen 142 ISSLSLHWTND--L--PGSMIQCKLALKPDGLFIA 172 (325)
T ss_pred hhhhhhhhhcc--C--chHHHHHHHhcCCCccchh
Confidence 98777666431 1 4678999999999999985
No 195
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.14 E-value=4e-05 Score=75.02 Aligned_cols=129 Identities=20% Similarity=0.190 Sum_probs=76.2
Q ss_pred CceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhC----------
Q 019187 127 PKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV---------- 196 (345)
Q Consensus 127 ~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~---------- 196 (345)
+.+|||+-||.|.++..+++. ..+|++||+++.+++.|++++..+ +-.+++++.+++.++....
T Consensus 197 ~~~vlDlycG~G~fsl~la~~--~~~V~gvE~~~~av~~A~~Na~~N----~i~n~~f~~~~~~~~~~~~~~~r~~~~~~ 270 (352)
T PF05958_consen 197 KGDVLDLYCGVGTFSLPLAKK--AKKVIGVEIVEEAVEDARENAKLN----GIDNVEFIRGDAEDFAKALAKAREFNRLK 270 (352)
T ss_dssp TTEEEEES-TTTCCHHHHHCC--SSEEEEEES-HHHHHHHHHHHHHT----T--SEEEEE--SHHCCCHHCCS-GGTTGG
T ss_pred CCcEEEEeecCCHHHHHHHhh--CCeEEEeeCCHHHHHHHHHHHHHc----CCCcceEEEeeccchhHHHHhhHHHHhhh
Confidence 348999999999999999988 579999999999999999998765 2347999998876653211
Q ss_pred ----CCCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEeccchhhhhhHHHHHHHHHHhhcCCcceEEEEE
Q 019187 197 ----PEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTT 272 (345)
Q Consensus 197 ----~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s~~~~~~~~~~i~~~l~~~F~~~v~~~~~~ 272 (345)
....+|+||+|++.... ...+.+.+.+ + .=++.+.+ +| ..+.+=++.+.+-|. + -....
T Consensus 271 ~~~~~~~~~d~vilDPPR~G~------~~~~~~~~~~-~--~~ivYvSC-nP----~tlaRDl~~L~~~y~--~-~~v~~ 333 (352)
T PF05958_consen 271 GIDLKSFKFDAVILDPPRAGL------DEKVIELIKK-L--KRIVYVSC-NP----ATLARDLKILKEGYK--L-EKVQP 333 (352)
T ss_dssp GS-GGCTTESEEEE---TT-S------CHHHHHHHHH-S--SEEEEEES--H----HHHHHHHHHHHCCEE--E-EEEEE
T ss_pred hhhhhhcCCCEEEEcCCCCCc------hHHHHHHHhc-C--CeEEEEEC-CH----HHHHHHHHHHhhcCE--E-EEEEE
Confidence 12368999999875322 2455665543 3 33444433 33 223333344444441 2 12345
Q ss_pred EeecCC
Q 019187 273 VPTYPS 278 (345)
Q Consensus 273 vP~y~~ 278 (345)
+..||.
T Consensus 334 ~DmFP~ 339 (352)
T PF05958_consen 334 VDMFPQ 339 (352)
T ss_dssp E-SSTT
T ss_pred eecCCC
Confidence 667764
No 196
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.11 E-value=4.1e-06 Score=79.44 Aligned_cols=116 Identities=20% Similarity=0.246 Sum_probs=80.0
Q ss_pred CCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCC--CCCEEEEEechHhH-HhhC---CC
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFE--DPRVTLHIGDGVAF-LKAV---PE 198 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~--~~rv~v~~~D~~~~-l~~~---~~ 198 (345)
+....||+||||-|+-++-..+. ++..++++||.+..|+.|++....+..-.. .=.+.++.+|...- +.+. .+
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kA-gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKA-GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred ccccccceeccCCcccHhHhhhh-cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 45678999999999988887776 588999999999999999987765532111 01367889997543 2211 24
Q ss_pred CCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 199 GTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 199 ~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
.+||+|-|-..-+..-...--..-+++++.++|+|||+|+-..
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTi 237 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTI 237 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEec
Confidence 4599988754333221111112458899999999999999754
No 197
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.10 E-value=2.3e-05 Score=72.16 Aligned_cols=67 Identities=13% Similarity=0.127 Sum_probs=46.8
Q ss_pred EEEcCeEeeeccchhHHHHHHHhcccccCCCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHH
Q 019187 96 LILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDV 165 (345)
Q Consensus 96 L~lDg~~q~~~~de~~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ 165 (345)
+.+++....-.+..+...+++.++... .+.++|||+|||+|+++..++++ +..+|++||+++.++..
T Consensus 47 I~v~~~~~~vsr~~~kL~~~l~~~~~~--~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 47 IELLQNPLFVSRGGEKLKEALEEFNID--VKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAE 113 (228)
T ss_pred EeccCccchhhhhHHHHHHHHHhcCCC--CCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHH
Confidence 444443223334445556666665432 25578999999999999999998 47899999999966554
No 198
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.08 E-value=2.1e-05 Score=83.08 Aligned_cols=113 Identities=20% Similarity=0.292 Sum_probs=79.8
Q ss_pred CceEEEEeccchHHHHHHHhcC-------C-----CcEEEEEECCH---HHHHHHHhccccc--------------ccC-
Q 019187 127 PKKVLVIGGGDGGVLREVSRHS-------S-----VEKIDICEIDK---MVVDVSKQFFPDV--------------AVG- 176 (345)
Q Consensus 127 ~~~VL~IG~G~G~~~~~ll~~~-------~-----~~~V~~VEid~---~vi~~ar~~~~~~--------------~~~- 176 (345)
.-+|||+|.|+|......++.. + .-+++.+|.+| +-+..+-+.++.. ..+
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 4689999999999766654321 1 24788999865 2222222112211 001
Q ss_pred ----CCCC--CEEEEEechHhHHhhCCCCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 177 ----FEDP--RVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 177 ----~~~~--rv~v~~~D~~~~l~~~~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
+.+. +++++.+|+++.+++. ..++|+|+.|.+.|... +.+++.++|+.++++++|||++++.+
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~-~~~~d~~~lD~FsP~~n-p~~W~~~~~~~l~~~~~~~~~~~t~t 206 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQL-DARADAWFLDGFAPAKN-PDMWSPNLFNALARLARPGATLATFT 206 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhc-cccccEEEeCCCCCccC-hhhccHHHHHHHHHHhCCCCEEEEee
Confidence 1222 4568899999999876 46799999999988543 56899999999999999999999865
No 199
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.08 E-value=9.3e-06 Score=70.48 Aligned_cols=81 Identities=15% Similarity=0.076 Sum_probs=57.8
Q ss_pred EEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCC
Q 019187 154 DICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRP 233 (345)
Q Consensus 154 ~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~Lkp 233 (345)
+++|+++.|++.|++.......+ ...+++++.+|+.+.- .++++||+|++...-.... . ..+++++++|+|||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~-~~~~i~~~~~d~~~lp--~~~~~fD~v~~~~~l~~~~--d--~~~~l~ei~rvLkp 73 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARS-CYKCIEWIEGDAIDLP--FDDCEFDAVTMGYGLRNVV--D--RLRAMKEMYRVLKP 73 (160)
T ss_pred CeEcCCHHHHHHHHHhhhccccc-CCCceEEEEechhhCC--CCCCCeeEEEecchhhcCC--C--HHHHHHHHHHHcCc
Confidence 48999999999998765422101 1247999999987752 2367899999754332221 1 25889999999999
Q ss_pred CcEEEEec
Q 019187 234 GGVVSTQA 241 (345)
Q Consensus 234 gGvlv~~~ 241 (345)
||.+++..
T Consensus 74 GG~l~i~d 81 (160)
T PLN02232 74 GSRVSILD 81 (160)
T ss_pred CeEEEEEE
Confidence 99998753
No 200
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.08 E-value=2.1e-06 Score=68.91 Aligned_cols=98 Identities=23% Similarity=0.306 Sum_probs=46.9
Q ss_pred EEEeccchHHHHHHHhcC-CC--cEEEEEECCHH---HHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 131 LVIGGGDGGVLREVSRHS-SV--EKIDICEIDKM---VVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 131 L~IG~G~G~~~~~ll~~~-~~--~~V~~VEid~~---vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
|+||+..|..+..+++.. .. .++++||..+. .-+..++ . ++ ..+++++.+|..+++...+.++||+|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~----~--~~-~~~~~~~~g~s~~~l~~~~~~~~dli 73 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK----A--GL-SDRVEFIQGDSPDFLPSLPDGPIDLI 73 (106)
T ss_dssp --------------------------EEEESS----------------G--GG--BTEEEEES-THHHHHHHHH--EEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhh----c--CC-CCeEEEEEcCcHHHHHHcCCCCEEEE
Confidence 689999999988887652 22 37999999994 3333333 1 11 24799999999998877634899999
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEe
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~ 240 (345)
++|...... .....++.+.+.|+|||++++.
T Consensus 74 ~iDg~H~~~-----~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 74 FIDGDHSYE-----AVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp EEES---HH-----HHHHHHHHHGGGEEEEEEEEEE
T ss_pred EECCCCCHH-----HHHHHHHHHHHHcCCCeEEEEe
Confidence 999853211 1356788999999999999974
No 201
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.07 E-value=2.2e-05 Score=74.91 Aligned_cols=77 Identities=18% Similarity=0.170 Sum_probs=63.5
Q ss_pred CCceEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCC--CCcc
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHS-SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPE--GTYD 202 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~-~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~--~~yD 202 (345)
....+||++||.|+-+..+++.. +..+|+++|+|+++++.|++.+.. ..+++++.+|..++....+. .++|
T Consensus 19 pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~------~~ri~~i~~~f~~l~~~l~~~~~~vD 92 (296)
T PRK00050 19 PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP------FGRFTLVHGNFSNLKEVLAEGLGKVD 92 (296)
T ss_pred CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc------CCcEEEEeCCHHHHHHHHHcCCCccC
Confidence 34689999999999999999874 357899999999999999987642 25899999999887654422 2799
Q ss_pred EEEEcC
Q 019187 203 AVIVDS 208 (345)
Q Consensus 203 vIi~D~ 208 (345)
.|++|+
T Consensus 93 gIl~DL 98 (296)
T PRK00050 93 GILLDL 98 (296)
T ss_pred EEEECC
Confidence 999986
No 202
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.07 E-value=7.3e-06 Score=69.47 Aligned_cols=97 Identities=16% Similarity=0.199 Sum_probs=69.1
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
..+++++||||.|.+....+ .++.+.|.++||||+.++.++++..++ .-++++++.|..+.... .+.||..+
T Consensus 48 Egkkl~DLgcgcGmLs~a~s-m~~~e~vlGfDIdpeALEIf~rNaeEf-----EvqidlLqcdildle~~--~g~fDtav 119 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFS-MPKNESVLGFDIDPEALEIFTRNAEEF-----EVQIDLLQCDILDLELK--GGIFDTAV 119 (185)
T ss_pred cCcchhhhcCchhhhHHHhh-cCCCceEEeeecCHHHHHHHhhchHHh-----hhhhheeeeeccchhcc--CCeEeeEE
Confidence 57899999999999885544 456789999999999999999987765 22447777776554332 48899999
Q ss_pred EcCCCCCCCccccCcHHHHHHHHhccC
Q 019187 206 VDSSDPIGPAQELFEKPFFESVAKALR 232 (345)
Q Consensus 206 ~D~~~p~~~~~~l~t~ef~~~v~r~Lk 232 (345)
+|.+. +....-..-+|.+...++.+
T Consensus 120 iNppF--GTk~~~aDm~fv~~al~~~~ 144 (185)
T KOG3420|consen 120 INPPF--GTKKKGADMEFVSAALKVAS 144 (185)
T ss_pred ecCCC--CcccccccHHHHHHHHHHHH
Confidence 88754 33222234566666655544
No 203
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.07 E-value=7.8e-06 Score=72.12 Aligned_cols=114 Identities=17% Similarity=0.198 Sum_probs=83.3
Q ss_pred hHHHHHHHhcccccCCCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEech
Q 019187 110 CAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDG 189 (345)
Q Consensus 110 ~~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~ 189 (345)
+.+.+++...+ ...+.|+|.|+|.++...++. .++|.++|.||...+.|++++... .+.+++++.+|+
T Consensus 22 avF~~ai~~va------~d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~----g~~n~evv~gDA 89 (252)
T COG4076 22 AVFTSAIAEVA------EDTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVP----GDVNWEVVVGDA 89 (252)
T ss_pred HHHHHHHHHHh------hhceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCC----CCcceEEEeccc
Confidence 34555554432 257899999999888877766 689999999999999999997543 456899999999
Q ss_pred HhHHhhCCCCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 190 VAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 190 ~~~l~~~~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
+.|- -+..|+|||..-|..-..+. ....+..+.+.|+.++.++-|.
T Consensus 90 ~~y~----fe~ADvvicEmlDTaLi~E~--qVpV~n~vleFLr~d~tiiPq~ 135 (252)
T COG4076 90 RDYD----FENADVVICEMLDTALIEEK--QVPVINAVLEFLRYDPTIIPQE 135 (252)
T ss_pred cccc----ccccceeHHHHhhHHhhccc--ccHHHHHHHHHhhcCCccccHH
Confidence 9882 25679999866553221111 1356777777888999887543
No 204
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=98.06 E-value=1.7e-05 Score=66.09 Aligned_cols=93 Identities=22% Similarity=0.405 Sum_probs=62.9
Q ss_pred CCEEEEEechHhHHhhCCCCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEeccchhhhhhHHHHHHHHHH
Q 019187 180 PRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCR 259 (345)
Q Consensus 180 ~rv~v~~~D~~~~l~~~~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s~~~~~~~~~~i~~~l~ 259 (345)
-+++++.+|+++.++.. ...+|+|+.|.+.|... +.+++.++++.++++++|||++++.+.. ..+.+.+.
T Consensus 31 v~L~L~~gDa~~~l~~l-~~~~Da~ylDgFsP~~n-PelWs~e~~~~l~~~~~~~~~l~Tys~a--------~~Vr~~L~ 100 (124)
T PF05430_consen 31 VTLTLWFGDAREMLPQL-DARFDAWYLDGFSPAKN-PELWSEELFKKLARLSKPGGTLATYSSA--------GAVRRALQ 100 (124)
T ss_dssp EEEEEEES-HHHHHHHB--T-EEEEEE-SS-TTTS-GGGSSHHHHHHHHHHEEEEEEEEES--B--------HHHHHHHH
T ss_pred EEEEEEEcHHHHHHHhC-cccCCEEEecCCCCcCC-cccCCHHHHHHHHHHhCCCcEEEEeech--------HHHHHHHH
Confidence 45689999999999987 68999999999988544 5689999999999999999999986532 12334444
Q ss_pred hhcCCcceEEEEEEeecCCCcEEEEEEec
Q 019187 260 QIFKGSVNYAWTTVPTYPSGVIGFMLCST 288 (345)
Q Consensus 260 ~~F~~~v~~~~~~vP~y~~g~w~~~~ask 288 (345)
++ .+.....|.|+ +-...+.|+|
T Consensus 101 ~a-----GF~v~~~~g~g-~Kr~~~~a~~ 123 (124)
T PF05430_consen 101 QA-----GFEVEKVPGFG-RKREMLRAVK 123 (124)
T ss_dssp HC-----TEEEEEEE-ST-TSSEEEEEEC
T ss_pred Hc-----CCEEEEcCCCC-CcchheEEEc
Confidence 32 23345678774 3445666654
No 205
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.04 E-value=1.1e-05 Score=77.18 Aligned_cols=116 Identities=22% Similarity=0.239 Sum_probs=72.7
Q ss_pred CCCceEEEEeccchHHHHHHHhc-------CCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCC
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRH-------SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVP 197 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~-------~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~ 197 (345)
....+|||-.||+|+++.++.++ ....++.++|+|+.++.+|+-++... +.......+..+|....-....
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~--~~~~~~~~i~~~d~l~~~~~~~ 122 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLH--GIDNSNINIIQGDSLENDKFIK 122 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHT--THHCBGCEEEES-TTTSHSCTS
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhh--cccccccccccccccccccccc
Confidence 34568999999999999888763 23568999999999999998765322 2223345688888654322111
Q ss_pred CCCccEEEEcCCCCCC--Cccc---------------cCcHHHHHHHHhccCCCcEEEEecc
Q 019187 198 EGTYDAVIVDSSDPIG--PAQE---------------LFEKPFFESVAKALRPGGVVSTQAE 242 (345)
Q Consensus 198 ~~~yDvIi~D~~~p~~--~~~~---------------l~t~ef~~~v~r~LkpgGvlv~~~~ 242 (345)
..+||+|+++++-... .... -....|++.+.+.|++||.+++-..
T Consensus 123 ~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 123 NQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp T--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 4689999988754322 0000 0113588999999999998665443
No 206
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.04 E-value=8e-06 Score=74.69 Aligned_cols=108 Identities=19% Similarity=0.314 Sum_probs=75.1
Q ss_pred CCceEEEEeccchHHHHHHHhcCCC--cEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHh--HHhhCCCCCc
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSV--EKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVA--FLKAVPEGTY 201 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~--~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~--~l~~~~~~~y 201 (345)
.+.++|+||||.|.+..-+++..+. -.|.++|-+|..+++.+++-.. +..++.-.+-|... .....+.++.
T Consensus 71 ~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~-----~e~~~~afv~Dlt~~~~~~~~~~~sv 145 (264)
T KOG2361|consen 71 SAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGY-----DESRVEAFVWDLTSPSLKEPPEEGSV 145 (264)
T ss_pred ChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhcccc-----chhhhcccceeccchhccCCCCcCcc
Confidence 3458999999999999999987544 6899999999999999987543 33455554445322 2222246889
Q ss_pred cEEEEcCCC-CCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 202 DAVIVDSSD-PIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 202 DvIi~D~~~-p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
|+|++-..- .+++.. -...++.++++|||||.++...
T Consensus 146 D~it~IFvLSAi~pek---~~~a~~nl~~llKPGG~llfrD 183 (264)
T KOG2361|consen 146 DIITLIFVLSAIHPEK---MQSVIKNLRTLLKPGGSLLFRD 183 (264)
T ss_pred ceEEEEEEEeccChHH---HHHHHHHHHHHhCCCcEEEEee
Confidence 988752211 112211 1467899999999999999853
No 207
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.03 E-value=5.8e-05 Score=67.22 Aligned_cols=100 Identities=20% Similarity=0.219 Sum_probs=74.0
Q ss_pred eEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEEEcC
Q 019187 129 KVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDS 208 (345)
Q Consensus 129 ~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi~D~ 208 (345)
+++|||+|.|-=+.-++-..+..+++.||....=+...+.-.... +-++++++++.+.+ .. ..++||+|++-+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L----~L~nv~v~~~R~E~--~~-~~~~fd~v~aRA 123 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVREL----GLSNVEVINGRAEE--PE-YRESFDVVTARA 123 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHH----T-SSEEEEES-HHH--TT-TTT-EEEEEEES
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHh----CCCCEEEEEeeecc--cc-cCCCccEEEeeh
Confidence 899999999986666655445678999999987666665544433 23479999999887 22 278899999877
Q ss_pred CCCCCCccccCcHHHHHHHHhccCCCcEEEEeccc
Q 019187 209 SDPIGPAQELFEKPFFESVAKALRPGGVVSTQAES 243 (345)
Q Consensus 209 ~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s 243 (345)
..+ -..+++.+...|++||.++..-+.
T Consensus 124 v~~--------l~~l~~~~~~~l~~~G~~l~~KG~ 150 (184)
T PF02527_consen 124 VAP--------LDKLLELARPLLKPGGRLLAYKGP 150 (184)
T ss_dssp SSS--------HHHHHHHHGGGEEEEEEEEEEESS
T ss_pred hcC--------HHHHHHHHHHhcCCCCEEEEEcCC
Confidence 654 247899999999999999986544
No 208
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.96 E-value=1.8e-05 Score=76.01 Aligned_cols=102 Identities=23% Similarity=0.341 Sum_probs=72.1
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
+.+.|||+|||+|.+....++.. ..+|.+||-+..+ +.|++-+..+ +++ ..++++.+...+. ..|.++.|+||
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia-~~a~~iv~~N--~~~-~ii~vi~gkvEdi--~LP~eKVDiIv 132 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIA-DFARKIVKDN--GLE-DVITVIKGKVEDI--ELPVEKVDIIV 132 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHH-HHHHHHHHhc--Ccc-ceEEEeecceEEE--ecCccceeEEe
Confidence 56899999999999999999985 7899999997655 8888866554 344 3789998887765 34468999999
Q ss_pred EcCCCCCCCccccCcHHHHHHH----HhccCCCcEEEE
Q 019187 206 VDSSDPIGPAQELFEKPFFESV----AKALRPGGVVST 239 (345)
Q Consensus 206 ~D~~~p~~~~~~l~t~ef~~~v----~r~LkpgGvlv~ 239 (345)
...-.- .|+-...+..+ -+-|+|||++.=
T Consensus 133 SEWMGy-----~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 133 SEWMGY-----FLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred ehhhhH-----HHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 653221 11111122222 357999998754
No 209
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.95 E-value=1.5e-05 Score=76.68 Aligned_cols=98 Identities=20% Similarity=0.231 Sum_probs=68.8
Q ss_pred CceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEEE
Q 019187 127 PKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIV 206 (345)
Q Consensus 127 ~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi~ 206 (345)
-...+|+|+|.|.+++.++.+++ +|.+++.|...+..++.++. +.|+-+.+|+++-++ + -|+|++
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp--~ik~infdlp~v~~~a~~~~--------~gV~~v~gdmfq~~P---~--~daI~m 242 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYP--HIKGINFDLPFVLAAAPYLA--------PGVEHVAGDMFQDTP---K--GDAIWM 242 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCC--CCceeecCHHHHHhhhhhhc--------CCcceecccccccCC---C--cCeEEE
Confidence 46899999999999999988754 58999999665555555542 237888888655432 2 368887
Q ss_pred cCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 207 DSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 207 D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
-.--+.....++ ..|+++|++.|+|||.+++--
T Consensus 243 kWiLhdwtDedc--vkiLknC~~sL~~~GkIiv~E 275 (342)
T KOG3178|consen 243 KWILHDWTDEDC--VKILKNCKKSLPPGGKIIVVE 275 (342)
T ss_pred EeecccCChHHH--HHHHHHHHHhCCCCCEEEEEe
Confidence 322222221222 589999999999999988743
No 210
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.92 E-value=3.9e-05 Score=71.38 Aligned_cols=78 Identities=19% Similarity=0.221 Sum_probs=62.4
Q ss_pred CCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
..+.-||+||.|+|.++..++.. .++|++||+|+.++...++.+... ....+++++.+|. ++. +...||.+
T Consensus 57 k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gt---p~~~kLqV~~gD~---lK~-d~P~fd~c 127 (315)
T KOG0820|consen 57 KPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGT---PKSGKLQVLHGDF---LKT-DLPRFDGC 127 (315)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCC---CccceeeEEeccc---ccC-CCccccee
Confidence 45678999999999999999998 579999999999998888876542 1246899999994 432 24789999
Q ss_pred EEcCCCC
Q 019187 205 IVDSSDP 211 (345)
Q Consensus 205 i~D~~~p 211 (345)
|.+.+..
T Consensus 128 VsNlPyq 134 (315)
T KOG0820|consen 128 VSNLPYQ 134 (315)
T ss_pred eccCCcc
Confidence 9876643
No 211
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.90 E-value=9.2e-05 Score=69.83 Aligned_cols=109 Identities=17% Similarity=0.327 Sum_probs=64.8
Q ss_pred CCceEEEEeccchHHHHH-HHh-cCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccE
Q 019187 126 NPKKVLVIGGGDGGVLRE-VSR-HSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~-ll~-~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDv 203 (345)
.|++|+.||+|.-=++.- +++ +.....|+++|+|++.++.+++-.... .++ ..+++++.+|+.....+ -..||+
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~-~~L-~~~m~f~~~d~~~~~~d--l~~~Dv 195 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASD-LGL-SKRMSFITADVLDVTYD--LKEYDV 195 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH----HH--SSEEEEES-GGGG-GG------SE
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhc-ccc-cCCeEEEecchhccccc--cccCCE
Confidence 467999999997655444 444 334568999999999999999866511 122 45899999998765443 267999
Q ss_pred EEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 204 Ii~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
|++.+--..... -..+.++.+.+.++||.++++.+
T Consensus 196 V~lAalVg~~~e---~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 196 VFLAALVGMDAE---PKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp EEE-TT-S-------SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred EEEhhhcccccc---hHHHHHHHHHhhCCCCcEEEEec
Confidence 997654321111 14689999999999999999875
No 212
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.89 E-value=0.00026 Score=69.44 Aligned_cols=117 Identities=15% Similarity=0.229 Sum_probs=87.1
Q ss_pred CCceEEEEeccchHHHHHHHhcCC--CcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCC-CCcc
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSS--VEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPE-GTYD 202 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~--~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~-~~yD 202 (345)
...+|||+..+.|+=+.+++..-. ...|+++|+|+.=++..++++... .-.++.++..|+..+...... ++||
T Consensus 156 pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~Rl----G~~nv~~~~~d~~~~~~~~~~~~~fD 231 (355)
T COG0144 156 PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRL----GVRNVIVVNKDARRLAELLPGGEKFD 231 (355)
T ss_pred CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHc----CCCceEEEecccccccccccccCcCc
Confidence 357999999999998888887633 245699999999999999888765 334588999998876544323 3699
Q ss_pred EEEEcCCCCC-CC----cc-------------ccCcHHHHHHHHhccCCCcEEEEeccchhh
Q 019187 203 AVIVDSSDPI-GP----AQ-------------ELFEKPFFESVAKALRPGGVVSTQAESIWL 246 (345)
Q Consensus 203 vIi~D~~~p~-~~----~~-------------~l~t~ef~~~v~r~LkpgGvlv~~~~s~~~ 246 (345)
.|++|++... +. +. .-+..+++....+.|||||+|+-.++|...
T Consensus 232 ~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~ 293 (355)
T COG0144 232 RILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP 293 (355)
T ss_pred EEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch
Confidence 9999997532 11 00 012467889999999999999987766543
No 213
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.86 E-value=7.4e-05 Score=79.51 Aligned_cols=112 Identities=17% Similarity=0.185 Sum_probs=75.9
Q ss_pred CceEEEEeccchHHHHHHHhc-----C-------------------------------------CCcEEEEEECCHHHHH
Q 019187 127 PKKVLVIGGGDGGVLREVSRH-----S-------------------------------------SVEKIDICEIDKMVVD 164 (345)
Q Consensus 127 ~~~VL~IG~G~G~~~~~ll~~-----~-------------------------------------~~~~V~~VEid~~vi~ 164 (345)
...++|-+||+|.++.|.+.. | ...+|+++|+|+.+++
T Consensus 191 ~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~ 270 (702)
T PRK11783 191 GTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQ 270 (702)
T ss_pred CCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHH
Confidence 468999999999999997541 1 1126999999999999
Q ss_pred HHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEEEcCCCCCCCccccCcHHHHHHHHhccC---CCcEEEEec
Q 019187 165 VSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALR---PGGVVSTQA 241 (345)
Q Consensus 165 ~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~Lk---pgGvlv~~~ 241 (345)
.|++++... ++. .++++..+|+.++......++||+|++|++-.......--..++|+.+-+.|+ +|+.+++-+
T Consensus 271 ~A~~N~~~~--g~~-~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt 347 (702)
T PRK11783 271 AARKNARRA--GVA-ELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFS 347 (702)
T ss_pred HHHHHHHHc--CCC-cceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 999998764 333 37899999988764322235799999886542211111112356666555554 787776544
No 214
>PRK10742 putative methyltransferase; Provisional
Probab=97.86 E-value=0.00011 Score=68.18 Aligned_cols=82 Identities=13% Similarity=0.094 Sum_probs=67.3
Q ss_pred eEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhccccccc--CCCC---CCEEEEEechHhHHhhCCCCCccE
Q 019187 129 KVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAV--GFED---PRVTLHIGDGVAFLKAVPEGTYDA 203 (345)
Q Consensus 129 ~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~--~~~~---~rv~v~~~D~~~~l~~~~~~~yDv 203 (345)
+|||+-+|.|..+.+++.. + .+|++||-++.+..+.++.+..... .... .|++++.+|..+|++.. ...||+
T Consensus 91 ~VLD~TAGlG~Da~~las~-G-~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~-~~~fDV 167 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASV-G-CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI-TPRPQV 167 (250)
T ss_pred EEEECCCCccHHHHHHHHc-C-CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhC-CCCCcE
Confidence 8999999999999999988 3 4599999999999999987765310 1111 47999999999999876 458999
Q ss_pred EEEcCCCCCC
Q 019187 204 VIVDSSDPIG 213 (345)
Q Consensus 204 Ii~D~~~p~~ 213 (345)
|++|+..|..
T Consensus 168 VYlDPMfp~~ 177 (250)
T PRK10742 168 VYLDPMFPHK 177 (250)
T ss_pred EEECCCCCCC
Confidence 9999987753
No 215
>PRK04148 hypothetical protein; Provisional
Probab=97.77 E-value=0.00015 Score=61.08 Aligned_cols=67 Identities=13% Similarity=0.120 Sum_probs=50.3
Q ss_pred CCceEEEEeccchH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 126 NPKKVLVIGGGDGG-VLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 126 ~~~~VL~IG~G~G~-~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
+.++||+||||.|. ++..+.+. ..+|+++|+++..++.+++. .++++.+|.++--.+. -+.+|+|
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~-----------~~~~v~dDlf~p~~~~-y~~a~li 81 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKL-----------GLNAFVDDLFNPNLEI-YKNAKLI 81 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHh-----------CCeEEECcCCCCCHHH-HhcCCEE
Confidence 45789999999996 77777766 35899999999999988774 2567888865432221 2568999
Q ss_pred EE
Q 019187 205 IV 206 (345)
Q Consensus 205 i~ 206 (345)
..
T Consensus 82 ys 83 (134)
T PRK04148 82 YS 83 (134)
T ss_pred EE
Confidence 84
No 216
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.74 E-value=0.00054 Score=63.90 Aligned_cols=120 Identities=19% Similarity=0.215 Sum_probs=83.8
Q ss_pred CCCceEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccE
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRH-SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~-~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDv 203 (345)
....+||+-|.|+|++...+++. .+-.++...|.++.-.+.|++.|... ++ ..++++...|...-=.......+|+
T Consensus 104 ~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~h--gi-~~~vt~~hrDVc~~GF~~ks~~aDa 180 (314)
T KOG2915|consen 104 RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREH--GI-GDNVTVTHRDVCGSGFLIKSLKADA 180 (314)
T ss_pred CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHh--CC-CcceEEEEeecccCCccccccccce
Confidence 34569999999999999999986 34579999999999999999888764 33 3589998888643211112578999
Q ss_pred EEEcCCCCCCCccccCcHHHHHHHHhccCCCc-EEEEeccchhhhhhHHHHHHHHHHh
Q 019187 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGG-VVSTQAESIWLHMHIIEDIVANCRQ 260 (345)
Q Consensus 204 Ii~D~~~p~~~~~~l~t~ef~~~v~r~LkpgG-vlv~~~~s~~~~~~~~~~i~~~l~~ 260 (345)
|++|.+.||.. +-.++++|+.+| .+|-- ||+. +.+++..+.+++
T Consensus 181 VFLDlPaPw~A---------iPha~~~lk~~g~r~csF--SPCI--EQvqrtce~l~~ 225 (314)
T KOG2915|consen 181 VFLDLPAPWEA---------IPHAAKILKDEGGRLCSF--SPCI--EQVQRTCEALRS 225 (314)
T ss_pred EEEcCCChhhh---------hhhhHHHhhhcCceEEec--cHHH--HHHHHHHHHHHh
Confidence 99999998754 333445788877 55532 2332 334444444544
No 217
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.72 E-value=0.00043 Score=65.29 Aligned_cols=117 Identities=21% Similarity=0.367 Sum_probs=82.5
Q ss_pred CCCceEEEEeccchHHHHHHHhc-CC-CcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhH--HhhCCCCC
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRH-SS-VEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAF--LKAVPEGT 200 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~-~~-~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~--l~~~~~~~ 200 (345)
..|-+||||.||.|.....++.. +. ..+|...|.++.-++..++..... ++.+ -+++.++|+++. +... ..+
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~--gL~~-i~~f~~~dAfd~~~l~~l-~p~ 209 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAER--GLED-IARFEQGDAFDRDSLAAL-DPA 209 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHc--CCcc-ceEEEecCCCCHhHhhcc-CCC
Confidence 46789999999999988887654 43 479999999999999999876653 4443 459999999875 3333 456
Q ss_pred ccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEeccchhhh
Q 019187 201 YDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLH 247 (345)
Q Consensus 201 yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s~~~~ 247 (345)
.+++|+..-...-+...+ -..-++.+.++|.|||.++. ++.||+.
T Consensus 210 P~l~iVsGL~ElF~Dn~l-v~~sl~gl~~al~pgG~lIy-TgQPwHP 254 (311)
T PF12147_consen 210 PTLAIVSGLYELFPDNDL-VRRSLAGLARALEPGGYLIY-TGQPWHP 254 (311)
T ss_pred CCEEEEecchhhCCcHHH-HHHHHHHHHHHhCCCcEEEE-cCCCCCc
Confidence 788876321111111111 13467889999999999986 4556654
No 218
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.70 E-value=0.00012 Score=66.05 Aligned_cols=110 Identities=16% Similarity=0.260 Sum_probs=71.6
Q ss_pred eEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccc-cCCCCCCEEEEEech-HhHHhh--CCCCCccEE
Q 019187 129 KVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVA-VGFEDPRVTLHIGDG-VAFLKA--VPEGTYDAV 204 (345)
Q Consensus 129 ~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~-~~~~~~rv~v~~~D~-~~~l~~--~~~~~yDvI 204 (345)
+||+||+|+|.-+.+++++.+...-.--|.|+......+.+..... .... +-+.+-..+. ..+... ...+.||+|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~-~P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVR-PPLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccC-CCeEeecCCCCCccccccccCCCCccee
Confidence 6999999999999999998766677788999888655555443321 0111 1222222221 122100 024689999
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
++--.-++.+... +..+|+.+.++|++||+|++..
T Consensus 107 ~~~N~lHI~p~~~--~~~lf~~a~~~L~~gG~L~~YG 141 (204)
T PF06080_consen 107 FCINMLHISPWSA--VEGLFAGAARLLKPGGLLFLYG 141 (204)
T ss_pred eehhHHHhcCHHH--HHHHHHHHHHhCCCCCEEEEeC
Confidence 9744444443222 4689999999999999999976
No 219
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.68 E-value=0.0001 Score=69.22 Aligned_cols=101 Identities=22% Similarity=0.248 Sum_probs=72.2
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhC-CCCCccEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV-PEGTYDAV 204 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~-~~~~yDvI 204 (345)
+...|||||.|.|.++++++++. .++++||+|+..++..++.+. .+++++++.+|+.++-... -......|
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~------~~~~~~vi~~D~l~~~~~~~~~~~~~~v 101 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFA------SNPNVEVINGDFLKWDLYDLLKNQPLLV 101 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCT------TCSSEEEEES-TTTSCGGGHCSSSEEEE
T ss_pred CCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhh------hcccceeeecchhccccHHhhcCCceEE
Confidence 56799999999999999999984 799999999999999998775 3579999999988763211 02355677
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccC---CCcEEEEec
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALR---PGGVVSTQA 241 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~Lk---pgGvlv~~~ 241 (345)
+.+.+. .. +..++..+...-+ ...++++|-
T Consensus 102 v~NlPy--~i-----s~~il~~ll~~~~~g~~~~~l~vq~ 134 (262)
T PF00398_consen 102 VGNLPY--NI-----SSPILRKLLELYRFGRVRMVLMVQK 134 (262)
T ss_dssp EEEETG--TG-----HHHHHHHHHHHGGGCEEEEEEEEEH
T ss_pred EEEecc--cc-----hHHHHHHHhhcccccccceEEEEeh
Confidence 766543 21 3455555555222 345666664
No 220
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.68 E-value=0.00045 Score=62.26 Aligned_cols=120 Identities=22% Similarity=0.267 Sum_probs=80.9
Q ss_pred CCCceEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHh-----HH-hhCC
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHS-SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVA-----FL-KAVP 197 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~-~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~-----~l-~~~~ 197 (345)
.+..+|+|||+-.|+.+..+++.- ....|++||++|.- ..+.|.++.+|... -+ ....
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~---------------~~~~V~~iq~d~~~~~~~~~l~~~l~ 108 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK---------------PIPGVIFLQGDITDEDTLEKLLEALG 108 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc---------------cCCCceEEeeeccCccHHHHHHHHcC
Confidence 456899999999999999988873 23359999998752 12457777777632 12 2223
Q ss_pred CCCccEEEEcCCCCCCCc---ccc----CcHHHHHHHHhccCCCcEEEEeccchhhhhhHHHHHHHHHHhhcC
Q 019187 198 EGTYDAVIVDSSDPIGPA---QEL----FEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFK 263 (345)
Q Consensus 198 ~~~yDvIi~D~~~p~~~~---~~l----~t~ef~~~v~r~LkpgGvlv~~~~s~~~~~~~~~~i~~~l~~~F~ 263 (345)
....|+|++|........ .+. .....++.+...|+|||.+++- .+..+....+++.+++.|.
T Consensus 109 ~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K----~fqg~~~~~~l~~~~~~F~ 177 (205)
T COG0293 109 GAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAK----VFQGEDFEDLLKALRRLFR 177 (205)
T ss_pred CCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEE----EEeCCCHHHHHHHHHHhhc
Confidence 455799999987643211 111 1123456667899999999873 3444556788888998884
No 221
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.67 E-value=0.00016 Score=69.06 Aligned_cols=107 Identities=16% Similarity=0.219 Sum_probs=74.0
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
..+-|||+|||+|.+....+.. +.++|.+||-++ |.+.|++....+ .+ ..|+.++-|-..+. +. .++.|+||
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA-GA~~vYAvEAS~-MAqyA~~Lv~~N--~~-~~rItVI~GKiEdi--eL-PEk~DviI 248 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA-GAKKVYAVEASE-MAQYARKLVASN--NL-ADRITVIPGKIEDI--EL-PEKVDVII 248 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh-CcceEEEEehhH-HHHHHHHHHhcC--Cc-cceEEEccCccccc--cC-chhccEEE
Confidence 3578999999999988877766 578999999965 668888765443 23 35899998875553 23 68899999
Q ss_pred EcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEecc
Q 019187 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAE 242 (345)
Q Consensus 206 ~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~ 242 (345)
..+..-....+.+ .|-|-..++.|+|+|.+.-..+
T Consensus 249 SEPMG~mL~NERM--LEsYl~Ark~l~P~GkMfPT~g 283 (517)
T KOG1500|consen 249 SEPMGYMLVNERM--LESYLHARKWLKPNGKMFPTVG 283 (517)
T ss_pred eccchhhhhhHHH--HHHHHHHHhhcCCCCcccCccc
Confidence 6532211111111 3566777899999998865443
No 222
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.60 E-value=0.00024 Score=70.18 Aligned_cols=105 Identities=23% Similarity=0.358 Sum_probs=79.3
Q ss_pred CceEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 127 PKKVLVIGGGDGGVLREVSRH-SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 127 ~~~VL~IG~G~G~~~~~ll~~-~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
+-+|||.=+|+|.=+.-.++. +++.+|++-|+|++.++..++++..+ +..+.++++...|+...+... ...||+|=
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N--~~~~~~~~v~~~DAn~ll~~~-~~~fD~ID 126 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELN--GLEDERIEVSNMDANVLLYSR-QERFDVID 126 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHC--T-SGCCEEEEES-HHHHHCHS-TT-EEEEE
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhc--cccCceEEEehhhHHHHhhhc-cccCCEEE
Confidence 458999999999877666655 67889999999999999999997765 334448999999999988543 78899999
Q ss_pred EcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEecc
Q 019187 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAE 242 (345)
Q Consensus 206 ~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~ 242 (345)
+|++- . -..|+..+.+.++.||+|.+.++
T Consensus 127 lDPfG---S-----p~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 127 LDPFG---S-----PAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp E--SS----------HHHHHHHHHHEEEEEEEEEEE-
T ss_pred eCCCC---C-----ccHhHHHHHHHhhcCCEEEEecc
Confidence 99764 2 14799999999999999998763
No 223
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.59 E-value=0.00028 Score=63.53 Aligned_cols=111 Identities=14% Similarity=0.204 Sum_probs=62.6
Q ss_pred CCceEEEEeccchHH----HHHHHh---c-CC-CcEEEEEECCHHHHHHHHh------------------cc-cccccCC
Q 019187 126 NPKKVLVIGGGDGGV----LREVSR---H-SS-VEKIDICEIDKMVVDVSKQ------------------FF-PDVAVGF 177 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~----~~~ll~---~-~~-~~~V~~VEid~~vi~~ar~------------------~~-~~~~~~~ 177 (345)
.+-||+-.||++|.= +..+.. . .+ .-+|.+.|||+.+++.|++ || +...+.+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 467999999999973 222333 1 11 3489999999999999986 12 1000011
Q ss_pred C-----CCCEEEEEechHhHHhhCCCCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEe
Q 019187 178 E-----DPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (345)
Q Consensus 178 ~-----~~rv~v~~~D~~~~l~~~~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~ 240 (345)
. ..+|++...|..+. ....+.||+|+|--.- +.-. .-.....++.+++.|+|||.|++-
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~--~~~~~~fD~I~CRNVl-IYF~-~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDP--DPPFGRFDLIFCRNVL-IYFD-PETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S--------EEEEEE-SSG-GGS--HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred eEChHHcCceEEEecccCCC--CcccCCccEEEecCEE-EEeC-HHHHHHHHHHHHHHcCCCCEEEEe
Confidence 0 14788888887771 1236889999983211 0100 111357899999999999999983
No 224
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.57 E-value=0.0008 Score=61.97 Aligned_cols=99 Identities=21% Similarity=0.266 Sum_probs=59.3
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
..++||.||=.+.......+... .++|+++|||+.+++.-++..... .-+++.+..|.+.-+...-.++||+++
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~-~~~I~VvDiDeRll~fI~~~a~~~-----gl~i~~~~~DlR~~LP~~~~~~fD~f~ 117 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGL-PKRITVVDIDERLLDFINRVAEEE-----GLPIEAVHYDLRDPLPEELRGKFDVFF 117 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT---SEEEEE-S-HHHHHHHHHHHHHH-----T--EEEE---TTS---TTTSS-BSEEE
T ss_pred cCCEEEEEcCCcHHHHHHHhhCC-CCeEEEEEcCHHHHHHHHHHHHHc-----CCceEEEEecccccCCHHHhcCCCEEE
Confidence 46899999988876555544443 479999999999999988876653 234999999998887653368999999
Q ss_pred EcCCCCCCCccccCcHHHHHHHHhccCCCc
Q 019187 206 VDSSDPIGPAQELFEKPFFESVAKALRPGG 235 (345)
Q Consensus 206 ~D~~~p~~~~~~l~t~ef~~~v~r~LkpgG 235 (345)
.|++. .+ ..+ .-|+......|+..|
T Consensus 118 TDPPy--T~-~G~--~LFlsRgi~~Lk~~g 142 (243)
T PF01861_consen 118 TDPPY--TP-EGL--KLFLSRGIEALKGEG 142 (243)
T ss_dssp E---S--SH-HHH--HHHHHHHHHTB-STT
T ss_pred eCCCC--CH-HHH--HHHHHHHHHHhCCCC
Confidence 88753 11 111 458888899999877
No 225
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.57 E-value=0.0017 Score=59.14 Aligned_cols=98 Identities=19% Similarity=0.192 Sum_probs=71.0
Q ss_pred CceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCC-ccEEE
Q 019187 127 PKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGT-YDAVI 205 (345)
Q Consensus 127 ~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~-yDvIi 205 (345)
+++++|||+|.|-=+.-++-..+..+||.+|....=+...++-..+. +-++++++++-+.++-.+ .+ ||+|.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL----~L~nv~i~~~RaE~~~~~---~~~~D~vt 140 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKEL----GLENVEIVHGRAEEFGQE---KKQYDVVT 140 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHh----CCCCeEEehhhHhhcccc---cccCcEEE
Confidence 68999999999987766653333456999999876555444433222 345899999998887542 23 99999
Q ss_pred EcCCCCCCCccccCcHHHHHHHHhccCCCcEEEE
Q 019187 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVST 239 (345)
Q Consensus 206 ~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~ 239 (345)
+-+..+. ..+.+.|...|++||.++.
T Consensus 141 sRAva~L--------~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 141 SRAVASL--------NVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred eehccch--------HHHHHHHHHhcccCCcchh
Confidence 8765532 3678889999999998865
No 226
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.57 E-value=0.00036 Score=66.28 Aligned_cols=116 Identities=20% Similarity=0.249 Sum_probs=87.2
Q ss_pred CCceEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRH-SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~-~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
...+|||++++.|+=+.+++.. .+...|+++|+++.-+...++++... .-.++.+...|+..+........||.|
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~----g~~~v~~~~~D~~~~~~~~~~~~fd~V 160 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRL----GVFNVIVINADARKLDPKKPESKFDRV 160 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHT----T-SSEEEEESHHHHHHHHHHTTTEEEE
T ss_pred ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhc----CCceEEEEeeccccccccccccccchh
Confidence 4568999999999988888775 33568999999999999988887654 445788888999888654324569999
Q ss_pred EEcCCCCCC------Cc-------c-----ccCcHHHHHHHHhcc----CCCcEEEEeccchh
Q 019187 205 IVDSSDPIG------PA-------Q-----ELFEKPFFESVAKAL----RPGGVVSTQAESIW 245 (345)
Q Consensus 205 i~D~~~p~~------~~-------~-----~l~t~ef~~~v~r~L----kpgGvlv~~~~s~~ 245 (345)
++|++.... +. . .-...+.++.+.+.+ +|||++|-.+.+..
T Consensus 161 lvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~ 223 (283)
T PF01189_consen 161 LVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLS 223 (283)
T ss_dssp EEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHH
T ss_pred hcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHH
Confidence 999875321 10 0 011357889999999 99999998776544
No 227
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.56 E-value=0.0006 Score=68.61 Aligned_cols=179 Identities=17% Similarity=0.278 Sum_probs=91.8
Q ss_pred CCCCCCCcccccCCeeecccCCCCCceeEeecccEEEEeeCCCceEEEEEEcC-----cceEEEEc-CeEeeeccchhHH
Q 019187 39 SNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSST-----YGKVLILD-GVIQLTERDECAY 112 (345)
Q Consensus 39 ~~~~~~~~~~~~~~w~~e~~~~~~~~~~~~~~~~~l~~~~s~yq~i~v~e~~~-----~g~~L~lD-g~~q~~~~de~~Y 112 (345)
++....|+-+...+.=.-+. ||-. .+.+.....++-.+......+ -|..+.+- |..|+.. ....|
T Consensus 31 ~~~~~~CLVp~P~gYk~P~~--WP~S------Rd~iW~~Nvph~~L~~~K~~qnWv~~~gd~~~FPgggt~F~~-Ga~~Y 101 (506)
T PF03141_consen 31 PEERLRCLVPPPKGYKTPIP--WPKS------RDYIWYANVPHTKLAEEKADQNWVRVEGDKFRFPGGGTMFPH-GADHY 101 (506)
T ss_pred CCCCCccccCCCccCCCCCC--CCcc------cceeeecccCchHHhhhcccccceeecCCEEEeCCCCccccC-CHHHH
Confidence 34445666666655322222 6643 233333344444443322211 12233332 3344433 23456
Q ss_pred HHHHHhc-ccc-cCCCCceEEEEeccchHHHHHHHhcCCCcEEE--EEECCHHHHHHHHhc-ccccccCCCCCCEEEEEe
Q 019187 113 QEMITHL-PLC-SIPNPKKVLVIGGGDGGVLREVSRHSSVEKID--ICEIDKMVVDVSKQF-FPDVAVGFEDPRVTLHIG 187 (345)
Q Consensus 113 ~e~l~~l-~l~-~~~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~--~VEid~~vi~~ar~~-~~~~~~~~~~~rv~v~~~ 187 (345)
.+.|..+ +.. ....-+.+||+|||.|.++..++.+. +..+. .-|..+..++.|-+. ++.+ +.++ +
T Consensus 102 id~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~-V~t~s~a~~d~~~~qvqfaleRGvpa~--------~~~~-~ 171 (506)
T PF03141_consen 102 IDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERN-VTTMSFAPNDEHEAQVQFALERGVPAM--------IGVL-G 171 (506)
T ss_pred HHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCC-ceEEEcccccCCchhhhhhhhcCcchh--------hhhh-c
Confidence 6555433 331 23345789999999999999999883 33222 123444455555432 3322 1110 0
Q ss_pred chHhHHhhCCCCCccEEEEc-CCCCCCCccccCcHHHHHHHHhccCCCcEEEEeccc
Q 019187 188 DGVAFLKAVPEGTYDAVIVD-SSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAES 243 (345)
Q Consensus 188 D~~~~l~~~~~~~yDvIi~D-~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s 243 (345)
.+-|. .+.+.||+|-|- +-.++..... -++-++-|+|+|||.++..+..
T Consensus 172 --s~rLP-fp~~~fDmvHcsrc~i~W~~~~g----~~l~evdRvLRpGGyfv~S~pp 221 (506)
T PF03141_consen 172 --SQRLP-FPSNAFDMVHCSRCLIPWHPNDG----FLLFEVDRVLRPGGYFVLSGPP 221 (506)
T ss_pred --ccccc-CCccchhhhhcccccccchhccc----ceeehhhhhhccCceEEecCCc
Confidence 01121 247889999863 2234444322 2566789999999999986543
No 228
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.55 E-value=0.0011 Score=60.51 Aligned_cols=122 Identities=20% Similarity=0.208 Sum_probs=83.8
Q ss_pred CCceEEEEeccchHHHHHHHhc-CCCcEEEEEECCH----HHHHHHHhcccccccCCCCCCEEEEEechHhHHhhC-CCC
Q 019187 126 NPKKVLVIGGGDGGVLREVSRH-SSVEKIDICEIDK----MVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV-PEG 199 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~-~~~~~V~~VEid~----~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~-~~~ 199 (345)
...+||-||..+|.+..+++.- .+...|.+||.++ +++.+|++. +|+--+.+|++.--+-. --+
T Consensus 73 ~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R----------~NIiPIl~DAr~P~~Y~~lv~ 142 (229)
T PF01269_consen 73 PGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR----------PNIIPILEDARHPEKYRMLVE 142 (229)
T ss_dssp TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS----------TTEEEEES-TTSGGGGTTTS-
T ss_pred CCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC----------CceeeeeccCCChHHhhcccc
Confidence 4579999999999999999886 3356899999998 455566653 57888899987543211 136
Q ss_pred CccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec--cch---hhhhhHHHHHHHHHHh-hcC
Q 019187 200 TYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA--ESI---WLHMHIIEDIVANCRQ-IFK 263 (345)
Q Consensus 200 ~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~--~s~---~~~~~~~~~i~~~l~~-~F~ 263 (345)
..|+|+.|...|.. .+=+..++..-||+||.+++-. .|. -.....|.+-.+.+++ -|+
T Consensus 143 ~VDvI~~DVaQp~Q------a~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~ 206 (229)
T PF01269_consen 143 MVDVIFQDVAQPDQ------ARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFK 206 (229)
T ss_dssp -EEEEEEE-SSTTH------HHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCE
T ss_pred cccEEEecCCChHH------HHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCC
Confidence 89999999887642 2456777788999999776533 222 2235678888888886 363
No 229
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.54 E-value=0.00025 Score=64.22 Aligned_cols=108 Identities=19% Similarity=0.250 Sum_probs=61.3
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccc-----cCCCCCCEEEEEechHhH--HhhCCC
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVA-----VGFEDPRVTLHIGDGVAF--LKAVPE 198 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~-----~~~~~~rv~v~~~D~~~~--l~~~~~ 198 (345)
.....+|||||.|.+...++-..+..+..+||+.+...+.|++....+. -+....++++..+|..+. .... -
T Consensus 42 ~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~-~ 120 (205)
T PF08123_consen 42 PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDI-W 120 (205)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHH-G
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhh-h
Confidence 4567899999999999887766568889999999999988876433221 123456888999986532 2211 1
Q ss_pred CCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEE
Q 019187 199 GTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVST 239 (345)
Q Consensus 199 ~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~ 239 (345)
..-|+|+++...- .+.+ ...+......||+|-.+|.
T Consensus 121 s~AdvVf~Nn~~F---~~~l--~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 121 SDADVVFVNNTCF---DPDL--NLALAELLLELKPGARIIS 156 (205)
T ss_dssp HC-SEEEE--TTT----HHH--HHHHHHHHTTS-TT-EEEE
T ss_pred cCCCEEEEecccc---CHHH--HHHHHHHHhcCCCCCEEEE
Confidence 3469999876531 1111 2234555567888877765
No 230
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.49 E-value=0.00054 Score=62.07 Aligned_cols=83 Identities=22% Similarity=0.275 Sum_probs=62.9
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhC--CCCCccE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV--PEGTYDA 203 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~--~~~~yDv 203 (345)
++..|+|.-||.|+.+...+... ..|.++||||.-+..|+.++.-. |..+ |+++++||..+..... .+..+|+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~--~~VisIdiDPikIa~AkhNaeiY--GI~~-rItFI~GD~ld~~~~lq~~K~~~~~ 168 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQG--PYVIAIDIDPVKIACARHNAEVY--GVPD-RITFICGDFLDLASKLKADKIKYDC 168 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhC--CeEEEEeccHHHHHHHhccceee--cCCc-eeEEEechHHHHHHHHhhhhheeee
Confidence 56788888888888777766663 36899999999999999998765 4555 9999999987765543 2455778
Q ss_pred EEEcCCCCCCCc
Q 019187 204 VIVDSSDPIGPA 215 (345)
Q Consensus 204 Ii~D~~~p~~~~ 215 (345)
|+ ++.||+.+
T Consensus 169 vf--~sppwggp 178 (263)
T KOG2730|consen 169 VF--LSPPWGGP 178 (263)
T ss_pred ee--cCCCCCCc
Confidence 88 56666544
No 231
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.46 E-value=0.00043 Score=65.87 Aligned_cols=110 Identities=15% Similarity=0.145 Sum_probs=67.8
Q ss_pred CCceEEEEeccchHHH----HHHHhc----CCCcEEEEEECCHHHHHHHHhcc-cccc-----------------c---C
Q 019187 126 NPKKVLVIGGGDGGVL----REVSRH----SSVEKIDICEIDKMVVDVSKQFF-PDVA-----------------V---G 176 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~----~~ll~~----~~~~~V~~VEid~~vi~~ar~~~-~~~~-----------------~---~ 176 (345)
.+-||.-.||++|.=+ ..+... ...-+|++.|||+.+++.|++-. +... . +
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 3469999999999733 223332 11347999999999999998731 1000 0 0
Q ss_pred -C--C---CCCEEEEEechHhHHhhCCCCCccEEEEc-CCCCCCCccccCcHHHHHHHHhccCCCcEEEE
Q 019187 177 -F--E---DPRVTLHIGDGVAFLKAVPEGTYDAVIVD-SSDPIGPAQELFEKPFFESVAKALRPGGVVST 239 (345)
Q Consensus 177 -~--~---~~rv~v~~~D~~~~l~~~~~~~yDvIi~D-~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~ 239 (345)
+ . ..+|++...|..+.-.. ..+.||+|+|- ..-..... .....++.++++|+|||+|++
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~-~~~~fD~I~cRNvliyF~~~---~~~~vl~~l~~~L~pgG~L~l 260 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWA-VPGPFDAIFCRNVMIYFDKT---TQERILRRFVPLLKPDGLLFA 260 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCc-cCCCcceeeHhhHHhcCCHH---HHHHHHHHHHHHhCCCcEEEE
Confidence 0 0 13566666665442100 14789999972 21111111 135789999999999999987
No 232
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=97.45 E-value=0.00067 Score=68.34 Aligned_cols=112 Identities=17% Similarity=0.275 Sum_probs=80.8
Q ss_pred CceEEEEeccchHHHHHHHhc----CCCcEEEEEECCHHHHHHHHh-cccccccCCCCCCEEEEEechHhHHhhCCCCCc
Q 019187 127 PKKVLVIGGGDGGVLREVSRH----SSVEKIDICEIDKMVVDVSKQ-FFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTY 201 (345)
Q Consensus 127 ~~~VL~IG~G~G~~~~~ll~~----~~~~~V~~VEid~~vi~~ar~-~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~y 201 (345)
+..|+.+|+|-|-+++..++. ..-.++.+||.+|..+-..+. ++..+ +.+|+++-.|.+.|-. +.++.
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W-----~~~Vtii~~DMR~w~a--p~eq~ 440 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECW-----DNRVTIISSDMRKWNA--PREQA 440 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhh-----cCeeEEEeccccccCC--chhhc
Confidence 456889999999988886653 223478899999987766654 34333 4699999999999963 24889
Q ss_pred cEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEeccchhhh
Q 019187 202 DAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLH 247 (345)
Q Consensus 202 DvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s~~~~ 247 (345)
|+|+..+-...+. .-.+.|.+..+.+.|||+|+.+-+....+..
T Consensus 441 DI~VSELLGSFGD--NELSPECLDG~q~fLkpdgIsIP~sYtSyi~ 484 (649)
T KOG0822|consen 441 DIIVSELLGSFGD--NELSPECLDGAQKFLKPDGISIPSSYTSYIA 484 (649)
T ss_pred cchHHHhhccccC--ccCCHHHHHHHHhhcCCCceEccchhhhhhc
Confidence 9999754332222 1236799999999999999998766444433
No 233
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=97.38 E-value=0.00017 Score=67.97 Aligned_cols=187 Identities=17% Similarity=0.121 Sum_probs=125.7
Q ss_pred CCCCCcccccCCeeecccCCCC-CceeEeecccEEEEeeCCCceEEEEEEcCcceEEEEcCeEeeeccchhHHHHHHHhc
Q 019187 41 KQPDCISSVIPGWFSEISPMWP-GEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHL 119 (345)
Q Consensus 41 ~~~~~~~~~~~~w~~e~~~~~~-~~~~~~~~~~~l~~~~s~yq~i~v~e~~~~g~~L~lDg~~q~~~~de~~Y~e~l~~l 119 (345)
...+..+++.++-|.|.....| +.--.++...|++.+.+++|++.|-. +..+.++.+++..+..+.+ ..|...|+.
T Consensus 94 Dgviqlte~de~~Yqemi~~l~l~s~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~s-k~y~p~la~- 170 (337)
T KOG1562|consen 94 DGVIQLTERDEFAYQEMIAHLALCSHPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESS-KQYLPTLAC- 170 (337)
T ss_pred CCeeeCCccccccceeeeeccccccCCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHH-HHHhHHHhc-
Confidence 4456778888888888773333 33456788999999999999998887 7799999999887766654 345443321
Q ss_pred ccccCCCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhc----ccccccCCCCCCEEEEEechHhHHhh
Q 019187 120 PLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQF----FPDVAVGFEDPRVTLHIGDGVAFLKA 195 (345)
Q Consensus 120 ~l~~~~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~----~~~~~~~~~~~rv~v~~~D~~~~l~~ 195 (345)
. -..++|..+|| +|....+.++.. ...|+++|+|..+...+..| |.....++....+.+.++|......+
T Consensus 171 ---g-y~~~~v~l~iG-DG~~fl~~~~~~-~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~~ 244 (337)
T KOG1562|consen 171 ---G-YEGKKVKLLIG-DGFLFLEDLKEN-PFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWLHLD 244 (337)
T ss_pred ---c-cCCCceEEEec-cHHHHHHHhccC-CceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehHHHH
Confidence 1 24568888887 999888888764 36899999998887777654 33334567777899999987654332
Q ss_pred C--CCCCccEEEEcCCC------CCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 196 V--PEGTYDAVIVDSSD------PIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 196 ~--~~~~yDvIi~D~~~------p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
. ...+||-++.|..+ |..+... -.|..+.+ |+|+|-+..+.
T Consensus 245 ~i~e~r~~~~~~f~~t~ya~ttvPTypsg~----igf~l~s~-~~~~~~~~~p~ 293 (337)
T KOG1562|consen 245 YIKEGRSFCYVIFDLTAYAITTVPTYPSGR----IGFMLCSK-LKPDGKYKTPG 293 (337)
T ss_pred HHHHHHHhHHHhcCccceeeecCCCCccce----EEEEEecc-cCCCCCccCCC
Confidence 1 12445555555432 2222111 12233444 88999888765
No 234
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.32 E-value=0.00085 Score=60.80 Aligned_cols=101 Identities=21% Similarity=0.298 Sum_probs=71.5
Q ss_pred EEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEEEcCC
Q 019187 130 VLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSS 209 (345)
Q Consensus 130 VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi~D~~ 209 (345)
|.||||-=|.++.+|++...+.+++++|+.+.-++.|+++.... ++. .+++++.+||.+.+.. .+..|+|++...
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~--~l~-~~i~~rlgdGL~~l~~--~e~~d~ivIAGM 75 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKY--GLE-DRIEVRLGDGLEVLKP--GEDVDTIVIAGM 75 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHT--T-T-TTEEEEE-SGGGG--G--GG---EEEEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc--CCc-ccEEEEECCcccccCC--CCCCCEEEEecC
Confidence 68999999999999999877789999999999999999988764 333 5899999999998763 344688886432
Q ss_pred CCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 210 DPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 210 ~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
- ..+ ..++++.....++..-.|++|.
T Consensus 76 G-----G~l-I~~ILe~~~~~~~~~~~lILqP 101 (205)
T PF04816_consen 76 G-----GEL-IIEILEAGPEKLSSAKRLILQP 101 (205)
T ss_dssp ------HHH-HHHHHHHTGGGGTT--EEEEEE
T ss_pred C-----HHH-HHHHHHhhHHHhccCCeEEEeC
Confidence 1 111 3467777777777777899984
No 235
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.31 E-value=0.0014 Score=63.60 Aligned_cols=102 Identities=22% Similarity=0.325 Sum_probs=83.4
Q ss_pred CceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEEE
Q 019187 127 PKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIV 206 (345)
Q Consensus 127 ~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi~ 206 (345)
+++|||-=+|+|.=+.-.+...+..+|++-||+|..+++.++++..+ ......++..|+-.++.+. ...||+|=+
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N----~~~~~~v~n~DAN~lm~~~-~~~fd~IDi 127 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLN----SGEDAEVINKDANALLHEL-HRAFDVIDI 127 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhc----CcccceeecchHHHHHHhc-CCCccEEec
Confidence 78999999999997777666544558999999999999999998764 2345667779999998865 588999999
Q ss_pred cCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 207 DSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 207 D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
|++-. | .+|++...+.++.||++.+.+
T Consensus 128 DPFGS--P------aPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 128 DPFGS--P------APFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred CCCCC--C------chHHHHHHHHhhcCCEEEEEe
Confidence 87642 1 369999999999999998876
No 236
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.30 E-value=0.0016 Score=63.16 Aligned_cols=87 Identities=18% Similarity=0.258 Sum_probs=65.6
Q ss_pred CCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
....+|||||+++|+.+..++++. .+|++||..+..-. + .++++|+.+.+|+..+... .+.+|+|
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG--~~V~AVD~g~l~~~-----L------~~~~~V~h~~~d~fr~~p~--~~~vDwv 274 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRG--MFVTAVDNGPMAQS-----L------MDTGQVEHLRADGFKFRPP--RKNVDWL 274 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcC--CEEEEEechhcCHh-----h------hCCCCEEEEeccCcccCCC--CCCCCEE
Confidence 356799999999999999999983 49999996552211 1 2578999999999998653 5789999
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccCCC
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALRPG 234 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~Lkpg 234 (345)
++|.... | ....+.+.+.|..|
T Consensus 275 VcDmve~--P------~rva~lm~~Wl~~g 296 (357)
T PRK11760 275 VCDMVEK--P------ARVAELMAQWLVNG 296 (357)
T ss_pred EEecccC--H------HHHHHHHHHHHhcC
Confidence 9998752 2 34566677777554
No 237
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.29 E-value=0.0014 Score=64.23 Aligned_cols=108 Identities=16% Similarity=0.145 Sum_probs=77.0
Q ss_pred ceEEEEeccchHHHHHHHhcCC-----Cc----------------------------------EEEEEECCHHHHHHHHh
Q 019187 128 KKVLVIGGGDGGVLREVSRHSS-----VE----------------------------------KIDICEIDKMVVDVSKQ 168 (345)
Q Consensus 128 ~~VL~IG~G~G~~~~~ll~~~~-----~~----------------------------------~V~~VEid~~vi~~ar~ 168 (345)
...+|-=||+|.++.|.+-... .. .+.++|||+.+++.|+.
T Consensus 193 ~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~ 272 (381)
T COG0116 193 EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKA 272 (381)
T ss_pred CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHH
Confidence 5799999999999999765421 11 37799999999999999
Q ss_pred cccccccCCCCCCEEEEEechHhHHhhCCCCCccEEEEcCCCCCCCc-----cccCcHHHHHHHHhccCCCcEEEEec
Q 019187 169 FFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPA-----QELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 169 ~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi~D~~~p~~~~-----~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
+.... +.. ..+++..+|+..+-.. -+.+|+||++++-..... ..||. +|-+.+++.++--+.+++.+
T Consensus 273 NA~~A--Gv~-d~I~f~~~d~~~l~~~--~~~~gvvI~NPPYGeRlg~~~~v~~LY~-~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 273 NARAA--GVG-DLIEFKQADATDLKEP--LEEYGVVISNPPYGERLGSEALVAKLYR-EFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred HHHhc--CCC-ceEEEEEcchhhCCCC--CCcCCEEEeCCCcchhcCChhhHHHHHH-HHHHHHHHHhcCCceEEEEc
Confidence 87653 333 4799999998776432 278999998876432111 12333 56667778888777777754
No 238
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.26 E-value=0.0022 Score=58.00 Aligned_cols=117 Identities=26% Similarity=0.275 Sum_probs=64.7
Q ss_pred chhHHHHHHHhcccccCCCCceEEEEeccchHHHHHHHh---cC-CCcEEEEEECCHHHH-HHHHhcccccccCCCCCCE
Q 019187 108 DECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSR---HS-SVEKIDICEIDKMVV-DVSKQFFPDVAVGFEDPRV 182 (345)
Q Consensus 108 de~~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~ll~---~~-~~~~V~~VEid~~vi-~~ar~~~~~~~~~~~~~rv 182 (345)
|-..|+|++-.+ +|+.|+++|.-.|+.+...+. .. +..+|.+||||-.-. ..+.+.-| -.+|+
T Consensus 20 Dm~~~qeli~~~------kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp------~~~rI 87 (206)
T PF04989_consen 20 DMVAYQELIWEL------KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHP------MSPRI 87 (206)
T ss_dssp HHHHHHHHHHHH--------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----------TTE
T ss_pred HHHHHHHHHHHh------CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhcc------ccCce
Confidence 567888877553 789999999998888877654 22 557999999975432 23333222 23799
Q ss_pred EEEEechHhH--Hhh---C-CCCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 183 TLHIGDGVAF--LKA---V-PEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 183 ~v~~~D~~~~--l~~---~-~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
+++.||..+- +.. . ......+||.|+...... ...-++.....+++|+.+|+..
T Consensus 88 ~~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs~H~~~h-----vl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 88 TFIQGDSIDPEIVDQVRELASPPHPVLVILDSSHTHEH-----VLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp EEEES-SSSTHHHHTSGSS----SSEEEEESS----SS-----HHHHHHHHHHT--TT-EEEETS
T ss_pred EEEECCCCCHHHHHHHHHhhccCCceEEEECCCccHHH-----HHHHHHHhCccCCCCCEEEEEe
Confidence 9999998532 222 1 124566888898743222 2345677889999999999854
No 239
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.08 E-value=0.0036 Score=60.03 Aligned_cols=78 Identities=17% Similarity=0.181 Sum_probs=62.9
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhC---CCCCcc
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV---PEGTYD 202 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~---~~~~yD 202 (345)
....++|.=+|.|+-+..+++..+..+|+++|.|+.+++.+++.+... ..|++++.++..++.+.. ..+++|
T Consensus 20 ~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~-----~~R~~~i~~nF~~l~~~l~~~~~~~vD 94 (305)
T TIGR00006 20 PDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF-----EGRVVLIHDNFANFFEHLDELLVTKID 94 (305)
T ss_pred CCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc-----CCcEEEEeCCHHHHHHHHHhcCCCccc
Confidence 346899999999999999998743479999999999999999987543 358999999987764322 236799
Q ss_pred EEEEcC
Q 019187 203 AVIVDS 208 (345)
Q Consensus 203 vIi~D~ 208 (345)
.|++|+
T Consensus 95 gIl~DL 100 (305)
T TIGR00006 95 GILVDL 100 (305)
T ss_pred EEEEec
Confidence 999975
No 240
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.04 E-value=0.0067 Score=48.46 Aligned_cols=102 Identities=18% Similarity=0.227 Sum_probs=65.3
Q ss_pred EEEEeccchHHHHHHHhcCCC-cEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhH-HhhCCC-CCccEEEE
Q 019187 130 VLVIGGGDGGVLREVSRHSSV-EKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAF-LKAVPE-GTYDAVIV 206 (345)
Q Consensus 130 VL~IG~G~G~~~~~ll~~~~~-~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~-l~~~~~-~~yDvIi~ 206 (345)
+|++|||.|... .+.+.... ..++++|+++.+++.++...... ....+.+..+|.... +. ... ..||++..
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~ 125 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGA----GLGLVDFVVADALGGVLP-FEDSASFDLVIS 125 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhc----CCCceEEEEeccccCCCC-CCCCCceeEEee
Confidence 999999999876 33333221 37888999999988855543210 111167888886652 22 223 47999943
Q ss_pred cCCCCCCCccccCcHHHHHHHHhccCCCcEEEEecc
Q 019187 207 DSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAE 242 (345)
Q Consensus 207 D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~ 242 (345)
........ ....+..+.+.|+|+|.++....
T Consensus 126 ~~~~~~~~-----~~~~~~~~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 126 LLVLHLLP-----PAKALRELLRVLKPGGRLVLSDL 156 (257)
T ss_pred eeehhcCC-----HHHHHHHHHHhcCCCcEEEEEec
Confidence 22211111 35789999999999999887653
No 241
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.04 E-value=0.0025 Score=60.05 Aligned_cols=110 Identities=17% Similarity=0.216 Sum_probs=67.0
Q ss_pred CCceEEEEeccchH----HHHHHHhcCC-----CcEEEEEECCHHHHHHHHhc-cc-ccc-cCC------------CC--
Q 019187 126 NPKKVLVIGGGDGG----VLREVSRHSS-----VEKIDICEIDKMVVDVSKQF-FP-DVA-VGF------------ED-- 179 (345)
Q Consensus 126 ~~~~VL~IG~G~G~----~~~~ll~~~~-----~~~V~~VEid~~vi~~ar~~-~~-~~~-~~~------------~~-- 179 (345)
++-||.-.||++|. ++..++++.+ .-+|++.|||..+++.|+.- .+ ... .+. .+
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 46799999999996 4444444432 46899999999999999862 22 100 000 11
Q ss_pred --------CCEEEEEechHhHHhhCCCCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEE
Q 019187 180 --------PRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVST 239 (345)
Q Consensus 180 --------~rv~v~~~D~~~~l~~~~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~ 239 (345)
..|.+...|...--. ..+.||+|+|--- ...-..-...+.++..+..|+|||+|++
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~--~~~~fD~IfCRNV--LIYFd~~~q~~il~~f~~~L~~gG~Lfl 239 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSP--FLGKFDLIFCRNV--LIYFDEETQERILRRFADSLKPGGLLFL 239 (268)
T ss_pred EEEChHHhcccEEeecCCCCCcc--ccCCCCEEEEcce--EEeeCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 134444444322110 2567999997210 0000001136789999999999999987
No 242
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.03 E-value=0.0017 Score=54.52 Aligned_cols=55 Identities=15% Similarity=0.074 Sum_probs=44.8
Q ss_pred EEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEec
Q 019187 130 VLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGD 188 (345)
Q Consensus 130 VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D 188 (345)
|||||||.|..+..+++..+..+|+++|.++.+.+.+++++... + -++++++...
T Consensus 2 vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n--~--~~~v~~~~~a 56 (143)
T TIGR01444 2 VIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLN--N--LPNVVLLNAA 56 (143)
T ss_pred EEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHc--C--CCcEEEEEee
Confidence 79999999999999988765568999999999999999987643 1 1357776655
No 243
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.03 E-value=0.0089 Score=57.77 Aligned_cols=111 Identities=13% Similarity=0.059 Sum_probs=72.1
Q ss_pred CCceEEEEeccchHHHHHHHhcC----CCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEE--EEechHhH---HhhC
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHS----SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTL--HIGDGVAF---LKAV 196 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~----~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v--~~~D~~~~---l~~~ 196 (345)
....++++|||+|.=++.+++.. ....++.|||+...++.+.+.+..- .-|.+++ +++|..+- +...
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~----~~p~l~v~~l~gdy~~~l~~l~~~ 151 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLG----NFSHVRCAGLLGTYDDGLAWLKRP 151 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhc----cCCCeEEEEEEecHHHHHhhcccc
Confidence 44589999999999777665532 2357999999999999998887621 2355665 77776544 4321
Q ss_pred -CCCCccEEEEcCCCCCCCccccCcHHHHHHHHh-ccCCCcEEEEec
Q 019187 197 -PEGTYDAVIVDSSDPIGPAQELFEKPFFESVAK-ALRPGGVVSTQA 241 (345)
Q Consensus 197 -~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r-~LkpgGvlv~~~ 241 (345)
......+|+.=.+ .++.....-...|++.+++ .|+|||.|++-.
T Consensus 152 ~~~~~~r~~~flGS-siGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 152 ENRSRPTTILWLGS-SIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred cccCCccEEEEeCc-cccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 1233566664221 1121111113589999999 999999998844
No 244
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.02 E-value=0.0029 Score=63.82 Aligned_cols=122 Identities=14% Similarity=0.151 Sum_probs=82.2
Q ss_pred CCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCC---CCc
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPE---GTY 201 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~---~~y 201 (345)
+..+-+||+.||+|.++..++++ +.+|.+||++++.++-|+++...+ +-.+.+++++-+.+-+..... +.=
T Consensus 382 ~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~N----gisNa~Fi~gqaE~~~~sl~~~~~~~~ 455 (534)
T KOG2187|consen 382 PADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQIN----GISNATFIVGQAEDLFPSLLTPCCDSE 455 (534)
T ss_pred CCCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhc----CccceeeeecchhhccchhcccCCCCC
Confidence 34478999999999999999988 679999999999999999987665 335789999966665443311 234
Q ss_pred c-EEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEeccchhhhhhHHHHHHHHHHhhc
Q 019187 202 D-AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIF 262 (345)
Q Consensus 202 D-vIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s~~~~~~~~~~i~~~l~~~F 262 (345)
+ ++|+|.+..... ..+++.+.+.-++-=++.+.+ ++.. ..+.+...|+..+
T Consensus 456 ~~v~iiDPpR~Glh------~~~ik~l~~~~~~~rlvyvSC-n~~t---~ar~v~~lc~~~~ 507 (534)
T KOG2187|consen 456 TLVAIIDPPRKGLH------MKVIKALRAYKNPRRLVYVSC-NPHT---AARNVIDLCSSPK 507 (534)
T ss_pred ceEEEECCCccccc------HHHHHHHHhccCccceEEEEc-CHHH---hhhhHHHhhcCcc
Confidence 5 677787664322 456666666555655555433 3322 1344555555444
No 245
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.99 E-value=0.0064 Score=57.51 Aligned_cols=47 Identities=19% Similarity=0.392 Sum_probs=38.9
Q ss_pred CCceEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhcccc
Q 019187 126 NPKKVLVIGGGDGGVLREVSRH-SSVEKIDICEIDKMVVDVSKQFFPD 172 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~-~~~~~V~~VEid~~vi~~ar~~~~~ 172 (345)
.|++|||+|+|.|..+..+... +...++++||.++.++++++.-+..
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~ 80 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRA 80 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhc
Confidence 5889999999999877666554 3477899999999999999986654
No 246
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=96.96 E-value=0.003 Score=56.69 Aligned_cols=113 Identities=22% Similarity=0.271 Sum_probs=84.7
Q ss_pred ceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccc----cCCCCCCEEEEEechHhHHhhC-CCCCcc
Q 019187 128 KKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVA----VGFEDPRVTLHIGDGVAFLKAV-PEGTYD 202 (345)
Q Consensus 128 ~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~----~~~~~~rv~v~~~D~~~~l~~~-~~~~yD 202 (345)
-...|||||-|+++.+++-..+..-|.+.||--.|.+-.++...... .+. -+++.+...++..|+.+. ..++-+
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~-~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQ-YPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccc-cccceeeeccchhhccchhhhcccc
Confidence 36899999999999999988888899999999999998887654432 122 467889999999998764 234444
Q ss_pred EEEEcCCCCCC----CccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 203 AVIVDSSDPIG----PAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 203 vIi~D~~~p~~----~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
-++.-.++|.- ....+.+...+....-+|++||++.+..
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 45544556531 2345566778888889999999998754
No 247
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=96.89 E-value=0.00047 Score=62.21 Aligned_cols=103 Identities=17% Similarity=0.293 Sum_probs=55.7
Q ss_pred CCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
++...|.|+|||++.++..+-.. -+|...|+-. .+++ ++..|....- .+++..|++
T Consensus 71 ~~~~viaD~GCGdA~la~~~~~~---~~V~SfDLva-----------------~n~~--Vtacdia~vP--L~~~svDv~ 126 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAVPNK---HKVHSFDLVA-----------------PNPR--VTACDIANVP--LEDESVDVA 126 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH--S------EEEEESS------------------SSTT--EEES-TTS-S----TT-EEEE
T ss_pred CCCEEEEECCCchHHHHHhcccC---ceEEEeeccC-----------------CCCC--EEEecCccCc--CCCCceeEE
Confidence 34468999999999999765322 3577777622 1233 5567764432 237889999
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEe-ccchhhhhhHHHHHHHHHH
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ-AESIWLHMHIIEDIVANCR 259 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~-~~s~~~~~~~~~~i~~~l~ 259 (345)
|+.++--... -.+|+++..|+||+||.|.+- ..|-+.+. ...++.++
T Consensus 127 VfcLSLMGTn-----~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~---~~F~~~~~ 174 (219)
T PF05148_consen 127 VFCLSLMGTN-----WPDFIREANRVLKPGGILKIAEVKSRFENV---KQFIKALK 174 (219)
T ss_dssp EEES---SS------HHHHHHHHHHHEEEEEEEEEEEEGGG-S-H---HHHHHHHH
T ss_pred EEEhhhhCCC-----cHHHHHHHHheeccCcEEEEEEecccCcCH---HHHHHHHH
Confidence 9877642211 258999999999999998763 23434333 34444444
No 248
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=96.89 E-value=0.0031 Score=59.38 Aligned_cols=112 Identities=19% Similarity=0.240 Sum_probs=75.2
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhccc------------ccc---c---------------
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFP------------DVA---V--------------- 175 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~------------~~~---~--------------- 175 (345)
...+||+=|||-|.++.++++. .-.+.+.|.|--|+=..+--+. ..+ .
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 4579999999999999999998 3489999999888554432111 100 0
Q ss_pred ------CCCCCCEEEEEechHhHHhhC-CCCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEeccch
Q 019187 176 ------GFEDPRVTLHIGDGVAFLKAV-PEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESI 244 (345)
Q Consensus 176 ------~~~~~rv~v~~~D~~~~l~~~-~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s~ 244 (345)
.-...++.+..||..++-... ..++||+|+...+- -.+..+ .++++.+.++|||||+.+ |.+..
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFI--DTA~Ni--~~Yi~tI~~lLkpgG~WI-N~GPL 204 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFI--DTAENI--IEYIETIEHLLKPGGYWI-NFGPL 204 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEe--echHHH--HHHHHHHHHHhccCCEEE-ecCCc
Confidence 001347888999976654321 14789999875331 112222 589999999999999765 55443
No 249
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.82 E-value=0.0077 Score=54.74 Aligned_cols=117 Identities=14% Similarity=0.187 Sum_probs=87.8
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
...++.||||-=+.++.++.+...+..++++|+.+.-++.|.++++.. + ..+++++..+|+..-++. +...|+|+
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~--~-l~~~i~vr~~dgl~~l~~--~d~~d~iv 90 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKN--N-LSERIDVRLGDGLAVLEL--EDEIDVIV 90 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhc--C-CcceEEEeccCCccccCc--cCCcCEEE
Confidence 445699999999999999998877899999999999999999998875 2 246999999999777752 56899998
Q ss_pred EcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEeccchhhhhhHHHHHHH
Q 019187 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVA 256 (345)
Q Consensus 206 ~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s~~~~~~~~~~i~~ 256 (345)
+..... .+ -.+++++-.+.|+.==.+++|. -.+...+++.+.
T Consensus 91 IAGMGG-----~l-I~~ILee~~~~l~~~~rlILQP---n~~~~~LR~~L~ 132 (226)
T COG2384 91 IAGMGG-----TL-IREILEEGKEKLKGVERLILQP---NIHTYELREWLS 132 (226)
T ss_pred EeCCcH-----HH-HHHHHHHhhhhhcCcceEEECC---CCCHHHHHHHHH
Confidence 754321 11 2477888888887555788874 334444444443
No 250
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.77 E-value=0.012 Score=57.58 Aligned_cols=99 Identities=20% Similarity=0.260 Sum_probs=68.2
Q ss_pred CceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHH-hhCCCCCccEE
Q 019187 127 PKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFL-KAVPEGTYDAV 204 (345)
Q Consensus 127 ~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l-~~~~~~~yDvI 204 (345)
..+|+++|+|. |.++..+++..+..+|+++|+++.-+++|++++..-. ..++.-+ |...-+ .......+|++
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~--~~~~~~~----~~~~~~~~~t~g~g~D~v 242 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADV--VVNPSED----DAGAEILELTGGRGADVV 242 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeE--eecCccc----cHHHHHHHHhCCCCCCEE
Confidence 34899999998 5555677888788999999999999999999664310 0111111 333333 22212369998
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
|--+- +...++.+.++++++|.+++-.
T Consensus 243 ie~~G----------~~~~~~~ai~~~r~gG~v~~vG 269 (350)
T COG1063 243 IEAVG----------SPPALDQALEALRPGGTVVVVG 269 (350)
T ss_pred EECCC----------CHHHHHHHHHHhcCCCEEEEEe
Confidence 84433 2467899999999999998865
No 251
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.76 E-value=0.017 Score=52.00 Aligned_cols=124 Identities=19% Similarity=0.201 Sum_probs=84.0
Q ss_pred CCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHh--hCCCCCcc
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLK--AVPEGTYD 202 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~--~~~~~~yD 202 (345)
....+||=||..+|.+..+++.--+...|.+||.++.+..-.-.-.. +.+|+-=+.+|++.--+ .. -+..|
T Consensus 75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~------~R~Ni~PIL~DA~~P~~Y~~~-Ve~VD 147 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAE------KRPNIIPILEDARKPEKYRHL-VEKVD 147 (231)
T ss_pred CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHH------hCCCceeeecccCCcHHhhhh-ccccc
Confidence 35679999999999999999987556689999999865443222111 23566677788754211 11 35689
Q ss_pred EEEEcCCCCCCCccccCcHHHHHHHHhccCCCc--EEEEeccchh---hhhhHHHHHHHHHHhh
Q 019187 203 AVIVDSSDPIGPAQELFEKPFFESVAKALRPGG--VVSTQAESIW---LHMHIIEDIVANCRQI 261 (345)
Q Consensus 203 vIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgG--vlv~~~~s~~---~~~~~~~~i~~~l~~~ 261 (345)
+|+.|...|... .=+..++..-|++|| ++++.+.|.- ...+.|++-++.+++-
T Consensus 148 viy~DVAQp~Qa------~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~ 205 (231)
T COG1889 148 VIYQDVAQPNQA------EILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEG 205 (231)
T ss_pred EEEEecCCchHH------HHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhc
Confidence 999999877532 446677788899999 5566554432 2345677666666653
No 252
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.75 E-value=0.0016 Score=56.39 Aligned_cols=138 Identities=12% Similarity=0.117 Sum_probs=77.6
Q ss_pred HHHHHhcccccCC---CCceEEEEeccchHHHH-HHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEec
Q 019187 113 QEMITHLPLCSIP---NPKKVLVIGGGDGGVLR-EVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGD 188 (345)
Q Consensus 113 ~e~l~~l~l~~~~---~~~~VL~IG~G~G~~~~-~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D 188 (345)
.|.|++..+. ++ ..++||++|+|--+++- .++...+..+|...|-+++.++-.++-...+ ....-.++.++.-+
T Consensus 14 eeala~~~l~-~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n-~~s~~tsc~vlrw~ 91 (201)
T KOG3201|consen 14 EEALAWTILR-DPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSN-MASSLTSCCVLRWL 91 (201)
T ss_pred HHHHHHHHHh-chhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcc-cccccceehhhHHH
Confidence 3556554433 22 25799999999655544 4555666789999999999998887753322 01111233322222
Q ss_pred hHhHHhhCCCCCccEEEE-cCCCCCCCccccCcHHHHHHHHhccCCCcEEEEeccchhhhhhHHHHHHHHHHh
Q 019187 189 GVAFLKAVPEGTYDAVIV-DSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQ 260 (345)
Q Consensus 189 ~~~~l~~~~~~~yDvIi~-D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s~~~~~~~~~~i~~~l~~ 260 (345)
-.......+..+||+|++ |...- .-+-....+.+++.|+|.|.-++-+ |- +-+.++.+.+.+..
T Consensus 92 ~~~aqsq~eq~tFDiIlaADClFf-----dE~h~sLvdtIk~lL~p~g~Al~fs--PR-Rg~sL~kF~de~~~ 156 (201)
T KOG3201|consen 92 IWGAQSQQEQHTFDIILAADCLFF-----DEHHESLVDTIKSLLRPSGRALLFS--PR-RGQSLQKFLDEVGT 156 (201)
T ss_pred HhhhHHHHhhCcccEEEeccchhH-----HHHHHHHHHHHHHHhCcccceeEec--Cc-ccchHHHHHHHHHh
Confidence 111111112468999996 33211 1123467788899999999866643 22 22344444444443
No 253
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.70 E-value=0.0019 Score=59.56 Aligned_cols=82 Identities=22% Similarity=0.231 Sum_probs=51.5
Q ss_pred ceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCC-----CCCEEEEEechHhHHhhCCCCCcc
Q 019187 128 KKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFE-----DPRVTLHIGDGVAFLKAVPEGTYD 202 (345)
Q Consensus 128 ~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~-----~~rv~v~~~D~~~~l~~~~~~~yD 202 (345)
.+|||.-+|-|.=+.-++.. ..+|+++|-+|.+..+.+.-+.......+ -.|++++.+|..+|++ .+.++||
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~-~~~~s~D 153 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR-QPDNSFD 153 (234)
T ss_dssp --EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC-CHSS--S
T ss_pred CEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh-hcCCCCC
Confidence 48999999999988887765 35899999999998887754433321111 1389999999999998 4478999
Q ss_pred EEEEcCCCCC
Q 019187 203 AVIVDSSDPI 212 (345)
Q Consensus 203 vIi~D~~~p~ 212 (345)
+|.+|+..|.
T Consensus 154 VVY~DPMFp~ 163 (234)
T PF04445_consen 154 VVYFDPMFPE 163 (234)
T ss_dssp EEEE--S---
T ss_pred EEEECCCCCC
Confidence 9999987664
No 254
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=96.64 E-value=0.0008 Score=60.48 Aligned_cols=93 Identities=19% Similarity=0.298 Sum_probs=65.4
Q ss_pred CCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
..|.++||||.|+|.++..++-+ .++|.+.|++..|....++. +.+++- ..+|++. +=+||+|
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~--feevyATElS~tMr~rL~kk-----------~ynVl~--~~ew~~t--~~k~dli 173 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPT--FEEVYATELSWTMRDRLKKK-----------NYNVLT--EIEWLQT--DVKLDLI 173 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcch--HHHHHHHHhhHHHHHHHhhc-----------CCceee--ehhhhhc--CceeehH
Confidence 35789999999999999988866 56899999999998877652 122221 2456653 5679999
Q ss_pred EE-cCCCCCCCccccCcHHHHHHHHhccCC-CcEEEE
Q 019187 205 IV-DSSDPIGPAQELFEKPFFESVAKALRP-GGVVST 239 (345)
Q Consensus 205 i~-D~~~p~~~~~~l~t~ef~~~v~r~Lkp-gGvlv~ 239 (345)
.| +.-|.... .-..++.+..+|+| +|.+++
T Consensus 174 ~clNlLDRc~~-----p~kLL~Di~~vl~psngrviv 205 (288)
T KOG3987|consen 174 LCLNLLDRCFD-----PFKLLEDIHLVLAPSNGRVIV 205 (288)
T ss_pred HHHHHHHhhcC-----hHHHHHHHHHHhccCCCcEEE
Confidence 86 22111111 13678999999999 887665
No 255
>PRK11524 putative methyltransferase; Provisional
Probab=96.58 E-value=0.0099 Score=56.41 Aligned_cols=64 Identities=19% Similarity=0.330 Sum_probs=47.7
Q ss_pred CCCCEEEEEechHhHHhhCCCCCccEEEEcCCCCCCC----c-c----c---cCcHHHHHHHHhccCCCcEEEEec
Q 019187 178 EDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGP----A-Q----E---LFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 178 ~~~rv~v~~~D~~~~l~~~~~~~yDvIi~D~~~p~~~----~-~----~---l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
.....+++++|+.++++..+++++|+|++|++-..+. . . . -+..+++..+.++|||||.+++..
T Consensus 5 ~~~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 5 GNEAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred cCCCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 3456689999999999877778999999998643211 0 0 0 112578899999999999999864
No 256
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.49 E-value=0.0045 Score=55.30 Aligned_cols=97 Identities=15% Similarity=0.182 Sum_probs=68.2
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
..++|||+|.|+|..+...++. +...|+..|++|-.+...+-+...+ .-.+.+...|..- .+..||+|+
T Consensus 79 rgkrVLd~gagsgLvaIAaa~a-GA~~v~a~d~~P~~~~ai~lNa~an-----gv~i~~~~~d~~g-----~~~~~Dl~L 147 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARA-GAAEVVAADIDPWLEQAIRLNAAAN-----GVSILFTHADLIG-----SPPAFDLLL 147 (218)
T ss_pred ccceeeecccccChHHHHHHHh-hhHHHHhcCCChHHHHHhhcchhhc-----cceeEEeeccccC-----CCcceeEEE
Confidence 4689999999999999988887 4678999999998888877765543 3456777777433 267899999
Q ss_pred E-cCCCCCCCccccCcHHHHHHHHhccCCCcEEEE
Q 019187 206 V-DSSDPIGPAQELFEKPFFESVAKALRPGGVVST 239 (345)
Q Consensus 206 ~-D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~ 239 (345)
. |.+..... -...++ +++.|+..|..++
T Consensus 148 agDlfy~~~~-----a~~l~~-~~~~l~~~g~~vl 176 (218)
T COG3897 148 AGDLFYNHTE-----ADRLIP-WKDRLAEAGAAVL 176 (218)
T ss_pred eeceecCchH-----HHHHHH-HHHHHHhCCCEEE
Confidence 5 44321111 123344 6777777776665
No 257
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.47 E-value=0.0093 Score=57.23 Aligned_cols=88 Identities=16% Similarity=0.165 Sum_probs=60.8
Q ss_pred HHHHHhcccccCCCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhH
Q 019187 113 QEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAF 192 (345)
Q Consensus 113 ~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~ 192 (345)
.|.+.++. ......++|.-.|.|+-+..+++..+..+++++|.|+.+++.+++.+... ..|+.++.++..++
T Consensus 10 ~Evl~~L~---~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~-----~~r~~~~~~~F~~l 81 (310)
T PF01795_consen 10 KEVLEALN---PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF-----DDRFIFIHGNFSNL 81 (310)
T ss_dssp HHHHHHHT-----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC-----CTTEEEEES-GGGH
T ss_pred HHHHHhhC---cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc-----cceEEEEeccHHHH
Confidence 45555543 23456889999999999999998644489999999999999999988643 56999999886554
Q ss_pred ---HhhC-CCCCccEEEEcC
Q 019187 193 ---LKAV-PEGTYDAVIVDS 208 (345)
Q Consensus 193 ---l~~~-~~~~yDvIi~D~ 208 (345)
+... ...++|.|++|+
T Consensus 82 ~~~l~~~~~~~~~dgiL~DL 101 (310)
T PF01795_consen 82 DEYLKELNGINKVDGILFDL 101 (310)
T ss_dssp HHHHHHTTTTS-EEEEEEE-
T ss_pred HHHHHHccCCCccCEEEEcc
Confidence 4433 346899999986
No 258
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.42 E-value=0.095 Score=49.51 Aligned_cols=148 Identities=16% Similarity=0.145 Sum_probs=87.4
Q ss_pred eEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEEEcC
Q 019187 129 KVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDS 208 (345)
Q Consensus 129 ~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi~D~ 208 (345)
+|+++-||.|++...+.+. +...+.++|+|+..++..+.+++.. ++++|..++....-...+|+|+.+.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G~~~v~a~e~~~~a~~~~~~N~~~~----------~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-GFEIVAANEIDKSAAETYEANFPNK----------LIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHc-CCEEEEEEeCCHHHHHHHHHhCCCC----------CccCccccCchhhcCCCCCEEEeCC
Confidence 6899999999998877665 4677899999999999999988631 5567766654321035699999877
Q ss_pred CCCCC-----------CccccCcHHHHHHHHhccCCCcEEEEeccchhh--hhhHHHHHHHHHHhhcCCcceEEEEEEee
Q 019187 209 SDPIG-----------PAQELFEKPFFESVAKALRPGGVVSTQAESIWL--HMHIIEDIVANCRQIFKGSVNYAWTTVPT 275 (345)
Q Consensus 209 ~~p~~-----------~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s~~~--~~~~~~~i~~~l~~~F~~~v~~~~~~vP~ 275 (345)
+.... +...|+ .++++ +.+.++|.=+++=|...... ....+..+++.+++. ...+.+.......
T Consensus 71 PCq~fS~ag~~~~~~d~r~~L~-~~~~~-~i~~~~P~~~v~ENV~g~~~~~~~~~~~~i~~~l~~~-GY~~~~~~l~a~~ 147 (275)
T cd00315 71 PCQPFSIAGKRKGFEDTRGTLF-FEIIR-ILKEKKPKYFLLENVKGLLTHDNGNTLKVILNTLEEL-GYNVYWKLLNASD 147 (275)
T ss_pred CChhhhHHhhcCCCCCchHHHH-HHHHH-HHHhcCCCEEEEEcCcchhccCchHHHHHHHHHHHhC-CcEEEEEEEEHHH
Confidence 64211 001121 24444 44456887666555533222 134566666666543 1122222222223
Q ss_pred cCC---CcEEEEEEecCC
Q 019187 276 YPS---GVIGFMLCSTEG 290 (345)
Q Consensus 276 y~~---g~w~~~~ask~~ 290 (345)
|.. -.-.|++|.++.
T Consensus 148 ~GvPQ~R~R~~~ia~~~~ 165 (275)
T cd00315 148 YGVPQNRERVFIIGIRKD 165 (275)
T ss_pred cCCCCCCcEEEEEEEeCC
Confidence 311 124688888754
No 259
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.42 E-value=0.023 Score=52.29 Aligned_cols=108 Identities=19% Similarity=0.244 Sum_probs=67.8
Q ss_pred HHHHHhcccccCCCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhH
Q 019187 113 QEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAF 192 (345)
Q Consensus 113 ~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~ 192 (345)
..++.+..+ ..+.+.+||||.-||+++-.+++. +...|.+||.--.-+..- +. .+||+.++..-=..+
T Consensus 68 ~~ale~F~l--~~k~kv~LDiGsSTGGFTd~lLq~-gAk~VyavDVG~~Ql~~k---LR------~d~rV~~~E~tN~r~ 135 (245)
T COG1189 68 EKALEEFEL--DVKGKVVLDIGSSTGGFTDVLLQR-GAKHVYAVDVGYGQLHWK---LR------NDPRVIVLERTNVRY 135 (245)
T ss_pred HHHHHhcCc--CCCCCEEEEecCCCccHHHHHHHc-CCcEEEEEEccCCccCHh---Hh------cCCcEEEEecCChhh
Confidence 445666543 356789999999999999999988 578999999865433221 11 467777665433333
Q ss_pred Hhh-CCCCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEE
Q 019187 193 LKA-VPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVST 239 (345)
Q Consensus 193 l~~-~~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~ 239 (345)
+.. .-.+..|+|++|.+.-. ....+..+..+|+|+|-++.
T Consensus 136 l~~~~~~~~~d~~v~DvSFIS-------L~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 136 LTPEDFTEKPDLIVIDVSFIS-------LKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred CCHHHcccCCCeEEEEeehhh-------HHHHHHHHHHhcCCCceEEE
Confidence 321 11347899999976421 12344555555666554443
No 260
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.35 E-value=0.1 Score=46.54 Aligned_cols=140 Identities=16% Similarity=0.195 Sum_probs=78.9
Q ss_pred CCceEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEe-ch---Hh---HHhhCC
Q 019187 126 NPKKVLVIGGGDGGVLREVSRH-SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIG-DG---VA---FLKAVP 197 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~-~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~-D~---~~---~l~~~~ 197 (345)
+..+|||+|+..|....-+.+. .+...|.+|||-.- +| -+.++++.+ |. .. ..+..+
T Consensus 69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~--------~p-------~~Ga~~i~~~dvtdp~~~~ki~e~lp 133 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI--------EP-------PEGATIIQGNDVTDPETYRKIFEALP 133 (232)
T ss_pred CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec--------cC-------CCCcccccccccCCHHHHHHHHHhCC
Confidence 3569999999999998876665 36778999998321 11 123444444 32 11 222335
Q ss_pred CCCccEEEEcCCCCC-CCccccCcHHHHHHH-------HhccCCCcEEEEeccchhhhhhHHHHHHHHHHhhcCCcceEE
Q 019187 198 EGTYDAVIVDSSDPI-GPAQELFEKPFFESV-------AKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYA 269 (345)
Q Consensus 198 ~~~yDvIi~D~~~p~-~~~~~l~t~ef~~~v-------~r~LkpgGvlv~~~~s~~~~~~~~~~i~~~l~~~F~~~v~~~ 269 (345)
..+.|+|+.|..... +.. .+--...++.| ...+.|+|.++.. .|... .-..+.+.|.++|. .|.
T Consensus 134 ~r~VdvVlSDMapnaTGvr-~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK---~w~g~-e~~~l~r~l~~~f~-~Vk-- 205 (232)
T KOG4589|consen 134 NRPVDVVLSDMAPNATGVR-IRDHYRSIELCDSALLFALTLLIPNGSFVCK---LWDGS-EEALLQRRLQAVFT-NVK-- 205 (232)
T ss_pred CCcccEEEeccCCCCcCcc-hhhHHHHHHHHHHHHHHhhhhcCCCcEEEEE---EecCC-chHHHHHHHHHHhh-hcE--
Confidence 678999999986532 211 11011223333 4567899999974 34332 23345566777773 332
Q ss_pred EEEEeecCCCc--EEEEEEecC
Q 019187 270 WTTVPTYPSGV--IGFMLCSTE 289 (345)
Q Consensus 270 ~~~vP~y~~g~--w~~~~ask~ 289 (345)
..-|.-..++ -.|++|.+.
T Consensus 206 -~vKP~Asr~eS~E~y~v~~~~ 226 (232)
T KOG4589|consen 206 -KVKPDASRDESAETYLVCLNF 226 (232)
T ss_pred -eeCCccccccccceeeeeeec
Confidence 2234432222 356777654
No 261
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.35 E-value=0.01 Score=50.29 Aligned_cols=76 Identities=13% Similarity=0.192 Sum_probs=52.2
Q ss_pred CCCceEEEEeccchHHHHHHHh-----cCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCC
Q 019187 125 PNPKKVLVIGGGDGGVLREVSR-----HSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEG 199 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~-----~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~ 199 (345)
..+..|+|+|||-|.+++.++. . ...+|++||.++..++.+++........+ ..+++...++...... ..
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~ 98 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDL-EKRLSFIQGDIADESS---SD 98 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchh-hccchhhccchhhhcc---cC
Confidence 4577999999999999999988 5 35799999999999999988765542111 1345555554333211 34
Q ss_pred CccEEE
Q 019187 200 TYDAVI 205 (345)
Q Consensus 200 ~yDvIi 205 (345)
..++++
T Consensus 99 ~~~~~v 104 (141)
T PF13679_consen 99 PPDILV 104 (141)
T ss_pred CCeEEE
Confidence 455555
No 262
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.34 E-value=0.023 Score=54.00 Aligned_cols=78 Identities=21% Similarity=0.260 Sum_probs=62.5
Q ss_pred CCceEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhh---CCCCCc
Q 019187 126 NPKKVLVIGGGDGGVLREVSRH-SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKA---VPEGTY 201 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~-~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~---~~~~~y 201 (345)
...-.+|.-.|.|+-++.+++. ++..+++++|.|+.+++.|++.+..+ ++|++++.+....+... ...+++
T Consensus 23 ~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~-----~~r~~~v~~~F~~l~~~l~~~~i~~v 97 (314)
T COG0275 23 PDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF-----DGRVTLVHGNFANLAEALKELGIGKV 97 (314)
T ss_pred CCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc-----CCcEEEEeCcHHHHHHHHHhcCCCce
Confidence 3468899999999999998876 44567999999999999999988653 47999999886554332 224689
Q ss_pred cEEEEcC
Q 019187 202 DAVIVDS 208 (345)
Q Consensus 202 DvIi~D~ 208 (345)
|-|++|+
T Consensus 98 DGiL~DL 104 (314)
T COG0275 98 DGILLDL 104 (314)
T ss_pred eEEEEec
Confidence 9999975
No 263
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=96.28 E-value=0.009 Score=55.60 Aligned_cols=85 Identities=14% Similarity=0.184 Sum_probs=57.2
Q ss_pred CCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
++...|.|+|||.+-++. .. -..|...|+-+ .+-+++..|.+.. . .++++.|++
T Consensus 179 ~~~~vIaD~GCGEakiA~---~~--~~kV~SfDL~a-------------------~~~~V~~cDm~~v-P-l~d~svDva 232 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS---SE--RHKVHSFDLVA-------------------VNERVIACDMRNV-P-LEDESVDVA 232 (325)
T ss_pred cCceEEEecccchhhhhh---cc--ccceeeeeeec-------------------CCCceeeccccCC-c-CccCcccEE
Confidence 344578999999998876 22 13566666511 1234666776663 2 247899999
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEe
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~ 240 (345)
++.++--... -.+|+.+++|+|++||.+-+-
T Consensus 233 V~CLSLMgtn-----~~df~kEa~RiLk~gG~l~IA 263 (325)
T KOG3045|consen 233 VFCLSLMGTN-----LADFIKEANRILKPGGLLYIA 263 (325)
T ss_pred EeeHhhhccc-----HHHHHHHHHHHhccCceEEEE
Confidence 9876642211 258999999999999998763
No 264
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=96.27 E-value=0.039 Score=52.72 Aligned_cols=82 Identities=12% Similarity=0.154 Sum_probs=45.5
Q ss_pred CceEEEEeccchHH-HHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechH-hHHhhC--CCCCcc
Q 019187 127 PKKVLVIGGGDGGV-LREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGV-AFLKAV--PEGTYD 202 (345)
Q Consensus 127 ~~~VL~IG~G~G~~-~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~-~~l~~~--~~~~yD 202 (345)
.-++||||+|..++ ..-.++.. .-++++.|||+..++.|+++...+ ..+ ..+++++...-. ..+... +.+.||
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N-~~L-~~~I~l~~~~~~~~i~~~i~~~~e~~d 179 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERN-PNL-ESRIELRKQKNPDNIFDGIIQPNERFD 179 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT--T--TTTEEEEE--ST-SSTTTSTT--S-EE
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhc-ccc-ccceEEEEcCCccccchhhhcccceee
Confidence 45899999998765 33333443 358999999999999999987653 123 358888765322 222211 247899
Q ss_pred EEEEcCCCC
Q 019187 203 AVIVDSSDP 211 (345)
Q Consensus 203 vIi~D~~~p 211 (345)
+.+|+++..
T Consensus 180 ftmCNPPFy 188 (299)
T PF05971_consen 180 FTMCNPPFY 188 (299)
T ss_dssp EEEE-----
T ss_pred EEecCCccc
Confidence 999987643
No 265
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.23 E-value=0.031 Score=54.29 Aligned_cols=93 Identities=24% Similarity=0.280 Sum_probs=64.3
Q ss_pred CCceEEEEecc-chHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 126 NPKKVLVIGGG-DGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 126 ~~~~VL~IG~G-~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
..++|+++|.| -|..+..+++.-+ .+|++++++++-.+.|++.-.. .++..--.+.++.. .+.+|+|
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd----------~~i~~~~~~~~~~~-~~~~d~i 233 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGAD----------HVINSSDSDALEAV-KEIADAI 233 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCc----------EEEEcCCchhhHHh-HhhCcEE
Confidence 46799999977 3556777788655 7999999999999999986321 22221112233332 3349999
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
|.-.. + .-+....+.|+++|.+++-.
T Consensus 234 i~tv~-~----------~~~~~~l~~l~~~G~~v~vG 259 (339)
T COG1064 234 IDTVG-P----------ATLEPSLKALRRGGTLVLVG 259 (339)
T ss_pred EECCC-h----------hhHHHHHHHHhcCCEEEEEC
Confidence 96544 2 34677888999999999865
No 266
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.20 E-value=0.036 Score=52.04 Aligned_cols=108 Identities=18% Similarity=0.280 Sum_probs=61.1
Q ss_pred CCceEEEEeccc--hHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhcccccccCCCCCC--EEEEEechHhH---Hhh--
Q 019187 126 NPKKVLVIGGGD--GGVLREVSRH-SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPR--VTLHIGDGVAF---LKA-- 195 (345)
Q Consensus 126 ~~~~VL~IG~G~--G~~~~~ll~~-~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~r--v~v~~~D~~~~---l~~-- 195 (345)
.-+..||||||- -....++++. .+..+|+-||+||.++..++..+.. +++ ..++.+|.++- +..
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~------~~~g~t~~v~aD~r~p~~iL~~p~ 141 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLAD------NPRGRTAYVQADLRDPEAILAHPE 141 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-------TTSEEEEEE--TT-HHHHHCSHH
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcC------CCCccEEEEeCCCCCHHHHhcCHH
Confidence 467899999995 3367777763 4568999999999999999988764 345 89999998753 221
Q ss_pred C-----CCCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 196 V-----PEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 196 ~-----~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
. -++..-++++..-........ -...++.++..|.||..|++.-
T Consensus 142 ~~~~lD~~rPVavll~~vLh~v~D~~d--p~~iv~~l~d~lapGS~L~ish 190 (267)
T PF04672_consen 142 VRGLLDFDRPVAVLLVAVLHFVPDDDD--PAGIVARLRDALAPGSYLAISH 190 (267)
T ss_dssp HHCC--TTS--EEEECT-GGGS-CGCT--HHHHHHHHHCCS-TT-EEEEEE
T ss_pred HHhcCCCCCCeeeeeeeeeccCCCccC--HHHHHHHHHHhCCCCceEEEEe
Confidence 0 012233333322111111011 2578999999999999998854
No 267
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=96.17 E-value=0.034 Score=53.68 Aligned_cols=97 Identities=15% Similarity=0.238 Sum_probs=62.0
Q ss_pred CCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
..++||++|+|. |..+..+++..+..+|++++.+++-.+.+++. ... .-+.....|..+.... .+.+|+|
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l-Ga~------~vi~~~~~~~~~~~~~--~g~~D~v 239 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM-GAD------KLVNPQNDDLDHYKAE--KGYFDVS 239 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc-CCc------EEecCCcccHHHHhcc--CCCCCEE
Confidence 357899998754 44556677776666899999999999999874 311 0011111222333322 3459988
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
+ |+.. ....++.+.++|+++|.++.-.
T Consensus 240 i-d~~G---------~~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 240 F-EVSG---------HPSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred E-ECCC---------CHHHHHHHHHHhhcCCEEEEEc
Confidence 7 3332 1246778889999999998754
No 268
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=96.16 E-value=0.011 Score=50.19 Aligned_cols=87 Identities=23% Similarity=0.404 Sum_probs=57.2
Q ss_pred EEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEEEcCC-CCCCCc----cccCcHHHHHH
Q 019187 152 KIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSS-DPIGPA----QELFEKPFFES 226 (345)
Q Consensus 152 ~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi~D~~-~p~~~~----~~l~t~ef~~~ 226 (345)
+|.+.||.++.++.+++.+... +. ..|++++.+.=....+-.+.++.|+++.++- -|.+.. ..-.|...++.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~--~~-~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~ 77 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEA--GL-EDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEA 77 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHT--T--GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhc--CC-CCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHH
Confidence 5899999999999999988764 22 2389998877555433332348999998763 232211 11225678999
Q ss_pred HHhccCCCcEEEEec
Q 019187 227 VAKALRPGGVVSTQA 241 (345)
Q Consensus 227 v~r~LkpgGvlv~~~ 241 (345)
+.++|+|||++++-.
T Consensus 78 al~lL~~gG~i~iv~ 92 (140)
T PF06962_consen 78 ALELLKPGGIITIVV 92 (140)
T ss_dssp HHHHEEEEEEEEEEE
T ss_pred HHHhhccCCEEEEEE
Confidence 999999999988754
No 269
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.12 E-value=0.028 Score=56.57 Aligned_cols=105 Identities=20% Similarity=0.272 Sum_probs=73.5
Q ss_pred eEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEEE--
Q 019187 129 KVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIV-- 206 (345)
Q Consensus 129 ~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi~-- 206 (345)
++|.+|||.-.+..++.+- +...|+.+|+|+.+++........ ..+-.++...|.....- ++++||+||.
T Consensus 51 ~~l~lGCGNS~l~e~ly~~-G~~dI~~iD~S~V~V~~m~~~~~~-----~~~~~~~~~~d~~~l~f--edESFdiVIdkG 122 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKN-GFEDITNIDSSSVVVAAMQVRNAK-----ERPEMQMVEMDMDQLVF--EDESFDIVIDKG 122 (482)
T ss_pred eeEeecCCCCHHHHHHHhc-CCCCceeccccHHHHHHHHhcccc-----CCcceEEEEecchhccC--CCcceeEEEecC
Confidence 8999999998887777665 467899999999999887764321 45677888888766433 4788999886
Q ss_pred --cCCCCCCCc--cccCcHHHHHHHHhccCCCcEEEEec
Q 019187 207 --DSSDPIGPA--QELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 207 --D~~~p~~~~--~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
|.......+ ....-...+..+.++|++||+++.-+
T Consensus 123 tlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 123 TLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred ccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence 222211111 01123457888999999999876543
No 270
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.09 E-value=0.013 Score=54.35 Aligned_cols=74 Identities=19% Similarity=0.220 Sum_probs=53.1
Q ss_pred CCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
+.|.+|+|||||--=++.-....++...+.++|||..+++....++... .++.++...|...- .+....|+.
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l-----~~~~~~~v~Dl~~~---~~~~~~Dla 175 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVL-----GVPHDARVRDLLSD---PPKEPADLA 175 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHT-----T-CEEEEEE-TTTS---HTTSEESEE
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhh-----CCCcceeEeeeecc---CCCCCcchh
Confidence 4589999999998777776666555679999999999999999987764 46788888884433 246779998
Q ss_pred EE
Q 019187 205 IV 206 (345)
Q Consensus 205 i~ 206 (345)
++
T Consensus 176 Ll 177 (251)
T PF07091_consen 176 LL 177 (251)
T ss_dssp EE
T ss_pred hH
Confidence 85
No 271
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.09 E-value=0.052 Score=55.70 Aligned_cols=109 Identities=19% Similarity=0.259 Sum_probs=64.9
Q ss_pred CCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCC--------EEEEEechH----hH
Q 019187 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPR--------VTLHIGDGV----AF 192 (345)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~r--------v~v~~~D~~----~~ 192 (345)
.+.+|+++|+|. |..+...++..+. +|+++|.+++..+.+++.=.... ..+... ++..-.|.. +.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aeslGA~~v-~i~~~e~~~~~~gya~~~s~~~~~~~~~~ 241 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESMGAEFL-ELDFEEEGGSGDGYAKVMSEEFIKAEMAL 241 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEE-EeccccccccccchhhhcchhHHHHHHHH
Confidence 478999999998 4455567777665 79999999999999988421100 000000 000111110 11
Q ss_pred HhhCCCCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 193 LKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 193 l~~~~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
+.+. -+.+|+||.-...|..+++.+ +.+.+.+.+||||+++.-+
T Consensus 242 ~~~~-~~gaDVVIetag~pg~~aP~l----it~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 242 FAEQ-AKEVDIIITTALIPGKPAPKL----ITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred HHhc-cCCCCEEEECCCCCcccCcch----HHHHHHHhcCCCCEEEEEc
Confidence 1111 146999997665544333322 2478888999999987644
No 272
>PRK13699 putative methylase; Provisional
Probab=96.03 E-value=0.011 Score=54.47 Aligned_cols=59 Identities=12% Similarity=0.314 Sum_probs=45.0
Q ss_pred EEEEEechHhHHhhCCCCCccEEEEcCCCCCCC----c----cc---cCcHHHHHHHHhccCCCcEEEEe
Q 019187 182 VTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGP----A----QE---LFEKPFFESVAKALRPGGVVSTQ 240 (345)
Q Consensus 182 v~v~~~D~~~~l~~~~~~~yDvIi~D~~~p~~~----~----~~---l~t~ef~~~v~r~LkpgGvlv~~ 240 (345)
.+++++|+.+.++..++++.|+||.|++-..+. . .. -+..+++++++|+|||||.+++.
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 368899999999988899999999998653210 0 01 12356789999999999999864
No 273
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=95.98 E-value=0.046 Score=53.32 Aligned_cols=134 Identities=13% Similarity=0.180 Sum_probs=87.7
Q ss_pred CCCceEEEEeccchHHHHHHHhc----CCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhh-----
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRH----SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKA----- 195 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~----~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~----- 195 (345)
....+|||+++..|+=+..+++. +....|++=|.|+.-+...+.-+... ..+++.+...|+..+-..
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l----~~~~~~v~~~~~~~~p~~~~~~~ 229 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRL----PSPNLLVTNHDASLFPNIYLKDG 229 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhcc----CCcceeeecccceeccccccccC
Confidence 45679999999999977776653 22237999999987666665544322 345666666665443211
Q ss_pred --CCCCCccEEEEcCCCCC-CC---cccc---------------CcHHHHHHHHhccCCCcEEEEeccc--hhhhhhHHH
Q 019187 196 --VPEGTYDAVIVDSSDPI-GP---AQEL---------------FEKPFFESVAKALRPGGVVSTQAES--IWLHMHIIE 252 (345)
Q Consensus 196 --~~~~~yDvIi~D~~~p~-~~---~~~l---------------~t~ef~~~v~r~LkpgGvlv~~~~s--~~~~~~~~~ 252 (345)
.+...||-|++|.+... +. ...+ .....+....++|++||.+|-.+.| |..+.....
T Consensus 230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaVV~ 309 (375)
T KOG2198|consen 230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAVVQ 309 (375)
T ss_pred chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHHHHH
Confidence 12357999999876421 11 0111 1245777888999999999987754 455666777
Q ss_pred HHHHHHHhhc
Q 019187 253 DIVANCRQIF 262 (345)
Q Consensus 253 ~i~~~l~~~F 262 (345)
.+++.+...|
T Consensus 310 ~~L~~~~~~~ 319 (375)
T KOG2198|consen 310 EALQKVGGAV 319 (375)
T ss_pred HHHHHhcCcc
Confidence 7777777666
No 274
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.95 E-value=0.04 Score=52.89 Aligned_cols=101 Identities=19% Similarity=0.229 Sum_probs=66.1
Q ss_pred CCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhC-CCCCccE
Q 019187 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV-PEGTYDA 203 (345)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~-~~~~yDv 203 (345)
...+||++|+|. |..+..+++..+..+|+++|+++.-+++||+ |..-.- .....-. ...+..+.++.. .+..+|+
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~~~-~~~~~~~-~~~~~~~~v~~~~g~~~~d~ 245 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGATVT-DPSSHKS-SPQELAELVEKALGKKQPDV 245 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCeEE-eeccccc-cHHHHHHHHHhhccccCCCe
Confidence 356999999998 5566667888889999999999999999999 543200 0000111 223333444432 2355898
Q ss_pred EEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEE
Q 019187 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVST 239 (345)
Q Consensus 204 Ii~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~ 239 (345)
.|-.+-. ...++....+|+.+|.+++
T Consensus 246 ~~dCsG~----------~~~~~aai~a~r~gGt~vl 271 (354)
T KOG0024|consen 246 TFDCSGA----------EVTIRAAIKATRSGGTVVL 271 (354)
T ss_pred EEEccCc----------hHHHHHHHHHhccCCEEEE
Confidence 8733321 3457778889999999655
No 275
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.85 E-value=0.011 Score=59.58 Aligned_cols=107 Identities=17% Similarity=0.236 Sum_probs=83.2
Q ss_pred CCCceEEEEeccchHHHHHHHh-cCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhC--CCCCc
Q 019187 125 PNPKKVLVIGGGDGGVLREVSR-HSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV--PEGTY 201 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~-~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~--~~~~y 201 (345)
.++-+||+.=+++|.-+...++ .+++.+|++-|.++..++..+++...+ + .+..++....|+...+-.. ....|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N--~-v~~ive~~~~DA~~lM~~~~~~~~~F 184 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELN--G-VEDIVEPHHSDANVLMYEHPMVAKFF 184 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhc--C-chhhcccccchHHHHHHhcccccccc
Confidence 3466899988888886665555 478899999999999999999987654 1 2457888999988765443 24789
Q ss_pred cEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEecc
Q 019187 202 DAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAE 242 (345)
Q Consensus 202 DvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~ 242 (345)
|+|=+|++.. ...|+....+.++.||+|++.+.
T Consensus 185 DvIDLDPyGs--------~s~FLDsAvqav~~gGLL~vT~T 217 (525)
T KOG1253|consen 185 DVIDLDPYGS--------PSPFLDSAVQAVRDGGLLCVTCT 217 (525)
T ss_pred ceEecCCCCC--------ccHHHHHHHHHhhcCCEEEEEec
Confidence 9999987642 13799999999999999988763
No 276
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=95.61 E-value=0.059 Score=53.38 Aligned_cols=131 Identities=17% Similarity=0.186 Sum_probs=91.2
Q ss_pred CCceEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRH-SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~-~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
...||||+.+..|+=+.+++.. .+...|.+-|.+..-+...+.++..+ .-.+..+.+.|+.+|-...-.++||-|
T Consensus 241 ~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rl----Gv~ntiv~n~D~~ef~~~~~~~~fDRV 316 (460)
T KOG1122|consen 241 PGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRL----GVTNTIVSNYDGREFPEKEFPGSFDRV 316 (460)
T ss_pred CCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHh----CCCceEEEccCcccccccccCccccee
Confidence 3579999999999877777664 33457999999998888888887765 345688889999988533213489999
Q ss_pred EEcCCCCC-CC---cc--------------ccCcHHHHHHHHhccCCCcEEEEeccchhhhhhHHHHHHHHHHhhc
Q 019187 205 IVDSSDPI-GP---AQ--------------ELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIF 262 (345)
Q Consensus 205 i~D~~~p~-~~---~~--------------~l~t~ef~~~v~r~LkpgGvlv~~~~s~~~~~~~~~~i~~~l~~~F 262 (345)
++|++... +. .. .-+.++.+....+.+++||+||-.++|.... .-..+++..-.-|
T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~--ENE~vV~yaL~K~ 390 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVE--ENEAVVDYALKKR 390 (460)
T ss_pred eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchh--hhHHHHHHHHHhC
Confidence 99997643 00 00 0123567888889999999999877665432 2234444443444
No 277
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=95.57 E-value=0.11 Score=47.14 Aligned_cols=126 Identities=17% Similarity=0.130 Sum_probs=73.5
Q ss_pred HHHHHHHhcccccCCCCceEEEEeccchHHHHH--HHhcCCCcEEEEEECCHHHHHHHHhccccccc-C-----------
Q 019187 111 AYQEMITHLPLCSIPNPKKVLVIGGGDGGVLRE--VSRHSSVEKIDICEIDKMVVDVSKQFFPDVAV-G----------- 176 (345)
Q Consensus 111 ~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~--ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~-~----------- 176 (345)
+|++.+.+++- ..|-.+-|-+||+|.++.- +++......|.+-|||++++++|++++..... +
T Consensus 39 i~qR~l~~l~~---~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~ 115 (246)
T PF11599_consen 39 IFQRALHYLEG---KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELREL 115 (246)
T ss_dssp HHHHHHCTSSS----S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcC---CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHH
Confidence 45555554332 4678999999999998766 45556678999999999999999998754310 0
Q ss_pred -------------------------C-CCCCEEEEEechHhHHh--hC-CCCCccEEEEcCCCCCCCc-----cccCcHH
Q 019187 177 -------------------------F-EDPRVTLHIGDGVAFLK--AV-PEGTYDAVIVDSSDPIGPA-----QELFEKP 222 (345)
Q Consensus 177 -------------------------~-~~~rv~v~~~D~~~~l~--~~-~~~~yDvIi~D~~~p~~~~-----~~l~t~e 222 (345)
- ......+...|.++.-. .. ....-|+||.|.+-..... ..--...
T Consensus 116 ~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ 195 (246)
T PF11599_consen 116 YEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQ 195 (246)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHH
T ss_pred HHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHH
Confidence 0 12236788888776422 11 1344699999987532111 1112367
Q ss_pred HHHHHHhccCCCcEEEE
Q 019187 223 FFESVAKALRPGGVVST 239 (345)
Q Consensus 223 f~~~v~r~LkpgGvlv~ 239 (345)
++..++.+|-+++++++
T Consensus 196 ml~~l~~vLp~~sVV~v 212 (246)
T PF11599_consen 196 MLNSLAPVLPERSVVAV 212 (246)
T ss_dssp HHHHHHCCS-TT-EEEE
T ss_pred HHHHHHhhCCCCcEEEE
Confidence 99999999977777777
No 278
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.53 E-value=0.11 Score=47.59 Aligned_cols=148 Identities=24% Similarity=0.309 Sum_probs=88.4
Q ss_pred CCceEEEEeccchHHHHHHHhc-----C-CCc---EEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechH------
Q 019187 126 NPKKVLVIGGGDGGVLREVSRH-----S-SVE---KIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGV------ 190 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~-----~-~~~---~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~------ 190 (345)
.-+||+||....|.....+.+. + ..+ .|++||+.+.+ | -+.|.-+.+|..
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma--------P-------I~GV~qlq~DIT~~stae 105 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA--------P-------IEGVIQLQGDITSASTAE 105 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC--------c-------cCceEEeecccCCHhHHH
Confidence 4579999999999877766553 1 222 39999997643 2 134666666652
Q ss_pred hHHhhCCCCCccEEEEcCCCCC-CCc--cccC----cHHHHHHHHhccCCCcEEEEeccchhhhhhHHHHHHHHHHhhcC
Q 019187 191 AFLKAVPEGTYDAVIVDSSDPI-GPA--QELF----EKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFK 263 (345)
Q Consensus 191 ~~l~~~~~~~yDvIi~D~~~p~-~~~--~~l~----t~ef~~~v~r~LkpgGvlv~~~~s~~~~~~~~~~i~~~l~~~F~ 263 (345)
..++....++-|+|++|..... +.. .+.. -...+.....+|+|||.||. -.+...-..-+...++..|+
T Consensus 106 ~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa----KifRg~~tslLysql~~ff~ 181 (294)
T KOG1099|consen 106 AIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA----KIFRGRDTSLLYSQLRKFFK 181 (294)
T ss_pred HHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh----hhhccCchHHHHHHHHHHhh
Confidence 2334444578999999865322 221 0000 12334555789999999996 33333444456677888885
Q ss_pred CcceEEEEEEeec--CCCcEEEEEEecCCCCCCCC
Q 019187 264 GSVNYAWTTVPTY--PSGVIGFMLCSTEGPPVDFK 296 (345)
Q Consensus 264 ~~v~~~~~~vP~y--~~g~w~~~~ask~~~~~~~~ 296 (345)
. |. ..-|.- .+..-.|++|..--+|..|.
T Consensus 182 k-v~---~~KPrsSR~sSiEaFvvC~~~~pp~g~~ 212 (294)
T KOG1099|consen 182 K-VT---CAKPRSSRNSSIEAFVVCLGYCPPEGFI 212 (294)
T ss_pred c-ee---eecCCccccccceeeeeecccCCccCCC
Confidence 4 32 223432 22345899998665555543
No 279
>PTZ00357 methyltransferase; Provisional
Probab=95.46 E-value=0.065 Score=56.11 Aligned_cols=106 Identities=17% Similarity=0.256 Sum_probs=67.4
Q ss_pred eEEEEeccchHHHHHHHhcC---C-CcEEEEEECCHHHHHHHH---hccccccc--CCCCCCEEEEEechHhHHhhC---
Q 019187 129 KVLVIGGGDGGVLREVSRHS---S-VEKIDICEIDKMVVDVSK---QFFPDVAV--GFEDPRVTLHIGDGVAFLKAV--- 196 (345)
Q Consensus 129 ~VL~IG~G~G~~~~~ll~~~---~-~~~V~~VEid~~vi~~ar---~~~~~~~~--~~~~~rv~v~~~D~~~~l~~~--- 196 (345)
.|+++|+|-|-+....++.. + ..+|.+||.++..+...+ ++...|.. ...+.+|+++..|.+.|-...
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 58999999999988876641 1 247999999955322222 23344421 011458999999999984210
Q ss_pred ----C--CCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCC----CcE
Q 019187 197 ----P--EGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRP----GGV 236 (345)
Q Consensus 197 ----~--~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~Lkp----gGv 236 (345)
+ -++.|+||..+-...+. .+ .+.|.+..+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGD-NE-LSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGD-NE-LSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhhhccccc-cc-CCHHHHHHHHHhhhhhcccccc
Confidence 0 13799999754333222 12 256888888888876 676
No 280
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.32 E-value=0.015 Score=56.20 Aligned_cols=111 Identities=23% Similarity=0.302 Sum_probs=63.9
Q ss_pred CCceEEEEeccchHHHHHHHh-cCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSR-HSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~-~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
.|+++||+|.|.|..+..+-. .|...+++++|.++.+-++.-.-.....-...+-|..=+..|-.. +. ..+.|++|
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~-lp--~ad~ytl~ 189 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLS-LP--AADLYTLA 189 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccC-CC--ccceeehh
Confidence 478999999999876665544 366788999999987665544322111000011111112222111 11 24679988
Q ss_pred EE-cCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 205 IV-DSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 205 i~-D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
|+ |---|.+....+ ...++.+...++|||.||+-.
T Consensus 190 i~~~eLl~d~~ek~i--~~~ie~lw~l~~~gg~lVivE 225 (484)
T COG5459 190 IVLDELLPDGNEKPI--QVNIERLWNLLAPGGHLVIVE 225 (484)
T ss_pred hhhhhhccccCcchH--HHHHHHHHHhccCCCeEEEEe
Confidence 84 211222322222 237888899999999988743
No 281
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=95.31 E-value=0.11 Score=47.97 Aligned_cols=123 Identities=17% Similarity=0.189 Sum_probs=80.4
Q ss_pred CCceEEEEeccchHHHHHHHhc-CCCcEEEEEECCH----HHHHHHHhcccccccCCCCCCEEEEEechHhHHhh-CCCC
Q 019187 126 NPKKVLVIGGGDGGVLREVSRH-SSVEKIDICEIDK----MVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKA-VPEG 199 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~-~~~~~V~~VEid~----~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~-~~~~ 199 (345)
...+||=||.++|.+..++..- .+..-|.+||.++ +.+.+|++. +++--+++|++.--+- ..-.
T Consensus 156 pGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR----------tNiiPIiEDArhP~KYRmlVg 225 (317)
T KOG1596|consen 156 PGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR----------TNIIPIIEDARHPAKYRMLVG 225 (317)
T ss_pred CCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc----------CCceeeeccCCCchheeeeee
Confidence 4569999999999999998875 3345788999885 455566543 4677788887643221 0124
Q ss_pred CccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEeccchh-----hhhhHHHHHHHHHHh-hcCC
Q 019187 200 TYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIW-----LHMHIIEDIVANCRQ-IFKG 264 (345)
Q Consensus 200 ~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s~~-----~~~~~~~~i~~~l~~-~F~~ 264 (345)
..|+|+.|...|... .-..-+....||+||-+++..-..+ .....|..-.+.|++ .+++
T Consensus 226 mVDvIFaDvaqpdq~------RivaLNA~~FLk~gGhfvisikancidstv~ae~vFa~Ev~klqee~lkP 290 (317)
T KOG1596|consen 226 MVDVIFADVAQPDQA------RIVALNAQYFLKNGGHFVISIKANCIDSTVFAEAVFAAEVKKLQEEQLKP 290 (317)
T ss_pred eEEEEeccCCCchhh------hhhhhhhhhhhccCCeEEEEEecccccccccHHHHHHHHHHHHHHhccCc
Confidence 689999998877533 2223344567999999888653333 334456555555653 3544
No 282
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.27 E-value=0.07 Score=48.96 Aligned_cols=106 Identities=18% Similarity=0.188 Sum_probs=67.4
Q ss_pred hhHHHHHHHhcccccCCCCceEEEEeccchHHHHH--HHhcCCCcEEEEE--ECCHHHHHHHHhcccccccCCCCCCEEE
Q 019187 109 ECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLRE--VSRHSSVEKIDIC--EIDKMVVDVSKQFFPDVAVGFEDPRVTL 184 (345)
Q Consensus 109 e~~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~--ll~~~~~~~V~~V--Eid~~vi~~ar~~~~~~~~~~~~~rv~v 184 (345)
+..|.+-.-++|.....+.++||+||||.-+.-+. +++. ..+|++| ++++++.++++ .+++++
T Consensus 7 ~~~~~~~~~~~pi~l~~~~~~VLVVGGG~VA~RK~~~Ll~~--gA~VtVVap~i~~el~~l~~-----------~~~i~~ 73 (223)
T PRK05562 7 EDIYNEENKYMFISLLSNKIKVLIIGGGKAAFIKGKTFLKK--GCYVYILSKKFSKEFLDLKK-----------YGNLKL 73 (223)
T ss_pred hHHhhccCCEeeeEEECCCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEcCCCCHHHHHHHh-----------CCCEEE
Confidence 34566656667777666788999999998665433 4444 3567766 77788776654 246777
Q ss_pred EEechHhHHhhCCCCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 185 HIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 185 ~~~D~~~~l~~~~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
+..+...- . -..+++||+...+ .+.-+.+++..+..|+++..+
T Consensus 74 ~~r~~~~~--d--l~g~~LViaATdD----------~~vN~~I~~~a~~~~~lvn~v 116 (223)
T PRK05562 74 IKGNYDKE--F--IKDKHLIVIATDD----------EKLNNKIRKHCDRLYKLYIDC 116 (223)
T ss_pred EeCCCChH--H--hCCCcEEEECCCC----------HHHHHHHHHHHHHcCCeEEEc
Confidence 76553211 1 1447888876544 355666666666667777654
No 283
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=95.25 E-value=0.38 Score=44.76 Aligned_cols=117 Identities=21% Similarity=0.312 Sum_probs=69.3
Q ss_pred EEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhC--CCCCccEEEEcC
Q 019187 131 LVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV--PEGTYDAVIVDS 208 (345)
Q Consensus 131 L~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~--~~~~yDvIi~D~ 208 (345)
|..=.|+=.+++.+++. ..+.+.+|+.+.-.+..+++|. .+.+++++..||.+-+... +.++=-+|++|+
T Consensus 62 l~~YPGSP~ia~~llR~--qDrl~l~ELHp~d~~~L~~~~~------~~~~v~v~~~DG~~~l~allPP~~rRglVLIDP 133 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLRE--QDRLVLFELHPQDFEALKKNFR------RDRRVRVHHRDGYEGLKALLPPPERRGLVLIDP 133 (245)
T ss_dssp --EEE-HHHHHHHHS-T--TSEEEEE--SHHHHHHHTTS--------TTS-EEEE-S-HHHHHHHH-S-TTS-EEEEE--
T ss_pred cCcCCCCHHHHHHhCCc--cceEEEEecCchHHHHHHHHhc------cCCccEEEeCchhhhhhhhCCCCCCCeEEEECC
Confidence 55667888888888876 5689999999999999998876 3579999999999977653 345567899997
Q ss_pred CCCCCCccccCcHHHHHHHHhccC--CCcEEEEeccchhhhhhHHHHHHHHHHhh
Q 019187 209 SDPIGPAQELFEKPFFESVAKALR--PGGVVSTQAESIWLHMHIIEDIVANCRQI 261 (345)
Q Consensus 209 ~~p~~~~~~l~t~ef~~~v~r~Lk--pgGvlv~~~~s~~~~~~~~~~i~~~l~~~ 261 (345)
+-..... | ....+.+.++++ +.|++++.- |.........+.+.+++.
T Consensus 134 pYE~~~d---y-~~v~~~l~~a~kR~~~G~~~iWY--Pi~~~~~~~~~~~~l~~~ 182 (245)
T PF04378_consen 134 PYEQKDD---Y-QRVVDALAKALKRWPTGVYAIWY--PIKDRERVDRFLRALKAL 182 (245)
T ss_dssp ---STTH---H-HHHHHHHHHHHHH-TTSEEEEEE--EESSHHHHHHHHHHHHHH
T ss_pred CCCCchH---H-HHHHHHHHHHHHhcCCcEEEEEe--ecccHHHHHHHHHHHHhc
Confidence 5432211 0 123333344444 679988764 445556667777777765
No 284
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=95.20 E-value=0.12 Score=50.46 Aligned_cols=99 Identities=15% Similarity=0.220 Sum_probs=62.4
Q ss_pred CCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
...+||++|+|. |..+..+++..+..+|++++.+++-.+.++++ .. +.-+.....|..+.+.+...+.+|+|
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~-Ga------~~~i~~~~~~~~~~i~~~~~~g~d~v 263 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL-GA------TATVNAGDPNAVEQVRELTGGGVDYA 263 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc-CC------ceEeCCCchhHHHHHHHHhCCCCCEE
Confidence 457899998754 44556677776665799999999999988764 21 10111111233333433223469988
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
+ |... ....++...+.|+++|.++...
T Consensus 264 i-d~~G---------~~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 264 F-EMAG---------SVPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred E-ECCC---------ChHHHHHHHHHHhcCCEEEEEc
Confidence 8 3321 1256778888999999998754
No 285
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.16 E-value=0.2 Score=49.39 Aligned_cols=101 Identities=20% Similarity=0.296 Sum_probs=57.6
Q ss_pred CCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
.+.+|++||+|. |..+...++..+. +|+++|.+++-.+.+...+.. .+.....+... +.+. -..+|+|
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~g~--------~v~~~~~~~~~-l~~~-l~~aDvV 234 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEFGG--------RIHTRYSNAYE-IEDA-VKRADLL 234 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcCc--------eeEeccCCHHH-HHHH-HccCCEE
Confidence 467899999884 4445555555554 799999998776666544431 12211222222 2222 2468999
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
|....-+....+.+.+.+.+ +.++++++++--+
T Consensus 235 I~a~~~~g~~~p~lit~~~l----~~mk~g~vIvDva 267 (370)
T TIGR00518 235 IGAVLIPGAKAPKLVSNSLV----AQMKPGAVIVDVA 267 (370)
T ss_pred EEccccCCCCCCcCcCHHHH----hcCCCCCEEEEEe
Confidence 97543322222345555544 4578988876533
No 286
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=95.05 E-value=0.19 Score=48.37 Aligned_cols=100 Identities=13% Similarity=0.188 Sum_probs=61.0
Q ss_pred CCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
..++||++|+|. |..+..+++..+...|++++.+++-.+.+++. .. +.-+.....+..+..+......+|.+
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~-Ga------~~~i~~~~~~~~~~~~~~~~~~~d~~ 232 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSL-GA------MQTFNSREMSAPQIQSVLRELRFDQL 232 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc-CC------ceEecCcccCHHHHHHHhcCCCCCeE
Confidence 467999998755 33455567776665688999999888888663 21 00011111121222222223468866
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
++|+... ...+....++|+++|.+++-.
T Consensus 233 v~d~~G~---------~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 233 ILETAGV---------PQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred EEECCCC---------HHHHHHHHHHhhcCCEEEEEc
Confidence 6665431 356788889999999998753
No 287
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=94.96 E-value=0.034 Score=54.66 Aligned_cols=102 Identities=16% Similarity=0.217 Sum_probs=70.3
Q ss_pred CceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEEE
Q 019187 127 PKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIV 206 (345)
Q Consensus 127 ~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi~ 206 (345)
..+++++|||-|...+++.... ...+++++.++.-+..+....... .++ .+..+++.|..+-. .++..||.+-+
T Consensus 111 ~~~~~~~~~g~~~~~~~i~~f~-~~~~~Gl~~n~~e~~~~~~~~~~~--~l~-~k~~~~~~~~~~~~--fedn~fd~v~~ 184 (364)
T KOG1269|consen 111 GSKVLDVGTGVGGPSRYIAVFK-KAGVVGLDNNAYEAFRANELAKKA--YLD-NKCNFVVADFGKMP--FEDNTFDGVRF 184 (364)
T ss_pred cccccccCcCcCchhHHHHHhc-cCCccCCCcCHHHHHHHHHHHHHH--Hhh-hhcceehhhhhcCC--CCccccCcEEE
Confidence 3489999999999999998874 467888888877666655443221 222 34455666644332 24788999875
Q ss_pred -cCCCCCCCccccCcHHHHHHHHhccCCCcEEEE
Q 019187 207 -DSSDPIGPAQELFEKPFFESVAKALRPGGVVST 239 (345)
Q Consensus 207 -D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~ 239 (345)
|....... ....|++++++++|||++++
T Consensus 185 ld~~~~~~~-----~~~~y~Ei~rv~kpGG~~i~ 213 (364)
T KOG1269|consen 185 LEVVCHAPD-----LEKVYAEIYRVLKPGGLFIV 213 (364)
T ss_pred EeecccCCc-----HHHHHHHHhcccCCCceEEe
Confidence 44332211 25789999999999999997
No 288
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=94.88 E-value=0.12 Score=54.33 Aligned_cols=162 Identities=14% Similarity=0.096 Sum_probs=86.8
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEE---EECCHHHHHHHHhcccccccCCCCCCEEEEEech-------------
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDI---CEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDG------------- 189 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~---VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~------------- 189 (345)
.++..|..|-|+|+++..+++..+..++.. .|++..+..-+.-.-|..-....+.+-+.+..|-
T Consensus 322 ~~~d~l~~GDGSGGita~lLR~~p~sr~iFNSLL~~~~~~l~Gs~P~PPsAi~~~g~~~~Rcvn~~~~W~~pSDLs~~~T 401 (675)
T PF14314_consen 322 KYRDALCGGDGSGGITACLLRMNPTSRGIFNSLLELDGSDLRGSHPSPPSAIMALGNDKSRCVNLDTCWEHPSDLSDPET 401 (675)
T ss_pred CcceeEEEecCchHHHHHHHHhCcccceeeeccccccCCCCCCCCCCCcHHHhccCcccceeecchhhhcCccccCCccH
Confidence 457889999999999999999876666653 4555444333221111100011222333333221
Q ss_pred HhHHhh---CCCCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEeccchhhhhhHHHHHHHHHHhhcCCcc
Q 019187 190 VAFLKA---VPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSV 266 (345)
Q Consensus 190 ~~~l~~---~~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s~~~~~~~~~~i~~~l~~~F~~~v 266 (345)
.+|... ...-++|+|++|+--.............-+.+.++|.++|.++.-+.-...- ..-..++..+...| ..|
T Consensus 402 W~YF~~l~~~~~~~idLiv~DmEV~d~~~~~kIe~~l~~~~~~ll~~~gtLIfKTYlt~l~-~~~~~il~~lg~~F-~~V 479 (675)
T PF14314_consen 402 WKYFVSLKKQHNLSIDLIVMDMEVRDDSIIRKIEDNLRDYVHSLLEEPGTLIFKTYLTRLL-SPDYNILDLLGRYF-KSV 479 (675)
T ss_pred HHHHHHHHhhcCCcccEEEEeceecChHHHHHHHHHHHHHHHHhcCCCcEEEEehhHhhhh-cchhhHHHHHHhhc-Cce
Confidence 122221 1246799999997532211111112234455567889999999865211111 11235788899999 456
Q ss_pred eEEEEEEeecCCCcEEEEEEecCC
Q 019187 267 NYAWTTVPTYPSGVIGFMLCSTEG 290 (345)
Q Consensus 267 ~~~~~~vP~y~~g~w~~~~ask~~ 290 (345)
..+.+..-+-.+.+ .+++|++..
T Consensus 480 ~l~qT~~SSs~TSE-VYlv~~~~~ 502 (675)
T PF14314_consen 480 ELVQTQFSSSFTSE-VYLVFQKLK 502 (675)
T ss_pred EEEECCCCCCCceE-EEEEEeccc
Confidence 55444333222223 478888653
No 289
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=94.83 E-value=0.31 Score=47.95 Aligned_cols=110 Identities=17% Similarity=0.135 Sum_probs=67.8
Q ss_pred CCCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEec-hHhHHhhC-CCCCc
Q 019187 125 PNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGD-GVAFLKAV-PEGTY 201 (345)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D-~~~~l~~~-~~~~y 201 (345)
....+||++|+|. |..+..+++..+..+|++++.+++..+.++++... ..+.....+ ..+.+... ....+
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~-------~vi~~~~~~~~~~~l~~~~~~~~~ 255 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGA-------ETINFEEVDDVVEALRELTGGRGP 255 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCc-------EEEcCCcchHHHHHHHHHcCCCCC
Confidence 3457899999887 77888888886666799999999999999886421 111222221 33333322 23469
Q ss_pred cEEEEcCCCCC-----CCc------cccCcHHHHHHHHhccCCCcEEEEec
Q 019187 202 DAVIVDSSDPI-----GPA------QELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 202 DvIi~D~~~p~-----~~~------~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
|+|+--..... +.. ..--+...++.+.++|+++|.++...
T Consensus 256 D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 256 DVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 98874321100 000 00002356788899999999998764
No 290
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=94.80 E-value=0.042 Score=51.23 Aligned_cols=113 Identities=21% Similarity=0.146 Sum_probs=80.5
Q ss_pred CceEEEEeccchHHHHHHHhcC------------CCcEEEEEECCHHHHHHHH--hcccccc------------------
Q 019187 127 PKKVLVIGGGDGGVLREVSRHS------------SVEKIDICEIDKMVVDVSK--QFFPDVA------------------ 174 (345)
Q Consensus 127 ~~~VL~IG~G~G~~~~~ll~~~------------~~~~V~~VEid~~vi~~ar--~~~~~~~------------------ 174 (345)
.-.|+++|.|+|...+.+.+.. ....++.+|.+|.....++ .+.++..
T Consensus 59 ~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~~ 138 (252)
T COG4121 59 ILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGCA 138 (252)
T ss_pred ceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchhH
Confidence 4578899999999877765532 1235778888764433322 1111110
Q ss_pred -cCC-CCCCEEEEEechHhHHhhCCCC---CccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 175 -VGF-EDPRVTLHIGDGVAFLKAVPEG---TYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 175 -~~~-~~~rv~v~~~D~~~~l~~~~~~---~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
..+ ..-.+.++++|+.+.+... .. ++|+.+.|.+.|...+ .+++.+++..++++.++||.+++-+
T Consensus 139 r~~~~g~~~l~l~~gd~~~~~p~~-~~~~~~~dAwflDgFsP~kNP-~mW~~e~l~~~a~~~~~~~~l~t~s 208 (252)
T COG4121 139 AAVRHGLLLLGLVIGDAGDGIPPV-PRRRPGTDAWFLDGFRPVKNP-EMWEDELLNLMARIPYRDPTLATFA 208 (252)
T ss_pred HhhhcchheeeeeeeehhhcCCcc-cccccCccEEecCCccccCCh-hhccHHHHHHHHhhcCCCCceechH
Confidence 012 2346789999999988765 34 7999999999988766 8899999999999999999999743
No 291
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=94.80 E-value=0.28 Score=45.92 Aligned_cols=97 Identities=13% Similarity=0.120 Sum_probs=60.2
Q ss_pred CCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhC-CCCCccE
Q 019187 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV-PEGTYDA 203 (345)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~-~~~~yDv 203 (345)
..++||++|+|. |..+..+++..+..+|++++.+++-.+.++++-... .++ ..+..+.+.+. ....+|+
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~--~i~-------~~~~~~~~~~~~~~~g~d~ 190 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATA--LAE-------PEVLAERQGGLQNGRGVDV 190 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcE--ecC-------chhhHHHHHHHhCCCCCCE
Confidence 457899998754 445555777766666999999998888888742110 011 01111222221 2346998
Q ss_pred EEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 204 Ii~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
|+ |... ....++.+.+.|+++|.++...
T Consensus 191 vi-d~~G---------~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 191 AL-EFSG---------ATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred EE-ECCC---------ChHHHHHHHHHhcCCCEEEEec
Confidence 87 3321 1256778889999999998754
No 292
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=94.74 E-value=0.24 Score=50.86 Aligned_cols=106 Identities=18% Similarity=0.226 Sum_probs=60.6
Q ss_pred CCceEEEEeccch-HHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCC--------CCEEEEEechHh----H
Q 019187 126 NPKKVLVIGGGDG-GVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFED--------PRVTLHIGDGVA----F 192 (345)
Q Consensus 126 ~~~~VL~IG~G~G-~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~--------~rv~v~~~D~~~----~ 192 (345)
.+.+||++|+|.- ..+..+++..+ ..|+++|.++...+.+++ ++.....++. .-.+..-.|..+ .
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lG-A~V~v~d~~~~rle~a~~-lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~ 240 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLG-AIVRAFDTRPEVKEQVQS-MGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL 240 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHH-cCCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence 4689999999885 44455666654 469999999999998887 3321000000 001111112111 0
Q ss_pred HhhCCCCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEE
Q 019187 193 LKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVS 238 (345)
Q Consensus 193 l~~~~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv 238 (345)
+.+. -..+|+||.-.--|..+++.|.+++ +.+.+|||++++
T Consensus 241 ~~e~-~~~~DIVI~TalipG~~aP~Lit~e----mv~~MKpGsvIV 281 (511)
T TIGR00561 241 FAAQ-AKEVDIIITTALIPGKPAPKLITEE----MVDSMKAGSVIV 281 (511)
T ss_pred HHHH-hCCCCEEEECcccCCCCCCeeehHH----HHhhCCCCCEEE
Confidence 1111 3569999876644544555565554 466788887765
No 293
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=94.66 E-value=0.19 Score=47.85 Aligned_cols=87 Identities=17% Similarity=0.312 Sum_probs=57.3
Q ss_pred CCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
..++||++|+|. |..+..+++..+...|.++|.+++-++.++++.. ++ + .+. . ...+|+|
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~-----i~-~---------~~~---~-~~g~Dvv 204 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEV-----LD-P---------EKD---P-RRDYRAI 204 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccc-----cC-h---------hhc---c-CCCCCEE
Confidence 456899999654 5566777887777678888998877776654310 01 0 000 1 3468988
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
| |+.. ....++.+.+.|+++|.+++-.
T Consensus 205 i-d~~G---------~~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 205 Y-DASG---------DPSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred E-ECCC---------CHHHHHHHHHhhhcCcEEEEEe
Confidence 7 4332 1246788889999999998754
No 294
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=94.59 E-value=0.17 Score=51.83 Aligned_cols=121 Identities=21% Similarity=0.243 Sum_probs=75.8
Q ss_pred HHHHhcccccCCCCceEEEEeccchHHHHHHHhcCC----CcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEech
Q 019187 114 EMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSS----VEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDG 189 (345)
Q Consensus 114 e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~ll~~~~----~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~ 189 (345)
++|+++.. +....+|+|-.||+|+......++.. ...+.+.|+++....+|+.++-.. +.+. .+.+..+|-
T Consensus 176 ~liv~~l~--~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lh--gi~~-~~~i~~~dt 250 (489)
T COG0286 176 ELIVELLD--PEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILH--GIEG-DANIRHGDT 250 (489)
T ss_pred HHHHHHcC--CCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHh--CCCc-ccccccccc
Confidence 45555322 22345899999999998888766521 256899999999999999875432 1121 345555654
Q ss_pred HhHHhh---CCCCCccEEEEcCCCC-C--C-----------------CccccCc-HHHHHHHHhccCCCcEEEE
Q 019187 190 VAFLKA---VPEGTYDAVIVDSSDP-I--G-----------------PAQELFE-KPFFESVAKALRPGGVVST 239 (345)
Q Consensus 190 ~~~l~~---~~~~~yDvIi~D~~~p-~--~-----------------~~~~l~t-~ef~~~v~r~LkpgGvlv~ 239 (345)
..-... ...++||+|+.+++.. . . ++..--. ..|++.+...|+|||...+
T Consensus 251 l~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aai 324 (489)
T COG0286 251 LSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAI 324 (489)
T ss_pred ccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEE
Confidence 322211 1146799999876543 1 0 0000111 5799999999999885443
No 295
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=94.57 E-value=0.26 Score=47.84 Aligned_cols=99 Identities=22% Similarity=0.214 Sum_probs=62.7
Q ss_pred CCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhC-CCCCccE
Q 019187 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV-PEGTYDA 203 (345)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~-~~~~yDv 203 (345)
...+||+.|+|. |..+..+++..+..+|++++.+++-.+.+++. .. +.-+.....|..+.+.+. ....+|+
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~-Ga------~~~i~~~~~~~~~~i~~~~~~~g~d~ 248 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF-GA------THTVNSSGTDPVEAIRALTGGFGADV 248 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-CC------ceEEcCCCcCHHHHHHHHhCCCCCCE
Confidence 467999998754 44556677776666799999999988888763 21 111111223433434332 2346898
Q ss_pred EEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 204 Ii~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
|+ |... ....++...+.|+++|.+++-.
T Consensus 249 vi-d~~g---------~~~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 249 VI-DAVG---------RPETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred EE-ECCC---------CHHHHHHHHHHhccCCEEEEEC
Confidence 87 4332 1245677888999999998754
No 296
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=94.55 E-value=0.12 Score=48.80 Aligned_cols=104 Identities=16% Similarity=0.228 Sum_probs=68.3
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
..++|+.+|--+- ++..++-..-.++|.+||||+..+..-.+...+. .-.+++.+.-|.++-+.+.-.++||+++
T Consensus 152 ~gK~I~vvGDDDL-tsia~aLt~mpk~iaVvDIDERli~fi~k~aee~----g~~~ie~~~~Dlr~plpe~~~~kFDvfi 226 (354)
T COG1568 152 EGKEIFVVGDDDL-TSIALALTGMPKRIAVVDIDERLIKFIEKVAEEL----GYNNIEAFVFDLRNPLPEDLKRKFDVFI 226 (354)
T ss_pred CCCeEEEEcCchh-hHHHHHhcCCCceEEEEechHHHHHHHHHHHHHh----CccchhheeehhcccChHHHHhhCCeee
Confidence 4678999995443 3333322222479999999999999888776554 3345888888988766543368999999
Q ss_pred EcCCCCCCCccccCcHHHHHHHHhccCCC---cEEEE
Q 019187 206 VDSSDPIGPAQELFEKPFFESVAKALRPG---GVVST 239 (345)
Q Consensus 206 ~D~~~p~~~~~~l~t~ef~~~v~r~Lkpg---Gvlv~ 239 (345)
.|++.... . -+.|+..-...|+.- |.+-+
T Consensus 227 TDPpeTi~---a--lk~FlgRGI~tLkg~~~aGyfgi 258 (354)
T COG1568 227 TDPPETIK---A--LKLFLGRGIATLKGEGCAGYFGI 258 (354)
T ss_pred cCchhhHH---H--HHHHHhccHHHhcCCCccceEee
Confidence 87654211 1 134555556677766 66654
No 297
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=94.54 E-value=0.55 Score=41.71 Aligned_cols=137 Identities=19% Similarity=0.201 Sum_probs=70.2
Q ss_pred eEEEEeccchHHHHH--HHhcCCCcEEEEEECCHHHHHHHHhcccccc-cC--------CCCCCEEEEEechHhHHhhCC
Q 019187 129 KVLVIGGGDGGVLRE--VSRHSSVEKIDICEIDKMVVDVSKQFFPDVA-VG--------FEDPRVTLHIGDGVAFLKAVP 197 (345)
Q Consensus 129 ~VL~IG~G~G~~~~~--ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~-~~--------~~~~rv~v~~~D~~~~l~~~~ 197 (345)
+|-++|.|==++... +++. .-+|+++|+|++.++..++-..... .+ ....|+.+. .|....+.+
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~--G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai~~-- 76 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEK--GHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAIKD-- 76 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHT--TSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHHHH--
T ss_pred EEEEECCCcchHHHHHHHHhC--CCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhhhc--
Confidence 688899886443333 4444 3689999999999988775322110 00 112334332 344444443
Q ss_pred CCCccEEEEcCCCCCCC---ccccCcHHHHHHHHhccCCCcEEEEeccchhhhhh-HHHHHHHHHHhhcCCcceEEEEEE
Q 019187 198 EGTYDAVIVDSSDPIGP---AQELFEKPFFESVAKALRPGGVVSTQAESIWLHMH-IIEDIVANCRQIFKGSVNYAWTTV 273 (345)
Q Consensus 198 ~~~yDvIi~D~~~p~~~---~~~l~t~ef~~~v~r~LkpgGvlv~~~~s~~~~~~-~~~~i~~~l~~~F~~~v~~~~~~v 273 (345)
.|++++..+.|... +..-+-....+.+.+.|+++-++++.+..+-...+ .+..+++.... ....++..+.
T Consensus 77 ---adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~---~~~~f~la~~ 150 (185)
T PF03721_consen 77 ---ADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSG---KKEDFHLAYS 150 (185)
T ss_dssp ----SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCC---TTTCEEEEE-
T ss_pred ---cceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcc---cccCCeEEEC
Confidence 58888866654322 22223356788889999999999988766554433 44444444331 1134455777
Q ss_pred eec
Q 019187 274 PTY 276 (345)
Q Consensus 274 P~y 276 (345)
|.+
T Consensus 151 PEr 153 (185)
T PF03721_consen 151 PER 153 (185)
T ss_dssp ---
T ss_pred CCc
Confidence 876
No 298
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.50 E-value=0.37 Score=38.65 Aligned_cols=95 Identities=21% Similarity=0.262 Sum_probs=60.2
Q ss_pred EEEEeccchHHHHHHHhc--CCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHh--HHhhCCCCCccEEE
Q 019187 130 VLVIGGGDGGVLREVSRH--SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVA--FLKAVPEGTYDAVI 205 (345)
Q Consensus 130 VL~IG~G~G~~~~~ll~~--~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~--~l~~~~~~~yDvIi 205 (345)
|+++|+|. +++.+++. ....+|+++|.|++.++.+++.. +.++.+|+.+ .+++..-++.|.|+
T Consensus 1 vvI~G~g~--~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~-----------~~~i~gd~~~~~~l~~a~i~~a~~vv 67 (116)
T PF02254_consen 1 VVIIGYGR--IGREIAEQLKEGGIDVVVIDRDPERVEELREEG-----------VEVIYGDATDPEVLERAGIEKADAVV 67 (116)
T ss_dssp EEEES-SH--HHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT-----------SEEEES-TTSHHHHHHTTGGCESEEE
T ss_pred eEEEcCCH--HHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc-----------cccccccchhhhHHhhcCccccCEEE
Confidence 56777764 44544432 13458999999999988887632 5688899864 35554447899998
Q ss_pred EcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEeccch
Q 019187 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESI 244 (345)
Q Consensus 206 ~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s~ 244 (345)
+...+.. ..-..-...+.+.|...+++...+.
T Consensus 68 ~~~~~d~-------~n~~~~~~~r~~~~~~~ii~~~~~~ 99 (116)
T PF02254_consen 68 ILTDDDE-------ENLLIALLARELNPDIRIIARVNDP 99 (116)
T ss_dssp EESSSHH-------HHHHHHHHHHHHTTTSEEEEEESSH
T ss_pred EccCCHH-------HHHHHHHHHHHHCCCCeEEEEECCH
Confidence 7665421 1123334556678888888876543
No 299
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=94.38 E-value=0.084 Score=43.17 Aligned_cols=88 Identities=18% Similarity=0.219 Sum_probs=61.4
Q ss_pred cchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCC-CCCccEEEEcCCCCCCC
Q 019187 136 GDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVP-EGTYDAVIVDSSDPIGP 214 (345)
Q Consensus 136 G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~-~~~yDvIi~D~~~p~~~ 214 (345)
|-|..+..++++.+ .+|++++.++.-.+.++++-... -+.....|..+.+++.. ...+|+||-...
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga~~-------~~~~~~~~~~~~i~~~~~~~~~d~vid~~g----- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKELGADH-------VIDYSDDDFVEQIRELTGGRGVDVVIDCVG----- 67 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTTESE-------EEETTTSSHHHHHHHHTTTSSEEEEEESSS-----
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhcccc-------cccccccccccccccccccccceEEEEecC-----
Confidence 45888899999877 89999999999999999853211 01111122444555432 347998884332
Q ss_pred ccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 215 AQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 215 ~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
..+.++...++|+++|.+++-.
T Consensus 68 -----~~~~~~~~~~~l~~~G~~v~vg 89 (130)
T PF00107_consen 68 -----SGDTLQEAIKLLRPGGRIVVVG 89 (130)
T ss_dssp -----SHHHHHHHHHHEEEEEEEEEES
T ss_pred -----cHHHHHHHHHHhccCCEEEEEE
Confidence 2477899999999999999865
No 300
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=94.36 E-value=0.31 Score=46.68 Aligned_cols=97 Identities=10% Similarity=0.087 Sum_probs=61.6
Q ss_pred ceEEEEec--cchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 128 KKVLVIGG--GDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 128 ~~VL~IG~--G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
.+||+.|+ |-|..+..++++.+..+|++++-+++-.+.+++.+.. +.-+.....|..+.+.+...+.+|+|+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa------~~vi~~~~~~~~~~i~~~~~~gvd~vi 229 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGF------DAAINYKTDNVAERLRELCPEGVDVYF 229 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCC------cEEEECCCCCHHHHHHHHCCCCceEEE
Confidence 69999985 5577777788886655799999888877777664432 111111112333444433235699888
Q ss_pred EcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 206 ~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
|... . ..++.+.++|+++|.++.-.
T Consensus 230 -d~~g---~-------~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 230 -DNVG---G-------EISDTVISQMNENSHIILCG 254 (345)
T ss_pred -ECCC---c-------HHHHHHHHHhccCCEEEEEe
Confidence 4322 1 23577888999999998643
No 301
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=94.31 E-value=0.45 Score=45.50 Aligned_cols=98 Identities=19% Similarity=0.175 Sum_probs=59.8
Q ss_pred CCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhh-CCCCCccE
Q 019187 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKA-VPEGTYDA 203 (345)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~-~~~~~yDv 203 (345)
...+||++|+|. |..+..+++..+..+|++++.+++-.+.+++. .. +.-+.....+ .+-+.+ .....+|+
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~-ga------~~~i~~~~~~-~~~~~~~~~~~~~d~ 234 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL-GA------DFVINSGQDD-VQEIRELTSGAGADV 234 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-CC------CEEEcCCcch-HHHHHHHhCCCCCCE
Confidence 467999998754 33445567776665599999999888888764 21 1011111122 222222 22347998
Q ss_pred EEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 204 Ii~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
|+-... ....+....+.|+++|.++.-.
T Consensus 235 vid~~g----------~~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 235 AIECSG----------NTAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred EEECCC----------CHHHHHHHHHHhhcCCEEEEEc
Confidence 883222 1345677788999999998754
No 302
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.29 E-value=0.11 Score=49.23 Aligned_cols=103 Identities=17% Similarity=0.256 Sum_probs=61.3
Q ss_pred ceEEEEeccch--HHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccc-----cC-CCC-------CCEEEEEechHhH
Q 019187 128 KKVLVIGGGDG--GVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVA-----VG-FED-------PRVTLHIGDGVAF 192 (345)
Q Consensus 128 ~~VL~IG~G~G--~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~-----~~-~~~-------~rv~v~~~D~~~~ 192 (345)
++|.+||+|.- .++..+++. ..+|+++|.+++.++.++++..... .+ ... .+++. ..|..+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~ 78 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS--GFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKAA 78 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHHh
Confidence 57999999853 344445555 3479999999999888776432110 00 000 12222 2232222
Q ss_pred HhhCCCCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEeccc
Q 019187 193 LKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAES 243 (345)
Q Consensus 193 l~~~~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s 243 (345)
+ ..-|+||...+.... ....+++.+.+.++++.++++++.+
T Consensus 79 ~-----~~aD~Vi~avpe~~~-----~k~~~~~~l~~~~~~~~il~~~tSt 119 (288)
T PRK09260 79 V-----ADADLVIEAVPEKLE-----LKKAVFETADAHAPAECYIATNTST 119 (288)
T ss_pred h-----cCCCEEEEeccCCHH-----HHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 2 346999976654311 1346788888999998888776644
No 303
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=94.25 E-value=0.3 Score=45.22 Aligned_cols=130 Identities=16% Similarity=0.234 Sum_probs=70.2
Q ss_pred CceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccC--------------CCCCCEEEEEechH-
Q 019187 127 PKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVG--------------FEDPRVTLHIGDGV- 190 (345)
Q Consensus 127 ~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~--------------~~~~rv~v~~~D~~- 190 (345)
..+|+++|.|+ |+.+.+.+.+.++.+++.+|.|.-.+.-..+........ .=+|++++..-+.+
T Consensus 30 ~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~f~ 109 (263)
T COG1179 30 QAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAINDFI 109 (263)
T ss_pred hCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHhhh
Confidence 46899999655 899999888888999999999865443222222111000 01567776655432
Q ss_pred --hHHhhCCCCCccEEEEcCCCCCCCccccCcHHHHHHHHhc----cCCCc--------EEEEeccchhhhhhHHHHHHH
Q 019187 191 --AFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKA----LRPGG--------VVSTQAESIWLHMHIIEDIVA 256 (345)
Q Consensus 191 --~~l~~~~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~----LkpgG--------vlv~~~~s~~~~~~~~~~i~~ 256 (345)
+.+.+.-...||.|| |+.|.... ....+..|++. ...+| .+-+..-+-.....+.+.+..
T Consensus 110 t~en~~~~~~~~~DyvI-DaiD~v~~-----Kv~Li~~c~~~ki~vIss~Gag~k~DPTri~v~DiskT~~DPLa~~vR~ 183 (263)
T COG1179 110 TEENLEDLLSKGFDYVI-DAIDSVRA-----KVALIAYCRRNKIPVISSMGAGGKLDPTRIQVADISKTIQDPLAAKVRR 183 (263)
T ss_pred CHhHHHHHhcCCCCEEE-EchhhhHH-----HHHHHHHHHHcCCCEEeeccccCCCCCceEEeeechhhccCcHHHHHHH
Confidence 122222245799988 66554332 23444545432 22222 111111112233445666777
Q ss_pred HHHhhc
Q 019187 257 NCRQIF 262 (345)
Q Consensus 257 ~l~~~F 262 (345)
.||+-|
T Consensus 184 ~LRk~~ 189 (263)
T COG1179 184 KLRKRF 189 (263)
T ss_pred HHHHhc
Confidence 788776
No 304
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=94.24 E-value=0.83 Score=41.58 Aligned_cols=110 Identities=20% Similarity=0.248 Sum_probs=69.4
Q ss_pred HHHHHhcccccCCCCceEEEEeccch----HHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEec
Q 019187 113 QEMITHLPLCSIPNPKKVLVIGGGDG----GVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGD 188 (345)
Q Consensus 113 ~e~l~~l~l~~~~~~~~VL~IG~G~G----~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D 188 (345)
.|.+..++. --+.+.++++.++.| .+++.++.+....++++|-.|++-...+++.+... +.. .-++++++|
T Consensus 30 aEfISAlAA--G~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~--~~~-~~vEfvvg~ 104 (218)
T PF07279_consen 30 AEFISALAA--GWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEA--GLS-DVVEFVVGE 104 (218)
T ss_pred HHHHHHHhc--cccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhc--ccc-ccceEEecC
Confidence 355544332 246778888865543 34444444445678999999988888888877643 222 357888898
Q ss_pred h-HhHHhhCCCCCccEEEEcCCCCCCCccccCcHHHHHHHHhc--cCCCcEEEE
Q 019187 189 G-VAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKA--LRPGGVVST 239 (345)
Q Consensus 189 ~-~~~l~~~~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~--LkpgGvlv~ 239 (345)
. .+.+..+ ...|++++|+-. ++|.+.+.+. +.|.|-+++
T Consensus 105 ~~e~~~~~~--~~iDF~vVDc~~----------~d~~~~vl~~~~~~~~GaVVV 146 (218)
T PF07279_consen 105 APEEVMPGL--KGIDFVVVDCKR----------EDFAARVLRAAKLSPRGAVVV 146 (218)
T ss_pred CHHHHHhhc--cCCCEEEEeCCc----------hhHHHHHHHHhccCCCceEEE
Confidence 5 4566654 568999999863 3444344443 555676555
No 305
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=94.08 E-value=0.21 Score=42.92 Aligned_cols=144 Identities=14% Similarity=0.193 Sum_probs=77.7
Q ss_pred eEEEEeccchHHHHHH-HhcCCCcEEEEEECCHHHHHHHHhcccccc--cCCC-CCCEEEEEechHhHHhhCCCCCccEE
Q 019187 129 KVLVIGGGDGGVLREV-SRHSSVEKIDICEIDKMVVDVSKQFFPDVA--VGFE-DPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 129 ~VL~IG~G~G~~~~~l-l~~~~~~~V~~VEid~~vi~~ar~~~~~~~--~~~~-~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
+|.+||+|.++.+... +... ..+|+....+++.++..++.-.... .+.. .+++.+ ..|..+.+++ .|+|
T Consensus 1 KI~ViGaG~~G~AlA~~la~~-g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~~~-----ad~I 73 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN-GHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEALED-----ADII 73 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC-TEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHHTT------SEE
T ss_pred CEEEECcCHHHHHHHHHHHHc-CCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHhCc-----ccEE
Confidence 6889999998877663 2332 4689999999988877765322110 0001 124543 5676565543 4899
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEeccchhhhhhHHHHHHHHHHhhcCCcceEEEEEEeecCCC-----
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSG----- 279 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s~~~~~~~~~~i~~~l~~~F~~~v~~~~~~vP~y~~g----- 279 (345)
++-.+.. +-+++++.+...|+++-.++.-.... .......+-+.+++.++... +....=|++...
T Consensus 74 iiavPs~-------~~~~~~~~l~~~l~~~~~ii~~~KG~--~~~~~~~~~~~i~~~~~~~~-~~~lsGP~~A~Ei~~~~ 143 (157)
T PF01210_consen 74 IIAVPSQ-------AHREVLEQLAPYLKKGQIIISATKGF--EPGTLLLLSEVIEEILPIPR-IAVLSGPSFAEEIAEGK 143 (157)
T ss_dssp EE-S-GG-------GHHHHHHHHTTTSHTT-EEEETS-SE--ETTEEEEHHHHHHHHHSSCG-EEEEESS--HHHHHTT-
T ss_pred EecccHH-------HHHHHHHHHhhccCCCCEEEEecCCc--ccCCCccHHHHHHHHhhhcc-eEEeeCccHHHHHHcCC
Confidence 9765432 23689999999997776666544222 11111122233444453322 444555776321
Q ss_pred cEEEEEEecC
Q 019187 280 VIGFMLCSTE 289 (345)
Q Consensus 280 ~w~~~~ask~ 289 (345)
...+++||++
T Consensus 144 pt~~~~as~~ 153 (157)
T PF01210_consen 144 PTAVVIASKN 153 (157)
T ss_dssp -EEEEEEESS
T ss_pred CeEEEEEecc
Confidence 2366777764
No 306
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=94.05 E-value=0.35 Score=46.84 Aligned_cols=94 Identities=22% Similarity=0.318 Sum_probs=58.2
Q ss_pred CCceEEEEeccc-hHHHHHHHhcCCCcEEEEEEC---CHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCc
Q 019187 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEI---DKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTY 201 (345)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEi---d~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~y 201 (345)
...+||++|+|. |.++..+++..+. +|++++. ++.-.+.+++. ... .+.....|..+ .. . .+.+
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~~-Ga~-------~v~~~~~~~~~-~~-~-~~~~ 239 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEEL-GAT-------YVNSSKTPVAE-VK-L-VGEF 239 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHc-CCE-------EecCCccchhh-hh-h-cCCC
Confidence 457999999765 5566667787655 7888886 67777888763 211 01111112111 11 1 3569
Q ss_pred cEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 202 DAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 202 DvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
|+||--... ...+....+.|+++|.+++..
T Consensus 240 d~vid~~g~----------~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 240 DLIIEATGV----------PPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred CEEEECcCC----------HHHHHHHHHHccCCcEEEEEe
Confidence 988733221 246788889999999988754
No 307
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=93.97 E-value=0.1 Score=47.56 Aligned_cols=109 Identities=11% Similarity=0.126 Sum_probs=63.6
Q ss_pred CceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhH-HhhCCCCCccEEE
Q 019187 127 PKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAF-LKAVPEGTYDAVI 205 (345)
Q Consensus 127 ~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~-l~~~~~~~yDvIi 205 (345)
+-++||||+=+...... +. +.-.|+.+|+++.- + .|...|..+. +...+.++||+|.
T Consensus 52 ~lrlLEVGals~~N~~s--~~-~~fdvt~IDLns~~-----------------~--~I~qqDFm~rplp~~~~e~FdvIs 109 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS--TS-GWFDVTRIDLNSQH-----------------P--GILQQDFMERPLPKNESEKFDVIS 109 (219)
T ss_pred cceEEeecccCCCCccc--cc-CceeeEEeecCCCC-----------------C--CceeeccccCCCCCCcccceeEEE
Confidence 36999999875544433 22 23459999987621 1 2445554333 2222468899999
Q ss_pred EcCCCCCCCccccCcHHHHHHHHhccCCCcE-----EEEeccch------hhhhhHHHHHHHHH
Q 019187 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGV-----VSTQAESI------WLHMHIIEDIVANC 258 (345)
Q Consensus 206 ~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGv-----lv~~~~s~------~~~~~~~~~i~~~l 258 (345)
+-+--...|.+. -.-+.++.+.+.|+|+|. |.+-...+ +...+.+..++..+
T Consensus 110 ~SLVLNfVP~p~-~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~L 172 (219)
T PF11968_consen 110 LSLVLNFVPDPK-QRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESL 172 (219)
T ss_pred EEEEEeeCCCHH-HHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhC
Confidence 865433333211 124788999999999999 65544322 33344455555444
No 308
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=93.87 E-value=0.93 Score=42.17 Aligned_cols=118 Identities=19% Similarity=0.245 Sum_probs=83.0
Q ss_pred EEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhC--CCCCccEEEEc
Q 019187 130 VLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV--PEGTYDAVIVD 207 (345)
Q Consensus 130 VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~--~~~~yDvIi~D 207 (345)
=|..=+|+=-+++.+++- ..++..+|+.|+=..+.+++|. .+.++++..+|+..-+... +.++=-+|++|
T Consensus 92 ~l~~YpGSP~lA~~llR~--qDRl~l~ELHp~D~~~L~~~f~------~d~~vrv~~~DG~~~l~a~LPP~erRglVLID 163 (279)
T COG2961 92 GLRYYPGSPLLARQLLRE--QDRLVLTELHPSDAPLLRNNFA------GDRRVRVLRGDGFLALKAHLPPKERRGLVLID 163 (279)
T ss_pred CcccCCCCHHHHHHHcch--hceeeeeecCccHHHHHHHHhC------CCcceEEEecCcHHHHhhhCCCCCcceEEEeC
Confidence 377778998999999887 4689999999999999998886 4689999999999877653 34667889999
Q ss_pred CCCCCCCccccCcHHHHHHHHhccC--CCcEEEEeccchhhhhhHHHHHHHHHHhh
Q 019187 208 SSDPIGPAQELFEKPFFESVAKALR--PGGVVSTQAESIWLHMHIIEDIVANCRQI 261 (345)
Q Consensus 208 ~~~p~~~~~~l~t~ef~~~v~r~Lk--pgGvlv~~~~s~~~~~~~~~~i~~~l~~~ 261 (345)
++...... | ....+.+.+.++ ++|++++.- |......++.+.+.+++.
T Consensus 164 PPfE~~~e---Y-~rvv~~l~~~~kRf~~g~yaiWY--Pik~r~~~~~f~~~L~~~ 213 (279)
T COG2961 164 PPFELKDE---Y-QRVVEALAEAYKRFATGTYAIWY--PIKDRRQIRRFLRALEAL 213 (279)
T ss_pred CCcccccH---H-HHHHHHHHHHHHhhcCceEEEEE--eecchHHHHHHHHHHhhc
Confidence 76432211 0 112222333333 578888754 444566677777777754
No 309
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=93.81 E-value=0.05 Score=49.66 Aligned_cols=60 Identities=23% Similarity=0.413 Sum_probs=47.8
Q ss_pred CceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhH
Q 019187 127 PKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAF 192 (345)
Q Consensus 127 ~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~ 192 (345)
..-|.+||.|.|+++|.++.. +.++..+||+|+..+.-.+-. .+. .+.++.++.+|+..|
T Consensus 51 ~~~v~eIgPgpggitR~il~a-~~~RL~vVE~D~RFip~LQ~L-~EA----a~~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 51 NAYVYEIGPGPGGITRSILNA-DVARLLVVEKDTRFIPGLQML-SEA----APGKLRIHHGDVLRF 110 (326)
T ss_pred cceeEEecCCCCchhHHHHhc-chhheeeeeeccccChHHHHH-hhc----CCcceEEecccccee
Confidence 346999999999999999987 478999999999888766543 322 345899999998665
No 310
>PLN02740 Alcohol dehydrogenase-like
Probab=93.79 E-value=0.48 Score=46.47 Aligned_cols=100 Identities=14% Similarity=0.113 Sum_probs=61.1
Q ss_pred CCCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEE--echHhHHhhCCCCCc
Q 019187 125 PNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHI--GDGVAFLKAVPEGTY 201 (345)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~--~D~~~~l~~~~~~~y 201 (345)
....+||++|+|. |..+..+++..+..+|++++.+++-.+.+++. .. +.-+.... .|..+.+.+...+.+
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~-Ga------~~~i~~~~~~~~~~~~v~~~~~~g~ 269 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM-GI------TDFINPKDSDKPVHERIREMTGGGV 269 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc-CC------cEEEecccccchHHHHHHHHhCCCC
Confidence 3467999998765 44555677776666799999999999999763 21 11111111 123333333223369
Q ss_pred cEEEEcCCCCCCCccccCcHHHHHHHHhccCCC-cEEEEec
Q 019187 202 DAVIVDSSDPIGPAQELFEKPFFESVAKALRPG-GVVSTQA 241 (345)
Q Consensus 202 DvIi~D~~~p~~~~~~l~t~ef~~~v~r~Lkpg-Gvlv~~~ 241 (345)
|+|+- ... ....++...+.++++ |.+++-.
T Consensus 270 dvvid-~~G---------~~~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 270 DYSFE-CAG---------NVEVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred CEEEE-CCC---------ChHHHHHHHHhhhcCCCEEEEEc
Confidence 98873 322 125677777889896 9887643
No 311
>PHA01634 hypothetical protein
Probab=93.77 E-value=0.15 Score=42.67 Aligned_cols=75 Identities=11% Similarity=0.107 Sum_probs=53.3
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
+.++|+|||++-|..+..++-. +.+.|.++|.++...+..++.+..+. .-|..+ . .+ +|-. .=+.||+.+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~-GAK~Vva~E~~~kl~k~~een~k~nn--I~DK~v-~-~~---eW~~--~Y~~~Di~~ 97 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR-GASFVVQYEKEEKLRKKWEEVCAYFN--ICDKAV-M-KG---EWNG--EYEDVDIFV 97 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc-CccEEEEeccCHHHHHHHHHHhhhhe--eeecee-e-cc---cccc--cCCCcceEE
Confidence 5789999999999999998766 57899999999999999998765431 001000 0 01 2322 136799999
Q ss_pred EcCCC
Q 019187 206 VDSSD 210 (345)
Q Consensus 206 ~D~~~ 210 (345)
+|.-.
T Consensus 98 iDCeG 102 (156)
T PHA01634 98 MDCEG 102 (156)
T ss_pred EEccc
Confidence 98753
No 312
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=93.74 E-value=0.47 Score=45.56 Aligned_cols=99 Identities=23% Similarity=0.288 Sum_probs=67.6
Q ss_pred CCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
.+.+|.+||+|. |..+..++--- ...|+..|++..-++.....|. .|++.+......+-+. -.++|+|
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n~~rl~~ldd~f~--------~rv~~~~st~~~iee~--v~~aDlv 235 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLNIDRLRQLDDLFG--------GRVHTLYSTPSNIEEA--VKKADLV 235 (371)
T ss_pred CCccEEEECCccccchHHHHHhcc-CCeeEEEecCHHHHhhhhHhhC--------ceeEEEEcCHHHHHHH--hhhccEE
Confidence 356899999886 44444455443 5689999999887776666553 4788888877665443 3678999
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEE
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVST 239 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~ 239 (345)
|.-.--|...++.|.+ +++.+.|+||++++=
T Consensus 236 IgaVLIpgakaPkLvt----~e~vk~MkpGsVivD 266 (371)
T COG0686 236 IGAVLIPGAKAPKLVT----REMVKQMKPGSVIVD 266 (371)
T ss_pred EEEEEecCCCCceehh----HHHHHhcCCCcEEEE
Confidence 9654444444455544 556667999998864
No 313
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.73 E-value=0.06 Score=46.18 Aligned_cols=76 Identities=18% Similarity=0.204 Sum_probs=51.5
Q ss_pred HHHHHhcccccCCCC-ceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHh
Q 019187 113 QEMITHLPLCSIPNP-KKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVA 191 (345)
Q Consensus 113 ~e~l~~l~l~~~~~~-~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~ 191 (345)
.|.+.++.-+...++ .+.+|||.|+|.+....+++. ....++||++|-.+..+|-+.-. .+. ..+..+...|..+
T Consensus 58 teQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R--~g~-~k~trf~RkdlwK 133 (199)
T KOG4058|consen 58 TEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWR--AGC-AKSTRFRRKDLWK 133 (199)
T ss_pred HHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHH--Hhc-ccchhhhhhhhhh
Confidence 455555433333344 699999999999999999884 56789999999999888754221 121 2355666666554
Q ss_pred H
Q 019187 192 F 192 (345)
Q Consensus 192 ~ 192 (345)
+
T Consensus 134 ~ 134 (199)
T KOG4058|consen 134 V 134 (199)
T ss_pred c
Confidence 4
No 314
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=93.64 E-value=0.27 Score=45.85 Aligned_cols=109 Identities=18% Similarity=0.179 Sum_probs=65.3
Q ss_pred CCCceEEEEeccchHHHHH---HHhcC--CCcEEEEEECCH--------------------------HHHHHHHhccccc
Q 019187 125 PNPKKVLVIGGGDGGVLRE---VSRHS--SVEKIDICEIDK--------------------------MVVDVSKQFFPDV 173 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~---ll~~~--~~~~V~~VEid~--------------------------~vi~~ar~~~~~~ 173 (345)
.-|..|+++|+--|+.+.. +++.. ...++.+.|-=+ .-.+..+++|...
T Consensus 73 ~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~ 152 (248)
T PF05711_consen 73 DVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARY 152 (248)
T ss_dssp TS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCT
T ss_pred CCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHc
Confidence 3478999999988876543 33322 245677766311 1344555555543
Q ss_pred ccCCCCCCEEEEEechHhHHhhCCCCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 174 AVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 174 ~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
++.+++++++.|...+-+...+.+++-++-+|..- ..+ |.+.++.++..|.|||++++.-
T Consensus 153 --gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~Dl-Yes-----T~~aLe~lyprl~~GGiIi~DD 212 (248)
T PF05711_consen 153 --GLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDL-YES-----TKDALEFLYPRLSPGGIIIFDD 212 (248)
T ss_dssp --TTSSTTEEEEES-HHHHCCC-TT--EEEEEE---S-HHH-----HHHHHHHHGGGEEEEEEEEESS
T ss_pred --CCCcccEEEECCcchhhhccCCCccEEEEEEeccc-hHH-----HHHHHHHHHhhcCCCeEEEEeC
Confidence 34467999999998888776656778777777521 011 5788999999999999999964
No 315
>PLN02827 Alcohol dehydrogenase-like
Probab=93.59 E-value=0.52 Score=46.34 Aligned_cols=100 Identities=14% Similarity=0.161 Sum_probs=61.2
Q ss_pred CCCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEE--echHhHHhhCCCCCc
Q 019187 125 PNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHI--GDGVAFLKAVPEGTY 201 (345)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~--~D~~~~l~~~~~~~y 201 (345)
....+||+.|+|. |..+.++++..+...|++++.+++-.+.+++. .. +.-+.... .+..+.+.+...+.+
T Consensus 192 ~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~l-Ga------~~~i~~~~~~~~~~~~v~~~~~~g~ 264 (378)
T PLN02827 192 SKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTF-GV------TDFINPNDLSEPIQQVIKRMTGGGA 264 (378)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc-CC------cEEEcccccchHHHHHHHHHhCCCC
Confidence 3467999998755 44555677776666789999998888888663 21 00011111 133333443223369
Q ss_pred cEEEEcCCCCCCCccccCcHHHHHHHHhccCCC-cEEEEec
Q 019187 202 DAVIVDSSDPIGPAQELFEKPFFESVAKALRPG-GVVSTQA 241 (345)
Q Consensus 202 DvIi~D~~~p~~~~~~l~t~ef~~~v~r~Lkpg-Gvlv~~~ 241 (345)
|+|+ |... ....+....+.|++| |.+++-.
T Consensus 265 d~vi-d~~G---------~~~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 265 DYSF-ECVG---------DTGIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred CEEE-ECCC---------ChHHHHHHHHhhccCCCEEEEEC
Confidence 9887 3322 124567788889998 9998643
No 316
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=93.57 E-value=0.66 Score=42.02 Aligned_cols=99 Identities=19% Similarity=0.290 Sum_probs=62.0
Q ss_pred CCCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccE
Q 019187 125 PNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (345)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDv 203 (345)
....+||+.|+|+ |..+..+++..+ .+|++++.++...+.+++.... .-+.....+...-+.....+.+|+
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~d~ 204 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAKELGAD-------HVIDYKEEDLEEELRLTGGGGADV 204 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHHhCCc-------eeccCCcCCHHHHHHHhcCCCCCE
Confidence 4567999999886 666666777654 6899999998887877654211 001111112111111122467999
Q ss_pred EEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 204 Ii~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
|+..... ...++.+.+.|+++|.++...
T Consensus 205 vi~~~~~----------~~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 205 VIDAVGG----------PETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred EEECCCC----------HHHHHHHHHhcccCCEEEEEc
Confidence 9854322 145777888999999998754
No 317
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=93.47 E-value=0.19 Score=43.76 Aligned_cols=102 Identities=24% Similarity=0.287 Sum_probs=57.4
Q ss_pred CceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEE-EEEechHhHHhhCCCCCccEEE
Q 019187 127 PKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVT-LHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 127 ~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~-v~~~D~~~~l~~~~~~~yDvIi 205 (345)
.++++++|..-=-+-...+++ +..+|..||-++--++ +.+ .+ |+. +...|...-.+.. .++||++.
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~-GA~~iltveyn~L~i~---~~~-------~d-r~ssi~p~df~~~~~~y-~~~fD~~a 68 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQH-GAAKILTVEYNKLEIQ---EEF-------RD-RLSSILPVDFAKNWQKY-AGSFDFAA 68 (177)
T ss_pred CceEEEEecCCchhhHHHHHc-CCceEEEEeecccccC---ccc-------cc-ccccccHHHHHHHHHHh-hccchhhh
Confidence 468999998855444445556 5778999997652111 111 11 222 2223322222233 57899987
Q ss_pred EcCC-CCCC------CccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 206 VDSS-DPIG------PAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 206 ~D~~-~p~~------~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
+-++ .+.+ |....-...-+.+++++||+||.|.+-.
T Consensus 69 s~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~v 111 (177)
T PF03269_consen 69 SFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGV 111 (177)
T ss_pred eechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEe
Confidence 6322 1111 1111223577899999999999988754
No 318
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=93.47 E-value=0.086 Score=52.51 Aligned_cols=56 Identities=23% Similarity=0.386 Sum_probs=44.6
Q ss_pred eEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEec
Q 019187 129 KVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGD 188 (345)
Q Consensus 129 ~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D 188 (345)
-||+||.|+|.+..-..+.. ...|+++|.=.-|.+.|++-..+. ++. .+++++..-
T Consensus 69 ~vLdigtGTGLLSmMAvrag-aD~vtA~EvfkPM~d~arkI~~kn--g~S-dkI~vInkr 124 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAG-ADSVTACEVFKPMVDLARKIMHKN--GMS-DKINVINKR 124 (636)
T ss_pred EEEEccCCccHHHHHHHHhc-CCeEEeehhhchHHHHHHHHHhcC--CCc-cceeeeccc
Confidence 68999999999888777774 678999999999999999876553 444 377776643
No 319
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=93.42 E-value=0.035 Score=51.96 Aligned_cols=113 Identities=17% Similarity=0.205 Sum_probs=60.9
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCC------------C-------------C
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFE------------D-------------P 180 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~------------~-------------~ 180 (345)
+..++||||+|.-.. ..+....-..+|++.|..+.-.+..++++..- ..++ . .
T Consensus 56 ~g~~llDiGsGPtiy-~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~-~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIY-QLLSACEWFEEIVLSDYSEQNREELEKWLRKE-GAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--G-GGTTGGGTEEEEEEEESSHHHHHHHHHHHTT--TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHH-hhhhHHHhhcceEEeeccHhhHHHHHHHHCCC-CCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 456899999998332 12222233678999999999999888877653 2111 0 0
Q ss_pred CE-EEEEechHhH--Hhh-C-CCCCccEEEEcCCCC-CCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 181 RV-TLHIGDGVAF--LKA-V-PEGTYDAVIVDSSDP-IGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 181 rv-~v~~~D~~~~--l~~-~-~~~~yDvIi~D~~~p-~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
.| +++..|..+- +.. . -..+||+|++-..-. ......-| ...++++.++|||||.|++..
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y-~~al~ni~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEY-RRALRNISSLLKPGGHLILAG 199 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHH-HHHHHHHHTTEEEEEEEEEEE
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHH-HHHHHHHHHHcCCCcEEEEEE
Confidence 13 2555665332 110 0 023599888632210 01111111 345777889999999998865
No 320
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=93.40 E-value=0.67 Score=44.58 Aligned_cols=99 Identities=25% Similarity=0.292 Sum_probs=61.9
Q ss_pred CCCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhC-CCCCcc
Q 019187 125 PNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV-PEGTYD 202 (345)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~-~~~~yD 202 (345)
+..++||+.|+|. |..+..+++..+...+++++.+++-.+.++++ .. +.-+.....+..+.+... ....+|
T Consensus 165 ~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~------~~~v~~~~~~~~~~i~~~~~~~~~d 237 (351)
T cd08285 165 KLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEY-GA------TDIVDYKNGDVVEQILKLTGGKGVD 237 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CC------ceEecCCCCCHHHHHHHHhCCCCCc
Confidence 4567999998653 44556677777666799999999888888763 21 111111112222223222 235699
Q ss_pred EEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEe
Q 019187 203 AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (345)
Q Consensus 203 vIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~ 240 (345)
+|+-... ....+..+.++|+++|.++.-
T Consensus 238 ~vld~~g----------~~~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 238 AVIIAGG----------GQDTFEQALKVLKPGGTISNV 265 (351)
T ss_pred EEEECCC----------CHHHHHHHHHHhhcCCEEEEe
Confidence 8873222 125678889999999998864
No 321
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=93.33 E-value=0.083 Score=45.19 Aligned_cols=114 Identities=18% Similarity=0.164 Sum_probs=57.5
Q ss_pred HHHhcccccCCCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHh
Q 019187 115 MITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLK 194 (345)
Q Consensus 115 ~l~~l~l~~~~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~ 194 (345)
.|.|.......-+.-||++|.|+|.+=-++-...+..+|.+.|-.-. .+ +.. ..+.-.++.||+++-+.
T Consensus 17 ~L~~a~~~v~~~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~------~h-p~~----~P~~~~~ilGdi~~tl~ 85 (160)
T PF12692_consen 17 CLNWAAAQVAGLPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALA------CH-PSS----TPPEEDLILGDIRETLP 85 (160)
T ss_dssp HHHHHHHHTTT--S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--------S--GGG-------GGGEEES-HHHHHH
T ss_pred HHHHHHHHhcCCCCceEEeccCCCccHHHHHHhCCCCeEEEEeeecc------cC-CCC----CCchHheeeccHHHHhH
Confidence 34444433334467899999999999888888777889999986221 11 111 12334688999988776
Q ss_pred hC--CCCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEE
Q 019187 195 AV--PEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVST 239 (345)
Q Consensus 195 ~~--~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~ 239 (345)
.. -..+.-++-.|.-........-+..-.=..+..+|.|||+++.
T Consensus 86 ~~~~~g~~a~laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS 132 (160)
T PF12692_consen 86 ALARFGAGAALAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVS 132 (160)
T ss_dssp HHHHH-S-EEEEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred HHHhcCCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEe
Confidence 42 1344445555654322111111112233456789999999985
No 322
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=93.31 E-value=0.35 Score=42.31 Aligned_cols=106 Identities=18% Similarity=0.275 Sum_probs=65.3
Q ss_pred EEEeccchHHHHHHHhcCC-CcEEEEEECCHH--HHHHHH---hcccccccCCCCCCEEEE-EechHhHHhhC--CCCCc
Q 019187 131 LVIGGGDGGVLREVSRHSS-VEKIDICEIDKM--VVDVSK---QFFPDVAVGFEDPRVTLH-IGDGVAFLKAV--PEGTY 201 (345)
Q Consensus 131 L~IG~G~G~~~~~ll~~~~-~~~V~~VEid~~--vi~~ar---~~~~~~~~~~~~~rv~v~-~~D~~~~l~~~--~~~~y 201 (345)
|.||=|+-..+..++++.+ ..++++.-.|.. +.+... +++.. +....++++ .-|+.+.-+.. ...+|
T Consensus 1 LlvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~----L~~~g~~V~~~VDat~l~~~~~~~~~~F 76 (166)
T PF10354_consen 1 LLVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEE----LRELGVTVLHGVDATKLHKHFRLKNQRF 76 (166)
T ss_pred CeeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHH----HhhcCCccccCCCCCcccccccccCCcC
Confidence 6799999999999998754 567777666643 333322 12221 233344433 34554433222 35789
Q ss_pred cEEEEcCCCCCCC-----c----cccCcHHHHHHHHhccCCCcEEEEe
Q 019187 202 DAVIVDSSDPIGP-----A----QELFEKPFFESVAKALRPGGVVSTQ 240 (345)
Q Consensus 202 DvIi~D~~~p~~~-----~----~~l~t~ef~~~v~r~LkpgGvlv~~ 240 (345)
|.||.+.+..... . ....-..||+.+.++|+++|.+.+.
T Consensus 77 DrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVT 124 (166)
T PF10354_consen 77 DRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVT 124 (166)
T ss_pred CEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 9999887754311 0 1112368999999999999987664
No 323
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=93.26 E-value=0.67 Score=48.92 Aligned_cols=98 Identities=17% Similarity=0.270 Sum_probs=61.6
Q ss_pred CceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHh--HHhhCCCCCccE
Q 019187 127 PKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVA--FLKAVPEGTYDA 203 (345)
Q Consensus 127 ~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~--~l~~~~~~~yDv 203 (345)
..+|+++|+|. |......++.. ..+++++|.|++.++.+++. ..+++.+|+.+ .+++..-++.|+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~-g~~vvvID~d~~~v~~~~~~-----------g~~v~~GDat~~~~L~~agi~~A~~ 467 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSS-GVKMTVLDHDPDHIETLRKF-----------GMKVFYGDATRMDLLESAGAAKAEV 467 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHhc-----------CCeEEEEeCCCHHHHHhcCCCcCCE
Confidence 36899999987 33333333332 34799999999999988762 25689999854 455443468899
Q ss_pred EEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEeccc
Q 019187 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAES 243 (345)
Q Consensus 204 Ii~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s 243 (345)
|++-..++.. ....-...|.+.|+-.++..+.+
T Consensus 468 vvv~~~d~~~-------n~~i~~~ar~~~p~~~iiaRa~d 500 (621)
T PRK03562 468 LINAIDDPQT-------SLQLVELVKEHFPHLQIIARARD 500 (621)
T ss_pred EEEEeCCHHH-------HHHHHHHHHHhCCCCeEEEEECC
Confidence 9876655321 12222334455676666655433
No 324
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=93.22 E-value=1.9 Score=40.67 Aligned_cols=146 Identities=19% Similarity=0.234 Sum_probs=86.5
Q ss_pred eEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhh-CCCCCccEEEEc
Q 019187 129 KVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKA-VPEGTYDAVIVD 207 (345)
Q Consensus 129 ~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~-~~~~~yDvIi~D 207 (345)
+|++|-||.|++...+.+. +..-+.++|+|+..++.-+.+++ .+..+|..+.-.. .+. ..|+|+.-
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a-g~~~~~a~e~~~~a~~~y~~N~~-----------~~~~~Di~~~~~~~l~~-~~D~l~gg 68 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA-GFEVVWAVEIDPDACETYKANFP-----------EVICGDITEIDPSDLPK-DVDLLIGG 68 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT-TEEEEEEEESSHHHHHHHHHHHT-----------EEEESHGGGCHHHHHHH-T-SEEEEE
T ss_pred cEEEEccCccHHHHHHHhc-CcEEEEEeecCHHHHHhhhhccc-----------ccccccccccccccccc-cceEEEec
Confidence 6899999999998887776 36778999999999999988873 6778887765432 222 59999976
Q ss_pred CCCCC-CCc----------cccCcHHHHHHHHhccCCCcEEEEeccchhhh--hhHHHHHHHHHHhhcCCcceEEEEEEe
Q 019187 208 SSDPI-GPA----------QELFEKPFFESVAKALRPGGVVSTQAESIWLH--MHIIEDIVANCRQIFKGSVNYAWTTVP 274 (345)
Q Consensus 208 ~~~p~-~~~----------~~l~t~ef~~~v~r~LkpgGvlv~~~~s~~~~--~~~~~~i~~~l~~~F~~~v~~~~~~vP 274 (345)
++... ..+ ..|+ .++++. .+.++|.-+++=|....... ...+..+++.+.+. .-.+.+.....-
T Consensus 69 pPCQ~fS~ag~~~~~~d~r~~L~-~~~~~~-v~~~~Pk~~~~ENV~~l~~~~~~~~~~~i~~~l~~l-GY~v~~~vlna~ 145 (335)
T PF00145_consen 69 PPCQGFSIAGKRKGFDDPRNSLF-FEFLRI-VKELKPKYFLLENVPGLLSSKNGEVFKEILEELEEL-GYNVQWRVLNAA 145 (335)
T ss_dssp ---TTTSTTSTHHCCCCHTTSHH-HHHHHH-HHHHS-SEEEEEEEGGGGTGGGHHHHHHHHHHHHHT-TEEEEEEEEEGG
T ss_pred cCCceEeccccccccccccchhh-HHHHHH-HhhccceEEEecccceeecccccccccccccccccc-ceeehhccccHh
Confidence 55321 111 1121 234443 45678988777676443332 24566777777653 112322222333
Q ss_pred ecCCC---cEEEEEEecCC
Q 019187 275 TYPSG---VIGFMLCSTEG 290 (345)
Q Consensus 275 ~y~~g---~w~~~~ask~~ 290 (345)
.|..- .-.|++|.+..
T Consensus 146 ~yGvPQ~R~R~fivg~r~~ 164 (335)
T PF00145_consen 146 DYGVPQNRERVFIVGIRKD 164 (335)
T ss_dssp GGTSSBE-EEEEEEEEEGG
T ss_pred hCCCCCceeeEEEEEECCC
Confidence 34211 24788888764
No 325
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=92.89 E-value=0.69 Score=43.77 Aligned_cols=99 Identities=21% Similarity=0.284 Sum_probs=61.5
Q ss_pred CCCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccE
Q 019187 125 PNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (345)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDv 203 (345)
....+||+.|+|. |..+.++++..+ .+|++++.+++..+.++++ .. +.-+.....+....+.....+.+|+
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~G-~~V~~~~~s~~~~~~~~~~-g~------~~~~~~~~~~~~~~~~~~~~~~~D~ 235 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAMG-AAVIAVDIKEEKLELAKEL-GA------DEVLNSLDDSPKDKKAAGLGGGFDV 235 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHh-CC------CEEEcCCCcCHHHHHHHhcCCCceE
Confidence 3456999987653 667777787755 4699999999888888663 21 0011111112222222223567998
Q ss_pred EEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 204 Ii~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
|+..... ...++.+.+.|+++|.++..+
T Consensus 236 vid~~g~----------~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 236 IFDFVGT----------QPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred EEECCCC----------HHHHHHHHHHhhcCCEEEEEC
Confidence 7732211 356788899999999998754
No 326
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=92.80 E-value=0.18 Score=43.90 Aligned_cols=105 Identities=18% Similarity=0.188 Sum_probs=55.2
Q ss_pred CCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhccccccc-CCC--CCCEEEEEechHhHHhhC-----
Q 019187 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAV-GFE--DPRVTLHIGDGVAFLKAV----- 196 (345)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~-~~~--~~rv~v~~~D~~~~l~~~----- 196 (345)
.|.+|+++|.|. |.-+.++++.-+ .+++..|..+...+..+......-. ... ..+.. -|-..|-+..
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lG-a~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 94 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLG-AEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKD---FDKADYYEHPESYES 94 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT--EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB----CCHHHCHHHCCHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCC-CEEEeccCCHHHHHhhhcccCceEEEcccccccccc---cchhhhhHHHHHhHH
Confidence 578999999997 445555666554 5799999999888777665433200 000 00000 1111111110
Q ss_pred ----CCCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEE
Q 019187 197 ----PEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVS 238 (345)
Q Consensus 197 ----~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv 238 (345)
.-..+|+||+...-+....+.|++++-.+ .|+|+-+++
T Consensus 95 ~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~----~m~~gsvIv 136 (168)
T PF01262_consen 95 NFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVK----SMKPGSVIV 136 (168)
T ss_dssp HHHHHHHH-SEEEEHHHBTTSS---SBEHHHHH----TSSTTEEEE
T ss_pred HHHHHHhhCcEEeeecccCCCCCCEEEEhHHhh----ccCCCceEE
Confidence 01458999976655555667788876544 466655554
No 327
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.70 E-value=0.49 Score=45.81 Aligned_cols=103 Identities=13% Similarity=0.176 Sum_probs=62.9
Q ss_pred CceEEEEeccc--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccc-----cCC----CCCCEEEEEechHhHHhh
Q 019187 127 PKKVLVIGGGD--GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVA-----VGF----EDPRVTLHIGDGVAFLKA 195 (345)
Q Consensus 127 ~~~VL~IG~G~--G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~-----~~~----~~~rv~v~~~D~~~~l~~ 195 (345)
.++|-+||+|. .+++..++.+ .-+|+++|++++.++.+++.+.... .++ ...++++. .|..+.+
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a--G~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~av-- 81 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH--GLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEACV-- 81 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHHHh--
Confidence 47899999995 3444555655 4689999999988776655332110 000 01233332 2322222
Q ss_pred CCCCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEecc
Q 019187 196 VPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAE 242 (345)
Q Consensus 196 ~~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~ 242 (345)
..-|+|+-..+.... ...++|+.+-+.++|+.+|..++.
T Consensus 82 ---~~aDlViEavpE~l~-----vK~~lf~~l~~~~~~~aIlaSnTS 120 (321)
T PRK07066 82 ---ADADFIQESAPEREA-----LKLELHERISRAAKPDAIIASSTS 120 (321)
T ss_pred ---cCCCEEEECCcCCHH-----HHHHHHHHHHHhCCCCeEEEECCC
Confidence 345999966543211 246788999999999988877664
No 328
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=92.64 E-value=0.2 Score=44.63 Aligned_cols=52 Identities=21% Similarity=0.135 Sum_probs=38.0
Q ss_pred HHHhcccccCCCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHh
Q 019187 115 MITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQ 168 (345)
Q Consensus 115 ~l~~l~l~~~~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~ 168 (345)
++..+-........-|||--+|+|.++..+.+. ..+..++|++++.+++|++
T Consensus 180 l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 180 LIERLIKASTNPGDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHhhhccceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHhcC
Confidence 333333333455678999999999999998887 4689999999999999975
No 329
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=92.62 E-value=0.93 Score=43.74 Aligned_cols=92 Identities=13% Similarity=0.175 Sum_probs=57.5
Q ss_pred CCceEEEEeccchH-HHHHHHhc-CCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccE
Q 019187 126 NPKKVLVIGGGDGG-VLREVSRH-SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (345)
Q Consensus 126 ~~~~VL~IG~G~G~-~~~~ll~~-~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDv 203 (345)
...+||++|+|.=+ ++..++++ .+..+|+++|.+++-++.+++ +.. . ....+ +.. ...+|+
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~---------~-~~~~~---~~~---~~g~d~ 225 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADE---------T-YLIDD---IPE---DLAVDH 225 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCc---------e-eehhh---hhh---ccCCcE
Confidence 46799999976533 44455664 445689999999988888875 221 0 11111 111 224898
Q ss_pred EEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 204 Ii~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
|+ |..... .+...++...++|+++|.+++-.
T Consensus 226 vi-D~~G~~------~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 226 AF-ECVGGR------GSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred EE-ECCCCC------ccHHHHHHHHHhCcCCcEEEEEe
Confidence 87 443211 02356788889999999998754
No 330
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=92.60 E-value=0.7 Score=44.75 Aligned_cols=97 Identities=22% Similarity=0.298 Sum_probs=62.7
Q ss_pred CCceEEEEe--ccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCC-CCcc
Q 019187 126 NPKKVLVIG--GGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPE-GTYD 202 (345)
Q Consensus 126 ~~~~VL~IG--~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~-~~yD 202 (345)
..++||+.| +|-|.++.++++..+. .+.++--+++-.+.+++.-.. .-+.+...|..+-+++... ..+|
T Consensus 142 ~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGAd-------~vi~y~~~~~~~~v~~~t~g~gvD 213 (326)
T COG0604 142 PGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGAD-------HVINYREEDFVEQVRELTGGKGVD 213 (326)
T ss_pred CCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCCC-------EEEcCCcccHHHHHHHHcCCCCce
Confidence 367999999 4557788889998765 444444555444577765432 2334445555555544323 4699
Q ss_pred EEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 203 AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 203 vIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
+|+ |+. + .+.+....+.|+++|.++.-.
T Consensus 214 vv~-D~v---G-------~~~~~~~l~~l~~~G~lv~ig 241 (326)
T COG0604 214 VVL-DTV---G-------GDTFAASLAALAPGGRLVSIG 241 (326)
T ss_pred EEE-ECC---C-------HHHHHHHHHHhccCCEEEEEe
Confidence 988 321 2 367778999999999998754
No 331
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.59 E-value=0.29 Score=46.12 Aligned_cols=102 Identities=22% Similarity=0.329 Sum_probs=61.2
Q ss_pred ceEEEEeccc--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhccccc----c-cC-CCC-------CCEEEEEechHhH
Q 019187 128 KKVLVIGGGD--GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDV----A-VG-FED-------PRVTLHIGDGVAF 192 (345)
Q Consensus 128 ~~VL~IG~G~--G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~----~-~~-~~~-------~rv~v~~~D~~~~ 192 (345)
++|.+||+|. +.++..++++. .+|+++|++++.++.+++.+... . .+ +.. .++++ ..|. +-
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g--~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~-~~ 79 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAG--YDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDL-DD 79 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCC--CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCH-HH
Confidence 4799999995 44556666662 48999999999887654322111 0 01 000 13332 2332 11
Q ss_pred HhhCCCCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEeccc
Q 019187 193 LKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAES 243 (345)
Q Consensus 193 l~~~~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s 243 (345)
+ +..|+||...+... ....++++.+.+.++|+.+++.++.+
T Consensus 80 ~-----~~aDlVi~av~e~~-----~~k~~~~~~l~~~~~~~~il~s~ts~ 120 (282)
T PRK05808 80 L-----KDADLVIEAATENM-----DLKKKIFAQLDEIAKPEAILATNTSS 120 (282)
T ss_pred h-----ccCCeeeecccccH-----HHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 2 34699996553311 11358899999999999988776654
No 332
>PRK10637 cysG siroheme synthase; Provisional
Probab=92.56 E-value=0.46 Score=48.25 Aligned_cols=77 Identities=18% Similarity=0.216 Sum_probs=46.3
Q ss_pred HhcccccCCCCceEEEEeccchHHHHH--HHhcCCCcEEEEE--ECCHHHHHHHHhcccccccCCCCCCEEEEEechHhH
Q 019187 117 THLPLCSIPNPKKVLVIGGGDGGVLRE--VSRHSSVEKIDIC--EIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAF 192 (345)
Q Consensus 117 ~~l~l~~~~~~~~VL~IG~G~G~~~~~--ll~~~~~~~V~~V--Eid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~ 192 (345)
.++|+...-+.++||+||||.=+.-+. +++. ..+|++| ++++++-++++ ..+++++..+..
T Consensus 2 ~~~P~~~~l~~~~vlvvGgG~vA~rk~~~ll~~--ga~v~visp~~~~~~~~l~~-----------~~~i~~~~~~~~-- 66 (457)
T PRK10637 2 DHLPIFCQLRDRDCLLVGGGDVAERKARLLLDA--GARLTVNALAFIPQFTAWAD-----------AGMLTLVEGPFD-- 66 (457)
T ss_pred CeeceEEEcCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCCCHHHHHHHh-----------CCCEEEEeCCCC--
Confidence 346666555789999999998654433 4444 3567776 66677655543 236677665532
Q ss_pred HhhCCCCCccEEEEcCCC
Q 019187 193 LKAVPEGTYDAVIVDSSD 210 (345)
Q Consensus 193 l~~~~~~~yDvIi~D~~~ 210 (345)
... -..+++||+...|
T Consensus 67 -~~d-l~~~~lv~~at~d 82 (457)
T PRK10637 67 -ESL-LDTCWLAIAATDD 82 (457)
T ss_pred -hHH-hCCCEEEEECCCC
Confidence 111 2346888866554
No 333
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=92.44 E-value=0.99 Score=40.78 Aligned_cols=90 Identities=21% Similarity=0.162 Sum_probs=53.6
Q ss_pred CCCceEEEEeccchHHH--HHHHhcCCCcEEEEEECC--HHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCC
Q 019187 125 PNPKKVLVIGGGDGGVL--REVSRHSSVEKIDICEID--KMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGT 200 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~--~~ll~~~~~~~V~~VEid--~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~ 200 (345)
-..++||+||+|.=+.. +.+++. ..+|++|+.+ ++..++++ ..+++++.++.... . -..
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~--ga~VtVvsp~~~~~l~~l~~-----------~~~i~~~~~~~~~~--d--l~~ 69 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKA--GAQLRVIAEELESELTLLAE-----------QGGITWLARCFDAD--I--LEG 69 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHC--CCEEEEEcCCCCHHHHHHHH-----------cCCEEEEeCCCCHH--H--hCC
Confidence 35679999999975443 335554 4588888654 44444432 23688887774322 1 245
Q ss_pred ccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 201 YDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 201 yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
+|+||+...++ +.-+.+....+..|+++-..
T Consensus 70 ~~lVi~at~d~----------~ln~~i~~~a~~~~ilvn~~ 100 (205)
T TIGR01470 70 AFLVIAATDDE----------ELNRRVAHAARARGVPVNVV 100 (205)
T ss_pred cEEEEECCCCH----------HHHHHHHHHHHHcCCEEEEC
Confidence 89998765543 23344455555668887543
No 334
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=92.33 E-value=1.4 Score=43.81 Aligned_cols=103 Identities=17% Similarity=0.197 Sum_probs=61.8
Q ss_pred CceEEEEe--ccchHHHHHHHhcC--CCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEE----echHhHHhhC-C
Q 019187 127 PKKVLVIG--GGDGGVLREVSRHS--SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHI----GDGVAFLKAV-P 197 (345)
Q Consensus 127 ~~~VL~IG--~G~G~~~~~ll~~~--~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~----~D~~~~l~~~-~ 197 (345)
..+||++| ++-|..+..+++.. +..+|+++|.+++-++.+++.++.... .......++. .|..+.+.+. .
T Consensus 176 g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~-~~Ga~~~~i~~~~~~~~~~~v~~~t~ 254 (410)
T cd08238 176 GGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAA-SRGIELLYVNPATIDDLHATLMELTG 254 (410)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhcccccc-ccCceEEEECCCccccHHHHHHHHhC
Confidence 46899998 34566777777764 335799999999999999886432100 0000111221 2333334332 2
Q ss_pred CCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEe
Q 019187 198 EGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (345)
Q Consensus 198 ~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~ 240 (345)
...+|+|+..... ...++...+.|+++|.+++.
T Consensus 255 g~g~D~vid~~g~----------~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 255 GQGFDDVFVFVPV----------PELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred CCCCCEEEEcCCC----------HHHHHHHHHHhccCCeEEEE
Confidence 3469988854322 25677888899988866543
No 335
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=92.32 E-value=1.1 Score=42.36 Aligned_cols=97 Identities=19% Similarity=0.176 Sum_probs=62.2
Q ss_pred CCceEEEEe--ccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccE
Q 019187 126 NPKKVLVIG--GGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (345)
Q Consensus 126 ~~~~VL~IG--~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDv 203 (345)
...+||+.| +|-|..+..+++..+. +|+++.-+++-.+.+++ +.. +.-+.....|..+.+.....+.+|+
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~~l~~-~Ga------~~vi~~~~~~~~~~v~~~~~~gvd~ 214 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVAWLKE-LGF------DAVFNYKTVSLEEALKEAAPDGIDC 214 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH-cCC------CEEEeCCCccHHHHHHHHCCCCcEE
Confidence 457999998 4556677778887654 68889988888888877 331 1011111123333343332356998
Q ss_pred EEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 204 Ii~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
|+ |... ...++...++|+++|.++...
T Consensus 215 vl-d~~g----------~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 215 YF-DNVG----------GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred EE-ECCC----------HHHHHHHHHhhccCCEEEEEc
Confidence 87 4322 145688899999999998643
No 336
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=92.24 E-value=0.46 Score=41.98 Aligned_cols=101 Identities=17% Similarity=0.262 Sum_probs=59.7
Q ss_pred eEEEEeccchHHH--HHHHhcCCCcEEEEEECCHHHHHHHHhcccccc------cCCC-------CCCEEEEEechHhHH
Q 019187 129 KVLVIGGGDGGVL--REVSRHSSVEKIDICEIDKMVVDVSKQFFPDVA------VGFE-------DPRVTLHIGDGVAFL 193 (345)
Q Consensus 129 ~VL~IG~G~G~~~--~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~------~~~~-------~~rv~v~~~D~~~~l 193 (345)
+|.+||+|.-+.. ..++.+ ..+|+.+|.+++.++.+++++...- +.+. -.++++ ..| +
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~d----l 73 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA--GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF-TTD----L 73 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT--TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE-ESS----G
T ss_pred CEEEEcCCHHHHHHHHHHHhC--CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc-ccC----H
Confidence 5889999885543 334444 4689999999999998887655410 1111 123442 233 2
Q ss_pred hhCCCCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEeccc
Q 019187 194 KAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAES 243 (345)
Q Consensus 194 ~~~~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s 243 (345)
... . ..|+||=..+... -..+++|+.+.+.+.|+-+|+.++.+
T Consensus 74 ~~~-~-~adlViEai~E~l-----~~K~~~~~~l~~~~~~~~ilasnTSs 116 (180)
T PF02737_consen 74 EEA-V-DADLVIEAIPEDL-----ELKQELFAELDEICPPDTILASNTSS 116 (180)
T ss_dssp GGG-C-TESEEEE-S-SSH-----HHHHHHHHHHHCCS-TTSEEEE--SS
T ss_pred HHH-h-hhheehhhccccH-----HHHHHHHHHHHHHhCCCceEEecCCC
Confidence 222 2 5788884433211 11468999999999999999998754
No 337
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.20 E-value=0.68 Score=44.18 Aligned_cols=103 Identities=13% Similarity=0.230 Sum_probs=58.4
Q ss_pred ceEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCC--------CCEEEEEechHhHHhhCC
Q 019187 128 KKVLVIGGGDGG--VLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFED--------PRVTLHIGDGVAFLKAVP 197 (345)
Q Consensus 128 ~~VL~IG~G~G~--~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~--------~rv~v~~~D~~~~l~~~~ 197 (345)
++|.+||+|.-+ ++..+++. ..+|+++|.+++.++.+++........... .++++ ..|..+.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~--g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~---- 77 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARK--GLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLAAAV---- 77 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHHHHh----
Confidence 689999999644 44445554 247999999998888776642111000000 11221 23322222
Q ss_pred CCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEeccc
Q 019187 198 EGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAES 243 (345)
Q Consensus 198 ~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s 243 (345)
+..|+||...+.... ...++++.+...++++-+++..+.+
T Consensus 78 -~~aDlVi~av~~~~~-----~~~~v~~~l~~~~~~~~ii~s~tsg 117 (311)
T PRK06130 78 -SGADLVIEAVPEKLE-----LKRDVFARLDGLCDPDTIFATNTSG 117 (311)
T ss_pred -ccCCEEEEeccCcHH-----HHHHHHHHHHHhCCCCcEEEECCCC
Confidence 346999976543211 1246778888878777676655433
No 338
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=92.13 E-value=1.4 Score=41.92 Aligned_cols=98 Identities=17% Similarity=0.177 Sum_probs=61.6
Q ss_pred CCCceEEEEe--ccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEE-echHhHHhhCCCCCc
Q 019187 125 PNPKKVLVIG--GGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHI-GDGVAFLKAVPEGTY 201 (345)
Q Consensus 125 ~~~~~VL~IG--~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~-~D~~~~l~~~~~~~y 201 (345)
....+||+.| +|-|..+..+++..+. +|+++.-+++-.+.+++ +.. +.-+.... .+..+.++....+.+
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~-lGa------~~vi~~~~~~~~~~~~~~~~~~gv 208 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKK-LGF------DVAFNYKTVKSLEETLKKASPDGY 208 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH-cCC------CEEEeccccccHHHHHHHhCCCCe
Confidence 3457999998 4567777788888654 78888888888888866 321 10011111 122333333323569
Q ss_pred cEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 202 DAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 202 DvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
|+|+ |... .+.++...++|+++|.++...
T Consensus 209 dvv~-d~~G----------~~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 209 DCYF-DNVG----------GEFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred EEEE-ECCC----------HHHHHHHHHHhCcCcEEEEec
Confidence 9888 4322 134578889999999999754
No 339
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.02 E-value=0.72 Score=43.63 Aligned_cols=103 Identities=22% Similarity=0.263 Sum_probs=61.4
Q ss_pred ceEEEEeccchHH--HHHHHhcCCCcEEEEEECCHHHHHHHHhcccccc------cCCCC--------CCEEEEEechHh
Q 019187 128 KKVLVIGGGDGGV--LREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVA------VGFED--------PRVTLHIGDGVA 191 (345)
Q Consensus 128 ~~VL~IG~G~G~~--~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~------~~~~~--------~rv~v~~~D~~~ 191 (345)
++|.+||+|.-+. +..+++. ..+|+++|.+++.++.+++.+.... ..+.. .++++ ..|..+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~ 80 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH--GFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAE 80 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHH
Confidence 5899999996443 3334444 3579999999998888765432110 00110 23332 234333
Q ss_pred HHhhCCCCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEeccc
Q 019187 192 FLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAES 243 (345)
Q Consensus 192 ~l~~~~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s 243 (345)
.+ ..-|+||...+... -...++++.+...++++-+++.++.+
T Consensus 81 a~-----~~aDlVieavpe~~-----~~k~~~~~~l~~~~~~~~ii~sntSt 122 (287)
T PRK08293 81 AV-----KDADLVIEAVPEDP-----EIKGDFYEELAKVAPEKTIFATNSST 122 (287)
T ss_pred Hh-----cCCCEEEEeccCCH-----HHHHHHHHHHHhhCCCCCEEEECccc
Confidence 32 33599997655321 11357788888889888888776543
No 340
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=91.97 E-value=1.2 Score=46.95 Aligned_cols=98 Identities=17% Similarity=0.283 Sum_probs=63.3
Q ss_pred ceEEEEeccchH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHh--HHhhCCCCCccEE
Q 019187 128 KKVLVIGGGDGG-VLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVA--FLKAVPEGTYDAV 204 (345)
Q Consensus 128 ~~VL~IG~G~G~-~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~--~l~~~~~~~yDvI 204 (345)
.+|+++|+|.=+ .....++.. ..+++++|.|++.++.+++. ...++.||+.+ .+++..-++.|+|
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~-g~~vvvID~d~~~v~~~~~~-----------g~~v~~GDat~~~~L~~agi~~A~~v 468 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMAN-KMRITVLERDISAVNLMRKY-----------GYKVYYGDATQLELLRAAGAEKAEAI 468 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHhC-----------CCeEEEeeCCCHHHHHhcCCccCCEE
Confidence 589999988633 222223322 34799999999999988762 25688999854 4555444788998
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEeccch
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESI 244 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s~ 244 (345)
++-..++.. ....-...|.+.|+..++..+.+.
T Consensus 469 v~~~~d~~~-------n~~i~~~~r~~~p~~~IiaRa~~~ 501 (601)
T PRK03659 469 VITCNEPED-------TMKIVELCQQHFPHLHILARARGR 501 (601)
T ss_pred EEEeCCHHH-------HHHHHHHHHHHCCCCeEEEEeCCH
Confidence 876555311 112333455678888888776553
No 341
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=91.96 E-value=0.088 Score=49.70 Aligned_cols=98 Identities=18% Similarity=0.157 Sum_probs=66.7
Q ss_pred CceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEEE
Q 019187 127 PKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIV 206 (345)
Q Consensus 127 ~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi~ 206 (345)
..-+||+|||.|-.+. ..| ...+.++|+....+..|++-- ...+..+|+..... .+..||.++.
T Consensus 46 gsv~~d~gCGngky~~---~~p-~~~~ig~D~c~~l~~~ak~~~----------~~~~~~ad~l~~p~--~~~s~d~~ls 109 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLG---VNP-LCLIIGCDLCTGLLGGAKRSG----------GDNVCRADALKLPF--REESFDAALS 109 (293)
T ss_pred cceeeecccCCcccCc---CCC-cceeeecchhhhhccccccCC----------CceeehhhhhcCCC--CCCccccchh
Confidence 4568999999985432 233 457889999999888887631 11577788776543 3688999885
Q ss_pred cCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 207 DSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 207 D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
-+.-+... ...-....++.+.++|+|||-..+.+
T Consensus 110 iavihhls-T~~RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 110 IAVIHHLS-TRERRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred hhhhhhhh-hHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 44432211 11123578999999999999877654
No 342
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=91.94 E-value=1.2 Score=43.14 Aligned_cols=99 Identities=14% Similarity=0.091 Sum_probs=62.2
Q ss_pred CCCceEEEEec--cchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEe-chHhHHhhCCCCCc
Q 019187 125 PNPKKVLVIGG--GDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIG-DGVAFLKAVPEGTY 201 (345)
Q Consensus 125 ~~~~~VL~IG~--G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~-D~~~~l~~~~~~~y 201 (345)
....+||+.|+ |-|..+..+++..+. +|++++.+++-.+.+++.+.. +.-+..... |..+.+.....+.+
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~~~~~k~~~~~~~lGa------~~vi~~~~~~~~~~~i~~~~~~gv 229 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSAGSSQKVDLLKNKLGF------DEAFNYKEEPDLDAALKRYFPEGI 229 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhcCC------CEEEECCCcccHHHHHHHHCCCCc
Confidence 34679999996 456677778888654 688889888888877643331 101111111 33333433223469
Q ss_pred cEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 202 DAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 202 DvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
|+|+ |... ...+..+.++|+++|.+++-.
T Consensus 230 D~v~-d~vG----------~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 230 DIYF-DNVG----------GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred EEEE-ECCC----------HHHHHHHHHHhccCCEEEEEC
Confidence 9887 4322 145678889999999998743
No 343
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=91.87 E-value=1.8 Score=41.64 Aligned_cols=100 Identities=19% Similarity=0.204 Sum_probs=60.3
Q ss_pred CCCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhC-CCCCcc
Q 019187 125 PNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV-PEGTYD 202 (345)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~-~~~~yD 202 (345)
....+||+.|+|. |..+..+++..+...|.+++.+++-.+.++++ .. +.-+.....|..+.+.+. ..+.+|
T Consensus 171 ~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~-ga------~~~i~~~~~~~~~~l~~~~~~~~~d 243 (351)
T cd08233 171 KPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL-GA------TIVLDPTEVDVVAEVRKLTGGGGVD 243 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-CC------CEEECCCccCHHHHHHHHhCCCCCC
Confidence 3467899998643 33445566665555889999888888888763 21 111111222333333322 234599
Q ss_pred EEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 203 AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 203 vIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
+|+-.... ...++.+.++|+++|.++.-.
T Consensus 244 ~vid~~g~----------~~~~~~~~~~l~~~G~~v~~g 272 (351)
T cd08233 244 VSFDCAGV----------QATLDTAIDALRPRGTAVNVA 272 (351)
T ss_pred EEEECCCC----------HHHHHHHHHhccCCCEEEEEc
Confidence 88843221 245788889999999988754
No 344
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=91.75 E-value=0.6 Score=44.26 Aligned_cols=104 Identities=17% Similarity=0.258 Sum_probs=60.6
Q ss_pred CceEEEEeccc--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccc----cc-cC-CCC-------CCEEEEEechHh
Q 019187 127 PKKVLVIGGGD--GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPD----VA-VG-FED-------PRVTLHIGDGVA 191 (345)
Q Consensus 127 ~~~VL~IG~G~--G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~----~~-~~-~~~-------~rv~v~~~D~~~ 191 (345)
-++|.+||+|. ..++..+++. ..+|+++|.+++.++.+++.+.. .. .+ +.. .++. ...|. +
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~-~ 79 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAA--GMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIR-CTTNL-E 79 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceE-eeCCH-H
Confidence 36899999995 3355555655 35899999999888765543221 10 00 000 0111 22232 2
Q ss_pred HHhhCCCCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEeccch
Q 019187 192 FLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESI 244 (345)
Q Consensus 192 ~l~~~~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s~ 244 (345)
-+ ..-|+||...+..... ...+|+.+...++++.+++.++.+.
T Consensus 80 ~~-----~~aD~Vieav~e~~~~-----k~~v~~~l~~~~~~~~il~s~tS~i 122 (295)
T PLN02545 80 EL-----RDADFIIEAIVESEDL-----KKKLFSELDRICKPSAILASNTSSI 122 (295)
T ss_pred Hh-----CCCCEEEEcCccCHHH-----HHHHHHHHHhhCCCCcEEEECCCCC
Confidence 22 2359999765532111 2467888888899988887665443
No 345
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=91.74 E-value=1.3 Score=41.51 Aligned_cols=114 Identities=21% Similarity=0.276 Sum_probs=55.7
Q ss_pred hHHHHHHHhcccc--cCCCCceEEEEeccch--H-HHHHHHhc--CCCcEEEEEECCHHHHHHHHhcccccccCCCCCCE
Q 019187 110 CAYQEMITHLPLC--SIPNPKKVLVIGGGDG--G-VLREVSRH--SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRV 182 (345)
Q Consensus 110 ~~Y~e~l~~l~l~--~~~~~~~VL~IG~G~G--~-~~~~ll~~--~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv 182 (345)
..|.++...+.-. ..|...|||-+|.|+- . -+..++|+ |...-++-.||.+-+ .| .-
T Consensus 43 ~KYtQLCqYln~~tlaVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~v---------------SD-a~ 106 (299)
T PF06460_consen 43 AKYTQLCQYLNKTTLAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYV---------------SD-AD 106 (299)
T ss_dssp HHHHHHHHHHTTS-----TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B----------------S-SS
T ss_pred HHHHHHHHHhccccEeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhc---------------cc-cC
Confidence 4577766555322 2355679999998762 2 23334553 444444455554322 12 23
Q ss_pred EEEEechHhHHhhCCCCCccEEEEcCCCCCCC-------ccccCcHHHHHHHHhccCCCcEEEEecc
Q 019187 183 TLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGP-------AQELFEKPFFESVAKALRPGGVVSTQAE 242 (345)
Q Consensus 183 ~v~~~D~~~~l~~~~~~~yDvIi~D~~~p~~~-------~~~l~t~ef~~~v~r~LkpgGvlv~~~~ 242 (345)
..+.+|...+.. +.++|+||.|..++... ...-|-.-+..-++..|+-||.+++...
T Consensus 107 ~~~~~Dc~t~~~---~~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiT 170 (299)
T PF06460_consen 107 QSIVGDCRTYMP---PDKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKIT 170 (299)
T ss_dssp EEEES-GGGEEE---SS-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred CceeccccccCC---CCcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEee
Confidence 567789888754 68999999999975422 1122222344555788999999888653
No 346
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=91.72 E-value=2.4 Score=40.99 Aligned_cols=123 Identities=20% Similarity=0.189 Sum_probs=76.2
Q ss_pred CceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCC-CccEEE
Q 019187 127 PKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEG-TYDAVI 205 (345)
Q Consensus 127 ~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~-~yDvIi 205 (345)
..++++|-||.|++..-+.... .+-+.++|||+..++.-+.+++. ..++..|..++..+.-.. .+|+|+
T Consensus 3 ~~~~idLFsG~GG~~lGf~~ag-f~~~~a~Eid~~a~~ty~~n~~~---------~~~~~~di~~~~~~~~~~~~~Dvli 72 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAG-FEIVFANEIDPPAVATYKANFPH---------GDIILGDIKELDGEALRKSDVDVLI 72 (328)
T ss_pred CceEEeeccCCchHHHHHHhcC-CeEEEEEecCHHHHHHHHHhCCC---------CceeechHhhcChhhccccCCCEEE
Confidence 3589999999999988777663 66788999999999999998863 346667766654322122 789999
Q ss_pred EcCCCCC----CC-------ccccCcHHHHHHHHhccCCCcEEEEeccchhhh-hhHHHHHHHHHHhh
Q 019187 206 VDSSDPI----GP-------AQELFEKPFFESVAKALRPGGVVSTQAESIWLH-MHIIEDIVANCRQI 261 (345)
Q Consensus 206 ~D~~~p~----~~-------~~~l~t~ef~~~v~r~LkpgGvlv~~~~s~~~~-~~~~~~i~~~l~~~ 261 (345)
.-++... +. -..| -.++ ..+...++|.-+++=|....... ...+..+.+.|++.
T Consensus 73 gGpPCQ~FS~aG~r~~~~D~R~~L-~~~~-~r~I~~~~P~~fv~ENV~gl~~~~~~~~~~i~~~L~~~ 138 (328)
T COG0270 73 GGPPCQDFSIAGKRRGYDDPRGSL-FLEF-IRLIEQLRPKFFVLENVKGLLSSKGQTFDEIKKELEEL 138 (328)
T ss_pred eCCCCcchhhcCcccCCcCcccee-eHHH-HHHHHhhCCCEEEEecCchHHhcCchHHHHHHHHHHHc
Confidence 7655422 11 1122 2344 44556688844444444333222 23555666666553
No 347
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=91.66 E-value=1.7 Score=41.54 Aligned_cols=100 Identities=22% Similarity=0.302 Sum_probs=60.3
Q ss_pred CCCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEec----hHhHHhhCCCC
Q 019187 125 PNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGD----GVAFLKAVPEG 199 (345)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D----~~~~l~~~~~~ 199 (345)
....+||+.|+|. |..+.++++..+...|+++.-+++-.+.+++. .. +.-+.....+ ..+........
T Consensus 161 ~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~------~~vi~~~~~~~~~~~~~~~~~~~~~ 233 (343)
T cd05285 161 RPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL-GA------THTVNVRTEDTPESAEKIAELLGGK 233 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CC------cEEeccccccchhHHHHHHHHhCCC
Confidence 4567999987655 55666778876665588888888777777663 21 1001111112 11122222245
Q ss_pred CccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 200 TYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 200 ~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
.+|+|+-.... ....+...++|+++|.++...
T Consensus 234 ~~d~vld~~g~----------~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 234 GPDVVIECTGA----------ESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred CCCEEEECCCC----------HHHHHHHHHHhhcCCEEEEEc
Confidence 69988843221 236788899999999998643
No 348
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=91.64 E-value=1.7 Score=42.32 Aligned_cols=100 Identities=16% Similarity=0.164 Sum_probs=60.9
Q ss_pred CCCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEe--chHhHHhhCCCCCc
Q 019187 125 PNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIG--DGVAFLKAVPEGTY 201 (345)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~--D~~~~l~~~~~~~y 201 (345)
....+||++|+|. |..+..+++..+..+|++++.+++-.+.+++. .. +.-+..... |..+.+.+...+.+
T Consensus 185 ~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~l-Ga------~~~i~~~~~~~~~~~~v~~~~~~g~ 257 (368)
T cd08300 185 EPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKF-GA------TDCVNPKDHDKPIQQVLVEMTDGGV 257 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CC------CEEEcccccchHHHHHHHHHhCCCC
Confidence 3567999998654 44455577776655799999999988888763 21 101111111 23333433223479
Q ss_pred cEEEEcCCCCCCCccccCcHHHHHHHHhccCCC-cEEEEec
Q 019187 202 DAVIVDSSDPIGPAQELFEKPFFESVAKALRPG-GVVSTQA 241 (345)
Q Consensus 202 DvIi~D~~~p~~~~~~l~t~ef~~~v~r~Lkpg-Gvlv~~~ 241 (345)
|+|+ |... ....++...+.|+++ |.++.-.
T Consensus 258 d~vi-d~~g---------~~~~~~~a~~~l~~~~G~~v~~g 288 (368)
T cd08300 258 DYTF-ECIG---------NVKVMRAALEACHKGWGTSVIIG 288 (368)
T ss_pred cEEE-ECCC---------ChHHHHHHHHhhccCCCeEEEEc
Confidence 9887 3321 124677788899987 9888643
No 349
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=91.58 E-value=0.75 Score=43.56 Aligned_cols=100 Identities=13% Similarity=0.334 Sum_probs=58.7
Q ss_pred ceEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhcccc-------c-ccC-CCC-------CCEEEEEech
Q 019187 128 KKVLVIGGGDGG--VLREVSRHSSVEKIDICEIDKMVVDVSKQFFPD-------V-AVG-FED-------PRVTLHIGDG 189 (345)
Q Consensus 128 ~~VL~IG~G~G~--~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~-------~-~~~-~~~-------~rv~v~~~D~ 189 (345)
++|.+||+|.=+ ++..++++ ..+|+++|.+++.++.+++.+.. . ..+ ... .++... .|.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~ 80 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART--GYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSY 80 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCH
Confidence 689999999633 44445555 34899999999998876543221 0 000 000 112221 221
Q ss_pred HhHHhhCCCCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 190 VAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 190 ~~~l~~~~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
+-+ ...|+||.-.+.... ...++++.+.+.++++.+++.++
T Consensus 81 -~~~-----~~aDlVieav~e~~~-----~k~~~~~~l~~~~~~~~il~S~t 121 (291)
T PRK06035 81 -ESL-----SDADFIVEAVPEKLD-----LKRKVFAELERNVSPETIIASNT 121 (291)
T ss_pred -HHh-----CCCCEEEEcCcCcHH-----HHHHHHHHHHhhCCCCeEEEEcC
Confidence 111 346999976543211 13578888999999988887654
No 350
>PRK11524 putative methyltransferase; Provisional
Probab=91.58 E-value=0.34 Score=45.94 Aligned_cols=57 Identities=14% Similarity=-0.022 Sum_probs=45.1
Q ss_pred HHHHhcccccCCCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccc
Q 019187 114 EMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPD 172 (345)
Q Consensus 114 e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~ 172 (345)
+++..+-.........|||--+|+|.++..+.+. ..+..++|++++.+++|++.+..
T Consensus 196 ~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 196 ALLKRIILASSNPGDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHh
Confidence 4444443333455678999999999999988877 57899999999999999998753
No 351
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=91.52 E-value=1.5 Score=42.32 Aligned_cols=100 Identities=23% Similarity=0.309 Sum_probs=60.1
Q ss_pred CCCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEE---echHhHHhhC-CCC
Q 019187 125 PNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHI---GDGVAFLKAV-PEG 199 (345)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~---~D~~~~l~~~-~~~ 199 (345)
....+||++|+|. |..+..+++..+. +|++++.+++-.+.+++. .. +.-+.... .|..+.+.+. ...
T Consensus 165 ~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~~-Ga------~~~i~~~~~~~~~~~~~~~~~t~~~ 236 (349)
T TIGR03201 165 KKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKGF-GA------DLTLNPKDKSAREVKKLIKAFAKAR 236 (349)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHh-CC------ceEecCccccHHHHHHHHHhhcccC
Confidence 3467999999865 5566667777655 799999999988888763 31 00111111 1233333322 123
Q ss_pred CccE---EEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 200 TYDA---VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 200 ~yDv---Ii~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
.+|. +++|.... ...++.+.++|++||.++...
T Consensus 237 g~d~~~d~v~d~~g~---------~~~~~~~~~~l~~~G~iv~~G 272 (349)
T TIGR03201 237 GLRSTGWKIFECSGS---------KPGQESALSLLSHGGTLVVVG 272 (349)
T ss_pred CCCCCcCEEEECCCC---------hHHHHHHHHHHhcCCeEEEEC
Confidence 4552 34454421 356677888999999998754
No 352
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=91.51 E-value=1.8 Score=43.50 Aligned_cols=87 Identities=15% Similarity=0.188 Sum_probs=55.2
Q ss_pred CCceEEEEeccchH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 126 NPKKVLVIGGGDGG-VLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 126 ~~~~VL~IG~G~G~-~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
..++|+++|+|.=+ ....+++..+. +|+++|+|+.-.+.|++. . + +.. +..+.+ ...|+|
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~~-G-----~-----~~~--~~~e~v-----~~aDVV 261 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAME-G-----Y-----EVM--TMEEAV-----KEGDIF 261 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHhc-C-----C-----EEc--cHHHHH-----cCCCEE
Confidence 46799999999844 34445666554 799999999888887763 1 1 111 112222 246988
Q ss_pred EEcCCCCCCCccccCcHHHHHH-HHhccCCCcEEEEec
Q 019187 205 IVDSSDPIGPAQELFEKPFFES-VAKALRPGGVVSTQA 241 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~-v~r~LkpgGvlv~~~ 241 (345)
|.... +...+.. ..+.+++||+++.-+
T Consensus 262 I~atG----------~~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 262 VTTTG----------NKDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred EECCC----------CHHHHHHHHHhcCCCCcEEEEeC
Confidence 84321 1244544 478999999987654
No 353
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.49 E-value=0.59 Score=44.26 Aligned_cols=103 Identities=19% Similarity=0.266 Sum_probs=61.2
Q ss_pred ceEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhccccc------ccCCCC-------CCEEEEEechHhH
Q 019187 128 KKVLVIGGGDGG--VLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDV------AVGFED-------PRVTLHIGDGVAF 192 (345)
Q Consensus 128 ~~VL~IG~G~G~--~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~------~~~~~~-------~rv~v~~~D~~~~ 192 (345)
++|.+||+|.-+ ++..+++. ..+|+++|.+++.++.+.+.+... ...+.. .++++. .|. +.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~~ 80 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA--GYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDL-ED 80 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCH-HH
Confidence 689999999654 44445544 358999999999887765432211 000110 123322 232 22
Q ss_pred HhhCCCCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEeccch
Q 019187 193 LKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESI 244 (345)
Q Consensus 193 l~~~~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s~ 244 (345)
+ ...|+||.-.+.... ....+|+.+...++++.+++.++.+.
T Consensus 81 ~-----~~aD~Vieavpe~~~-----~k~~~~~~l~~~~~~~~ii~s~ts~~ 122 (292)
T PRK07530 81 L-----ADCDLVIEAATEDET-----VKRKIFAQLCPVLKPEAILATNTSSI 122 (292)
T ss_pred h-----cCCCEEEEcCcCCHH-----HHHHHHHHHHhhCCCCcEEEEcCCCC
Confidence 2 346999976543211 13477888999999999888665443
No 354
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=91.47 E-value=0.59 Score=42.05 Aligned_cols=34 Identities=29% Similarity=0.329 Sum_probs=24.2
Q ss_pred CCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECC
Q 019187 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEID 159 (345)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid 159 (345)
...+||++|+|+ |......+...++.+++.+|-|
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 457999999985 4433333334468899999998
No 355
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=91.41 E-value=1.7 Score=41.37 Aligned_cols=98 Identities=23% Similarity=0.289 Sum_probs=59.4
Q ss_pred CCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhC-CCCCccE
Q 019187 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV-PEGTYDA 203 (345)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~-~~~~yDv 203 (345)
...+||+.|+|. |..+..+++..+...|.+++.++...+.+++. .. +.-+.....+..+.+... +.+.+|+
T Consensus 167 ~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~-g~------~~vi~~~~~~~~~~i~~~~~~~~~d~ 239 (347)
T cd05278 167 PGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA-GA------TDIINPKNGDIVEQILELTGGRGVDC 239 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh-CC------cEEEcCCcchHHHHHHHHcCCCCCcE
Confidence 457899866542 55666677775545788888888887777753 11 111111222333333332 2356998
Q ss_pred EEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEe
Q 019187 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (345)
Q Consensus 204 Ii~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~ 240 (345)
|+ |... ....++.+.+.|+++|.++.-
T Consensus 240 vl-d~~g---------~~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 240 VI-EAVG---------FEETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred EE-EccC---------CHHHHHHHHHHhhcCCEEEEE
Confidence 87 3221 125678888999999998864
No 356
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=91.41 E-value=1.2 Score=42.46 Aligned_cols=97 Identities=25% Similarity=0.412 Sum_probs=59.6
Q ss_pred CCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
...+||+.|+|. |..+..+++..+..+|++++.++...+.+++. .. +.-+.....+...... ..+.+|+|
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~-g~------~~vi~~~~~~~~~~~~--~~~~vd~v 235 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM-GA------DETVNLARDPLAAYAA--DKGDFDVV 235 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CC------CEEEcCCchhhhhhhc--cCCCccEE
Confidence 467899988765 55667777776655789999988888877764 21 0000000111112211 13459988
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
+--... ...++.+.+.|+++|.++.-.
T Consensus 236 ld~~g~----------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 236 FEASGA----------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred EECCCC----------HHHHHHHHHHHhcCCEEEEEe
Confidence 832211 245788899999999998643
No 357
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=91.40 E-value=1.5 Score=42.69 Aligned_cols=99 Identities=14% Similarity=0.165 Sum_probs=60.1
Q ss_pred CCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEE--EechHhHHhhCCCCCcc
Q 019187 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLH--IGDGVAFLKAVPEGTYD 202 (345)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~--~~D~~~~l~~~~~~~yD 202 (345)
...+||+.|+|. |..+..+++..+..+|++++.+++-.+.+++. .. +.-+... ..+..+.+.+...+.+|
T Consensus 185 ~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~-Ga------~~~i~~~~~~~~~~~~v~~~~~~g~d 257 (368)
T TIGR02818 185 EGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL-GA------TDCVNPNDYDKPIQEVIVEITDGGVD 257 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh-CC------CeEEcccccchhHHHHHHHHhCCCCC
Confidence 467999998754 44556677776666899999999988888763 21 1001111 01222323322134689
Q ss_pred EEEEcCCCCCCCccccCcHHHHHHHHhccCCC-cEEEEec
Q 019187 203 AVIVDSSDPIGPAQELFEKPFFESVAKALRPG-GVVSTQA 241 (345)
Q Consensus 203 vIi~D~~~p~~~~~~l~t~ef~~~v~r~Lkpg-Gvlv~~~ 241 (345)
+|+ |... ....+..+.+.|+++ |.++.-.
T Consensus 258 ~vi-d~~G---------~~~~~~~~~~~~~~~~G~~v~~g 287 (368)
T TIGR02818 258 YSF-ECIG---------NVNVMRAALECCHKGWGESIIIG 287 (368)
T ss_pred EEE-ECCC---------CHHHHHHHHHHhhcCCCeEEEEe
Confidence 887 3321 124567778889886 9887644
No 358
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=91.31 E-value=2.3 Score=43.42 Aligned_cols=138 Identities=17% Similarity=0.197 Sum_probs=75.4
Q ss_pred eEEEEeccchHHHHH--HHhcCCCcEEEEEECCHHHHHHHHhcccccc-cCCC-------CCCEEEEEechHhHHhhCCC
Q 019187 129 KVLVIGGGDGGVLRE--VSRHSSVEKIDICEIDKMVVDVSKQFFPDVA-VGFE-------DPRVTLHIGDGVAFLKAVPE 198 (345)
Q Consensus 129 ~VL~IG~G~G~~~~~--ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~-~~~~-------~~rv~v~~~D~~~~l~~~~~ 198 (345)
+|.+||.|-.++... +++.....+|+++|+|++.++..++-...+. .++. ..++.+ ..|..+.+
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~-t~~~~~~i----- 76 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFF-STDVEKHV----- 76 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEE-EcCHHHHH-----
Confidence 689999998776555 4444324579999999999998776432211 0110 001111 12211122
Q ss_pred CCccEEEEcCCCCCC--------CccccCcHHHHHHHHhccCCCcEEEEeccchhhhhhHHHHHHHHHHhhcCCcceEEE
Q 019187 199 GTYDAVIVDSSDPIG--------PAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAW 270 (345)
Q Consensus 199 ~~yDvIi~D~~~p~~--------~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s~~~~~~~~~~i~~~l~~~F~~~v~~~~ 270 (345)
..-|+||+..+.|.. .+..-+-....+.+.+.|++|-++++.+..+-...+.+...+.. .-++ ..+..
T Consensus 77 ~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~---~~~g-~~f~v 152 (473)
T PLN02353 77 AEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTH---NSKG-INFQI 152 (473)
T ss_pred hcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHh---hCCC-CCeEE
Confidence 335888886554432 11111235677788889998888888776665544444333322 1111 23344
Q ss_pred EEEeec
Q 019187 271 TTVPTY 276 (345)
Q Consensus 271 ~~vP~y 276 (345)
.+-|.+
T Consensus 153 ~~~PEr 158 (473)
T PLN02353 153 LSNPEF 158 (473)
T ss_pred EECCCc
Confidence 566766
No 359
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.29 E-value=0.62 Score=44.23 Aligned_cols=102 Identities=16% Similarity=0.254 Sum_probs=62.7
Q ss_pred ceEEEEeccc--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccc------cCCCC-------CCEEEEEechHhH
Q 019187 128 KKVLVIGGGD--GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVA------VGFED-------PRVTLHIGDGVAF 192 (345)
Q Consensus 128 ~~VL~IG~G~--G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~------~~~~~-------~rv~v~~~D~~~~ 192 (345)
++|-+||+|. ++++..+++. .-+|+.+|.+++.++.+++.+...- ..+.. .++++ ..|. +-
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~-~~ 81 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA--GVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDL-GD 81 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCH-HH
Confidence 5899999995 4455556665 4589999999999888665433210 00110 12322 2332 22
Q ss_pred HhhCCCCCccEEEEcCCCCCCCccccCcHHHHHHHHhcc-CCCcEEEEeccc
Q 019187 193 LKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKAL-RPGGVVSTQAES 243 (345)
Q Consensus 193 l~~~~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~L-kpgGvlv~~~~s 243 (345)
+ ..-|+||-..++.. -...++|..+.+.+ +|+.+++.++.+
T Consensus 82 ~-----~~~d~ViEav~E~~-----~~K~~l~~~l~~~~~~~~~il~snTS~ 123 (286)
T PRK07819 82 F-----ADRQLVIEAVVEDE-----AVKTEIFAELDKVVTDPDAVLASNTSS 123 (286)
T ss_pred h-----CCCCEEEEecccCH-----HHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 2 33588886544321 11457888999988 888888887644
No 360
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=91.28 E-value=2.7 Score=36.69 Aligned_cols=94 Identities=14% Similarity=0.238 Sum_probs=56.0
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
...+|+.|||=+-.....- ...+..++...|+|...-....+.|-.. .++.| .+..... .++||+||
T Consensus 25 ~~~~iaclstPsl~~~l~~-~~~~~~~~~Lle~D~RF~~~~~~~F~fy--D~~~p---------~~~~~~l-~~~~d~vv 91 (162)
T PF10237_consen 25 DDTRIACLSTPSLYEALKK-ESKPRIQSFLLEYDRRFEQFGGDEFVFY--DYNEP---------EELPEEL-KGKFDVVV 91 (162)
T ss_pred CCCEEEEEeCcHHHHHHHh-hcCCCccEEEEeecchHHhcCCcceEEC--CCCCh---------hhhhhhc-CCCceEEE
Confidence 4579999999875544332 1334568999999998755432212111 01111 1222233 57899999
Q ss_pred EcCCCCCCCccccCcHHHH----HHHHhccCCCcEEEEe
Q 019187 206 VDSSDPIGPAQELFEKPFF----ESVAKALRPGGVVSTQ 240 (345)
Q Consensus 206 ~D~~~p~~~~~~l~t~ef~----~~v~r~LkpgGvlv~~ 240 (345)
+|++- .+.+.+ +.++.++++++.++.-
T Consensus 92 ~DPPF--------l~~ec~~k~a~ti~~L~k~~~kii~~ 122 (162)
T PF10237_consen 92 IDPPF--------LSEECLTKTAETIRLLLKPGGKIILC 122 (162)
T ss_pred ECCCC--------CCHHHHHHHHHHHHHHhCccceEEEe
Confidence 99764 133444 5556667888887764
No 361
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=91.22 E-value=6.9 Score=34.20 Aligned_cols=108 Identities=16% Similarity=0.179 Sum_probs=60.5
Q ss_pred CCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
..++|.+||+|. |......++..+ .+|.++|........+... .+ ...+..+.++. .|+|
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~fG-~~V~~~d~~~~~~~~~~~~-----------~~--~~~~l~ell~~-----aDiv 95 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAFG-MRVIGYDRSPKPEEGADEF-----------GV--EYVSLDELLAQ-----ADIV 95 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHHHHHHHT-----------TE--EESSHHHHHHH------SEE
T ss_pred CCCEEEEEEEcCCcCeEeeeeecCC-ceeEEecccCChhhhcccc-----------cc--eeeehhhhcch-----hhhh
Confidence 468999999875 333333444454 5999999998765522221 12 23355666654 4999
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEeccchhhhhhHHHHHHHHHHh
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQ 260 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s~~~~~~~~~~i~~~l~~ 260 (345)
++..+... ....++..++|+ .||+|.+||--+.....+. ..+++.+++
T Consensus 96 ~~~~plt~-~T~~li~~~~l~----~mk~ga~lvN~aRG~~vde---~aL~~aL~~ 143 (178)
T PF02826_consen 96 SLHLPLTP-ETRGLINAEFLA----KMKPGAVLVNVARGELVDE---DALLDALES 143 (178)
T ss_dssp EE-SSSST-TTTTSBSHHHHH----TSTTTEEEEESSSGGGB-H---HHHHHHHHT
T ss_pred hhhhcccc-ccceeeeeeeee----ccccceEEEeccchhhhhh---hHHHHHHhh
Confidence 98765321 123566776665 5777776664433333332 245555654
No 362
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=91.17 E-value=0.38 Score=43.20 Aligned_cols=114 Identities=18% Similarity=0.071 Sum_probs=61.8
Q ss_pred CCCCceEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhcccccccC---CCCCCEEEEEechHhHHhhCCCC
Q 019187 124 IPNPKKVLVIGGGDGGVLREVSRHS-SVEKIDICEIDKMVVDVSKQFFPDVAVG---FEDPRVTLHIGDGVAFLKAVPEG 199 (345)
Q Consensus 124 ~~~~~~VL~IG~G~G~~~~~ll~~~-~~~~V~~VEid~~vi~~ar~~~~~~~~~---~~~~rv~v~~~D~~~~l~~~~~~ 199 (345)
......|+|+=-|+|..++-++.+- +...|+.+-.++ +...+..+-+..... -...+++.+-.+...+. +.+
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e-~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~---~pq 121 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAE-LTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG---APQ 121 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchh-hcccccchhhhhhhhhhhhhhhhhhhhCCcccccC---CCC
Confidence 3455689999999999999998863 223555543332 211111111110000 00123444444433332 245
Q ss_pred CccEEEEcCCCCCCCc---cccCcHHHHHHHHhccCCCcEEEEec
Q 019187 200 TYDAVIVDSSDPIGPA---QELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 200 ~yDvIi~D~~~p~~~~---~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
.-|+++..+.++.... ..-+...+++.+.++|||||++++..
T Consensus 122 ~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~d 166 (238)
T COG4798 122 KLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVED 166 (238)
T ss_pred cccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEe
Confidence 5677665444433211 11224689999999999999998854
No 363
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=91.05 E-value=0.86 Score=43.04 Aligned_cols=35 Identities=20% Similarity=0.384 Sum_probs=27.1
Q ss_pred CCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCH
Q 019187 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDK 160 (345)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~ 160 (345)
...+||++|+|. |+.+.+.+...++.+++.+|.|.
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 456999999885 66666655556789999999884
No 364
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=90.97 E-value=1.4 Score=42.06 Aligned_cols=90 Identities=19% Similarity=0.215 Sum_probs=54.4
Q ss_pred ceEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 128 KKVLVIGGGDGG--VLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 128 ~~VL~IG~G~G~--~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
.+|.+||+|.-+ +++.+.+.....+|+++|.+++..+.+++. . ..+ . ...+..+.+ +..|+||
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~-g-----~~~---~-~~~~~~~~~-----~~aDvVi 71 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL-G-----LGD---R-VTTSAAEAV-----KGADLVI 71 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC-C-----CCc---e-ecCCHHHHh-----cCCCEEE
Confidence 589999988733 344444442224899999999887777652 1 010 1 122322222 3479999
Q ss_pred EcCCCCCCCccccCcHHHHHHHHhccCCCcEEEE
Q 019187 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVST 239 (345)
Q Consensus 206 ~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~ 239 (345)
+-.+... ..++++.+...++++.+++.
T Consensus 72 iavp~~~-------~~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 72 LCVPVGA-------SGAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred ECCCHHH-------HHHHHHHHHhhCCCCCEEEe
Confidence 7664321 24667777788888876653
No 365
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=90.87 E-value=0.75 Score=44.86 Aligned_cols=35 Identities=29% Similarity=0.492 Sum_probs=24.7
Q ss_pred CCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCH
Q 019187 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDK 160 (345)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~ 160 (345)
..++||+||+|. |......+...++.+++.||-|.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 356899999985 44333333344688999999985
No 366
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=90.84 E-value=2.3 Score=40.73 Aligned_cols=99 Identities=15% Similarity=0.100 Sum_probs=62.5
Q ss_pred CCCceEEEEec--cchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEE-echHhHHhhCCCCCc
Q 019187 125 PNPKKVLVIGG--GDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHI-GDGVAFLKAVPEGTY 201 (345)
Q Consensus 125 ~~~~~VL~IG~--G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~-~D~~~~l~~~~~~~y 201 (345)
....+||+.|+ |-|..+..+++..+. +|+++..+++-.+.+++.+.. +.-+.... .|..+.+.....+.+
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~~~lGa------~~vi~~~~~~~~~~~i~~~~~~gv 222 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLKNKLGF------DDAFNYKEEPDLDAALKRYFPNGI 222 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCC------ceeEEcCCcccHHHHHHHhCCCCc
Confidence 35679999985 556677778887655 688888888888888764432 11111111 133333333223569
Q ss_pred cEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 202 DAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 202 DvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
|+|+ |... ...++.+.++|+++|.++.-.
T Consensus 223 d~v~-d~~g----------~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 223 DIYF-DNVG----------GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred EEEE-ECCC----------HHHHHHHHHHhccCcEEEEec
Confidence 9887 4322 145778889999999998643
No 367
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=90.84 E-value=0.55 Score=45.09 Aligned_cols=106 Identities=22% Similarity=0.299 Sum_probs=62.7
Q ss_pred CceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcc-------------cccc---cC--CC----------
Q 019187 127 PKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFF-------------PDVA---VG--FE---------- 178 (345)
Q Consensus 127 ~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~-------------~~~~---~~--~~---------- 178 (345)
.-+||+=|||.|.++..++.... ++-+-|.+--|+=.. .|. |..+ .. .+
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~--~~qGNEfSy~Mli~S-~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD 227 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGF--KCQGNEFSYFMLICS-SFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD 227 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcc--cccccHHHHHHHHHH-HHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence 45899999999999999998743 334446665443222 110 1110 00 00
Q ss_pred ---------CCCEEEEEechHhHHhhC-CCCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEE
Q 019187 179 ---------DPRVTLHIGDGVAFLKAV-PEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVST 239 (345)
Q Consensus 179 ---------~~rv~v~~~D~~~~l~~~-~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~ 239 (345)
...+.+..||..+..... ..+.||+|+...+-. .+.. -.++++.+.++|+|||+.+-
T Consensus 228 ~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID--Ta~N--ileYi~tI~~iLk~GGvWiN 294 (369)
T KOG2798|consen 228 IHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID--TAHN--ILEYIDTIYKILKPGGVWIN 294 (369)
T ss_pred ccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEee--chHH--HHHHHHHHHHhccCCcEEEe
Confidence 112344557755554432 135799998753321 1111 25899999999999999874
No 368
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=90.76 E-value=2.3 Score=41.31 Aligned_cols=100 Identities=14% Similarity=0.163 Sum_probs=59.8
Q ss_pred CCCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEE--echHhHHhhCCCCCc
Q 019187 125 PNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHI--GDGVAFLKAVPEGTY 201 (345)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~--~D~~~~l~~~~~~~y 201 (345)
....+||++|+|. |..+..+++..+..+|++++.+++-.+.++++ .. +.-+.... .+..+.+.....+.+
T Consensus 183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~-ga------~~~i~~~~~~~~~~~~~~~~~~~g~ 255 (365)
T cd08277 183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEF-GA------TDFINPKDSDKPVSEVIREMTGGGV 255 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CC------CcEeccccccchHHHHHHHHhCCCC
Confidence 3467999998654 33445567776666899999999888888763 21 10011111 112233333223569
Q ss_pred cEEEEcCCCCCCCccccCcHHHHHHHHhccCCC-cEEEEec
Q 019187 202 DAVIVDSSDPIGPAQELFEKPFFESVAKALRPG-GVVSTQA 241 (345)
Q Consensus 202 DvIi~D~~~p~~~~~~l~t~ef~~~v~r~Lkpg-Gvlv~~~ 241 (345)
|+|+ |... ....+....+.|+++ |.++.-.
T Consensus 256 d~vi-d~~g---------~~~~~~~~~~~l~~~~G~~v~~g 286 (365)
T cd08277 256 DYSF-ECTG---------NADLMNEALESTKLGWGVSVVVG 286 (365)
T ss_pred CEEE-ECCC---------ChHHHHHHHHhcccCCCEEEEEc
Confidence 9888 3221 124567788889885 9888754
No 369
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=90.68 E-value=1.6 Score=44.55 Aligned_cols=105 Identities=15% Similarity=0.208 Sum_probs=58.8
Q ss_pred CCCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccE
Q 019187 124 IPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (345)
Q Consensus 124 ~~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDv 203 (345)
...-++|+|+.+|.|+++..|...+ |.+.-.-|. .....++.+ ++. .+-=+.-|-.+-+... ..+||+
T Consensus 363 ~~~iRNVMDMnAg~GGFAAAL~~~~----VWVMNVVP~---~~~ntL~vI---ydR-GLIG~yhDWCE~fsTY-PRTYDL 430 (506)
T PF03141_consen 363 WGRIRNVMDMNAGYGGFAAALIDDP----VWVMNVVPV---SGPNTLPVI---YDR-GLIGVYHDWCEAFSTY-PRTYDL 430 (506)
T ss_pred ccceeeeeeecccccHHHHHhccCC----ceEEEeccc---CCCCcchhh---hhc-ccchhccchhhccCCC-Ccchhh
Confidence 3456899999999999999998774 333222121 111112211 111 1111112322223333 688999
Q ss_pred EEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 204 Ii~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
|-.+.-..... ...--...+-++-|+|+|+|.+++..
T Consensus 431 lHA~~lfs~~~-~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 431 LHADGLFSLYK-DRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred eehhhhhhhhc-ccccHHHHHHHhHhhcCCCceEEEec
Confidence 98764221111 11113577889999999999999864
No 370
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=90.67 E-value=2.6 Score=42.29 Aligned_cols=113 Identities=18% Similarity=0.201 Sum_probs=63.9
Q ss_pred ceEEEEeccchHHH--HHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhh----------
Q 019187 128 KKVLVIGGGDGGVL--REVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKA---------- 195 (345)
Q Consensus 128 ~~VL~IG~G~G~~~--~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~---------- 195 (345)
++|.+||.|-.+.. ..+++. .-+|+++|+|++.++..++-.... ..+ +..+.+++
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~--G~~V~~~D~~~~~v~~l~~g~~~~----~e~-------~l~~~l~~~~~~g~l~~~ 70 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASR--QKQVIGVDINQHAVDTINRGEIHI----VEP-------DLDMVVKTAVEGGYLRAT 70 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhC--CCEEEEEeCCHHHHHHHHCCCCCc----CCC-------CHHHHHHHHhhcCceeee
Confidence 58999999965543 334554 358999999999888654321110 011 11111110
Q ss_pred CCCCCccEEEEcCCCCCCC---ccccCcHHHHHHHHhccCCCcEEEEeccchhhhhhHHHH
Q 019187 196 VPEGTYDAVIVDSSDPIGP---AQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIED 253 (345)
Q Consensus 196 ~~~~~yDvIi~D~~~p~~~---~~~l~t~ef~~~v~r~LkpgGvlv~~~~s~~~~~~~~~~ 253 (345)
...+.-|+||+..+.|... +..-+-.+..+.+.+.|++|-+++..++.+....+.+..
T Consensus 71 ~~~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~ 131 (415)
T PRK11064 71 TTPEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAE 131 (415)
T ss_pred cccccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHH
Confidence 0013579999877765321 111112455678888999988888877655444444433
No 371
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=90.38 E-value=2.3 Score=44.19 Aligned_cols=96 Identities=13% Similarity=0.141 Sum_probs=61.5
Q ss_pred ceEEEEeccchHHHHHHHhc--CCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHh--HHhhCCCCCccE
Q 019187 128 KKVLVIGGGDGGVLREVSRH--SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVA--FLKAVPEGTYDA 203 (345)
Q Consensus 128 ~~VL~IG~G~G~~~~~ll~~--~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~--~l~~~~~~~yDv 203 (345)
.+|+++|+|. .++.+++. ....+++++|.|++.++.+++. ...++++|+.+ .+++..-++.|.
T Consensus 418 ~hiiI~G~G~--~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~-----------g~~~i~GD~~~~~~L~~a~i~~a~~ 484 (558)
T PRK10669 418 NHALLVGYGR--VGSLLGEKLLAAGIPLVVIETSRTRVDELRER-----------GIRAVLGNAANEEIMQLAHLDCARW 484 (558)
T ss_pred CCEEEECCCh--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC-----------CCeEEEcCCCCHHHHHhcCccccCE
Confidence 5899999886 33333332 1134799999999988888752 36788999865 345443478998
Q ss_pred EEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEeccc
Q 019187 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAES 243 (345)
Q Consensus 204 Ii~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s 243 (345)
+++...+... ....-.+.+.+.|+-.++..+.+
T Consensus 485 viv~~~~~~~-------~~~iv~~~~~~~~~~~iiar~~~ 517 (558)
T PRK10669 485 LLLTIPNGYE-------AGEIVASAREKRPDIEIIARAHY 517 (558)
T ss_pred EEEEcCChHH-------HHHHHHHHHHHCCCCeEEEEECC
Confidence 8876554311 12233445666788888876644
No 372
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=90.31 E-value=1 Score=46.31 Aligned_cols=105 Identities=14% Similarity=0.228 Sum_probs=65.1
Q ss_pred CCceEEEEeccch--HHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccc-----cC-CCC-------CCEEEEEechH
Q 019187 126 NPKKVLVIGGGDG--GVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVA-----VG-FED-------PRVTLHIGDGV 190 (345)
Q Consensus 126 ~~~~VL~IG~G~G--~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~-----~~-~~~-------~rv~v~~~D~~ 190 (345)
.-++|-+||+|.- +++..+++. .-.|++.|.+++.++.++++....- .+ +.. .+++.. .|..
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~a--G~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~~ 82 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQA--GHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPV-EALA 82 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHH
Confidence 4578999999953 455556665 3589999999999988755433210 01 100 123332 2322
Q ss_pred hHHhhCCCCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEeccch
Q 019187 191 AFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESI 244 (345)
Q Consensus 191 ~~l~~~~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s~ 244 (345)
+ + ..-|+||--.++.... ...+|+.+.+.++++.++++++.+.
T Consensus 83 ~-~-----~~aDlViEav~E~~~v-----K~~vf~~l~~~~~~~ailasntStl 125 (507)
T PRK08268 83 D-L-----ADCDLVVEAIVERLDV-----KQALFAQLEAIVSPDCILATNTSSL 125 (507)
T ss_pred H-h-----CCCCEEEEcCcccHHH-----HHHHHHHHHhhCCCCcEEEECCCCC
Confidence 1 2 2469999765543221 3567888888889998888776543
No 373
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=90.24 E-value=1.1 Score=38.74 Aligned_cols=78 Identities=17% Similarity=0.216 Sum_probs=44.1
Q ss_pred HHHhcccccCCCCceEEEEeccchHH--HHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhH
Q 019187 115 MITHLPLCSIPNPKKVLVIGGGDGGV--LREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAF 192 (345)
Q Consensus 115 ~l~~l~l~~~~~~~~VL~IG~G~G~~--~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~ 192 (345)
||.++|+...-+.++||+||||.=+. ++.+++. ..+|+.|+ |+..+..++ + +.+++.... |
T Consensus 1 ~~~~~P~~l~l~~~~vlVvGGG~va~rka~~Ll~~--ga~V~VIs--p~~~~~l~~-l---------~~i~~~~~~---~ 63 (157)
T PRK06719 1 MYNMYPLMFNLHNKVVVIIGGGKIAYRKASGLKDT--GAFVTVVS--PEICKEMKE-L---------PYITWKQKT---F 63 (157)
T ss_pred CCcccceEEEcCCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEc--CccCHHHHh-c---------cCcEEEecc---c
Confidence 34567776666789999999997554 3335554 45788884 444333332 1 133443222 2
Q ss_pred HhhCCCCCccEEEEcCCC
Q 019187 193 LKAVPEGTYDAVIVDSSD 210 (345)
Q Consensus 193 l~~~~~~~yDvIi~D~~~ 210 (345)
-+. .-..+|+|++...+
T Consensus 64 ~~~-dl~~a~lViaaT~d 80 (157)
T PRK06719 64 SND-DIKDAHLIYAATNQ 80 (157)
T ss_pred Chh-cCCCceEEEECCCC
Confidence 221 13568999875544
No 374
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=90.23 E-value=0.79 Score=42.30 Aligned_cols=34 Identities=29% Similarity=0.400 Sum_probs=26.1
Q ss_pred CceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCH
Q 019187 127 PKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDK 160 (345)
Q Consensus 127 ~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~ 160 (345)
..+||++|||+ |+...+.+.+.++.+++.+|-|.
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 46899999974 66666655556789999999885
No 375
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=90.15 E-value=2.5 Score=41.04 Aligned_cols=99 Identities=17% Similarity=0.231 Sum_probs=60.4
Q ss_pred CCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
..++||+.|+|. |..+..+++..+...+++++.++.-.+.+++. .. +.-+.....+..+.+.......+|+|
T Consensus 186 ~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~-g~------~~~i~~~~~~~~~~v~~~~~~~~d~v 258 (365)
T cd08278 186 PGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKEL-GA------THVINPKEEDLVAAIREITGGGVDYA 258 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CC------cEEecCCCcCHHHHHHHHhCCCCcEE
Confidence 457899997654 45556677776666799999998888877663 21 00001111122222322214569988
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
+-.... ...+..+.+.|+++|.++...
T Consensus 259 ld~~g~----------~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 259 LDTTGV----------PAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred EECCCC----------cHHHHHHHHHhccCCEEEEeC
Confidence 833211 245778889999999998754
No 376
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=90.09 E-value=2.5 Score=41.07 Aligned_cols=100 Identities=16% Similarity=0.161 Sum_probs=60.1
Q ss_pred CCCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEE--echHhHHhhCCCCCc
Q 019187 125 PNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHI--GDGVAFLKAVPEGTY 201 (345)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~--~D~~~~l~~~~~~~y 201 (345)
....+||+.|+|. |..+..+++..+..+|++++.+++-.+.++++ .. +.-+.... .+..+.+.+...+.+
T Consensus 186 ~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~-Ga------~~~i~~~~~~~~~~~~v~~~~~~~~ 258 (369)
T cd08301 186 KKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKF-GV------TEFVNPKDHDKPVQEVIAEMTGGGV 258 (369)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-CC------ceEEcccccchhHHHHHHHHhCCCC
Confidence 3467999998654 33445567776666899999999988888763 21 10011111 112223333223468
Q ss_pred cEEEEcCCCCCCCccccCcHHHHHHHHhccCCC-cEEEEec
Q 019187 202 DAVIVDSSDPIGPAQELFEKPFFESVAKALRPG-GVVSTQA 241 (345)
Q Consensus 202 DvIi~D~~~p~~~~~~l~t~ef~~~v~r~Lkpg-Gvlv~~~ 241 (345)
|+|+ |... ....+....+.++++ |.++...
T Consensus 259 d~vi-d~~G---------~~~~~~~~~~~~~~~~g~~v~~g 289 (369)
T cd08301 259 DYSF-ECTG---------NIDAMISAFECVHDGWGVTVLLG 289 (369)
T ss_pred CEEE-ECCC---------ChHHHHHHHHHhhcCCCEEEEEC
Confidence 9777 3321 125677788899996 9988754
No 377
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=90.08 E-value=2.8 Score=40.76 Aligned_cols=99 Identities=17% Similarity=0.170 Sum_probs=60.1
Q ss_pred CCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEe--chHhHHhhCCCCCcc
Q 019187 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIG--DGVAFLKAVPEGTYD 202 (345)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~--D~~~~l~~~~~~~yD 202 (345)
...+||+.|+|. |..+..+++..+...|++++.+++-.+.+++ +.. +.-+..... +..+.+.+...+.+|
T Consensus 183 ~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~-~g~------~~~v~~~~~~~~~~~~l~~~~~~~~d 255 (365)
T cd05279 183 PGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQ-LGA------TECINPRDQDKPIVEVLTEMTDGGVD 255 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-hCC------CeecccccccchHHHHHHHHhCCCCc
Confidence 467999997644 3344556777666678899988888888865 321 111111122 333333332235699
Q ss_pred EEEEcCCCCCCCccccCcHHHHHHHHhccC-CCcEEEEec
Q 019187 203 AVIVDSSDPIGPAQELFEKPFFESVAKALR-PGGVVSTQA 241 (345)
Q Consensus 203 vIi~D~~~p~~~~~~l~t~ef~~~v~r~Lk-pgGvlv~~~ 241 (345)
+|+ |... ....+....+.|+ ++|.++...
T Consensus 256 ~vi-d~~g---------~~~~~~~~~~~l~~~~G~~v~~g 285 (365)
T cd05279 256 YAF-EVIG---------SADTLKQALDATRLGGGTSVVVG 285 (365)
T ss_pred EEE-ECCC---------CHHHHHHHHHHhccCCCEEEEEe
Confidence 888 4321 1256778888999 999998653
No 378
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=90.05 E-value=4.6 Score=32.24 Aligned_cols=107 Identities=22% Similarity=0.285 Sum_probs=66.6
Q ss_pred eEEEEeccchHHHH--HHHhcCCCcEEE-EEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 129 KVLVIGGGDGGVLR--EVSRHSSVEKID-ICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 129 ~VL~IG~G~G~~~~--~ll~~~~~~~V~-~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
||.+||+|..+... .+.+..+..+++ ++|.+++-.+.+.+.+. +. ...|..+.+.. ...|+|+
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~----------~~-~~~~~~~ll~~---~~~D~V~ 67 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYG----------IP-VYTDLEELLAD---EDVDAVI 67 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTT----------SE-EESSHHHHHHH---TTESEEE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhc----------cc-chhHHHHHHHh---hcCCEEE
Confidence 78999998765333 244442334554 78999987776655442 22 67777777763 4699999
Q ss_pred EcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEeccchh-hhhhHHHHHHHHHHhh
Q 019187 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIW-LHMHIIEDIVANCRQI 261 (345)
Q Consensus 206 ~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s~~-~~~~~~~~i~~~l~~~ 261 (345)
+..+.. .-++.+.++|+-|--+++. .|. ...+..+++.+..++.
T Consensus 68 I~tp~~----------~h~~~~~~~l~~g~~v~~E--KP~~~~~~~~~~l~~~a~~~ 112 (120)
T PF01408_consen 68 IATPPS----------SHAEIAKKALEAGKHVLVE--KPLALTLEEAEELVEAAKEK 112 (120)
T ss_dssp EESSGG----------GHHHHHHHHHHTTSEEEEE--SSSSSSHHHHHHHHHHHHHH
T ss_pred EecCCc----------chHHHHHHHHHcCCEEEEE--cCCcCCHHHHHHHHHHHHHh
Confidence 876542 2345666667666655543 333 3456667777766653
No 379
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=89.74 E-value=13 Score=37.24 Aligned_cols=87 Identities=17% Similarity=0.169 Sum_probs=51.6
Q ss_pred CCceEEEEeccchH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 126 NPKKVLVIGGGDGG-VLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 126 ~~~~VL~IG~G~G~-~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
..++|+++|+|.-+ .....++..+ .+|+++|.|+.-...++.. + ..+. +..+.+ ...|+|
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~G-a~ViV~d~dp~r~~~A~~~------G-----~~v~--~leeal-----~~aDVV 254 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMG-ARVIVTEVDPIRALEAAMD------G-----FRVM--TMEEAA-----KIGDIF 254 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCc-CEEEEEeCChhhHHHHHhc------C-----CEeC--CHHHHH-----hcCCEE
Confidence 46799999999844 3344556554 4799999999654444321 1 1111 222222 236998
Q ss_pred EEcCCCCCCCccccCcHHHHH-HHHhccCCCcEEEEec
Q 019187 205 IVDSSDPIGPAQELFEKPFFE-SVAKALRPGGVVSTQA 241 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~-~v~r~LkpgGvlv~~~ 241 (345)
|.-.. +...+. .....+++|++++.-+
T Consensus 255 ItaTG----------~~~vI~~~~~~~mK~GailiN~G 282 (406)
T TIGR00936 255 ITATG----------NKDVIRGEHFENMKDGAIVANIG 282 (406)
T ss_pred EECCC----------CHHHHHHHHHhcCCCCcEEEEEC
Confidence 75321 134444 3667899999887654
No 380
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=89.73 E-value=1.7 Score=43.14 Aligned_cols=138 Identities=16% Similarity=0.200 Sum_probs=72.6
Q ss_pred ceEEEEeccc-hHHHHH-HHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhH--HhhCCCCCccE
Q 019187 128 KKVLVIGGGD-GGVLRE-VSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAF--LKAVPEGTYDA 203 (345)
Q Consensus 128 ~~VL~IG~G~-G~~~~~-ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~--l~~~~~~~yDv 203 (345)
++||+||||. |..+.+ |+++ +..+|+++|-+++-.+.+.... .++++.+.-|+.+. +... -..+|+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~-~d~~V~iAdRs~~~~~~i~~~~--------~~~v~~~~vD~~d~~al~~l-i~~~d~ 71 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQN-GDGEVTIADRSKEKCARIAELI--------GGKVEALQVDAADVDALVAL-IKDFDL 71 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhC-CCceEEEEeCCHHHHHHHHhhc--------cccceeEEecccChHHHHHH-HhcCCE
Confidence 5899999965 333333 3444 4479999999987766665542 23677777776443 2222 244699
Q ss_pred EEEcCCCCCCC-----------c--cccCcHHHHHHHHhccCCCcEEEEeccchhhhhhHHHHHHHH-HHhhcC--Ccce
Q 019187 204 VIVDSSDPIGP-----------A--QELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVAN-CRQIFK--GSVN 267 (345)
Q Consensus 204 Ii~D~~~p~~~-----------~--~~l~t~ef~~~v~r~LkpgGvlv~~~~s~~~~~~~~~~i~~~-l~~~F~--~~v~ 267 (345)
||.-++.+... . .--+..+.+..+...-+..|+.++.. .-+.+....-+... .++.|+ .++.
T Consensus 72 VIn~~p~~~~~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a~~Agit~v~~--~G~dPGi~nv~a~~a~~~~~~~i~si~ 149 (389)
T COG1748 72 VINAAPPFVDLTILKACIKTGVDYVDTSYYEEPPWKLDEEAKKAGITAVLG--CGFDPGITNVLAAYAAKELFDEIESID 149 (389)
T ss_pred EEEeCCchhhHHHHHHHHHhCCCEEEcccCCchhhhhhHHHHHcCeEEEcc--cCcCcchHHHHHHHHHHHhhccccEEE
Confidence 99765543211 0 00011122244444555567655533 12233333333333 334441 2345
Q ss_pred EEEEEEeecC
Q 019187 268 YAWTTVPTYP 277 (345)
Q Consensus 268 ~~~~~vP~y~ 277 (345)
.|....|..+
T Consensus 150 iy~g~~g~~~ 159 (389)
T COG1748 150 IYVGGLGEHG 159 (389)
T ss_pred EEEecCCCCC
Confidence 5666778776
No 381
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=89.62 E-value=1.2 Score=41.46 Aligned_cols=106 Identities=17% Similarity=0.174 Sum_probs=55.5
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCC--CEEEEEe---chHhHHhhCCCCC
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDP--RVTLHIG---DGVAFLKAVPEGT 200 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~--rv~v~~~---D~~~~l~~~~~~~ 200 (345)
++.+||++|+|+|..+..++.+. ..+|..-|+-..+ +..+.+.......++.. .+.+..- ++... ... ...
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~-~~~v~ltD~~~~~-~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~-~~~-~~~ 161 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL-GAEVVLTDLPKVV-ENLKFNRDKNNIALNQLGGSVIVAILVWGNALDV-SFR-LPN 161 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh-cceeccCCchhhH-HHHHHhhhhhhhhhhhcCCceeEEEEecCCcccH-hhc-cCC
Confidence 46789999999998888888765 4578777775444 33333322111111111 2322221 11111 111 233
Q ss_pred -ccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEE
Q 019187 201 -YDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVST 239 (345)
Q Consensus 201 -yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~ 239 (345)
+|+|+. .|.+.... .+ ......++..|..+|++.+
T Consensus 162 ~~Dlila--sDvvy~~~-~~-e~Lv~tla~ll~~~~~i~l 197 (248)
T KOG2793|consen 162 PFDLILA--SDVVYEEE-SF-EGLVKTLAFLLAKDGTIFL 197 (248)
T ss_pred cccEEEE--eeeeecCC-cc-hhHHHHHHHHHhcCCeEEE
Confidence 899994 33322111 11 2456667778888884443
No 382
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=89.62 E-value=3.6 Score=39.29 Aligned_cols=100 Identities=21% Similarity=0.293 Sum_probs=58.8
Q ss_pred CCCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhh-CCCCCcc
Q 019187 125 PNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKA-VPEGTYD 202 (345)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~-~~~~~yD 202 (345)
....+||+.|+|. |..+.++++..+..+|++++.++.-.+.++++ .. +.-+.....+....+.+ .....+|
T Consensus 165 ~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~-g~------~~~v~~~~~~~~~~i~~~~~~~~~d 237 (345)
T cd08286 165 KPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKL-GA------THTVNSAKGDAIEQVLELTDGRGVD 237 (345)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh-CC------CceeccccccHHHHHHHHhCCCCCC
Confidence 3457899876543 22344466666546788899988877777763 21 11122222232222222 2235699
Q ss_pred EEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 203 AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 203 vIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
+|+ |... ....++.+.+.|+++|.++.-.
T Consensus 238 ~vl-d~~g---------~~~~~~~~~~~l~~~g~~v~~g 266 (345)
T cd08286 238 VVI-EAVG---------IPATFELCQELVAPGGHIANVG 266 (345)
T ss_pred EEE-ECCC---------CHHHHHHHHHhccCCcEEEEec
Confidence 888 3321 1245788889999999998643
No 383
>PTZ00117 malate dehydrogenase; Provisional
Probab=89.45 E-value=5.8 Score=38.28 Aligned_cols=107 Identities=19% Similarity=0.243 Sum_probs=57.4
Q ss_pred CCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhc-ccccccCCCCCCEEEEE-echHhHHhhCCCCCcc
Q 019187 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQF-FPDVAVGFEDPRVTLHI-GDGVAFLKAVPEGTYD 202 (345)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~-~~~~~~~~~~~rv~v~~-~D~~~~l~~~~~~~yD 202 (345)
+..+|.+||+|. |.....++...+..++..+|++++..+ +... +... ........++.. +|.. -++ .-|
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~-g~~lDl~~~-~~~~~~~~~i~~~~d~~-~l~-----~AD 75 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQ-GKALDLKHF-STLVGSNINILGTNNYE-DIK-----DSD 75 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccch-hHHHHHhhh-ccccCCCeEEEeCCCHH-HhC-----CCC
Confidence 446999999998 776666555544467999999986543 2111 1111 011222345554 4532 222 249
Q ss_pred EEEEcCCCCCCCc---ccc------CcHHHHHHHHhccCCCcEEEEec
Q 019187 203 AVIVDSSDPIGPA---QEL------FEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 203 vIi~D~~~p~~~~---~~l------~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
+|++-...+..+. ..+ .-.++.+.+.+. .|++++++-+
T Consensus 76 iVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~-~p~a~vivvs 122 (319)
T PTZ00117 76 VVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKY-CPNAFVICVT 122 (319)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEec
Confidence 9998653332221 011 113555666655 5888666543
No 384
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=89.29 E-value=1.4 Score=43.25 Aligned_cols=35 Identities=31% Similarity=0.302 Sum_probs=25.5
Q ss_pred CCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCH
Q 019187 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDK 160 (345)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~ 160 (345)
...+||++|||+ |+.....+...++.+++.||-|.
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 346999999986 44444444445789999999985
No 385
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=89.21 E-value=0.33 Score=45.08 Aligned_cols=46 Identities=24% Similarity=0.436 Sum_probs=36.3
Q ss_pred CceEEEEeccchHHHHHHHhcC--------CCcEEEEEECCHHHHHHHHhcccc
Q 019187 127 PKKVLVIGGGDGGVLREVSRHS--------SVEKIDICEIDKMVVDVSKQFFPD 172 (345)
Q Consensus 127 ~~~VL~IG~G~G~~~~~ll~~~--------~~~~V~~VEid~~vi~~ar~~~~~ 172 (345)
+-+|+++|+|+|.+++.++++. ...+++.||++|.+.+.-++.+..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 5799999999999999988752 135899999999999988888765
No 386
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=89.13 E-value=2.7 Score=39.77 Aligned_cols=95 Identities=19% Similarity=0.210 Sum_probs=58.5
Q ss_pred CCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHH--hhCCCCCcc
Q 019187 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFL--KAVPEGTYD 202 (345)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l--~~~~~~~yD 202 (345)
...+||++|+|. |..+.++++..+...|.+++-+++..+.++++-. . .++..+-..+. +....+.+|
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~------~----~~~~~~~~~~~~~~~~~~~~vd 228 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGA------T----ETVDPSREDPEAQKEDNPYGFD 228 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCC------e----EEecCCCCCHHHHHHhcCCCCc
Confidence 457999998653 5556667777655558889999888887765321 0 11111111110 122246799
Q ss_pred EEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEe
Q 019187 203 AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (345)
Q Consensus 203 vIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~ 240 (345)
+|+.... .....+.+.++|+++|.++.-
T Consensus 229 ~v~~~~~----------~~~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 229 VVIEATG----------VPKTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred EEEECCC----------ChHHHHHHHHHHhcCCEEEEE
Confidence 9984321 125678888999999999864
No 387
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=88.87 E-value=8 Score=39.00 Aligned_cols=86 Identities=16% Similarity=0.160 Sum_probs=51.0
Q ss_pred CCceEEEEeccchH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 126 NPKKVLVIGGGDGG-VLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 126 ~~~~VL~IG~G~G~-~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
..++|+++|+|.-+ .....++..+. +|+++|+|+.-...+... . .++. +..+.+ +..|+|
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~~~-G----------~~v~--~l~eal-----~~aDVV 271 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAAMD-G----------FRVM--TMEEAA-----ELGDIF 271 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHHhc-C----------CEec--CHHHHH-----hCCCEE
Confidence 46799999998743 33334555544 899999998654443321 1 1111 222322 357988
Q ss_pred EEcCCCCCCCccccCcHHHHH-HHHhccCCCcEEEEe
Q 019187 205 IVDSSDPIGPAQELFEKPFFE-SVAKALRPGGVVSTQ 240 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~-~v~r~LkpgGvlv~~ 240 (345)
|.... +...+. ...+.+|+|++++.-
T Consensus 272 I~aTG----------~~~vI~~~~~~~mK~GailiNv 298 (425)
T PRK05476 272 VTATG----------NKDVITAEHMEAMKDGAILANI 298 (425)
T ss_pred EECCC----------CHHHHHHHHHhcCCCCCEEEEc
Confidence 75321 134454 567789999888754
No 388
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=88.85 E-value=3.9 Score=39.89 Aligned_cols=99 Identities=17% Similarity=0.206 Sum_probs=65.9
Q ss_pred CceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 127 PKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 127 ~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
..+|.++|+|. |..+..-++..+..+|.+||+++.-.++|+++=..- .++..... |..+.+.+..++..|..+
T Consensus 186 G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~--~vn~~~~~----~vv~~i~~~T~gG~d~~~ 259 (366)
T COG1062 186 GDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATH--FVNPKEVD----DVVEAIVELTDGGADYAF 259 (366)
T ss_pred CCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCce--eecchhhh----hHHHHHHHhcCCCCCEEE
Confidence 45788888876 555555566667889999999999999999862211 01111111 666666665444677775
Q ss_pred EcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 206 ~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
|..- ..+.++....++..+|..++-.
T Consensus 260 -e~~G---------~~~~~~~al~~~~~~G~~v~iG 285 (366)
T COG1062 260 -ECVG---------NVEVMRQALEATHRGGTSVIIG 285 (366)
T ss_pred -EccC---------CHHHHHHHHHHHhcCCeEEEEe
Confidence 2221 2467888888899999887744
No 389
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=88.81 E-value=1.3 Score=38.83 Aligned_cols=32 Identities=25% Similarity=0.438 Sum_probs=22.7
Q ss_pred eEEEEeccc-hHHHHHHHhcCCCcEEEEEECCH
Q 019187 129 KVLVIGGGD-GGVLREVSRHSSVEKIDICEIDK 160 (345)
Q Consensus 129 ~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~ 160 (345)
+||+||+|. |+.....+...++.+++.+|.|.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 589999985 44333333334688999999996
No 390
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=88.76 E-value=1.4 Score=39.55 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=23.6
Q ss_pred CceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCH
Q 019187 127 PKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDK 160 (345)
Q Consensus 127 ~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~ 160 (345)
..+||++|+|+ |......+-..++.+++.+|-|.
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 46999999875 33333333345789999999884
No 391
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.69 E-value=1.2 Score=43.01 Aligned_cols=117 Identities=14% Similarity=0.114 Sum_probs=69.8
Q ss_pred EEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEEEcCC
Q 019187 130 VLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSS 209 (345)
Q Consensus 130 VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi~D~~ 209 (345)
|+++-||.|++..-+.+. +..-+.++|+|+..++..+.+++. .++.+|..+..... -...|+++..++
T Consensus 1 vidLF~G~GG~~~Gl~~a-G~~~~~a~e~~~~a~~ty~~N~~~----------~~~~~Di~~~~~~~-~~~~dvl~gg~P 68 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA-GFKCVFASEIDKYAQKTYEANFGN----------KVPFGDITKISPSD-IPDFDILLGGFP 68 (315)
T ss_pred CEEEecCccHHHHHHHHc-CCeEEEEEeCCHHHHHHHHHhCCC----------CCCccChhhhhhhh-CCCcCEEEecCC
Confidence 588999999988877655 456677899999999999988752 34557766654321 245899997655
Q ss_pred CCC----CCc-------cccCcHHHHHHHHhccCCCcEEEEeccchhh--hhhHHHHHHHHHHh
Q 019187 210 DPI----GPA-------QELFEKPFFESVAKALRPGGVVSTQAESIWL--HMHIIEDIVANCRQ 260 (345)
Q Consensus 210 ~p~----~~~-------~~l~t~ef~~~v~r~LkpgGvlv~~~~s~~~--~~~~~~~i~~~l~~ 260 (345)
... +.. ..| -.++++. .+.++|.=+++=|...... ....+..+++.++.
T Consensus 69 Cq~fS~ag~~~~~~d~r~~L-~~~~~r~-i~~~~P~~~v~ENV~~l~~~~~~~~~~~i~~~l~~ 130 (315)
T TIGR00675 69 CQPFSIAGKRKGFEDTRGTL-FFEIVRI-LKEKKPKFFLLENVKGLVSHDKGRTFKVIIETLEE 130 (315)
T ss_pred CcccchhcccCCCCCchhhH-HHHHHHH-HhhcCCCEEEeeccHHHHhcccchHHHHHHHHHHh
Confidence 321 110 111 1234433 3456887555544422211 12345566666654
No 392
>PRK10083 putative oxidoreductase; Provisional
Probab=88.67 E-value=4 Score=38.78 Aligned_cols=99 Identities=13% Similarity=0.095 Sum_probs=57.4
Q ss_pred CCCceEEEEeccc-hHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCcc
Q 019187 125 PNPKKVLVIGGGD-GGVLREVSRH-SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYD 202 (345)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~ll~~-~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yD 202 (345)
....+||+.|+|. |..+..+++. .+...+.+++.+++-.++++++-.. .-+.....+..+.+... ...+|
T Consensus 159 ~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~-------~~i~~~~~~~~~~~~~~-g~~~d 230 (339)
T PRK10083 159 TEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGAD-------WVINNAQEPLGEALEEK-GIKPT 230 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCc-------EEecCccccHHHHHhcC-CCCCC
Confidence 3456999999643 3333445663 3566788999999888888774211 01111112233333321 22345
Q ss_pred EEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 203 AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 203 vIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
+|+ |... ....++...+.|+++|.++.-.
T Consensus 231 ~vi-d~~g---------~~~~~~~~~~~l~~~G~~v~~g 259 (339)
T PRK10083 231 LII-DAAC---------HPSILEEAVTLASPAARIVLMG 259 (339)
T ss_pred EEE-ECCC---------CHHHHHHHHHHhhcCCEEEEEc
Confidence 665 3322 1245778889999999998754
No 393
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=88.51 E-value=5.5 Score=37.76 Aligned_cols=99 Identities=18% Similarity=0.279 Sum_probs=59.5
Q ss_pred CCCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEE-echHhHHhhCCCCCcc
Q 019187 125 PNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHI-GDGVAFLKAVPEGTYD 202 (345)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~-~D~~~~l~~~~~~~yD 202 (345)
....+||+.|+|. |..+..++++....+|+++.-+++-.+.++++ .. +.-+.... .+..+.+.+. .+.+|
T Consensus 161 ~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~~-g~------~~v~~~~~~~~~~~~v~~~-~~~~d 232 (338)
T PRK09422 161 KPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEV-GA------DLTINSKRVEDVAKIIQEK-TGGAH 232 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHc-CC------cEEecccccccHHHHHHHh-cCCCc
Confidence 3467999998543 34455566652134799999999888888653 21 10011101 2223334433 23588
Q ss_pred EEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 203 AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 203 vIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
+++.+... .+.++.+.+.|+++|.++.-.
T Consensus 233 ~vi~~~~~----------~~~~~~~~~~l~~~G~~v~~g 261 (338)
T PRK09422 233 AAVVTAVA----------KAAFNQAVDAVRAGGRVVAVG 261 (338)
T ss_pred EEEEeCCC----------HHHHHHHHHhccCCCEEEEEe
Confidence 76655432 356888899999999998643
No 394
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=88.31 E-value=3.3 Score=39.73 Aligned_cols=89 Identities=13% Similarity=0.158 Sum_probs=56.4
Q ss_pred CCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
...+||+.|+|. |..+..+++..+. +|++++.+++-.+.+++. .. + .++..+ + ...+.+|++
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~~-Ga-----~----~vi~~~--~----~~~~~~d~~ 227 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALAL-GA-----A----SAGGAY--D----TPPEPLDAA 227 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHh-CC-----c----eecccc--c----cCcccceEE
Confidence 457999999653 4455667777654 689999998888888874 21 1 011100 0 112458876
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
+..... ...++...++|+++|.+++-.
T Consensus 228 i~~~~~----------~~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 228 ILFAPA----------GGLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred EECCCc----------HHHHHHHHHhhCCCcEEEEEe
Confidence 642211 145778889999999998743
No 395
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=88.20 E-value=3.1 Score=38.06 Aligned_cols=72 Identities=25% Similarity=0.392 Sum_probs=48.1
Q ss_pred ceEEEEeccc-hH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechH--hHHhhCCCCCccE
Q 019187 128 KKVLVIGGGD-GG-VLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGV--AFLKAVPEGTYDA 203 (345)
Q Consensus 128 ~~VL~IG~G~-G~-~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~--~~l~~~~~~~yDv 203 (345)
++++++|+|. |. +++.|.+. ...|+.+|.|++.++.... ...-+.++++|+. +.|++..-..+|+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~--g~~Vv~Id~d~~~~~~~~~---------~~~~~~~v~gd~t~~~~L~~agi~~aD~ 69 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE--GHNVVLIDRDEERVEEFLA---------DELDTHVVIGDATDEDVLEEAGIDDADA 69 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC--CCceEEEEcCHHHHHHHhh---------hhcceEEEEecCCCHHHHHhcCCCcCCE
Confidence 4789999986 22 33444444 3579999999987665322 1124678888884 4566655578999
Q ss_pred EEEcCCC
Q 019187 204 VIVDSSD 210 (345)
Q Consensus 204 Ii~D~~~ 210 (345)
++.....
T Consensus 70 vva~t~~ 76 (225)
T COG0569 70 VVAATGN 76 (225)
T ss_pred EEEeeCC
Confidence 9986543
No 396
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=88.17 E-value=7.2 Score=37.08 Aligned_cols=100 Identities=20% Similarity=0.222 Sum_probs=58.9
Q ss_pred CCCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccE
Q 019187 125 PNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (345)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDv 203 (345)
....+||+.|+|. |..+..+++..+...|+++.-+++..+.++++ .. +.-+........+.........+|+
T Consensus 158 ~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~-g~------~~~~~~~~~~~~~~~~~~~~~~~d~ 230 (343)
T cd08236 158 TLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVAREL-GA------DDTINPKEEDVEKVRELTEGRGADL 230 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc-CC------CEEecCccccHHHHHHHhCCCCCCE
Confidence 3456899998655 55666677776655588888887777776543 21 0001111111122222222345999
Q ss_pred EEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 204 Ii~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
|+-... ....+..+.++|+++|.++.-.
T Consensus 231 vld~~g----------~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 231 VIEAAG----------SPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred EEECCC----------CHHHHHHHHHHhhcCCEEEEEc
Confidence 883211 1356788899999999988643
No 397
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=88.14 E-value=1.3 Score=40.51 Aligned_cols=34 Identities=29% Similarity=0.456 Sum_probs=24.1
Q ss_pred CceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCH
Q 019187 127 PKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDK 160 (345)
Q Consensus 127 ~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~ 160 (345)
..+|+++|||+ |......+...++.+++.+|-|.
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 46999999985 44444434445789999998774
No 398
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=88.10 E-value=4.7 Score=40.32 Aligned_cols=74 Identities=22% Similarity=0.317 Sum_probs=48.9
Q ss_pred CCceEEEEeccchHHHHHHHhc--CCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechH--hHHhhCCCCCc
Q 019187 126 NPKKVLVIGGGDGGVLREVSRH--SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGV--AFLKAVPEGTY 201 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~--~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~--~~l~~~~~~~y 201 (345)
..++|+++|+|. +++.+++. .....|+++|.|++.++..++.+ +.+.++.+|+. +.+++..-+++
T Consensus 230 ~~~~iiIiG~G~--~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~---------~~~~~i~gd~~~~~~L~~~~~~~a 298 (453)
T PRK09496 230 PVKRVMIVGGGN--IGYYLAKLLEKEGYSVKLIERDPERAEELAEEL---------PNTLVLHGDGTDQELLEEEGIDEA 298 (453)
T ss_pred CCCEEEEECCCH--HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC---------CCCeEEECCCCCHHHHHhcCCccC
Confidence 367999999975 33333321 11357999999999888776643 23568888984 33444434679
Q ss_pred cEEEEcCCC
Q 019187 202 DAVIVDSSD 210 (345)
Q Consensus 202 DvIi~D~~~ 210 (345)
|+|++-..+
T Consensus 299 ~~vi~~~~~ 307 (453)
T PRK09496 299 DAFIALTND 307 (453)
T ss_pred CEEEECCCC
Confidence 999875544
No 399
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=87.98 E-value=3.6 Score=32.66 Aligned_cols=87 Identities=20% Similarity=0.261 Sum_probs=49.8
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
+.++||+||+|.-+..+.-.-.....+|+.+..+. +.+++ ++++...+.. .. -..+|+|+
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~---~~~~~------------~i~~~~~~~~---~~--l~~~~lV~ 65 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI---EFSEG------------LIQLIRREFE---ED--LDGADLVF 65 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE---HHHHT------------SCEEEESS-G---GG--CTTESEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch---hhhhh------------HHHHHhhhHH---HH--HhhheEEE
Confidence 56899999998866655422222347899988876 22222 3455544422 12 24589999
Q ss_pred EcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEecc
Q 019187 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAE 242 (345)
Q Consensus 206 ~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~ 242 (345)
+...++ +.-+.+++..+.-|+++-.+.
T Consensus 66 ~at~d~----------~~n~~i~~~a~~~~i~vn~~D 92 (103)
T PF13241_consen 66 AATDDP----------ELNEAIYADARARGILVNVVD 92 (103)
T ss_dssp E-SS-H----------HHHHHHHHHHHHTTSEEEETT
T ss_pred ecCCCH----------HHHHHHHHHHhhCCEEEEECC
Confidence 765442 444555555666788876543
No 400
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=87.90 E-value=1.7 Score=39.45 Aligned_cols=34 Identities=24% Similarity=0.410 Sum_probs=24.4
Q ss_pred CCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECC
Q 019187 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEID 159 (345)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid 159 (345)
...+|++||+|. |+.....+...++.+++.+|.|
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 356999999885 4444443334478899999999
No 401
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=87.77 E-value=0.97 Score=44.84 Aligned_cols=59 Identities=24% Similarity=0.411 Sum_probs=46.2
Q ss_pred CCEEEEEechHhHHhhCCCCCccEEEE-cCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 180 PRVTLHIGDGVAFLKAVPEGTYDAVIV-DSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 180 ~rv~v~~~D~~~~l~~~~~~~yDvIi~-D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
.+++++.++..+++++.+++++|..++ |..|= ..... -.+.++.+.+.++|||.++..+
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dw-m~~~~--~~~~~~~l~~~~~pgaRV~~Rs 334 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDW-MDPEQ--LNEEWQELARTARPGARVLWRS 334 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhh-CCHHH--HHHHHHHHHHHhCCCCEEEEee
Confidence 589999999999999877899998664 65542 22221 2577899999999999999876
No 402
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=87.47 E-value=14 Score=35.77 Aligned_cols=72 Identities=21% Similarity=0.283 Sum_probs=41.8
Q ss_pred CceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHH-----HHHHhcccccccCCCCCCEEEEE-echHhHHhhCCCC
Q 019187 127 PKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVV-----DVSKQFFPDVAVGFEDPRVTLHI-GDGVAFLKAVPEG 199 (345)
Q Consensus 127 ~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi-----~~ar~~~~~~~~~~~~~rv~v~~-~D~~~~l~~~~~~ 199 (345)
.++|.+||+|. |.....++...+...+..+|++++.. +.... . .+.+...++.. +|. +-+ .
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~--~----~~~~~~~~I~~~~d~-~~l-----~ 73 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHS--N----VIAGSNSKVIGTNNY-EDI-----A 73 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhh--h----hccCCCeEEEECCCH-HHh-----C
Confidence 46999999998 44444444444545699999999853 22221 1 11223456664 563 222 3
Q ss_pred CccEEEEcCCC
Q 019187 200 TYDAVIVDSSD 210 (345)
Q Consensus 200 ~yDvIi~D~~~ 210 (345)
.-|+||.-...
T Consensus 74 ~aDiVI~tag~ 84 (321)
T PTZ00082 74 GSDVVIVTAGL 84 (321)
T ss_pred CCCEEEECCCC
Confidence 35999985543
No 403
>PRK13699 putative methylase; Provisional
Probab=87.38 E-value=1.2 Score=40.97 Aligned_cols=47 Identities=15% Similarity=-0.015 Sum_probs=39.9
Q ss_pred CCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhccccc
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDV 173 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~ 173 (345)
.....|||--||+|.++..+.+. ..+..++|++++..+.+++.+...
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~--~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQS--GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHc--CCCEEEEecCHHHHHHHHHHHHHH
Confidence 45678999999999999988877 467899999999999998877543
No 404
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=87.31 E-value=0.084 Score=42.90 Aligned_cols=42 Identities=26% Similarity=0.374 Sum_probs=27.4
Q ss_pred CccEEEEcCCCCCCCc--cccCcHHHHHHHHhccCCCcEEEEec
Q 019187 200 TYDAVIVDSSDPIGPA--QELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 200 ~yDvIi~D~~~p~~~~--~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
+||+|+|=+-.-|.+. .+---..||+.+++.|+|||+|++..
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 5899997554332110 00012579999999999999999975
No 405
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=87.30 E-value=6.5 Score=38.92 Aligned_cols=107 Identities=11% Similarity=0.137 Sum_probs=61.5
Q ss_pred CCCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEE---echHhHHhhC-CCC
Q 019187 125 PNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHI---GDGVAFLKAV-PEG 199 (345)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~---~D~~~~l~~~-~~~ 199 (345)
....+||+.|+|. |..+..+++..+...|.++|.+++-.+.+++. .. . .+.. .+..+.+.+. ...
T Consensus 184 ~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~-Ga--------~-~v~~~~~~~~~~~v~~~~~~~ 253 (393)
T TIGR02819 184 GPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF-GC--------E-TVDLSKDATLPEQIEQILGEP 253 (393)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc-CC--------e-EEecCCcccHHHHHHHHcCCC
Confidence 3457899877654 33445577776666677789998888998874 21 1 1211 1233333322 234
Q ss_pred CccEEEEcCCCCCC--Cc--cccCcHHHHHHHHhccCCCcEEEEec
Q 019187 200 TYDAVIVDSSDPIG--PA--QELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 200 ~yDvIi~D~~~p~~--~~--~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
.+|+|+--...+.. .. ..--....++...+.++++|.+++-.
T Consensus 254 g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G 299 (393)
T TIGR02819 254 EVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPG 299 (393)
T ss_pred CCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEee
Confidence 68988743322210 00 00001136788889999999998754
No 406
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=87.25 E-value=2.2 Score=43.97 Aligned_cols=105 Identities=16% Similarity=0.195 Sum_probs=64.2
Q ss_pred CCceEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhccccc-----ccC-CC-------CCCEEEEEechH
Q 019187 126 NPKKVLVIGGGDGG--VLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDV-----AVG-FE-------DPRVTLHIGDGV 190 (345)
Q Consensus 126 ~~~~VL~IG~G~G~--~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~-----~~~-~~-------~~rv~v~~~D~~ 190 (345)
+.++|-+||+|+-+ ++..+++. .-+|+++|.+++.++.+++.+... ..+ +. -.|++.. .|..
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~a--G~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~~ 80 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASA--GHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPV-TDLH 80 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEe-CCHH
Confidence 45689999999644 44445555 358999999999988765433211 001 10 0133322 2322
Q ss_pred hHHhhCCCCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEeccch
Q 019187 191 AFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESI 244 (345)
Q Consensus 191 ~~l~~~~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s~ 244 (345)
.. ..-|+||.-.++... ....+|+.+.+.++|+.+++.++.+.
T Consensus 81 ----~l--~~aDlVIEav~E~~~-----vK~~vf~~l~~~~~~~~IlasnTStl 123 (503)
T TIGR02279 81 ----AL--ADAGLVIEAIVENLE-----VKKALFAQLEELCPADTIIASNTSSL 123 (503)
T ss_pred ----Hh--CCCCEEEEcCcCcHH-----HHHHHHHHHHhhCCCCeEEEECCCCC
Confidence 12 246999976654321 13577888889999998888777553
No 407
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=87.21 E-value=9.3 Score=36.82 Aligned_cols=109 Identities=17% Similarity=0.284 Sum_probs=59.5
Q ss_pred CCCceEEEEeccc-hHHHHHHHh-cCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCcc
Q 019187 125 PNPKKVLVIGGGD-GGVLREVSR-HSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYD 202 (345)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~ll~-~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yD 202 (345)
+.+.+|.+||+|. |......+. ..-..++..+|++++.++--..-+.... .+. .++.+..+|..+ + ...|
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~-~~~-~~~~i~~~~~~~-~-----~~ad 75 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAV-PFT-SPTKIYAGDYSD-C-----KDAD 75 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhc-ccc-CCeEEEeCCHHH-h-----CCCC
Confidence 3567999999987 655555443 3334589999998765432222122111 122 246666555322 2 3469
Q ss_pred EEEEcCCCCCCCc---cccC--cHHHHHHHHhcc---CCCcEEEEec
Q 019187 203 AVIVDSSDPIGPA---QELF--EKPFFESVAKAL---RPGGVVSTQA 241 (345)
Q Consensus 203 vIi~D~~~p~~~~---~~l~--t~ef~~~v~r~L---kpgGvlv~~~ 241 (345)
+||+-...|..+. ..++ ....++.+...+ .|+|++++-+
T Consensus 76 ivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs 122 (315)
T PRK00066 76 LVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS 122 (315)
T ss_pred EEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 9998665544332 1111 234455544433 3788877654
No 408
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=87.10 E-value=1.8 Score=42.30 Aligned_cols=35 Identities=34% Similarity=0.501 Sum_probs=24.4
Q ss_pred CCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCH
Q 019187 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDK 160 (345)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~ 160 (345)
...+||++|+|. |......+...++.+++.||-|.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 356899999985 43333333344788999999983
No 409
>PRK06223 malate dehydrogenase; Reviewed
Probab=87.04 E-value=9.5 Score=36.25 Aligned_cols=106 Identities=20% Similarity=0.242 Sum_probs=54.0
Q ss_pred ceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEE-echHhHHhhCCCCCccEEE
Q 019187 128 KKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHI-GDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 128 ~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~-~D~~~~l~~~~~~~yDvIi 205 (345)
.+|-+||+|. |......+...+..+|..+|++++..+....-+.... .......++.. .|. +-+ ..-|+||
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~-~~~~~~~~i~~~~d~-~~~-----~~aDiVi 75 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAA-PVEGFDTKITGTNDY-EDI-----AGSDVVV 75 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhh-hhcCCCcEEEeCCCH-HHH-----CCCCEEE
Confidence 4899999988 6655554443232289999998876432111111110 01111234443 442 222 2359999
Q ss_pred EcCCCCCCCccc---------cCcHHHHHHHHhccCCCcEEEEec
Q 019187 206 VDSSDPIGPAQE---------LFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 206 ~D~~~p~~~~~~---------l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
+-...|..+... -.-.++++.+.+.. |++++++.+
T Consensus 76 i~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv~t 119 (307)
T PRK06223 76 ITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIVVT 119 (307)
T ss_pred ECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEec
Confidence 865444432111 01134555555554 778776654
No 410
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=86.92 E-value=2.6 Score=42.17 Aligned_cols=102 Identities=13% Similarity=0.115 Sum_probs=69.4
Q ss_pred EEEEEcCcceEEEEc-CeEeeeccchhHHHHHHHhcccccCCCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHH
Q 019187 85 MVFQSSTYGKVLILD-GVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVV 163 (345)
Q Consensus 85 ~v~e~~~~g~~L~lD-g~~q~~~~de~~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi 163 (345)
.+++.+..|...-+| |.+....+. ..-||-++. +. ..+.-|.|+-||-|-.+.-+++.. .+|++-|++++++
T Consensus 212 ~vtevre~~~~Fk~DfskVYWnsRL-~~Eherlsg--~f--k~gevv~D~FaGvGPfa~Pa~kK~--crV~aNDLNpesi 284 (495)
T KOG2078|consen 212 LVTEVREGGERFKFDFSKVYWNSRL-SHEHERLSG--LF--KPGEVVCDVFAGVGPFALPAAKKG--CRVYANDLNPESI 284 (495)
T ss_pred eEEEEecCCeeEEEecceEEeeccc-hhHHHHHhh--cc--CCcchhhhhhcCcCccccchhhcC--cEEEecCCCHHHH
Confidence 344544444444444 333333322 122444444 22 345678999999999998888773 7999999999999
Q ss_pred HHHHhcccccccCCCCCCEEEEEechHhHHhh
Q 019187 164 DVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKA 195 (345)
Q Consensus 164 ~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~ 195 (345)
+..+.+++.. -.+..+++++..||..|+++
T Consensus 285 k~Lk~ni~lN--kv~~~~iei~Nmda~~Flr~ 314 (495)
T KOG2078|consen 285 KWLKANIKLN--KVDPSAIEIFNMDAKDFLRQ 314 (495)
T ss_pred HHHHHhcccc--ccchhheeeecccHHHHhhc
Confidence 9999988764 23444599999999999963
No 411
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=86.76 E-value=5.7 Score=37.41 Aligned_cols=98 Identities=13% Similarity=0.124 Sum_probs=59.8
Q ss_pred CCceEEEEec--cchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccE
Q 019187 126 NPKKVLVIGG--GDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (345)
Q Consensus 126 ~~~~VL~IG~--G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDv 203 (345)
...+||+.|+ +.|..+..+++..+ .+|+++.-++.-.+.+++.+.. +.-+.....+..+.+.....+.+|+
T Consensus 145 ~~~~vlI~g~~g~ig~~~~~~a~~~G-~~vi~~~~~~~~~~~~~~~~g~------~~~~~~~~~~~~~~v~~~~~~~~d~ 217 (329)
T cd05288 145 PGETVVVSAAAGAVGSVVGQIAKLLG-ARVVGIAGSDEKCRWLVEELGF------DAAINYKTPDLAEALKEAAPDGIDV 217 (329)
T ss_pred CCCEEEEecCcchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHhhcCC------ceEEecCChhHHHHHHHhccCCceE
Confidence 4578999984 45666777777765 4788999888888877764431 1111111112222222221356998
Q ss_pred EEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 204 Ii~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
|+ |... ...++.+.+.|+++|.++...
T Consensus 218 vi-~~~g----------~~~~~~~~~~l~~~G~~v~~g 244 (329)
T cd05288 218 YF-DNVG----------GEILDAALTLLNKGGRIALCG 244 (329)
T ss_pred EE-Ecch----------HHHHHHHHHhcCCCceEEEEe
Confidence 87 3321 135677888999999988643
No 412
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=86.64 E-value=3.4 Score=34.53 Aligned_cols=42 Identities=29% Similarity=0.515 Sum_probs=25.4
Q ss_pred eEEEEeccc-hHHHHHHHhcCCCcEEEEEECCH-HHHHHHHhcc
Q 019187 129 KVLVIGGGD-GGVLREVSRHSSVEKIDICEIDK-MVVDVSKQFF 170 (345)
Q Consensus 129 ~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~-~vi~~ar~~~ 170 (345)
+||++|||. |......+-..++.+++.+|-|. +.-.+.++++
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~ 44 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFL 44 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhcccc
Confidence 589999974 33333323334688999999884 2333444443
No 413
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=86.51 E-value=1.2 Score=40.47 Aligned_cols=95 Identities=21% Similarity=0.251 Sum_probs=51.7
Q ss_pred cccccCCCCceEEEEeccchHHHHH--HHhcCCCcEEEEEECC--HHHHHHHHhcccccccCCCCCCEEEEEechHhHHh
Q 019187 119 LPLCSIPNPKKVLVIGGGDGGVLRE--VSRHSSVEKIDICEID--KMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLK 194 (345)
Q Consensus 119 l~l~~~~~~~~VL~IG~G~G~~~~~--ll~~~~~~~V~~VEid--~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~ 194 (345)
+|+...-..++||++|||+-+.-+. +++. ..+|+++-.+ +++-...++ .++.++..+ |..
T Consensus 4 lPl~~~l~~k~VlvvGgG~va~rKa~~ll~~--ga~v~Vvs~~~~~el~~~~~~-----------~~i~~~~~~---~~~ 67 (210)
T COG1648 4 LPLFLDLEGKKVLVVGGGSVALRKARLLLKA--GADVTVVSPEFEPELKALIEE-----------GKIKWIERE---FDA 67 (210)
T ss_pred cceEEEcCCCEEEEECCCHHHHHHHHHHHhc--CCEEEEEcCCccHHHHHHHHh-----------cCcchhhcc---cCh
Confidence 4544444678999999999776554 3444 4566665443 333333322 233333322 221
Q ss_pred hCCCCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEe
Q 019187 195 AVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (345)
Q Consensus 195 ~~~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~ 240 (345)
.. ...+++|+....++ +.-+.+++..++-|+++-.
T Consensus 68 ~~-~~~~~lviaAt~d~----------~ln~~i~~~a~~~~i~vNv 102 (210)
T COG1648 68 ED-LDDAFLVIAATDDE----------ELNERIAKAARERRILVNV 102 (210)
T ss_pred hh-hcCceEEEEeCCCH----------HHHHHHHHHHHHhCCceec
Confidence 11 23388888776653 4455556666666666643
No 414
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=86.43 E-value=3 Score=39.73 Aligned_cols=40 Identities=23% Similarity=0.345 Sum_probs=26.4
Q ss_pred CceEEEEeccchHHHHHHHh---cCCCcEEEEEECCH-HHHHHHHh
Q 019187 127 PKKVLVIGGGDGGVLREVSR---HSSVEKIDICEIDK-MVVDVSKQ 168 (345)
Q Consensus 127 ~~~VL~IG~G~G~~~~~ll~---~~~~~~V~~VEid~-~vi~~ar~ 168 (345)
..+||++|+|+ ++.++++ ..++.+++.+|-|. +.-++.++
T Consensus 19 ~s~VLIvG~gG--LG~EiaKnLalaGVg~itI~D~d~ve~snL~rq 62 (286)
T cd01491 19 KSNVLISGLGG--LGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQ 62 (286)
T ss_pred cCcEEEEcCCH--HHHHHHHHHHHcCCCeEEEEcCCccchhhcccC
Confidence 46999999874 3344443 35789999999885 23334444
No 415
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=86.41 E-value=8.1 Score=37.07 Aligned_cols=95 Identities=21% Similarity=0.210 Sum_probs=52.1
Q ss_pred CCceEEEEeccchH-HHHHHHhcCCCcEEEEEECCHHH-HHHHHhcccccccCCCCCCEEEEE-echHhHHhhCCCCCcc
Q 019187 126 NPKKVLVIGGGDGG-VLREVSRHSSVEKIDICEIDKMV-VDVSKQFFPDVAVGFEDPRVTLHI-GDGVAFLKAVPEGTYD 202 (345)
Q Consensus 126 ~~~~VL~IG~G~G~-~~~~ll~~~~~~~V~~VEid~~v-i~~ar~~~~~~~~~~~~~rv~v~~-~D~~~~l~~~~~~~yD 202 (345)
..++|++||+|.=+ .....++..+..+|++++.+++- .++++++ +. .++. .|..+.+ ..+|
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~-g~----------~~~~~~~~~~~l-----~~aD 240 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL-GG----------NAVPLDELLELL-----NEAD 240 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc-CC----------eEEeHHHHHHHH-----hcCC
Confidence 46799999987633 22223333456789999999764 4566553 21 1221 2222222 3479
Q ss_pred EEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEeccc
Q 019187 203 AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAES 243 (345)
Q Consensus 203 vIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s 243 (345)
+||.-...+.. .+.++.+.+....+|.+++....
T Consensus 241 vVi~at~~~~~-------~~~~~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 241 VVISATGAPHY-------AKIVERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred EEEECCCCCch-------HHHHHHHHhhCCCCCeEEEEeCC
Confidence 99976554321 23344443333335777776543
No 416
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=86.37 E-value=11 Score=37.58 Aligned_cols=111 Identities=18% Similarity=0.091 Sum_probs=66.3
Q ss_pred ceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhh---------C-C
Q 019187 128 KKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKA---------V-P 197 (345)
Q Consensus 128 ~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~---------~-~ 197 (345)
.+|-+||.|==++...++-.....+|+++||++..++...+-- ..+..-+..+.+++ . .
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~-----------~~i~e~~~~~~v~~~v~~g~lraTtd 78 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGE-----------SYIEEPDLDEVVKEAVESGKLRATTD 78 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCc-----------ceeecCcHHHHHHHHHhcCCceEecC
Confidence 6888999887665555433222468999999999988765421 11111111111110 0 0
Q ss_pred ---CCCccEEEEcCCCCCCC---ccccCcHHHHHHHHhccCCCcEEEEeccchhhhhh
Q 019187 198 ---EGTYDAVIVDSSDPIGP---AQELFEKPFFESVAKALRPGGVVSTQAESIWLHMH 249 (345)
Q Consensus 198 ---~~~yDvIi~D~~~p~~~---~~~l~t~ef~~~v~r~LkpgGvlv~~~~s~~~~~~ 249 (345)
-..-|++|+..+.|... +.--|-....+.+...|++|-++++.+..+-...+
T Consensus 79 ~~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe 136 (436)
T COG0677 79 PEELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTE 136 (436)
T ss_pred hhhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHH
Confidence 12578888876665432 11123355677888999999999998876554433
No 417
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=86.31 E-value=11 Score=36.20 Aligned_cols=106 Identities=15% Similarity=0.258 Sum_probs=56.5
Q ss_pred eEEEEeccc-hHHHHH-HHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCC-CCEEEEEechHhHHhhCCCCCccEEE
Q 019187 129 KVLVIGGGD-GGVLRE-VSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFED-PRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 129 ~VL~IG~G~-G~~~~~-ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~-~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
+|-+||+|. |..... ++...-..++..+|+++...+--..-+... ..+.. .++++..+|. +-+ ..-|+||
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~-~~~~~~~~~~i~~~~y-~~~-----~~aDivv 73 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHA-TALTYSTNTKIRAGDY-DDC-----ADADIIV 73 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhh-hccCCCCCEEEEECCH-HHh-----CCCCEEE
Confidence 578899987 665544 444444468999999865432211111111 01222 3577777772 222 3359999
Q ss_pred EcCCCCCCCc-----cccC--cHHHHHHHHhcc---CCCcEEEEec
Q 019187 206 VDSSDPIGPA-----QELF--EKPFFESVAKAL---RPGGVVSTQA 241 (345)
Q Consensus 206 ~D~~~p~~~~-----~~l~--t~ef~~~v~r~L---kpgGvlv~~~ 241 (345)
+-+..|..+. ..|+ ..+.++.+...| .|+|++++-+
T Consensus 74 itaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvs 119 (307)
T cd05290 74 ITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILIT 119 (307)
T ss_pred ECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 8666544332 1121 234455544433 3788877654
No 418
>PRK08618 ornithine cyclodeaminase; Validated
Probab=86.17 E-value=14 Score=35.58 Aligned_cols=116 Identities=16% Similarity=0.175 Sum_probs=61.1
Q ss_pred ceEEEEEEcCcceEEEEcCeEeeeccchhHHHHHHHhcccccCCCCceEEEEeccchH--HHHHHHhcCCCcEEEEEECC
Q 019187 82 QNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGG--VLREVSRHSSVEKIDICEID 159 (345)
Q Consensus 82 q~i~v~e~~~~g~~L~lDg~~q~~~~de~~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~--~~~~ll~~~~~~~V~~VEid 159 (345)
+.|.+++...-.-..++||...+.-+-- .-...-+ ..+..+..++|++||||.=+ .+..++...+.++|..++.+
T Consensus 85 g~i~l~d~~tG~p~a~~d~~~lT~~RTa-a~sala~--~~la~~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~ 161 (325)
T PRK08618 85 GTVILSDFETGEVLAILDGTYLTQIRTG-ALSGVAT--KYLAREDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRT 161 (325)
T ss_pred EEEEEEeCCCCceEEEEccchhhhhhHH-HHHHHHH--HHhcCCCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCC
Confidence 3466666543223446677754433221 1111111 11234567899999999643 22334444567899999999
Q ss_pred HHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEEEcCCC
Q 019187 160 KMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSD 210 (345)
Q Consensus 160 ~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi~D~~~ 210 (345)
++-.+...+.+... + ..++. ...|..+.+. ..|+|++-.+.
T Consensus 162 ~~~a~~~~~~~~~~---~-~~~~~-~~~~~~~~~~-----~aDiVi~aT~s 202 (325)
T PRK08618 162 FEKAYAFAQEIQSK---F-NTEIY-VVNSADEAIE-----EADIIVTVTNA 202 (325)
T ss_pred HHHHHHHHHHHHHh---c-CCcEE-EeCCHHHHHh-----cCCEEEEccCC
Confidence 87655444433211 0 11222 2455554443 46999976543
No 419
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=86.06 E-value=5.3 Score=38.12 Aligned_cols=89 Identities=13% Similarity=0.194 Sum_probs=51.3
Q ss_pred CCceEEEEeccchH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEE-EechHhHHhhCCCCCccE
Q 019187 126 NPKKVLVIGGGDGG-VLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLH-IGDGVAFLKAVPEGTYDA 203 (345)
Q Consensus 126 ~~~~VL~IG~G~G~-~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~-~~D~~~~l~~~~~~~yDv 203 (345)
.+++|++||.|.-+ .+...++..+ .+|++++.++...+.++.. . .+.+ ..+..+. -..+|+
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~G-a~V~v~~r~~~~~~~~~~~-G----------~~~~~~~~l~~~-----l~~aDi 213 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALG-ANVTVGARKSAHLARITEM-G----------LSPFHLSELAEE-----VGKIDI 213 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHc-C----------CeeecHHHHHHH-----hCCCCE
Confidence 46899999987633 2333444444 4899999998766655542 1 1111 1222222 245899
Q ss_pred EEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 204 Ii~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
||.-.+. .+ .-+...+.++++++++--+
T Consensus 214 VI~t~p~------~~----i~~~~l~~~~~g~vIIDla 241 (296)
T PRK08306 214 IFNTIPA------LV----LTKEVLSKMPPEALIIDLA 241 (296)
T ss_pred EEECCCh------hh----hhHHHHHcCCCCcEEEEEc
Confidence 9964321 11 2244556788888776433
No 420
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=85.98 E-value=7.2 Score=37.92 Aligned_cols=93 Identities=19% Similarity=0.245 Sum_probs=52.6
Q ss_pred CCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHH-HHHHHhcccccccCCCCCCEEEEE-echHhHHhhCCCCCcc
Q 019187 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMV-VDVSKQFFPDVAVGFEDPRVTLHI-GDGVAFLKAVPEGTYD 202 (345)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~v-i~~ar~~~~~~~~~~~~~rv~v~~-~D~~~~l~~~~~~~yD 202 (345)
..++||+.|+|. |..+..+++..+. +|++++.++.- .+.+++ +.. + .++. .+. +.+... .+.+|
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~~~~~~~-~Ga-----~----~vi~~~~~-~~~~~~-~~~~D 249 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNKEDEAINR-LGA-----D----SFLVSTDP-EKMKAA-IGTMD 249 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcchhhhHHHh-CCC-----c----EEEcCCCH-HHHHhh-cCCCC
Confidence 457899988654 4455667777654 67777776543 334443 221 0 1111 111 122222 23589
Q ss_pred EEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 203 AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 203 vIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
+|+ |... ....++.+.+.|+++|.++.-.
T Consensus 250 ~vi-d~~g---------~~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 250 YII-DTVS---------AVHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred EEE-ECCC---------CHHHHHHHHHHhcCCcEEEEeC
Confidence 888 4332 1245777889999999998643
No 421
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=85.94 E-value=8.5 Score=36.78 Aligned_cols=107 Identities=18% Similarity=0.330 Sum_probs=54.8
Q ss_pred ceEEEEeccc-hHHHHHHHhcCCC-cEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 128 KKVLVIGGGD-GGVLREVSRHSSV-EKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 128 ~~VL~IG~G~-G~~~~~ll~~~~~-~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
++|.+||+|. |......+...+. .++..+|++++..+....-+.... .+....+.+..+|..+ + ...|+||
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~-~~~~~~~~i~~~~~~~-l-----~~aDIVI 73 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDAL-AFLPSPVKIKAGDYSD-C-----KDADIVV 73 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHh-hccCCCeEEEcCCHHH-h-----CCCCEEE
Confidence 3799999876 4333333333233 489999998776543332221110 0112234555444322 2 4579999
Q ss_pred EcCCCCCCCcc---ccC--cHHHHHHHHhc---cCCCcEEEEec
Q 019187 206 VDSSDPIGPAQ---ELF--EKPFFESVAKA---LRPGGVVSTQA 241 (345)
Q Consensus 206 ~D~~~p~~~~~---~l~--t~ef~~~v~r~---LkpgGvlv~~~ 241 (345)
+-...|..+.. .++ +.+.++.+.+. -.|+|++++-+
T Consensus 74 itag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs 117 (306)
T cd05291 74 ITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS 117 (306)
T ss_pred EccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 86655543321 111 12334444332 45788877654
No 422
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=85.82 E-value=6.7 Score=36.04 Aligned_cols=81 Identities=17% Similarity=0.272 Sum_probs=48.4
Q ss_pred CCCceEEEEeccchHHHHHHHhc--CCCcEEEEEECC-HHHHHHHHhcccccccCCCCCCEEEEEec----hHhHHhhCC
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRH--SSVEKIDICEID-KMVVDVSKQFFPDVAVGFEDPRVTLHIGD----GVAFLKAVP 197 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~--~~~~~V~~VEid-~~vi~~ar~~~~~~~~~~~~~rv~v~~~D----~~~~l~~~~ 197 (345)
..++.||+.||..|+++.++++. -....|.++--. +.|.+++.++ .. ..-++.+--.| ...+++..+
T Consensus 5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~-gl-----~~~kLDV~~~~~V~~v~~evr~~~ 78 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQF-GL-----KPYKLDVSKPEEVVTVSGEVRANP 78 (289)
T ss_pred cCCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhh-CC-----eeEEeccCChHHHHHHHHHHhhCC
Confidence 46789999999999999888774 234466665544 4566777553 11 11111111111 122344445
Q ss_pred CCCccEEEEcCCCC
Q 019187 198 EGTYDAVIVDSSDP 211 (345)
Q Consensus 198 ~~~yDvIi~D~~~p 211 (345)
.++.|+.+.++-.+
T Consensus 79 ~Gkld~L~NNAG~~ 92 (289)
T KOG1209|consen 79 DGKLDLLYNNAGQS 92 (289)
T ss_pred CCceEEEEcCCCCC
Confidence 78999999876544
No 423
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=85.77 E-value=8.2 Score=32.16 Aligned_cols=73 Identities=18% Similarity=0.197 Sum_probs=40.9
Q ss_pred CCceEEEEeccchH-H-HHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccE
Q 019187 126 NPKKVLVIGGGDGG-V-LREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (345)
Q Consensus 126 ~~~~VL~IG~G~G~-~-~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDv 203 (345)
+.++||+||+|.-+ . +..++.. +..+|+.+.-+.+-.+...+.++ ...++++.-+-.. .. -..+|+
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~-g~~~i~i~nRt~~ra~~l~~~~~-------~~~~~~~~~~~~~---~~-~~~~Di 78 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAAL-GAKEITIVNRTPERAEALAEEFG-------GVNIEAIPLEDLE---EA-LQEADI 78 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHT-TSSEEEEEESSHHHHHHHHHHHT-------GCSEEEEEGGGHC---HH-HHTESE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHcC-------ccccceeeHHHHH---HH-HhhCCe
Confidence 56899999986522 2 2223334 67889999998654443333332 2345555433221 11 245899
Q ss_pred EEEcCCC
Q 019187 204 VIVDSSD 210 (345)
Q Consensus 204 Ii~D~~~ 210 (345)
||.-.+.
T Consensus 79 vI~aT~~ 85 (135)
T PF01488_consen 79 VINATPS 85 (135)
T ss_dssp EEE-SST
T ss_pred EEEecCC
Confidence 9965544
No 424
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=85.66 E-value=8.9 Score=32.92 Aligned_cols=116 Identities=15% Similarity=0.203 Sum_probs=65.4
Q ss_pred ceEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 128 KKVLVIGGGDGG--VLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 128 ~~VL~IG~G~G~--~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
.+|-.||.|.-+ +++.|++. .-+|++.|.+++..+...+.- -....+..+.++.. |+|+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~--g~~v~~~d~~~~~~~~~~~~g------------~~~~~s~~e~~~~~-----dvvi 62 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKA--GYEVTVYDRSPEKAEALAEAG------------AEVADSPAEAAEQA-----DVVI 62 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHT--TTEEEEEESSHHHHHHHHHTT------------EEEESSHHHHHHHB-----SEEE
T ss_pred CEEEEEchHHHHHHHHHHHHhc--CCeEEeeccchhhhhhhHHhh------------hhhhhhhhhHhhcc-----cceE
Confidence 478899998744 34445555 357999999998776665421 22345666666543 9999
Q ss_pred EcCCCCCCCccccCcHHHHHH--HHhccCCCcEEEEeccchhhhhhHHHHHHHHHHhhcCCcceEEEEEEeec
Q 019187 206 VDSSDPIGPAQELFEKPFFES--VAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTY 276 (345)
Q Consensus 206 ~D~~~p~~~~~~l~t~ef~~~--v~r~LkpgGvlv~~~~s~~~~~~~~~~i~~~l~~~F~~~v~~~~~~vP~y 276 (345)
+-.+++.. .++.+.. +...|++|.+++--+. ..++..+++.+.+++. + + .+...|..
T Consensus 63 ~~v~~~~~------v~~v~~~~~i~~~l~~g~iiid~sT---~~p~~~~~~~~~~~~~--g-~--~~vdapV~ 121 (163)
T PF03446_consen 63 LCVPDDDA------VEAVLFGENILAGLRPGKIIIDMST---ISPETSRELAERLAAK--G-V--RYVDAPVS 121 (163)
T ss_dssp E-SSSHHH------HHHHHHCTTHGGGS-TTEEEEE-SS-----HHHHHHHHHHHHHT--T-E--EEEEEEEE
T ss_pred eecccchh------hhhhhhhhHHhhccccceEEEecCC---cchhhhhhhhhhhhhc--c-c--eeeeeeee
Confidence 87665311 2456666 7778888777764332 2344455566666542 2 2 23566655
No 425
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=85.56 E-value=2.2 Score=40.77 Aligned_cols=41 Identities=34% Similarity=0.593 Sum_probs=25.7
Q ss_pred eEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHH-HHHHHHhc
Q 019187 129 KVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKM-VVDVSKQF 169 (345)
Q Consensus 129 ~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~-vi~~ar~~ 169 (345)
+||+||+|+ |.-....+...++.+++.+|.|.- .-.+-|++
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQf 43 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQF 43 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCc
Confidence 689999874 333333333467899999998853 33344443
No 426
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=85.52 E-value=7.5 Score=37.43 Aligned_cols=99 Identities=16% Similarity=0.204 Sum_probs=57.0
Q ss_pred CCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEech---HhHHhh-CCCCC
Q 019187 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDG---VAFLKA-VPEGT 200 (345)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~---~~~l~~-~~~~~ 200 (345)
...+||+.|+|. |..+..+++..+..+|++++.+++-.+.+++ +.. +.-+.....+. ...+.+ .....
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~-~g~------~~vi~~~~~~~~~~~~~i~~~~~~~~ 249 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELARE-FGA------DATIDIDELPDPQRRAIVRDITGGRG 249 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-cCC------CeEEcCcccccHHHHHHHHHHhCCCC
Confidence 456899997543 3344556777665589999988887777765 321 00011111111 112222 22356
Q ss_pred ccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 201 YDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 201 yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
+|+|+-.... ...++...+.|+++|.++.-.
T Consensus 250 ~d~vid~~g~----------~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 250 ADVVIEASGH----------PAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred CcEEEECCCC----------hHHHHHHHHHhccCCEEEEEc
Confidence 9988732211 245677788999999998643
No 427
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=85.51 E-value=6 Score=35.54 Aligned_cols=34 Identities=18% Similarity=0.293 Sum_probs=23.7
Q ss_pred CCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECC
Q 019187 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEID 159 (345)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid 159 (345)
...+|+++|+|. |......+.+.++.+++.+|.|
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 357999999986 3333333333468899999999
No 428
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=85.50 E-value=6.5 Score=37.36 Aligned_cols=98 Identities=20% Similarity=0.281 Sum_probs=60.3
Q ss_pred CCCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhh-CCCCCcc
Q 019187 125 PNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKA-VPEGTYD 202 (345)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~-~~~~~yD 202 (345)
....+||+.|+|. |..+..+++..+ .+|+++.-+++..+.++++- . +.-+.....+..+.+.. .+...+|
T Consensus 158 ~~g~~vLI~g~g~vG~~a~~lA~~~g-~~v~~~~~s~~~~~~~~~~g-~------~~v~~~~~~~~~~~l~~~~~~~~vd 229 (337)
T cd08261 158 TAGDTVLVVGAGPIGLGVIQVAKARG-ARVIVVDIDDERLEFARELG-A------DDTINVGDEDVAARLRELTDGEGAD 229 (337)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEECCCHHHHHHHHHhC-C------CEEecCcccCHHHHHHHHhCCCCCC
Confidence 3467999998764 556677777764 46888888888877776532 1 11111222232233322 2235699
Q ss_pred EEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEe
Q 019187 203 AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (345)
Q Consensus 203 vIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~ 240 (345)
+|+-... ....+..+.+.|+++|.++.-
T Consensus 230 ~vld~~g----------~~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 230 VVIDATG----------NPASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred EEEECCC----------CHHHHHHHHHHHhcCCEEEEE
Confidence 9884321 135678889999999998864
No 429
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=85.06 E-value=8.9 Score=36.42 Aligned_cols=99 Identities=15% Similarity=0.170 Sum_probs=57.5
Q ss_pred CCCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhh-CCCCCcc
Q 019187 125 PNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKA-VPEGTYD 202 (345)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~-~~~~~yD 202 (345)
....+||+.|+|. |..+..+++..+..+|++++.+++-.+.++++ ... -+.....+....+.+ .+.+.+|
T Consensus 166 ~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~-g~~-------~~~~~~~~~~~~l~~~~~~~~~d 237 (344)
T cd08284 166 RPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAAL-GAE-------PINFEDAEPVERVREATEGRGAD 237 (344)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHh-CCe-------EEecCCcCHHHHHHHHhCCCCCC
Confidence 3467899987543 33444566666555788888887777777662 210 011111122222322 2235699
Q ss_pred EEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 203 AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 203 vIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
+|+--... ....+...+.|+++|.++.-.
T Consensus 238 vvid~~~~----------~~~~~~~~~~l~~~g~~v~~g 266 (344)
T cd08284 238 VVLEAVGG----------AAALDLAFDLVRPGGVISSVG 266 (344)
T ss_pred EEEECCCC----------HHHHHHHHHhcccCCEEEEEC
Confidence 88732211 256778889999999988654
No 430
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=85.04 E-value=10 Score=35.11 Aligned_cols=96 Identities=19% Similarity=0.304 Sum_probs=60.6
Q ss_pred CCCceEEEEec--cchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCcc
Q 019187 125 PNPKKVLVIGG--GDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYD 202 (345)
Q Consensus 125 ~~~~~VL~IG~--G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yD 202 (345)
....+||+.|+ +.|..+.++++..+ .+|+++..+++-.+.+++ +.. ..+-....+..+.+... ...+|
T Consensus 141 ~~g~~vlV~ga~g~~g~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~-~g~-------~~~~~~~~~~~~~i~~~-~~~~d 210 (320)
T cd08243 141 QPGDTLLIRGGTSSVGLAALKLAKALG-ATVTATTRSPERAALLKE-LGA-------DEVVIDDGAIAEQLRAA-PGGFD 210 (320)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHh-cCC-------cEEEecCccHHHHHHHh-CCCce
Confidence 45679999985 55777777888765 468888888877777754 221 01100112333334443 45699
Q ss_pred EEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 203 AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 203 vIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
+|+ |... ...++.+.+.|+++|.++...
T Consensus 211 ~vl-~~~~----------~~~~~~~~~~l~~~g~~v~~g 238 (320)
T cd08243 211 KVL-ELVG----------TATLKDSLRHLRPGGIVCMTG 238 (320)
T ss_pred EEE-ECCC----------hHHHHHHHHHhccCCEEEEEc
Confidence 888 3221 135677889999999998643
No 431
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=85.00 E-value=8.1 Score=32.37 Aligned_cols=78 Identities=18% Similarity=0.189 Sum_probs=45.1
Q ss_pred ceEEEEeccchHHHHHHHhc---CCCcEEEEEECC--HHHHHHHHhcccccccCCCCCCEEEEEechHh------HHhhC
Q 019187 128 KKVLVIGGGDGGVLREVSRH---SSVEKIDICEID--KMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVA------FLKAV 196 (345)
Q Consensus 128 ~~VL~IG~G~G~~~~~ll~~---~~~~~V~~VEid--~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~------~l~~~ 196 (345)
|.||+.|+++ +++++++++ .+...|..+.-+ ....+...+.++. ...++.++..|..+ .++..
T Consensus 1 k~~lItGa~~-giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~-----~~~~~~~~~~D~~~~~~~~~~~~~~ 74 (167)
T PF00106_consen 1 KTVLITGASS-GIGRALARALARRGARVVILTSRSEDSEGAQELIQELKA-----PGAKITFIECDLSDPESIRALIEEV 74 (167)
T ss_dssp EEEEEETTTS-HHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHH-----TTSEEEEEESETTSHHHHHHHHHHH
T ss_pred CEEEEECCCC-HHHHHHHHHHHhcCceEEEEeeecccccccccccccccc-----ccccccccccccccccccccccccc
Confidence 4678888664 566665553 245688888888 3333333333332 23578888877532 22221
Q ss_pred --CCCCccEEEEcCCCC
Q 019187 197 --PEGTYDAVIVDSSDP 211 (345)
Q Consensus 197 --~~~~yDvIi~D~~~p 211 (345)
..+..|++|......
T Consensus 75 ~~~~~~ld~li~~ag~~ 91 (167)
T PF00106_consen 75 IKRFGPLDILINNAGIF 91 (167)
T ss_dssp HHHHSSESEEEEECSCT
T ss_pred ccccccccccccccccc
Confidence 146799999866543
No 432
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=84.98 E-value=3.1 Score=44.77 Aligned_cols=103 Identities=15% Similarity=0.179 Sum_probs=64.0
Q ss_pred CceEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccc-----cC-CCC-------CCEEEEEechHh
Q 019187 127 PKKVLVIGGGDGG--VLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVA-----VG-FED-------PRVTLHIGDGVA 191 (345)
Q Consensus 127 ~~~VL~IG~G~G~--~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~-----~~-~~~-------~rv~v~~~D~~~ 191 (345)
.++|-+||+|+-+ ++..++.. .-+|+.+|.+++.++.++++....- .+ +.. .+++.. .|. +
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~ 388 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASK--GTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSY-A 388 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCH-H
Confidence 4689999999744 44445555 4589999999999888766543220 00 110 123222 121 1
Q ss_pred HHhhCCCCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEeccc
Q 019187 192 FLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAES 243 (345)
Q Consensus 192 ~l~~~~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s 243 (345)
-+ ..-|+||=..+... -..+++|+++-+.++|+.+|++|+.+
T Consensus 389 ~~-----~~aDlViEav~E~l-----~~K~~vf~~l~~~~~~~~ilasnTS~ 430 (714)
T TIGR02437 389 GF-----DNVDIVVEAVVENP-----KVKAAVLAEVEQHVREDAILASNTST 430 (714)
T ss_pred Hh-----cCCCEEEEcCcccH-----HHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 11 34688884433211 12468999999999999999998754
No 433
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=84.92 E-value=2 Score=42.47 Aligned_cols=34 Identities=26% Similarity=0.375 Sum_probs=24.9
Q ss_pred CCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECC
Q 019187 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEID 159 (345)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid 159 (345)
...+||++|+|+ |......+...++.+++.+|-|
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 456899999985 4444444444578899999998
No 434
>PRK10458 DNA cytosine methylase; Provisional
Probab=84.89 E-value=4.1 Score=41.57 Aligned_cols=44 Identities=18% Similarity=0.137 Sum_probs=37.0
Q ss_pred CceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhccc
Q 019187 127 PKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFP 171 (345)
Q Consensus 127 ~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~ 171 (345)
.-+++|+-||.|++..-+-.. +..-|.++|+|+...+.-+.+++
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a-G~~~v~a~Eid~~A~~TY~~N~~ 131 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI-GGQCVFTSEWNKHAVRTYKANWY 131 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc-CCEEEEEEechHHHHHHHHHHcC
Confidence 348999999999998887665 45678899999999999888874
No 435
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=84.80 E-value=3.8 Score=31.48 Aligned_cols=87 Identities=17% Similarity=0.168 Sum_probs=51.7
Q ss_pred eEEEEeccchHH--HHHHHhcC-CCcEEEEE-ECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 129 KVLVIGGGDGGV--LREVSRHS-SVEKIDIC-EIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 129 ~VL~IG~G~G~~--~~~ll~~~-~~~~V~~V-Eid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
+|.+||+|.-+. ++.++++. ...+|..+ +.+++-.+..++.++ +.+...|..+.++. .|+|
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~----------~~~~~~~~~~~~~~-----advv 65 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG----------VQATADDNEEAAQE-----ADVV 65 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT----------TEEESEEHHHHHHH-----TSEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc----------cccccCChHHhhcc-----CCEE
Confidence 577888887553 33345542 23688855 999987777665543 23444455566554 4999
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccCCCcEEE
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVS 238 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv 238 (345)
++-..... -.+.++.+ ..+.++.+++
T Consensus 66 ilav~p~~-------~~~v~~~i-~~~~~~~~vi 91 (96)
T PF03807_consen 66 ILAVKPQQ-------LPEVLSEI-PHLLKGKLVI 91 (96)
T ss_dssp EE-S-GGG-------HHHHHHHH-HHHHTTSEEE
T ss_pred EEEECHHH-------HHHHHHHH-hhccCCCEEE
Confidence 97654321 24677777 5666666665
No 436
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=84.79 E-value=6.8 Score=37.51 Aligned_cols=98 Identities=20% Similarity=0.220 Sum_probs=58.1
Q ss_pred CCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
...+||+.|+|. |..+..+++..+...|++++.+++-.+.++++ ... .-++. ...+..+.+.....+.+|+|
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~-g~~-~~~~~-----~~~~~~~~~~~~~~~~~d~v 247 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAA-GAD-VVVNG-----SDPDAAKRIIKAAGGGVDAV 247 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh-CCc-EEecC-----CCccHHHHHHHHhCCCCcEE
Confidence 457899987653 44555567776666899999888888877653 210 00010 01111122222212379998
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEe
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~ 240 (345)
+ |... .......+.++|+++|.++..
T Consensus 248 i-d~~g---------~~~~~~~~~~~l~~~g~~v~~ 273 (350)
T cd08240 248 I-DFVN---------NSATASLAFDILAKGGKLVLV 273 (350)
T ss_pred E-ECCC---------CHHHHHHHHHHhhcCCeEEEE
Confidence 8 3321 124578889999999999864
No 437
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=84.66 E-value=9.3 Score=36.45 Aligned_cols=99 Identities=23% Similarity=0.255 Sum_probs=56.7
Q ss_pred CCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
...+||+.|+|. |..+..+++..+...|.+++-+++-.+.++++ .. +.-+.....+.....+....+.+|+|
T Consensus 163 ~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~-g~------~~~~~~~~~~~~~~~~~~~~~~vd~v 235 (341)
T cd05281 163 SGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKM-GA------DVVINPREEDVVEVKSVTDGTGVDVV 235 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh-Cc------ceeeCcccccHHHHHHHcCCCCCCEE
Confidence 457888876543 44555567776554677777777766776653 21 10111111222211222224579988
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
+-... .....+.+.++|+++|.++...
T Consensus 236 ld~~g----------~~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 236 LEMSG----------NPKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred EECCC----------CHHHHHHHHHHhccCCEEEEEc
Confidence 84322 1345778889999999998653
No 438
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=84.65 E-value=8 Score=36.85 Aligned_cols=99 Identities=15% Similarity=0.289 Sum_probs=59.2
Q ss_pred CCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhC-CCCCccE
Q 019187 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV-PEGTYDA 203 (345)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~-~~~~yDv 203 (345)
..++||+.|+|. |..+..+++..+..+|.+++-+++-.+.+++. .. +.-+.....+..+.+... ..+.+|+
T Consensus 163 ~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~l-g~------~~~~~~~~~~~~~~~~~~~~~~~~d~ 235 (341)
T PRK05396 163 VGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKM-GA------TRAVNVAKEDLRDVMAELGMTEGFDV 235 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh-CC------cEEecCccccHHHHHHHhcCCCCCCE
Confidence 467888876554 44556677776665788888778777777652 21 100111112222333322 2356898
Q ss_pred EEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 204 Ii~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
|+--.. ....++.+.++|+++|.++...
T Consensus 236 v~d~~g----------~~~~~~~~~~~l~~~G~~v~~g 263 (341)
T PRK05396 236 GLEMSG----------APSAFRQMLDNMNHGGRIAMLG 263 (341)
T ss_pred EEECCC----------CHHHHHHHHHHHhcCCEEEEEe
Confidence 873221 1356788899999999998865
No 439
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=84.47 E-value=6.3 Score=40.47 Aligned_cols=110 Identities=14% Similarity=0.131 Sum_probs=67.3
Q ss_pred ceEEEEeccchHHHHHHHhcC----CCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccE
Q 019187 128 KKVLVIGGGDGGVLREVSRHS----SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (345)
Q Consensus 128 ~~VL~IG~G~G~~~~~ll~~~----~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDv 203 (345)
..|.+.-||+|+.+.+..++. ....+++-|+.+.+..+|+.++-.. +...+...+..+|...-.......+||+
T Consensus 219 ~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~--~~~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 219 DDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILH--NIDYANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHc--CCCccccCcccCCcCCCccccccccCCE
Confidence 589999999999988755421 2356899999999999999874221 1111223333344322101112456999
Q ss_pred EEEcCCCCC--C----Cc----c-----------ccCcHHHHHHHHhccCCCcEEEE
Q 019187 204 VIVDSSDPI--G----PA----Q-----------ELFEKPFFESVAKALRPGGVVST 239 (345)
Q Consensus 204 Ii~D~~~p~--~----~~----~-----------~l~t~ef~~~v~r~LkpgGvlv~ 239 (345)
|+.+++... . ++ . .--...|+..+...|++||...+
T Consensus 297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~ai 353 (501)
T TIGR00497 297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAI 353 (501)
T ss_pred EeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEE
Confidence 998775321 0 00 0 00135688999999999997543
No 440
>PRK07102 short chain dehydrogenase; Provisional
Probab=84.33 E-value=9.9 Score=34.20 Aligned_cols=75 Identities=19% Similarity=0.212 Sum_probs=43.4
Q ss_pred ceEEEEeccchHHHHHHHhcC--CCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhH------HhhCCCC
Q 019187 128 KKVLVIGGGDGGVLREVSRHS--SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAF------LKAVPEG 199 (345)
Q Consensus 128 ~~VL~IG~G~G~~~~~ll~~~--~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~------l~~~~~~ 199 (345)
++||+.|+. |+++..++++. ...+|++++.++.-.+...+.+... ...++.++..|..+. +... ..
T Consensus 2 ~~vlItGas-~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~~-~~ 75 (243)
T PRK07102 2 KKILIIGAT-SDIARACARRYAAAGARLYLAARDVERLERLADDLRAR----GAVAVSTHELDILDTASHAAFLDSL-PA 75 (243)
T ss_pred cEEEEEcCC-cHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHh----cCCeEEEEecCCCChHHHHHHHHHH-hh
Confidence 478888854 55666654431 2357999998876443322222211 234788888876542 2222 34
Q ss_pred CccEEEEcC
Q 019187 200 TYDAVIVDS 208 (345)
Q Consensus 200 ~yDvIi~D~ 208 (345)
.+|+++...
T Consensus 76 ~~d~vv~~a 84 (243)
T PRK07102 76 LPDIVLIAV 84 (243)
T ss_pred cCCEEEECC
Confidence 579999765
No 441
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=84.18 E-value=2.2 Score=44.46 Aligned_cols=102 Identities=19% Similarity=0.193 Sum_probs=63.5
Q ss_pred CCCceEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEech-----HhHHhhC-C
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRH-SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDG-----VAFLKAV-P 197 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~-~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~-----~~~l~~~-~ 197 (345)
.....||||||..|+...-..+. |...-|++|||-|.- .. |++.-+++|. +.-++.. .
T Consensus 43 ~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik------p~---------~~c~t~v~dIttd~cr~~l~k~l~ 107 (780)
T KOG1098|consen 43 EKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK------PI---------PNCDTLVEDITTDECRSKLRKILK 107 (780)
T ss_pred cccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc------cC---------CccchhhhhhhHHHHHHHHHHHHH
Confidence 45678999999999998887775 444568899996531 11 2232233332 1112111 1
Q ss_pred CCCccEEEEcCCCCCCCc-------cccCcHHHHHHHHhccCCCcEEEEec
Q 019187 198 EGTYDAVIVDSSDPIGPA-------QELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 198 ~~~yDvIi~D~~~p~~~~-------~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
.-+.|+|+.|.....+.. ....+...++.....|+-||.+++-.
T Consensus 108 t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkv 158 (780)
T KOG1098|consen 108 TWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKV 158 (780)
T ss_pred hCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCcccccc
Confidence 244699999987655432 12224456667778899999998754
No 442
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=84.15 E-value=9.5 Score=36.28 Aligned_cols=96 Identities=13% Similarity=0.154 Sum_probs=58.3
Q ss_pred CCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
...+||+.|+|. |..+..+++..+. +|++++.+++-.+.++++ .. +.-+.....|....+... ..+|+|
T Consensus 163 ~~~~vlV~g~g~iG~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~-g~------~~~i~~~~~~~~~~~~~~--~~~d~v 232 (333)
T cd08296 163 PGDLVAVQGIGGLGHLAVQYAAKMGF-RTVAISRGSDKADLARKL-GA------HHYIDTSKEDVAEALQEL--GGAKLI 232 (333)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHc-CC------cEEecCCCccHHHHHHhc--CCCCEE
Confidence 457899998544 4444556776654 799999998888888653 21 111111122333334433 358988
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
+..... ...++.+.++|+++|.++.-.
T Consensus 233 i~~~g~----------~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 233 LATAPN----------AKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred EECCCc----------hHHHHHHHHHcccCCEEEEEe
Confidence 832111 245777888999999998754
No 443
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=84.15 E-value=10 Score=34.79 Aligned_cols=94 Identities=18% Similarity=0.178 Sum_probs=58.1
Q ss_pred CCCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccE
Q 019187 125 PNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (345)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDv 203 (345)
....+||+.|+|. |..+..+++..+..+|++++.+++-.+.++++- .. + .+ .... .... ....+|+
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g-~~-----~-~~--~~~~-~~~~---~~~~~d~ 162 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALG-PA-----D-PV--AADT-ADEI---GGRGADV 162 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcC-CC-----c-cc--cccc-hhhh---cCCCCCE
Confidence 3467899998765 555566677665545899999888888877642 10 1 00 0000 0111 2456998
Q ss_pred EEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 204 Ii~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
|+..... ....+...++|+++|.++...
T Consensus 163 vl~~~~~----------~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 163 VIEASGS----------PSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred EEEccCC----------hHHHHHHHHHhcCCcEEEEEe
Confidence 8843221 245678888999999998643
No 444
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=83.97 E-value=1.7 Score=42.58 Aligned_cols=50 Identities=22% Similarity=0.282 Sum_probs=40.9
Q ss_pred CCCCceEEEEeccchHHHHHHHhcC--------CCcEEEEEECCHHHHHHHHhccccc
Q 019187 124 IPNPKKVLVIGGGDGGVLREVSRHS--------SVEKIDICEIDKMVVDVSKQFFPDV 173 (345)
Q Consensus 124 ~~~~~~VL~IG~G~G~~~~~ll~~~--------~~~~V~~VEid~~vi~~ar~~~~~~ 173 (345)
.|.+-.+++||.|.|.+++-+++.- ...++..||++++..+.=|+.+...
T Consensus 75 ~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 75 RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 3456799999999999998887741 3678999999999998888777654
No 445
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=83.95 E-value=15 Score=34.89 Aligned_cols=100 Identities=20% Similarity=0.219 Sum_probs=59.2
Q ss_pred CCCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhh-CCCCCcc
Q 019187 125 PNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKA-VPEGTYD 202 (345)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~-~~~~~yD 202 (345)
....+||+.|+|. |..+..+++..+...+++++.+++-.+.++++ .. +.-+.....+..+.+.. .+...+|
T Consensus 167 ~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~-ga------~~v~~~~~~~~~~~i~~~~~~~~~d 239 (345)
T cd08287 167 RPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREF-GA------TDIVAERGEEAVARVRELTGGVGAD 239 (345)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc-CC------ceEecCCcccHHHHHHHhcCCCCCC
Confidence 3457888876543 33445567776666789999888777777763 21 10111111122222322 2245699
Q ss_pred EEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 203 AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 203 vIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
+|+ |... ....++.+.+.|+++|.++...
T Consensus 240 ~il-~~~g---------~~~~~~~~~~~l~~~g~~v~~g 268 (345)
T cd08287 240 AVL-ECVG---------TQESMEQAIAIARPGGRVGYVG 268 (345)
T ss_pred EEE-ECCC---------CHHHHHHHHHhhccCCEEEEec
Confidence 888 3221 1356788899999999998754
No 446
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=83.92 E-value=0.57 Score=45.55 Aligned_cols=112 Identities=16% Similarity=0.121 Sum_probs=71.5
Q ss_pred CCCceEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHH-------hcccccccCCCCCCEEEEEechHhHHhhCC
Q 019187 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSK-------QFFPDVAVGFEDPRVTLHIGDGVAFLKAVP 197 (345)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar-------~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~ 197 (345)
...+-|+|=--|||+++..+++. ..-|.+.|||-.++...| .+|... +..+--+.++.+|.-.-.-..
T Consensus 207 ~pGdivyDPFVGTGslLvsaa~F--Ga~viGtDIDyr~vragrg~~~si~aNFkQY--g~~~~fldvl~~D~sn~~~rs- 281 (421)
T KOG2671|consen 207 KPGDIVYDPFVGTGSLLVSAAHF--GAYVIGTDIDYRTVRAGRGEDESIKANFKQY--GSSSQFLDVLTADFSNPPLRS- 281 (421)
T ss_pred CCCCEEecCccccCceeeehhhh--cceeeccccchheeecccCCCcchhHhHHHh--CCcchhhheeeecccCcchhh-
Confidence 34567899888999998887777 467999999998888433 233322 112223567788854432222
Q ss_pred CCCccEEEEcCCCCCC------------------------CccccCc-----HHHHHHHHhccCCCcEEEEec
Q 019187 198 EGTYDAVIVDSSDPIG------------------------PAQELFE-----KPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 198 ~~~yDvIi~D~~~p~~------------------------~~~~l~t-----~ef~~~v~r~LkpgGvlv~~~ 241 (345)
...||.||||++-... |....|+ -+.+.-.+++|..||.++...
T Consensus 282 n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~ 354 (421)
T KOG2671|consen 282 NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWL 354 (421)
T ss_pred cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEec
Confidence 5789999999864320 1111111 134555578999999998754
No 447
>PLN02702 L-idonate 5-dehydrogenase
Probab=83.88 E-value=6.3 Score=38.11 Aligned_cols=99 Identities=24% Similarity=0.248 Sum_probs=60.0
Q ss_pred CCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEE--EEechHhHHhh---CCCC
Q 019187 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTL--HIGDGVAFLKA---VPEG 199 (345)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v--~~~D~~~~l~~---~~~~ 199 (345)
...+||++|+|. |..+..+++..+...|++++.++.-.+.++++ ... ..+.+ ...+..+.+.. ...+
T Consensus 181 ~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~-g~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (364)
T PLN02702 181 PETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQL-GAD------EIVLVSTNIEDVESEVEEIQKAMGG 253 (364)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-CCC------EEEecCcccccHHHHHHHHhhhcCC
Confidence 457999997643 44556677776666789999998888888774 211 01111 11233232221 1135
Q ss_pred CccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 200 TYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 200 ~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
.+|+|+--... ...+..+.+.|+++|.++...
T Consensus 254 ~~d~vid~~g~----------~~~~~~~~~~l~~~G~~v~~g 285 (364)
T PLN02702 254 GIDVSFDCVGF----------NKTMSTALEATRAGGKVCLVG 285 (364)
T ss_pred CCCEEEECCCC----------HHHHHHHHHHHhcCCEEEEEc
Confidence 68988732211 245788889999999988644
No 448
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=83.85 E-value=3.5 Score=40.77 Aligned_cols=34 Identities=29% Similarity=0.417 Sum_probs=24.4
Q ss_pred CCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECC
Q 019187 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEID 159 (345)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid 159 (345)
...+||+||+|+ |......+...++.+++.+|-|
T Consensus 40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 356999999985 4444443444578899999998
No 449
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=83.84 E-value=9.3 Score=37.04 Aligned_cols=100 Identities=17% Similarity=0.201 Sum_probs=64.7
Q ss_pred CCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
....|.+.|+|. |....+-++..+..+|.+||++++-.+.|+++=. . .+-+|+ .+. .-..+.+.+..++.+|.-
T Consensus 192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGa-T--e~iNp~-d~~-~~i~evi~EmTdgGvDys 266 (375)
T KOG0022|consen 192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGA-T--EFINPK-DLK-KPIQEVIIEMTDGGVDYS 266 (375)
T ss_pred CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCc-c--eecChh-hcc-ccHHHHHHHHhcCCceEE
Confidence 456888999877 4444555777788999999999999999998621 1 112333 111 135556665546667765
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccCCC-cEEEEe
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALRPG-GVVSTQ 240 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~Lkpg-Gvlv~~ 240 (345)
+=.. + ..+.++++....+.| |.-++-
T Consensus 267 fEc~----G------~~~~m~~al~s~h~GwG~sv~i 293 (375)
T KOG0022|consen 267 FECI----G------NVSTMRAALESCHKGWGKSVVI 293 (375)
T ss_pred EEec----C------CHHHHHHHHHHhhcCCCeEEEE
Confidence 5211 1 246778888888888 876653
No 450
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=83.79 E-value=3.6 Score=41.48 Aligned_cols=32 Identities=13% Similarity=0.216 Sum_probs=25.4
Q ss_pred CceEEEEeccchHHHHHHHhc---CCCcEEEEEECCH
Q 019187 127 PKKVLVIGGGDGGVLREVSRH---SSVEKIDICEIDK 160 (345)
Q Consensus 127 ~~~VL~IG~G~G~~~~~ll~~---~~~~~V~~VEid~ 160 (345)
..+||+||||+ ++.++++. +++.+++.||-+.
T Consensus 20 ~s~VlliG~gg--lGsEilKNLvL~GIg~~tIvD~~~ 54 (425)
T cd01493 20 SAHVCLLNATA--TGTEILKNLVLPGIGSFTIVDGSK 54 (425)
T ss_pred hCeEEEEcCcH--HHHHHHHHHHHcCCCeEEEECCCc
Confidence 46999999874 77777663 7899999999774
No 451
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=83.51 E-value=2.8 Score=40.10 Aligned_cols=76 Identities=26% Similarity=0.312 Sum_probs=42.2
Q ss_pred EEEEeccchHHHHHHHhc---CCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEE----EEechHhH--Hhh-CCCC
Q 019187 130 VLVIGGGDGGVLREVSRH---SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTL----HIGDGVAF--LKA-VPEG 199 (345)
Q Consensus 130 VL~IG~G~G~~~~~ll~~---~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v----~~~D~~~~--l~~-~~~~ 199 (345)
||+-| |+|.++.++.++ .+..+++++|.|+.-+-..++.+... +.++++++ +.+|.++. +.. ....
T Consensus 1 VLVTG-a~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~---~~~~~v~~~~~~vigDvrd~~~l~~~~~~~ 76 (293)
T PF02719_consen 1 VLVTG-AGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSR---FPDPKVRFEIVPVIGDVRDKERLNRIFEEY 76 (293)
T ss_dssp EEEET-TTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHH---C--TTCEEEEE--CTSCCHHHHHHHHTT--
T ss_pred CEEEc-cccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhc---ccccCcccccCceeecccCHHHHHHHHhhc
Confidence 45555 557888887664 34578999999998777666655321 13345544 58888654 222 2345
Q ss_pred CccEEEEcCC
Q 019187 200 TYDAVIVDSS 209 (345)
Q Consensus 200 ~yDvIi~D~~ 209 (345)
+.|+|+.-+.
T Consensus 77 ~pdiVfHaAA 86 (293)
T PF02719_consen 77 KPDIVFHAAA 86 (293)
T ss_dssp T-SEEEE---
T ss_pred CCCEEEEChh
Confidence 8999997554
No 452
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=83.40 E-value=28 Score=34.56 Aligned_cols=110 Identities=14% Similarity=0.185 Sum_probs=59.6
Q ss_pred eEEEEeccchHHHH-HHHhcCCCcEEEEEECCHHHHHHHHhccccccc-CCC----CCCEEEEEe-chHhHHhhCCCCCc
Q 019187 129 KVLVIGGGDGGVLR-EVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAV-GFE----DPRVTLHIG-DGVAFLKAVPEGTY 201 (345)
Q Consensus 129 ~VL~IG~G~G~~~~-~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~-~~~----~~rv~v~~~-D~~~~l~~~~~~~y 201 (345)
+|-+||.|-=++.. .++.. + -+|+++|+|++.++..++-...... +++ ..+.++... |..+. -..-
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G-~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~-----~~~a 74 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-N-HEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEA-----YRDA 74 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-C-CcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhh-----hcCC
Confidence 58889998533332 33333 3 5799999999999988774332210 100 012222211 11111 1346
Q ss_pred cEEEEcCCCCCCCccccCc----HHHHHHHHhccCCCcEEEEeccchhh
Q 019187 202 DAVIVDSSDPIGPAQELFE----KPFFESVAKALRPGGVVSTQAESIWL 246 (345)
Q Consensus 202 DvIi~D~~~p~~~~~~l~t----~ef~~~v~r~LkpgGvlv~~~~s~~~ 246 (345)
|+|++..+.|.......+. .+.++.+.+ +++|.+++..+..+-.
T Consensus 75 d~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pg 122 (388)
T PRK15057 75 DYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVG 122 (388)
T ss_pred CEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCc
Confidence 9999887776422111222 344566666 7888777776654433
No 453
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=83.38 E-value=12 Score=36.68 Aligned_cols=100 Identities=13% Similarity=0.096 Sum_probs=58.1
Q ss_pred CCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEE---echHhHHhh-CCCCC
Q 019187 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHI---GDGVAFLKA-VPEGT 200 (345)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~---~D~~~~l~~-~~~~~ 200 (345)
...+||+.|+|. |..+..+++..+...|++++.+++-.++++++ .. +.-+.... .+....+.+ .....
T Consensus 203 ~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~-g~------~~~v~~~~~~~~~~~~~v~~~~~g~g 275 (384)
T cd08265 203 PGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEM-GA------DYVFNPTKMRDCLSGEKVMEVTKGWG 275 (384)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc-CC------CEEEcccccccccHHHHHHHhcCCCC
Confidence 457899987654 33344466666655799999888877777764 21 00011110 022222322 22346
Q ss_pred ccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 201 YDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 201 yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
+|+|+ |... . ....+..+.+.|+++|.++.-+
T Consensus 276 vDvvl-d~~g---~-----~~~~~~~~~~~l~~~G~~v~~g 307 (384)
T cd08265 276 ADIQV-EAAG---A-----PPATIPQMEKSIAINGKIVYIG 307 (384)
T ss_pred CCEEE-ECCC---C-----cHHHHHHHHHHHHcCCEEEEEC
Confidence 99887 4322 1 1245778888999999998643
No 454
>PLN02494 adenosylhomocysteinase
Probab=83.26 E-value=9.8 Score=38.85 Aligned_cols=87 Identities=14% Similarity=0.214 Sum_probs=51.1
Q ss_pred CCceEEEEeccchH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 126 NPKKVLVIGGGDGG-VLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 126 ~~~~VL~IG~G~G~-~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
..++|+++|+|.=+ .....++..+. +|+++|+|+.-...+... ++ .+. +..+.++ ..|+|
T Consensus 253 aGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~~~------G~-----~vv--~leEal~-----~ADVV 313 (477)
T PLN02494 253 AGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQALME------GY-----QVL--TLEDVVS-----EADIF 313 (477)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHHHhc------CC-----eec--cHHHHHh-----hCCEE
Confidence 46899999999743 23334444544 899999998654444332 11 111 2233332 36999
Q ss_pred EEcCCCCCCCccccCcHH-HHHHHHhccCCCcEEEEec
Q 019187 205 IVDSSDPIGPAQELFEKP-FFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~e-f~~~v~r~LkpgGvlv~~~ 241 (345)
+..... .. +.+...+.|++||+++.-+
T Consensus 314 I~tTGt----------~~vI~~e~L~~MK~GAiLiNvG 341 (477)
T PLN02494 314 VTTTGN----------KDIIMVDHMRKMKNNAIVCNIG 341 (477)
T ss_pred EECCCC----------ccchHHHHHhcCCCCCEEEEcC
Confidence 863211 12 2356667899999998654
No 455
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=83.04 E-value=3.7 Score=38.97 Aligned_cols=122 Identities=19% Similarity=0.195 Sum_probs=68.2
Q ss_pred ceEEEEeccc--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 128 KKVLVIGGGD--GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 128 ~~VL~IG~G~--G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
.+|+++|.|. |.+++.+.+......|++.|.+..-.+.+.+. .. .+.. ..+ ..... ....|+||
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l-gv-----~d~~----~~~---~~~~~-~~~aD~Vi 69 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL-GV-----IDEL----TVA---GLAEA-AAEADLVI 69 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc-Cc-----cccc----ccc---hhhhh-cccCCEEE
Confidence 5899999885 44555555554445678888888777766542 21 1110 011 11111 35579999
Q ss_pred EcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEeccchhhhhhHHHHHHHHHHhhcCCcceEEEEEEeecCC
Q 019187 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPS 278 (345)
Q Consensus 206 ~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s~~~~~~~~~~i~~~l~~~F~~~v~~~~~~vP~y~~ 278 (345)
+..+- . .+.++++++...|++|.+++ ..+|. -..+++.+++..+..+ .+...-|.+.+
T Consensus 70 vavPi--~-----~~~~~l~~l~~~l~~g~iv~-Dv~S~------K~~v~~a~~~~~~~~~-~~vg~HPM~G~ 127 (279)
T COG0287 70 VAVPI--E-----ATEEVLKELAPHLKKGAIVT-DVGSV------KSSVVEAMEKYLPGDV-RFVGGHPMFGP 127 (279)
T ss_pred EeccH--H-----HHHHHHHHhcccCCCCCEEE-ecccc------cHHHHHHHHHhccCCC-eeEecCCCCCC
Confidence 66542 2 15688888888898876665 33332 1345566666654433 22234465543
No 456
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=83.03 E-value=11 Score=37.59 Aligned_cols=70 Identities=16% Similarity=0.319 Sum_probs=45.8
Q ss_pred eEEEEeccchHHHHHHHhc--CCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHh--HHhhCCCCCccEE
Q 019187 129 KVLVIGGGDGGVLREVSRH--SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVA--FLKAVPEGTYDAV 204 (345)
Q Consensus 129 ~VL~IG~G~G~~~~~ll~~--~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~--~l~~~~~~~yDvI 204 (345)
+|+++|+| .+++.+++. ....+|+++|.|++.++.+++.+ .++++.+|+.+ .+.+..-+.+|.|
T Consensus 2 ~viIiG~G--~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~----------~~~~~~gd~~~~~~l~~~~~~~a~~v 69 (453)
T PRK09496 2 KIIIVGAG--QVGYTLAENLSGENNDVTVIDTDEERLRRLQDRL----------DVRTVVGNGSSPDVLREAGAEDADLL 69 (453)
T ss_pred EEEEECCC--HHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhc----------CEEEEEeCCCCHHHHHHcCCCcCCEE
Confidence 68999875 555555442 12357999999998877665421 36788888753 3443324679998
Q ss_pred EEcCCC
Q 019187 205 IVDSSD 210 (345)
Q Consensus 205 i~D~~~ 210 (345)
++...+
T Consensus 70 i~~~~~ 75 (453)
T PRK09496 70 IAVTDS 75 (453)
T ss_pred EEecCC
Confidence 876544
No 457
>PRK06949 short chain dehydrogenase; Provisional
Probab=82.93 E-value=21 Score=32.26 Aligned_cols=78 Identities=15% Similarity=0.120 Sum_probs=46.0
Q ss_pred CCceEEEEeccchHHHHHHHhc--CCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHh------HHhhC-
Q 019187 126 NPKKVLVIGGGDGGVLREVSRH--SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVA------FLKAV- 196 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~--~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~------~l~~~- 196 (345)
..++||+.|+ +|++++.+++. ....+|+++..+++-++.....+.. ...++.++..|..+ .+...
T Consensus 8 ~~k~ilItGa-sg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (258)
T PRK06949 8 EGKVALVTGA-SSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEA-----EGGAAHVVSLDVTDYQSIKAAVAHAE 81 (258)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----cCCcEEEEEecCCCHHHHHHHHHHHH
Confidence 3578888884 45566665543 1234799999988766555444432 12357777777632 12111
Q ss_pred -CCCCccEEEEcCC
Q 019187 197 -PEGTYDAVIVDSS 209 (345)
Q Consensus 197 -~~~~yDvIi~D~~ 209 (345)
..+..|+||....
T Consensus 82 ~~~~~~d~li~~ag 95 (258)
T PRK06949 82 TEAGTIDILVNNSG 95 (258)
T ss_pred HhcCCCCEEEECCC
Confidence 1256899998654
No 458
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=82.88 E-value=14 Score=35.21 Aligned_cols=100 Identities=22% Similarity=0.228 Sum_probs=58.6
Q ss_pred CCCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhC-CCCCcc
Q 019187 125 PNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV-PEGTYD 202 (345)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~-~~~~yD 202 (345)
.+..+||+.|+|. |..+..+++..+...|.+++-+++-.+.+++. .. +.-+.....+..+-+.+. ..+.+|
T Consensus 160 ~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~-g~------~~~v~~~~~~~~~~l~~~~~~~~~d 232 (340)
T TIGR00692 160 ISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKM-GA------TYVVNPFKEDVVKEVADLTDGEGVD 232 (340)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh-CC------cEEEcccccCHHHHHHHhcCCCCCC
Confidence 3467888866542 44455566766554588888888877777653 11 111111122333333322 245699
Q ss_pred EEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 203 AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 203 vIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
+|+-... ....+..+.+.|+++|.++...
T Consensus 233 ~vld~~g----------~~~~~~~~~~~l~~~g~~v~~g 261 (340)
T TIGR00692 233 VFLEMSG----------APKALEQGLQAVTPGGRVSLLG 261 (340)
T ss_pred EEEECCC----------CHHHHHHHHHhhcCCCEEEEEc
Confidence 8884321 1246788899999999988654
No 459
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=82.87 E-value=17 Score=35.30 Aligned_cols=108 Identities=15% Similarity=0.167 Sum_probs=59.8
Q ss_pred CCCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccE
Q 019187 125 PNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (345)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDv 203 (345)
....+||+.|+|. |..+..+++..+..+|++++.+++-.+.+++.-.. -+.....+..+.+.+...+.+|+
T Consensus 175 ~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~g~~--------~v~~~~~~~~~~i~~~~~~~~d~ 246 (375)
T cd08282 175 QPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGAI--------PIDFSDGDPVEQILGLEPGGVDR 246 (375)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCe--------EeccCcccHHHHHHHhhCCCCCE
Confidence 3467888877653 44455566666655788899998888888763211 01111123333333322356898
Q ss_pred EEEcCCCCCC-CccccCcHHHHHHHHhccCCCcEEEEe
Q 019187 204 VIVDSSDPIG-PAQELFEKPFFESVAKALRPGGVVSTQ 240 (345)
Q Consensus 204 Ii~D~~~p~~-~~~~l~t~ef~~~v~r~LkpgGvlv~~ 240 (345)
|+--...+.. ..........+..+.++|+++|.++..
T Consensus 247 v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 284 (375)
T cd08282 247 AVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIV 284 (375)
T ss_pred EEECCCCcccccccccchHHHHHHHHHHhhcCcEEEEE
Confidence 8743221100 000001123577888999999998753
No 460
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=82.85 E-value=4 Score=43.91 Aligned_cols=102 Identities=14% Similarity=0.198 Sum_probs=63.4
Q ss_pred ceEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccc-----cC-CCC-------CCEEEEEechHhH
Q 019187 128 KKVLVIGGGDGG--VLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVA-----VG-FED-------PRVTLHIGDGVAF 192 (345)
Q Consensus 128 ~~VL~IG~G~G~--~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~-----~~-~~~-------~rv~v~~~D~~~~ 192 (345)
++|.+||+|+-+ ++..++.. .-+|+.+|++++.++.+++...... .+ +.. .++++. .|. +-
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~~ 389 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASK--GVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDY-AG 389 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCH-HH
Confidence 689999999844 44445555 4589999999999887765543210 00 110 233322 221 11
Q ss_pred HhhCCCCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEeccc
Q 019187 193 LKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAES 243 (345)
Q Consensus 193 l~~~~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s 243 (345)
+ ..-|+||=..+... -..+++|+.+-+.++|+.+|+.|+.+
T Consensus 390 ~-----~~aDlViEav~E~l-----~~K~~vf~~l~~~~~~~~ilasNTSs 430 (715)
T PRK11730 390 F-----ERVDVVVEAVVENP-----KVKAAVLAEVEQKVREDTILASNTST 430 (715)
T ss_pred h-----cCCCEEEecccCcH-----HHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 1 34688884333211 12468999999999999999998754
No 461
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=82.81 E-value=4.6 Score=38.56 Aligned_cols=98 Identities=14% Similarity=0.269 Sum_probs=53.7
Q ss_pred ceEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhccc----cc-ccCC-C-------CCCEEEEEechHhH
Q 019187 128 KKVLVIGGGDGG--VLREVSRHSSVEKIDICEIDKMVVDVSKQFFP----DV-AVGF-E-------DPRVTLHIGDGVAF 192 (345)
Q Consensus 128 ~~VL~IG~G~G~--~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~----~~-~~~~-~-------~~rv~v~~~D~~~~ 192 (345)
.+|.+||+|.-+ ++..++++ ..+|+++|.+++.++.+++... .. ..+. + ..++++ ..|..+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~--G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~-~~~~~~a 79 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARA--GHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRV-TDSLADA 79 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHC--CCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEE-ECcHHHh
Confidence 379999998533 45555655 3489999999988776653211 00 0010 0 012332 2343222
Q ss_pred HhhCCCCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEE
Q 019187 193 LKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVS 238 (345)
Q Consensus 193 l~~~~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv 238 (345)
+ ...|+|+...+.... ....+++.+.+.++++-+++
T Consensus 80 ~-----~~ad~Vi~avpe~~~-----~k~~~~~~l~~~~~~~~ii~ 115 (308)
T PRK06129 80 V-----ADADYVQESAPENLE-----LKRALFAELDALAPPHAILA 115 (308)
T ss_pred h-----CCCCEEEECCcCCHH-----HHHHHHHHHHHhCCCcceEE
Confidence 2 346999977654311 13457777777665554444
No 462
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=82.69 E-value=15 Score=35.57 Aligned_cols=95 Identities=13% Similarity=0.127 Sum_probs=54.0
Q ss_pred CCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
...+||+.|+|. |..+..+++..+. ++++++.+++-.+.+.+.+.. + ..+...+. ..+... ...+|+|
T Consensus 180 ~g~~vlV~G~G~vG~~av~~Ak~~G~-~vi~~~~~~~~~~~~~~~~Ga-----~---~~i~~~~~-~~~~~~-~~~~D~v 248 (357)
T PLN02514 180 SGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSDKKREEALEHLGA-----D---DYLVSSDA-AEMQEA-ADSLDYI 248 (357)
T ss_pred CCCeEEEEcccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhcCC-----c---EEecCCCh-HHHHHh-cCCCcEE
Confidence 457899987544 4455667777654 677777776655544443331 1 01111121 122222 2358988
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
+ |... ....++.+.++|+++|.++...
T Consensus 249 i-d~~g---------~~~~~~~~~~~l~~~G~iv~~G 275 (357)
T PLN02514 249 I-DTVP---------VFHPLEPYLSLLKLDGKLILMG 275 (357)
T ss_pred E-ECCC---------chHHHHHHHHHhccCCEEEEEC
Confidence 7 3221 1245677888999999998754
No 463
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=82.48 E-value=14 Score=34.66 Aligned_cols=112 Identities=12% Similarity=0.139 Sum_probs=66.2
Q ss_pred CceEEEEeccchHHHHHHHhcCCCcEEEEEECC-HHHHHHHHhcccccccCCCCCCEEEEEechH-hHHhhCCCCCcc--
Q 019187 127 PKKVLVIGGGDGGVLREVSRHSSVEKIDICEID-KMVVDVSKQFFPDVAVGFEDPRVTLHIGDGV-AFLKAVPEGTYD-- 202 (345)
Q Consensus 127 ~~~VL~IG~G~G~~~~~ll~~~~~~~V~~VEid-~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~-~~l~~~~~~~yD-- 202 (345)
...|+.||||--.-+..+. .+ ..+..+|+| |++++.-++.++... .....+.+++..|.. .|........||
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~-~~--~~~~~~EvD~P~v~~~K~~~l~~~~-~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~ 157 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLP-WP--DGTRVFEVDQPAVLAFKEKVLAELG-AEPPAHRRAVPVDLRQDWPAALAAAGFDPT 157 (260)
T ss_pred CcEEEEeCCccccHHHhcC-CC--CCCeEEECCChHHHHHHHHHHHHcC-CCCCCceEEeccCchhhHHHHHHhCCCCCC
Confidence 5679999999766555442 22 257899999 788887777776431 112457888888875 233222122232
Q ss_pred ---EEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEeccch
Q 019187 203 ---AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESI 244 (345)
Q Consensus 203 ---vIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s~ 244 (345)
++++..-...-+... ...+++.+.+...||+.++....++
T Consensus 158 ~ptl~i~EGvl~YL~~~~--v~~ll~~i~~~~~~gs~l~~d~~~~ 200 (260)
T TIGR00027 158 APTAWLWEGLLMYLTEEA--VDALLAFIAELSAPGSRLAFDYVRP 200 (260)
T ss_pred CCeeeeecchhhcCCHHH--HHHHHHHHHHhCCCCcEEEEEeccc
Confidence 333222111111111 2467888888887999998875444
No 464
>PRK07340 ornithine cyclodeaminase; Validated
Probab=82.35 E-value=18 Score=34.61 Aligned_cols=113 Identities=17% Similarity=0.145 Sum_probs=58.9
Q ss_pred eEEEEEEcCcceEEEEcCeEeeeccchhHHHHHHHhcccccCCCCceEEEEeccchHHH--HHHHhcCCCcEEEEEECCH
Q 019187 83 NVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVL--REVSRHSSVEKIDICEIDK 160 (345)
Q Consensus 83 ~i~v~e~~~~g~~L~lDg~~q~~~~de~~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~--~~ll~~~~~~~V~~VEid~ 160 (345)
.+.+++...-.-..++||.....-+--..---...+ +..++.++|++||+|.=+-. ..++...+..+|.+++.++
T Consensus 84 ~i~l~d~~tG~p~a~~d~~~lT~~RTaA~sala~~~---La~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~ 160 (304)
T PRK07340 84 EVVVADAATGERLFLLDGPTVTGRRTAAVSLLAART---LAPAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTA 160 (304)
T ss_pred EEEEEECCCCcEEEEEcChhHHHHHHHHHHHHHHHH---hCCCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCH
Confidence 455555443223446777754332221110011111 12346789999999864322 2222334568999999998
Q ss_pred HHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEEEcCCC
Q 019187 161 MVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSD 210 (345)
Q Consensus 161 ~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi~D~~~ 210 (345)
+-.+...+.+... .+.+...|..+.+ ...|+|+.-.+.
T Consensus 161 ~~a~~~a~~~~~~-------~~~~~~~~~~~av-----~~aDiVitaT~s 198 (304)
T PRK07340 161 ASAAAFCAHARAL-------GPTAEPLDGEAIP-----EAVDLVVTATTS 198 (304)
T ss_pred HHHHHHHHHHHhc-------CCeeEECCHHHHh-----hcCCEEEEccCC
Confidence 7655444444321 1233345554444 357999976554
No 465
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=82.28 E-value=11 Score=35.84 Aligned_cols=96 Identities=19% Similarity=0.184 Sum_probs=55.9
Q ss_pred CCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEec--hHhHHhh-CCCCCc
Q 019187 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGD--GVAFLKA-VPEGTY 201 (345)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D--~~~~l~~-~~~~~y 201 (345)
..++||+.|+|. |..+..+++..+..+|+++.-+++-.+.++++ .. + .++..+ ..+-+.. .+...+
T Consensus 167 ~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~-g~------~---~~~~~~~~~~~~i~~~~~~~~~ 236 (340)
T cd05284 167 PGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAERL-GA------D---HVLNASDDVVEEVRELTGGRGA 236 (340)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHh-CC------c---EEEcCCccHHHHHHHHhCCCCC
Confidence 467999999554 22334455554435788888888877777653 21 0 111111 1111222 223469
Q ss_pred cEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 202 DAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 202 DvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
|+|+-.... ....+.+.++|+++|.++.-.
T Consensus 237 dvvld~~g~----------~~~~~~~~~~l~~~g~~i~~g 266 (340)
T cd05284 237 DAVIDFVGS----------DETLALAAKLLAKGGRYVIVG 266 (340)
T ss_pred CEEEEcCCC----------HHHHHHHHHHhhcCCEEEEEc
Confidence 988832221 256788889999999998643
No 466
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=82.10 E-value=9.6 Score=34.24 Aligned_cols=74 Identities=18% Similarity=0.203 Sum_probs=40.4
Q ss_pred ccccCCCCceEEEEeccchHHH--HHHHhcCCCcEEEEEECC--HHHHHHHHhcccccccCCCCCCEEEEEechHhHHhh
Q 019187 120 PLCSIPNPKKVLVIGGGDGGVL--REVSRHSSVEKIDICEID--KMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKA 195 (345)
Q Consensus 120 ~l~~~~~~~~VL~IG~G~G~~~--~~ll~~~~~~~V~~VEid--~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~ 195 (345)
|+...-..++||+||+|.=+.. +.+++. ..+|++|+.+ +++.+.+.+ .++.+...+ +...
T Consensus 3 Pl~l~l~~k~vLVIGgG~va~~ka~~Ll~~--ga~V~VIs~~~~~~l~~l~~~-----------~~i~~~~~~---~~~~ 66 (202)
T PRK06718 3 PLMIDLSNKRVVIVGGGKVAGRRAITLLKY--GAHIVVISPELTENLVKLVEE-----------GKIRWKQKE---FEPS 66 (202)
T ss_pred ceEEEcCCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEcCCCCHHHHHHHhC-----------CCEEEEecC---CChh
Confidence 4444446789999999875443 335554 3578888543 343333322 234443322 2111
Q ss_pred CCCCCccEEEEcCCC
Q 019187 196 VPEGTYDAVIVDSSD 210 (345)
Q Consensus 196 ~~~~~yDvIi~D~~~ 210 (345)
. -..+|+||+...+
T Consensus 67 ~-l~~adlViaaT~d 80 (202)
T PRK06718 67 D-IVDAFLVIAATND 80 (202)
T ss_pred h-cCCceEEEEcCCC
Confidence 1 2568998875544
No 467
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=82.08 E-value=2.9 Score=45.11 Aligned_cols=103 Identities=15% Similarity=0.101 Sum_probs=63.6
Q ss_pred CceEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccc-----cC-CCC-------CCEEEEEechHh
Q 019187 127 PKKVLVIGGGDGG--VLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVA-----VG-FED-------PRVTLHIGDGVA 191 (345)
Q Consensus 127 ~~~VL~IG~G~G~--~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~-----~~-~~~-------~rv~v~~~D~~~ 191 (345)
.++|-+||+|+-+ ++..++.. .-+|+.+|.+++.++.++++....- .+ +.. .+++.. .|. +
T Consensus 335 i~~v~ViGaG~MG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~ 410 (737)
T TIGR02441 335 VKTLAVLGAGLMGAGIAQVSVDK--GLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDY-S 410 (737)
T ss_pred ccEEEEECCCHhHHHHHHHHHhC--CCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCH-H
Confidence 3689999999744 34445555 4589999999999988776543220 00 110 133322 221 1
Q ss_pred HHhhCCCCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEeccc
Q 019187 192 FLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAES 243 (345)
Q Consensus 192 ~l~~~~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s 243 (345)
-+ ..-|+||=..+.. .-..+++|+.+-+.++|+.+|++|+.+
T Consensus 411 ~~-----~~aDlViEAv~E~-----l~~K~~vf~~l~~~~~~~~ilasNTSs 452 (737)
T TIGR02441 411 GF-----KNADMVIEAVFED-----LSLKHKVIKEVEAVVPPHCIIASNTSA 452 (737)
T ss_pred Hh-----ccCCeehhhcccc-----HHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 11 3458777332221 112468999999999999999998754
No 468
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=81.98 E-value=15 Score=34.54 Aligned_cols=95 Identities=17% Similarity=0.149 Sum_probs=57.5
Q ss_pred CCCceEEEEecc-chHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccE
Q 019187 125 PNPKKVLVIGGG-DGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (345)
Q Consensus 125 ~~~~~VL~IG~G-~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDv 203 (345)
....+||++|+| -|..+..+++..+ .+|+++..+++..+.+++. .. + .++..+........ .+.+|+
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a~~~G-~~v~~~~~~~~~~~~~~~~-g~------~---~~~~~~~~~~~~~~-~~~~d~ 228 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYARAMG-FETVAITRSPDKRELARKL-GA------D---EVVDSGAELDEQAA-AGGADV 228 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHh-CC------c---EEeccCCcchHHhc-cCCCCE
Confidence 345789999876 4555666677654 4789999998888877553 21 0 11111111111112 346898
Q ss_pred EEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 204 Ii~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
++.-... ....+.+.+.|+++|.++.-+
T Consensus 229 vi~~~~~----------~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 229 ILVTVVS----------GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred EEECCCc----------HHHHHHHHHhcccCCEEEEEC
Confidence 8832221 245678889999999988653
No 469
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=81.77 E-value=6.5 Score=40.83 Aligned_cols=81 Identities=21% Similarity=0.247 Sum_probs=55.2
Q ss_pred CCceEEEEeccchHHHHHHHhc---CCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHh--h-CCCC
Q 019187 126 NPKKVLVIGGGDGGVLREVSRH---SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLK--A-VPEG 199 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~---~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~--~-~~~~ 199 (345)
..|+||+-| |+|.++.++.+. .+.+++...|.|+.-+..-++.+... +.+.++..+++|.++.-+ . ...-
T Consensus 249 ~gK~vLVTG-agGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~---~~~~~~~~~igdVrD~~~~~~~~~~~ 324 (588)
T COG1086 249 TGKTVLVTG-GGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREK---FPELKLRFYIGDVRDRDRVERAMEGH 324 (588)
T ss_pred CCCEEEEeC-CCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhh---CCCcceEEEecccccHHHHHHHHhcC
Confidence 356777666 457777776553 35689999999998777666655432 235789999999876522 1 1245
Q ss_pred CccEEEEcCCC
Q 019187 200 TYDAVIVDSSD 210 (345)
Q Consensus 200 ~yDvIi~D~~~ 210 (345)
+.|+|+.-+..
T Consensus 325 kvd~VfHAAA~ 335 (588)
T COG1086 325 KVDIVFHAAAL 335 (588)
T ss_pred CCceEEEhhhh
Confidence 68999986543
No 470
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=81.75 E-value=6 Score=37.16 Aligned_cols=89 Identities=18% Similarity=0.077 Sum_probs=53.7
Q ss_pred eEEEEeccc--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEEE
Q 019187 129 KVLVIGGGD--GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIV 206 (345)
Q Consensus 129 ~VL~IG~G~--G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi~ 206 (345)
+|.+||+|. |.+++.+.+. ..+|+++|.+++.++.+++.- . +.....+. +. -...|+||+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~~g-~---------~~~~~~~~-~~-----~~~aDlVil 63 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIERG-L---------VDEASTDL-SL-----LKDCDLVIL 63 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHCC-C---------cccccCCH-hH-----hcCCCEEEE
Confidence 688999886 3455555555 247999999998888776531 0 11111121 11 134699997
Q ss_pred cCCCCCCCccccCcHHHHHHHHhccCCCcEEEEeccc
Q 019187 207 DSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAES 243 (345)
Q Consensus 207 D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s 243 (345)
..+.. ...++++.+...++++- +++..++
T Consensus 64 avp~~-------~~~~~~~~l~~~l~~~~-ii~d~~S 92 (279)
T PRK07417 64 ALPIG-------LLLPPSEQLIPALPPEA-IVTDVGS 92 (279)
T ss_pred cCCHH-------HHHHHHHHHHHhCCCCc-EEEeCcc
Confidence 65532 12467788888887764 4455544
No 471
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=81.74 E-value=2.7 Score=46.86 Aligned_cols=32 Identities=22% Similarity=0.432 Sum_probs=24.2
Q ss_pred CceEEEEeccchHHHHHHHh---cCCCcEEEEEECCH
Q 019187 127 PKKVLVIGGGDGGVLREVSR---HSSVEKIDICEIDK 160 (345)
Q Consensus 127 ~~~VL~IG~G~G~~~~~ll~---~~~~~~V~~VEid~ 160 (345)
..+||++|||+ ++.++++ ..++.+++.+|-|.
T Consensus 24 ~s~VLIiG~gG--LG~EiaKnL~laGVg~iti~D~d~ 58 (1008)
T TIGR01408 24 KSNVLISGMGG--LGLEIAKNLVLAGVKSVTLHDTEK 58 (1008)
T ss_pred hCcEEEECCCH--HHHHHHHHHHHcCCCeEEEEeCCe
Confidence 46999999974 5555554 35789999999875
No 472
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=81.73 E-value=26 Score=33.50 Aligned_cols=104 Identities=16% Similarity=0.270 Sum_probs=55.1
Q ss_pred eEEEEeccc-hHHHHH-HHhcCCCcEEEEEECCHHHHH-HHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEE
Q 019187 129 KVLVIGGGD-GGVLRE-VSRHSSVEKIDICEIDKMVVD-VSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (345)
Q Consensus 129 ~VL~IG~G~-G~~~~~-ll~~~~~~~V~~VEid~~vi~-~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi 205 (345)
+|.+||+|. |..... ++......++..+|++++..+ .+....... .+. +...+..+|.. .. ...|+|+
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~--~~~-~~~~i~~~d~~----~l--~~aDiVi 72 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGT--PFV-KPVRIYAGDYA----DC--KGADVVV 72 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccc--ccc-CCeEEeeCCHH----Hh--CCCCEEE
Confidence 689999987 443333 344433468999999986554 222211110 112 22455555522 22 3469999
Q ss_pred EcCCCCCCCccccC-----cHHHHHHHHhc---cCCCcEEEEec
Q 019187 206 VDSSDPIGPAQELF-----EKPFFESVAKA---LRPGGVVSTQA 241 (345)
Q Consensus 206 ~D~~~p~~~~~~l~-----t~ef~~~v~r~---LkpgGvlv~~~ 241 (345)
+-...+..+....+ +...++.+.+. ..|+|++++-+
T Consensus 73 ita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~t 116 (308)
T cd05292 73 ITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVT 116 (308)
T ss_pred EccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 87665543321111 22334444332 45889887754
No 473
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=81.56 E-value=17 Score=32.85 Aligned_cols=79 Identities=11% Similarity=0.113 Sum_probs=46.2
Q ss_pred CCceEEEEeccchHHHHHHHhcC--CCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHh------HHhhC-
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHS--SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVA------FLKAV- 196 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~--~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~------~l~~~- 196 (345)
..++||+.|+ +|++++.++++. ...+|.+++.++.-.+...+.+.. ...++.++..|..+ .+...
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~-----~~~~~~~~~~D~~~~~~~~~~~~~~~ 82 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKG-----QGLSAHALAFDVTDHDAVRAAIDAFE 82 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh-----cCceEEEEEccCCCHHHHHHHHHHHH
Confidence 3578998885 566666665531 235799999887655544443332 12356777777643 12111
Q ss_pred -CCCCccEEEEcCCC
Q 019187 197 -PEGTYDAVIVDSSD 210 (345)
Q Consensus 197 -~~~~yDvIi~D~~~ 210 (345)
.-+..|+||..+..
T Consensus 83 ~~~~~~d~li~~ag~ 97 (255)
T PRK07523 83 AEIGPIDILVNNAGM 97 (255)
T ss_pred HhcCCCCEEEECCCC
Confidence 12568999986643
No 474
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=81.52 E-value=21 Score=34.15 Aligned_cols=105 Identities=13% Similarity=0.197 Sum_probs=52.4
Q ss_pred ceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccC-CCCCCEEEEE-echHhHHhhCCCCCccEE
Q 019187 128 KKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVG-FEDPRVTLHI-GDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 128 ~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~-~~~~rv~v~~-~D~~~~l~~~~~~~yDvI 204 (345)
.+|-+||+|. |.....++...+..+|+++|+++...+ ++.. +..... ......++.. +|..+ + ..-|+|
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~-g~a~-d~~~~~~~~~~~~~i~~t~d~~~-~-----~~aDiV 73 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQ-GKAL-DMYEASPVGGFDTKVTGTNNYAD-T-----ANSDIV 73 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhH-HHHH-hhhhhhhccCCCcEEEecCCHHH-h-----CCCCEE
Confidence 4799999987 444333333322237999999876433 2211 111001 1111223433 55333 2 235999
Q ss_pred EEcCCCCCCCcc---cc--Cc----HHHHHHHHhccCCCcEEEEec
Q 019187 205 IVDSSDPIGPAQ---EL--FE----KPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 205 i~D~~~p~~~~~---~l--~t----~ef~~~v~r~LkpgGvlv~~~ 241 (345)
|+-...|..+.. .+ .+ .++.+.+.+. .|++++++-+
T Consensus 74 Iitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~-~p~~~iIv~t 118 (305)
T TIGR01763 74 VITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEH-SPNPIIVVVS 118 (305)
T ss_pred EEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEec
Confidence 987665543311 11 12 2344445555 4788877654
No 475
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=81.17 E-value=6.5 Score=40.31 Aligned_cols=101 Identities=13% Similarity=0.209 Sum_probs=56.2
Q ss_pred ceEEEEeccc--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhccc-------cccc-CCC-CCCEEEEEechHhHHhhC
Q 019187 128 KKVLVIGGGD--GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFP-------DVAV-GFE-DPRVTLHIGDGVAFLKAV 196 (345)
Q Consensus 128 ~~VL~IG~G~--G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~-------~~~~-~~~-~~rv~v~~~D~~~~l~~~ 196 (345)
++|-+||+|. ++++..++++ .-+|++.|.+++.++..++.+. .... .+. ..++++ ..|..+.+
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~--G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~-~~~~~ea~--- 78 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLA--GIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTF-CASLAEAV--- 78 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEe-eCCHHHHh---
Confidence 4799999995 3455556666 3489999999988765433211 1000 000 012322 23322222
Q ss_pred CCCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 197 PEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 197 ~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
..-|+|+...++... ....+|+.+...++++-+++.++
T Consensus 79 --~~aD~Vieavpe~~~-----vk~~l~~~l~~~~~~~~iI~SsT 116 (495)
T PRK07531 79 --AGADWIQESVPERLD-----LKRRVLAEIDAAARPDALIGSST 116 (495)
T ss_pred --cCCCEEEEcCcCCHH-----HHHHHHHHHHhhCCCCcEEEEcC
Confidence 335999976654311 12457777877787776655544
No 476
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=81.06 E-value=7.9 Score=43.34 Aligned_cols=108 Identities=14% Similarity=0.208 Sum_probs=58.2
Q ss_pred CCceEEEEeccc-hH-HHHHHHhcCCCc------------EEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHh
Q 019187 126 NPKKVLVIGGGD-GG-VLREVSRHSSVE------------KIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVA 191 (345)
Q Consensus 126 ~~~~VL~IG~G~-G~-~~~~ll~~~~~~------------~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~ 191 (345)
..++||+||+|- |. .++.+++.+... .|+++|++++-.+.+.+.++.. .-+.+-..|..+
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~------~~v~lDv~D~e~ 641 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENA------EAVQLDVSDSES 641 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCC------ceEEeecCCHHH
Confidence 357999999984 43 344455554432 4899999986665544433210 113332445444
Q ss_pred HHhhCCCCCccEEEEcCCCCCCCc---------ccc----CcHHHHHHHHhccCCCcEEEEec
Q 019187 192 FLKAVPEGTYDAVIVDSSDPIGPA---------QEL----FEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 192 ~l~~~~~~~yDvIi~D~~~p~~~~---------~~l----~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
...-. ...|+||+-++...+.. .++ ++.+-.+.+.+.-+.-|+.++..
T Consensus 642 L~~~v--~~~DaVIsalP~~~H~~VAkaAieaGkHvv~eky~~~e~~~L~e~Ak~AGV~~m~e 702 (1042)
T PLN02819 642 LLKYV--SQVDVVISLLPASCHAVVAKACIELKKHLVTASYVSEEMSALDSKAKEAGITILCE 702 (1042)
T ss_pred HHHhh--cCCCEEEECCCchhhHHHHHHHHHcCCCEEECcCCHHHHHHHHHHHHHcCCEEEEC
Confidence 33322 34899998776543210 111 23344455556666667665544
No 477
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=80.89 E-value=11 Score=36.22 Aligned_cols=71 Identities=20% Similarity=0.218 Sum_probs=39.1
Q ss_pred CceEEEEeccc-hHH-HHHHHhcCCCcEEEEEECCHHH--HHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCcc
Q 019187 127 PKKVLVIGGGD-GGV-LREVSRHSSVEKIDICEIDKMV--VDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYD 202 (345)
Q Consensus 127 ~~~VL~IG~G~-G~~-~~~ll~~~~~~~V~~VEid~~v--i~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yD 202 (345)
.-+|.+||+|. |.. ...+.+.+..+-+-++|+|++. .+.++++ . +.....|....+....-...|
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~-G----------i~~~~~~ie~LL~~~~~~dID 72 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRL-G----------VATSAEGIDGLLAMPEFDDID 72 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHc-C----------CCcccCCHHHHHhCcCCCCCC
Confidence 45899999998 443 3345555545445578999864 3445543 1 222234444444421114588
Q ss_pred EEEEcC
Q 019187 203 AVIVDS 208 (345)
Q Consensus 203 vIi~D~ 208 (345)
+|+.-.
T Consensus 73 iVf~AT 78 (302)
T PRK08300 73 IVFDAT 78 (302)
T ss_pred EEEECC
Confidence 887544
No 478
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=80.82 E-value=4 Score=43.81 Aligned_cols=104 Identities=16% Similarity=0.168 Sum_probs=63.7
Q ss_pred CceEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccc------cCCCC-------CCEEEEEechHh
Q 019187 127 PKKVLVIGGGDGG--VLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVA------VGFED-------PRVTLHIGDGVA 191 (345)
Q Consensus 127 ~~~VL~IG~G~G~--~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~------~~~~~-------~rv~v~~~D~~~ 191 (345)
-++|.+||+|.-+ ++..++... .-.|+.+|.+++.++.+++++...- ..+.. .++++. .|. +
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~-G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~-~ 385 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKA-GLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDY-R 385 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHc-CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CCh-H
Confidence 4689999999844 444455232 3589999999998888766543220 00110 133333 221 1
Q ss_pred HHhhCCCCCccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEeccc
Q 019187 192 FLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAES 243 (345)
Q Consensus 192 ~l~~~~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~~s 243 (345)
-+ ..-|+||=..+.. .-..+++|+.+-+.++|+.+|+.|+.+
T Consensus 386 ~~-----~~aDlViEav~E~-----~~~K~~v~~~le~~~~~~~ilasnTS~ 427 (708)
T PRK11154 386 GF-----KHADVVIEAVFED-----LALKQQMVAEVEQNCAPHTIFASNTSS 427 (708)
T ss_pred Hh-----ccCCEEeeccccc-----HHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 12 3468888433221 112468999999999999999998754
No 479
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=80.70 E-value=8.9 Score=36.08 Aligned_cols=93 Identities=12% Similarity=0.124 Sum_probs=51.9
Q ss_pred eEEEEeccchHHHH--HHHhcCCCcEEEEEECCHHHHHHHHhc-ccccccCCCCCCEEE---EEechHhHHhhCCCCCcc
Q 019187 129 KVLVIGGGDGGVLR--EVSRHSSVEKIDICEIDKMVVDVSKQF-FPDVAVGFEDPRVTL---HIGDGVAFLKAVPEGTYD 202 (345)
Q Consensus 129 ~VL~IG~G~G~~~~--~ll~~~~~~~V~~VEid~~vi~~ar~~-~~~~~~~~~~~rv~v---~~~D~~~~l~~~~~~~yD 202 (345)
+|++||+|..+... .+++. ..+|+.++. ++.++..++. +... . .+....+ ...| .... .+.+|
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~--g~~V~~~~r-~~~~~~~~~~g~~~~--~-~~~~~~~~~~~~~~----~~~~-~~~~d 70 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA--GRDVTFLVR-PKRAKALRERGLVIR--S-DHGDAVVPGPVITD----PEEL-TGPFD 70 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC--CCceEEEec-HHHHHHHHhCCeEEE--e-CCCeEEecceeecC----HHHc-cCCCC
Confidence 69999998855433 34444 347999988 6666655542 1110 0 0011111 0112 1111 26689
Q ss_pred EEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEE
Q 019187 203 AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVST 239 (345)
Q Consensus 203 vIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~ 239 (345)
+|++-...+. ..+.++.+...+.++.+++.
T Consensus 71 ~vilavk~~~-------~~~~~~~l~~~~~~~~~ii~ 100 (305)
T PRK12921 71 LVILAVKAYQ-------LDAAIPDLKPLVGEDTVIIP 100 (305)
T ss_pred EEEEEecccC-------HHHHHHHHHhhcCCCCEEEE
Confidence 9997655321 35778888888888876653
No 480
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=80.55 E-value=32 Score=28.60 Aligned_cols=73 Identities=21% Similarity=0.226 Sum_probs=40.7
Q ss_pred CCceEEEEeccchHHHHHHHh---cCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCcc
Q 019187 126 NPKKVLVIGGGDGGVLREVSR---HSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYD 202 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~---~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yD 202 (345)
+.++|+++|+|. +++.+++ ..+..+|++++.+++-.+...+.+... .+.....|..+. -+..|
T Consensus 18 ~~~~i~iiG~G~--~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~-------~~~~~~~~~~~~-----~~~~D 83 (155)
T cd01065 18 KGKKVLILGAGG--AARAVAYALAELGAAKIVIVNRTLEKAKALAERFGEL-------GIAIAYLDLEEL-----LAEAD 83 (155)
T ss_pred CCCEEEEECCcH--HHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhc-------ccceeecchhhc-----cccCC
Confidence 468999999864 3333332 222468999999987655443333210 011222332221 25689
Q ss_pred EEEEcCCCCC
Q 019187 203 AVIVDSSDPI 212 (345)
Q Consensus 203 vIi~D~~~p~ 212 (345)
+||+..+...
T Consensus 84 vvi~~~~~~~ 93 (155)
T cd01065 84 LIINTTPVGM 93 (155)
T ss_pred EEEeCcCCCC
Confidence 9998766544
No 481
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=80.51 E-value=25 Score=33.34 Aligned_cols=68 Identities=18% Similarity=0.238 Sum_probs=38.3
Q ss_pred cCeEeeeccchhHHHHHHHhcccccCCCCceEEEEeccchH-HHHHHHhcCCCcEEEEEECCHHHHHHHHh
Q 019187 99 DGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGG-VLREVSRHSSVEKIDICEIDKMVVDVSKQ 168 (345)
Q Consensus 99 Dg~~q~~~~de~~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~-~~~~ll~~~~~~~V~~VEid~~vi~~ar~ 168 (345)
||.+.-...|-.-+.+.|... ......++||+||+|.-+ .....+...+..+|+.++.+++-.+...+
T Consensus 101 ~g~l~G~NTD~~G~~~~l~~~--~~~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~ 169 (284)
T PRK12549 101 DGRRIGHNTDWSGFAESFRRG--LPDASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALAD 169 (284)
T ss_pred CCEEEEEcCCHHHHHHHHHhh--ccCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 455544444544444445321 112345799999987633 22233333457789999999765444433
No 482
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=80.47 E-value=7 Score=34.97 Aligned_cols=34 Identities=26% Similarity=0.442 Sum_probs=23.9
Q ss_pred CceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCH
Q 019187 127 PKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDK 160 (345)
Q Consensus 127 ~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~ 160 (345)
..+||++|||+ |......+-..++.+++.+|-|.
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 46999999985 33333333345789999999884
No 483
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=80.47 E-value=17 Score=34.23 Aligned_cols=97 Identities=18% Similarity=0.261 Sum_probs=59.9
Q ss_pred CceEEEEec--cchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 127 PKKVLVIGG--GDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 127 ~~~VL~IG~--G~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
..+||+.|+ +-|..+..+++..+..+|.+++.+++-.+.+++ +.. +.-+... .+....+.....+.+|+|
T Consensus 150 g~~vlV~g~~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~-~g~------~~~~~~~-~~~~~~i~~~~~~~~d~v 221 (336)
T cd08252 150 GKTLLIIGGAGGVGSIAIQLAKQLTGLTVIATASRPESIAWVKE-LGA------DHVINHH-QDLAEQLEALGIEPVDYI 221 (336)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCcEEEEEcCChhhHHHHHh-cCC------cEEEeCC-ccHHHHHHhhCCCCCCEE
Confidence 579999984 455666777777653689999988887777755 321 0001111 122233333323569988
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
+-.... ......+.++|+++|.++.-+
T Consensus 222 l~~~~~----------~~~~~~~~~~l~~~g~~v~~g 248 (336)
T cd08252 222 FCLTDT----------DQHWDAMAELIAPQGHICLIV 248 (336)
T ss_pred EEccCc----------HHHHHHHHHHhcCCCEEEEec
Confidence 832221 246788899999999998643
No 484
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=80.39 E-value=12 Score=39.51 Aligned_cols=76 Identities=18% Similarity=0.145 Sum_probs=44.1
Q ss_pred CCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHH---------HHHHHHhcccccccCCCCCCEEEEEec---hHhH
Q 019187 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKM---------VVDVSKQFFPDVAVGFEDPRVTLHIGD---GVAF 192 (345)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~---------vi~~ar~~~~~~~~~~~~~rv~v~~~D---~~~~ 192 (345)
+..+|++||.|+ |......+-..+..++.+||-|.. .++.|+++ ++.+.+..-+ ..++
T Consensus 128 R~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v~SNlnRIgEl~e~A~~~---------n~~v~v~~i~~~~~~dl 198 (637)
T TIGR03693 128 RNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAEEHALDRIHELAEIAEET---------DDALLVQEIDFAEDQHL 198 (637)
T ss_pred hcccEEEEecCchHHHHHHHHHhcCCCcEEEEeccccchhhhHHHHHHHHHHHh---------CCCCceEeccCCcchhH
Confidence 356899999998 444444444557889999987753 34455552 2233222222 2222
Q ss_pred HhhCCCCCccEEEEcCCCCC
Q 019187 193 LKAVPEGTYDAVIVDSSDPI 212 (345)
Q Consensus 193 l~~~~~~~yDvIi~D~~~p~ 212 (345)
..- -+.||+||+-+.++.
T Consensus 199 ~ev--~~~~DiVi~vsDdy~ 216 (637)
T TIGR03693 199 HEA--FEPADWVLYVSDNGD 216 (637)
T ss_pred HHh--hcCCcEEEEECCCCC
Confidence 222 366899998665543
No 485
>PLN02602 lactate dehydrogenase
Probab=80.37 E-value=16 Score=35.87 Aligned_cols=106 Identities=17% Similarity=0.253 Sum_probs=56.3
Q ss_pred ceEEEEeccc-hHHHHHHHh-cCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEE-echHhHHhhCCCCCccEE
Q 019187 128 KKVLVIGGGD-GGVLREVSR-HSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHI-GDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 128 ~~VL~IG~G~-G~~~~~ll~-~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~-~D~~~~l~~~~~~~yDvI 204 (345)
.+|.+||+|. |......+. ..-..++..+|++++..+-...-+.... .+.. ..++.. +| .+.++ .-|+|
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~-~~~~-~~~i~~~~d-y~~~~-----daDiV 109 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAA-AFLP-RTKILASTD-YAVTA-----GSDLC 109 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhh-hcCC-CCEEEeCCC-HHHhC-----CCCEE
Confidence 6999999987 655555433 3334689999998765432222122111 1222 245554 34 22233 35999
Q ss_pred EEcCCCCCCCc---cccC--cHHHHHHHHhc---cCCCcEEEEec
Q 019187 205 IVDSSDPIGPA---QELF--EKPFFESVAKA---LRPGGVVSTQA 241 (345)
Q Consensus 205 i~D~~~p~~~~---~~l~--t~ef~~~v~r~---LkpgGvlv~~~ 241 (345)
|+-+..+..+. ..|+ +.+.++.+.+. ..|+|++++-+
T Consensus 110 VitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt 154 (350)
T PLN02602 110 IVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS 154 (350)
T ss_pred EECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 98665543321 1111 12344444333 46888887755
No 486
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=80.21 E-value=10 Score=38.81 Aligned_cols=87 Identities=16% Similarity=0.204 Sum_probs=49.8
Q ss_pred CCceEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
..++|+++|+|. |......++..+ .+|+++|.|+.....+... .+++. +..+.+ ...|+|
T Consensus 253 aGKtVgVIG~G~IGr~vA~rL~a~G-a~ViV~e~dp~~a~~A~~~-----------G~~~~--~leell-----~~ADIV 313 (476)
T PTZ00075 253 AGKTVVVCGYGDVGKGCAQALRGFG-ARVVVTEIDPICALQAAME-----------GYQVV--TLEDVV-----ETADIF 313 (476)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCchhHHHHHhc-----------Cceec--cHHHHH-----hcCCEE
Confidence 468999999997 222223334444 4799999998755333321 11211 223333 347999
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEe
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~ 240 (345)
++.... ..+++ ....+.||||++|+--
T Consensus 314 I~atGt-----~~iI~----~e~~~~MKpGAiLINv 340 (476)
T PTZ00075 314 VTATGN-----KDIIT----LEHMRRMKNNAIVGNI 340 (476)
T ss_pred EECCCc-----ccccC----HHHHhccCCCcEEEEc
Confidence 865321 12223 2456679999988753
No 487
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=80.17 E-value=12 Score=37.61 Aligned_cols=36 Identities=25% Similarity=0.566 Sum_probs=26.3
Q ss_pred eEEEEeccchHHHHHHHh----c---CCCcEEEEEECCHHHHHH
Q 019187 129 KVLVIGGGDGGVLREVSR----H---SSVEKIDICEIDKMVVDV 165 (345)
Q Consensus 129 ~VL~IG~G~G~~~~~ll~----~---~~~~~V~~VEid~~vi~~ 165 (345)
+|.+||+|+. .+..+.+ . .+..+|..+|||++-++.
T Consensus 2 KI~iIGgGS~-~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~ 44 (425)
T cd05197 2 KIAIIGGGSS-FTPELVSGLLKTPEELPISEVTLYDIDEERLDI 44 (425)
T ss_pred EEEEECCchH-hHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHH
Confidence 6889999996 5555433 2 356899999999966554
No 488
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=80.01 E-value=22 Score=35.44 Aligned_cols=105 Identities=22% Similarity=0.254 Sum_probs=56.9
Q ss_pred eEEEEeccchHH--HHHHHhcCCCcEEEEEECCHHHHHHHHhccccc-ccCC--------CCCCEEEEEechHhHHhhCC
Q 019187 129 KVLVIGGGDGGV--LREVSRHSSVEKIDICEIDKMVVDVSKQFFPDV-AVGF--------EDPRVTLHIGDGVAFLKAVP 197 (345)
Q Consensus 129 ~VL~IG~G~G~~--~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~-~~~~--------~~~rv~v~~~D~~~~l~~~~ 197 (345)
+|-+||+|.-+. +..+++. .-+|+++|.++..++..++-.... ..++ ...++++ ..|..+.+
T Consensus 2 kI~vIGlG~~G~~lA~~La~~--G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~-~~~~~~~~---- 74 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADL--GHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRA-TTDYEDAI---- 74 (411)
T ss_pred EEEEECCCchhHHHHHHHHhc--CCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEE-ECCHHHHH----
Confidence 688999996443 3334444 347999999998877655421100 0000 0122332 22322222
Q ss_pred CCCccEEEEcCCCCCCC---ccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 198 EGTYDAVIVDSSDPIGP---AQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 198 ~~~yDvIi~D~~~p~~~---~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
...|+||+..+.|... ...-+-....+.+.+.|++|-+++..+
T Consensus 75 -~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~S 120 (411)
T TIGR03026 75 -RDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLES 120 (411)
T ss_pred -hhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 3469999877765421 111112345566777888877776654
No 489
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=79.86 E-value=20 Score=32.54 Aligned_cols=77 Identities=12% Similarity=0.132 Sum_probs=45.4
Q ss_pred CceEEEEeccchHHHHHHHhcC--CCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhH--H----hhC--
Q 019187 127 PKKVLVIGGGDGGVLREVSRHS--SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAF--L----KAV-- 196 (345)
Q Consensus 127 ~~~VL~IG~G~G~~~~~ll~~~--~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~--l----~~~-- 196 (345)
.++||+.| |+|+++..++++. ...+|++++-++.-.+...+.+.. ...++.++..|..+. + ...
T Consensus 12 ~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~-----~~~~~~~~~~Dl~d~~~i~~~~~~~~~ 85 (259)
T PRK08213 12 GKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEA-----LGIDALWIAADVADEADIERLAEETLE 85 (259)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh-----cCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 46788887 4566666665531 134799999887665555444322 124567777776431 1 111
Q ss_pred CCCCccEEEEcCC
Q 019187 197 PEGTYDAVIVDSS 209 (345)
Q Consensus 197 ~~~~yDvIi~D~~ 209 (345)
..+..|+||..+.
T Consensus 86 ~~~~id~vi~~ag 98 (259)
T PRK08213 86 RFGHVDILVNNAG 98 (259)
T ss_pred HhCCCCEEEECCC
Confidence 1246899998654
No 490
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=79.74 E-value=8.3 Score=34.82 Aligned_cols=78 Identities=14% Similarity=0.161 Sum_probs=44.1
Q ss_pred CCceEEEEeccchHHHHHHHhcC--CCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechH-----------hH
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHS--SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGV-----------AF 192 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~--~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~-----------~~ 192 (345)
..++||+.|+ +|+++..++++. ...+|.+++.++.-.+...+.+... ...++.++..|.. +.
T Consensus 11 ~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~ 85 (247)
T PRK08945 11 KDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAA----GGPQPAIIPLDLLTATPQNYQQLADT 85 (247)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhc----CCCCceEEEecccCCCHHHHHHHHHH
Confidence 4578888885 455555554431 1348899999876554444333321 2235666666652 11
Q ss_pred HhhCCCCCccEEEEcCC
Q 019187 193 LKAVPEGTYDAVIVDSS 209 (345)
Q Consensus 193 l~~~~~~~yDvIi~D~~ 209 (345)
+.+. -++.|+||..+.
T Consensus 86 ~~~~-~~~id~vi~~Ag 101 (247)
T PRK08945 86 IEEQ-FGRLDGVLHNAG 101 (247)
T ss_pred HHHH-hCCCCEEEECCc
Confidence 2221 357899998654
No 491
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=79.53 E-value=5 Score=40.78 Aligned_cols=90 Identities=18% Similarity=0.265 Sum_probs=55.3
Q ss_pred CCceEEEEeccchHHHHHHHhcCCCcEEE------EEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCC
Q 019187 126 NPKKVLVIGGGDGGVLREVSRHSSVEKID------ICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEG 199 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~ll~~~~~~~V~------~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~ 199 (345)
..++|++||||+=+-+..+--+....+|+ ++|.+....+.|++. ++ . .++..+.+ .
T Consensus 35 kgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~d------GF-----~--v~~~~Ea~-----~ 96 (487)
T PRK05225 35 KGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATEN------GF-----K--VGTYEELI-----P 96 (487)
T ss_pred CCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhc------CC-----c--cCCHHHHH-----H
Confidence 45899999999865544432222223444 444445555555432 11 1 13433443 3
Q ss_pred CccEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEe
Q 019187 200 TYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (345)
Q Consensus 200 ~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~ 240 (345)
+.|+|++-.++.. ...+++.+...|+||..|...
T Consensus 97 ~ADvVviLlPDt~-------q~~v~~~i~p~LK~Ga~L~fs 130 (487)
T PRK05225 97 QADLVINLTPDKQ-------HSDVVRAVQPLMKQGAALGYS 130 (487)
T ss_pred hCCEEEEcCChHH-------HHHHHHHHHhhCCCCCEEEec
Confidence 4699998777642 357889999999999999873
No 492
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=79.52 E-value=15 Score=34.75 Aligned_cols=99 Identities=20% Similarity=0.324 Sum_probs=61.2
Q ss_pred CCCceEEEEecc--chHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhC-CCCCc
Q 019187 125 PNPKKVLVIGGG--DGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV-PEGTY 201 (345)
Q Consensus 125 ~~~~~VL~IG~G--~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~-~~~~y 201 (345)
....+||+.|+| .|..+..+++..+. +|+++.-+++-.+.+++ +.. +.-+.....|..+.+... ..+.+
T Consensus 164 ~~~~~vlV~g~~~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~-~g~------~~v~~~~~~~~~~~~~~~~~~~~v 235 (341)
T cd08297 164 KPGDWVVISGAGGGLGHLGVQYAKAMGL-RVIAIDVGDEKLELAKE-LGA------DAFVDFKKSDDVEAVKELTGGGGA 235 (341)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHH-cCC------cEEEcCCCccHHHHHHHHhcCCCC
Confidence 346799999976 46667777887654 78999988877777754 321 100111111222223322 23569
Q ss_pred cEEEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 202 DAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 202 DvIi~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
|+|+.+... ......+.++|+++|.++.-+
T Consensus 236 d~vl~~~~~----------~~~~~~~~~~l~~~g~~v~~g 265 (341)
T cd08297 236 HAVVVTAVS----------AAAYEQALDYLRPGGTLVCVG 265 (341)
T ss_pred CEEEEcCCc----------hHHHHHHHHHhhcCCEEEEec
Confidence 999854432 245678889999999998753
No 493
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=79.51 E-value=5.9 Score=37.32 Aligned_cols=74 Identities=14% Similarity=0.185 Sum_probs=42.1
Q ss_pred CceEEEEeccchHHHHHHHhc---CCCcEEEEEECCHHHH-HHHHhcccccccC------------CCCCCEEEEEechH
Q 019187 127 PKKVLVIGGGDGGVLREVSRH---SSVEKIDICEIDKMVV-DVSKQFFPDVAVG------------FEDPRVTLHIGDGV 190 (345)
Q Consensus 127 ~~~VL~IG~G~G~~~~~ll~~---~~~~~V~~VEid~~vi-~~ar~~~~~~~~~------------~~~~rv~v~~~D~~ 190 (345)
..+||++|+|+ ++.+++++ .++.+++.+|-|..-. ++.++++-....+ --+|.+++...+
T Consensus 26 ~SrVLVVG~GG--LGsEVAKnLaLAGVGsItIvDdD~Ve~SNL~RQfl~~~dvGk~KAeaAa~~L~eLNP~V~V~~i~-- 101 (287)
T PTZ00245 26 HTSVALHGVAG--AAAEAAKNLVLAGVRAVAVADEGLVTDADVCTNYLMQGEAGGTRGARALGALQRLNPHVSVYDAV-- 101 (287)
T ss_pred hCeEEEECCCc--hHHHHHHHHHHcCCCeEEEecCCccchhhhccccccccccCCcHHHHHHHHHHHHCCCcEEEEcc--
Confidence 46999999874 44555443 5789999999885332 3333332211000 014666665544
Q ss_pred hHHhhCCCCCccEEEE
Q 019187 191 AFLKAVPEGTYDAVIV 206 (345)
Q Consensus 191 ~~l~~~~~~~yDvIi~ 206 (345)
..+. +...|++|++
T Consensus 102 ~rld--~~n~fqvvV~ 115 (287)
T PTZ00245 102 TKLD--GSSGTRVTMA 115 (287)
T ss_pred cccC--CcCCceEEEE
Confidence 2222 2567888875
No 494
>PRK06141 ornithine cyclodeaminase; Validated
Probab=79.25 E-value=45 Score=32.00 Aligned_cols=113 Identities=13% Similarity=0.163 Sum_probs=59.3
Q ss_pred eEEEEEEcCcceEEEEcCeEeeeccchhHHHHHHHhcccccCCCCceEEEEeccchHHHH--HHHhcCCCcEEEEEECCH
Q 019187 83 NVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLR--EVSRHSSVEKIDICEIDK 160 (345)
Q Consensus 83 ~i~v~e~~~~g~~L~lDg~~q~~~~de~~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~--~ll~~~~~~~V~~VEid~ 160 (345)
-|.+++...-....++||.....-+-- .-....+. .+..++.++|++||+|.=+-.. .++...+..+|.+++.++
T Consensus 84 ~v~l~d~~tG~p~ai~d~~~lT~~RTa-a~sala~~--~La~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~ 160 (314)
T PRK06141 84 TYLLFDGRTGEPLALVDGTELTARRTA-AASALAAS--YLARKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDP 160 (314)
T ss_pred EEEEEECCCCCEEEEEcCcchhcchhH-HHHHHHHH--HhCCCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCH
Confidence 455565543333456788765443321 11111111 1234567899999988644333 223334578999999997
Q ss_pred HHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEEEcCC
Q 019187 161 MVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSS 209 (345)
Q Consensus 161 ~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi~D~~ 209 (345)
+-.+...+.+... ..++.. ..+..+.+ ...|+|++-.+
T Consensus 161 ~~a~~~a~~~~~~-----g~~~~~-~~~~~~av-----~~aDIVi~aT~ 198 (314)
T PRK06141 161 AKAEALAAELRAQ-----GFDAEV-VTDLEAAV-----RQADIISCATL 198 (314)
T ss_pred HHHHHHHHHHHhc-----CCceEE-eCCHHHHH-----hcCCEEEEeeC
Confidence 6655444434321 112332 34444443 34799976444
No 495
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=79.07 E-value=3.8 Score=39.46 Aligned_cols=108 Identities=20% Similarity=0.228 Sum_probs=61.1
Q ss_pred ceEEEEeccchHHHHHHHhcC--------------------CCcEEEEEECC--HHHHHHHHhccccc-----------c
Q 019187 128 KKVLVIGGGDGGVLREVSRHS--------------------SVEKIDICEID--KMVVDVSKQFFPDV-----------A 174 (345)
Q Consensus 128 ~~VL~IG~G~G~~~~~ll~~~--------------------~~~~V~~VEid--~~vi~~ar~~~~~~-----------~ 174 (345)
.+||-||||.|+=...++... +.-+|++|||- ..|++.....+... .
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 599999999987444432221 01389999998 46777776655433 0
Q ss_pred cC--CCCCCEEEEEechHhHHhhC-----CCCCccEEEEcCCCCCCCccccC------cHHHHHHHHhccCCCcEEEEe
Q 019187 175 VG--FEDPRVTLHIGDGVAFLKAV-----PEGTYDAVIVDSSDPIGPAQELF------EKPFFESVAKALRPGGVVSTQ 240 (345)
Q Consensus 175 ~~--~~~~rv~v~~~D~~~~l~~~-----~~~~yDvIi~D~~~p~~~~~~l~------t~ef~~~v~r~LkpgGvlv~~ 240 (345)
.. -+.-++++.+.|....-.+. .....|+|-+-.+ ..+|| |..|+..+-..++||-+|.+-
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFT-----lNELfs~s~~kTt~FLl~Lt~~~~~GslLLVv 241 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFT-----LNELFSTSISKTTKFLLRLTDICPPGSLLLVV 241 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHH-----HHHHHhcChHHHHHHHHHHHhhcCCCcEEEEE
Confidence 00 11224667777765432210 0112333332111 12222 468999999999999887653
No 496
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=79.01 E-value=1.2 Score=42.63 Aligned_cols=96 Identities=17% Similarity=0.142 Sum_probs=66.3
Q ss_pred CCceEEEEeccchHHHH-HHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEE
Q 019187 126 NPKKVLVIGGGDGGVLR-EVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (345)
Q Consensus 126 ~~~~VL~IG~G~G~~~~-~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvI 204 (345)
....|.|+=.|-|..+. .+.+. +.+.|.++|++|..++..|+.+..+ + -..|..++.+|-+.- .++...|-|
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~a-gAk~V~A~EwNp~svEaLrR~~~~N--~-V~~r~~i~~gd~R~~---~~~~~AdrV 266 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTA-GAKTVFACEWNPWSVEALRRNAEAN--N-VMDRCRITEGDNRNP---KPRLRADRV 266 (351)
T ss_pred ccchhhhhhcccceEEeehhhcc-CccEEEEEecCHHHHHHHHHHHHhc--c-hHHHHHhhhcccccc---Cccccchhe
Confidence 34789999999999988 44444 6789999999999999999987654 1 234667777775543 135667888
Q ss_pred EEcCCCCCCCccccCcHHHHHHHHhccCCCcE
Q 019187 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGV 236 (345)
Q Consensus 205 i~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGv 236 (345)
.+.+-.. +++-+-...++|+|.|-
T Consensus 267 nLGLlPS--------se~~W~~A~k~Lk~egg 290 (351)
T KOG1227|consen 267 NLGLLPS--------SEQGWPTAIKALKPEGG 290 (351)
T ss_pred eeccccc--------cccchHHHHHHhhhcCC
Confidence 7654321 12345556677887543
No 497
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=78.99 E-value=17 Score=35.10 Aligned_cols=99 Identities=18% Similarity=0.222 Sum_probs=57.6
Q ss_pred CCceEEEEecc-chHHHHHHHhcCCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhh-CCCCCccE
Q 019187 126 NPKKVLVIGGG-DGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKA-VPEGTYDA 203 (345)
Q Consensus 126 ~~~~VL~IG~G-~G~~~~~ll~~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~-~~~~~yDv 203 (345)
...+||+.|+| -|..+..+++..+...+++++-+++..+.+++. .. +.-+.....+...-+.. .....+|+
T Consensus 187 ~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~-g~------~~v~~~~~~~~~~~l~~~~~~~~~d~ 259 (367)
T cd08263 187 PGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKEL-GA------THTVNAAKEDAVAAIREITGGRGVDV 259 (367)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh-CC------ceEecCCcccHHHHHHHHhCCCCCCE
Confidence 45689988654 244455567766665588998888887777552 21 00011111122222222 22456999
Q ss_pred EEEcCCCCCCCccccCcHHHHHHHHhccCCCcEEEEec
Q 019187 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (345)
Q Consensus 204 Ii~D~~~p~~~~~~l~t~ef~~~v~r~LkpgGvlv~~~ 241 (345)
|+ |.... ....+.+.++|+++|.++.-.
T Consensus 260 vl-d~vg~---------~~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 260 VV-EALGK---------PETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred EE-EeCCC---------HHHHHHHHHHHhcCCEEEEEc
Confidence 98 33211 135677889999999998653
No 498
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=78.99 E-value=55 Score=30.57 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=18.7
Q ss_pred CCCCcccCHHHHHHHhcCcHHHH
Q 019187 313 KGPLKFYNSEIHTAAFCLPTFAK 335 (345)
Q Consensus 313 ~~~l~yy~~~~h~a~f~lp~~~~ 335 (345)
..++..|.+....|+-.+|+.+-
T Consensus 166 ~~~~~~f~G~a~ea~~~fP~n~N 188 (265)
T PRK13304 166 KEPKVLFEGKAFEAVKKFPANIN 188 (265)
T ss_pred ccceEEEEecHHHHHHHCCCchh
Confidence 35778999999999999997553
No 499
>PRK08339 short chain dehydrogenase; Provisional
Probab=78.97 E-value=32 Score=31.58 Aligned_cols=78 Identities=12% Similarity=0.114 Sum_probs=45.1
Q ss_pred CceEEEEeccchHHHHHHHhc--CCCcEEEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhH------HhhC-C
Q 019187 127 PKKVLVIGGGDGGVLREVSRH--SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAF------LKAV-P 197 (345)
Q Consensus 127 ~~~VL~IG~G~G~~~~~ll~~--~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~------l~~~-~ 197 (345)
.+.+|+.|++. ++++++++. ....+|.+++.++.-++...+.+... ...++.++..|..+. +... .
T Consensus 8 ~k~~lItGas~-gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~Dv~~~~~i~~~~~~~~~ 82 (263)
T PRK08339 8 GKLAFTTASSK-GIGFGVARVLARAGADVILLSRNEENLKKAREKIKSE----SNVDVSYIVADLTKREDLERTVKELKN 82 (263)
T ss_pred CCEEEEeCCCC-cHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhh----cCCceEEEEecCCCHHHHHHHHHHHHh
Confidence 46788888654 445544432 11357999999877655554443321 134677777776432 2211 1
Q ss_pred CCCccEEEEcCC
Q 019187 198 EGTYDAVIVDSS 209 (345)
Q Consensus 198 ~~~yDvIi~D~~ 209 (345)
-+..|++|.++.
T Consensus 83 ~g~iD~lv~nag 94 (263)
T PRK08339 83 IGEPDIFFFSTG 94 (263)
T ss_pred hCCCcEEEECCC
Confidence 256899988654
No 500
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=78.92 E-value=9.2 Score=29.51 Aligned_cols=78 Identities=15% Similarity=0.181 Sum_probs=50.8
Q ss_pred EEEEECCHHHHHHHHhcccccccCCCCCCEEEEEechHhHHhhCCCCCccEEEEcCCCCCCCccccCcHHHHHHHHhccC
Q 019187 153 IDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALR 232 (345)
Q Consensus 153 V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~~yDvIi~D~~~p~~~~~~l~t~ef~~~v~r~Lk 232 (345)
|..||-++...+..++.+... +-..-....++.+.+.......+|+|++|...+... ..++++.+++.-
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~-----~~~~v~~~~~~~~~~~~~~~~~~d~iiid~~~~~~~-----~~~~~~~i~~~~- 69 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERA-----GYEEVTTASSGEEALELLKKHPPDLIIIDLELPDGD-----GLELLEQIRQIN- 69 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHT-----TEEEEEEESSHHHHHHHHHHSTESEEEEESSSSSSB-----HHHHHHHHHHHT-
T ss_pred cEEEECCHHHHHHHHHHHHhC-----CCCEEEEECCHHHHHHHhcccCceEEEEEeeecccc-----cccccccccccc-
Confidence 567899999999999888732 111223455665555443356699999997665433 357888887766
Q ss_pred CCcEEEEec
Q 019187 233 PGGVVSTQA 241 (345)
Q Consensus 233 pgGvlv~~~ 241 (345)
++..+++-+
T Consensus 70 ~~~~ii~~t 78 (112)
T PF00072_consen 70 PSIPIIVVT 78 (112)
T ss_dssp TTSEEEEEE
T ss_pred ccccEEEec
Confidence 666555543
Done!