RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 019188
(345 letters)
>2wu9_A 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine oxidation, fatty
acid metabolism, oxylipin biosynthesis, plant lipid
metabolism; 1.50A {Arabidopsis thaliana} PDB: 2c7y_A
2c7z_A 2wua_A
Length = 442
Score = 586 bits (1513), Expect = 0.0
Identities = 308/343 (89%), Positives = 325/343 (94%)
Query: 1 MAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEG 60
MAAFYAGFPETV VRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMT NPMAWEG
Sbjct: 98 MAAFYAGFPETVAVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTTNPMAWEG 157
Query: 61 SVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDE 120
SVNP VK F QAQNCLLPMGVTSENVA RFGV+R+EQDQAAVDSHRKAAAATAAGKFKDE
Sbjct: 158 SVNPAVKKFAQAQNCLLPMGVTSENVAQRFGVSRQEQDQAAVDSHRKAAAATAAGKFKDE 217
Query: 121 IIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDG 180
IIPV TK+VDPKTGDEKP+T+SVDDGIRP T+++ L KLKPVFKKDGTTTAGNSSQVSDG
Sbjct: 218 IIPVKTKLVDPKTGDEKPITVSVDDGIRPTTTLASLGKLKPVFKKDGTTTAGNSSQVSDG 277
Query: 181 AGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDL 240
AGAVLLMKRSVAM+KGLP+LGVFRTFAAVGVDPAIMG+GPAVAIPAAVK+AGL+LDDIDL
Sbjct: 278 AGAVLLMKRSVAMQKGLPVLGVFRTFAAVGVDPAIMGIGPAVAIPAAVKAAGLELDDIDL 337
Query: 241 FEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDC 300
FEINEAFASQFVYCRNKLGLDPEKINVNGGA+AIGHPLG TGARCVATLLHEMKRRG+DC
Sbjct: 338 FEINEAFASQFVYCRNKLGLDPEKINVNGGAMAIGHPLGATGARCVATLLHEMKRRGKDC 397
Query: 301 RFGVISMCIGTGMGAAAVFERGDCADELCNVRKVESNNFLSKD 343
RFGV+SMCIGTGMGAAAVFERGD DEL N RKVE+ LSKD
Sbjct: 398 RFGVVSMCIGTGMGAAAVFERGDGVDELRNARKVEAQGLLSKD 440
>2iik_A 3-ketoacyl-COA thiolase, peroxisomal; fatty acid metabolism,
structural genomics, structural genom consortium, SGC,
transferase; 2.55A {Homo sapiens}
Length = 418
Score = 539 bits (1392), Expect = 0.0
Identities = 191/322 (59%), Positives = 247/322 (76%), Gaps = 2/322 (0%)
Query: 1 MAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEG 60
+A F + PETVP+ TVNRQCSSGLQAVA +A I+ G YDIG+ G+ESM++ G
Sbjct: 97 IAQFLSDIPETVPLSTVNRQCSSGLQAVASIAGGIRNGSYDIGMACGVESMSLADRGNPG 156
Query: 61 SVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDE 120
++ ++ E+A++CL+PMG+TSENVA RFG++R++QD A+ S +KAA A + G F+ E
Sbjct: 157 NITSRLMEKEKARDCLIPMGITSENVAERFGISREKQDTFALASQQKAARAQSKGCFQAE 216
Query: 121 IIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDG 180
I+PV T + D K G ++ +T++ D+GIRP+T++ LAKLKP FKKDG+TTAGNSSQVSDG
Sbjct: 217 IVPVTTTVHDDK-GTKRSITVTQDEGIRPSTTMEGLAKLKPAFKKDGSTTAGNSSQVSDG 275
Query: 181 AGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDL 240
A A+LL +RS A GLPILGV R++A VGV P IMG+GPA AIP A++ AGL + D+D+
Sbjct: 276 AAAILLARRSKAEELGLPILGVLRSYAVVGVPPDIMGIGPAYAIPVALQKAGLTVSDVDI 335
Query: 241 FEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDC 300
FEINEAFASQ YC KL L PEK+N GGA+A+GHPLG TGAR V TLL+E+KRRG+
Sbjct: 336 FEINEAFASQAAYCVEKLRLPPEKVNPLGGAVALGHPLGCTGARQVITLLNELKRRGKR- 394
Query: 301 RFGVISMCIGTGMGAAAVFERG 322
+GV+SMCIGTGMGAAAVFE
Sbjct: 395 AYGVVSMCIGTGMGAAAVFEYP 416
>1afw_A 3-ketoacetyl-COA thiolase; fatty acid metabolism; 1.80A
{Saccharomyces cerevisiae} SCOP: c.95.1.1 c.95.1.1 PDB:
1pxt_A
Length = 393
Score = 511 bits (1319), Expect = 0.0
Identities = 161/325 (49%), Positives = 215/325 (66%), Gaps = 17/325 (5%)
Query: 1 MAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMA--- 57
A +G P + P +NRQCSSGL AV D+A IK G DIG+ G+ESMT N
Sbjct: 81 AACLASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALGVESMTNNYKNVNP 140
Query: 58 WEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKF 117
+ +++ +A+ CL+PMG+T+ENVA F ++RK+QD+ A +S++KA A G F
Sbjct: 141 LGMISSEELQKNREAKKCLIPMGITNENVAANFKISRKDQDEFAANSYQKAYKAKNEGLF 200
Query: 118 KDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKD-GTTTAGNSSQ 176
+DEI+P+ D+G RPN + L+ ++P F KD GTTTAGN+SQ
Sbjct: 201 EDEILPIKLP---------DGSICQSDEGPRPNVTAESLSSIRPAFIKDRGTTTAGNASQ 251
Query: 177 VSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLD 236
VSDG VLL +RSVA + LP+LG + F VGV P IMGVGPA AIP +++ GLQ+
Sbjct: 252 VSDGVAGVLLARRSVANQLNLPVLGRYIDFQTVGVPPEIMGVGPAYAIPKVLEATGLQVQ 311
Query: 237 DIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRR 296
DID+FEINEAFA+Q +YC +KLG+D K+N GGA+A+GHPLG TGAR VAT+L E+K+
Sbjct: 312 DIDIFEINEAFAAQALYCIHKLGIDLNKVNPRGGAIALGHPLGCTGARQVATILRELKKD 371
Query: 297 GRDCRFGVISMCIGTGMGAAAVFER 321
+ GV+SMCIGTGMGAAA+F +
Sbjct: 372 ----QIGVVSMCIGTGMGAAAIFIK 392
>3goa_A 3-ketoacyl-COA thiolase; metabolism, fatty acid, phospholipid,
IDP01071, acyltransferase, cytoplasm, fatty acid
metabolism; 1.70A {Salmonella typhimurium}
Length = 387
Score = 421 bits (1086), Expect = e-148
Identities = 142/325 (43%), Positives = 186/325 (57%), Gaps = 13/325 (4%)
Query: 1 MAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEG 60
AA A P +VP TVNR C S +QA+ D A I G + + G+E M PM+
Sbjct: 71 NAALLAEIPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQVCLVGGVEHMGHVPMSHGV 130
Query: 61 SVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDE 120
+P + MG+T+E ++ G++R+ QDQ A SH +A AAT +G FK E
Sbjct: 131 DFHPGLS--RNVAKAAGMMGLTAEMLSRLHGISREMQDQFAARSHARAWAATQSGAFKTE 188
Query: 121 IIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKK-DGTTTAGNSSQVSD 179
IIP D + D+ IRP T+V L+ L+P F GT TAG SS +SD
Sbjct: 189 IIPTGGH-----DADGVLKQFNYDEVIRPETTVEALSTLRPAFDPVSGTVTAGTSSALSD 243
Query: 180 GAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDID 239
GA A+L+M S A GL R+ A VG DP+IMG GP A A+K AGL DID
Sbjct: 244 GAAAMLVMSESRARELGLKPRARIRSMAVVGCDPSIMGYGPVPASKLALKKAGLSASDID 303
Query: 240 LFEINEAFASQFVYCRNKLGLDP---EKINVNGGALAIGHPLGTTGARCVATLLHEMKRR 296
+FE+NEAFA+Q + C LGL EKIN+NGGA+A+GHPLG +GAR TL++ M+R+
Sbjct: 304 VFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLINLMERK 363
Query: 297 GRDCRFGVISMCIGTGMGAAAVFER 321
+FG+ +MCIG G G A VFER
Sbjct: 364 DA--QFGLATMCIGLGQGIATVFER 386
>1wdk_C 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrameric complex,
lyase, oxidoreductase/transferase complex, lyase; HET:
ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: c.95.1.1
c.95.1.1 PDB: 1wdl_C* 1wdm_C* 2d3t_C*
Length = 390
Score = 416 bits (1073), Expect = e-146
Identities = 137/325 (42%), Positives = 182/325 (56%), Gaps = 13/325 (4%)
Query: 1 MAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEG 60
MA+ P T +TV+R C S + A+ A AI G D+ + G+E M M
Sbjct: 74 MASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHMGHVSMM--H 131
Query: 61 SVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDE 120
V+P A MG+T+E + G++R++QD AV SH+ A AT GKFKDE
Sbjct: 132 GVDPNPHMSLYAAKASGMMGLTAEMLGKMHGISREQQDAFAVRSHQLAHKATVEGKFKDE 191
Query: 121 IIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK-KDGTTTAGNSSQVSD 179
IIP+ + D+ IRP+T++ LA LKP F K GT TAG SSQ++D
Sbjct: 192 IIPMQGY-----DENGFLKIFDYDETIRPDTTLESLAALKPAFNPKGGTVTAGTSSQITD 246
Query: 180 GAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDID 239
GA +++M A GL L V R+ A GVDPAIMG GP A A+K AGL + DID
Sbjct: 247 GASCMIVMSAQRAKDLGLEPLAVIRSMAVAGVDPAIMGYGPVPATQKALKRAGLNMADID 306
Query: 240 LFEINEAFASQFVYCRNKLGL---DPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRR 296
E+NEAFA+Q + L + EK+N++GGA+A+GHP G +GAR TLL+ MK+
Sbjct: 307 FIELNEAFAAQALPVLKDLKVLDKMNEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQN 366
Query: 297 GRDCRFGVISMCIGTGMGAAAVFER 321
G FG+ +MCIG G G A VFER
Sbjct: 367 GG--TFGLSTMCIGLGQGIATVFER 389
>3ss6_A Acetyl-COA acetyltransferase; structural genomics, csgid, center
for structural genomics O infectious diseases, alpha
beta; HET: CSO; 1.70A {Bacillus anthracis}
Length = 394
Score = 391 bits (1006), Expect = e-136
Identities = 130/336 (38%), Positives = 193/336 (57%), Gaps = 28/336 (8%)
Query: 1 MAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEG 60
AA AGFP+TV T+ RQCSSG+QA+ A I+ G ++ + G+E+M+ +P A +
Sbjct: 71 TAALAAGFPDTVTGYTIQRQCSSGMQAIMSAAMQIQLGVSEVVVAGGVEAMSSSPYALKQ 130
Query: 61 S------VNPKVK---------AFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSH 105
+ +++ + MG T+EN+ ++ +TR+EQD+ A+ SH
Sbjct: 131 HRWGQRLQHGEIRDTVWEVLEDPIHH-----IMMGETAENLVEQYEITREEQDEVALRSH 185
Query: 106 RKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKK 165
A A +G F D+I+P+ K K V S D+ R + + +LA LKP F+K
Sbjct: 186 TLALKAIESGYFDDQIVPITIK------ERRKEVVFSKDEHPRADITAEKLAGLKPAFRK 239
Query: 166 DGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIP 225
DG+ TAGN+S ++DG+ ++LM A KGL L ++ GVDP IMG+GPA AI
Sbjct: 240 DGSVTAGNASGLNDGSAVLVLMSEEKAKEKGLQPLARIVGYSVAGVDPKIMGIGPAPAIR 299
Query: 226 AAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARC 285
++ L+D DL EINEAFA+Q++ +L LD EK+NVNG + +GHP+G TGAR
Sbjct: 300 KGLEKVDWSLEDADLLEINEAFAAQYLAVEKELDLDREKVNVNGSGVGLGHPIGCTGARI 359
Query: 286 VATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 321
+L+HE+KRRG G+ S+C+G G+G A E
Sbjct: 360 TVSLIHELKRRGL--EKGIASLCVGGGIGVALFIEA 393
>1ulq_A Putative acetyl-COA acetyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; 3.00A
{Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1
Length = 401
Score = 387 bits (996), Expect = e-134
Identities = 146/344 (42%), Positives = 201/344 (58%), Gaps = 36/344 (10%)
Query: 1 MAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEG 60
MA AGFP V TVNR C SGL+AVA A AI AG + IG+G+ESM+ P A
Sbjct: 69 MALLLAGFPVEVAGCTVNRLCGSGLEAVAQAARAIWAGEGKVYIGSGVESMSRAPYAVPK 128
Query: 61 S--------------------VNPKVK-AFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQ 99
VNPK++ + MG T+EN+A +G+ R+EQD+
Sbjct: 129 PERGFPTGNLVMYDTTLGWRFVNPKMQALYGT-----ESMGETAENLAEMYGIRREEQDR 183
Query: 100 AAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKL 159
A+ SH+KA A G+F+DE++PV K ++ + + D+G R +TS+ +LA L
Sbjct: 184 FALLSHQKAVRAWEEGRFQDEVVPVPVK------RGKEEILVEQDEGPRRDTSLEKLAAL 237
Query: 160 KPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVG 219
+PVF++ GT TAGNSS ++DGA AVLL+ A GL L R A GV P IMG+G
Sbjct: 238 RPVFREGGTVTAGNSSPLNDGAAAVLLVSDDYAKAHGLRPLARVRAIAVAGVPPRIMGIG 297
Query: 220 PAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGL--DPEKINVNGGALAIGHP 277
P A A++ AGL D+ L E+NEAFA+Q + + L + +++N NGGA+A+GHP
Sbjct: 298 PVPATRKALERAGLSFSDLGLIELNEAFAAQALAVLREWSLSMEDQRLNPNGGAIALGHP 357
Query: 278 LGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 321
LG +GAR + TL+HEM+RR +FG+ +MCIG G G A V E
Sbjct: 358 LGASGARILTTLVHEMRRRKV--QFGLATMCIGVGQGIAVVVEG 399
>4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for
structural genomics of infec diseases, csgid, thiolase;
1.25A {Clostridium difficile}
Length = 396
Score = 385 bits (992), Expect = e-134
Identities = 132/337 (39%), Positives = 193/337 (57%), Gaps = 29/337 (8%)
Query: 1 MAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEG 60
A AG P P T+N C SGL++V+ + I G DI + G E+M+++P
Sbjct: 73 QIALGAGIPVEKPAMTINIVCGSGLRSVSMASQLIALGDADIMLVGGAENMSMSPYLVPS 132
Query: 61 S------VNPKVK----------AFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDS 104
+ + F MG+T+EN+A ++ +TR+EQD+ A+ S
Sbjct: 133 ARYGARMGDAAFVDSMIKDGLSDIFNN-----YHMGITAENIAEQWNITREEQDELALAS 187
Query: 105 HRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 164
KA A A GKF +EI+PV K G + + D+ I+P T++ +LAKL+P FK
Sbjct: 188 QNKAEKAQAEGKFDEEIVPVVIK------GRKGDTVVDKDEYIKPGTTMEKLAKLRPAFK 241
Query: 165 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAI 224
KDGT TAGN+S ++DGA +++M + A G+ L ++ GVDP IMG GP A
Sbjct: 242 KDGTVTAGNASGINDGAAMLVVMAKEKAEELGIEPLATIVSYGTAGVDPKIMGYGPVPAT 301
Query: 225 PAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGAR 284
A+++A + ++DIDL E NEAFA+Q V L +D K+NVNGGA+AIGHP+G +GAR
Sbjct: 302 KKALEAANMTIEDIDLVEANEAFAAQSVAVIRDLNIDMNKVNVNGGAIAIGHPIGCSGAR 361
Query: 285 CVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 321
+ TLL+EMKRR + G+ ++CIG GMG + +R
Sbjct: 362 ILTTLLYEMKRRDA--KTGLATLCIGGGMGTTLIVKR 396
>4e1l_A Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, transferase;
2.00A {Clostridium difficile}
Length = 395
Score = 384 bits (990), Expect = e-133
Identities = 134/337 (39%), Positives = 196/337 (58%), Gaps = 28/337 (8%)
Query: 1 MAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEG 60
A AG P +VP TVN+ C SGL++V A +I +G D+ I G E+M+ P
Sbjct: 71 QIAINAGIPNSVPSYTVNKLCGSGLKSVQLAAQSITSGENDVVIAGGTENMSQAPYIVPT 130
Query: 61 S------VNPKVK----------AFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDS 104
+ N + AF Q MG+T+EN+A +F TR+ QD+ A++S
Sbjct: 131 ARFGSKMGNITMVDSMLTDGLIDAFNQ-----YHMGITAENIATKFEFTREMQDKLALES 185
Query: 105 HRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 164
KA A +FK+EI+PV I + G TI D+ + + L+KLKP FK
Sbjct: 186 QNKAENAIKNNRFKEEIVPVDVLI---RRGK--IETIDKDEYPKLGMTFEGLSKLKPAFK 240
Query: 165 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAI 224
KDGT TAGN+S ++DGA ++LM + A G+ L +++A+ GV+P +MG GP A
Sbjct: 241 KDGTVTAGNASGINDGAAMLILMSQQKADELGIRPLAKIKSYASAGVEPEVMGTGPIPAT 300
Query: 225 PAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGAR 284
A+K AGL ++DIDL E NEAFA+Q + +N+L +D K+NVNGGA+A+GHP+G +GAR
Sbjct: 301 RKALKKAGLSINDIDLIEANEAFAAQALAVKNELQIDSSKLNVNGGAIALGHPIGASGAR 360
Query: 285 CVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 321
+ TL++EM++R G+ ++CIG G G + V R
Sbjct: 361 ILVTLIYEMQKRKV--ETGLATLCIGGGQGISMVVSR 395
>3svk_A Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 2.20A {Mycobacterium
avium}
Length = 407
Score = 384 bits (990), Expect = e-133
Identities = 124/345 (35%), Positives = 179/345 (51%), Gaps = 38/345 (11%)
Query: 1 MAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEG 60
A AG PET +NR C+SGL+AV A +++G+ D+ + G+ESM+ PM +G
Sbjct: 76 TAVLAAGLPETTGGVQLNRFCASGLEAVNTAAQKVRSGWDDLVLAGGVESMSRVPMGSDG 135
Query: 61 ---SVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKF 117
+ +P+ + +P G+ ++ +A G +R++ D A+ S +KAAAA + G F
Sbjct: 136 GAWATDPETNY----RIGFVPQGIGADLIATLEGFSREDVDAYALRSQQKAAAAWSGGYF 191
Query: 118 KDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTT-------- 169
++PV V + D+ +RP+T++ LAKLK F G
Sbjct: 192 AKSVVPV--------RDQNGLVILDHDEHMRPDTTMEGLAKLKTAFDGVGEMGGFDDVAL 243
Query: 170 -------------TAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIM 216
T GNSS + DGA VL+ +GL A G DP IM
Sbjct: 244 QKYHWVEKINHVHTGGNSSGIVDGAALVLVGSEKAGKSQGLTPRARIVATATSGSDPVIM 303
Query: 217 GVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGH 276
GP A + AGL +DDIDLFE+NEAFAS + + L + EK+NVNGGA+A+GH
Sbjct: 304 LTGPTPATRKVLDRAGLTIDDIDLFELNEAFASVVLKFQKDLNIPDEKLNVNGGAIAMGH 363
Query: 277 PLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 321
PLG TGA T++ E++RR R +I++CIG GMG A + ER
Sbjct: 364 PLGATGAMITGTMVDELERRNA--RRALITLCIGGGMGVATIIER 406
>2vu1_A Acetyl-COA acetyltransferase; acyltransferase, PHB biosynthesis,
thiolase FOL; HET: CSO OPI; 1.51A {Zoogloea ramigera}
PDB: 1nl7_A* 1ou6_A* 2vu0_A* 1m4s_A* 2vu2_A* 2wkv_A*
2wku_A* 1m1t_A 1m3k_A 1m1o_A 1m3z_A* 2vtz_A* 2wl5_A*
2wkt_A* 2wl4_A* 1m4t_A* 2wl6_A 1qfl_A* 1dlv_A* 1dlu_A*
...
Length = 392
Score = 374 bits (964), Expect = e-129
Identities = 143/339 (42%), Positives = 192/339 (56%), Gaps = 36/339 (10%)
Query: 2 AAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNP------ 55
AA AG P+ +N+ C SGL+AVA I G I + G+ESM++ P
Sbjct: 70 AAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLR 129
Query: 56 -------------MAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAV 102
M +G + AF MG T+ENVA ++ ++R EQD AV
Sbjct: 130 GGVKMGDFKMIDTMIKDGLTD----AFYG-----YHMGTTAENVAKQWQLSRDEQDAFAV 180
Query: 103 DSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPV 162
S KA AA G+FKDEI+P K G + +T+ D+ IR ++ +AKL+P
Sbjct: 181 ASQNKAEAAQKDGRFKDEIVPFIVK------GRKGDITVDADEYIRHGATLDSMAKLRPA 234
Query: 163 FKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAV 222
F K+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +MG GP
Sbjct: 235 FDKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIP 294
Query: 223 AIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTG 282
A A++ AG ++ D+DL E NEAFA+Q LG DP +NVNGGA+AIGHP+G +G
Sbjct: 295 ASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASG 354
Query: 283 ARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 321
AR + TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 355 ARILNTLLFEMKRRGA--RKGLATLCIGGGMGVAMCIES 391
>1wl4_A Acetyl-coenzyme A acetyltransferase 2; thiolase fold; HET: COA;
1.55A {Homo sapiens} PDB: 1wl5_A
Length = 397
Score = 362 bits (931), Expect = e-124
Identities = 133/341 (39%), Positives = 194/341 (56%), Gaps = 38/341 (11%)
Query: 2 AAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNP------ 55
A+ AG P +VP + C SGL+AV +I G I + G+E+M+ P
Sbjct: 73 ASVGAGIPYSVPAWSCQMICGSGLKAVCLAVQSIGIGDSSIVVAGGMENMSKAPHLAYLR 132
Query: 56 -------------MAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAV 102
+ +G + AF MG+T+ENVA ++ V+R++QD+ AV
Sbjct: 133 TGVKIGEMPLTDSILCDGLTD----AFHN-----CHMGITAENVAKKWQVSREDQDKVAV 183
Query: 103 DSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPV 162
S + A AG F EI+PV V + G + + D+ R +++ ++KLKP
Sbjct: 184 LSQNRTENAQKAGHFDKEIVPVL---VSTRKGL---IEVKTDEFPRHGSNIEAMSKLKPY 237
Query: 163 FKKDGTT--TAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGP 220
F DGT T N+S ++DGA AV+LMK+S A ++GL L +++ VGV+P+IMG+GP
Sbjct: 238 FLTDGTGTVTPANASGINDGAAAVVLMKKSEADKRGLTPLARIVSWSQVGVEPSIMGIGP 297
Query: 221 AVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGT 280
AI AV AG L+D+D+FEINEAFA+ +LGL+PEK+N+ GGA+A+GHPLG
Sbjct: 298 IPAIKQAVTKAGWSLEDVDIFEINEAFAAVSAAIVKELGLNPEKVNIEGGAIALGHPLGA 357
Query: 281 TGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 321
+G R + TLLH ++R GR GV ++CIG GMG A +R
Sbjct: 358 SGCRILVTLLHTLERMGR--SRGVAALCIGGGMGIAMCVQR 396
>2ib8_A Acetyl-COA acetyltransferase; thiolase fold, potassium ION,
chloride, beta-alpha-beta-ALPH alpha-beta-BETA topology;
HET: MES; 1.85A {Homo sapiens} PDB: 2ib7_A* 2ib9_A*
2ibu_A* 2ibw_A* 2iby_A* 2f2s_A*
Length = 395
Score = 329 bits (847), Expect = e-112
Identities = 106/339 (31%), Positives = 176/339 (51%), Gaps = 38/339 (11%)
Query: 2 AAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNP------ 55
A AG P + P T+N+ C+SG++A+ + ++ G D+ + G+ESM+ P
Sbjct: 75 AVLGAGLPISTPCTTINKVCASGMKAIMMASQSLMCGHQDVMVAGGMESMSNVPYVMNRG 134
Query: 56 ------------MAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVD 103
+ +G + + + + MG +EN A + + R EQD A++
Sbjct: 135 STPYGGVKLEDLIVKDGLTD----VYNK-----IHMGSCAENTAKKLNIARNEQDAYAIN 185
Query: 104 SHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVF 163
S+ ++ AA AGKF +E+IPV +P + +D S++ KLK VF
Sbjct: 186 SYTRSKAAWEAGKFGNEVIPVTVT------VKGQPDVVVKEDEEYKRVDFSKVPKLKTVF 239
Query: 164 KKD-GTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAV 222
+K+ GT TA N+S ++DGA A++LM A R + L FA V+P + P
Sbjct: 240 QKENGTVTAANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAAVEPIDFPIAPVY 299
Query: 223 AIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTG 282
A +K GL+ +DI ++E+NEAF+ + L +DP+K+N+NGGA+++GHP+G +G
Sbjct: 300 AASMVLKDVGLKKEDIAMWEVNEAFSLVVLANIKMLEIDPQKVNINGGAVSLGHPIGMSG 359
Query: 283 ARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 321
AR V L H +K+ G+ S+C G G +A + ++
Sbjct: 360 ARIVGHLTHALKQGEY----GLASICNGGGGASAMLIQK 394
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.8 bits (108), Expect = 1e-05
Identities = 53/312 (16%), Positives = 84/312 (26%), Gaps = 124/312 (39%)
Query: 60 GSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKD 119
GS Q Q MG ++ + ++A D+H FKD
Sbjct: 1625 GS---------QEQG----MG---MDLYKTSKAAQDVWNRA--DNH-----------FKD 1655
Query: 120 EIIPVATKIVDPKTGDEKPVTISVDDG------IRPN-------TSVSELAKLKPVFKKD 166
IV PV +++ G IR N T V K + +FK+
Sbjct: 1656 TYGFSILDIVI-----NNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEI 1710
Query: 167 GTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRT-FAAVGVDPAIMGVGPAVAIP 225
+ + + + LL T F PA+ + A
Sbjct: 1711 NEHS----TSYTFRSEKGLL----------------SATQFT----QPALTLME--KAAF 1744
Query: 226 AAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLG------ 279
+KS GL + FA GH LG
Sbjct: 1745 EDLKSKGL-------IPADATFA--------------------------GHSLGEYAALA 1771
Query: 280 -TTGARCVATLLHEMKRRGRDCRFGVISMCIGT---GMGA------AAVFERGDCADELC 329
+ +L+ + RG + V +G GM A AA F + + +
Sbjct: 1772 SLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQ-EALQYVV 1830
Query: 330 NVRKVESNNFLS 341
+ +
Sbjct: 1831 ERVGKRTGWLVE 1842
Score = 35.0 bits (80), Expect = 0.036
Identities = 71/408 (17%), Positives = 109/408 (26%), Gaps = 130/408 (31%)
Query: 5 YAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAW--EGSV 62
Y + ++ S ++ D G +I + W S
Sbjct: 180 YHVLVGDL-IKFSAETLSELIRTTLDAEKVFTQGL-NI-------------LEWLENPSN 224
Query: 63 NPKVKAFEQAQ-NCLLPM-GVTS----ENVAHRFGVTRKE--QDQAAVDSHRK---AAAA 111
P +C P+ GV A G T E H + A A
Sbjct: 225 TPDKDYLLSIPISC--PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA 282
Query: 112 TAAGKFKDEIIPVATKIVD-------------PKTG-DEKPVTISVDDGIRPNT---SVS 154
A + K + P T + S+++ + S+S
Sbjct: 283 IAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS 342
Query: 155 ELAKLKPVFKK-DGT-TTAGNSSQVS----DGAGA-VL------LMKRSVAMRKGLPILG 201
L + + V + T + QV +GA V+ L ++ +RK
Sbjct: 343 NLTQ-EQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRK------ 395
Query: 202 VFRTFAAVGVD----------PAI-MGVGPAVAIP---AAVKSAGLQLDDIDLFEINEAF 247
A G+D P VA P + A ++ DL + N +F
Sbjct: 396 ---AKAPSGLDQSRIPFSERKLKFSNRFLP-VASPFHSHLLVPASDLINK-DLVKNNVSF 450
Query: 248 -ASQF---VYC-------RNKLGLDPEKI-------------NVNGGALAI---GHPLGT 280
A VY R G E+I A I G P G
Sbjct: 451 NAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG-PGGA 509
Query: 281 TGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFERGDCADEL 328
+G + L H K G R VI A + D+
Sbjct: 510 SG---LGVLTHRNK-DGTGVR--VIV---------AGTLDINP-DDDY 541
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 45.3 bits (107), Expect = 2e-05
Identities = 21/159 (13%), Positives = 46/159 (28%), Gaps = 28/159 (17%)
Query: 178 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-------VDPAIMGVGPAVAIPAAVKS 230
+ GAG ++M+ +A++ G+PI G+ A P + A ++VK
Sbjct: 1180 AQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPAPGKGILTTAREHHSSVKY 1239
Query: 231 AGLQLD--------DIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTG 282
A L+ +I + ++ + + +
Sbjct: 1240 ASPNLNMKYRKRQLVTREAQIKDWVENELEA-----------LKLEAEEIPSEDQNEFLL 1288
Query: 283 ARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 321
R + +E + + R + A
Sbjct: 1289 ER-TREIHNEAESQLRAAQQQ-WGNDFYKRDPRIAPLRG 1325
Score = 34.1 bits (78), Expect = 0.068
Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 13/78 (16%)
Query: 217 GVGPAVAIPAAVKSAGLQLDDIDLF----------EINEAFASQFVYCRNKLGLDP-EKI 265
+ A+ + GL +DD+ + + NE+ + LG +
Sbjct: 1316 RDPRIAPLRGALATYGLTIDDLGVASFHGTSTKANDKNESATINEMM--KHLGRSEGNPV 1373
Query: 266 NVNGGALAIGHPLGTTGA 283
GHP G GA
Sbjct: 1374 IGVFQKFLTGHPKGAAGA 1391
Score = 28.7 bits (64), Expect = 3.4
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 13 PVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMT 52
P++T C++ +++V I +G I I G +
Sbjct: 1098 PIKTPVGACATSVESVDIGVETILSGKARICIVGGYDDFQ 1137
>3s3l_A CERJ; acyltransferase, FABH homologue, KS III homologue, dimethyl
transfer, transferase; 2.00A {Streptomyces tendae} PDB:
3t5y_A* 3t6s_A* 3t8e_A 3t5y_B*
Length = 357
Score = 41.1 bits (97), Expect = 4e-04
Identities = 15/83 (18%), Positives = 23/83 (27%), Gaps = 19/83 (22%)
Query: 223 AIPAAVKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVNGGALAIG 275
A A++ AG ++DI + LGL E+ + G
Sbjct: 243 AKTQALEDAGTAIEDIAHAVIPVSRRGTGHELH-------DLLGLPDERTSWA-----YG 290
Query: 276 HPLGTTGARCVATLLHEMKRRGR 298
G GA L +
Sbjct: 291 RTTGHVGAGDQYAGLAHLVENAL 313
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 40.3 bits (94), Expect = 9e-04
Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 17/96 (17%)
Query: 178 SDGAGAVLLMKRSVAMRKGLPILGVFRTFA----AVGVDPAIMGVGPAVAIPAAVKSAGL 233
S G G ++M +A+ G+PI G+ + +G G G +
Sbjct: 1354 SQGCGVQVIMTAQLALEMGVPIYGIVAMTSTATDKIGRSVPAPGQGVLTTAREKSGNFPS 1413
Query: 234 QLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNG 269
L DI Y R +L L ++I
Sbjct: 1414 PLLDIK-------------YRRRQLELRRQQIKQWK 1436
Score = 28.0 bits (62), Expect = 6.1
Identities = 15/76 (19%), Positives = 23/76 (30%), Gaps = 13/76 (17%)
Query: 219 GPAVAIPAAVKSAGLQLDDID----------LFEINEAFASQFVYCRNKLGLDP-EKINV 267
+ A+ + GL +DD+ + NE+ LG +
Sbjct: 1498 SRIAPLRGALATWGLTIDDLGVASFHGTSTVANDKNESDVICQQL--KHLGRTKGNAVLG 1555
Query: 268 NGGALAIGHPLGTTGA 283
GHP G GA
Sbjct: 1556 IFQKYLTGHPKGAAGA 1571
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase,
acyltransferase, module 5, transferase; 2.73A
{Saccharopolyspora erythraea}
Length = 917
Score = 39.2 bits (92), Expect = 0.002
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Query: 178 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGV----GPA--VAIPAAVKSA 231
++GAG ++L + S A R+G P+L V R +AV D A G+ GPA I A+++A
Sbjct: 263 AEGAGVLVLQRLSAARREGRPVLAVLRG-SAVNQDGASNGLTAPSGPAQQRVIRRALENA 321
Query: 232 GLQLDDIDLFE 242
G++ D+D E
Sbjct: 322 GVRAGDVDYVE 332
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase,
acyltransferase, phosphopantetheine, transfera; 2.59A
{Saccharopolyspora erythraea}
Length = 915
Score = 39.1 bits (92), Expect = 0.002
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 178 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGV----GPA--VAIPAAVKSA 231
S+G VLL + S A R G +L V R +A+ D A G+ GPA I A++S
Sbjct: 241 SEGVTLVLLERLSEARRNGHEVLAVVRG-SALNQDGASNGLSAPSGPAQRRVIRQALESC 299
Query: 232 GLQLDDIDLFE 242
GL+ D+D E
Sbjct: 300 GLEPGDVDAVE 310
>3s21_A 3-oxoacyl-[ACP] synthase III; non-decarboxylative claisen
condensation reaction, transfera; HET: CER; 1.70A
{Xanthomonas campestris PV} PDB: 3s23_A* 3row_A 3s1z_A
3s20_A* 3fk5_A
Length = 345
Score = 36.8 bits (86), Expect = 0.008
Identities = 26/143 (18%), Positives = 42/143 (29%), Gaps = 37/143 (25%)
Query: 179 DGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGV------GPAV---------- 222
GA A+++ RS + G A + +
Sbjct: 192 CGAAAMVM-ARSELVPDAPRYKGGVTRSATEWNKLCRGNLDRMVTDTRLLLIEGIKLAQK 250
Query: 223 AIPAAVKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVNGGALAIG 275
AA + G ++++D F AF G+DP K+ G
Sbjct: 251 TFVAAKQVLGWAVEELDQFVIHQVSRPHTAAFV-------KSFGIDPAKVMTI-----FG 298
Query: 276 HPLGTTGARCVATLLHEMKRRGR 298
G G V +L ++K GR
Sbjct: 299 E-HGNIGPASVPIVLSKLKELGR 320
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.9 bits (79), Expect = 0.012
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 13/42 (30%)
Query: 188 KRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVK 229
K+++ K L + +A D A PA+AI A ++
Sbjct: 19 KQAL---KKLQ--ASLKLYAD---DSA-----PALAIKATME 47
Score = 27.6 bits (60), Expect = 4.0
Identities = 3/14 (21%), Positives = 6/14 (42%), Gaps = 2/14 (14%)
Query: 5 YAGFPETVPVRTVN 18
YA ++ P +
Sbjct: 32 YA--DDSAPALAIK 43
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 35.7 bits (82), Expect = 0.027
Identities = 19/145 (13%), Positives = 49/145 (33%), Gaps = 5/145 (3%)
Query: 178 SDGAGAVLLMKRSVAMRKGLPILGVFRTFA----AVGVDPAIMGVGPAVAIPAAVKSAGL 233
+ GAG ++M+ +A++ G+PI G+ A +G G G S
Sbjct: 1379 AQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPAPGKGILTTAREHHSSVKY 1438
Query: 234 QLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEM 293
++++ ++ ++ + + E + + + R + +E
Sbjct: 1439 ASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEAEEIPSEDQNEFLLER-TREIHNEA 1497
Query: 294 KRRGRDCRFGVISMCIGTGMGAAAV 318
+ + R + + A +
Sbjct: 1498 ESQLRAAQQQWGNDFYKRDPRIAPL 1522
>3ho9_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, platensimycin,
platencin A1, KAS2, acyltransferase, fatty acid
biosynthesis; HET: N3A; 1.90A {Escherichia coli} PDB:
3hnz_A* 3ho2_A* 3i8p_A* 3g11_A* 2gfx_A* 3g0y_A* 2gfv_A*
2gfw_A 2gfy_A* 1kas_A 1b3n_A
Length = 427
Score = 35.2 bits (82), Expect = 0.028
Identities = 29/121 (23%), Positives = 46/121 (38%), Gaps = 20/121 (16%)
Query: 178 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 232
DGAG ++L + A ++G I F P G G A+A+ A++ AG
Sbjct: 247 GDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAG 306
Query: 233 LQLDDID----------LFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTG 282
++ I + EA A + + G ++ V+ GH LG G
Sbjct: 307 IEASQIGYVNAHGTSTPAGDKAEAQAVKTI-----FGEAASRVLVSSTKSMTGHLLGAAG 361
Query: 283 A 283
A
Sbjct: 362 A 362
>1j3n_A 3-oxoacyl-(acyl-carrier protein) synthase II; condensing enzymes,
fatty acid elongation, acyl-carrier protein (ACP); HET:
CIT; 2.00A {Thermus thermophilus} SCOP: c.95.1.1
c.95.1.1
Length = 408
Score = 34.8 bits (81), Expect = 0.036
Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 20/121 (16%)
Query: 178 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 232
+GAG ++L A ++G I F +P G G A+A+ A+K AG
Sbjct: 230 GEGAGVLVLEAYEHAKKRGARIYAELVGFGRSADAHHITEPHPEGKGAALAMARALKDAG 289
Query: 233 LQLDDID----------LFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTG 282
+ + + + + E A + V G +++ V+ IGH LG G
Sbjct: 290 IAPEQVGYINAHGTSTPVGDRAEVLAIKRV-----FGDHAKRLMVSSTKSMIGHLLGAAG 344
Query: 283 A 283
A
Sbjct: 345 A 345
>2gqd_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; duplicated babababb
fold, transferase; 2.30A {Staphylococcus aureus}
Length = 437
Score = 34.8 bits (81), Expect = 0.037
Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 20/121 (16%)
Query: 178 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 232
+GAG +++ A +G I + G PA G G + A+ AA+ AG
Sbjct: 256 GEGAGILVIESLESAQARGANIYAEIVGYGTTGDAYHITAPAPEGEGGSRAMQAAMDDAG 315
Query: 233 LQLDDID----------LFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTG 282
++ D+ + ++NE A + G + + V+ GH LG TG
Sbjct: 316 IEPKDVQYLNAHGTSTPVGDLNEVKAIKNT-----FGEAAKHLKVSSTKSMTGHLLGATG 370
Query: 283 A 283
Sbjct: 371 G 371
>1e5m_A KAS II, beta ketoacyl acyl carrier protein synthase II; condensing
enzyme, biosynthetic role, carbon-carbon bond formation;
1.54A {Synechocystis SP} SCOP: c.95.1.1 c.95.1.1
Length = 416
Score = 34.8 bits (81), Expect = 0.038
Identities = 28/121 (23%), Positives = 46/121 (38%), Gaps = 20/121 (16%)
Query: 178 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 232
+G+G ++L + A+ +G I G +A P G G AI A+K +G
Sbjct: 236 GEGSGILILEELESALARGAKIYGEMVGYAMTCDAYHITAPVPDGRGATRAIAWALKDSG 295
Query: 233 LQLDDID----------LFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTG 282
L+ + + ++ E A + LG I V+ GH LG +G
Sbjct: 296 LKPEMVSYINAHGTSTPANDVTETRAIKQA-----LGNHAYNIAVSSTKSMTGHLLGGSG 350
Query: 283 A 283
Sbjct: 351 G 351
>3o04_A LMO2201 protein, beta-keto-acyl carrier protein synthase II; csgid,
structural genomics; 1.85A {Listeria monocytogenes}
Length = 413
Score = 34.4 bits (80), Expect = 0.049
Identities = 32/121 (26%), Positives = 47/121 (38%), Gaps = 20/121 (16%)
Query: 178 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 232
+GAG V+L + A +G I + A G PA G G A A+ A+ AG
Sbjct: 232 GEGAGIVILEEYEHAKARGAKIYAEIVGYGATGDAYHITAPAPNGEGAARAMKMAIDDAG 291
Query: 233 LQLDDID----------LFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTG 282
L D +D + E A + V G +K+ ++ GH LG +G
Sbjct: 292 LTPDKVDYINAHGTSTPYNDEYETQAIKTV-----FGEHAKKLAISSTKSMTGHTLGASG 346
Query: 283 A 283
Sbjct: 347 G 347
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain,
CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus
denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Length = 595
Score = 34.1 bits (78), Expect = 0.064
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 82 TSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVT 140
SE +T E D V + + A AAG ++ E+ V K+VD + T
Sbjct: 215 NSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ-ELNGV--KVVDGRKEASSLFT 270
>1u6e_A 3-oxoacyl-[acyl-carrier-protein] synthase III; transferase; 1.85A
{Mycobacterium tuberculosis} SCOP: c.95.1.2 c.95.1.2
PDB: 1u6s_A* 1m1m_A 1hzp_A* 2qnx_A* 2qnz_A* 2qo1_A*
2qx1_A* 2qo0_A* 2qny_A* 2ahb_A 2aj9_A
Length = 335
Score = 33.3 bits (77), Expect = 0.10
Identities = 32/138 (23%), Positives = 45/138 (32%), Gaps = 38/138 (27%)
Query: 178 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAV----------AIPAA 227
SDG A + I + G P + GPAV A
Sbjct: 191 SDGEQADAIR---------QDIDWITFAQNPSGPRPFVRLEGPAVFRWAAFKMGDVGRRA 241
Query: 228 VKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGT 280
+ +AG++ D ID+F INE L L P+ + N I H G
Sbjct: 242 MDAAGVRPDQIDVFVPHQANSRINELLV-------KNLQLRPDAVVAN----DIEH-TGN 289
Query: 281 TGARCVATLLHEMKRRGR 298
T A + + E+ G
Sbjct: 290 TSAASIPLAMAELLTTGA 307
>1ub7_A 3-oxoacyl-[acyl-carrier protein] synthase; fatty acid synthesis,
beta-ketoacyl-ACP synthase III, FABH; 2.30A {Thermus
thermophilus} SCOP: c.95.1.2 c.95.1.2
Length = 322
Score = 32.4 bits (75), Expect = 0.16
Identities = 34/151 (22%), Positives = 48/151 (31%), Gaps = 44/151 (29%)
Query: 179 DGAGAVLLMKR-------SVAMR---KGLPIL----GVFRTFAAVGVDPAIMGVGPAV-- 222
DG GA ++ K S + G L R + + G V
Sbjct: 157 DGGGAAVVGKVREGYGFRSFVLGADGTGAKELYHACVAPRLPDGTSMKNRLYMNGREVFK 216
Query: 223 --------AIPAAVKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINV 267
A A++ AGL +DI LF I +A +LGL E++ V
Sbjct: 217 FAVRVMNTATLEAIEKAGLTPEDIRLFVPHQANLRIIDAAR-------ERLGLPWERVAV 269
Query: 268 NGGALAIGHPLGTTGARCVATLLHEMKRRGR 298
N + G T + L E GR
Sbjct: 270 N-----VDR-YGNTSTASIPLALKEAVDAGR 294
>2x3e_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, transferase,
acyltransferase, lipid synthesis, multifun enzyme; 1.81A
{Pseudomonas aeruginosa}
Length = 331
Score = 32.5 bits (75), Expect = 0.18
Identities = 29/153 (18%), Positives = 44/153 (28%), Gaps = 46/153 (30%)
Query: 179 DGAGAVLLMKRSVAMRKGL------------PIL----GVFRTFAAVGVDPAIMGVGPAV 222
DGAGAV+L L +L ++ G AV
Sbjct: 159 DGAGAVVLRAGDAEEEGALLAFDLGSDGHQFDLLMTPAVSRAERSSGQASNYFRMDGKAV 218
Query: 223 ----------AIPAAVKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKI 265
++ + G Q D+ I A A ++L L E++
Sbjct: 219 FGQAVTQMSDSVRRVLDRVGWQASDLHHLVPHQANTRILAAVA-------DQLDLPVERV 271
Query: 266 NVNGGALAIGHPLGTTGARCVATLLHEMKRRGR 298
N I +G T A + L R+G
Sbjct: 272 VSN-----IAE-VGNTVAASIPLALAHGLRQGI 298
>3kzu_A 3-oxoacyl-(acyl-carrier-protein) synthase II; seattle structural
genomics center for infectious disease, ssgcid,
acyltransferase; 1.75A {Brucella melitensis} PDB: 3e60_A
Length = 428
Score = 32.5 bits (75), Expect = 0.21
Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 21/121 (17%)
Query: 178 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVD------PAIMGVGPAVAIPAAVKSA 231
+GAG V+L + A+ +G I + G D P G G + AA+K A
Sbjct: 248 GEGAGIVVLEELEHALARGAKIYAEVIGYGMSG-DAFHITAPTESGEGAQRCMVAALKRA 306
Query: 232 GLQLDDID---------LFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTG 282
G+ D+ID + + E A + V +G KI+++ +IGH LG G
Sbjct: 307 GIVPDEIDYINAHGTSTMADTIELGAVERV-----VGEAAAKISMSSTKSSIGHLLGAAG 361
Query: 283 A 283
A
Sbjct: 362 A 362
>2iwz_A 3-oxoacyl-[acyl-carrier-protein] synthase; mitochondria,
mitochondrion, lipid synthesis, fatty acid SYN fatty
acid biosynthesis; 1.65A {Homo sapiens} PDB: 2iwy_A
2c9h_A
Length = 438
Score = 32.1 bits (74), Expect = 0.24
Identities = 28/122 (22%), Positives = 46/122 (37%), Gaps = 22/122 (18%)
Query: 178 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVD------PAIMGVGPAVAIPAAVKSA 231
+GA ++L + A+++ I + G D P G G + AA+K A
Sbjct: 256 GEGAAVLVLEEYEHAVQRRARIYAEVLGYGLSG-DAGHITAPDPEGEGALRCMAAALKDA 314
Query: 232 GLQLDDID----------LFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTT 281
G+Q ++I L + E A + + + V+ A GH LG
Sbjct: 315 GVQPEEISYINAHATSTPLGDAAENKAIKHL-----FKDHAYALAVSSTKGATGHLLGAA 369
Query: 282 GA 283
GA
Sbjct: 370 GA 371
>2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5,
lipid metabolism, structural genomics; 2.10A {Aquifex
aeolicus}
Length = 309
Score = 31.7 bits (73), Expect = 0.32
Identities = 30/150 (20%), Positives = 51/150 (34%), Gaps = 53/150 (35%)
Query: 179 DGAGAVLLMKR-------SVAMR---KGLPILG-------------VFRTFAAVGVDPAI 215
DGAGAV++ + + M +L +F+ A ++
Sbjct: 158 DGAGAVVVTRSEDKSDILATRMYAEGSLEELLHADNCGYIRMKGRELFK-VAVRSMEEVC 216
Query: 216 MGVGPAVAIPAAVKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVN 268
++ AG++ +++ L I A A KL + EK+ VN
Sbjct: 217 R---------EVLEKAGVKPEEVSLVIPHQANVRIINALA-------EKLNIPKEKVFVN 260
Query: 269 GGALAIGHPLGTTGARCVATLLHEMKRRGR 298
I G T A + LHE + G+
Sbjct: 261 -----IQK-YGNTSAASIPIALHEAIKEGK 284
>1ox0_A Beta ketoacyl-acyl carrier protein synthase; transferase; 1.30A
{Streptococcus pneumoniae} SCOP: c.95.1.1 c.95.1.1 PDB:
1oxh_A 2alm_A 2rjt_A
Length = 430
Score = 31.3 bits (72), Expect = 0.48
Identities = 27/121 (22%), Positives = 44/121 (36%), Gaps = 23/121 (19%)
Query: 178 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 232
+G+G ++L A ++G IL + P G G AI A++ A
Sbjct: 251 GEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAE 310
Query: 233 LQLDDID----------LFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTG 282
+ + + E E+ A V LG +++ V+ GH LG G
Sbjct: 311 ISPEQVAYVNAHGTSTPANEKGESGAIVAV-----LG---KEVPVSSTKSFTGHLLGAAG 362
Query: 283 A 283
A
Sbjct: 363 A 363
>4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle
structural genomics center for infectious DI
transferase; 2.35A {Burkholderia xenovorans}
Length = 333
Score = 30.9 bits (71), Expect = 0.55
Identities = 26/136 (19%), Positives = 44/136 (32%), Gaps = 38/136 (27%)
Query: 178 SDGAGAVLLMKRSVAMRKGLPILG--------VFRTFAAVGVDPAIMGVGPAVAIPAAVK 229
+DG+ + +L + VF+ A ++ + A++
Sbjct: 196 ADGSHSNILCTPGNVNGGVVSGSAFLHMDGQAVFK-LAVNVLEKVAV---------EALE 245
Query: 230 SAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTG 282
A L + ID I ++ KLGL E++ V +G G T
Sbjct: 246 KANLSAEQIDWLIPHQANIRIMQSTC-------RKLGLPQERMIVT-----VGE-HGNTS 292
Query: 283 ARCVATLLHEMKRRGR 298
A + L R GR
Sbjct: 293 AASIPLALDVAVRDGR 308
>1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid
biosynthesis, transferase; 2.00A {Staphylococcus aureus
subsp} PDB: 3il7_A
Length = 313
Score = 30.9 bits (71), Expect = 0.59
Identities = 34/151 (22%), Positives = 53/151 (35%), Gaps = 54/151 (35%)
Query: 179 DGAGAVLLMKR-------SVAMR---KGLPIL--------------GVFRTFAAVGVDPA 214
DGAGAV++ + S M G L VF+ AV +
Sbjct: 159 DGAGAVIIGEVSEGRGIISYEMGSDGTGGKHLYLDKDTGKLKMNGREVFK--FAVRIMGD 216
Query: 215 IMGVGPAVAIPAAVKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINV 267
A V+ A L DDIDLF I E+ +LG+ +K++V
Sbjct: 217 --------ASTRVVEKANLTSDDIDLFIPHQANIRIMESAR-------ERLGISKDKMSV 261
Query: 268 NGGALAIGHPLGTTGARCVATLLHEMKRRGR 298
+ + G T A + + + + G+
Sbjct: 262 S-----VNK-YGNTSAASIPLSIDQELKNGK 286
>1tqy_A Beta-ketoacyl synthase/acyl transferase;
alpha-beta-alpha-beta-alpha, heterodimer, transferase;
2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1
Length = 424
Score = 30.9 bits (71), Expect = 0.64
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 5/67 (7%)
Query: 178 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 232
++GA +L A+ +G I +A G A I A+ +
Sbjct: 238 AEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGLKADGREMAETIRVALDESR 297
Query: 233 LQLDDID 239
DID
Sbjct: 298 TDATDID 304
>1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH, transferase;
HET: MLC; 1.46A {Escherichia coli} SCOP: c.95.1.2
c.95.1.2 PDB: 1hn9_A* 1hnh_A* 1hnd_A* 1hnk_A 1mzs_A*
2eft_A* 2gyo_A* 3il9_A 1ebl_A*
Length = 317
Score = 30.5 bits (70), Expect = 0.73
Identities = 18/83 (21%), Positives = 26/83 (31%), Gaps = 20/83 (24%)
Query: 223 AIPAAVKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVNGGALAIG 275
+ + + L +D I A A KLG+ + + V +
Sbjct: 223 IVDETLAANNLDRSQLDWLVPHQANLRIISATA-------KKLGMSMDNVVVT-----LD 270
Query: 276 HPLGTTGARCVATLLHEMKRRGR 298
G T A V L E R GR
Sbjct: 271 R-HGNTSAASVPCALDEAVRDGR 292
>3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural genomics,
synthetase; 1.60A {Burkholderia pseudomallei} PDB:
3gwe_A
Length = 365
Score = 30.6 bits (70), Expect = 0.76
Identities = 26/141 (18%), Positives = 43/141 (30%), Gaps = 33/141 (23%)
Query: 178 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGV---GPAV----------AI 224
+DG GA L+ ++ R+ A G + G V A
Sbjct: 213 TDGRGAPNLIVKAGLFREPKSADSAREHEDASGNVRTDEHLYMNGAEVMAFSLAEVPRAA 272
Query: 225 PAAVKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHP 277
+ AG ++ID F + +A K+ + K V + H
Sbjct: 273 DRLLALAGEPRENIDCFVLHQANRFMLDALR-------KKMKIPEHKFPVL-----MEH- 319
Query: 278 LGTTGARCVATLLHEMKRRGR 298
G T + + L M+ G
Sbjct: 320 CGNTVSSTLPLALETMRANGT 340
>3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid
biosynthesis, antibiotic, acyltransferase, cytoplasm,
lipid synthesis; 2.70A {Haemophilus influenzae}
Length = 323
Score = 30.5 bits (70), Expect = 0.76
Identities = 28/146 (19%), Positives = 41/146 (28%), Gaps = 39/146 (26%)
Query: 179 DGAGAVLLMKR------SVAMR---KGLPILGVFRTFAAVGVDPAIMGVGPAV------- 222
DGAGAV+L S + L + + + I G
Sbjct: 166 DGAGAVILEASEQEGIISTHLHASADKNNALVLAQPERGIEKSGYIEMQGNETFKLAVRE 225
Query: 223 ---AIPAAVKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVNGGAL 272
+ + + L D+D I A A KL +D ++ V
Sbjct: 226 LSNVVEETLLANNLDKKDLDWLVPHQANLRIITATA-------KKLEMDMSQVVVT---- 274
Query: 273 AIGHPLGTTGARCVATLLHEMKRRGR 298
+ A V L E R GR
Sbjct: 275 -LDK-YANNSAATVPVALDEAIRDGR 298
>1mzj_A Beta-ketoacylsynthase III; beta-ketosynthase, aromatic polyketide,
biosynthetic engineering, catalytic triad, transferase;
HET: COA; 2.10A {Streptomyces SP} SCOP: c.95.1.2
c.95.1.2
Length = 339
Score = 30.2 bits (69), Expect = 0.90
Identities = 23/107 (21%), Positives = 35/107 (32%), Gaps = 35/107 (32%)
Query: 202 VFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLF-------EINEAFASQFVYC 254
VFR +A V PA A++ AGL + D+ F I +
Sbjct: 225 VFR-WAVADVVPAAR---------EALEVAGLTVGDLVAFVPHQANLRIIDVLV------ 268
Query: 255 RNKLGLDPEK---INVNGGALAIGHPLGTTGARCVATLLHEMKRRGR 298
++LG+ + G T + VA L + R G
Sbjct: 269 -DRLGVPEHVVVSRDA--------EDTGNTSSASVALALDRLVRSGA 306
>4efi_A 3-oxoacyl-(acyl-carrier protein) synthase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.35A {Burkholderia xenovorans}
Length = 354
Score = 29.8 bits (68), Expect = 1.3
Identities = 17/83 (20%), Positives = 26/83 (31%), Gaps = 20/83 (24%)
Query: 223 AIPAAVKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVNGGALAIG 275
+ + AG D D F + + A K GL E++ VN IG
Sbjct: 249 LVSRTLDIAGRDKDSYDAFLFHQANLFMLKHLA-------KKAGLPAERVPVN-----IG 296
Query: 276 HPLGTTGARCVATLLHEMKRRGR 298
G T + L+ +
Sbjct: 297 E-YGNTSCASIPLLITTELKDRL 318
>3il6_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid
biosynthesis, antibiotic, acyltransferase, cytoplasm,
lipid synthesis; HET: B83; 2.50A {Enterococcus faecalis}
PDB: 3il5_A* 3il4_A*
Length = 321
Score = 29.8 bits (68), Expect = 1.3
Identities = 27/166 (16%), Positives = 48/166 (28%), Gaps = 44/166 (26%)
Query: 179 DGAGAVLLMKR------SVAMR---KGLPIL----GVFRTFAAVGVDPAIMGV---GPAV 222
DGA VL+ + ++ + L + + G A + G ++
Sbjct: 160 DGAAGVLIEAAETPHFLNEKLQADGQRWTALTSGYTINESPFYQGHKQASKTLQMEGRSI 219
Query: 223 ------AIPAAVKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVNG 269
+ + + + + +D I + A K + EK N
Sbjct: 220 FDFAIKDVSQNIL-SLVTDETVDYLLLHQANVRIIDKIA-------RKTKISREKFLTN- 270
Query: 270 GALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGA 315
+ G T A + LL E G G + TG G
Sbjct: 271 ----MDK-YGNTSAASIPILLDEAVENGT-LILGSQQRVVLTGFGG 310
>3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA,
transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa
PAO1} PDB: 3h76_A 3h77_A*
Length = 359
Score = 29.4 bits (67), Expect = 1.4
Identities = 12/53 (22%), Positives = 17/53 (32%), Gaps = 14/53 (26%)
Query: 223 AIPAAVKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVN 268
+ + L LDDID I +A +LG+ K V
Sbjct: 259 IAGEMLAAHELTLDDIDHVICHQPNLRILDAVQ-------EQLGIPQHKFAVT 304
>2key_A Putative phage integrase; protein structure, PSI, NESG, structural
genomics, unknown F protein structure initiative; NMR
{Bacteroides fragilis}
Length = 112
Score = 28.2 bits (63), Expect = 1.5
Identities = 5/27 (18%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 235 LDDIDLFEINEAFASQF-VYCRNKLGL 260
+ + E+ E F + +Y + L
Sbjct: 44 CEGLQFHELTEDFLRDYLIYMKKTLCN 70
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty
acid synthesis, acetylation, cytoplasm, fatty acid
biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB:
2jfk_A* 2jfd_A
Length = 965
Score = 29.8 bits (68), Expect = 1.6
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 14/73 (19%)
Query: 178 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVD-PAIMGV----GPA---VAIPAAVK 229
S+G AVLL K+S+A R + A D GV G + I + +
Sbjct: 227 SEGVVAVLLTKKSLARR----VYATILN-AGTNTDGFKEQGVTFPSGDIQEQL-IRSLYQ 280
Query: 230 SAGLQLDDIDLFE 242
SAG+ + + E
Sbjct: 281 SAGVAPESFEYIE 293
>4ddo_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgcid, struct
genomics, seattle structural genomics center for
infectious transferase; 1.90A {Burkholderia
vietnamiensis} PDB: 4f32_A*
Length = 451
Score = 29.4 bits (67), Expect = 1.6
Identities = 10/67 (14%), Positives = 23/67 (34%), Gaps = 5/67 (7%)
Query: 178 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 232
+GA V++ A+ +G + + G G A+ A++
Sbjct: 263 GEGAAMVVVESLDHALARGARPIAEIIGYGTTADAYHMTAGPDDGSGAMRAMKLALRMGD 322
Query: 233 LQLDDID 239
+ + +D
Sbjct: 323 VAPEQVD 329
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 29.8 bits (67), Expect = 1.8
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 12/72 (16%)
Query: 178 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIM-GV----GPA--VAIPAAVKS 230
++ AVLL K+S+A R + A D + GV G I +
Sbjct: 225 AEAVVAVLLTKKSLARR----VYATILN-AGTNTDGSKEQGVTFPSGDVQEQLIRSLYAP 279
Query: 231 AGLQLDDIDLFE 242
AG + ++ E
Sbjct: 280 AGPDPESLEYIE 291
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone,
actin-like ATPase domain, beta/BETA/alpha swiveling
domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP:
c.8.6.1 c.55.1.6 c.55.1.6
Length = 607
Score = 29.1 bits (65), Expect = 2.2
Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 14/133 (10%)
Query: 112 TAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDG---IRPNTSVSELAKLKPVFKKDGT 168
T G + +IP A + G+++ V +G I ++S A ++ + + GT
Sbjct: 251 TPQGDVQSRVIP-AGNLYIS--GEKRRGEADVAEGAEAIM--QAMSACAPVRDIRGEPGT 305
Query: 169 TTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGV---GPAVAIP 225
G +V + L ++ +L V TF V + G AV +
Sbjct: 306 HAGGMLERVRKVMAS--LTGHEMSAIYIQDLLAV-DTFIPRKVQGGMAGECAMENAVGMA 362
Query: 226 AAVKSAGLQLDDI 238
A VK+ LQ+ I
Sbjct: 363 AMVKADRLQMQVI 375
>2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold,
structural genomics, PSI, protein structure initiative;
2.40A {Mycobacterium tuberculosis}
Length = 434
Score = 29.0 bits (66), Expect = 2.6
Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 5/67 (7%)
Query: 178 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 232
+G +L+ A +G IL + V P G AI A++ AG
Sbjct: 257 GEGGALLLIETEEHAKARGANILARIMGASITSDGFHMVAPDPNGERAGHAITRAIQLAG 316
Query: 233 LQLDDID 239
L DID
Sbjct: 317 LAPGDID 323
Score = 27.1 bits (61), Expect = 9.8
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 13 PVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMA 57
V T C+SG +A+A I G D I G+E+ + +
Sbjct: 179 GVMTPVSACASGAEAIARAWQQIVLGEADAAICGGVET-RIEAVP 222
>2wge_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta ketoacyl synthase
I thiolactomycin, cytoplasm, transferase,
acyltransferase; HET: TLM; 1.80A {Mycobacterium
tuberculosis} PDB: 2wgd_A* 2wgg_A* 2wgf_A*
Length = 416
Score = 29.0 bits (66), Expect = 2.7
Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 5/67 (7%)
Query: 178 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 232
+ +L+ A +G L V PA GV A+ +++ AG
Sbjct: 240 GEAGALMLIETEEHAKARGAKPLARLLGAGITSDAFHMVAPAADGVRAGRAMTRSLELAG 299
Query: 233 LQLDDID 239
L DID
Sbjct: 300 LSPADID 306
>2lp1_A C99; alzheimer'S D membrane protein, transmembrane Pro; NMR {Homo
sapiens}
Length = 122
Score = 27.9 bits (61), Expect = 2.7
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 32 AAAIKAGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQAQN 74
+I G ++ E ++ M G NP K FEQ QN
Sbjct: 58 YTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQN 100
>2ix4_A 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ketoacyl-(acyl
carrier protein) synthase, lipid metabol condensing
enzyme; 1.95A {Arabidopsis thaliana} SCOP: c.95.1.1
c.95.1.1 PDB: 1w0i_A
Length = 431
Score = 28.7 bits (65), Expect = 3.0
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 177 VSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVD------PAIMGVGPAVAIPAAVKS 230
+ +G+G ++L + A R+G I + G D P G G +A+ A++
Sbjct: 248 IGEGSGVIVLEEYEHAKRRGAKIYAELCGYGMSG-DAHHITQPPEDGKGAVLAMTRALRQ 306
Query: 231 AGLQLDDID 239
+GL + ID
Sbjct: 307 SGLCPNQID 315
>4ewg_A Beta-ketoacyl synthase; ssgcid, structural genomics, seattle
structural genomics CEN infectious disease, transferase;
2.25A {Burkholderia phymatum}
Length = 412
Score = 28.2 bits (64), Expect = 4.2
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 18/77 (23%)
Query: 217 GVGPAVAIPAAVKSAGLQLDDID----------LFEINEAFASQFVYCRNKLGLDPEKIN 266
A A+ A++ A L + I ++ E+ A+ G E++
Sbjct: 278 ASTMARAMQLALEDAKLDANAIAYVNAHGTSTDRGDVAESQATART-----FG---ERMP 329
Query: 267 VNGGALAIGHPLGTTGA 283
++ +GH LG GA
Sbjct: 330 ISSLKSYVGHTLGACGA 346
>1ted_A PKS18; thiolase fold, substrate binding tunnel, transferase; HET:
MYR; 2.25A {Mycobacterium tuberculosis} SCOP: c.95.1.2
PDB: 1tee_A
Length = 393
Score = 27.7 bits (62), Expect = 5.4
Identities = 23/150 (15%), Positives = 46/150 (30%), Gaps = 39/150 (26%)
Query: 178 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPA------------IMGVGPAV--- 222
DG A+++ V + + V +F+ + + + +
Sbjct: 225 GDGCAALVIGASQVQEKLEPGKVVVRSSFSQLLDNTEDGIVLGVNHNGITCELSENLPGY 284
Query: 223 -------AIPAAVKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVN 268
+ + GLQ+ DIDL+ +I E LG+ E +
Sbjct: 285 IFSGVAPVVTEMLWDNGLQISDIDLWAIHPGGPKIIEQSV-------RSLGISAELAAQS 337
Query: 269 GGALAIGHPLGTTGARCVATLLHEMKRRGR 298
LA G + + +L M ++
Sbjct: 338 WDVLA-RF--GNMLSVSLIFVLETMVQQAE 364
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET:
ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6
c.55.1.6 PDB: 2d0p_A
Length = 610
Score = 28.0 bits (62), Expect = 5.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 219 GPAVAIPAAVKSAGLQLDDIDLFEINEA 246
G A+ + AG+ + DI L INEA
Sbjct: 49 GIQEALALVARGAGIAVSDISLIRINEA 76
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain,
copper-contain periplasmic, oxidoreductase; 1.70A
{Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Length = 638
Score = 27.6 bits (61), Expect = 6.4
Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 83 SENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDP--KTGDEKPVT 140
SE G+ R E+D V AA AG F + T ++D K G + T
Sbjct: 258 SEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFI-TLGDSKTPVLDGRKKDGKDSKFT 316
>1tqy_B Actinorhodin polyketide putative beta-ketoacyl SY;
alpha-beta-alpha-beta-alpha, heterodimer, transferase;
2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1
Length = 415
Score = 27.5 bits (62), Expect = 8.2
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 217 GVGPAVAIPAAVKSAGLQLDDID 239
G AI A+ AG +D+D
Sbjct: 278 PAGLERAIRLALNDAGTGPEDVD 300
>2qap_A Fructose-1,6-bisphosphate aldolase; beta barrel,
fructose-1,6-bisphosphate teminal tail, lyase; 1.59A
{Leishmania mexicana} SCOP: c.1.10.1 PDB: 2qdg_A*
2qdh_A* 1epx_A 1f2j_A
Length = 391
Score = 27.4 bits (61), Expect = 8.8
Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 6/70 (8%)
Query: 79 MGVTSENVAHRFGVTRKEQDQAAVD--SHRKAAAATAAGKFKDEIIPVATKIVDPKTG-- 134
MG + + H G+ + + V + A ++ E+I K+ P G
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMSRVTVLQSQLPAYNRLKTPYESELIATVKKLTTPGKGLL 60
Query: 135 --DEKPVTIS 142
DE + +
Sbjct: 61 AADESIGSCT 70
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.389
Gapped
Lambda K H
0.267 0.0839 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,405,451
Number of extensions: 351188
Number of successful extensions: 1080
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1012
Number of HSP's successfully gapped: 102
Length of query: 345
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 251
Effective length of database: 4,077,219
Effective search space: 1023381969
Effective search space used: 1023381969
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (25.9 bits)