RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 019188
(345 letters)
>d1m3ka2 c.95.1.1 (A:269-392) Biosynthetic thiolase {Zoogloea
ramigera [TaxId: 350]}
Length = 124
Score = 144 bits (364), Expect = 2e-43
Identities = 64/122 (52%), Positives = 81/122 (66%), Gaps = 2/122 (1%)
Query: 200 LGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLG 259
LG ++A VGVDP +MG GP A A++ AG ++ D+DL E NEAFA+Q LG
Sbjct: 4 LGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLG 63
Query: 260 LDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVF 319
DP +NVNGGA+AIGHP+G +GAR + TLL EMKRRG R G+ ++CIG GMG A
Sbjct: 64 WDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCI 121
Query: 320 ER 321
E
Sbjct: 122 ES 123
>d1afwa2 c.95.1.1 (A:294-417) Thiolase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 124
Score = 142 bits (360), Expect = 7e-43
Identities = 76/126 (60%), Positives = 97/126 (76%), Gaps = 4/126 (3%)
Query: 196 GLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCR 255
LP+LG + F VGV P IMGVGPA AIP +++ GLQ+ DID+FEINEAFA+Q +YC
Sbjct: 2 NLPVLGRYIDFQTVGVPPEIMGVGPAYAIPKVLEATGLQVQDIDIFEINEAFAAQALYCI 61
Query: 256 NKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGA 315
+KLG+D K+N GGA+A+GHPLG TGAR VAT+L E+K+ + GV+SMCIGTGMGA
Sbjct: 62 HKLGIDLNKVNPRGGAIALGHPLGCTGARQVATILRELKKD----QIGVVSMCIGTGMGA 117
Query: 316 AAVFER 321
AA+F +
Sbjct: 118 AAIFIK 123
>d1m3ka1 c.95.1.1 (A:1-268) Biosynthetic thiolase {Zoogloea ramigera
[TaxId: 350]}
Length = 268
Score = 144 bits (365), Expect = 7e-42
Identities = 78/206 (37%), Positives = 110/206 (53%), Gaps = 16/206 (7%)
Query: 1 MAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEG 60
AA AG P+ +N+ SGL+AVA I G I + G+ESM++ P
Sbjct: 69 QAAMKAGVPQEATAWGMNQLAGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHL 128
Query: 61 SVNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAA 110
K+ F+ + MG T+ENVA ++ ++R EQD AV S KA A
Sbjct: 129 RGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEA 188
Query: 111 ATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTT 170
A G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F K+GT T
Sbjct: 189 AQKDGRFKDEIVP---FIVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFDKEGTVT 242
Query: 171 AGNSSQVSDGAGAVLLMKRSVAMRKG 196
AGN+S ++DGA A LLM + A R+G
Sbjct: 243 AGNASGLNDGAAAALLMSEAEASRRG 268
>d1ulqa2 c.95.1.1 (A:276-400) Beta-ketoadipyl CoA thiolase {Thermus
thermophilus [TaxId: 274]}
Length = 125
Score = 127 bits (321), Expect = 4e-37
Identities = 58/124 (46%), Positives = 80/124 (64%), Gaps = 4/124 (3%)
Query: 200 LGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNK-- 257
L R A GV P IMG+GP A A++ AGL D+ L E+NEAFA+Q + +
Sbjct: 3 LARVRAIAVAGVPPRIMGIGPVPATRKALERAGLSFSDLGLIELNEAFAAQALAVLREWS 62
Query: 258 LGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAA 317
L ++ +++N NGGA+A+GHPLG +GAR + TL+HEM+RR +FG+ +MCIG G G A
Sbjct: 63 LSMEDQRLNPNGGAIALGHPLGASGARILTTLVHEMRRRK--VQFGLATMCIGVGQGIAV 120
Query: 318 VFER 321
V E
Sbjct: 121 VVEG 124
>d1ulqa1 c.95.1.1 (A:3-275) Beta-ketoadipyl CoA thiolase {Thermus
thermophilus [TaxId: 274]}
Length = 273
Score = 128 bits (323), Expect = 1e-35
Identities = 87/213 (40%), Positives = 118/213 (55%), Gaps = 22/213 (10%)
Query: 1 MAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEG 60
MA AGFP V TVNR C SGL+AVA A AI AG + IG+G+ESM+ P A
Sbjct: 67 MALLLAGFPVEVAGCTVNRLCGSGLEAVAQAARAIWAGEGKVYIGSGVESMSRAPYAVPK 126
Query: 61 SVNPK----------------VKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDS 104
V QA MG T+EN+A +G+ R+EQD+ A+ S
Sbjct: 127 PERGFPTGNLVMYDTTLGWRFVNPKMQALYGTESMGETAENLAEMYGIRREEQDRFALLS 186
Query: 105 HRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 164
H+KA A G+F+DE++PV P ++ + + D+G R +TS+ +LA L+PVF+
Sbjct: 187 HQKAVRAWEEGRFQDEVVPV------PVKRGKEEILVEQDEGPRRDTSLEKLAALRPVFR 240
Query: 165 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGL 197
+ GT TAGNSS ++DGA AVLL+ A GL
Sbjct: 241 EGGTVTAGNSSPLNDGAAAVLLVSDDYAKAHGL 273
>d1wdkc2 c.95.1.1 (C:264-391) Fatty oxidation complex beta subunit
(3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId:
296]}
Length = 128
Score = 122 bits (308), Expect = 4e-35
Identities = 66/129 (51%), Positives = 82/129 (63%), Gaps = 5/129 (3%)
Query: 196 GLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCR 255
GL L V R+ A GVDPAIMG GP A A+K AGL + DID E+NEAFA+Q +
Sbjct: 1 GLEPLAVIRSMAVAGVDPAIMGYGPVPATQKALKRAGLNMADIDFIELNEAFAAQALPVL 60
Query: 256 N---KLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTG 312
L EK+N++GGA+A+GHP G +GAR TLL+ MK+ G FG+ +MCIG G
Sbjct: 61 KDLKVLDKMNEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQNGG--TFGLSTMCIGLG 118
Query: 313 MGAAAVFER 321
G A VFER
Sbjct: 119 QGIATVFER 127
>d1afwa1 c.95.1.1 (A:25-293) Thiolase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 269
Score = 112 bits (280), Expect = 2e-29
Identities = 85/196 (43%), Positives = 117/196 (59%), Gaps = 13/196 (6%)
Query: 1 MAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMA--- 57
A +G P + P +NRQCSSGL AV D+A IK G DIG+ G+ESMT N
Sbjct: 81 AACLASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALGVESMTNNYKNVNP 140
Query: 58 WEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKF 117
+ +++ +A+ CL+PMG+T+ENVA F ++RK+QD+ A +S++KA A G F
Sbjct: 141 LGMISSEELQKNREAKKCLIPMGITNENVAANFKISRKDQDEFAANSYQKAYKAKNEGLF 200
Query: 118 KDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKD-GTTTAGNSSQ 176
+DEI+P+ D+G RPN + L+ ++P F KD GTTTAGN+SQ
Sbjct: 201 EDEILPI---------KLPDGSICQSDEGPRPNVTAESLSSIRPAFIKDRGTTTAGNASQ 251
Query: 177 VSDGAGAVLLMKRSVA 192
VSDG VLL +RSVA
Sbjct: 252 VSDGVAGVLLARRSVA 267
>d1wdkc1 c.95.1.1 (C:2-263) Fatty oxidation complex beta subunit
(3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId:
296]}
Length = 262
Score = 106 bits (265), Expect = 2e-27
Identities = 71/193 (36%), Positives = 99/193 (51%), Gaps = 8/193 (4%)
Query: 1 MAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEG 60
MA+ P T +TV+R C S + A+ A AI G D+ + G+E M M
Sbjct: 74 MASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHMGHVSMMH-- 131
Query: 61 SVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDE 120
V+P A MG+T+E + G++R++QD AV SH+ A AT GKFKDE
Sbjct: 132 GVDPNPHMSLYAAKASGMMGLTAEMLGKMHGISREQQDAFAVRSHQLAHKATVEGKFKDE 191
Query: 121 IIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK-KDGTTTAGNSSQVSD 179
IIP+ + D+ IRP+T++ LA LKP F K GT TAG SSQ++D
Sbjct: 192 IIPMQGYDENGF-----LKIFDYDETIRPDTTLESLAALKPAFNPKGGTVTAGTSSQITD 246
Query: 180 GAGAVLLMKRSVA 192
GA +++M A
Sbjct: 247 GASCMIVMSAQRA 259
>d1teda_ c.95.1.2 (A:) Polyketide synthase PKS18 {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 372
Score = 44.4 bits (104), Expect = 1e-05
Identities = 23/168 (13%), Positives = 51/168 (30%), Gaps = 28/168 (16%)
Query: 178 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPA------------IMGVGPAV--- 222
DG A+++ V + + V +F+ + + + +
Sbjct: 204 GDGCAALVIGASQVQEKLEPGKVVVRSSFSQLLDNTEDGIVLGVNHNGITCELSENLPGY 263
Query: 223 -------AIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIG 275
+ + GLQ+ DIDL+ I+ LG+ E + +
Sbjct: 264 IFSGVAPVVTEMLWDNGLQISDIDLWAIHPGGPKIIEQSVRSLGISAELAAQS---WDVL 320
Query: 276 HPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMG---AAAVFE 320
G + + +L M ++ + + G G +F+
Sbjct: 321 ARFGNMLSVSLIFVLETMVQQAESAKAISTGVAFAFGPGVTVEGMLFD 368
>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal
domain {Paracoccus denitrificans [TaxId: 266]}
Length = 459
Score = 38.6 bits (90), Expect = 8e-04
Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
Query: 83 SENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTIS 142
SE +T E D V + + A AAG ++ E+ V VD + T
Sbjct: 214 SEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ-ELNGVKV--VDGRKEASSLFTRY 270
Query: 143 VDDGIRPN 150
+ P+
Sbjct: 271 IPIANNPH 278
>d1u0ma2 c.95.1.2 (A:202-349) Putative polyketide synthase SCO1206
{Streptomyces coelicolor [TaxId: 1902]}
Length = 148
Score = 30.7 bits (69), Expect = 0.11
Identities = 15/102 (14%), Positives = 28/102 (27%), Gaps = 11/102 (10%)
Query: 224 IPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGA 283
+ G D+D + ++ L +DP L G
Sbjct: 49 LKELAGEHGWDASDLDFYIVHAGGPRILDDLSTFLEVDPHAFR------FSRATLTEYGN 102
Query: 284 RCVATLLHEMKRRGRDCRF--GVISMCIGTGMG---AAAVFE 320
A +L ++R + G + G G G ++
Sbjct: 103 IASAVVLDALRRLFDEGGVEEGARGLLAGFGPGITAEMSLGC 144
>d1bi5a2 c.95.1.2 (A:236-389) Chalcone synthase {Alfalfa (Medicago
sativa) [TaxId: 3879]}
Length = 154
Score = 29.5 bits (66), Expect = 0.28
Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 7/93 (7%)
Query: 227 AVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCV 286
A + G+ + + + + KL L PEK+N L+ G + CV
Sbjct: 51 AFEPLGISDYNSIFWIAHPGGPAILDQVEQKLALKPEKMNATREVLSEY---GNMSSACV 107
Query: 287 ATLLHEMKRR----GRDCRFGVISMCIGTGMGA 315
+L EM+++ G + + G G
Sbjct: 108 LFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGP 140
>d1t95a1 a.5.8.1 (A:87-161) Hypothetical protein AF0491, middle
domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 75
Score = 27.3 bits (61), Expect = 0.72
Identities = 13/57 (22%), Positives = 18/57 (31%), Gaps = 11/57 (19%)
Query: 116 KFKDEIIPVATKIVDPKTGDEKPVTI------SVDDGIRPNTSVSELA-----KLKP 161
K K I ++ +DP+T P + I SV LKP
Sbjct: 19 KRKQIINFISRNTIDPRTNAPHPPSRIERALEEAKVHIDIFKSVEAQVKDIVKALKP 75
>d2g0ta1 c.37.1.10 (A:1-338) Hypothetical protein TM0796 {Thermotoga
maritima [TaxId: 2336]}
Length = 338
Score = 28.6 bits (64), Expect = 1.2
Identities = 26/174 (14%), Positives = 45/174 (25%), Gaps = 37/174 (21%)
Query: 166 DGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVA-I 224
+S +R +P++ +G + I+GV +
Sbjct: 45 VAEHEGKMASDFVKP------------VRYDVPVVSSVEKAKEMGAEVLIIGVSNPGGYL 92
Query: 225 PAAVKS-------------AGLQLDDIDLFEINEAFASQFVYC----RNKLGLDPEKINV 267
+ + +GL E + L LD + +
Sbjct: 93 EEQIATLVKKALSLGMDVISGLHFKISQQTEFLKIAHENGTRIIDIRIPPLELDVLRGGI 152
Query: 268 NGGALAIGHPLGT---TGARCVATLLHE-MKRRGRDCRF---GVISMCIGTGMG 314
+ + GT G R A L E +G F G + IG G
Sbjct: 153 YRKKIKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATGQTGILIGADAG 206
>d1tqyb1 c.95.1.1 (B:2-209) Actinorhodin polyketide putative
beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor
[TaxId: 1902]}
Length = 208
Score = 27.7 bits (60), Expect = 1.6
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 20 QCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEG 60
+ + GL A+ I+ G + + G++S ++P W
Sbjct: 159 EQAGGLDALGHARRTIRRG-TPLVVSGGVDSA-LDPWGWVS 197
>d1tqya2 c.95.1.1 (A:219-423) Actinorhodin polyketide putative
beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor
[TaxId: 1902]}
Length = 205
Score = 27.9 bits (61), Expect = 1.6
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 178 SDGAGAVLLMKRSVAMRKGLPILGVFR 204
++GA +L A+ +G I
Sbjct: 20 AEGAAMFVLEDYDSALARGARIHAEIS 46
>d2d0oa2 c.55.1.6 (A:1-92,A:255-403) Diol dehydratase-reactivating
factor large subunit DdrA {Klebsiella oxytoca [TaxId:
571]}
Length = 241
Score = 27.1 bits (60), Expect = 2.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 223 AIPAAVKSAGLQLDDIDLFEINEA 246
A+ + AG+ + DI L INEA
Sbjct: 53 ALALVARGAGIAVSDISLIRINEA 76
>d2iw0a1 c.6.2.3 (A:29-248) Chitin deacetylase {Bean anthracnose
fungus (Colletotrichum lindemuthianum) [TaxId: 290576]}
Length = 220
Score = 26.8 bits (58), Expect = 3.6
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 7/46 (15%)
Query: 122 IPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDG 167
+PV T I+ V ++ DDG T +L + K++
Sbjct: 1 VPVGTPILQCTQ--PGLVALTYDDGPFTFT-----PQLLDILKQND 39
>d1ee0a2 c.95.1.2 (A:236-395) Pyrone synthase (PyS, chalcone
synthase 2) {Gerbera hybrid cultivar [TaxId: 18101]}
Length = 160
Score = 26.5 bits (58), Expect = 3.8
Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 7/66 (10%)
Query: 254 CRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRR----GRDCRFGVISMCI 309
KL L +K+ + L+ G + CV ++ E+++R G+ + +
Sbjct: 83 VERKLNLKEDKLRASRHVLSEY---GNLISACVLFIIDEVRKRSMAEGKSTTGEGLDCGV 139
Query: 310 GTGMGA 315
G G
Sbjct: 140 LFGFGP 145
>d1nbwa2 c.55.1.6 (A:2-91,A:257-405) ATPase domain of the glycerol
dehydratase reactivase alpha subunit {Klebsiella
pneumoniae [TaxId: 573]}
Length = 239
Score = 25.9 bits (57), Expect = 6.3
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 223 AIPAAVKSAGLQLDDIDLFEINEA 246
A+ A+ + D+ +NEA
Sbjct: 51 ALEQALAKTPWSMSDVSRIYLNEA 74
>d2ix4a1 c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II {Thale
cress (Arabidopsis thaliana), mitochondrial isoform
[TaxId: 3702]}
Length = 270
Score = 25.7 bits (55), Expect = 7.5
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 178 SDGAGAVLLMKRSVAMRKGLPI 199
+G+G ++L + A R+G I
Sbjct: 249 GEGSGVIVLEEYEHAKRRGAKI 270
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.389
Gapped
Lambda K H
0.267 0.0434 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,245,216
Number of extensions: 57767
Number of successful extensions: 219
Number of sequences better than 10.0: 1
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 28
Length of query: 345
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 259
Effective length of database: 1,226,816
Effective search space: 317745344
Effective search space used: 317745344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.9 bits)