Query 019191
Match_columns 345
No_of_seqs 147 out of 1331
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 07:26:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019191.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019191hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00817 tpt Tpt phosphate/ph 100.0 1.7E-36 3.7E-41 275.5 24.4 284 11-301 5-296 (302)
2 KOG1441 Glucose-6-phosphate/ph 100.0 1.3E-36 2.9E-41 269.8 18.2 297 5-305 11-314 (316)
3 PTZ00343 triose or hexose phos 100.0 4.2E-35 9.1E-40 270.3 28.9 285 8-299 49-349 (350)
4 PLN00411 nodulin MtN21 family 100.0 9.9E-31 2.1E-35 240.4 29.0 280 19-306 21-336 (358)
5 PRK11689 aromatic amino acid e 100.0 1.4E-27 3E-32 216.0 28.4 265 10-300 10-289 (295)
6 KOG1444 Nucleotide-sugar trans 100.0 5.3E-28 1.1E-32 210.1 22.8 294 9-306 10-308 (314)
7 PF08449 UAA: UAA transporter 100.0 9.9E-27 2.1E-31 211.2 28.2 273 28-303 17-302 (303)
8 PRK11453 O-acetylserine/cystei 100.0 1.4E-26 3E-31 210.0 27.5 263 28-301 21-290 (299)
9 PF06027 DUF914: Eukaryotic pr 100.0 1.1E-26 2.3E-31 209.3 25.9 275 22-305 24-312 (334)
10 PRK11272 putative DMT superfam 100.0 5.3E-26 1.1E-30 205.5 27.5 260 27-301 24-288 (292)
11 PRK15430 putative chlorampheni 100.0 1E-25 2.2E-30 204.0 27.3 260 28-305 25-292 (296)
12 KOG1443 Predicted integral mem 100.0 2.9E-26 6.3E-31 196.4 22.1 285 8-296 13-313 (349)
13 PRK10532 threonine and homoser 99.9 1.7E-25 3.8E-30 202.2 27.3 258 22-301 23-284 (293)
14 TIGR00950 2A78 Carboxylate/Ami 99.9 2.1E-25 4.5E-30 198.5 24.7 251 28-293 6-259 (260)
15 KOG1442 GDP-fucose transporter 99.9 6.1E-26 1.3E-30 191.3 7.9 285 21-308 38-337 (347)
16 COG5070 VRG4 Nucleotide-sugar 99.9 3E-23 6.5E-28 170.1 17.1 281 21-305 16-303 (309)
17 TIGR03340 phn_DUF6 phosphonate 99.9 2E-21 4.4E-26 174.7 21.3 211 79-295 67-280 (281)
18 TIGR00688 rarD rarD protein. T 99.9 3.3E-19 7.1E-24 158.3 24.9 228 27-273 18-255 (256)
19 COG0697 RhaT Permeases of the 99.9 1.8E-18 3.9E-23 156.0 29.9 256 28-299 24-288 (292)
20 COG2962 RarD Predicted permeas 99.8 1.9E-17 4E-22 142.7 26.9 283 1-305 1-290 (293)
21 KOG1581 UDP-galactose transpor 99.8 1.7E-17 3.7E-22 142.9 23.8 262 39-302 46-317 (327)
22 KOG2234 Predicted UDP-galactos 99.8 2.4E-17 5.2E-22 145.9 25.4 278 20-302 24-326 (345)
23 KOG1580 UDP-galactose transpor 99.8 1.1E-18 2.3E-23 144.6 12.9 258 41-300 50-315 (337)
24 COG5006 rhtA Threonine/homoser 99.8 6.7E-17 1.5E-21 135.6 21.9 250 29-299 30-283 (292)
25 PF04142 Nuc_sug_transp: Nucle 99.8 1.8E-17 3.9E-22 144.7 18.3 210 75-288 17-243 (244)
26 KOG3912 Predicted integral mem 99.8 5.2E-17 1.1E-21 138.0 19.7 271 27-298 19-334 (372)
27 TIGR00776 RhaT RhaT L-rhamnose 99.7 7.6E-16 1.7E-20 138.7 24.7 245 28-298 18-288 (290)
28 KOG4510 Permease of the drug/m 99.7 6.9E-19 1.5E-23 148.4 3.8 266 20-301 47-328 (346)
29 KOG2765 Predicted membrane pro 99.7 4.6E-17 1E-21 143.9 15.4 224 77-302 157-394 (416)
30 KOG1582 UDP-galactose transpor 99.7 8.3E-17 1.8E-21 136.1 14.1 270 28-300 60-334 (367)
31 KOG1583 UDP-N-acetylglucosamin 99.7 3.8E-17 8.1E-22 138.7 12.0 258 44-302 33-318 (330)
32 PF03151 TPT: Triose-phosphate 99.7 3E-16 6.6E-21 128.1 13.9 143 156-298 1-153 (153)
33 KOG2766 Predicted membrane pro 99.7 5.9E-17 1.3E-21 135.9 6.2 263 23-299 30-300 (336)
34 TIGR00803 nst UDP-galactose tr 99.2 2.9E-11 6.4E-16 104.9 9.1 189 100-296 3-222 (222)
35 COG2510 Predicted membrane pro 99.2 1.8E-10 3.9E-15 87.1 10.0 135 156-297 4-138 (140)
36 PF00892 EamA: EamA-like trans 99.2 6.6E-11 1.4E-15 92.7 7.4 113 27-145 7-124 (126)
37 PF00892 EamA: EamA-like trans 99.1 5.5E-10 1.2E-14 87.4 9.8 124 165-297 1-125 (126)
38 COG2510 Predicted membrane pro 99.1 3.6E-09 7.8E-14 80.1 11.3 116 27-147 19-139 (140)
39 PF13536 EmrE: Multidrug resis 99.0 1.4E-09 3E-14 83.9 8.1 102 49-151 2-110 (113)
40 KOG4314 Predicted carbohydrate 99.0 2.5E-09 5.4E-14 87.0 9.0 219 77-300 55-278 (290)
41 PF06800 Sugar_transport: Suga 98.9 2E-07 4.4E-12 81.5 19.2 204 78-295 48-268 (269)
42 PRK15430 putative chlorampheni 98.8 1.6E-07 3.5E-12 85.1 14.7 141 151-297 4-144 (296)
43 TIGR00688 rarD rarD protein. T 98.8 1.9E-07 4.2E-12 82.8 13.9 139 155-297 2-141 (256)
44 TIGR03340 phn_DUF6 phosphonate 98.7 3.7E-07 8E-12 82.1 13.3 133 157-298 3-135 (281)
45 TIGR00950 2A78 Carboxylate/Ami 98.6 2.3E-06 5E-11 75.9 15.6 118 22-142 139-259 (260)
46 PF05653 Mg_trans_NIPA: Magnes 98.5 5.3E-07 1.1E-11 81.3 9.1 216 78-300 52-294 (300)
47 PLN00411 nodulin MtN21 family 98.5 4.1E-06 8.9E-11 77.6 14.8 139 154-298 12-156 (358)
48 PRK02971 4-amino-4-deoxy-L-ara 98.4 1.1E-05 2.3E-10 63.3 12.3 120 155-299 2-123 (129)
49 PRK15051 4-amino-4-deoxy-L-ara 98.4 5.6E-06 1.2E-10 63.3 10.2 63 84-146 46-108 (111)
50 PRK10532 threonine and homoser 98.2 2.4E-05 5.2E-10 70.8 13.6 117 24-147 161-281 (293)
51 COG2962 RarD Predicted permeas 98.2 3.5E-05 7.6E-10 67.3 13.0 141 153-299 5-145 (293)
52 PTZ00343 triose or hexose phos 98.2 6.4E-05 1.4E-09 69.8 15.5 138 153-297 47-185 (350)
53 PRK11689 aromatic amino acid e 98.2 3.2E-05 6.8E-10 70.1 12.8 70 78-147 218-287 (295)
54 KOG2922 Uncharacterized conser 98.1 1.1E-05 2.4E-10 71.2 8.6 214 77-298 65-306 (335)
55 TIGR00817 tpt Tpt phosphate/ph 98.1 0.00012 2.6E-09 66.5 14.8 125 165-297 12-136 (302)
56 PRK11453 O-acetylserine/cystei 98.1 0.00014 3.1E-09 66.0 14.7 125 157-298 6-132 (299)
57 PF13536 EmrE: Multidrug resis 98.1 3.8E-05 8.2E-10 59.0 9.3 62 238-300 47-108 (113)
58 PRK11272 putative DMT superfam 98.0 0.00025 5.4E-09 64.1 15.2 129 158-298 11-141 (292)
59 PF03151 TPT: Triose-phosphate 98.0 0.00017 3.7E-09 58.4 12.5 120 26-146 15-152 (153)
60 PRK13499 rhamnose-proton sympo 97.9 0.0073 1.6E-07 55.3 23.2 219 79-298 77-341 (345)
61 TIGR00776 RhaT RhaT L-rhamnose 97.8 0.00029 6.3E-09 63.6 11.4 131 156-299 2-137 (290)
62 PF08449 UAA: UAA transporter 97.8 0.00054 1.2E-08 62.3 13.1 128 166-302 11-140 (303)
63 PF04657 DUF606: Protein of un 97.8 0.0013 2.9E-08 52.2 13.6 131 157-295 3-138 (138)
64 PRK10452 multidrug efflux syst 97.7 0.00017 3.7E-09 55.5 7.8 72 77-148 32-104 (120)
65 PRK15051 4-amino-4-deoxy-L-ara 97.7 0.00022 4.8E-09 54.4 8.1 56 242-297 53-108 (111)
66 COG0697 RhaT Permeases of the 97.6 0.0024 5.2E-08 57.2 15.0 140 154-301 6-146 (292)
67 PRK02971 4-amino-4-deoxy-L-ara 97.6 0.00019 4.1E-09 56.3 6.6 72 78-149 50-124 (129)
68 PF06027 DUF914: Eukaryotic pr 97.6 0.0011 2.5E-08 60.5 12.4 74 228-301 81-154 (334)
69 PRK09541 emrE multidrug efflux 97.5 0.00047 1E-08 52.4 7.2 69 80-148 35-104 (110)
70 PRK11431 multidrug efflux syst 97.5 0.00069 1.5E-08 50.9 7.6 69 78-146 32-101 (105)
71 PRK10650 multidrug efflux syst 97.4 0.0013 2.8E-08 49.7 8.8 67 79-145 39-106 (109)
72 COG4975 GlcU Putative glucose 97.3 4.1E-05 9E-10 65.0 -0.3 204 80-297 64-284 (288)
73 COG2076 EmrE Membrane transpor 97.3 0.00083 1.8E-08 50.1 6.5 70 78-147 33-103 (106)
74 PF04142 Nuc_sug_transp: Nucle 97.2 0.0013 2.8E-08 57.8 7.4 76 227-302 18-93 (244)
75 PRK10452 multidrug efflux syst 97.1 0.0021 4.6E-08 49.5 7.0 55 245-299 49-104 (120)
76 PF00893 Multi_Drug_Res: Small 97.1 0.0029 6.4E-08 46.6 7.2 57 82-138 36-93 (93)
77 PRK13499 rhamnose-proton sympo 96.9 0.01 2.2E-07 54.4 10.5 141 154-301 6-156 (345)
78 KOG4510 Permease of the drug/m 96.8 0.00039 8.5E-09 60.0 0.3 70 230-299 101-170 (346)
79 PRK09541 emrE multidrug efflux 96.8 0.0076 1.6E-07 45.8 7.3 55 245-299 49-104 (110)
80 COG3238 Uncharacterized protei 96.8 0.061 1.3E-06 42.9 12.6 137 154-297 4-145 (150)
81 COG2076 EmrE Membrane transpor 96.6 0.014 3.1E-07 43.5 7.8 55 245-299 49-104 (106)
82 PF06800 Sugar_transport: Suga 96.6 0.047 1E-06 48.2 12.3 66 78-143 198-267 (269)
83 COG5006 rhtA Threonine/homoser 96.6 0.048 1E-06 47.1 11.6 57 87-143 222-278 (292)
84 PRK10650 multidrug efflux syst 96.6 0.06 1.3E-06 40.8 11.0 53 245-297 54-107 (109)
85 PF07857 DUF1632: CEO family ( 96.5 0.0064 1.4E-07 53.2 6.1 132 156-303 1-139 (254)
86 PRK11431 multidrug efflux syst 96.4 0.029 6.2E-07 42.2 8.3 54 245-298 48-102 (105)
87 PF05653 Mg_trans_NIPA: Magnes 96.4 0.0071 1.5E-07 54.7 5.9 118 153-298 5-122 (300)
88 TIGR00803 nst UDP-galactose tr 96.3 0.1 2.3E-06 45.0 12.7 66 79-144 156-221 (222)
89 KOG2234 Predicted UDP-galactos 96.2 0.15 3.3E-06 46.3 13.1 139 159-297 19-163 (345)
90 PF10639 UPF0546: Uncharacteri 95.7 0.031 6.8E-07 42.4 5.6 69 76-145 43-112 (113)
91 COG4975 GlcU Putative glucose 95.6 0.0075 1.6E-07 51.6 2.2 132 156-301 3-139 (288)
92 PF04657 DUF606: Protein of un 95.3 0.72 1.6E-05 36.6 12.6 113 27-144 17-138 (138)
93 PF00893 Multi_Drug_Res: Small 95.0 0.087 1.9E-06 38.7 5.9 45 245-289 48-93 (93)
94 KOG1581 UDP-galactose transpor 94.8 0.49 1.1E-05 42.1 11.0 114 28-144 189-310 (327)
95 KOG1580 UDP-galactose transpor 94.6 0.034 7.3E-07 47.4 3.2 70 75-144 241-310 (337)
96 KOG1441 Glucose-6-phosphate/ph 94.5 0.074 1.6E-06 48.2 5.5 122 24-146 176-306 (316)
97 KOG2765 Predicted membrane pro 93.8 0.057 1.2E-06 49.2 3.3 73 229-301 162-234 (416)
98 KOG1444 Nucleotide-sugar trans 92.7 5 0.00011 36.2 13.5 135 156-297 13-148 (314)
99 PF10639 UPF0546: Uncharacteri 92.4 0.36 7.8E-06 36.7 5.2 53 243-295 58-111 (113)
100 KOG4314 Predicted carbohydrate 91.5 0.13 2.7E-06 42.7 2.1 64 238-301 65-128 (290)
101 KOG2922 Uncharacterized conser 91.4 0.057 1.2E-06 48.3 -0.0 124 152-303 18-141 (335)
102 COG5070 VRG4 Nucleotide-sugar 89.4 2.4 5.3E-05 36.1 7.9 119 19-140 163-289 (309)
103 COG3238 Uncharacterized protei 89.0 10 0.00022 30.5 10.8 122 19-145 13-144 (150)
104 PF06379 RhaT: L-rhamnose-prot 87.8 13 0.00027 34.1 11.9 141 154-302 6-157 (344)
105 PRK02237 hypothetical protein; 83.6 6.8 0.00015 29.3 6.7 48 252-299 59-106 (109)
106 KOG3912 Predicted integral mem 82.8 12 0.00026 33.2 9.0 67 232-298 92-158 (372)
107 PF05297 Herpes_LMP1: Herpesvi 79.9 0.56 1.2E-05 41.1 0.0 94 99-193 47-144 (381)
108 PF02694 UPF0060: Uncharacteri 78.9 8.5 0.00018 28.7 5.9 50 250-299 55-104 (107)
109 KOG2766 Predicted membrane pro 70.1 0.96 2.1E-05 39.4 -1.1 71 232-302 84-154 (336)
110 KOG1442 GDP-fucose transporter 68.3 4.1 8.9E-05 36.0 2.4 55 243-297 119-173 (347)
111 PF04342 DUF486: Protein of un 64.7 5.9 0.00013 29.5 2.3 29 267-295 77-105 (108)
112 PRK02237 hypothetical protein; 64.5 40 0.00086 25.3 6.6 39 110-148 68-106 (109)
113 PF07168 Ureide_permease: Urei 64.3 5.2 0.00011 35.8 2.3 72 226-298 72-146 (336)
114 PF08507 COPI_assoc: COPI asso 58.9 86 0.0019 24.6 9.4 34 263-297 71-104 (136)
115 PF02694 UPF0060: Uncharacteri 58.8 11 0.00023 28.2 2.7 39 110-148 66-104 (107)
116 PF06379 RhaT: L-rhamnose-prot 57.7 1.6E+02 0.0034 27.2 23.0 215 81-297 79-339 (344)
117 PRK13108 prolipoprotein diacyl 55.2 79 0.0017 30.6 8.7 24 278-301 254-277 (460)
118 PF01102 Glycophorin_A: Glycop 51.8 14 0.0003 28.6 2.5 7 320-326 107-113 (122)
119 COG3086 RseC Positive regulato 51.4 42 0.00092 26.6 5.1 27 247-273 69-95 (150)
120 PF06570 DUF1129: Protein of u 45.4 1.9E+02 0.0041 24.5 11.0 13 116-128 190-202 (206)
121 PF04342 DUF486: Protein of un 45.2 1.3E+02 0.0028 22.6 7.9 61 85-145 45-106 (108)
122 KOG4831 Unnamed protein [Funct 44.6 35 0.00076 25.5 3.5 58 88-145 65-123 (125)
123 PF04246 RseC_MucC: Positive r 43.6 38 0.00082 26.5 3.9 46 248-294 63-108 (135)
124 COG3169 Uncharacterized protei 41.3 43 0.00094 24.6 3.5 41 256-296 69-113 (116)
125 PRK14397 membrane protein; Pro 40.8 2.1E+02 0.0047 24.6 8.2 15 328-342 204-218 (222)
126 KOG4812 Golgi-associated prote 37.5 94 0.002 27.0 5.5 70 228-297 162-238 (262)
127 KOG4831 Unnamed protein [Funct 36.1 59 0.0013 24.3 3.5 51 245-295 71-122 (125)
128 PRK10862 SoxR reducing system 35.7 84 0.0018 25.4 4.8 24 249-272 71-94 (154)
129 KOG1582 UDP-galactose transpor 35.2 1.3E+02 0.0027 26.9 6.0 55 98-152 283-337 (367)
130 TIGR02840 spore_YtaF putative 34.7 86 0.0019 26.7 5.0 46 250-295 31-78 (206)
131 COG1742 Uncharacterized conser 34.7 2E+02 0.0042 21.6 10.1 40 110-149 67-106 (109)
132 PF05977 MFS_3: Transmembrane 33.8 4.8E+02 0.01 25.8 19.6 27 247-273 341-367 (524)
133 COG1742 Uncharacterized conser 33.4 28 0.0006 25.9 1.5 46 254-299 60-105 (109)
134 PF15048 OSTbeta: Organic solu 33.4 36 0.00079 26.2 2.2 27 271-297 25-55 (125)
135 COG1971 Predicted membrane pro 31.8 56 0.0012 27.3 3.2 44 252-295 40-84 (190)
136 PF11446 DUF2897: Protein of u 29.0 93 0.002 20.3 3.3 22 284-305 6-27 (55)
137 KOG1623 Multitransmembrane pro 28.6 1.5E+02 0.0032 26.0 5.4 30 268-297 176-205 (243)
138 TIGR02865 spore_II_E stage II 28.1 7.1E+02 0.015 26.0 13.2 44 102-145 11-54 (764)
139 PF05961 Chordopox_A13L: Chord 27.3 63 0.0014 21.9 2.3 21 282-302 6-26 (68)
140 PRK12437 prolipoprotein diacyl 27.2 3.3E+02 0.0072 24.2 7.7 22 278-299 235-256 (269)
141 COG5336 Uncharacterized protei 26.4 2.3E+02 0.005 21.4 5.3 35 264-298 57-92 (116)
142 KOG1583 UDP-N-acetylglucosamin 26.0 46 0.001 29.7 1.9 67 237-303 75-142 (330)
143 KOG1443 Predicted integral mem 25.9 1.9E+02 0.0041 26.4 5.6 56 243-298 101-156 (349)
144 PF10101 DUF2339: Predicted me 25.7 7.5E+02 0.016 25.4 12.2 160 128-305 4-163 (745)
145 PF03631 Virul_fac_BrkB: Virul 25.3 4.5E+02 0.0098 22.8 10.4 49 46-94 160-210 (260)
146 PRK09776 putative diguanylate 23.1 9.6E+02 0.021 25.8 12.4 21 156-176 71-91 (1092)
147 PF06123 CreD: Inner membrane 21.8 5.3E+02 0.012 24.8 8.2 59 121-181 317-377 (430)
148 PRK10666 ammonium transporter; 21.4 7.3E+02 0.016 23.8 16.6 52 122-175 273-325 (428)
149 COG3169 Uncharacterized protei 21.4 3.5E+02 0.0075 20.0 8.4 32 114-145 82-113 (116)
150 KOG1608 Protein transporter of 20.8 3.4E+02 0.0075 24.5 6.2 19 325-343 352-370 (374)
151 KOG2822 Sphingoid base-phospha 20.8 2.4E+02 0.0051 26.4 5.4 53 95-149 154-207 (407)
152 PRK00052 prolipoprotein diacyl 20.5 6E+02 0.013 22.5 8.4 22 278-299 237-258 (269)
153 PF15102 TMEM154: TMEM154 prot 20.5 49 0.0011 26.3 0.9 23 283-305 66-88 (146)
154 KOG3817 Uncharacterized conser 20.4 4.2E+02 0.009 24.7 6.8 75 28-107 206-283 (452)
155 PF11044 TMEMspv1-c74-12: Plec 20.2 60 0.0013 19.9 1.0 17 278-294 2-18 (49)
No 1
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=100.00 E-value=1.7e-36 Score=275.48 Aligned_cols=284 Identities=20% Similarity=0.210 Sum_probs=229.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhHHHHHHHHHHHHHHHHHHhcCCCC---CCCCchhHHHHHHHHHHH
Q 019191 11 SDVGAWAMNVISSVGIIMANKQLMSSSGYAFSFATTLTGFHFAVTALVGLVSNATGLSA---SKHVPLWELLWFSIVANM 87 (345)
Q Consensus 11 ~~~~~~~~~~~~s~~~~~~~K~~l~~~~~~~~~P~~l~~~r~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 87 (345)
..++.|+ .+|+++++.||+++++ +++|..+++.|+.++.+.+.+.++.+.++ .++.+++++++.|++++.
T Consensus 5 ~~~~~w~---~~~~~~~~~NK~~l~~----~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 77 (302)
T TIGR00817 5 LLFGLWY---FLNVYFNIYNKKLLNV----FPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTI 77 (302)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHhh----CChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 4455665 8999999999999998 89999999999999988776664322222 233456778899999988
Q ss_pred HHhhhhhhhcccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhhhhhcceeeeeccccccchhHHHHHHHHHHH
Q 019191 88 SIAGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITDVKVNAKGFLCACVAVLST 167 (345)
Q Consensus 88 ~~~~~~~al~~~~~s~~~~l~~~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~ 167 (345)
...+.|.+++|+++++++++++++|+++++++++++|||+++.++.+++++++|+++...++.+.+..|+++++++++++
T Consensus 78 ~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~ 157 (302)
T TIGR00817 78 GHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLSAMISNITF 157 (302)
T ss_pred HHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999877666677788999999999999
Q ss_pred HHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhhccCCc-ccccc--ccCc-hhHHHHHHHHH-HHHHHHHH
Q 019191 168 SLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGK-FITTY--KMTS-GAILFIFLSCA-LAVFCNVS 242 (345)
Q Consensus 168 a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~-~~~~~--~~~~-~~~~~~~~~~~-~~~~~~~~ 242 (345)
|+|+++.||..++.+.++.+.+.|++..+.+.+++.....|...... ..... .+.. ..+...+..++ +....+..
T Consensus 158 a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (302)
T TIGR00817 158 VSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQV 237 (302)
T ss_pred HHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999987655678999999999999988888776554321100 00000 0111 11222323333 34445566
Q ss_pred HHHhhcccCchhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhhhhhh
Q 019191 243 QYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAVE 301 (345)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~~~~~ 301 (345)
.+..++++||++++++.+++|++++++|++++||++|+.+++|.++++.|+.+|++.|.
T Consensus 238 ~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~ 296 (302)
T TIGR00817 238 AFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKA 296 (302)
T ss_pred HHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhc
Confidence 67899999999999999999999999999999999999999999999999999986543
No 2
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-36 Score=269.78 Aligned_cols=297 Identities=33% Similarity=0.456 Sum_probs=259.2
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhHHHHHHHHHHHHHHHHHHhcCCCCCCC----CchhHHHH
Q 019191 5 KKSSVVSDVGAWAMNVISSVGIIMANKQLMSSSGYAFSFATTLTGFHFAVTALVGLVSNATGLSASKH----VPLWELLW 80 (345)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~s~~~~~~~K~~l~~~~~~~~~P~~l~~~r~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~ 80 (345)
..+........|..|++++++..+.||+++.+ ++|++|.+++..+++.+.+.....+..+..++++ .+++.+++
T Consensus 11 ~~~~~~~~~~~~~~w~~~~v~~~~~nK~il~~--~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llp 88 (316)
T KOG1441|consen 11 QLKKILRIGIAFAIWYVLSVGVIILNKYILSK--YGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLP 88 (316)
T ss_pred ccchhHHHHHHHHHHhhhheeeEEeeHhhhcc--CCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHH
Confidence 34566777777888889999999999999997 8899999999999999888888887766655444 56888999
Q ss_pred HHHHHHHHHhhhhhhhcccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhhhhhcceeeeeccccccchhHHHH
Q 019191 81 FSIVANMSIAGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITDVKVNAKGFLCA 160 (345)
Q Consensus 81 ~~~~~~~~~~~~~~al~~~~~s~~~~l~~~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~G~~~~ 160 (345)
+|+.++.+..+.|.|+.|+++|++|++++++|++++++++++.+|++++..+++++....|+++++..|.++|+.|++.+
T Consensus 89 l~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~a 168 (316)
T KOG1441|consen 89 LGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGFISA 168 (316)
T ss_pred HHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHh--hhcCCCHHHHHHhhhHHHHHHHH-HHHHHhhhccCCccccccccCchhHHHHHHHHHHHH
Q 019191 161 CVAVLSTSLQQITIGSLQ--KKYSIGSFELLSKTAPIQAVSLL-VLGPFVDYYLNGKFITTYKMTSGAILFIFLSCALAV 237 (345)
Q Consensus 161 l~a~~~~a~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~v~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (345)
+++.+..++++++.|+++ |+++.++.+++.|+++++.+.++ |.....|.... .......|+...+..+..+ ++++
T Consensus 169 ~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s-v~~f 246 (316)
T KOG1441|consen 169 MISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKF-VGFLTAPWFVTFLILLLNS-VLAF 246 (316)
T ss_pred HHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccce-eeeeccccchhhHHHHHHH-HHHH
Confidence 999999999999999988 46789999999999999999888 43333322111 0112234544444455555 9999
Q ss_pred HHHHHHHHhhcccCchhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhhhhhhHHHh
Q 019191 238 FCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAVEAEKQ 305 (345)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~~~~~~~~~ 305 (345)
+.|...|.+++++||++.++.+.+|.++.++.|+++|+++.|+.+..|.++.+.|+.+|++.+.++++
T Consensus 247 ~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~ 314 (316)
T KOG1441|consen 247 LLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKK 314 (316)
T ss_pred HHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999988776654
No 3
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=100.00 E-value=4.2e-35 Score=270.31 Aligned_cols=285 Identities=19% Similarity=0.258 Sum_probs=235.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhHHHHHHHHHHHHHHHHHHhcCCCCCC-----CCchhHHHHHH
Q 019191 8 SVVSDVGAWAMNVISSVGIIMANKQLMSSSGYAFSFATTLTGFHFAVTALVGLVSNATGLSASK-----HVPLWELLWFS 82 (345)
Q Consensus 8 ~~~~~~~~~~~~~~~s~~~~~~~K~~l~~~~~~~~~P~~l~~~r~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~ 82 (345)
+....++.|+ .+|+..++.||+++++ +|+|++++.+|++++.+++.+++..+.++++ +.+++++++.|
T Consensus 49 ~~~~~~~~wy---~~s~~~~~~nK~vl~~----~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~g 121 (350)
T PTZ00343 49 KLALLFLTWY---ALNVLYVVDNKLALNM----LPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQG 121 (350)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHh----CChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHH
Confidence 3455566666 7888889999999999 9999999999999998776655543322222 22456789999
Q ss_pred HHHHHHHhhhhhhhcccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhhhhhcceeeeeccccccchhHHHHHH
Q 019191 83 IVANMSIAGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITDVKVNAKGFLCACV 162 (345)
Q Consensus 83 ~~~~~~~~~~~~al~~~~~s~~~~l~~~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~G~~~~l~ 162 (345)
+++.......+.|++++++++++++++++|+++++++++++|||++++++.+++++++|+.++..++.++++.|++++++
T Consensus 122 l~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~~l~ 201 (350)
T PTZ00343 122 LCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAML 201 (350)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHHHHH
Confidence 99888777788999999999999999999999999999999999999999999999999999988888888899999999
Q ss_pred HHHHHHHHHHHHHHHhhhc-----CCCHHHHHHhhhHHHHHHHHHHHHHhhhccCCccc----ccc-ccC-chhHHHHHH
Q 019191 163 AVLSTSLQQITIGSLQKKY-----SIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFI----TTY-KMT-SGAILFIFL 231 (345)
Q Consensus 163 a~~~~a~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~----~~~-~~~-~~~~~~~~~ 231 (345)
|++++|+|+++.|+..+++ +.++.+...+..+.+.+.+++..+..|........ ... .+. ...+..++.
T Consensus 202 s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 281 (350)
T PTZ00343 202 SNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFKIFF 281 (350)
T ss_pred HHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHHHHH
Confidence 9999999999999988654 35677777777888888888887766532100000 000 111 123345666
Q ss_pred HHHHHHHHHHHHHHhhcccCchhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhhhh
Q 019191 232 SCALAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWA 299 (345)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~~~ 299 (345)
++++.++.|...+.++++++|.++++.++++|+++++.|++++||++|+.+++|.++++.|+++|++.
T Consensus 282 s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 282 SGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF 349 (350)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence 77888888988899999999999999999999999999999999999999999999999999999865
No 4
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=100.00 E-value=9.9e-31 Score=240.35 Aligned_cols=280 Identities=13% Similarity=0.148 Sum_probs=206.4
Q ss_pred HHHHHHHHHHHHHHhhccCCcccchhhHHHHHHHHHHHHHHHHHHh--cCCCCCCCCchhH---HHHHHHHHHHHHhhhh
Q 019191 19 NVISSVGIIMANKQLMSSSGYAFSFATTLTGFHFAVTALVGLVSNA--TGLSASKHVPLWE---LLWFSIVANMSIAGMN 93 (345)
Q Consensus 19 ~~~~s~~~~~~~K~~l~~~~~~~~~P~~l~~~r~~~~~~~l~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 93 (345)
-..++.++..+.|..++. |++ |..+.++|+.++++++..+.+ ++.++.++.++++ +...+++......+.+
T Consensus 21 ~q~~~~~~~~~~k~a~~~---G~~-~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~~~~~~~~ 96 (358)
T PLN00411 21 TETSVVGISTLFKVATSK---GLN-IYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGSMYVITGY 96 (358)
T ss_pred HHHHHHHHHHHHHHHHHC---CCC-ccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778889999999976 899 999999999999877765432 2212223334444 4444554434555788
Q ss_pred hhhcccchhHHHHHhhhhHHHHHHHHHHH------hccccChhhhhhhhhhhhcceeeeec-cc----------------
Q 019191 94 FSLMLNSVGFYQISKLSMIPVVCVMEWIL------HNKHYSKEVKMAVVVVVIGVGVCTIT-DV---------------- 150 (345)
Q Consensus 94 ~al~~~~~s~~~~l~~~~p~~~~~l~~l~------~~e~~~~~~~~~~~l~~~Gv~l~~~~-~~---------------- 150 (345)
.+++|++++.++++.+++|++++++++++ +|||+++.++.|++++++|+.++... +.
T Consensus 97 ~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~ 176 (358)
T PLN00411 97 IGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQL 176 (358)
T ss_pred HHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccccccccccccc
Confidence 89999999999999999999999999999 69999999999999999999875431 10
Q ss_pred -------ccc-chhHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhhccCCccccccccC
Q 019191 151 -------KVN-AKGFLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMT 222 (345)
Q Consensus 151 -------~~~-~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~ 222 (345)
..+ ..|+.+.++++++||+|++++|+..++++ +......+++..+.+...+.....+......+. ..++
T Consensus 177 ~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~ 253 (358)
T PLN00411 177 SPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYP-AAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWI--IHFD 253 (358)
T ss_pred ccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-cHhHHHHHHHHHHHHHHHHHHHHHccCCcccce--eccc
Confidence 112 34999999999999999999999877542 333455566655555555544444321000111 1233
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcccCchhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhhhhhhH
Q 019191 223 SGAILFIFLSCALAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAVEA 302 (345)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~~~~~~ 302 (345)
...+ .+++.++...+.+..+++++++.+|.+++++.+++|++++++|++++||++++.+++|+++++.|+.+.++.+++
T Consensus 254 ~~~~-~i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~ 332 (358)
T PLN00411 254 ITLI-TIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKAN 332 (358)
T ss_pred hHHH-HHHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3322 344444445556667778999999999999999999999999999999999999999999999999998876655
Q ss_pred HHhh
Q 019191 303 EKQR 306 (345)
Q Consensus 303 ~~~~ 306 (345)
|.++
T Consensus 333 ~~~~ 336 (358)
T PLN00411 333 EEKD 336 (358)
T ss_pred hhhh
Confidence 5443
No 5
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.96 E-value=1.4e-27 Score=216.02 Aligned_cols=265 Identities=13% Similarity=0.088 Sum_probs=193.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHH
Q 019191 10 VSDVGAWAMNVISSVGIIMANKQLMSSSGYAFSFATTLTGFHFAVTALVGLVSNATGLSASKHVPLWELLWFSIVANMSI 89 (345)
Q Consensus 10 ~~~~~~~~~~~~~s~~~~~~~K~~l~~~~~~~~~P~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (345)
...+..|..++ ...|..+++ +| |..+.+.|+.++.+++..+.+ .++.++.+++.....++.+....
T Consensus 10 l~a~~~Wg~~~-------~~~k~~~~~----~~-P~~~~~~R~~~a~l~l~~~~~--~~~~~~~~~~~~~~~~l~~~~~~ 75 (295)
T PRK11689 10 LIAILLWSTMV-------GLIRGVSES----LG-PVGGAAMIYSVSGLLLLLTVG--FPRLRQFPKRYLLAGGLLFVSYE 75 (295)
T ss_pred HHHHHHHHHHH-------HHHHHHHcc----CC-hHHHHHHHHHHHHHHHHHHcc--ccccccccHHHHHHHhHHHHHHH
Confidence 44455566433 669999998 99 999999999999887765532 12222333444444444455566
Q ss_pred hhhhhhhc----ccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhhhhhcceeeeeccc-----------cccc
Q 019191 90 AGMNFSLM----LNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITDV-----------KVNA 154 (345)
Q Consensus 90 ~~~~~al~----~~~~s~~~~l~~~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~-----------~~~~ 154 (345)
.+.+.+++ +.+++.++++.++.|+++.+++++++|||+++.++.+++++++|++++..++. +.+.
T Consensus 76 ~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~ 155 (295)
T PRK11689 76 ICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNP 155 (295)
T ss_pred HHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccCh
Confidence 66666664 46788889999999999999999999999999999999999999988765432 1234
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhhccCCccccccccCchhHHHHHHHHH
Q 019191 155 KGFLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCA 234 (345)
Q Consensus 155 ~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (345)
.|++++++++++||.|+++.||..++ .++..... ..+.+.+.+.... ++ ... ..++...+..+.+.++
T Consensus 156 ~G~~~~l~aa~~~A~~~v~~k~~~~~--~~~~~~~~---~~~~~~l~~~~~~-~~----~~~--~~~~~~~~~~l~~~~~ 223 (295)
T PRK11689 156 LSYGLAFIGAFIWAAYCNVTRKYARG--KNGITLFF---ILTALALWIKYFL-SP----QPA--MVFSLPAIIKLLLAAA 223 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCC--CCchhHHH---HHHHHHHHHHHHH-hc----Ccc--ccCCHHHHHHHHHHHH
Confidence 69999999999999999999997653 45544322 1222222222222 11 111 1223333444445556
Q ss_pred HHHHHHHHHHHhhcccCchhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhhhhh
Q 019191 235 LAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAV 300 (345)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~~~~ 300 (345)
.+...+..+++++++.++..++.+.+++|+++++++++++||++++.+++|.++++.|+.+..+.+
T Consensus 224 ~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~ 289 (295)
T PRK11689 224 AMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLAT 289 (295)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhH
Confidence 666677778899999999999999999999999999999999999999999999999998876543
No 6
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5.3e-28 Score=210.13 Aligned_cols=294 Identities=22% Similarity=0.275 Sum_probs=249.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCc---hhHHHHHHHHH
Q 019191 9 VVSDVGAWAMNVISSVGIIMANKQLMSSSGYAFSFATTLTGFHFAVTALVGLVSNATGLSASKHVP---LWELLWFSIVA 85 (345)
Q Consensus 9 ~~~~~~~~~~~~~~s~~~~~~~K~~l~~~~~~~~~P~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~ 85 (345)
.......-.++..+|+.|++.||++++. ++||--+++...|.+.+.+.+....+.|..+.++.+ .|+|+|.++++
T Consensus 10 ~~~~l~sa~~Y~~sS~lm~vvNK~vls~--y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf 87 (314)
T KOG1444|consen 10 QSSPLLSALFYCLSSILMTVVNKIVLSS--YNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLF 87 (314)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHH
Confidence 3333444445568999999999999999 555544444559999999999999888776666555 47899999999
Q ss_pred HHHHhhhhhhhcccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhhhhhcceeeeeccccccchhHHHHHHHHH
Q 019191 86 NMSIAGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITDVKVNAKGFLCACVAVL 165 (345)
Q Consensus 86 ~~~~~~~~~al~~~~~s~~~~l~~~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~ 165 (345)
.+.......+++|++++.+++++..+|+++++.+.+++|.|+++..|.++....+|......+|.+++..|+.|++...+
T Consensus 88 ~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~~~gY~w~~~n~~ 167 (314)
T KOG1444|consen 88 VGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFNLRGYSWALANCL 167 (314)
T ss_pred HHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceecchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhhccCCcccccc-cc-CchhHHHHHHHHHHHHHHHHHH
Q 019191 166 STSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTY-KM-TSGAILFIFLSCALAVFCNVSQ 243 (345)
Q Consensus 166 ~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~ 243 (345)
+.+.+.+..|+..+..+.+.+.+++|..+.+...+.+...+.+++. +..... .| ....+..+.++|++++..+++.
T Consensus 168 ~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~--~l~~~~~~~~~~~~~~~~~lScv~gf~isy~s 245 (314)
T KOG1444|consen 168 TTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELD--ALSLNFDNWSDSSVLVVMLLSCVMGFGISYTS 245 (314)
T ss_pred HHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchH--HHHhhcccccchhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988877888999999999988888887777766543 111111 12 2456778999999999999999
Q ss_pred HHhhcccCchhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhhhhhhHHHhh
Q 019191 244 YLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAVEAEKQR 306 (345)
Q Consensus 244 ~~~~~~~~~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~~~~~~~~~~ 306 (345)
+++.+..|+++.++++......+.+...+++|+++++..++|..+.+.|..+|++.+.++++.
T Consensus 246 ~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~~ 308 (314)
T KOG1444|consen 246 FLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKKQ 308 (314)
T ss_pred HHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhccC
Confidence 999999999999999966666666677777788999999999999999999999987665443
No 7
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.96 E-value=9.9e-27 Score=211.19 Aligned_cols=273 Identities=21% Similarity=0.299 Sum_probs=228.3
Q ss_pred HHHHHhhccCCcccchhhHHHHHHHHHHHHHHHHHHhcCC-CCCCCCchhHHHHHHHHHHHHHhhhhhhhcccchhHHHH
Q 019191 28 MANKQLMSSSGYAFSFATTLTGFHFAVTALVGLVSNATGL-SASKHVPLWELLWFSIVANMSIAGMNFSLMLNSVGFYQI 106 (345)
Q Consensus 28 ~~~K~~l~~~~~~~~~P~~l~~~r~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~s~~~~ 106 (345)
+..+.+.+++ ++.++|.++++.|++...+.......... .++++.+++++.+.++++.++..+.|.|++|+|.++..+
T Consensus 17 ~~qE~i~~~~-~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~ 95 (303)
T PF08449_consen 17 ILQEKIMTTP-YGSPFPLFLTFVQFAFNALFSFILLSLFKFPKSRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQIV 95 (303)
T ss_pred HHHHHHHcCC-CCCcccHHHHHHHHHHHHHHHHHHHHhccccCCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHH
Confidence 4455555552 33357999999999999887776654333 556777889999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHhccccChhhhhhhhhhhhcceeeeecccc----c------cchhHHHHHHHHHHHHHHHHHHHH
Q 019191 107 SKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITDVK----V------NAKGFLCACVAVLSTSLQQITIGS 176 (345)
Q Consensus 107 l~~~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~~----~------~~~G~~~~l~a~~~~a~~~v~~~~ 176 (345)
++++.|+++++++++++|||+++.|+.++++.++|+++....|.+ . +..|+++.+++.++.|.+.+++|+
T Consensus 96 ~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~ 175 (303)
T PF08449_consen 96 FKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAFTGVYQEK 175 (303)
T ss_pred HhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998776531 1 123999999999999999999999
Q ss_pred HhhhcCCCHHHHHHhhhHHHHHHHHHHHHHh--hhccCCccccccccCchhHHHHHHHHHHHHHHHHHHHHhhcccCchh
Q 019191 177 LQKKYSIGSFELLSKTAPIQAVSLLVLGPFV--DYYLNGKFITTYKMTSGAILFIFLSCALAVFCNVSQYLCIGRFSATS 254 (345)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (345)
+.++++.++.+.++|++.++.+...+..+.. ++... .......++..+..+...+++++......+..+++.||+.
T Consensus 176 ~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~--~~~f~~~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~ 253 (303)
T PF08449_consen 176 LFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRS--AIRFISAHPSVLLYLLLFSLTGALGQFFIFYLIKKFSALT 253 (303)
T ss_pred HHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhH--HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 9999999999999999999998888777663 22111 1111112344566777788888888888888999999999
Q ss_pred HhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhhhhhhHH
Q 019191 255 FQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAVEAE 303 (345)
Q Consensus 255 ~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~~~~~~~ 303 (345)
.+++..++.++++++|++++++++++.+++|.+++..|..+|++.++|+
T Consensus 254 ~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~ 302 (303)
T PF08449_consen 254 TTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK 302 (303)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence 9999999999999999999999999999999999999999999877653
No 8
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.96 E-value=1.4e-26 Score=210.03 Aligned_cols=263 Identities=17% Similarity=0.171 Sum_probs=189.9
Q ss_pred HHHHHhhccCCcccchhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHH-HHHhhhhhhhcc-cchhHHH
Q 019191 28 MANKQLMSSSGYAFSFATTLTGFHFAVTALVGLVSNATGLSASKHVPLWELLWFSIVAN-MSIAGMNFSLML-NSVGFYQ 105 (345)
Q Consensus 28 ~~~K~~l~~~~~~~~~P~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~al~~-~~~s~~~ 105 (345)
...|..+++ ++ |..+.++|+.++++.+..+.++ ++.+++.+...+++.. ....+.+.+++| .+++.+.
T Consensus 21 ~~~k~~~~~----~~-p~~~~~~R~~~a~~~l~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~ 90 (299)
T PRK11453 21 VVIKVGLHN----MP-PLMLAGLRFMLVAFPAIFFVAR-----PKVPLNLLLGYGLTISFGQFAFLFCAINFGMPAGLAS 90 (299)
T ss_pred HHHHHHHhc----CC-HHHHHHHHHHHHHHHHHHHhcC-----CCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 568999988 99 9999999999877655444321 1223445555566533 344456678887 6889999
Q ss_pred HHhhhhHHHHHHHHHHHhccccChhhhhhhhhhhhcceeeeecc---ccccchhHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 019191 106 ISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITD---VKVNAKGFLCACVAVLSTSLQQITIGSLQKKYS 182 (345)
Q Consensus 106 ~l~~~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l~~~~~---~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~ 182 (345)
++.++.|+++.+++++++|||++++++++++++++|+.++..++ .+.+..|+.++++++++|+.|.++.|+..++.+
T Consensus 91 ~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~ 170 (299)
T PRK11453 91 LVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHST 170 (299)
T ss_pred HHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 99999999999999999999999999999999999998876542 223457999999999999999999999765432
Q ss_pred -CCHHHHHHhhhHHHHHHHHHHHHHhhhccCCccccccccCchhHHHHHHHH-HHHHHHHHHHHHhhcccCchhHhHHhh
Q 019191 183 -IGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSC-ALAVFCNVSQYLCIGRFSATSFQVLGH 260 (345)
Q Consensus 183 -~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (345)
........+.+..+.+.+.......+..... ......++...+..+++.+ +.+...+..+++.+++.++.+++.+.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~ 249 (299)
T PRK11453 171 RPAVMSLVVWSALIPIIPFFVASLILDGSATM-IHSLVTIDMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSL 249 (299)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhcCchhh-hhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 2223334444444443333332222221000 0000123333444444444 444455666678899999999999999
Q ss_pred HHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhhhhhh
Q 019191 261 MKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAVE 301 (345)
Q Consensus 261 l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~~~~~ 301 (345)
++|+++.++|++++||++++.+++|.++++.|+.+..+.++
T Consensus 250 l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 250 LVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence 99999999999999999999999999999999998766543
No 9
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.96 E-value=1.1e-26 Score=209.33 Aligned_cols=275 Identities=18% Similarity=0.199 Sum_probs=217.1
Q ss_pred HHHHHHHHHHHhhccCCcccchhhHHHHHHHHHHHHHHHHH--HhcCC---CCCCCCchhHHHHHHHHHHHHHhhhhhhh
Q 019191 22 SSVGIIMANKQLMSSSGYAFSFATTLTGFHFAVTALVGLVS--NATGL---SASKHVPLWELLWFSIVANMSIAGMNFSL 96 (345)
Q Consensus 22 ~s~~~~~~~K~~l~~~~~~~~~P~~l~~~r~~~~~~~l~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~al 96 (345)
|..+....++++-++ |++.|.+.++..++.-.++-... .|++. .+..+.+|++.+.++++-..++++.+.|+
T Consensus 24 ~~~~t~~~s~~l~~~---~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~aN~~~v~a~ 100 (334)
T PF06027_consen 24 CITGTGTFSSLLANK---GVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVEANYLVVLAY 100 (334)
T ss_pred HHHhHHHHHHHHHhc---CccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445566666544 67789999888887655543322 22221 11234566667778999999999999999
Q ss_pred cccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhhhhhcceeeeeccc---------cccchhHHHHHHHHHHH
Q 019191 97 MLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITDV---------KVNAKGFLCACVAVLST 167 (345)
Q Consensus 97 ~~~~~s~~~~l~~~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~---------~~~~~G~~~~l~a~~~~ 167 (345)
+|++.+.++++.+++.+++++++++++|+|+++.|++|++++++|++++...|. +....|++++++++++|
T Consensus 101 ~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~a~ly 180 (334)
T PF06027_consen 101 QYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLGAILY 180 (334)
T ss_pred hcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998776652 23568999999999999
Q ss_pred HHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhhccCCccccccccCchhHHHHHHHHHHHHHHHHHHHHhh
Q 019191 168 SLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCALAVFCNVSQYLCI 247 (345)
Q Consensus 168 a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (345)
|.++++.|+..++ .+..+.+.+..+++.++..+...+.|.. .....+|+......++..+++-+..+...-..+
T Consensus 181 a~~nV~~E~~v~~--~~~~~~lg~~Glfg~ii~~iq~~ile~~----~i~~~~w~~~~~~~~v~~~~~lf~~y~l~p~~l 254 (334)
T PF06027_consen 181 AVSNVLEEKLVKK--APRVEFLGMLGLFGFIISGIQLAILERS----GIESIHWTSQVIGLLVGYALCLFLFYSLVPIVL 254 (334)
T ss_pred HHHHHHHHHhccc--CCHHHHHHHHHHHHHHHHHHHHHheehh----hhhccCCChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998885 4678888888888888777776666542 344456665555555555555555555556679
Q ss_pred cccCchhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhhhhhhHHHh
Q 019191 248 GRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAVEAEKQ 305 (345)
Q Consensus 248 ~~~~~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~~~~~~~~~ 305 (345)
+..||+..++-.....+.+++++++++|+++++..++|.+++++|.++|+..++++++
T Consensus 255 ~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~ 312 (334)
T PF06027_consen 255 RMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEE 312 (334)
T ss_pred HhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcccc
Confidence 9999999999999999999999999999999999999999999999999987655433
No 10
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.95 E-value=5.3e-26 Score=205.52 Aligned_cols=260 Identities=9% Similarity=0.019 Sum_probs=195.5
Q ss_pred HHHHHHhhccCCcccchhhHHHHHHHHHHHHHHHHHHhcCCCC-CCCCchhHHHHHHHHH-HHHHhhhhhhh-cccchhH
Q 019191 27 IMANKQLMSSSGYAFSFATTLTGFHFAVTALVGLVSNATGLSA-SKHVPLWELLWFSIVA-NMSIAGMNFSL-MLNSVGF 103 (345)
Q Consensus 27 ~~~~K~~l~~~~~~~~~P~~l~~~r~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~al-~~~~~s~ 103 (345)
..+.|..+++ .+ |..+++.|+.++.+++..+...++.+ +++.++++....|.+. .....+.+++. ++++++.
T Consensus 24 ~~~~K~~~~~----~~-p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~ 98 (292)
T PRK11272 24 YLVIRIGVES----WP-PLMMAGVRFLIAGILLLAFLLLRGHPLPTLRQWLNAALIGLLLLAVGNGMVTVAEHQNVPSGI 98 (292)
T ss_pred HHHHHHHhcc----CC-HHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHH
Confidence 3679999888 99 99999999999987766544322221 2233445555566554 44566778888 9999999
Q ss_pred HHHHhhhhHHHHHHHHHHHhccccChhhhhhhhhhhhcceeeeec-cccccchhHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 019191 104 YQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTIT-DVKVNAKGFLCACVAVLSTSLQQITIGSLQKKYS 182 (345)
Q Consensus 104 ~~~l~~~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l~~~~-~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~ 182 (345)
++++.++.|+++.+++.+ +|||+++.++.|++++++|+.+...+ +.+.+..|++++++++++||.+.+..|+..++
T Consensus 99 a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~-- 175 (292)
T PRK11272 99 AAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNPWGAILILIASASWAFGSVWSSRLPLP-- 175 (292)
T ss_pred HHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcccccchHHHHHHHHHHHHHHHHHHHHHhcCCC--
Confidence 999999999999999986 69999999999999999999887543 33455689999999999999999999986432
Q ss_pred CCHHHHHHhhhHHHHHHHHHHHHHhhhccCCccccccccCchhHHHHHHHHH-HHHHHHHHHHHhhcccCchhHhHHhhH
Q 019191 183 IGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCA-LAVFCNVSQYLCIGRFSATSFQVLGHM 261 (345)
Q Consensus 183 ~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l 261 (345)
++.....+....++..+.+.....+.. ... ..+...+..+.+.++ .+...+...++++++.++.+.+++.++
T Consensus 176 -~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l 248 (292)
T PRK11272 176 -VGMMAGAAEMLAAGVVLLIASLLSGER----LTA--LPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYV 248 (292)
T ss_pred -cchHHHHHHHHHHHHHHHHHHHHcCCc----ccc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 234455666666666655554332211 000 112233334444443 445566667789999999999999999
Q ss_pred HHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhhhhhh
Q 019191 262 KTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAVE 301 (345)
Q Consensus 262 ~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~~~~~ 301 (345)
+|+++++++++++||++|+.+++|.++++.|+.+.++.++
T Consensus 249 ~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~ 288 (292)
T PRK11272 249 NPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY 288 (292)
T ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999765433
No 11
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.95 E-value=1e-25 Score=203.99 Aligned_cols=260 Identities=9% Similarity=0.020 Sum_probs=183.5
Q ss_pred HHHHHhhccCCcccchhhHHHHHHHHHHHHHHHHHHh-cCCCCC---CCCchhHH---HHHHHHHHHHHhhhhhhhcccc
Q 019191 28 MANKQLMSSSGYAFSFATTLTGFHFAVTALVGLVSNA-TGLSAS---KHVPLWEL---LWFSIVANMSIAGMNFSLMLNS 100 (345)
Q Consensus 28 ~~~K~~l~~~~~~~~~P~~l~~~r~~~~~~~l~~~~~-~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~al~~~~ 100 (345)
...|.. .+ ++ |..+..+|++++.+++..... ++..+. +..+++++ ...++..+.+..+.++|+++++
T Consensus 25 ~~~k~~-~~----~~-~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 98 (296)
T PRK15430 25 AYFKLI-YY----VP-ADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVLIGGNWLLFIWAVNNHH 98 (296)
T ss_pred HHHHHh-cC----CC-HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 456875 56 89 999999999998875554332 111111 01123332 2334456668889999999999
Q ss_pred hhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhhhhhcceeeeeccccccchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 019191 101 VGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITDVKVNAKGFLCACVAVLSTSLQQITIGSLQKK 180 (345)
Q Consensus 101 ~s~~~~l~~~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~ 180 (345)
++.++++.++.|+++.+++++++|||+++++|.+++++++|+.++..++.+. ..++++++++||.|.+..|+..++
T Consensus 99 ~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~~----~~~~l~aa~~~a~~~i~~r~~~~~ 174 (296)
T PRK15430 99 MLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSL----PIIALGLAFSFAFYGLVRKKIAVE 174 (296)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCc----cHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999999999876433222 256888999999999999886432
Q ss_pred cCCCHHHHHHhhhHHHHHHHHHHHHHhhhccCCccccccccCc-hhHHHHHHHHHHHHHHHHHHHHhhcccCchhHhHHh
Q 019191 181 YSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTS-GAILFIFLSCALAVFCNVSQYLCIGRFSATSFQVLG 259 (345)
Q Consensus 181 ~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (345)
...+......+..+.+..... +..+.. ......++ ..+..+...++.+...+.+.++++++.++..++.+.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~-----~~~~~~~~~~~~~~~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~ 246 (296)
T PRK15430 175 AQTGMLIETMWLLPVAAIYLF---AIADSS-----TSHMGQNPMSLNLLLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQ 246 (296)
T ss_pred CchhHHHHHHHHHHHHHHHHH---HHccCC-----cccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 222223333344433332221 111110 00011111 122344444555666777788899999999999999
Q ss_pred hHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhhhhhhHHHh
Q 019191 260 HMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAVEAEKQ 305 (345)
Q Consensus 260 ~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~~~~~~~~~ 305 (345)
+++|+++.++|++++||++++.+++|+++++.|+.+...+.....|
T Consensus 247 ~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~~~~~~ 292 (296)
T PRK15430 247 YIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDAIYTQR 292 (296)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999998887766554433
No 12
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.95 E-value=2.9e-26 Score=196.41 Aligned_cols=285 Identities=20% Similarity=0.285 Sum_probs=240.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhHHHHHHHHHHHHHHHHHHhcC-C-CC--CCCCch----hHHH
Q 019191 8 SVVSDVGAWAMNVISSVGIIMANKQLMSSSGYAFSFATTLTGFHFAVTALVGLVSNATG-L-SA--SKHVPL----WELL 79 (345)
Q Consensus 8 ~~~~~~~~~~~~~~~s~~~~~~~K~~l~~~~~~~~~P~~l~~~r~~~~~~~l~~~~~~~-~-~~--~~~~~~----~~~~ 79 (345)
+++...+....++++|+++.+.+|+.-.+ |++|++.+.+|+++-.++....++.. . .+ +...+| ++..
T Consensus 13 ~rV~~L~lVl~yY~~Si~Ltf~~~~~~~~----f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~a 88 (349)
T KOG1443|consen 13 NRVLTLALVLLYYFLSIGLTFYFKWLTKN----FHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLA 88 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcC----cCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhh
Confidence 34444444455669999999999999888 99999999999999888777665422 1 12 233445 4466
Q ss_pred HHHHHHHHHHhhhhhhhcccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhhhhhcceeeeeccccccchhHHH
Q 019191 80 WFSIVANMSIAGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITDVKVNAKGFLC 159 (345)
Q Consensus 80 ~~~~~~~~~~~~~~~al~~~~~s~~~~l~~~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~G~~~ 159 (345)
|.++..+..+++.|++++|++.+.+++.++++++|+.+++.++.-||+++.-..-+.++.+|+.+.++++.+++..|+.+
T Consensus 89 Ptalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf~i~Gf~l 168 (349)
T KOG1443|consen 89 PTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQFNIEGFFL 168 (349)
T ss_pred hhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccceeehhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc---CCCHHHHHHhhhHHHHHHHHHHHHHhhhccCCccccccc-cC----chhHHHHHH
Q 019191 160 ACVAVLSTSLQQITIGSLQKKY---SIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYK-MT----SGAILFIFL 231 (345)
Q Consensus 160 ~l~a~~~~a~~~v~~~~~~~~~---~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~ 231 (345)
+..++++.+++..+.|+++++. ..+|....++..+...+.+++.....|+.........+. .+ ......+.+
T Consensus 169 v~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l 248 (349)
T KOG1443|consen 169 VLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISL 248 (349)
T ss_pred HHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHH
Confidence 9999999999999999998764 357888999999999999999988887643221111111 11 223346777
Q ss_pred HHHHHHHHHHHHHHhhcccCchhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHh
Q 019191 232 SCALAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIY 296 (345)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~ 296 (345)
++..+++.-.+-+..+.+++..+.++++..+.+.+.+++..+.+++++..+++|..++..|+..+
T Consensus 249 ~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 249 GGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 77888888888889999999999999999999999999999999999999999999999999998
No 13
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.95 E-value=1.7e-25 Score=202.15 Aligned_cols=258 Identities=12% Similarity=0.063 Sum_probs=189.6
Q ss_pred HHHHHHHHHHHhhccCCcccchhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHhhhhhhhcccch
Q 019191 22 SSVGIIMANKQLMSSSGYAFSFATTLTGFHFAVTALVGLVSNATGLSASKHVPLWELLWFSIVANMSIAGMNFSLMLNSV 101 (345)
Q Consensus 22 ~s~~~~~~~K~~l~~~~~~~~~P~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~ 101 (345)
+..+.....|+.+++ +| |..+.++|++++.+++..+.+.+..+.++.+++.....|++......+.+++++|+++
T Consensus 23 ~~~~~~~~~K~~~~~----~~-~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~ 97 (293)
T PRK10532 23 SIQSGASLAKSLFPL----VG-APGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGVSLGGMNYLFYLSIQTVPL 97 (293)
T ss_pred HHHhhHHHHHHHHHH----cC-HHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccH
Confidence 333445679999998 99 9999999999998877665433222223344555667777777777888899999999
Q ss_pred hHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhhhhhcceeeeecc---ccccchhHHHHHHHHHHHHHHHHHHHHHh
Q 019191 102 GFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITD---VKVNAKGFLCACVAVLSTSLQQITIGSLQ 178 (345)
Q Consensus 102 s~~~~l~~~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l~~~~~---~~~~~~G~~~~l~a~~~~a~~~v~~~~~~ 178 (345)
+.+.++..+.|+++.+++ +||+++. .++.++++|+.++...+ .+.+..|++++++++++||.|.+..|+..
T Consensus 98 ~~a~~l~~t~Pi~~~ll~----~~~~~~~--~~~~i~~~Gv~li~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~r~~~ 171 (293)
T PRK10532 98 GIAVALEFTGPLAVALFS----SRRPVDF--VWVVLAVLGLWFLLPLGQDVSHVDLTGAALALGAGACWAIYILSGQRAG 171 (293)
T ss_pred HHHHHHHHHHHHHHHHHh----cCChHHH--HHHHHHHHHHheeeecCCCcccCChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999886 3565544 45667789988765322 23456799999999999999999999976
Q ss_pred hhcCCCHHHHHHhhhHHHHHHHHHHHHHhhhccCCccccccccCchhHH-HHHHHHHHHHHHHHHHHHhhcccCchhHhH
Q 019191 179 KKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAIL-FIFLSCALAVFCNVSQYLCIGRFSATSFQV 257 (345)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (345)
++ .++... .+....+++.+.+.....+ . . ..++...+. .+..+.+++...+..+++.+++.++.++++
T Consensus 172 ~~--~~~~~~-~~~~~~~~~~l~~~~~~~~-----~-~--~~~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~ 240 (293)
T PRK10532 172 AE--HGPATV-AIGSLIAALIFVPIGALQA-----G-E--ALWHWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGT 240 (293)
T ss_pred cc--CCchHH-HHHHHHHHHHHHHHHHHcc-----C-c--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHH
Confidence 53 345444 3444555555444332211 1 0 112222222 234444455566667788999999999999
Q ss_pred HhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhhhhhh
Q 019191 258 LGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAVE 301 (345)
Q Consensus 258 ~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~~~~~ 301 (345)
+.+++|+++.++|++++||++++.+++|.++++.|+..+.+..+
T Consensus 241 ~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~ 284 (293)
T PRK10532 241 LMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIR 284 (293)
T ss_pred HHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999876543
No 14
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.95 E-value=2.1e-25 Score=198.53 Aligned_cols=251 Identities=14% Similarity=0.063 Sum_probs=192.5
Q ss_pred HHHHHhhccCCcccchhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHHHHHHH-HHHHHHhhhhhhhcccchhHHHH
Q 019191 28 MANKQLMSSSGYAFSFATTLTGFHFAVTALVGLVSNATGLSASKHVPLWELLWFSI-VANMSIAGMNFSLMLNSVGFYQI 106 (345)
Q Consensus 28 ~~~K~~l~~~~~~~~~P~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~al~~~~~s~~~~ 106 (345)
+..|+.+++ ..| |......|++.+.+++....+.+ +++.+++.....+. ....+..+.++|++|++++.+++
T Consensus 6 ~~~k~~~~~---~~~-~~~~~~~r~~~~~l~l~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~i 78 (260)
T TIGR00950 6 VVIGQYLEG---QVP-LYFAVFRRLIFALLLLLPLLRRR---PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAAL 78 (260)
T ss_pred HHHHHHHhc---CCC-HHHHHHHHHHHHHHHHHHHHHhc---cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHH
Confidence 568998875 356 88888899988877766554433 23334444555554 46678888999999999999999
Q ss_pred HhhhhHHHHHHHHHHHhccccChhhhhhhhhhhhcceeeeecc-ccccchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCH
Q 019191 107 SKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITD-VKVNAKGFLCACVAVLSTSLQQITIGSLQKKYSIGS 185 (345)
Q Consensus 107 l~~~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l~~~~~-~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~ 185 (345)
+.++.|+++.+++.+++|||++++++.+++++++|+.++..++ .+.+..|+.++++++++|+.+.+..|+..++.+.++
T Consensus 79 i~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~ 158 (260)
T TIGR00950 79 LLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFALGTVLYKRLVKKEGPEL 158 (260)
T ss_pred HHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchH
Confidence 9999999999999999999999999999999999998865443 345568999999999999999999999876544445
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhhhccCCccccccccCchhHHHHHHHH-HHHHHHHHHHHHhhcccCchhHhHHhhHHHH
Q 019191 186 FELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSC-ALAVFCNVSQYLCIGRFSATSFQVLGHMKTV 264 (345)
Q Consensus 186 ~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pv 264 (345)
.....+....+.+.+.+.....++. . ..+...+..+...+ +.....+...++++++.++.+++.+.+++|+
T Consensus 159 ~~~~~~~~~~~~~~l~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv 230 (260)
T TIGR00950 159 LQFTGWVLLLGALLLLPFAWFLGPN-----P---QALSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPL 230 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC-----C---CcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 5555555666666655544332211 1 11222333334344 4445566667789999999999999999999
Q ss_pred HHHHhhHhhcCCcccccchhhHHHHhHHH
Q 019191 265 CVLTLGWLLFDSALTFKNISGMILAVVGM 293 (345)
Q Consensus 265 ~~~~~s~l~~~e~~s~~~iiG~~lii~G~ 293 (345)
++++++++++||++++.+++|.++++.|+
T Consensus 231 ~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 231 VALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999986
No 15
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=6.1e-26 Score=191.30 Aligned_cols=285 Identities=17% Similarity=0.174 Sum_probs=242.0
Q ss_pred HHHHHHHHHHHHhhccCCcccchhhHHHHHHHHHHHHHHHHHHhc-----CCCCCCC--Cc---hhHHHHHHHHHHHHHh
Q 019191 21 ISSVGIIMANKQLMSSSGYAFSFATTLTGFHFAVTALVGLVSNAT-----GLSASKH--VP---LWELLWFSIVANMSIA 90 (345)
Q Consensus 21 ~~s~~~~~~~K~~l~~~~~~~~~P~~l~~~r~~~~~~~l~~~~~~-----~~~~~~~--~~---~~~~~~~~~~~~~~~~ 90 (345)
.+|+++++.||++++......+.|.+.++.|.+.+..+...+.+. +....++ .+ .++++|+++.+...+.
T Consensus 38 v~SI~~vf~nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~ 117 (347)
T KOG1442|consen 38 VTSIGLVFLNKHLLSSLVVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMIS 117 (347)
T ss_pred eeeehhhhhHHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeeehh
Confidence 488999999999999866667789999999999998877766431 1111122 22 3679999999999999
Q ss_pred hhhhhhcccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhhhhhcceeeeecc---ccccchhHHHHHHHHHHH
Q 019191 91 GMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITD---VKVNAKGFLCACVAVLST 167 (345)
Q Consensus 91 ~~~~al~~~~~s~~~~l~~~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l~~~~~---~~~~~~G~~~~l~a~~~~ 167 (345)
+.|++++|++++++++-++++.+|+++++++++|+|-+..-..++.++++|..+.+..+ ...++.|.++++.+.++-
T Consensus 118 fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~~~~ls~~GvifGVlaSl~v 197 (347)
T KOG1442|consen 118 FNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGSTGTLSWIGVIFGVLASLAV 197 (347)
T ss_pred ccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheeccccccccCccchhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988777 456889999999999999
Q ss_pred HHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhhccCCccccc--cccCchhHHHHHHHHHHHHHHHHHHHH
Q 019191 168 SLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITT--YKMTSGAILFIFLSCALAVFCNVSQYL 245 (345)
Q Consensus 168 a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (345)
|+..++.||...+.+...+.+..|++..+.+..++...+.++. +.... ..+...+|.++.+++++++..++...+
T Consensus 198 Alnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~---~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyvTg~ 274 (347)
T KOG1442|consen 198 ALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEF---QAVVGFPHLPAIKFWILMTLSGLFGFAMGYVTGW 274 (347)
T ss_pred HHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchH---HHHcCcccchHHHHHHHHHHHHHHHHHhhheeeE
Confidence 9999999987666666788899999988887776655443221 11111 224567888999999999999999999
Q ss_pred hhcccCchhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhhhhhhHHHhhcc
Q 019191 246 CIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAVEAEKQRNA 308 (345)
Q Consensus 246 ~~~~~~~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~~~~~~~~~~~~ 308 (345)
-+|-+||.++++-+..+.....+++..+++|..+..-|-|-.+++.|...|++.|++++++.+
T Consensus 275 QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~~ 337 (347)
T KOG1442|consen 275 QIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKAS 337 (347)
T ss_pred EEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999888766554
No 16
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.91 E-value=3e-23 Score=170.10 Aligned_cols=281 Identities=18% Similarity=0.234 Sum_probs=242.5
Q ss_pred HHHHHHHHHHHHhhccCCcccchhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHhhhhhhhcccc
Q 019191 21 ISSVGIIMANKQLMSSSGYAFSFATTLTGFHFAVTALVGLVSNATGLSASKHVPLWELLWFSIVANMSIAGMNFSLMLNS 100 (345)
Q Consensus 21 ~~s~~~~~~~K~~l~~~~~~~~~P~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~ 100 (345)
..|+.|++.||++++. .||+-.+.+.+.|.+.+.+.+..+++.|..+.+..+.++|++.+++..+.++....+++|.+
T Consensus 16 ~sSIlmTltNKyVls~--~gfnMnflll~vQSlvcvv~l~iLk~l~~~~fR~t~aK~WfpiSfLLv~MIyt~SKsLqyL~ 93 (309)
T COG5070 16 FSSILMTLTNKYVLSN--LGFNMNFLLLAVQSLVCVVGLLILKFLRLVEFRLTKAKKWFPISFLLVVMIYTSSKSLQYLA 93 (309)
T ss_pred HHHHHHHHhhHheecC--CCCchhhHHHHHHHHHHHHHHHHHHHHhHhheehhhhhhhcCHHHHHHHHHHhcccceeeee
Confidence 6889999999999999 55655688999999999888888877666665666778899999999999899999999999
Q ss_pred hhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhhhhhcceeeeecccc-------ccchhHHHHHHHHHHHHHHHHH
Q 019191 101 VGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITDVK-------VNAKGFLCACVAVLSTSLQQIT 173 (345)
Q Consensus 101 ~s~~~~l~~~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~~-------~~~~G~~~~l~a~~~~a~~~v~ 173 (345)
++.+++.+.++.+.++....++++.|.+..+..+.++.+..-....++|.+ .--.|++|....+++.+.+...
T Consensus 94 vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN~GY~Wm~~NclssaafVL~ 173 (309)
T COG5070 94 VPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILNPGYLWMFTNCLSSAAFVLI 173 (309)
T ss_pred eeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccCCceEEEehhhHhHHHHHHH
Confidence 999999999999999999999999999999999999999999998888862 1126999999999999999999
Q ss_pred HHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhhccCCccccccccCchhHHHHHHHHHHHHHHHHHHHHhhcccCch
Q 019191 174 IGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCALAVFCNVSQYLCIGRFSAT 253 (345)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (345)
.|+..+-.+....+.++|..+.+.-+++.+..+.|+|..++... ..+...+..++.++++++...++.-|+++-+|.+
T Consensus 174 mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~an--nl~~d~l~am~ISgl~svgiSy~saWcvrVtSST 251 (309)
T COG5070 174 MRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLAN--NLSVDSLMAMFISGLCSVGISYCSAWCVRVTSST 251 (309)
T ss_pred HHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhc--CCChHHHHHHHHHHHHHhhhhhccceeEeehhhh
Confidence 99876655667788999999999888888888888875543332 2333345578889999999999999999999999
Q ss_pred hHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhhhhhhHHHh
Q 019191 254 SFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAVEAEKQ 305 (345)
Q Consensus 254 ~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~~~~~~~~~ 305 (345)
+.++++.++.....+.|.++|+|+.+...+..+.+-..+..+|...+.++++
T Consensus 252 tySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k~q 303 (309)
T COG5070 252 TYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQQ 303 (309)
T ss_pred HHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999988888899887655433
No 17
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.89 E-value=2e-21 Score=174.69 Aligned_cols=211 Identities=12% Similarity=0.137 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHhhhhhhhcccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhhhhhcceeeeeccc-cccchhH
Q 019191 79 LWFSIVANMSIAGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITDV-KVNAKGF 157 (345)
Q Consensus 79 ~~~~~~~~~~~~~~~~al~~~~~s~~~~l~~~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~-~~~~~G~ 157 (345)
...++....+..+.+.++++.+++.++.+.++.|+++.+++++++|||+++.+|.|++++++|+.++..++. +.+..|+
T Consensus 67 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~~~~g~ 146 (281)
T TIGR03340 67 AISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQHRRKAY 146 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccccchhHH
Confidence 334455667788889999999999999999999999999999999999999999999999999988764432 3455788
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCHHH-HHHhhhHHHHHHH-HHHHHHhhhccCCccccccccCchhHHHHHHHHHH
Q 019191 158 LCACVAVLSTSLQQITIGSLQKKYSIGSFE-LLSKTAPIQAVSL-LVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCAL 235 (345)
Q Consensus 158 ~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~v~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (345)
.++++++++|+.|.+..|+..++ .++.. ...+. ..+.+.. .+..+....... ... ...+...+..+..+++.
T Consensus 147 ~~~l~aal~~a~~~i~~k~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~ 220 (281)
T TIGR03340 147 AWALAAALGTAIYSLSDKAAALG--VPAFYSALGYL-GIGFLAMGWPFLLLYLKRHG-RSM--FPYARQILPSATLGGLM 220 (281)
T ss_pred HHHHHHHHHHHHhhhhccccccc--hhcccccHHHH-HHHHHHHHHHHHHHHHHHhc-cch--hhhHHHHHHHHHHHHHH
Confidence 89999999999999988875332 22211 11111 1112111 122221111000 000 01112223445556666
Q ss_pred HHHHHHHHHHhhcccCchhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHH
Q 019191 236 AVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVI 295 (345)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l 295 (345)
+...+...++.+++.++...+.+.+++|+++.++|++++||+++..+++|.++++.|+.+
T Consensus 221 s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 221 IGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 667777788899999999999999999999999999999999999999999999999875
No 18
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.86 E-value=3.3e-19 Score=158.26 Aligned_cols=228 Identities=12% Similarity=0.055 Sum_probs=154.8
Q ss_pred HHHHHHhhccCCcccchhhHHHHHHHHHHHHHHHHHH--hcCCC----CCCCCchh----HHHHHHHHHHHHHhhhhhhh
Q 019191 27 IMANKQLMSSSGYAFSFATTLTGFHFAVTALVGLVSN--ATGLS----ASKHVPLW----ELLWFSIVANMSIAGMNFSL 96 (345)
Q Consensus 27 ~~~~K~~l~~~~~~~~~P~~l~~~r~~~~~~~l~~~~--~~~~~----~~~~~~~~----~~~~~~~~~~~~~~~~~~al 96 (345)
.+..|+ +.+ ++ |..+.++|++++.+++.++. +.+++ +.++.+++ .....+++...+..+.++|+
T Consensus 18 ~~~~k~-~~~----~~-~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~ 91 (256)
T TIGR00688 18 YYYSKL-LKP----LP-ATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLIGFNWWLFIWAV 91 (256)
T ss_pred HHHHHH-hcc----CC-HHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366887 556 89 99999999999887655432 22111 01111122 23445666777888999999
Q ss_pred cccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhhhhhcceeeeeccccccchhHHHHHHHHHHHHHHHHHHHH
Q 019191 97 MLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITDVKVNAKGFLCACVAVLSTSLQQITIGS 176 (345)
Q Consensus 97 ~~~~~s~~~~l~~~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~ 176 (345)
++++++.++++.++.|+++++++++++|||+++++|++++++++|++++..++.+.+ .++++++++||.|.+..|+
T Consensus 92 ~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~~----~~~l~aa~~~a~~~i~~~~ 167 (256)
T TIGR00688 92 NNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSLP----WEALVLAFSFTAYGLIRKA 167 (256)
T ss_pred HcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCch----HHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999987654332222 4678999999999999998
Q ss_pred HhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhhccCCccccccccCchhHHHHHHHHHHHHHHHHHHHHhhcccCchhHh
Q 019191 177 LQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCALAVFCNVSQYLCIGRFSATSFQ 256 (345)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (345)
..++ +..+....+. .......+. .....+.. ....+ +...|..++..++.+...+.+.+.++++.++...+
T Consensus 168 ~~~~---~~~~~~~~~~-~~~~~~~~~-~~~~~~~~---~~~~~-~~~~~~~l~~~g~~t~i~~~l~~~a~~~~~a~~~s 238 (256)
T TIGR00688 168 LKNT---DLAGFCLETL-SLMPVAIYY-LLQTDFAT---VQQTN-PFPIWLLLVLAGLITGTPLLAFVIAANRLPLNLLG 238 (256)
T ss_pred cCCC---CcchHHHHHH-HHHHHHHHH-HHHhccCc---ccccC-chhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 6432 2222221111 111111111 11111110 00001 11133444445555667777788899999999999
Q ss_pred HHhhHHHHHHHHhhHhh
Q 019191 257 VLGHMKTVCVLTLGWLL 273 (345)
Q Consensus 257 ~~~~l~pv~~~~~s~l~ 273 (345)
++.+++|+++.+++.+.
T Consensus 239 ~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 239 LLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999999764
No 19
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.85 E-value=1.8e-18 Score=156.00 Aligned_cols=256 Identities=18% Similarity=0.152 Sum_probs=182.9
Q ss_pred HHHHHhhccCCcccchhhHHHHHHHHHHHHHHHHHHhcCC--CCCCCCchhH-HHHHHHHHHHHHhhhhhhhcccchhHH
Q 019191 28 MANKQLMSSSGYAFSFATTLTGFHFAVTALVGLVSNATGL--SASKHVPLWE-LLWFSIVANMSIAGMNFSLMLNSVGFY 104 (345)
Q Consensus 28 ~~~K~~l~~~~~~~~~P~~l~~~r~~~~~~~l~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~al~~~~~s~~ 104 (345)
...|...++ ..+ +......|.+.+.+......+++. ..+.+.+++. .+..++.......+.+.++++++++.+
T Consensus 24 ~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (292)
T COG0697 24 IALKLAVES---LDP-FLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLALPFLLLFLALKYTSASVA 99 (292)
T ss_pred HHHHHHhcc---cCC-hHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHhhcchHHH
Confidence 445555443 133 555566699988877443443322 1222222223 334445566677888889999999999
Q ss_pred HHHhhhhHHHHHHHHH-HHhccccChhhhhhhhhhhhcceeeeecccccc---chhHHHHHHHHHHHHHHHHHHHHHhhh
Q 019191 105 QISKLSMIPVVCVMEW-ILHNKHYSKEVKMAVVVVVIGVGVCTITDVKVN---AKGFLCACVAVLSTSLQQITIGSLQKK 180 (345)
Q Consensus 105 ~~l~~~~p~~~~~l~~-l~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~---~~G~~~~l~a~~~~a~~~v~~~~~~~~ 180 (345)
+++.++.|+++.++++ +++|||+++.++.+++++++|+.++..++...+ ..|..+++.+++++|.+.+..|+..
T Consensus 100 ~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g~~~~l~a~~~~a~~~~~~~~~~-- 177 (292)
T COG0697 100 SLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLLLALAAALLWALYTALVKRLS-- 177 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 9999999999999997 777999999999999999999999988776443 5899999999999999999999876
Q ss_pred cCCCHHHHHH-hhhHHHHHHHHHHHHHhhhccCCccccccccCchhHHHHHHHHHHHH-HHHHHHHHhhcccCchhHhHH
Q 019191 181 YSIGSFELLS-KTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCALAV-FCNVSQYLCIGRFSATSFQVL 258 (345)
Q Consensus 181 ~~~~~~~~~~-~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 258 (345)
+.++..... +... ...+.......... . .+.+...+..+...++.+. ..+...++.+++.++...+.+
T Consensus 178 -~~~~~~~~~~~~~~--~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~ 247 (292)
T COG0697 178 -RLGPVTLALLLQLL--LALLLLLLFFLSGF----G---APILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALL 247 (292)
T ss_pred -CCChHHHHHHHHHH--HHHHHHHHHHhccc----c---ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 234444444 3322 11111111111110 1 1222233344444554444 466677789999999999999
Q ss_pred hhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhhhh
Q 019191 259 GHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWA 299 (345)
Q Consensus 259 ~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~~~ 299 (345)
.+++|+++.++++++++|+++..+++|..+++.|+.+.+..
T Consensus 248 ~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 248 SLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999998765
No 20
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.82 E-value=1.9e-17 Score=142.65 Aligned_cols=283 Identities=11% Similarity=0.038 Sum_probs=202.2
Q ss_pred CCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhHHHHHHHHHHHHHHHHHHh--cCCCC--CCCCchh
Q 019191 1 METEKKSSVVSDVGAWAMNVISSVGIIMANKQLMSSSGYAFSFATTLTGFHFAVTALVGLVSNA--TGLSA--SKHVPLW 76 (345)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~s~~~~~~~K~~l~~~~~~~~~P~~l~~~r~~~~~~~l~~~~~--~~~~~--~~~~~~~ 76 (345)
|+++.+++.+..+.+...++.. .+..|.+ +. .| +..+.+.|..-+...+.+... +++++ ....+++
T Consensus 1 ~~~~~~~Gil~~l~Ay~lwG~l----p~y~kll-~~----~~-~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~ 70 (293)
T COG2962 1 MAKDSRKGILLALLAYLLWGLL----PLYFKLL-EP----LP-ATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPK 70 (293)
T ss_pred CCCcccchhHHHHHHHHHHHHH----HHHHHHH-cc----CC-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcH
Confidence 5666677777777666644443 4556665 45 78 999999999988776554322 22211 1122233
Q ss_pred H---HHHHHHHHHHHHhhhhhhhcccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhhhhhcceeeeecccccc
Q 019191 77 E---LLWFSIVANMSIAGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITDVKVN 153 (345)
Q Consensus 77 ~---~~~~~~~~~~~~~~~~~al~~~~~s~~~~l~~~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~ 153 (345)
+ ....++....+...+.+|...-.+-.+++=...+|++.++++++++|||+|+.||++++++.+||..-.....+.+
T Consensus 71 ~~~~~~l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~lp 150 (293)
T COG2962 71 TLLMLALTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSLP 150 (293)
T ss_pred HHHHHHHHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 3 3334555666777888888888888889999999999999999999999999999999999999999888888888
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhhccCCccccccccCchhHHHHHHHH
Q 019191 154 AKGFLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSC 233 (345)
Q Consensus 154 ~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (345)
+....++ ++|++|...-|+. +.++.+-...-+..-....+......+.. .. .....+...+.++...|
T Consensus 151 wval~la----~sf~~Ygl~RK~~----~v~a~~g~~lE~l~l~p~al~yl~~l~~~---~~-~~~~~~~~~~~LLv~aG 218 (293)
T COG2962 151 WVALALA----LSFGLYGLLRKKL----KVDALTGLTLETLLLLPVALIYLLFLADS---GQ-FLQQNANSLWLLLVLAG 218 (293)
T ss_pred HHHHHHH----HHHHHHHHHHHhc----CCchHHhHHHHHHHHhHHHHHHHHHHhcC---ch-hhhcCCchHHHHHHHhh
Confidence 7766655 4999999766553 45666655444332222222222222211 11 11112344455666777
Q ss_pred HHHHHHHHHHHHhhcccCchhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhhhhhhHHHh
Q 019191 234 ALAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAVEAEKQ 305 (345)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~~~~~~~~~ 305 (345)
..+..--.+....-++.+-...++..|++|....+++++++||+++..+....+.+..|+.+|..+..++++
T Consensus 219 ~vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~~~r 290 (293)
T COG2962 219 LVTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLYTAR 290 (293)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 766665555556789999999999999999999999999999999999999999999999999988765444
No 21
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.81 E-value=1.7e-17 Score=142.92 Aligned_cols=262 Identities=16% Similarity=0.153 Sum_probs=215.5
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhcCC-CCCCCCchhHHHHHHHHHHHHHhhhhhhhcccchhHHHHHhhhhHHHHHH
Q 019191 39 YAFSFATTLTGFHFAVTALVGLVSNATGL-SASKHVPLWELLWFSIVANMSIAGMNFSLMLNSVGFYQISKLSMIPVVCV 117 (345)
Q Consensus 39 ~~~~~P~~l~~~r~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~s~~~~l~~~~p~~~~~ 117 (345)
-.|..|.++.+.|-+.+.+........+. ..+.+.++.+....++....+..+++-|++|++-++..+.+++--+-+++
T Consensus 46 ~rF~~~~fL~~~q~l~~~~~s~~~l~~~k~~~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVml 125 (327)
T KOG1581|consen 46 ERFEHSLFLVFCQRLVALLVSYAMLKWWKKELSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVML 125 (327)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHH
Confidence 34666999999999999888766554322 23444567777778888888999999999999999999999999999999
Q ss_pred HHHHHhccccChhhhhhhhhhhhcceeeeeccc---------cccchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHH
Q 019191 118 MEWILHNKHYSKEVKMAVVVVVIGVGVCTITDV---------KVNAKGFLCACVAVLSTSLQQITIGSLQKKYSIGSFEL 188 (345)
Q Consensus 118 l~~l~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~---------~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~ 188 (345)
.+.++.++|++..+.+...++..|+.+....+. +.+.+|+.+.....+..++.+..++++.++++.++..+
T Consensus 126 mg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~m 205 (327)
T KOG1581|consen 126 MGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHM 205 (327)
T ss_pred HHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHH
Confidence 999999999999999999999999988654321 35678999999999999999999999999999999999
Q ss_pred HHhhhHHHHHHHHHHHHHhhhccCCccccccccCchhHHHHHHHHHHHHHHHHHHHHhhcccCchhHhHHhhHHHHHHHH
Q 019191 189 LSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCALAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLT 268 (345)
Q Consensus 189 ~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pv~~~~ 268 (345)
+++.+++.++.-.... +...... +.+.....++..+.-+..-+.++...+...|+-+++.++.+.+.....+.++++.
T Consensus 206 M~~vNLf~~i~~~~~l-i~qg~~~-~av~F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~ 283 (327)
T KOG1581|consen 206 MFGVNLFSAILNGTYL-ILQGHLL-PAVSFIKEHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIM 283 (327)
T ss_pred HHHHHHHHHHHHHHhh-hcCCCCc-hHHHHHHcChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHH
Confidence 9999998887766552 2211111 1111112345566677777888888888888889999999999999999999999
Q ss_pred hhHhhcCCcccccchhhHHHHhHHHHHhhhhhhH
Q 019191 269 LGWLLFDSALTFKNISGMILAVVGMVIYSWAVEA 302 (345)
Q Consensus 269 ~s~l~~~e~~s~~~iiG~~lii~G~~l~~~~~~~ 302 (345)
++.+.++.+++..|++|..++..|+.+-.+.+++
T Consensus 284 lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 284 LSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK 317 (327)
T ss_pred HHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence 9999999999999999999999999887666555
No 22
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.81 E-value=2.4e-17 Score=145.91 Aligned_cols=278 Identities=12% Similarity=0.083 Sum_probs=207.5
Q ss_pred HHHHHHHHHHHHHhhccCCcccchhhHHHHHHHHHHHHHHHHHHhcC--C--CC-CCCC---------chhHHHHHHHHH
Q 019191 20 VISSVGIIMANKQLMSSSGYAFSFATTLTGFHFAVTALVGLVSNATG--L--SA-SKHV---------PLWELLWFSIVA 85 (345)
Q Consensus 20 ~~~s~~~~~~~K~~l~~~~~~~~~P~~l~~~r~~~~~~~l~~~~~~~--~--~~-~~~~---------~~~~~~~~~~~~ 85 (345)
.+.+.++....||.-++++..|. |.+..++-=.+-.+++.....++ . .+ .+.. +-.++...+++|
T Consensus 24 t~~~~~l~l~l~ys~~~~~~~f~-~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~vPa~iY 102 (345)
T KOG2234|consen 24 TAQNTALTLLLRYSRTREKPMFL-PTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVSVPALIY 102 (345)
T ss_pred HHHHhhHHHHHHHHhcCCCCCcc-hhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHHHHHHHH
Confidence 35677888899999888655566 66666555444444433322111 1 11 1111 123455667788
Q ss_pred HHHHhhhhhhhcccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhhhhhcceeeeecc-----------ccccc
Q 019191 86 NMSIAGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITD-----------VKVNA 154 (345)
Q Consensus 86 ~~~~~~~~~al~~~~~s~~~~l~~~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l~~~~~-----------~~~~~ 154 (345)
.+.+-+.+.++.+.+++++++...+..+.|+++.++++++|.++.||.++++.++|+.+...+. .+..+
T Consensus 103 alqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~~~~~~n~~ 182 (345)
T KOG2234|consen 103 ALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKSESSAQNPF 182 (345)
T ss_pred HHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccCCCcccchh
Confidence 8877789999999999999999999999999999999999999999999999999999976221 13456
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhhccCCccccccccCchhHHHHHHHHH
Q 019191 155 KGFLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCA 234 (345)
Q Consensus 155 ~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (345)
.|....+.++++.++..++.+|++|+.+.+.+........++.++.+......|.......-.-..|+...|..++..++
T Consensus 183 ~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~vw~vVl~~a~ 262 (345)
T KOG2234|consen 183 LGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIVWLVVLLNAV 262 (345)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHHHHHHHHHhc
Confidence 89999999999999999999999988777766666555555665555544443322111011113466677778888877
Q ss_pred HHHHHHHHHHHhhcccCchhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhhhhhhH
Q 019191 235 LAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAVEA 302 (345)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~~~~~~ 302 (345)
.|.+..+. +|+.+...-+....+..+++.+.|+.+++-++|....+|..+++.++.+|+..+.+
T Consensus 263 gGLlvs~v----~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~ 326 (345)
T KOG2234|consen 263 GGLLVSLV----MKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPAR 326 (345)
T ss_pred cchhHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCcc
Confidence 77776655 78899999999999999999999999999999999999999999999999955444
No 23
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.79 E-value=1.1e-18 Score=144.61 Aligned_cols=258 Identities=14% Similarity=0.102 Sum_probs=207.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhcCCC-CCCCCchhHHHHHHHHHHHHHhhhhhhhcccchhHHHHHhhhhHHHHHHHH
Q 019191 41 FSFATTLTGFHFAVTALVGLVSNATGLS-ASKHVPLWELLWFSIVANMSIAGMNFSLMLNSVGFYQISKLSMIPVVCVME 119 (345)
Q Consensus 41 ~~~P~~l~~~r~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~s~~~~l~~~~p~~~~~l~ 119 (345)
|.+...+.+.|..+..+..-++...+.. +..+.+-+.....++-+.+.....|.+++|++-++.-+-+++.|+-+++++
T Consensus 50 FTfalaLVf~qC~~N~vfAkvl~~ir~~~~~D~t~~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilG 129 (337)
T KOG1580|consen 50 FTFALALVFFQCTANTVFAKVLFLIRKKTEIDNTPTKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILG 129 (337)
T ss_pred ehHHHHHHHHHHHHHHHHHHhheeecccccccCCcchHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeee
Confidence 6677888899998888877655443322 223334455667788899999999999999999999999999999999999
Q ss_pred HHHhccccChhhhhhhhhhhhcceeeeeccc-------cccchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhh
Q 019191 120 WILHNKHYSKEVKMAVVVVVIGVGVCTITDV-------KVNAKGFLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKT 192 (345)
Q Consensus 120 ~l~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~-------~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~ 192 (345)
+++.|+++++.+..+++.+++|+++..+++. +....|-++.+++--..+.....++++.+.+..+...+++++
T Consensus 130 Vl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~ 209 (337)
T KOG1580|consen 130 VLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYT 209 (337)
T ss_pred hhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHH
Confidence 9999999999999999999999999877643 223478899999999999999999998887777888899999
Q ss_pred hHHHHHHHHHHHHHhhhccCCccccccccCchhHHHHHHHHHHHHHHHHHHHHhhcccCchhHhHHhhHHHHHHHHhhHh
Q 019191 193 APIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCALAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWL 272 (345)
Q Consensus 193 ~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pv~~~~~s~l 272 (345)
++++.+.+-....+..+. ++......-.+..++-+.+.++++.+.+...+..+...+|.+-+++...+..++++.|++
T Consensus 210 NlwStL~Lg~g~lfTGEl--weF~yF~~RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVl 287 (337)
T KOG1580|consen 210 NLWSTLYLGAGLLFTGEL--WEFFYFVQRHPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVL 287 (337)
T ss_pred HHHHHHHhhhhheehhhH--HHHHHHHHhccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHH
Confidence 999887765443333211 112211122345566777778888888888888899999999999999999999999999
Q ss_pred hcCCcccccchhhHHHHhHHHHHhhhhh
Q 019191 273 LFDSALTFKNISGMILAVVGMVIYSWAV 300 (345)
Q Consensus 273 ~~~e~~s~~~iiG~~lii~G~~l~~~~~ 300 (345)
+++++++.+||+|.+++..|...-....
T Consensus 288 lf~npls~rQwlgtvlVF~aL~~D~~~G 315 (337)
T KOG1580|consen 288 LFNNPLSGRQWLGTVLVFSALTADVVDG 315 (337)
T ss_pred HhcCcCcHHHHHHHHHHHHHhhhHhhcC
Confidence 9999999999999999999988755443
No 24
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.78 E-value=6.7e-17 Score=135.63 Aligned_cols=250 Identities=12% Similarity=0.078 Sum_probs=189.6
Q ss_pred HHHHhhccCCcccchhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHhhhhhhhcccchhHHHHHh
Q 019191 29 ANKQLMSSSGYAFSFATTLTGFHFAVTALVGLVSNATGLSASKHVPLWELLWFSIVANMSIAGMNFSLMLNSVGFYQISK 108 (345)
Q Consensus 29 ~~K~~l~~~~~~~~~P~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~s~~~~l~ 108 (345)
+.|.++.. +. |.-.+++|..++++++..+.|-.+++..+.+|+.+..+|+..+..+.++|.+++.++.+.+..+-
T Consensus 30 ~Ak~LFP~----vG-~~g~t~lRl~~aaLIll~l~RPwr~r~~~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVAiE 104 (292)
T COG5006 30 FAKSLFPL----VG-AAGVTALRLAIAALILLALFRPWRRRLSKPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAVAIE 104 (292)
T ss_pred HHHHHccc----cC-hhhHHHHHHHHHHHHHHHHhhHHHhccChhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhh
Confidence 47777777 78 99999999999999888776533344455577888899999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhccccChhhhhhhhhhhhcceeeeecc---ccccchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCH
Q 019191 109 LSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITD---VKVNAKGFLCACVAVLSTSLQQITIGSLQKKYSIGS 185 (345)
Q Consensus 109 ~~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l~~~~~---~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~ 185 (345)
.+.|+.++.++ .+|.+-.-|+ .+++.|+.+..... .+.|..|..+++.+..+|+.|.+..||.-+ ..+.
T Consensus 105 F~GPL~vA~~~----sRr~~d~vwv--aLAvlGi~lL~p~~~~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~--~~~g 176 (292)
T COG5006 105 FTGPLAVALLS----SRRLRDFVWV--ALAVLGIWLLLPLGQSVWSLDPVGVALALGAGACWALYIVLGQRAGR--AEHG 176 (292)
T ss_pred hccHHHHHHHh----ccchhhHHHH--HHHHHHHHhheeccCCcCcCCHHHHHHHHHHhHHHHHHHHHcchhcc--cCCC
Confidence 99999988765 4555444454 45566665543322 456889999999999999999999998764 3456
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhhhccCCccccccccCchhHHHHHHHHHHHHHHH-HHHHHhhcccCchhHhHHhhHHHH
Q 019191 186 FELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCALAVFCN-VSQYLCIGRFSATSFQVLGHMKTV 264 (345)
Q Consensus 186 ~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~pv 264 (345)
.+.+...+.++++..+++..... .+.-+++..+..-...++++...- .+--.++++.+..++++...++|.
T Consensus 177 ~~g~a~gm~vAaviv~Pig~~~a--------g~~l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa 248 (292)
T COG5006 177 TAGVAVGMLVAALIVLPIGAAQA--------GPALFSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPA 248 (292)
T ss_pred chHHHHHHHHHHHHHhhhhhhhc--------chhhcChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHH
Confidence 66677777777777766654211 111233444444444455555443 333457999999999999999999
Q ss_pred HHHHhhHhhcCCcccccchhhHHHHhHHHHHhhhh
Q 019191 265 CVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWA 299 (345)
Q Consensus 265 ~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~~~ 299 (345)
++.+.|++++||.+|+.|++|++.++.+..-.++.
T Consensus 249 ~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt 283 (292)
T COG5006 249 LAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLT 283 (292)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999988765543
No 25
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.78 E-value=1.8e-17 Score=144.70 Aligned_cols=210 Identities=13% Similarity=0.072 Sum_probs=168.0
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhcccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhhhhhcceeeeeccc----
Q 019191 75 LWELLWFSIVANMSIAGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITDV---- 150 (345)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~al~~~~~s~~~~l~~~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~---- 150 (345)
..++...++++...+.+.+.++++++++++|++.++..++|++++++++|+|.++.||.++.+.++|+.+...++.
T Consensus 17 ~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~~ 96 (244)
T PF04142_consen 17 TLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSSD 96 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccccc
Confidence 3456677888999999999999999999999999999999999999999999999999999999999999654321
Q ss_pred -------------cccchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhhccCCcccc
Q 019191 151 -------------KVNAKGFLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFIT 217 (345)
Q Consensus 151 -------------~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~ 217 (345)
.....|..+.++++++.++..++.||++|+.+.+.+.........+.++.++.....+.....+.-.
T Consensus 97 ~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~ 176 (244)
T PF04142_consen 97 NSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGF 176 (244)
T ss_pred cccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCc
Confidence 1134799999999999999999999999987766666666666666666655544433221111111
Q ss_pred ccccCchhHHHHHHHHHHHHHHHHHHHHhhcccCchhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHH
Q 019191 218 TYKMTSGAILFIFLSCALAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMIL 288 (345)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~l 288 (345)
...|+...|..++..++.|...... +|+.+...-+....+..+++.+.++++|+.++|...++|..+
T Consensus 177 f~G~~~~~~~~i~~~a~gGllva~v----~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~ 243 (244)
T PF04142_consen 177 FHGYSWWVWIVIFLQAIGGLLVAFV----LKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL 243 (244)
T ss_pred hhhcchHHHHHHHHHHHhhHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence 1245566666666666666665544 899999999999999999999999999999999999999865
No 26
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.77 E-value=5.2e-17 Score=138.01 Aligned_cols=271 Identities=16% Similarity=0.153 Sum_probs=200.8
Q ss_pred HHHHHHhhc---cCCcccchhhHHHHHHHHHHHHHHHH---HHhcCCCC-------------CCCCchhHHHHHHHHHHH
Q 019191 27 IMANKQLMS---SSGYAFSFATTLTGFHFAVTALVGLV---SNATGLSA-------------SKHVPLWELLWFSIVANM 87 (345)
Q Consensus 27 ~~~~K~~l~---~~~~~~~~P~~l~~~r~~~~~~~l~~---~~~~~~~~-------------~~~~~~~~~~~~~~~~~~ 87 (345)
++..||.=+ ++..+|+.|+..+..-++--+..+.+ ++++...+ +++.+...+++.++|-..
T Consensus 19 tl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~lfl~Pal~Di~ 98 (372)
T KOG3912|consen 19 TLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVLFLPPALCDIA 98 (372)
T ss_pred HHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcceecChHHHHHh
Confidence 356788733 22345776776655544433333332 22221111 012233446788999999
Q ss_pred HHhhhhhhhcccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhhhhhcceeeeeccc----------cccchhH
Q 019191 88 SIAGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITDV----------KVNAKGF 157 (345)
Q Consensus 88 ~~~~~~~al~~~~~s~~~~l~~~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~----------~~~~~G~ 157 (345)
+..+.|.++.+++++.+|+++....+|+.+++.-+++++++..||+|+.....|++++...|. +.-..|+
T Consensus 99 gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~d~s~iitGd 178 (372)
T KOG3912|consen 99 GSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYTDYSSIITGD 178 (372)
T ss_pred hhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCccccccchhhh
Confidence 999999999999999999999999999999999999999999999999999999998765532 2335799
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhhccCCcccccc------cc-------C-c
Q 019191 158 LCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTY------KM-------T-S 223 (345)
Q Consensus 158 ~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~------~~-------~-~ 223 (345)
.+.+.+-+.-|.+.++.+|..++.+.+|.+...|...++.+++.+....+...+.++..+.. +| . .
T Consensus 179 llIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~~~~e~ 258 (372)
T KOG3912|consen 179 LLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFAALQES 258 (372)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999977776655544332222111110 01 0 1
Q ss_pred hhHHHHHHHH-HH-HHHHHHHHHHhhcccCchhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhhh
Q 019191 224 GAILFIFLSC-AL-AVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSW 298 (345)
Q Consensus 224 ~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~~ 298 (345)
..+ .+...+ .. -.+.|+......|..|+++-.+...++..+..+++..+..|.++..|+.|.++.+.|..+|+-
T Consensus 259 p~l-~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~~ 334 (372)
T KOG3912|consen 259 PSL-AVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYNQ 334 (372)
T ss_pred chh-HHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 222222 22 223566667778999999999999999999999999999999999999999999999999984
No 27
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.75 E-value=7.6e-16 Score=138.73 Aligned_cols=245 Identities=13% Similarity=0.102 Sum_probs=172.3
Q ss_pred HHHHHhhccCCcccchhhHHHHHHHHHHHHHHHHHHh-cCCCCCCCCchhHHHHHHHH----HHHHHhhhhhhhcccchh
Q 019191 28 MANKQLMSSSGYAFSFATTLTGFHFAVTALVGLVSNA-TGLSASKHVPLWELLWFSIV----ANMSIAGMNFSLMLNSVG 102 (345)
Q Consensus 28 ~~~K~~l~~~~~~~~~P~~l~~~r~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~al~~~~~s 102 (345)
+..|..- . .+ |.+.. |..++.+++..... .+.. +.+.++....+++ ...++.+++.+.++++++
T Consensus 18 ~~~k~~~-g----~~-~~~~~--~~~~g~l~~~~~~~~~~~~---~~~~~~~~~~g~l~G~~w~ig~~~~~~ai~~~gva 86 (290)
T TIGR00776 18 LINVKIG-G----GP-YSQTL--GTTFGALILSIAIAIFVLP---EFWALSIFLVGLLSGAFWALGQINQFKSMRYMGVS 86 (290)
T ss_pred HHHhccC-C----CH-HHHHH--HHHHHHHHHHHHHHHHhCC---cccccHHHHHHHHHHHHHHhhhhhHHHHHHHHhHH
Confidence 4456543 3 66 44443 67666665543322 1211 1233444444444 556678888899999999
Q ss_pred HHHHHhh-hhHHHHHHHHHHHhccccChhh----hhhhhhhhhcceeeeecccc-------cc-chhHHHHHHHHHHHHH
Q 019191 103 FYQISKL-SMIPVVCVMEWILHNKHYSKEV----KMAVVVVVIGVGVCTITDVK-------VN-AKGFLCACVAVLSTSL 169 (345)
Q Consensus 103 ~~~~l~~-~~p~~~~~l~~l~~~e~~~~~~----~~~~~l~~~Gv~l~~~~~~~-------~~-~~G~~~~l~a~~~~a~ 169 (345)
.+..+.+ +.|++..+.+.+++|||.++++ +.|++++++|+.+....+.+ .+ ..|.++++.++++|+.
T Consensus 87 ~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~~Gi~~~l~sg~~y~~ 166 (290)
T TIGR00776 87 KTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFKKGILLLLMSTIGYLV 166 (290)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchhhHHHHHHHHHHHHHH
Confidence 9998888 8888999999999999999999 99999999999987654321 23 5799999999999999
Q ss_pred HHHHHHHHhhhcCCCHHHHHHhh---hHHHHHHHHHHHHHhhhccCCccccccccCchhHHHHHHHHHHHHHHHHHHHHh
Q 019191 170 QQITIGSLQKKYSIGSFELLSKT---APIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCALAVFCNVSQYLC 246 (345)
Q Consensus 170 ~~v~~~~~~~~~~~~~~~~~~~~---~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (345)
|.+..|+. +.++....+.+ ...+++...... .+ . . ++.....+.....++.....+...+..
T Consensus 167 ~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~--~~---~----~--~~~~~~~~~~~~~Gi~~~ia~~~y~~~ 231 (290)
T TIGR00776 167 YVVVAKAF----GVDGLSVLLPQAIGMVIGGIIFNLGH--IL---A----K--PLKKYAILLNILPGLMWGIGNFFYLFS 231 (290)
T ss_pred HHHHHHHc----CCCcceehhHHHHHHHHHHHHHHHHH--hc---c----c--chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999974 25666663333 333333222211 00 0 0 111112222333555555556666677
Q ss_pred hc-ccCchhHhHHhhHHHHHHHHhhHhhcCCcccccch----hhHHHHhHHHHHhhh
Q 019191 247 IG-RFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNI----SGMILAVVGMVIYSW 298 (345)
Q Consensus 247 ~~-~~~~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~i----iG~~lii~G~~l~~~ 298 (345)
.+ +.++..+++..+++|+.+.+++++++||+.++.|+ +|.++++.|+.+...
T Consensus 232 ~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 232 AQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 78 99999999999999999999999999999999999 999999999988654
No 28
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.74 E-value=6.9e-19 Score=148.42 Aligned_cols=266 Identities=13% Similarity=0.089 Sum_probs=194.5
Q ss_pred HHHHHHHHHHHHHhhccCCcccchhhHHHHHHHHHHHHHHHHHHh--cCCCCCCCCchhHHHHHHHHHHHHHhhhhhhhc
Q 019191 20 VISSVGIIMANKQLMSSSGYAFSFATTLTGFHFAVTALVGLVSNA--TGLSASKHVPLWELLWFSIVANMSIAGMNFSLM 97 (345)
Q Consensus 20 ~~~s~~~~~~~K~~l~~~~~~~~~P~~l~~~r~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 97 (345)
++.+.+|++..|.+. ++ |..+...|++.-.++...... +...--++-+++.+..-++....+....+||++
T Consensus 47 ~ff~~~~vv~t~~~e------~~-p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~tgvmlmyya~~ 119 (346)
T KOG4510|consen 47 YFFNSCMVVSTKVLE------ND-PMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGFTGVMLMYYALM 119 (346)
T ss_pred HHHhhHHHhhhhhhc------cC-hhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehhhhhhHHHHHHHHHh
Confidence 456666777777553 44 888888886665555443321 111111222333445567888888999999999
Q ss_pred ccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhhhhhcceeeeecc-----c---------cccchhHHHHHHH
Q 019191 98 LNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITD-----V---------KVNAKGFLCACVA 163 (345)
Q Consensus 98 ~~~~s~~~~l~~~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l~~~~~-----~---------~~~~~G~~~~l~a 163 (345)
|++.+.+.++..++|.+|.++++.++|||+++.+.++..+.+.|++++..+. . +.+..|-..++.+
T Consensus 120 ~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~~gt~aai~s 199 (346)
T KOG4510|consen 120 YMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDIPGTVAAISS 199 (346)
T ss_pred hcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccCCchHHHHHh
Confidence 9999999999999999999999999999999999999999999999975431 1 2355788888999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhhccCCccccccccCchhHHHHHHHHHHHHHHHHHH
Q 019191 164 VLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCALAVFCNVSQ 243 (345)
Q Consensus 164 ~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (345)
++.-|--.++.|++-|+ .+......|...++.+..++...... +. ..+.....++++...++.|+..+...
T Consensus 200 ~lf~asvyIilR~iGk~--~h~~msvsyf~~i~lV~s~I~~~~ig-----~~--~lP~cgkdr~l~~~lGvfgfigQIll 270 (346)
T KOG4510|consen 200 VLFGASVYIILRYIGKN--AHAIMSVSYFSLITLVVSLIGCASIG-----AV--QLPHCGKDRWLFVNLGVFGFIGQILL 270 (346)
T ss_pred HhhhhhHHHHHHHhhcc--ccEEEEehHHHHHHHHHHHHHHhhcc-----ce--ecCccccceEEEEEehhhhhHHHHHH
Confidence 99888888999987663 45555555665555554444332221 11 11222334456667778888888777
Q ss_pred HHhhcccCchhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhhhhhh
Q 019191 244 YLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAVE 301 (345)
Q Consensus 244 ~~~~~~~~~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~~~~~ 301 (345)
...+++=.+-..++..+..-+++.++.+++|||.+++.+++|+++++.+.++....|.
T Consensus 271 Tm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~kw 328 (346)
T KOG4510|consen 271 TMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKKW 328 (346)
T ss_pred HHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHHH
Confidence 7777777777778889999999999999999999999999999999988887654433
No 29
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.74 E-value=4.6e-17 Score=143.90 Aligned_cols=224 Identities=15% Similarity=0.063 Sum_probs=174.8
Q ss_pred HHHHHHHHHHH----HHhhhhhhhcccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhhhhhcceeeeeccc--
Q 019191 77 ELLWFSIVANM----SIAGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITDV-- 150 (345)
Q Consensus 77 ~~~~~~~~~~~----~~~~~~~al~~~~~s~~~~l~~~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~-- 150 (345)
+....++++|. .....|.|+.|++++..+++.+++-+||.+++..+..||+++.|.+++.+.++|+++++.+|.
T Consensus 157 ~~ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~ 236 (416)
T KOG2765|consen 157 QTAKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ 236 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence 45566666664 556677799999999999999999999999999999999999999999999999999987743
Q ss_pred ------cccchhHHHHHHHHHHHHHHHHHHHHHhhhc--CCCHHHHHHhhhHHHHHHHHHHHHHhhhccCCccccccccC
Q 019191 151 ------KVNAKGFLCACVAVLSTSLQQITIGSLQKKY--SIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMT 222 (345)
Q Consensus 151 ------~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~ 222 (345)
+....|.++++.++++||.|.++.||...++ ++|...+..+..++..+.+-+...+.+.. +....+.+..
T Consensus 237 ~~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~--~~e~F~lP~~ 314 (416)
T KOG2765|consen 237 NSDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFF--GEERFELPSS 314 (416)
T ss_pred cccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHh--ccCcccCCCC
Confidence 3346899999999999999999999977554 55666666666555555554444444433 1111111222
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcccCchhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhhhhhhH
Q 019191 223 SGAILFIFLSCALAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAVEA 302 (345)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~~~~~~ 302 (345)
...-.++..+++..+..-+.+.++.-.++|..+.+-..++.+.+++...++-+.++|+.+++|...+..|.+..++..+.
T Consensus 315 ~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~ 394 (416)
T KOG2765|consen 315 TQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSEN 394 (416)
T ss_pred ceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccccc
Confidence 22223444555666677777778888999999999999999999999999889999999999999999999998876543
No 30
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.73 E-value=8.3e-17 Score=136.14 Aligned_cols=270 Identities=17% Similarity=0.141 Sum_probs=216.6
Q ss_pred HHHHHhhccCCcccc-hhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHhhhhhhhcccchhHHHH
Q 019191 28 MANKQLMSSSGYAFS-FATTLTGFHFAVTALVGLVSNATGLSASKHVPLWELLWFSIVANMSIAGMNFSLMLNSVGFYQI 106 (345)
Q Consensus 28 ~~~K~~l~~~~~~~~-~P~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~s~~~~ 106 (345)
....++.+. .||. +-+.++..|+++-..+.++-.+.-..+++..+||....++.+......+.|-++.|++-++--+
T Consensus 60 y~qElif~~--~gfkp~GWylTlvQf~~Ysg~glie~~~~~~k~r~iP~rtY~~la~~t~gtmGLsn~SlgYLNYPtQvi 137 (367)
T KOG1582|consen 60 YLQELIFNV--EGFKPFGWYLTLVQFLVYSGFGLIELQLIQTKRRVIPWRTYVILAFLTVGTMGLSNGSLGYLNYPTQVI 137 (367)
T ss_pred HHHHHHhcc--ccCcccchHHHHHHHHHHHhhhheEEEeecccceecchhHhhhhHhhhhhccccCcCccccccCcHHHH
Confidence 457777777 6665 5789999999887655554433323345567889888999998899999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHhccccChhhhhhhhhhhhcceeeeeccc----cccchhHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 019191 107 SKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITDV----KVNAKGFLCACVAVLSTSLQQITIGSLQKKYS 182 (345)
Q Consensus 107 l~~~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~----~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~ 182 (345)
.+++..+-+++.+.++-++|+.+....+..+..+|++..+..|. ++|..|+.+.-+|-++.|.-...+++.++.++
T Consensus 138 FKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~ 217 (367)
T KOG1582|consen 138 FKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSPNFNLIGVMMISGALLADAVIGNVQEKAMKMNP 217 (367)
T ss_pred HHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCC
Confidence 99999999999999999999999999999999999999887664 67889999999999999999999999998888
Q ss_pred CCHHHHHHhhhHHHHHHHHHHHHHhhhccCCccccccccCchhHHHHHHHHHHHHHHHHHHHHhhcccCchhHhHHhhHH
Q 019191 183 IGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCALAVFCNVSQYLCIGRFSATSFQVLGHMK 262 (345)
Q Consensus 183 ~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 262 (345)
-++.++++|...++.++++.......+... .+....+.+........+-.+.+++........++-.++..++.+++.+
T Consensus 218 ~ss~EmvfySy~iG~vflf~~mvlTge~f~-a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaR 296 (367)
T KOG1582|consen 218 ASSSEMVFYSYGIGFVFLFAPMVLTGELFS-AWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTAR 296 (367)
T ss_pred CCcceEEEeeecccHHHHHHHHHhcccchh-hhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhH
Confidence 888999999988888877654433321111 1111112233344455555666666655555678999999999999999
Q ss_pred HHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhhhhh
Q 019191 263 TVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAV 300 (345)
Q Consensus 263 pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~~~~ 300 (345)
.-.++++|+++|..++|....-|..++..|+++-.+.+
T Consensus 297 KavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 297 KAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred hHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 99999999999999999999999999999999966654
No 31
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.73 E-value=3.8e-17 Score=138.67 Aligned_cols=258 Identities=17% Similarity=0.227 Sum_probs=201.9
Q ss_pred hhHHHHHHHHHHHHHHHHHH-hcCCCCCCCCchhHHHHHHHHHHHHHhhhhhhhcc-cchhHHHHHhhhhHHHHHHHHHH
Q 019191 44 ATTLTGFHFAVTALVGLVSN-ATGLSASKHVPLWELLWFSIVANMSIAGMNFSLML-NSVGFYQISKLSMIPVVCVMEWI 121 (345)
Q Consensus 44 P~~l~~~r~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~~~s~~~~l~~~~p~~~~~l~~l 121 (345)
-.++++.|+++-+.-.++.. +... .+++.+.+.....-..+......+|+++++ ++.+..-+.++.+++.+++++++
T Consensus 33 gNLITFaqFlFia~eGlif~skf~~-~k~kiplk~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~i 111 (330)
T KOG1583|consen 33 GNLITFAQFLFIATEGLIFTSKFFT-VKPKIPLKDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWI 111 (330)
T ss_pred eeehHHHHHHHHHHhceeeeccccc-cCCCCchhhhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHH
Confidence 35788999987766544432 2222 236778888888877787888899999999 99999999999999999999999
Q ss_pred HhccccChhhhhhhhhhhhcceeeeeccc-----------------ccc--chhHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 019191 122 LHNKHYSKEVKMAVVVVVIGVGVCTITDV-----------------KVN--AKGFLCACVAVLSTSLQQITIGSLQKKYS 182 (345)
Q Consensus 122 ~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~-----------------~~~--~~G~~~~l~a~~~~a~~~v~~~~~~~~~~ 182 (345)
+.|+|++..|+.++.+..+|+++++..+. +.. ..|..+...+.+..|...++++...|+++
T Consensus 112 l~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyG 191 (330)
T KOG1583|consen 112 LLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYG 191 (330)
T ss_pred hccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999765321 011 15889999999999999999999999999
Q ss_pred CCHHHHHHhhhHHHHHHHHHHH-HHhhhcc---CCcc--cccccc-CchhHHHHHHHHHHHHHHHHHHHHhhcccCchhH
Q 019191 183 IGSFELLSKTAPIQAVSLLVLG-PFVDYYL---NGKF--ITTYKM-TSGAILFIFLSCALAVFCNVSQYLCIGRFSATSF 255 (345)
Q Consensus 183 ~~~~~~~~~~~~~~~v~l~~~~-~~~~~~~---~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (345)
.++-+.++|+...+.-.++... .+...+. ..+. ...... -+..|..++..++..++.--..|.+-.+.++.+.
T Consensus 192 Kh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTV 271 (330)
T KOG1583|consen 192 KHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLFNVLTQYFCIKGVYILTTETSSLTV 271 (330)
T ss_pred CChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHHHHHHHHHHHHhhhhhhceecceEE
Confidence 9999999999865443222211 1111110 0110 001111 2456678888999988888878888899999999
Q ss_pred hHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhhhhhhH
Q 019191 256 QVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAVEA 302 (345)
Q Consensus 256 ~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~~~~~~ 302 (345)
+++-+++..+..++|...|++++|+.+|+|..++..|..+|.-...+
T Consensus 272 TlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~~~ 318 (330)
T KOG1583|consen 272 TLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVWNH 318 (330)
T ss_pred EEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999755443
No 32
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.70 E-value=3e-16 Score=128.10 Aligned_cols=143 Identities=30% Similarity=0.485 Sum_probs=125.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhh-----cCCCHHHHHHhhhHHHHHHHHHHHHHhhhccCCccccccc---c--Cchh
Q 019191 156 GFLCACVAVLSTSLQQITIGSLQKK-----YSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYK---M--TSGA 225 (345)
Q Consensus 156 G~~~~l~a~~~~a~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~---~--~~~~ 225 (345)
|+++++.++++.|+++++.|++.++ .+.++.+++.|+++.+.+.+++..++.|+........... . +...
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 7899999999999999999998877 5899999999999999999999998887653222221111 1 3356
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCchhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhhh
Q 019191 226 ILFIFLSCALAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSW 298 (345)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~~ 298 (345)
+..++.+++.+++.++..+.+++++||++.++.+.+|.+..++.|+++++|++|..+++|.++.+.|+.+|++
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 6788899999999999999999999999999999999999999999999999999999999999999999975
No 33
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.67 E-value=5.9e-17 Score=135.95 Aligned_cols=263 Identities=16% Similarity=0.136 Sum_probs=198.7
Q ss_pred HHHHHHHHHHhhccCCcccchhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHhhhhhhhcccchh
Q 019191 23 SVGIIMANKQLMSSSGYAFSFATTLTGFHFAVTALVGLVSNATGLSASKHVPLWELLWFSIVANMSIAGMNFSLMLNSVG 102 (345)
Q Consensus 23 s~~~~~~~K~~l~~~~~~~~~P~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~s 102 (345)
+.+..+.+.++-+. +.+.|...++..+..-+++--.+...|. +.-+..|++.+.+++.-.-++++-..|.||++..
T Consensus 30 ~t~~a~tss~la~k---~iN~Pt~QtFl~Y~LLalVY~~~~~fR~-~~~~~~~~hYilla~~DVEaNy~vV~AyQyTsmt 105 (336)
T KOG2766|consen 30 ITSTAFTSSELARK---GINAPTSQTFLNYVLLALVYGPIMLFRR-KYIKAKWRHYILLAFVDVEANYFVVKAYQYTSMT 105 (336)
T ss_pred HHcchhhhHHHHhc---cCCCccHHHHHHHHHHHHHHhhHHHhhh-HHHHHHHHHhhheeEEeecccEEEeeehhhcchH
Confidence 33445666776655 4666888888888665554332222221 3334456776666666666666677799999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhhhhhcceeeeeccc--------cccchhHHHHHHHHHHHHHHHHHH
Q 019191 103 FYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITDV--------KVNAKGFLCACVAVLSTSLQQITI 174 (345)
Q Consensus 103 ~~~~l~~~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~--------~~~~~G~~~~l~a~~~~a~~~v~~ 174 (345)
..+.+..-..+.+.+++|+++|.|+++.|+.|++++.+|+.++.+.|. +....|+++.++++-+||..|+..
T Consensus 106 Si~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GATlYaVSNv~E 185 (336)
T KOG2766|consen 106 SIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGATLYAVSNVSE 185 (336)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEecceeeeeccccH
Confidence 999999999999999999999999999999999999999999887662 345689999999999999999999
Q ss_pred HHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhhccCCccccccccCchhHHHHHHHHHHHHHHHHHHHHhhcccCchh
Q 019191 175 GSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCALAVFCNVSQYLCIGRFSATS 254 (345)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (345)
+.+.| +.+..+++....++++++..+- ++.|. ......+|+......+. ..++-++.+...-..+|..|++.
T Consensus 186 Eflvk--n~d~~elm~~lgLfGaIIsaIQ-~i~~~----~~~~tl~w~~~i~~yl~-f~L~MFllYsl~pil~k~~~aT~ 257 (336)
T KOG2766|consen 186 EFLVK--NADRVELMGFLGLFGAIISAIQ-FIFER----HHVSTLHWDSAIFLYLR-FALTMFLLYSLAPILIKTNSATM 257 (336)
T ss_pred HHHHh--cCcHHHHHHHHHHHHHHHHHHH-Hhhhc----cceeeEeehHHHHHHHH-HHHHHHHHHHhhHHheecCCceE
Confidence 99888 5678888888888888877765 44443 24445566543332332 44444444444556789999999
Q ss_pred HhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhhhh
Q 019191 255 FQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWA 299 (345)
Q Consensus 255 ~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~~~ 299 (345)
.++-.......+++. ..||-+.+|..++..+.+..|.++|..+
T Consensus 258 ~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~r 300 (336)
T KOG2766|consen 258 FNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTR 300 (336)
T ss_pred EEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeecc
Confidence 999888888888887 5688889999999999999999999543
No 34
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=99.24 E-value=2.9e-11 Score=104.89 Aligned_cols=189 Identities=13% Similarity=0.115 Sum_probs=120.4
Q ss_pred chhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhhhhhcceee--------------------eeccc-------cc
Q 019191 100 SVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVC--------------------TITDV-------KV 152 (345)
Q Consensus 100 ~~s~~~~l~~~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l~--------------------~~~~~-------~~ 152 (345)
+++.....++..++++++..+.+.++|++..|+++.++...|+... ..++. ..
T Consensus 3 svPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g~ 82 (222)
T TIGR00803 3 SVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFGN 82 (222)
T ss_pred cccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCcccccccc
Confidence 4555666777777777777777777777777777777777776642 11111 12
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhhccCCccccc----cccCchhHHH
Q 019191 153 NAKGFLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITT----YKMTSGAILF 228 (345)
Q Consensus 153 ~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 228 (345)
.+.|....+.+..+.++..+++++..|+++.............+.+... .. +.....+.... .+++...+..
T Consensus 83 ~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (222)
T TIGR00803 83 PVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTF-SV---LLWSDGTLISNFGFFIGYPTAVWIV 158 (222)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHH-HH---HhhcccchhhccCcccCCchHHHHH
Confidence 3467777888888889999999987664433222222222222222111 11 11111111111 1233334444
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCchhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHh
Q 019191 229 IFLSCALAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIY 296 (345)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~ 296 (345)
++...+.+. +..+.+++.+++..++...++++++.++|++++||+++..+++|..+++.|+.+|
T Consensus 159 ~~~~a~~~~----~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 159 GLLNVGGGL----CIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred HHHHHhcCc----eeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 433333333 3456799999999999999999999999999999999999999999999998765
No 35
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.20 E-value=1.8e-10 Score=87.11 Aligned_cols=135 Identities=16% Similarity=0.180 Sum_probs=106.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhhccCCccccccccCchhHHHHHHHHHH
Q 019191 156 GFLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCAL 235 (345)
Q Consensus 156 G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (345)
-.++++++++.+++..+..|--.+ +.||...+..-+....+++........ +.....+.+...|..++.+++.
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~--~vdp~~At~IRtiVi~~~l~~v~~~~g-----~~~~~~~~~~k~~lflilSGla 76 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLE--GVDPDFATTIRTIVILIFLLIVLLVTG-----NWQAGGEIGPKSWLFLILSGLA 76 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHHHHHHHHhcC-----ceecccccCcceehhhhHHHHH
Confidence 357899999999999999997666 466766666665555555554443332 2222222344455788889999
Q ss_pred HHHHHHHHHHhhcccCchhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhh
Q 019191 236 AVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYS 297 (345)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~ 297 (345)
+...++++|++++.-.++.....+-..|++++++|+++++|++|..+++|.++|.+|..+..
T Consensus 77 ~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 77 GGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 99999999999999999999999999999999999999999999999999999999987643
No 36
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.18 E-value=6.6e-11 Score=92.70 Aligned_cols=113 Identities=14% Similarity=0.224 Sum_probs=90.7
Q ss_pred HHHHHHhhccCCcccchhhHHHHHHHHHHHHHHHHHH--hcCC--CCCCCCchhHHHHHHHH-HHHHHhhhhhhhcccch
Q 019191 27 IMANKQLMSSSGYAFSFATTLTGFHFAVTALVGLVSN--ATGL--SASKHVPLWELLWFSIV-ANMSIAGMNFSLMLNSV 101 (345)
Q Consensus 27 ~~~~K~~l~~~~~~~~~P~~l~~~r~~~~~~~l~~~~--~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~al~~~~~ 101 (345)
.+.+|...++ +| |....++|+..+.+ +.... ..+. .+.++.++......+++ ...+..+.++++++.++
T Consensus 7 ~~~~k~~~~~----~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 80 (126)
T PF00892_consen 7 SVFSKKLLKK----IS-PLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYISA 80 (126)
T ss_pred HHHHHHHhcc----CC-HHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhcch
Confidence 4679999998 99 99999999999986 33322 2111 12222333445555655 57788899999999999
Q ss_pred hHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhhhhhcceee
Q 019191 102 GFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVC 145 (345)
Q Consensus 102 s~~~~l~~~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l~ 145 (345)
+.++++.++.|+++.+++++++|||+++.++.|++++++|+.+.
T Consensus 81 ~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 81 SIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999765
No 37
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.11 E-value=5.5e-10 Score=87.41 Aligned_cols=124 Identities=21% Similarity=0.339 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhhccCCccccccccCchhHHHHH-HHHHHHHHHHHHH
Q 019191 165 LSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIF-LSCALAVFCNVSQ 243 (345)
Q Consensus 165 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 243 (345)
++||.+.+..|+..++ .++.....+....+.+ +++.....+... ...++...+.... .+.+.....+...
T Consensus 1 ~~~a~~~~~~k~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKK--ISPLSITFWRFLIAGI-LLILLLILGRKP------FKNLSPRQWLWLLFLGLLGTALAYLLY 71 (126)
T ss_pred ceeeeHHHHHHHHhcc--CCHHHHHHHHHHHHHH-HHHHHHhhcccc------ccCCChhhhhhhhHhhccceehHHHHH
Confidence 4688899999998874 7899999999888887 555555543221 1122222223333 3334456677777
Q ss_pred HHhhcccCchhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhh
Q 019191 244 YLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYS 297 (345)
Q Consensus 244 ~~~~~~~~~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~ 297 (345)
++++++.++...+...+++|+++.++++++++|++++.+++|.++++.|+.+.+
T Consensus 72 ~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 72 FYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999999998754
No 38
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.05 E-value=3.6e-09 Score=80.12 Aligned_cols=116 Identities=13% Similarity=0.083 Sum_probs=94.8
Q ss_pred HHHHHHhhccCCcccchhhHHHHHHHHHHHHHHHHHHh-cCC-CCCCCCchhH---HHHHHHHHHHHHhhhhhhhcccch
Q 019191 27 IMANKQLMSSSGYAFSFATTLTGFHFAVTALVGLVSNA-TGL-SASKHVPLWE---LLWFSIVANMSIAGMNFSLMLNSV 101 (345)
Q Consensus 27 ~~~~K~~l~~~~~~~~~P~~l~~~r~~~~~~~l~~~~~-~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~al~~~~~ 101 (345)
.++.|..+++ .+ |.+.+..|..+..+.+..... .+. ......+.|. +...|+....+..+++++++.-.+
T Consensus 19 ~iF~KIGl~~----vd-p~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl~Yf~ALk~G~a 93 (140)
T COG2510 19 PIFAKIGLEG----VD-PDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWLLYFRALKKGKA 93 (140)
T ss_pred HHHHHHhccc----cC-ccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHHHHHHHHhcCCc
Confidence 4779999998 99 999999999988776665433 232 2232233333 444566677889999999999999
Q ss_pred hHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhhhhhcceeeee
Q 019191 102 GFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTI 147 (345)
Q Consensus 102 s~~~~l~~~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l~~~ 147 (345)
|.+.-+..++|++++++++++++||+|..+|+|++++.+|+++++.
T Consensus 94 s~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 94 SRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred ceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 9999999999999999999999999999999999999999988753
No 39
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.01 E-value=1.4e-09 Score=83.88 Aligned_cols=102 Identities=14% Similarity=0.228 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHh--cCCCC----CCCCchhHHHHHHHHHH-HHHhhhhhhhcccchhHHHHHhhhhHHHHHHHHHH
Q 019191 49 GFHFAVTALVGLVSNA--TGLSA----SKHVPLWELLWFSIVAN-MSIAGMNFSLMLNSVGFYQISKLSMIPVVCVMEWI 121 (345)
Q Consensus 49 ~~r~~~~~~~l~~~~~--~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~al~~~~~s~~~~l~~~~p~~~~~l~~l 121 (345)
++|+..+.+.+..+.. .+.++ .++.++..+...+++.. .+..+.++|+++.+ +.+..+.+++|+++.+++++
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 5678877776554322 22111 12233444555566654 78888999999999 58999999999999999999
Q ss_pred HhccccChhhhhhhhhhhhcceeeeecccc
Q 019191 122 LHNKHYSKEVKMAVVVVVIGVGVCTITDVK 151 (345)
Q Consensus 122 ~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~~ 151 (345)
++|||+++.++.+++++++|++++..+|.+
T Consensus 81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 81 FFKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 999999999999999999999998877754
No 40
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=98.99 E-value=2.5e-09 Score=87.05 Aligned_cols=219 Identities=10% Similarity=0.072 Sum_probs=147.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhcccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhhhhhcceeeeeccc--cccc
Q 019191 77 ELLWFSIVANMSIAGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITDV--KVNA 154 (345)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~al~~~~~s~~~~l~~~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~--~~~~ 154 (345)
+..|.+++-....+.+..+++.++++.++.+.+++-.|+.+++++.+++|+.-.++++.++++.|++++.+.|. ..++
T Consensus 55 ~taPF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a~e~ 134 (290)
T KOG4314|consen 55 RTAPFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHADEI 134 (290)
T ss_pred eecceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhhhhh
Confidence 34455666666677777799999999999999999999999999999999999999999999999999987764 4578
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHH--HHhhhccCC-ccccccccCchhHHHHHH
Q 019191 155 KGFLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLG--PFVDYYLNG-KFITTYKMTSGAILFIFL 231 (345)
Q Consensus 155 ~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 231 (345)
.|...+++++...|+|.+..|+.....+... ...+.+..+..-+...+ ++.-.. ++ +..+++...+ |..++.
T Consensus 135 iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gd--aa~FmS~LGF~NL~~~~~~~lIL~~-T~VE~~qsFA~~P--WG~l~G 209 (290)
T KOG4314|consen 135 IGIACAVGSAFMAALYKVLFKMFIGNANFGD--AAHFMSCLGFFNLCFISFPALILAF-TGVEHLQSFAAAP--WGCLCG 209 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccCcchh--HHHHHHHHHHHHHHHHhhhHHHHHH-hchHHHHHHhhCC--chhhhh
Confidence 9999999999999999999998775433322 22222222222221111 000000 11 1112121111 123344
Q ss_pred HHHHHHHHHHHHHHhhcccCchhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhhhhh
Q 019191 232 SCALAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAV 300 (345)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~~~~ 300 (345)
.+.++...|+.....+.-..|...++-.....+-......++-+-..+.....|..++++|..+.-...
T Consensus 210 ~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~ 278 (290)
T KOG4314|consen 210 AAGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPE 278 (290)
T ss_pred HHHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheeccc
Confidence 444444555555555566666666655555555556666665555688899999999999999876543
No 41
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.93 E-value=2e-07 Score=81.49 Aligned_cols=204 Identities=15% Similarity=0.157 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHHhhhhhhhcccchhHHHH-HhhhhHHHHHHHHHHHhccccChhhhh----hhhhhhhcceeeeeccccc
Q 019191 78 LLWFSIVANMSIAGMNFSLMLNSVGFYQI-SKLSMIPVVCVMEWILHNKHYSKEVKM----AVVVVVIGVGVCTITDVKV 152 (345)
Q Consensus 78 ~~~~~~~~~~~~~~~~~al~~~~~s~~~~-l~~~~p~~~~~l~~l~~~e~~~~~~~~----~~~l~~~Gv~l~~~~~~~~ 152 (345)
-+..|++...+...++.|++++++|.+-= -...+-+.+.+.++++++|--+..+++ ++++.++|+.+.+..|.+.
T Consensus 48 ~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~ 127 (269)
T PF06800_consen 48 AFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKS 127 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccc
Confidence 34567778889999999999999887653 345677779999999999977666644 7889999999987765321
Q ss_pred --------cchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhhccCCccccccccCch
Q 019191 153 --------NAKGFLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSG 224 (345)
Q Consensus 153 --------~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~ 224 (345)
...|....+++++.|..|.+..|.. +.+++....=++.-..+..+++.... .......
T Consensus 128 ~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~----~~~~~~~~lPqaiGm~i~a~i~~~~~----~~~~~~k------ 193 (269)
T PF06800_consen 128 DKSSSKSNMKKGILALLISTIGYWIYSVIPKAF----HVSGWSAFLPQAIGMLIGAFIFNLFS----KKPFFEK------ 193 (269)
T ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHHHhc----CCChhHhHHHHHHHHHHHHHHHhhcc----ccccccc------
Confidence 2359999999999999999997652 46677766544322222112211111 0011111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccCchhHhHHhhHHHHHHHHhhHhhcCCcccccc----hhhHHHHhHHHHH
Q 019191 225 AILFIFLSCALAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKN----ISGMILAVVGMVI 295 (345)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~----iiG~~lii~G~~l 295 (345)
..+.-+.++++....|+..+...++.+....-.++.+..+++.+.|.++++|+-+..+ ++|.++++.|..+
T Consensus 194 ~~~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 194 KSWKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred chHHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 1124455666666777777788899999999999999999999999999999988664 4677878777654
No 42
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.79 E-value=1.6e-07 Score=85.09 Aligned_cols=141 Identities=14% Similarity=0.149 Sum_probs=105.4
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhhccCCccccccccCchhHHHHH
Q 019191 151 KVNAKGFLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIF 230 (345)
Q Consensus 151 ~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (345)
+....|.++.+.++++|+...+..|.. . +.+|.+...+...++.+.+++......+. ........+...+....
T Consensus 4 ~~~~~g~~~~l~a~~~wg~~~~~~k~~-~--~~~~~~~~~~R~~~a~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 77 (296)
T PRK15430 4 KQTRQGVLLALAAYFIWGIAPAYFKLI-Y--YVPADEILTHRVIWSFFFMVVLMSICRQW---SYLKTLIQTPQKIFMLA 77 (296)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHh-c--CCCHHHHHHHHHHHHHHHHHHHHHHHccH---HHHHHHHcCHHHHHHHH
Confidence 344679999999999999999999764 3 57899999999888877665543222110 00000000112222333
Q ss_pred HHHHHHHHHHHHHHHhhcccCchhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhh
Q 019191 231 LSCALAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYS 297 (345)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~ 297 (345)
.+++.....+.+.++.+++.++..+++..+..|++..++++++++|+++..+++|.++.++|+.+..
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 78 VSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 4555555667777889999999999999999999999999999999999999999999999998764
No 43
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.76 E-value=1.9e-07 Score=82.77 Aligned_cols=139 Identities=13% Similarity=0.115 Sum_probs=103.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhhccC-CccccccccCchhHHHHHHHH
Q 019191 155 KGFLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLN-GKFITTYKMTSGAILFIFLSC 233 (345)
Q Consensus 155 ~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 233 (345)
.|..+.++++++|+...+..|.. . +.++.+..++-..++.+.+.+.......... .+....... ...+......+
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~~-~--~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g 77 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKLL-K--PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQK-RPLILSLLLCG 77 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHh-c--cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCccc-chHHHHHHHHH
Confidence 48899999999999999999973 3 4899999999998887776554433211000 000100001 11223455555
Q ss_pred HHHHHHHHHHHHhhcccCchhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhh
Q 019191 234 ALAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYS 297 (345)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~ 297 (345)
++....+.+.+..++++++..+++..+..|+++.++++++++|+++..+++|..+.++|+.+..
T Consensus 78 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 78 LLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred HHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 5556667777788999999999999999999999999999999999999999999999988653
No 44
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.68 E-value=3.7e-07 Score=82.12 Aligned_cols=133 Identities=12% Similarity=0.072 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhhccCCccccccccCchhHHHHHHHHHHH
Q 019191 157 FLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCALA 236 (345)
Q Consensus 157 ~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (345)
+.+.+.+++++|.+.+..|+..++ .++. ..+....+.+.+.+...... ...... ..+...+.....+++..
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~--~~~~--~~~~~~~~~~~l~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~ 73 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADK--EPDF--LWWALLAHSVLLTPYGLWYL---AQVGWS--RLPATFWLLLAISAVAN 73 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCc--hhHH--HHHHHHHHHHHHHHHHHHhc---ccCCCC--CcchhhHHHHHHHHHHH
Confidence 578899999999999999976653 2232 34444444444444332210 000110 01112233555666667
Q ss_pred HHHHHHHHHhhcccCchhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhhh
Q 019191 237 VFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSW 298 (345)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~~ 298 (345)
...+...++..++.++...+++.+..|+++.++++++++|+++..+++|..+++.|+.+...
T Consensus 74 ~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 74 MVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL 135 (281)
T ss_pred HHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 77777788899999999999999999999999999999999999999999999999987653
No 45
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.59 E-value=2.3e-06 Score=75.93 Aligned_cols=118 Identities=15% Similarity=0.076 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHhhccCCcccchhhHHHHHHHHHHHHHHHHHHhcCCCCCC--CCchhHHHHHHHH-HHHHHhhhhhhhcc
Q 019191 22 SSVGIIMANKQLMSSSGYAFSFATTLTGFHFAVTALVGLVSNATGLSASK--HVPLWELLWFSIV-ANMSIAGMNFSLML 98 (345)
Q Consensus 22 ~s~~~~~~~K~~l~~~~~~~~~P~~l~~~r~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~al~~ 98 (345)
+.....+..|...++ .+.+ +.....+|+.++.+++.........+.. ..++..+...+++ ...+..+.++++++
T Consensus 139 ~~a~~~~~~k~~~~~--~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 215 (260)
T TIGR00950 139 SFALGTVLYKRLVKK--EGPE-LLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALAYFLWNKGLTL 215 (260)
T ss_pred HHHHHHHHHhHHhhc--CCch-HHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333445668887776 3333 4456667888887766654332211111 1122234445555 45678889999999
Q ss_pred cchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhhhhhcc
Q 019191 99 NSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGV 142 (345)
Q Consensus 99 ~~~s~~~~l~~~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv 142 (345)
.+++.++++.++.|++++++++++++|+++..++.|.++.+.|+
T Consensus 216 ~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 216 VDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999986
No 46
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.50 E-value=5.3e-07 Score=81.33 Aligned_cols=216 Identities=12% Similarity=0.167 Sum_probs=122.0
Q ss_pred HHHHHHH-HHHHHhhhhhhhcccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhhhhhcceeeeeccc-c---c
Q 019191 78 LLWFSIV-ANMSIAGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITDV-K---V 152 (345)
Q Consensus 78 ~~~~~~~-~~~~~~~~~~al~~~~~s~~~~l~~~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~-~---~ 152 (345)
.++.|+. +.++..+...|+.+.|.+..+-+.+..-++.++++..++|||+++..+.|+++++.|..++....+ + .
T Consensus 52 ~W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~ 131 (300)
T PF05653_consen 52 LWWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIH 131 (300)
T ss_pred HHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcC
Confidence 3444444 566778888899999999999999999999999999999999999999999999999987543221 1 0
Q ss_pred cc---------hh---HHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHH---HHHHhhhccCCcccc
Q 019191 153 NA---------KG---FLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLV---LGPFVDYYLNGKFIT 217 (345)
Q Consensus 153 ~~---------~G---~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~---~~~~~~~~~~~~~~~ 217 (345)
+. .+ +...... +...+.....+|.-+ .+........+.+++...+. ..........++.
T Consensus 132 t~~~l~~~~~~~~fl~y~~~~~~-~~~~L~~~~~~r~g~---~~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~~-- 205 (300)
T PF05653_consen 132 TLDELIALLSQPGFLVYFILVLV-LILILIFFIKPRYGR---RNILVYISICSLIGSFTVLSAKAISILIKLTFSGDN-- 205 (300)
T ss_pred CHHHHHHHhcCcceehhHHHHHH-HHHHHHHhhcchhcc---cceEEEEEEeccccchhhhHHHHHHHHHHHHhcCch--
Confidence 00 12 1111111 111111111111111 11110011111112211111 0111111111111
Q ss_pred ccccCchhHHHHHHHHHHHHHHHHHHHHhhcccCchhHhHHhhH-HHHHHHHhhHhhcCCc--ccc----cchhhHHHHh
Q 019191 218 TYKMTSGAILFIFLSCALAVFCNVSQYLCIGRFSATSFQVLGHM-KTVCVLTLGWLLFDSA--LTF----KNISGMILAV 290 (345)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~pv~~~~~s~l~~~e~--~s~----~~iiG~~lii 290 (345)
.+ .++..|.+++....+........++++++.+++....+.+. -...+++-|.++++|. .++ ....|..+++
T Consensus 206 ~f-~~~~~y~l~~~~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii 284 (300)
T PF05653_consen 206 QF-TYPLTYLLLLVLVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIII 284 (300)
T ss_pred hh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH
Confidence 11 12233444444455555555666778888887766555444 4556677788889975 555 3456778888
Q ss_pred HHHHHhhhhh
Q 019191 291 VGMVIYSWAV 300 (345)
Q Consensus 291 ~G~~l~~~~~ 300 (345)
.|+.+.+..+
T Consensus 285 ~GV~lL~~~~ 294 (300)
T PF05653_consen 285 IGVFLLSSSK 294 (300)
T ss_pred HhhheeeccC
Confidence 8998876543
No 47
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.49 E-value=4.1e-06 Score=77.62 Aligned_cols=139 Identities=14% Similarity=0.147 Sum_probs=105.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhhccCCccccccccCchhHHHHHHHH
Q 019191 154 AKGFLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSC 233 (345)
Q Consensus 154 ~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (345)
..-+...+..-++|+.+.++.|...+. +.++.....+-..++++.+++.....+... ... ..+...+..+...+
T Consensus 12 ~~~~~~~~~~q~~~~~~~~~~k~a~~~-G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~---~~~--~~~~~~~~~l~l~g 85 (358)
T PLN00411 12 AVFLTAMLATETSVVGISTLFKVATSK-GLNIYPFLGYSYLLASLLLLPSLFFTNRSR---SLP--PLSVSILSKIGLLG 85 (358)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHC-CCCccHHHHHHHHHHHHHHHHHHHHHHHhc---ccC--cchHHHHHHHHHHH
Confidence 355677788889999999999988754 789999999988888877776655443210 011 01122233444455
Q ss_pred HHHHHHHHHHHHhhcccCchhHhHHhhHHHHHHHHhhHhh------cCCcccccchhhHHHHhHHHHHhhh
Q 019191 234 ALAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLL------FDSALTFKNISGMILAVVGMVIYSW 298 (345)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pv~~~~~s~l~------~~e~~s~~~iiG~~lii~G~~l~~~ 298 (345)
++++..+...+..++++++..+++..+..|+++.++++++ ++|+++..+++|.++.++|+.+...
T Consensus 86 ~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~ 156 (358)
T PLN00411 86 FLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIF 156 (358)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 5555555567788999999999999999999999999999 6999999999999999999987654
No 48
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.37 E-value=1.1e-05 Score=63.33 Aligned_cols=120 Identities=15% Similarity=0.156 Sum_probs=80.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhhccCCccccccccCchhHHHHHHHHH
Q 019191 155 KGFLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCA 234 (345)
Q Consensus 155 ~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (345)
.|+++.+.+.++.+..+++.|+-.++.+..+.... .. .... .. .++. ..+..+.+
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~-------~~-~~~~-~~--------------~~p~--~~i~lgl~ 56 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWD-------FI-AALL-AF--------------GLAL--RAVLLGLA 56 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhH-------HH-HHHH-HH--------------hccH--HHHHHHHH
Confidence 47889999999999999999987665432111110 00 0000 00 0010 02222333
Q ss_pred HHHHHHHHHHHhhcccCchhHhHHhhHHHHHHHHhhHh--hcCCcccccchhhHHHHhHHHHHhhhh
Q 019191 235 LAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWL--LFDSALTFKNISGMILAVVGMVIYSWA 299 (345)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~pv~~~~~s~l--~~~e~~s~~~iiG~~lii~G~~l~~~~ 299 (345)
+.....+....++++.+...+..+....++...+.++. ++||++|+.+++|.+++++|+.+.+..
T Consensus 57 ~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~ 123 (129)
T PRK02971 57 GYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLP 123 (129)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Confidence 33334444556799999999999888888888888875 899999999999999999999997653
No 49
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.35 E-value=5.6e-06 Score=63.25 Aligned_cols=63 Identities=13% Similarity=-0.004 Sum_probs=57.8
Q ss_pred HHHHHHhhhhhhhcccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhhhhhcceeee
Q 019191 84 VANMSIAGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCT 146 (345)
Q Consensus 84 ~~~~~~~~~~~al~~~~~s~~~~l~~~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l~~ 146 (345)
++.....+...+++.+|.+.+..+.++.++++.+++++++|||+++.|+.|++++++|++++.
T Consensus 46 ~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 46 CLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 356677788889999999999999999999999999999999999999999999999997754
No 50
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.25 E-value=2.4e-05 Score=70.84 Aligned_cols=117 Identities=10% Similarity=-0.033 Sum_probs=81.5
Q ss_pred HHHHHHHHHhhccCCcccchhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhH---HHHHHHH-HHHHHhhhhhhhccc
Q 019191 24 VGIIMANKQLMSSSGYAFSFATTLTGFHFAVTALVGLVSNATGLSASKHVPLWE---LLWFSIV-ANMSIAGMNFSLMLN 99 (345)
Q Consensus 24 ~~~~~~~K~~l~~~~~~~~~P~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~al~~~ 99 (345)
....+..|...++ .+ |..... ..+++.+.+......... ....++.. .+..+++ ...++.++++++++.
T Consensus 161 a~~~v~~r~~~~~----~~-~~~~~~-~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~ 233 (293)
T PRK10532 161 AIYILSGQRAGAE----HG-PATVAI-GSLIAALIFVPIGALQAG-EALWHWSILPLGLAVAILSTALPYSLEMIALTRL 233 (293)
T ss_pred HHHHHHHHHHhcc----CC-chHHHH-HHHHHHHHHHHHHHHccC-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344566766655 56 666544 444444444333222111 11122222 2445555 445777889999999
Q ss_pred chhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhhhhhcceeeee
Q 019191 100 SVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTI 147 (345)
Q Consensus 100 ~~s~~~~l~~~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l~~~ 147 (345)
+++.++++.++.|+++.++++++++|+++..+++|.+++++|++....
T Consensus 234 ~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~ 281 (293)
T PRK10532 234 PTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTL 281 (293)
T ss_pred ChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999887643
No 51
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.21 E-value=3.5e-05 Score=67.33 Aligned_cols=141 Identities=17% Similarity=0.169 Sum_probs=105.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhhccCCccccccccCchhHHHHHHH
Q 019191 153 NAKGFLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLS 232 (345)
Q Consensus 153 ~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (345)
+..|+++++.|-+.|++-..+.|-+. +.++.++..+-..++..+++........+ .......-++..+..+..+
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kll~---~~~~~eIlahRviwS~~~~l~ll~~~r~~---~~~~~~~~~p~~~~~~~l~ 78 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKLLE---PLPATEILAHRVIWSFPFMLALLFLLRQW---RELKQLLKQPKTLLMLALT 78 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHc---cCCHHHHHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHhCcHHHHHHHHH
Confidence 45799999999999999999988753 47889999888888777666555443222 1111112233344455555
Q ss_pred HHHHHHHHHHHHHhhcccCchhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhhhh
Q 019191 233 CALAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWA 299 (345)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~~~ 299 (345)
+..-..-.....|+.+.-....+++-.+++|++.+++|.++++|+++..|++..++..+|+..-.+.
T Consensus 79 a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~ 145 (293)
T COG2962 79 ALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWL 145 (293)
T ss_pred HHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 5444444444457899999999999999999999999999999999999999999999999876543
No 52
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.19 E-value=6.4e-05 Score=69.75 Aligned_cols=138 Identities=13% Similarity=0.013 Sum_probs=99.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhhcCCC-HHHHHHhhhHHHHHHHHHHHHHhhhccCCccccccccCchhHHHHHH
Q 019191 153 NAKGFLCACVAVLSTSLQQITIGSLQKKYSIG-SFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFL 231 (345)
Q Consensus 153 ~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (345)
++.-..+.++--.+...+++..|...+. .+ |+.+..++..++.+...+.... . ....+.. ......+..++.
T Consensus 47 ~~~~~~~~~~wy~~s~~~~~~nK~vl~~--~~~P~~l~~~~~~~~~l~~~~~~~~-~-~~~~~~~---~~~~~~~~~llp 119 (350)
T PTZ00343 47 KWKLALLFLTWYALNVLYVVDNKLALNM--LPLPWTISSLQLFVGWLFALLYWAT-G-FRKIPRI---KSLKLFLKNFLP 119 (350)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHh--CChhHHHHHHHHHHHHHHHHHHHHh-C-CCCCCCC---CCHHHHHHHHHH
Confidence 3444455555666667778888888775 56 8999988888877655444321 1 1000111 101123345666
Q ss_pred HHHHHHHHHHHHHHhhcccCchhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhh
Q 019191 232 SCALAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYS 297 (345)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~ 297 (345)
.++++...+...+..++++++..+.++....|++++++++++++|+++..+++|.++++.|+.+..
T Consensus 120 ~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~ 185 (350)
T PTZ00343 120 QGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS 185 (350)
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence 666666666666788999999999999999999999999999999999999999999999999865
No 53
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.17 E-value=3.2e-05 Score=70.11 Aligned_cols=70 Identities=14% Similarity=0.168 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhhhhhhhcccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhhhhhcceeeee
Q 019191 78 LLWFSIVANMSIAGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTI 147 (345)
Q Consensus 78 ~~~~~~~~~~~~~~~~~al~~~~~s~~~~l~~~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l~~~ 147 (345)
+...++....++.+.++++++.+++.++...+..|++..++++++++|+++..+++|.++++.|+.+...
T Consensus 218 l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 218 LLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence 3344555556788899999999999999999999999999999999999999999999999999877643
No 54
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=1.1e-05 Score=71.17 Aligned_cols=214 Identities=12% Similarity=0.147 Sum_probs=122.3
Q ss_pred HHHHHHHH-HHHHHhhhhhhhcccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhhhhhcceeeeecccccc--
Q 019191 77 ELLWFSIV-ANMSIAGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITDVKVN-- 153 (345)
Q Consensus 77 ~~~~~~~~-~~~~~~~~~~al~~~~~s~~~~l~~~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~-- 153 (345)
++++.|++ +.++-...+.|..|-|.+..+-+.+++.+..++++..++|||++..-.+|++++++|..++....++.+
T Consensus 65 ~~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i 144 (335)
T KOG2922|consen 65 PLWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEI 144 (335)
T ss_pred HHHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCccccc
Confidence 35566655 667888889999999999999999999999999999999999999999999999999988765433100
Q ss_pred -----------chhHH-HHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHH------HHHhhhccCCcc
Q 019191 154 -----------AKGFL-CACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVL------GPFVDYYLNGKF 215 (345)
Q Consensus 154 -----------~~G~~-~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~------~~~~~~~~~~~~ 215 (345)
-.+++ +..+-.+...+--...+ ++++ ....+.|....+.+..+-. +........+..
T Consensus 145 ~t~~el~~~~~~~~Fliy~~~iil~~~il~~~~~---p~~g--~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~~ 219 (335)
T KOG2922|consen 145 ESVEEVWELATEPGFLVYVIIIILIVLILIFFYA---PRYG--QTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGNN 219 (335)
T ss_pred ccHHHHHHHhcCccHHHHHHHHHHHHHHHheeec---cccc--ccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCCc
Confidence 02221 11111111111111222 1111 2223333333333211100 001111111111
Q ss_pred ccccccCchhHHHHHHHHHHHHHHHHHHHHhhcccCchhHhHH-hhHHHHHHHHhhHhhcCCc--cc----ccchhhHHH
Q 019191 216 ITTYKMTSGAILFIFLSCALAVFCNVSQYLCIGRFSATSFQVL-GHMKTVCVLTLGWLLFDSA--LT----FKNISGMIL 288 (345)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~pv~~~~~s~l~~~e~--~s----~~~iiG~~l 288 (345)
. ..++ ..|..+.....+.........++++..++...+.+ ..+-..++++-|.++|+|- .+ ...+.|...
T Consensus 220 q--l~~~-~ty~~~l~~~~~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~t 296 (335)
T KOG2922|consen 220 Q--LFYP-LTWIFLLVVATCVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVT 296 (335)
T ss_pred c--cccH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHH
Confidence 1 1121 23333333333333333334566776555544444 3445667788888889874 33 345678889
Q ss_pred HhHHHHHhhh
Q 019191 289 AVVGMVIYSW 298 (345)
Q Consensus 289 ii~G~~l~~~ 298 (345)
++.|+++...
T Consensus 297 i~~G~flL~~ 306 (335)
T KOG2922|consen 297 IFLGIFLLHR 306 (335)
T ss_pred hhheeeEeee
Confidence 9999998753
No 55
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.09 E-value=0.00012 Score=66.55 Aligned_cols=125 Identities=9% Similarity=0.082 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhhccCCccccccccCchhHHHHHHHHHHHHHHHHHHH
Q 019191 165 LSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCALAVFCNVSQY 244 (345)
Q Consensus 165 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (345)
.+...++++.|...++. ..|..+..+....+.+...+... . .... ..+.+...+..+...+++........+
T Consensus 12 ~~~~~~~~~NK~~l~~~-~~P~~~~~~~~~~~~~~~~~~~~-~-~~~~-----~~~~~~~~~~~~~~~g~~~~~~~~~~~ 83 (302)
T TIGR00817 12 FLNVYFNIYNKKLLNVF-PYPYFKTLISLAVGSLYCLLSWS-S-GLPK-----RLKISSALLKLLLPVAIVHTIGHVTSN 83 (302)
T ss_pred HHHHHHHHHHHHHHhhC-ChhHHHHHHHHHHHHHHHHHHHH-h-CCCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667788877642 45777777776655554433211 0 0000 011222234455555666666666777
Q ss_pred HhhcccCchhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhh
Q 019191 245 LCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYS 297 (345)
Q Consensus 245 ~~~~~~~~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~ 297 (345)
..++++++..+++.....|+++.++++++++|+++..++.|..+++.|+.+..
T Consensus 84 ~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~ 136 (302)
T TIGR00817 84 VSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS 136 (302)
T ss_pred HHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence 88999999999999999999999999999999999999999999999997643
No 56
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.06 E-value=0.00014 Score=65.98 Aligned_cols=125 Identities=14% Similarity=0.098 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhhccCCccccccccCchhHHHHHHHHHHH
Q 019191 157 FLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCALA 236 (345)
Q Consensus 157 ~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (345)
.++.++++++|+...+..|...+ +.+|.....+-..++++.+++. ... +. .++ ......++..
T Consensus 6 ~l~~l~~~~~Wg~~~~~~k~~~~--~~~p~~~~~~R~~~a~~~l~~~---~~~----~~---~~~-----~~~~~~g~~~ 68 (299)
T PRK11453 6 GVLALLVVVVWGLNFVVIKVGLH--NMPPLMLAGLRFMLVAFPAIFF---VAR----PK---VPL-----NLLLGYGLTI 68 (299)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHH---hcC----CC---Cch-----HHHHHHHHHH
Confidence 35688999999999999998766 5789999988876665544332 111 00 011 1122223222
Q ss_pred H-HHHHHHHHhhcc-cCchhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhhh
Q 019191 237 V-FCNVSQYLCIGR-FSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSW 298 (345)
Q Consensus 237 ~-~~~~~~~~~~~~-~~~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~~ 298 (345)
. ......+...++ .++..+++..+..|+++.++++++++|+++..+++|.++.++|+.+...
T Consensus 69 ~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~ 132 (299)
T PRK11453 69 SFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIE 132 (299)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhcc
Confidence 2 222233445665 5778889999999999999999999999999999999999999887653
No 57
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.06 E-value=3.8e-05 Score=59.02 Aligned_cols=62 Identities=15% Similarity=0.405 Sum_probs=54.8
Q ss_pred HHHHHHHHhhcccCchhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhhhhh
Q 019191 238 FCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAV 300 (345)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~~~~ 300 (345)
..+...++..++.++ .......+.|+++.++|+++++|+++..+++|..++.+|+.+..+.+
T Consensus 47 ~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~ 108 (113)
T PF13536_consen 47 VAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSD 108 (113)
T ss_pred HHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 555566678888885 77799999999999999999999999999999999999999987654
No 58
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.01 E-value=0.00025 Score=64.14 Aligned_cols=129 Identities=13% Similarity=0.005 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhhccCCccccccccCchhHHHHHHHH-HHH
Q 019191 158 LCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSC-ALA 236 (345)
Q Consensus 158 ~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 236 (345)
...+...+.|+...+..|...+ +.+|.+...+-..++++.+++....... ... +...+......+ +..
T Consensus 11 ~~~~~~~~iWg~~~~~~K~~~~--~~~p~~~~~~R~~~a~l~ll~~~~~~~~-----~~~----~~~~~~~~~~~g~~~~ 79 (292)
T PRK11272 11 GALFALYIIWGSTYLVIRIGVE--SWPPLMMAGVRFLIAGILLLAFLLLRGH-----PLP----TLRQWLNAALIGLLLL 79 (292)
T ss_pred HHHHHHHHHHhhHHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHHHHHHhCC-----CCC----cHHHHHHHHHHHHHHH
Confidence 4567778899999999997655 6899999999888887776655432111 110 111122222233 322
Q ss_pred HHHHHHHHHhh-cccCchhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhhh
Q 019191 237 VFCNVSQYLCI-GRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSW 298 (345)
Q Consensus 237 ~~~~~~~~~~~-~~~~~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~~ 298 (345)
...+...+... ++.++..+++..++.|+++.+++++ ++|+++..+++|..+.++|+.+...
T Consensus 80 ~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~ 141 (292)
T PRK11272 80 AVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNS 141 (292)
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhc
Confidence 33344445566 8899999999999999999999986 7999999999999999999988653
No 59
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=97.99 E-value=0.00017 Score=58.42 Aligned_cols=120 Identities=12% Similarity=0.085 Sum_probs=86.9
Q ss_pred HHHHHHHhhcc---CCcccchhhHHHHHHHHHHHHHHHHHHh-cCCCC-------CCC--C--c---hhHHHHHHHHHHH
Q 019191 26 IIMANKQLMSS---SGYAFSFATTLTGFHFAVTALVGLVSNA-TGLSA-------SKH--V--P---LWELLWFSIVANM 87 (345)
Q Consensus 26 ~~~~~K~~l~~---~~~~~~~P~~l~~~r~~~~~~~l~~~~~-~~~~~-------~~~--~--~---~~~~~~~~~~~~~ 87 (345)
-.+..|..+++ ++.+.+ |..+.......+.+++.+... .+..+ ..+ . + +..+...+++...
T Consensus 15 ~~v~~~~~~~~~~~~~~~~~-~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (153)
T PF03151_consen 15 RNVLIKKLLKKVSSNSKKLN-PLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIFLLILSGLLAFL 93 (153)
T ss_pred HHHHHHHHHhcccccccCCC-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHHHHHHHHHHHHH
Confidence 34556666665 134677 888887777777766655432 11111 000 0 1 1223344555666
Q ss_pred HHhhhhhhhcccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhhhhhcceeee
Q 019191 88 SIAGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCT 146 (345)
Q Consensus 88 ~~~~~~~al~~~~~s~~~~l~~~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l~~ 146 (345)
.+...+..++++++-+.+++.....+.+.++++++++|+++..++.|++++++|+.+-+
T Consensus 94 ~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ys 152 (153)
T PF03151_consen 94 YNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYS 152 (153)
T ss_pred HHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheee
Confidence 77788889999999999999999999999999999999999999999999999987643
No 60
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.94 E-value=0.0073 Score=55.30 Aligned_cols=219 Identities=10% Similarity=0.037 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHhhhhhhhcccchhHHHHH-hhhhHHHHHHHHHHHhcccc---C----hhhhhhhhhhhhcceeeee---
Q 019191 79 LWFSIVANMSIAGMNFSLMLNSVGFYQIS-KLSMIPVVCVMEWILHNKHY---S----KEVKMAVVVVVIGVGVCTI--- 147 (345)
Q Consensus 79 ~~~~~~~~~~~~~~~~al~~~~~s~~~~l-~~~~p~~~~~l~~l~~~e~~---~----~~~~~~~~l~~~Gv~l~~~--- 147 (345)
+..|++...+...+..+++|+.+|...-+ ..++-+...++..++++|=. + ..-.+|+++.++|+++...
T Consensus 77 ~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~ 156 (345)
T PRK13499 77 FLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQ 156 (345)
T ss_pred HHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44566777788888899999999987744 45667778888888877522 2 2347788999999998766
Q ss_pred -ccc--------c-ccchhHHHHHHHHHHHHHHHHHHHHH------hhhcCCCHHHHHHhhhH---HHHHHHHH-HHHHh
Q 019191 148 -TDV--------K-VNAKGFLCACVAVLSTSLQQITIGSL------QKKYSIGSFELLSKTAP---IQAVSLLV-LGPFV 207 (345)
Q Consensus 148 -~~~--------~-~~~~G~~~~l~a~~~~a~~~v~~~~~------~~~~~~~~~~~~~~~~~---~~~v~l~~-~~~~~ 207 (345)
.|. + ....|++.++++.+.++.|+.....- ..+.+.++.....-+.. .+.+.... .....
T Consensus 157 ~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~ 236 (345)
T PRK13499 157 LKERKMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIR 236 (345)
T ss_pred hcccccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 1 12469999999999999999433321 11124444433322222 22222111 11111
Q ss_pred -hhccCCccccccccC----chhHHHHHHHHHHHHHHHHHHHHhhcccCchhHhH---Hh-hHHHHHHHHhhHhhcCCcc
Q 019191 208 -DYYLNGKFITTYKMT----SGAILFIFLSCALAVFCNVSQYLCIGRFSATSFQV---LG-HMKTVCVLTLGWLLFDSAL 278 (345)
Q Consensus 208 -~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~l~pv~~~~~s~l~~~e~~ 278 (345)
......+.......+ .......+++++.-+..++.....-++.+.....+ +. .+.-+++.+.|. +++|.-
T Consensus 237 ~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K 315 (345)
T PRK13499 237 LAKNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWK 315 (345)
T ss_pred HhhCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhcc
Confidence 000000001111111 12333456666666666666666666664443333 33 666688899999 499987
Q ss_pred c------ccchhhHHHHhHHHHHhhh
Q 019191 279 T------FKNISGMILAVVGMVIYSW 298 (345)
Q Consensus 279 s------~~~iiG~~lii~G~~l~~~ 298 (345)
+ ...++|.+++++|..+...
T Consensus 316 ~a~~k~~~~l~~G~vliI~g~~lig~ 341 (345)
T PRK13499 316 GASRRPVRVLSLGCVVIILAANIVGL 341 (345)
T ss_pred CCCccchhHHHHHHHHHHHHHHHHhh
Confidence 7 5668999999999887654
No 61
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.78 E-value=0.00029 Score=63.61 Aligned_cols=131 Identities=15% Similarity=0.108 Sum_probs=92.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhhccCCccccccccCchhHHHHHHHHHH
Q 019191 156 GFLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCAL 235 (345)
Q Consensus 156 G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (345)
|.+++++++++|+...+..|+.. +.++.+... ..++.+.+......... +.. .....+..-+.+++.
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~---g~~~~~~~~--~~~g~l~~~~~~~~~~~----~~~----~~~~~~~~g~l~G~~ 68 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG---GGPYSQTLG--TTFGALILSIAIAIFVL----PEF----WALSIFLVGLLSGAF 68 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC---CCHHHHHHH--HHHHHHHHHHHHHHHhC----Ccc----cccHHHHHHHHHHHH
Confidence 57889999999999999998753 455555542 33344433333222211 010 112233334455555
Q ss_pred HHHHHHHHHHhhcccCchhHhHHhh-HHHHHHHHhhHhhcCCcccccc----hhhHHHHhHHHHHhhhh
Q 019191 236 AVFCNVSQYLCIGRFSATSFQVLGH-MKTVCVLTLGWLLFDSALTFKN----ISGMILAVVGMVIYSWA 299 (345)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~-l~pv~~~~~s~l~~~e~~s~~~----iiG~~lii~G~~l~~~~ 299 (345)
-...+..++.++++.+...+-...+ +.++++.+++.++++|+.+..+ ++|.+++++|+.+....
T Consensus 69 w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~ 137 (290)
T TIGR00776 69 WALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRS 137 (290)
T ss_pred HHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEec
Confidence 5556788888999999999988888 8888999999999999999999 99999999999987554
No 62
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.77 E-value=0.00054 Score=62.31 Aligned_cols=128 Identities=13% Similarity=0.074 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHhhhcCCC--HHHHHHhhhHHHHHHHHHHHHHhhhccCCccccccccCchhHHHHHHHHHHHHHHHHHH
Q 019191 166 STSLQQITIGSLQKKYSIG--SFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCALAVFCNVSQ 243 (345)
Q Consensus 166 ~~a~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (345)
++..+.+.+|++.++.... +..+++.+.....+...+...... .+.. +...+......+++.+......
T Consensus 11 ~~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~----~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 81 (303)
T PF08449_consen 11 GCCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFK----FPKS-----RKIPLKKYAILSFLFFLASVLS 81 (303)
T ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcc----ccCC-----CcChHHHHHHHHHHHHHHHHHH
Confidence 3344667888887655444 666666665444443333222111 0111 1111123334455556666677
Q ss_pred HHhhcccCchhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhhhhhhH
Q 019191 244 YLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAVEA 302 (345)
Q Consensus 244 ~~~~~~~~~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~~~~~~ 302 (345)
+..+++++.....+....+|+.++++++++++++.+..++++..++.+|+.+....+.+
T Consensus 82 ~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~ 140 (303)
T PF08449_consen 82 NAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSS 140 (303)
T ss_pred HHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccc
Confidence 78899999999999999999999999999999999999999999999999998876543
No 63
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.77 E-value=0.0013 Score=52.19 Aligned_cols=131 Identities=18% Similarity=0.212 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhhccCCccccccccCchhHHHHHHHHHHH
Q 019191 157 FLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCALA 236 (345)
Q Consensus 157 ~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (345)
.++++.+...-+.+.....++.++.+ ++......+...+.+.+.+...+.+.. ..+.....+| ....++++|
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~g-s~~~as~i~~~~G~i~~~i~~~~~~~~-~~~~~~~~p~------w~~lGG~lG 74 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALG-SPLVASFISFGVGFILLLIILLITGRP-SLASLSSVPW------WAYLGGLLG 74 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHHHHHHhccc-ccchhccCCh------HHhccHHHH
Confidence 56788888999999999999877544 588888888878888777776665432 1111211122 333478888
Q ss_pred HHHHHHHHHhhcccCchhHhHHhhHHHH-HHHHhhHh----hcCCcccccchhhHHHHhHHHHH
Q 019191 237 VFCNVSQYLCIGRFSATSFQVLGHMKTV-CVLTLGWL----LFDSALTFKNISGMILAVVGMVI 295 (345)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~l~pv-~~~~~s~l----~~~e~~s~~~iiG~~lii~G~~l 295 (345)
...-......+++.++..+......--+ .+.+++.+ .-++++++.+++|.+++++|+.+
T Consensus 75 ~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 75 VFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 8877777788999999998887777544 45666664 23356999999999999999864
No 64
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.74 E-value=0.00017 Score=55.53 Aligned_cols=72 Identities=11% Similarity=0.107 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhcccchhHHHHHh-hhhHHHHHHHHHHHhccccChhhhhhhhhhhhcceeeeec
Q 019191 77 ELLWFSIVANMSIAGMNFSLMLNSVGFYQISK-LSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTIT 148 (345)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~al~~~~~s~~~~l~-~~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l~~~~ 148 (345)
......+++..++.+...+++++|.+.+..+- ...-+.+.+.++++++|+++..++.++.++++|++.+...
T Consensus 32 ~~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~ 104 (120)
T PRK10452 32 GFILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSG 104 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence 34556666888889999999999999998884 6899999999999999999999999999999999887543
No 65
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.71 E-value=0.00022 Score=54.43 Aligned_cols=56 Identities=14% Similarity=0.157 Sum_probs=50.5
Q ss_pred HHHHhhcccCchhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhh
Q 019191 242 SQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYS 297 (345)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~ 297 (345)
.....+++.+...+-..-.+.++.+.+.|++++||++|+.+++|.++++.|+.+..
T Consensus 53 ~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 53 LWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 33457899999999998889999999999999999999999999999999998754
No 66
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.63 E-value=0.0024 Score=57.16 Aligned_cols=140 Identities=16% Similarity=0.098 Sum_probs=93.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhhccCCccccccccCchhHHHHHHHH
Q 019191 154 AKGFLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSC 233 (345)
Q Consensus 154 ~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (345)
..+....+..++.|+......|+..+. ..+......+....+.... .+...... .... +.....+...+..+
T Consensus 6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~---~~~~~~~~~~~~~~ 77 (292)
T COG0697 6 LLGLLALLLWGLLWGLSFIALKLAVES-LDPFLFAAALRFLIAALLL---LPLLLLEP-RGLR---PALRPWLLLLLLAL 77 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc-cCChHHHHHHHHHHHHHHH---HHHHHhhc-cccc---ccccchHHHHHHHH
Confidence 457778888889999999888886653 2344444443443333331 11111110 0001 00111223455555
Q ss_pred HHHHHHHHHHHHhhcccCchhHhHHhhHHHHHHHHhhH-hhcCCcccccchhhHHHHhHHHHHhhhhhh
Q 019191 234 ALAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGW-LLFDSALTFKNISGMILAVVGMVIYSWAVE 301 (345)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pv~~~~~s~-l~~~e~~s~~~iiG~~lii~G~~l~~~~~~ 301 (345)
+.........+..++++++..+....+..|++..++++ ++++|+++..++.|..+...|+.+......
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~ 146 (292)
T COG0697 78 LGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGG 146 (292)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCC
Confidence 55556666667789999999999999999999999997 777999999999999999999999776543
No 67
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.62 E-value=0.00019 Score=56.31 Aligned_cols=72 Identities=11% Similarity=0.079 Sum_probs=61.9
Q ss_pred HHHHH-HHHHHHHhhhhhhhcccchhHHHHHhhhhHHHHHHHHHH--HhccccChhhhhhhhhhhhcceeeeecc
Q 019191 78 LLWFS-IVANMSIAGMNFSLMLNSVGFYQISKLSMIPVVCVMEWI--LHNKHYSKEVKMAVVVVVIGVGVCTITD 149 (345)
Q Consensus 78 ~~~~~-~~~~~~~~~~~~al~~~~~s~~~~l~~~~p~~~~~l~~l--~~~e~~~~~~~~~~~l~~~Gv~l~~~~~ 149 (345)
+...+ +++..+..+.+++++..+++.+.-+.+..+.++.+.++. ++||+++..|+.|++++++|+.++..++
T Consensus 50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 34444 457778899999999999999999999999888888885 7999999999999999999999876443
No 68
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.60 E-value=0.0011 Score=60.47 Aligned_cols=74 Identities=23% Similarity=0.289 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCchhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhhhhhh
Q 019191 228 FIFLSCALAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAVE 301 (345)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~~~~~ 301 (345)
..+..+++=+..|+....+.++++.+.+.+......++++++|++++++++++.|++|..+++.|+.+......
T Consensus 81 ~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~ 154 (334)
T PF06027_consen 81 KYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDV 154 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecc
Confidence 33444677778899999999999999999999999999999999999999999999999999999998766543
No 69
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.50 E-value=0.00047 Score=52.37 Aligned_cols=69 Identities=13% Similarity=0.115 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhhhhhhhcccchhHHHHH-hhhhHHHHHHHHHHHhccccChhhhhhhhhhhhcceeeeec
Q 019191 80 WFSIVANMSIAGMNFSLMLNSVGFYQIS-KLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTIT 148 (345)
Q Consensus 80 ~~~~~~~~~~~~~~~al~~~~~s~~~~l-~~~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l~~~~ 148 (345)
..-+++..++.+...+++.+|.+.+..+ ....-+.+.+.++++++|++++.++.|+.+.++|++.+...
T Consensus 35 ~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~ 104 (110)
T PRK09541 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3445567778888889999999999888 45788999999999999999999999999999999887543
No 70
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.47 E-value=0.00069 Score=50.92 Aligned_cols=69 Identities=12% Similarity=0.013 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhhhhhhhcccchhHHHHHhh-hhHHHHHHHHHHHhccccChhhhhhhhhhhhcceeee
Q 019191 78 LLWFSIVANMSIAGMNFSLMLNSVGFYQISKL-SMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCT 146 (345)
Q Consensus 78 ~~~~~~~~~~~~~~~~~al~~~~~s~~~~l~~-~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l~~ 146 (345)
.....+++..++.+...+++.+|.+.+..+=. ...+.+.+.+++++||++++.|+.++.+.++|++.+.
T Consensus 32 ~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 32 SIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence 34455667778888889999999999876655 7889999999999999999999999999999998764
No 71
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.43 E-value=0.0013 Score=49.73 Aligned_cols=67 Identities=9% Similarity=0.082 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHhhhhhhhcccchhHHHHHhh-hhHHHHHHHHHHHhccccChhhhhhhhhhhhcceee
Q 019191 79 LWFSIVANMSIAGMNFSLMLNSVGFYQISKL-SMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVC 145 (345)
Q Consensus 79 ~~~~~~~~~~~~~~~~al~~~~~s~~~~l~~-~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l~ 145 (345)
....+++..++.+...+++++|.+.+..+=. ..-+.+.+.+++++||++++.|+.++.+.++|++.+
T Consensus 39 ~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 39 ILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 3445556678888888999999999876654 778899999999999999999999999999999765
No 72
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=97.34 E-value=4.1e-05 Score=65.04 Aligned_cols=204 Identities=13% Similarity=0.160 Sum_probs=136.6
Q ss_pred HHHHHHHHHHhhhhhhhcccchhHHH-HHhhhhHHHHHHHHHHHhccccChhh----hhhhhhhhhcceeeeecccc---
Q 019191 80 WFSIVANMSIAGMNFSLMLNSVGFYQ-ISKLSMIPVVCVMEWILHNKHYSKEV----KMAVVVVVIGVGVCTITDVK--- 151 (345)
Q Consensus 80 ~~~~~~~~~~~~~~~al~~~~~s~~~-~l~~~~p~~~~~l~~l~~~e~~~~~~----~~~~~l~~~Gv~l~~~~~~~--- 151 (345)
..|.+-.++...++-|++++++|.+. +-..+.-+-+-+++++.+||=.+..+ ..++++.++|+.+-+..|.+
T Consensus 64 isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~ 143 (288)
T COG4975 64 ISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKE 143 (288)
T ss_pred HhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecccccc
Confidence 34555556777888899999998876 33446677788899999999776666 45788899999998877641
Q ss_pred -----ccchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhhccCCccccccccCchhH
Q 019191 152 -----VNAKGFLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAI 226 (345)
Q Consensus 152 -----~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (345)
.--.|....+.+.+.|..|.+..+.. +.+-+....-++ +.+.+.+...... ..+ . ..+ ...
T Consensus 144 ~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f----~v~g~saiLPqA----iGMv~~ali~~~~-~~~-~---~~~-K~t 209 (288)
T COG4975 144 EENPSNLKKGIVILLISTLGYVGYVVLFQLF----DVDGLSAILPQA----IGMVIGALILGFF-KME-K---RFN-KYT 209 (288)
T ss_pred ccChHhhhhheeeeeeeccceeeeEeeeccc----cccchhhhhHHH----HHHHHHHHHHhhc-ccc-c---chH-HHH
Confidence 11258888889999999999988753 233344333332 2222222222111 000 0 111 111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCchhHhHHhhHHHHHHHHhhHhhcCCcccccch----hhHHHHhHHHHHhh
Q 019191 227 LFIFLSCALAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNI----SGMILAVVGMVIYS 297 (345)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~i----iG~~lii~G~~l~~ 297 (345)
+.-...++.....|...+..-++.+-.+.=.++.+.-+.+.+-|.++++|+-|..++ +|.+++++|..+..
T Consensus 210 ~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg 284 (288)
T COG4975 210 WLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLG 284 (288)
T ss_pred HHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhh
Confidence 244455666566777777777888877777778888899999999999999887764 57777777776644
No 73
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.34 E-value=0.00083 Score=50.05 Aligned_cols=70 Identities=11% Similarity=0.037 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhhhhhhhcccchhHHHHH-hhhhHHHHHHHHHHHhccccChhhhhhhhhhhhcceeeee
Q 019191 78 LLWFSIVANMSIAGMNFSLMLNSVGFYQIS-KLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTI 147 (345)
Q Consensus 78 ~~~~~~~~~~~~~~~~~al~~~~~s~~~~l-~~~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l~~~ 147 (345)
.....+++..++.+...+++++|.+.+..+ .....+.+++.++++++||.+..+++++.+.++|++.+..
T Consensus 33 ~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 33 SILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence 344556677788889999999999987654 5577889999999999999999999999999999987643
No 74
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.19 E-value=0.0013 Score=57.75 Aligned_cols=76 Identities=21% Similarity=0.322 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCchhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhhhhhhH
Q 019191 227 LFIFLSCALAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAVEA 302 (345)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~~~~~~ 302 (345)
+....-+++-...|...+..+++.+|....+....+.+++.++++++++++++..||++..+...|+.+.......
T Consensus 18 ~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~ 93 (244)
T PF04142_consen 18 LKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ 93 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence 4566677777778888999999999999999999999999999999999999999999999999999997765443
No 75
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.11 E-value=0.0021 Score=49.47 Aligned_cols=55 Identities=18% Similarity=0.405 Sum_probs=44.4
Q ss_pred HhhcccCchh-HhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhhhh
Q 019191 245 LCIGRFSATS-FQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWA 299 (345)
Q Consensus 245 ~~~~~~~~~~-~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~~~ 299 (345)
..+++.+... .++..-+.-+.+.+.|+++|||++|+.+++|..++++|+...+..
T Consensus 49 ~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~ 104 (120)
T PRK10452 49 FAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSG 104 (120)
T ss_pred HHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence 4566665443 445566788888999999999999999999999999999987543
No 76
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.07 E-value=0.0029 Score=46.60 Aligned_cols=57 Identities=9% Similarity=-0.020 Sum_probs=34.9
Q ss_pred HHHHHHHHhhhhhhhcccchhHHHHH-hhhhHHHHHHHHHHHhccccChhhhhhhhhh
Q 019191 82 SIVANMSIAGMNFSLMLNSVGFYQIS-KLSMIPVVCVMEWILHNKHYSKEVKMAVVVV 138 (345)
Q Consensus 82 ~~~~~~~~~~~~~al~~~~~s~~~~l-~~~~p~~~~~l~~l~~~e~~~~~~~~~~~l~ 138 (345)
..+++.++.+...+++++|.+.+..+ .....+.+.+.+.+++||++|..|+.|+.+.
T Consensus 36 ~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 36 VVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 34677788888999999999999655 5699999999999999999999999998763
No 77
>PRK13499 rhamnose-proton symporter; Provisional
Probab=96.89 E-value=0.01 Score=54.42 Aligned_cols=141 Identities=15% Similarity=0.106 Sum_probs=90.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhh-hccCCccccccc-cCchhHHHHHH
Q 019191 154 AKGFLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVD-YYLNGKFITTYK-MTSGAILFIFL 231 (345)
Q Consensus 154 ~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~ 231 (345)
..|+++.+++++|++...+-.|| .|+ -+++.. |- ..+. +.-+..|+.- ....+...+... .+...+....+
T Consensus 6 ~~G~~~~~i~~~~~GS~~~p~K~-~k~---w~wE~~-W~-v~gi-~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l 78 (345)
T PRK13499 6 ILGIIWHLIGGASSGSFYAPFKK-VKK---WSWETM-WS-VGGI-FSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFL 78 (345)
T ss_pred HHHHHHHHHHHHHhhcccccccc-cCC---CchhHH-HH-HHHH-HHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHH
Confidence 47999999999999999998887 342 344444 33 2222 2222333211 111111122122 44555566667
Q ss_pred HHHHHHHHHHHHHHhhcccCchhH-hHHhhHHHHHHHHhhHhhcCCcc---c----ccchhhHHHHhHHHHHhhhhhh
Q 019191 232 SCALAVFCNVSQYLCIGRFSATSF-QVLGHMKTVCVLTLGWLLFDSAL---T----FKNISGMILAVVGMVIYSWAVE 301 (345)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~pv~~~~~s~l~~~e~~---s----~~~iiG~~lii~G~~l~~~~~~ 301 (345)
++++-...+..++..+++.+-+.. .+..-++-+.+.+.+.+++||-. + ..-++|.+++++|+.+..+...
T Consensus 79 ~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~ 156 (345)
T PRK13499 79 FGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQ 156 (345)
T ss_pred HHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 777777777878888888776554 44556788888999999998643 2 3467888999999999887543
No 78
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=96.76 E-value=0.00039 Score=59.96 Aligned_cols=70 Identities=14% Similarity=0.254 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHhhcccCchhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhhhh
Q 019191 230 FLSCALAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWA 299 (345)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~~~ 299 (345)
++=|+.|+..-...|++..+.+-..+.+..+..|+++++++|.+++|+.|..+.+|..+.+.|+++..+.
T Consensus 101 iLRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRP 170 (346)
T KOG4510|consen 101 ILRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRP 170 (346)
T ss_pred EeehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecC
Confidence 3345566666666778899999999999999999999999999999999999999999999999997754
No 79
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=96.76 E-value=0.0076 Score=45.78 Aligned_cols=55 Identities=18% Similarity=0.393 Sum_probs=45.1
Q ss_pred HhhcccCchh-HhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhhhh
Q 019191 245 LCIGRFSATS-FQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWA 299 (345)
Q Consensus 245 ~~~~~~~~~~-~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~~~ 299 (345)
.++++.+... .++..-+.-+.+.+.|+++|+|++|+.+++|..+++.|+...+..
T Consensus 49 ~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~ 104 (110)
T PRK09541 49 QTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL 104 (110)
T ss_pred HHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4567766543 455566788888999999999999999999999999999997643
No 80
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.76 E-value=0.061 Score=42.93 Aligned_cols=137 Identities=17% Similarity=0.126 Sum_probs=87.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhhccCCccccccccCchhHHHHHHHH
Q 019191 154 AKGFLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSC 233 (345)
Q Consensus 154 ~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (345)
....+.++.+..+...+.-...++.+..+ +|..........+.+.+.+...+.+.+.........+| ....++
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~-spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pw------W~~~GG 76 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLG-SPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPW------WAWIGG 76 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCch------HHHHcc
Confidence 45677888889999999999988877544 56666666666677777666666443322111111111 233344
Q ss_pred HHHHHHHHHHHHhhcccCchhHhHHhhH-HHHHHHHhhHhhcC----CcccccchhhHHHHhHHHHHhh
Q 019191 234 ALAVFCNVSQYLCIGRFSATSFQVLGHM-KTVCVLTLGWLLFD----SALTFKNISGMILAVVGMVIYS 297 (345)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~pv~~~~~s~l~~~----e~~s~~~iiG~~lii~G~~l~~ 297 (345)
++|..+-........+.+++....+... +-+.+++++.+=+. .+++...++|..+++.|+++..
T Consensus 77 ~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~ 145 (150)
T COG3238 77 LLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLAR 145 (150)
T ss_pred chhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhc
Confidence 6666655555566788777766554443 55556666654333 3599999999999999966543
No 81
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.63 E-value=0.014 Score=43.51 Aligned_cols=55 Identities=18% Similarity=0.373 Sum_probs=46.9
Q ss_pred HhhcccCc-hhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhhhh
Q 019191 245 LCIGRFSA-TSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWA 299 (345)
Q Consensus 245 ~~~~~~~~-~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~~~ 299 (345)
..+|+.+- +..++..-+-.+.+.+.|+++|+|++++.+++|..+++.|+...+..
T Consensus 49 ~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 49 LALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 34677654 45688888899999999999999999999999999999999987643
No 82
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=96.62 E-value=0.047 Score=48.18 Aligned_cols=66 Identities=11% Similarity=0.036 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhhhhhhhcccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhh----hhhhhhhcce
Q 019191 78 LLWFSIVANMSIAGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKM----AVVVVVIGVG 143 (345)
Q Consensus 78 ~~~~~~~~~~~~~~~~~al~~~~~s~~~~l~~~~p~~~~~l~~l~~~e~~~~~~~~----~~~l~~~Gv~ 143 (345)
=...|++...++.+...|.+....+.+-.+.++.+++..+.+.+++||+-+++++. |+++.++|.+
T Consensus 198 nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~i 267 (269)
T PF06800_consen 198 NILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAI 267 (269)
T ss_pred hhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhh
Confidence 34678888999999999999999999999999999999999999999998888754 5555555544
No 83
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=96.59 E-value=0.048 Score=47.08 Aligned_cols=57 Identities=7% Similarity=-0.027 Sum_probs=51.4
Q ss_pred HHHhhhhhhhcccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhhhhhcce
Q 019191 87 MSIAGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVG 143 (345)
Q Consensus 87 ~~~~~~~~al~~~~~s~~~~l~~~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~ 143 (345)
..+.+.-.++...+..++.++.+..|.+.++.++++++|++|..||.++...+.+.+
T Consensus 222 lPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsa 278 (292)
T COG5006 222 LPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASA 278 (292)
T ss_pred cchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 355666779999999999999999999999999999999999999999988877665
No 84
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.58 E-value=0.06 Score=40.75 Aligned_cols=53 Identities=25% Similarity=0.538 Sum_probs=43.9
Q ss_pred HhhcccCc-hhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhh
Q 019191 245 LCIGRFSA-TSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYS 297 (345)
Q Consensus 245 ~~~~~~~~-~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~ 297 (345)
.++|+.+. +..++..-+.-+.+.+.|+++|+|++|+.+++|..+++.|+...+
T Consensus 54 ~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 54 QAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 34666554 445677778888889999999999999999999999999998754
No 85
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=96.51 E-value=0.0064 Score=53.22 Aligned_cols=132 Identities=18% Similarity=0.216 Sum_probs=80.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhhccCCccccccccCchhHHHHHHHHHH
Q 019191 156 GFLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCAL 235 (345)
Q Consensus 156 G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (345)
|++.+++|+++++...+=.|+.- ..|++-.+.+.+....+ .+.+.... . . .. .+ .....+++.+
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~---~gDg~~fQw~~~~~i~~----~g~~v~~~-~-~-~p--~f----~p~amlgG~l 64 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFD---TGDGFFFQWVMCSGIFL----VGLVVNLI-L-G-FP--PF----YPWAMLGGAL 64 (254)
T ss_pred CchhHHHHHHHhcccceeeEecc---CCCcHHHHHHHHHHHHH----HHHHHHHh-c-C-CC--cc----eeHHHhhhhh
Confidence 56788899999998888888643 23565555444322221 12221111 0 0 00 11 1134445555
Q ss_pred HHHHHHHHHHhhcccCc-hhHhHHhhHHHHHHHHhhHh-hcCCc-----ccccchhhHHHHhHHHHHhhhhhhHH
Q 019191 236 AVFCNVSQYLCIGRFSA-TSFQVLGHMKTVCVLTLGWL-LFDSA-----LTFKNISGMILAVVGMVIYSWAVEAE 303 (345)
Q Consensus 236 ~~~~~~~~~~~~~~~~~-~~~~~~~~l~pv~~~~~s~l-~~~e~-----~s~~~iiG~~lii~G~~l~~~~~~~~ 303 (345)
....|....-+++.++- .-..+.+..+-+.+...|.+ +|+++ -.+.+++|.+++++|..++..-|.++
T Consensus 65 W~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 65 WATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred hhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence 55666666666777663 44556667777788777765 56653 45788999999999999998765544
No 86
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.41 E-value=0.029 Score=42.22 Aligned_cols=54 Identities=15% Similarity=0.248 Sum_probs=45.9
Q ss_pred HhhcccCc-hhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhhh
Q 019191 245 LCIGRFSA-TSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSW 298 (345)
Q Consensus 245 ~~~~~~~~-~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~~ 298 (345)
.++|+.+. +..++..-+..+.+.+.|+++|+|++|+.+++|..+++.|+...+.
T Consensus 48 ~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 48 WAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 44666554 4567888889999999999999999999999999999999998653
No 87
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=96.38 E-value=0.0071 Score=54.72 Aligned_cols=118 Identities=19% Similarity=0.189 Sum_probs=79.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhhccCCccccccccCchhHHHHHHH
Q 019191 153 NAKGFLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLS 232 (345)
Q Consensus 153 ~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (345)
...|..+++.++++.+...+++|+-.++.+..+..-- . ...++ +..+.|+.-...
T Consensus 5 ~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~--~----------------------~~~~~-l~~~~W~~G~~~ 59 (300)
T PF05653_consen 5 FYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAG--S----------------------GGRSY-LRRPLWWIGLLL 59 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc--c----------------------hhhHH-HhhHHHHHHHHH
Confidence 3579999999999999999999986543221110000 0 00000 001111222222
Q ss_pred HHHHHHHHHHHHHhhcccCchhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhhh
Q 019191 233 CALAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSW 298 (345)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~~ 298 (345)
...+... .+.++...+.+..+.++.+.-++..+++..+++|+++..+++|..+++.|..+...
T Consensus 60 ~~~g~~~---~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~ 122 (300)
T PF05653_consen 60 MVLGEIL---NFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVI 122 (300)
T ss_pred HhcchHH---HHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEE
Confidence 2223333 33457778899999999999999999999999999999999999999999987654
No 88
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=96.31 E-value=0.1 Score=44.96 Aligned_cols=66 Identities=6% Similarity=-0.049 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhhhhhhhcccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhhhhhccee
Q 019191 79 LWFSIVANMSIAGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGV 144 (345)
Q Consensus 79 ~~~~~~~~~~~~~~~~al~~~~~s~~~~l~~~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l 144 (345)
....+....+..+..+.++|.++....+...+.++++.+++.++++|+++..+|.|..+.+.|+.+
T Consensus 156 ~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 156 WIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 344455666667788899999999999999999999999999999999999999999999999764
No 89
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=96.19 E-value=0.15 Score=46.27 Aligned_cols=139 Identities=15% Similarity=0.148 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhh--hcCCCHHHHHHhhhHHHHHHHHHHHHHhhhccCCc---ccccccc-CchhHHHHHHH
Q 019191 159 CACVAVLSTSLQQITIGSLQK--KYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGK---FITTYKM-TSGAILFIFLS 232 (345)
Q Consensus 159 ~~l~a~~~~a~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~ 232 (345)
..+...+-.+......|+..+ +.++.|....+.+=.+-.++.......-+...... ......+ ++.....+..-
T Consensus 19 ~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~vP 98 (345)
T KOG2234|consen 19 SLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVSVP 98 (345)
T ss_pred HHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHHHH
Confidence 334444445555555554332 22456666666555444444433332222110001 1111111 12133455556
Q ss_pred HHHHHHHHHHHHHhhcccCchhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhh
Q 019191 233 CALAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYS 297 (345)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~ 297 (345)
.++-...|...|....+.+|.+..+...++.+.+.+++.++++++++..||...++...|+.+..
T Consensus 99 a~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ 163 (345)
T KOG2234|consen 99 ALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQ 163 (345)
T ss_pred HHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 66666777788889999999999999999999999999999999999999999999999999876
No 90
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=95.68 E-value=0.031 Score=42.40 Aligned_cols=69 Identities=12% Similarity=0.196 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHHHhhhhhhhcccchhHHHHH-hhhhHHHHHHHHHHHhccccChhhhhhhhhhhhcceee
Q 019191 76 WELLWFSIVANMSIAGMNFSLMLNSVGFYQIS-KLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVC 145 (345)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~al~~~~~s~~~~l-~~~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l~ 145 (345)
+.+.|..+ +..+...+++.+...+.|.+.-+ .+++=++|++.++++.+|..++.++.|+++.++|+.++
T Consensus 43 ~y~ipf~l-Nq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 43 KYIIPFLL-NQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHH-HHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 33444433 44455668888999999998877 58899999999988888888999999999999999875
No 91
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=95.60 E-value=0.0075 Score=51.65 Aligned_cols=132 Identities=17% Similarity=0.184 Sum_probs=82.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhhccCCccccccccCchhHHHHHHHHHH
Q 019191 156 GFLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCAL 235 (345)
Q Consensus 156 G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (345)
+++.+++=++.|+.......|. +-+|.+.+.-+.. +++...+...+. ..+ ..+...+..-+.+++.
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~----GG~p~qQ~lGtT~-GALifaiiv~~~----~~p-----~~T~~~~iv~~isG~~ 68 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKF----GGKPYQQTLGTTL-GALIFAIIVFLF----VSP-----ELTLTIFIVGFISGAF 68 (288)
T ss_pred hHHHHHHHHHHhcccceeeeec----CCChhHhhhhccH-HHHHHHHHHhee----ecC-----ccchhhHHHHHHhhhH
Confidence 4567788888888777666542 3345554444433 333332222111 001 1223334455566666
Q ss_pred HHHHHHHHHHhhcccCchhHhHHhh-HHHHHHHHhhHhhcCCcccccchh----hHHHHhHHHHHhhhhhh
Q 019191 236 AVFCNVSQYLCIGRFSATSFQVLGH-MKTVCVLTLGWLLFDSALTFKNIS----GMILAVVGMVIYSWAVE 301 (345)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~-l~pv~~~~~s~l~~~e~~s~~~ii----G~~lii~G~~l~~~~~~ 301 (345)
..+.+..+++.++..+.+.+..+++ .+-+-+.+++++.|||-.++.+++ ..+++++|+.+.++.++
T Consensus 69 Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~ 139 (288)
T COG4975 69 WSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDR 139 (288)
T ss_pred hhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecc
Confidence 6666777788888888777766554 567778899999999998877653 45677888888776654
No 92
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=95.35 E-value=0.72 Score=36.60 Aligned_cols=113 Identities=13% Similarity=0.154 Sum_probs=77.2
Q ss_pred HHHHHHhhccCCcccchhhHHHHHHHHHHHHHHHHHHhc-CCCC---CCCCchhHHHHHHHHHHHHHhhhhhhhcccchh
Q 019191 27 IMANKQLMSSSGYAFSFATTLTGFHFAVTALVGLVSNAT-GLSA---SKHVPLWELLWFSIVANMSIAGMNFSLMLNSVG 102 (345)
Q Consensus 27 ~~~~K~~l~~~~~~~~~P~~l~~~r~~~~~~~l~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~s 102 (345)
...|-.+-+. .+ + |...+...+..+.+.+.++... +..+ .++.+|+.+ .-|++......+..++...++++
T Consensus 17 ~~~N~~L~~~--~g-s-~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~-lGG~lG~~~V~~~~~~vp~lG~~ 91 (138)
T PF04657_consen 17 AAFNGQLGKA--LG-S-PLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAY-LGGLLGVFFVLSNIILVPRLGAA 91 (138)
T ss_pred HHHHHHHHHH--hC-c-cHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHh-ccHHHHHHHHHHHHHHhhhhhHH
Confidence 3445544444 22 4 8999999999888776654332 1111 233344433 37788888888888999999988
Q ss_pred HHHHHhhh-hHHHHHHHHHH----HhccccChhhhhhhhhhhhccee
Q 019191 103 FYQISKLS-MIPVVCVMEWI----LHNKHYSKEVKMAVVVVVIGVGV 144 (345)
Q Consensus 103 ~~~~l~~~-~p~~~~~l~~l----~~~e~~~~~~~~~~~l~~~Gv~l 144 (345)
....+.-+ +-+...+++.+ .-|+|+++.|..|+++.++|+.+
T Consensus 92 ~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 92 LTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 88766554 45566666664 34678999999999999999864
No 93
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=94.96 E-value=0.087 Score=38.73 Aligned_cols=45 Identities=20% Similarity=0.313 Sum_probs=25.2
Q ss_pred HhhcccCchhH-hHHhhHHHHHHHHhhHhhcCCcccccchhhHHHH
Q 019191 245 LCIGRFSATSF-QVLGHMKTVCVLTLGWLLFDSALTFKNISGMILA 289 (345)
Q Consensus 245 ~~~~~~~~~~~-~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~li 289 (345)
.++++.+...+ .+..-+..+...+.|.+++||++|+.+++|..+|
T Consensus 48 ~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 48 LALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 56788776655 6667788999999999999999999999998875
No 94
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=94.78 E-value=0.49 Score=42.10 Aligned_cols=114 Identities=12% Similarity=0.076 Sum_probs=82.0
Q ss_pred HHHHHhhccCCcccchhhHHHHHHHHHHHHHHHHHHh--cCCCC------CCCCchhHHHHHHHHHHHHHhhhhhhhccc
Q 019191 28 MANKQLMSSSGYAFSFATTLTGFHFAVTALVGLVSNA--TGLSA------SKHVPLWELLWFSIVANMSIAGMNFSLMLN 99 (345)
Q Consensus 28 ~~~K~~l~~~~~~~~~P~~l~~~r~~~~~~~l~~~~~--~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~al~~~ 99 (345)
...+-+++. ++.+ +..+.+.--+...+.-..... ....+ ..+.-++.++.++.+.+++..+-++-++.-
T Consensus 189 ~tQd~lf~~--~k~s-~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~F 265 (327)
T KOG1581|consen 189 ATQDSLFKK--YKVS-SLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYSTCGAVGQLFIFYTIERF 265 (327)
T ss_pred hHHHHHhcc--CCcc-HhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHHhhhhhhheehhhHhhc
Confidence 444555555 7777 665555444444443332211 11111 112235678999999999999988888888
Q ss_pred chhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhhhhhccee
Q 019191 100 SVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGV 144 (345)
Q Consensus 100 ~~s~~~~l~~~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l 144 (345)
++-..+++..+-=+++..++.++++++.++.||.|+.+.+.|...
T Consensus 266 Gslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l 310 (327)
T KOG1581|consen 266 GSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL 310 (327)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence 888889999999999999999999999999999999988887754
No 95
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=94.59 E-value=0.034 Score=47.37 Aligned_cols=70 Identities=13% Similarity=0.088 Sum_probs=63.6
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhcccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhhhhhccee
Q 019191 75 LWELLWFSIVANMSIAGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGV 144 (345)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~al~~~~~s~~~~l~~~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l 144 (345)
+.++..+++..+++..+-+.-..+.+|-+.+++..+--+||.+.++++++.+++.+||+|.++.+.|...
T Consensus 241 ~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~ 310 (337)
T KOG1580|consen 241 FWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTA 310 (337)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhh
Confidence 4567778888999999888888889999999999999999999999999999999999999999998865
No 96
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=94.53 E-value=0.074 Score=48.20 Aligned_cols=122 Identities=16% Similarity=0.157 Sum_probs=88.8
Q ss_pred HHHHHHHHHhhccCCcccchhhHHHHHHHHHHHHHHH-HHHhc--CCC----C--CCCCchhHHHHHHHHHHHHHhhhhh
Q 019191 24 VGIIMANKQLMSSSGYAFSFATTLTGFHFAVTALVGL-VSNAT--GLS----A--SKHVPLWELLWFSIVANMSIAGMNF 94 (345)
Q Consensus 24 ~~~~~~~K~~l~~~~~~~~~P~~l~~~r~~~~~~~l~-~~~~~--~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (345)
..-.+..|.+++.++.+.+ ++.+....--++++.+. ..... +.. . ....+...+...+++....+...+.
T Consensus 176 al~~I~~~~ll~~~~~~~~-~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~f~~Nls~f~ 254 (316)
T KOG1441|consen 176 ALRNILSKKLLTSKGESLN-SMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLLNSVLAFLLNLSAFL 254 (316)
T ss_pred HHHHHHHHHhhhccccccC-chHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 3445667778865568899 99888888888777666 33221 111 0 1111122234445666666777888
Q ss_pred hhcccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhhhhhcceeee
Q 019191 95 SLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCT 146 (345)
Q Consensus 95 al~~~~~s~~~~l~~~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l~~ 146 (345)
.+..+++-+.++....--.++.+.++++++++.+..+..|.+++++|+.+-+
T Consensus 255 ~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~ 306 (316)
T KOG1441|consen 255 VIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYS 306 (316)
T ss_pred HHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHH
Confidence 9999999999999999888899999999999999999999999999998754
No 97
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=93.85 E-value=0.057 Score=49.20 Aligned_cols=73 Identities=15% Similarity=0.266 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCchhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhhhhhh
Q 019191 229 IFLSCALAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAVE 301 (345)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~~~~~ 301 (345)
.+.-|...+..++....++++++....+++....-.++..+|..+.+|++|+...++..+.+.|+++.+..+-
T Consensus 162 sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s 234 (416)
T KOG2765|consen 162 SLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDS 234 (416)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccc
Confidence 3444555667777777889999999999999999999999999999999999999999999999999876544
No 98
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.65 E-value=5 Score=36.17 Aligned_cols=135 Identities=15% Similarity=0.105 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHH-HHHhhhHHHHHHHHHHHHHhhhccCCccccccccCchhHHHHHHHHH
Q 019191 156 GFLCACVAVLSTSLQQITIGSLQKKYSIGSFE-LLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFLSCA 234 (345)
Q Consensus 156 G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (345)
....++.-+++..+..+..|.....++.+... +..++++.+.+.+...-.. +.. ...+..+. ......-..+
T Consensus 13 ~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~--~lv---~~~~l~~~--~~kk~~P~~~ 85 (314)
T KOG1444|consen 13 PLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRL--GLV---NFRPLDLR--TAKKWFPVSL 85 (314)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHh--cee---ecCCcChH--HHHHHccHHH
Confidence 45555666667777777888777777665433 3347776666655544322 100 11111121 1111111122
Q ss_pred HHHHHHHHHHHhhcccCchhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhh
Q 019191 235 LAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYS 297 (345)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~ 297 (345)
.-++.-+..-..+++.+-....++..+.|+.+.+...++++.+++...+.....+++|...+.
T Consensus 86 lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~ 148 (314)
T KOG1444|consen 86 LFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAA 148 (314)
T ss_pred HHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhc
Confidence 222232333356899999999999999999999999999999999999999999999888754
No 99
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=92.36 E-value=0.36 Score=36.70 Aligned_cols=53 Identities=21% Similarity=0.380 Sum_probs=43.1
Q ss_pred HHHhhcccCchhHhHH-hhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHH
Q 019191 243 QYLCIGRFSATSFQVL-GHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVI 295 (345)
Q Consensus 243 ~~~~~~~~~~~~~~~~-~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l 295 (345)
.+..+++.+-+.+..+ +.+.-+++.+.++++.+|..+...++|.++++.|+.+
T Consensus 58 f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 58 FFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 3445777777777666 4788889999999888888899999999999999864
No 100
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=91.54 E-value=0.13 Score=42.74 Aligned_cols=64 Identities=20% Similarity=0.235 Sum_probs=57.4
Q ss_pred HHHHHHHHhhcccCchhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhhhhhh
Q 019191 238 FCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAVE 301 (345)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~~~~~ 301 (345)
..|+.+..++++++|+.++....-+..+..+++++++++++....++..++.+.|++...+...
T Consensus 65 ~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN 128 (290)
T KOG4314|consen 65 GANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADN 128 (290)
T ss_pred cCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccc
Confidence 4566677789999999999999999999999999999999999999999999999998876554
No 101
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.38 E-value=0.057 Score=48.25 Aligned_cols=124 Identities=18% Similarity=0.116 Sum_probs=84.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhhccCCccccccccCchhHHHHHH
Q 019191 152 VNAKGFLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKMTSGAILFIFL 231 (345)
Q Consensus 152 ~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (345)
.+..|..+++.+.+..+...++.||-.++... .-+ + .++.-.++- ..+.|+.-+.
T Consensus 18 d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~---~~~-------------------r--a~~gg~~yl-~~~~Ww~G~l 72 (335)
T KOG2922|consen 18 DNIIGLVLAISSSIFIGSSFILKKKGLKRAGA---SGL-------------------R--AGEGGYGYL-KEPLWWAGML 72 (335)
T ss_pred CceeeeeehhhccEEEeeehhhhHHHHHHHhh---hcc-------------------c--ccCCCcchh-hhHHHHHHHH
Confidence 35678888998888888888888876554211 000 0 000000000 1234445444
Q ss_pred HHHHHHHHHHHHHHhhcccCchhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhhhhhhHH
Q 019191 232 SCALAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAVEAE 303 (345)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~~~~~~~ 303 (345)
.-..|=..|++. ....+++-.+.++.+.-+...+++..+++|++++...+|++++++|.........++
T Consensus 73 tm~vGei~NFaA---YaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e 141 (335)
T KOG2922|consen 73 TMIVGEIANFAA---YAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKE 141 (335)
T ss_pred HHHHHhHhhHHH---HhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcc
Confidence 555555555554 445788888999999999999999999999999999999999999998876554433
No 102
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=89.35 E-value=2.4 Score=36.12 Aligned_cols=119 Identities=7% Similarity=0.014 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHhhccCCcccchhhHHHHHHHHHHHHHHHHHHhcC-CCCCC----CCc---hhHHHHHHHHHHHHHh
Q 019191 19 NVISSVGIIMANKQLMSSSGYAFSFATTLTGFHFAVTALVGLVSNATG-LSASK----HVP---LWELLWFSIVANMSIA 90 (345)
Q Consensus 19 ~~~~s~~~~~~~K~~l~~~~~~~~~P~~l~~~r~~~~~~~l~~~~~~~-~~~~~----~~~---~~~~~~~~~~~~~~~~ 90 (345)
|...+...++..|...+- -++. -+--.++.-+++..++..+...- ...+. ..+ ...++..|++.....+
T Consensus 163 NclssaafVL~mrkri~l--tNf~-d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy 239 (309)
T COG5070 163 NCLSSAAFVLIMRKRIKL--TNFK-DFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISY 239 (309)
T ss_pred hhHhHHHHHHHHHHhhcc--cccc-hhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhh
Confidence 444444445555554433 2354 55566666777666655543321 11111 111 2245666777777777
Q ss_pred hhhhhhcccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhhhhh
Q 019191 91 GMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVI 140 (345)
Q Consensus 91 ~~~~al~~~~~s~~~~l~~~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~ 140 (345)
+.-+++.-++..+++++.+++-...++-+.+++.|+.++.++.++.+++.
T Consensus 240 ~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGfl 289 (309)
T COG5070 240 CSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFL 289 (309)
T ss_pred ccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHH
Confidence 88889999999999999999988888888888999888888777766544
No 103
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.03 E-value=10 Score=30.45 Aligned_cols=122 Identities=8% Similarity=0.033 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHhhccCCcccchhhHHHHHHHHHHHHHHHHHHhc--CCCCC---CCCchhHHHHHHHHHHHHHhhhh
Q 019191 19 NVISSVGIIMANKQLMSSSGYAFSFATTLTGFHFAVTALVGLVSNAT--GLSAS---KHVPLWELLWFSIVANMSIAGMN 93 (345)
Q Consensus 19 ~~~~s~~~~~~~K~~l~~~~~~~~~P~~l~~~r~~~~~~~l~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 93 (345)
++.+.....-.|-.+-+. .+.|+......+..+.+++..+... +.... .+.+|+.+ ..|++.........
T Consensus 13 aG~~l~~Q~~iN~qL~~~----~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~-~GG~lGa~~vt~s~ 87 (150)
T COG3238 13 AGALLPLQAAINGRLARY----LGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAW-IGGLLGAIFVTSSI 87 (150)
T ss_pred HhhhhhhHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHH-HccchhhhhhhhhH
Confidence 344444444555555554 3349999999999887766654332 22211 22344433 33455544444455
Q ss_pred hhhcccchhHHH-HHhhhhHHHHHHHHHHHh----ccccChhhhhhhhhhhhcceee
Q 019191 94 FSLMLNSVGFYQ-ISKLSMIPVVCVMEWILH----NKHYSKEVKMAVVVVVIGVGVC 145 (345)
Q Consensus 94 ~al~~~~~s~~~-~l~~~~p~~~~~l~~l~~----~e~~~~~~~~~~~l~~~Gv~l~ 145 (345)
.....+.++... ++.+.+-+..++++.+=. +++++..++.|+++.++|+.+.
T Consensus 88 ~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~ 144 (150)
T COG3238 88 LLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLA 144 (150)
T ss_pred HhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 555555555544 444455566666665432 3678999999999999995544
No 104
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=87.78 E-value=13 Score=34.14 Aligned_cols=141 Identities=9% Similarity=0.104 Sum_probs=71.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhhcc-CCcccccc-ccCchhHHH-HH
Q 019191 154 AKGFLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYL-NGKFITTY-KMTSGAILF-IF 230 (345)
Q Consensus 154 ~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~-~~ 230 (345)
..|+++..+++++.+.+.+-.||. | +.+....-..+..++ -+..|...... ..+..+-. ..+...+.. .+
T Consensus 6 i~Gii~h~iGg~~~~sfy~P~kkv-k--~WsWEs~Wlv~gi~s----wli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l 78 (344)
T PF06379_consen 6 ILGIIFHAIGGFASGSFYVPFKKV-K--GWSWESYWLVQGIFS----WLIVPWLWALLAIPDFFSIYSATPASTLFWTFL 78 (344)
T ss_pred HHHHHHHHHHHHHhhhhccchhhc-C--CccHHHHHHHHHHHH----HHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHH
Confidence 469999999999999999888864 3 233322222232222 22233221111 11111111 122222333 33
Q ss_pred HHHHHHHHHHHHHHHhhcccC-chhHhHHhhHHHHHHHHhhHhhcC-------CcccccchhhHHHHhHHHHHhhhhhhH
Q 019191 231 LSCALAVFCNVSQYLCIGRFS-ATSFQVLGHMKTVCVLTLGWLLFD-------SALTFKNISGMILAVVGMVIYSWAVEA 302 (345)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~pv~~~~~s~l~~~-------e~~s~~~iiG~~lii~G~~l~~~~~~~ 302 (345)
.+.+-|.. ....-..+++.+ +...++..-+..+++.++..++.+ ++-....++|.+++++|+.+..+....
T Consensus 79 ~G~lWGIG-gltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~ 157 (344)
T PF06379_consen 79 FGVLWGIG-GLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSM 157 (344)
T ss_pred HHHHHhcc-hhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHh
Confidence 33333322 121223455544 334455555555666555444433 223457889999999999998876543
No 105
>PRK02237 hypothetical protein; Provisional
Probab=83.60 E-value=6.8 Score=29.31 Aligned_cols=48 Identities=17% Similarity=0.260 Sum_probs=41.3
Q ss_pred chhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhhhh
Q 019191 252 ATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWA 299 (345)
Q Consensus 252 ~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~~~ 299 (345)
.-..+.++-+-.+.++++++.+-+++++...++|..++++|+.+..+.
T Consensus 59 GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~ 106 (109)
T PRK02237 59 GRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYA 106 (109)
T ss_pred hhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheec
Confidence 345667777888889999999999999999999999999999876554
No 106
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=82.81 E-value=12 Score=33.23 Aligned_cols=67 Identities=19% Similarity=0.268 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHhhcccCchhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhhh
Q 019191 232 SCALAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSW 298 (345)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~~ 298 (345)
-++|-.+.....|..+..++++...+..-.-.+++-+++..+++.+++..||+|+..+..|+.....
T Consensus 92 Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~ 158 (372)
T KOG3912|consen 92 PALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGS 158 (372)
T ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeee
Confidence 3334334444455557778899998888888999999999999999999999999999999887543
No 107
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=79.90 E-value=0.56 Score=41.13 Aligned_cols=94 Identities=9% Similarity=0.084 Sum_probs=0.0
Q ss_pred cchhHHHHHhhhhHHHHHHHH-HHHhccc-cChhhhhhhhhhhhcceeeeeccc--cccchhHHHHHHHHHHHHHHHHHH
Q 019191 99 NSVGFYQISKLSMIPVVCVME-WILHNKH-YSKEVKMAVVVVVIGVGVCTITDV--KVNAKGFLCACVAVLSTSLQQITI 174 (345)
Q Consensus 99 ~~~s~~~~l~~~~p~~~~~l~-~l~~~e~-~~~~~~~~~~l~~~Gv~l~~~~~~--~~~~~G~~~~l~a~~~~a~~~v~~ 174 (345)
.+-+-..++.+...+.++++- ..++|+| +-+.-.+|++++++-..+...... +.-+.|+++.+++.+..-....+.
T Consensus 47 ~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lLv~~L~tLtGQ~LF~Gi~~l~l~~lLaL~vW~Ym 126 (381)
T PF05297_consen 47 LTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLLVSMLWTLTGQTLFVGIVILFLCCLLALGVWFYM 126 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455555444443333 3344555 467777888877777666554432 333567665555444433333343
Q ss_pred HHHhhhcCCCHHHHHHhhh
Q 019191 175 GSLQKKYSIGSFELLSKTA 193 (345)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~ 193 (345)
. +.++++-+-++++.+..
T Consensus 127 ~-lLr~~GAs~WtiLaFcL 144 (381)
T PF05297_consen 127 W-LLRELGASFWTILAFCL 144 (381)
T ss_dssp -------------------
T ss_pred H-HHHHhhhHHHHHHHHHH
Confidence 2 56777778888776543
No 108
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=78.90 E-value=8.5 Score=28.73 Aligned_cols=50 Identities=22% Similarity=0.310 Sum_probs=42.4
Q ss_pred cCchhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhhhh
Q 019191 250 FSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWA 299 (345)
Q Consensus 250 ~~~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~~~ 299 (345)
...-..+.++-+-.+.++++++.+-+++++...++|..++++|+.+..+.
T Consensus 55 ~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~ 104 (107)
T PF02694_consen 55 AFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFA 104 (107)
T ss_pred cchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEec
Confidence 33445667778888999999999999999999999999999999886654
No 109
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=70.13 E-value=0.96 Score=39.35 Aligned_cols=71 Identities=24% Similarity=0.373 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHhhcccCchhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhhhhhhH
Q 019191 232 SCALAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAVEA 302 (345)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~~~~~~ 302 (345)
.++.-+-.|+....+.++++-+.......-..+...+++|++++.+-.+.++.|.++++.|+.+.......
T Consensus 84 la~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~ 154 (336)
T KOG2766|consen 84 LAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVH 154 (336)
T ss_pred eeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeec
Confidence 33444446666667789999999999999999999999999999999999999999999999987665443
No 110
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.29 E-value=4.1 Score=35.96 Aligned_cols=55 Identities=18% Similarity=0.337 Sum_probs=48.8
Q ss_pred HHHhhcccCchhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhh
Q 019191 243 QYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYS 297 (345)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~ 297 (345)
-..+++..+..+.-+-..+..++++++++.+++++=+..-..++.+|+.|..+-.
T Consensus 119 nnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGv 173 (347)
T KOG1442|consen 119 NNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGV 173 (347)
T ss_pred cceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheecc
Confidence 3467899999999999999999999999999999999999999999999987743
No 111
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=64.67 E-value=5.9 Score=29.46 Aligned_cols=29 Identities=3% Similarity=0.151 Sum_probs=25.3
Q ss_pred HHhhHhhcCCcccccchhhHHHHhHHHHH
Q 019191 267 LTLGWLLFDSALTFKNISGMILAVVGMVI 295 (345)
Q Consensus 267 ~~~s~l~~~e~~s~~~iiG~~lii~G~~l 295 (345)
..+++++++|++++.++.|..+++.++..
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence 45688899999999999999999888754
No 112
>PRK02237 hypothetical protein; Provisional
Probab=64.52 E-value=40 Score=25.32 Aligned_cols=39 Identities=8% Similarity=0.208 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHhccccChhhhhhhhhhhhcceeeeec
Q 019191 110 SMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTIT 148 (345)
Q Consensus 110 ~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l~~~~ 148 (345)
...+...+-.+.+-++|+++..++|..++++|+.++.+.
T Consensus 68 vyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~ 106 (109)
T PRK02237 68 VYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYA 106 (109)
T ss_pred HHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheec
Confidence 445556677778889999999999999999999877544
No 113
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=64.33 E-value=5.2 Score=35.83 Aligned_cols=72 Identities=14% Similarity=0.176 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCchhHhHHh-hHHHHHHHHhhHhhcCCccc--ccchhhHHHHhHHHHHhhh
Q 019191 226 ILFIFLSCALAVFCNVSQYLCIGRFSATSFQVLG-HMKTVCVLTLGWLLFDSALT--FKNISGMILAVVGMVIYSW 298 (345)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~pv~~~~~s~l~~~e~~s--~~~iiG~~lii~G~~l~~~ 298 (345)
+...+.+++.-.+.|++..+.+...+-+.+-.++ .+.-+.++++-++ ++.+.+ ..-+.|.+++++++.+-..
T Consensus 72 v~~A~aGGvvfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYf-ld~~~n~a~iLF~GV~cf~iAI~lga~ 146 (336)
T PF07168_consen 72 VLFAMAGGVVFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYF-LDPKINRAEILFPGVACFLIAIILGAA 146 (336)
T ss_pred HHHHHHhhHhhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeee-ccCCCCCceEEEccHHHHHHHHHHHHH
Confidence 3344445555445555554444433332221111 1122233444443 345554 2445577888887777543
No 114
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=58.91 E-value=86 Score=24.56 Aligned_cols=34 Identities=24% Similarity=0.367 Sum_probs=19.4
Q ss_pred HHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhh
Q 019191 263 TVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYS 297 (345)
Q Consensus 263 pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~ 297 (345)
-++-+..|.+.+++ --...++|..+.+.|+....
T Consensus 71 Glfyif~G~l~~~~-~~~~~i~g~~~~~~G~~~i~ 104 (136)
T PF08507_consen 71 GLFYIFLGTLCLGQ-SILSIIIGLLLFLVGVIYII 104 (136)
T ss_pred HHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHH
Confidence 34445566666665 33445566677777766443
No 115
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=58.82 E-value=11 Score=28.24 Aligned_cols=39 Identities=10% Similarity=0.278 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHHHhccccChhhhhhhhhhhhcceeeeec
Q 019191 110 SMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTIT 148 (345)
Q Consensus 110 ~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l~~~~ 148 (345)
...+...+-.+.+-++|+++..++|..++++|+.++.+.
T Consensus 66 vfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~ 104 (107)
T PF02694_consen 66 VFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFA 104 (107)
T ss_pred hHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEec
Confidence 455566677778889999999999999999999887654
No 116
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=57.71 E-value=1.6e+02 Score=27.21 Aligned_cols=215 Identities=13% Similarity=0.106 Sum_probs=105.7
Q ss_pred HHHHHHHHHhhhhhhhcccchhHHH--------HHhhhhHHHHH-HHHHHHhccccChhhhhhhhhhhhcceeeeec---
Q 019191 81 FSIVANMSIAGMNFSLMLNSVGFYQ--------ISKLSMIPVVC-VMEWILHNKHYSKEVKMAVVVVVIGVGVCTIT--- 148 (345)
Q Consensus 81 ~~~~~~~~~~~~~~al~~~~~s~~~--------~l~~~~p~~~~-~l~~l~~~e~~~~~~~~~~~l~~~Gv~l~~~~--- 148 (345)
.|++-.++...+-.+++|+..|..+ ++.++.|++.- -++- ++.++-....++|++++++|+++....
T Consensus 79 ~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~-l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~ 157 (344)
T PF06379_consen 79 FGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDE-LLATPSGQIVLLGVAVCLIGIAICGKAGSM 157 (344)
T ss_pred HHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccc-cccCCCchhhhhHHHHHHHHHHHHhHHHHh
Confidence 3444434444444477777766654 33333333210 0010 122333456789999999999986432
Q ss_pred -c-------ccccc-hhHHHHHHHHHHHHHHHHHHHHHh------hhcCCCHHHHHH----hhhHHHHHHHHHHHHHhhh
Q 019191 149 -D-------VKVNA-KGFLCACVAVLSTSLQQITIGSLQ------KKYSIGSFELLS----KTAPIQAVSLLVLGPFVDY 209 (345)
Q Consensus 149 -~-------~~~~~-~G~~~~l~a~~~~a~~~v~~~~~~------~~~~~~~~~~~~----~~~~~~~v~l~~~~~~~~~ 209 (345)
| .+++. .|.+.++.+.+..|..++-.+.-. .+.+.++..... ....-+.+.-+..+.....
T Consensus 158 Ke~~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~vvv~~GGf~tN~~yc~~~l~ 237 (344)
T PF06379_consen 158 KEKELGEEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVYVVVLWGGFITNLIYCLILLA 237 (344)
T ss_pred hhhhhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchhhhhhhhHHHHHHHHHHHHHh
Confidence 1 12333 699999999999999998776311 112233322111 1111122233333332211
Q ss_pred c-cCCcccccccc-Cc---hhHHHHHHHHHHHHHHHHHHHHhhcc----cCchhHhHHhhHHHHHHHHhhHhhcCCc---
Q 019191 210 Y-LNGKFITTYKM-TS---GAILFIFLSCALAVFCNVSQYLCIGR----FSATSFQVLGHMKTVCVLTLGWLLFDSA--- 277 (345)
Q Consensus 210 ~-~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~pv~~~~~s~l~~~e~--- 277 (345)
. -+......+.. .+ .-+...++.++.-|...+..-+.-.+ .+...-.+...+.-+++-+++.+ ++|-
T Consensus 238 ~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~lWy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwGl~-lkEWKg~ 316 (344)
T PF06379_consen 238 KNKNWSWKGDYSVAKPPLLKNYLFCALAGVLWYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWGLI-LKEWKGA 316 (344)
T ss_pred hcCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHH-HHHhccC
Confidence 0 00000001111 11 12223344444444433322222233 33566777778888888888875 6762
Q ss_pred ---ccccchhhHHHHhHHHHHhh
Q 019191 278 ---LTFKNISGMILAVVGMVIYS 297 (345)
Q Consensus 278 ---~s~~~iiG~~lii~G~~l~~ 297 (345)
.-..-++|.++++.++.+..
T Consensus 317 s~kt~~vl~~G~~vlI~s~~ivG 339 (344)
T PF06379_consen 317 SKKTIRVLVLGIAVLILSVVIVG 339 (344)
T ss_pred CcccHHHHHHHHHHHHHHHHHHh
Confidence 22344677777777776543
No 117
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=55.18 E-value=79 Score=30.56 Aligned_cols=24 Identities=8% Similarity=0.159 Sum_probs=19.7
Q ss_pred ccccchhhHHHHhHHHHHhhhhhh
Q 019191 278 LTFKNISGMILAVVGMVIYSWAVE 301 (345)
Q Consensus 278 ~s~~~iiG~~lii~G~~l~~~~~~ 301 (345)
++..|++...++++|++++.+.++
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~~ 277 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAPK 277 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhc
Confidence 789999999999999887765443
No 118
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=51.81 E-value=14 Score=28.56 Aligned_cols=7 Identities=14% Similarity=0.449 Sum_probs=0.0
Q ss_pred hHHhhhh
Q 019191 320 EEEIRLL 326 (345)
Q Consensus 320 ~~~~~~l 326 (345)
+++.||-
T Consensus 107 d~~~p~~ 113 (122)
T PF01102_consen 107 DTDVPLS 113 (122)
T ss_dssp -------
T ss_pred CCCCCcc
Confidence 4454553
No 119
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=51.44 E-value=42 Score=26.62 Aligned_cols=27 Identities=26% Similarity=0.135 Sum_probs=20.1
Q ss_pred hcccCchhHhHHhhHHHHHHHHhhHhh
Q 019191 247 IGRFSATSFQVLGHMKTVCVLTLGWLL 273 (345)
Q Consensus 247 ~~~~~~~~~~~~~~l~pv~~~~~s~l~ 273 (345)
+..-+....+.+-|+.|+++++.+.+.
T Consensus 69 i~EkslL~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 69 IEEKSLLKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888888888887776654
No 120
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=45.40 E-value=1.9e+02 Score=24.47 Aligned_cols=13 Identities=15% Similarity=0.204 Sum_probs=6.8
Q ss_pred HHHHHHHhccccC
Q 019191 116 CVMEWILHNKHYS 128 (345)
Q Consensus 116 ~~l~~l~~~e~~~ 128 (345)
++..+.++|+|++
T Consensus 190 ~~~~~~~lkkk~~ 202 (206)
T PF06570_consen 190 AFALRFYLKKKYN 202 (206)
T ss_pred HHHHHHHHHHHhC
Confidence 3344455666654
No 121
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=45.24 E-value=1.3e+02 Score=22.55 Aligned_cols=61 Identities=8% Similarity=-0.005 Sum_probs=37.5
Q ss_pred HHHHHhhhhhhhcccchhHHHHHhhh-hHHHHHHHHHHHhccccChhhhhhhhhhhhcceee
Q 019191 85 ANMSIAGMNFSLMLNSVGFYQISKLS-MIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVC 145 (345)
Q Consensus 85 ~~~~~~~~~~al~~~~~s~~~~l~~~-~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l~ 145 (345)
+++..-.+-.|.+..+.+---+++=. +-..-+.++.+++||++++....|.++...++.++
T Consensus 45 Y~l~VPANRiG~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 45 YCLQVPANRIGYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred HHHhCcchhhhccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 33333334445555444443344332 22334566788999999999999999887776553
No 122
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=44.56 E-value=35 Score=25.47 Aligned_cols=58 Identities=10% Similarity=0.183 Sum_probs=43.0
Q ss_pred HHhhhhhhhcccchhHHH-HHhhhhHHHHHHHHHHHhccccChhhhhhhhhhhhcceee
Q 019191 88 SIAGMNFSLMLNSVGFYQ-ISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVC 145 (345)
Q Consensus 88 ~~~~~~~al~~~~~s~~~-~l~~~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l~ 145 (345)
+...++.-++..+.+.+. +-.+++-.|+++.+..+..|-...+.+.|..+.++|+.++
T Consensus 65 gSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 65 GSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred hHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence 344555566666666554 4455677899999988877777889999999999998765
No 123
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=43.56 E-value=38 Score=26.52 Aligned_cols=46 Identities=17% Similarity=0.090 Sum_probs=24.9
Q ss_pred cccCchhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHH
Q 019191 248 GRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMV 294 (345)
Q Consensus 248 ~~~~~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~ 294 (345)
+..+...++.+.|+-|++.++.+.++. ..+...+.......++|..
T Consensus 63 ~~~~~~~aa~l~Y~lPll~li~g~~l~-~~~~~~e~~~~l~~l~~l~ 108 (135)
T PF04246_consen 63 PESSLLKAAFLVYLLPLLALIAGAVLG-SYLGGSELWAILGGLLGLA 108 (135)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 444555677777777888877776543 3333224333333333333
No 124
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.31 E-value=43 Score=24.57 Aligned_cols=41 Identities=12% Similarity=0.244 Sum_probs=31.4
Q ss_pred hHHhhHHHHHH----HHhhHhhcCCcccccchhhHHHHhHHHHHh
Q 019191 256 QVLGHMKTVCV----LTLGWLLFDSALTFKNISGMILAVVGMVIY 296 (345)
Q Consensus 256 ~~~~~l~pv~~----~~~s~l~~~e~~s~~~iiG~~lii~G~~l~ 296 (345)
+-...++.+++ ..+|.+.++|++.+.++.|..++..|+...
T Consensus 69 ~QLK~mQEVItL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 69 AQLKTMQEVITLAIFVPFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 34444555544 456899999999999999999999888764
No 125
>PRK14397 membrane protein; Provisional
Probab=40.77 E-value=2.1e+02 Score=24.63 Aligned_cols=15 Identities=20% Similarity=0.147 Sum_probs=8.4
Q ss_pred ccccCcccccccccc
Q 019191 328 EGVENTPVKDVELGE 342 (345)
Q Consensus 328 ~~~~~~~~~~~~~~~ 342 (345)
+|+.|++++|++..+
T Consensus 204 ~~~~~~~~~~~~~~~ 218 (222)
T PRK14397 204 AGAAPTANADAADAG 218 (222)
T ss_pred CCCCCcccCCHHHcc
Confidence 346666666665433
No 126
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=37.45 E-value=94 Score=26.96 Aligned_cols=70 Identities=14% Similarity=0.220 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCchhHhHHhhHHHHHHHHhhHhhcCC-------cccccchhhHHHHhHHHHHhh
Q 019191 228 FIFLSCALAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDS-------ALTFKNISGMILAVVGMVIYS 297 (345)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pv~~~~~s~l~~~e-------~~s~~~iiG~~lii~G~~l~~ 297 (345)
.+++..+++++.+...|.+.-....+.++=++...-.--.++.|.+.-+ .+....|++-+++++|.++.-
T Consensus 162 ~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLikwilIv~~sd~f~~y~n~q~wLwwi~~vlG~ll~l 238 (262)
T KOG4812|consen 162 IFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIKWILIVRFSDDFESYFNGQYWLWWIFLVLGLLLFL 238 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhheeeEEeecccccccccccchHHHHHHHHHHHHHHH
Confidence 3444445555544444433333333333333333222222333443222 255568999999999988744
No 127
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=36.12 E-value=59 Score=24.32 Aligned_cols=51 Identities=14% Similarity=0.098 Sum_probs=35.6
Q ss_pred HhhcccCchhHhHHhh-HHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHH
Q 019191 245 LCIGRFSATSFQVLGH-MKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVI 295 (345)
Q Consensus 245 ~~~~~~~~~~~~~~~~-l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l 295 (345)
+.+.+++-+.+..+.+ +.-.++.+.|..+-.|...-.-++|..+++.|+.+
T Consensus 71 ~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~L 122 (125)
T KOG4831|consen 71 LTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWL 122 (125)
T ss_pred HHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhh
Confidence 3456666555544433 35567788888755566788899999999999875
No 128
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=35.72 E-value=84 Score=25.36 Aligned_cols=24 Identities=25% Similarity=0.038 Sum_probs=13.5
Q ss_pred ccCchhHhHHhhHHHHHHHHhhHh
Q 019191 249 RFSATSFQVLGHMKTVCVLTLGWL 272 (345)
Q Consensus 249 ~~~~~~~~~~~~l~pv~~~~~s~l 272 (345)
.-.....+.+.|+-|++.++.+..
T Consensus 71 e~~llkaa~lvYllPLl~li~ga~ 94 (154)
T PRK10862 71 EGSLLRSALLVYMTPLVGLFLGAA 94 (154)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555666667766665543
No 129
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=35.15 E-value=1.3e+02 Score=26.95 Aligned_cols=55 Identities=13% Similarity=0.190 Sum_probs=45.1
Q ss_pred ccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhhhhhcceeeeeccccc
Q 019191 98 LNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITDVKV 152 (345)
Q Consensus 98 ~~~~s~~~~l~~~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~ 152 (345)
..++..+..+...--..|.+++++++.++++-....+..+.+.|+.+=.+++.+.
T Consensus 283 ~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~nk 337 (367)
T KOG1582|consen 283 LFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKRNK 337 (367)
T ss_pred HhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCCCC
Confidence 3456666677777778999999999999999999999999999999866666443
No 130
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=34.71 E-value=86 Score=26.66 Aligned_cols=46 Identities=24% Similarity=0.292 Sum_probs=27.0
Q ss_pred cCchhHhHHhhHHHHHHHHhhHhhcCCccc-ccchhhH-HHHhHHHHH
Q 019191 250 FSATSFQVLGHMKTVCVLTLGWLLFDSALT-FKNISGM-ILAVVGMVI 295 (345)
Q Consensus 250 ~~~~~~~~~~~l~pv~~~~~s~l~~~e~~s-~~~iiG~-~lii~G~~l 295 (345)
..+...+.+..+-|..+..+|..+-+--.. ..+++|. .++.+|...
T Consensus 31 ~~~l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~m 78 (206)
T TIGR02840 31 LSNLIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWI 78 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHH
Confidence 445556666667777777777765443323 3567765 445556554
No 131
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=34.70 E-value=2e+02 Score=21.56 Aligned_cols=40 Identities=13% Similarity=0.209 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHhccccChhhhhhhhhhhhcceeeeecc
Q 019191 110 SMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITD 149 (345)
Q Consensus 110 ~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l~~~~~ 149 (345)
.......+-.+.+-+.|+++..|.|..++++|+.++.+..
T Consensus 67 vyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~p 106 (109)
T COG1742 67 VYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGP 106 (109)
T ss_pred hHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCC
Confidence 3445556666777789999999999999999998877653
No 132
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=33.77 E-value=4.8e+02 Score=25.77 Aligned_cols=27 Identities=22% Similarity=0.113 Sum_probs=16.3
Q ss_pred hcccCchhHhHHhhHHHHHHHHhhHhh
Q 019191 247 IGRFSATSFQVLGHMKTVCVLTLGWLL 273 (345)
Q Consensus 247 ~~~~~~~~~~~~~~l~pv~~~~~s~l~ 273 (345)
..|..+....+.....|+-..++|.+.
T Consensus 341 ~GRv~si~~~~~~g~~~lGsll~G~la 367 (524)
T PF05977_consen 341 RGRVFSIYQMVFFGGMPLGSLLWGFLA 367 (524)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555566677777777754
No 133
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=33.44 E-value=28 Score=25.90 Aligned_cols=46 Identities=11% Similarity=0.241 Sum_probs=37.6
Q ss_pred hHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhhhh
Q 019191 254 SFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWA 299 (345)
Q Consensus 254 ~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~~~ 299 (345)
..+-++-+-.+.+..+.+.+=+..++...++|..++++|+.+..+.
T Consensus 60 vYAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~ 105 (109)
T COG1742 60 VYAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFG 105 (109)
T ss_pred HHHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeC
Confidence 3455666677788889999889999999999999999998776554
No 134
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=33.38 E-value=36 Score=26.16 Aligned_cols=27 Identities=19% Similarity=0.357 Sum_probs=14.9
Q ss_pred HhhcCCcccccchh----hHHHHhHHHHHhh
Q 019191 271 WLLFDSALTFKNIS----GMILAVVGMVIYS 297 (345)
Q Consensus 271 ~l~~~e~~s~~~ii----G~~lii~G~~l~~ 297 (345)
|++--|..|++.+. .++..++|+++..
T Consensus 25 W~fR~ED~tpWNysiL~Ls~vvlvi~~~LLg 55 (125)
T PF15048_consen 25 WFFRVEDATPWNYSILALSFVVLVISFFLLG 55 (125)
T ss_pred HheecCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 55556777766543 3344455666544
No 135
>COG1971 Predicted membrane protein [Function unknown]
Probab=31.83 E-value=56 Score=27.34 Aligned_cols=44 Identities=18% Similarity=0.298 Sum_probs=29.0
Q ss_pred chhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHH-HhHHHHH
Q 019191 252 ATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMIL-AVVGMVI 295 (345)
Q Consensus 252 ~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~l-ii~G~~l 295 (345)
+...+++..+.|+++...+.++-+-.-.+.+|+|.++ ++.|...
T Consensus 40 a~~fG~f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL~~lG~~m 84 (190)
T COG1971 40 ALIFGVFQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLLIILGLKM 84 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666677788888888876655566788777654 4445443
No 136
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=28.98 E-value=93 Score=20.28 Aligned_cols=22 Identities=23% Similarity=0.182 Sum_probs=13.9
Q ss_pred hhHHHHhHHHHHhhhhhhHHHh
Q 019191 284 SGMILAVVGMVIYSWAVEAEKQ 305 (345)
Q Consensus 284 iG~~lii~G~~l~~~~~~~~~~ 305 (345)
.-++++++|+++.|..-.|...
T Consensus 6 wlIIviVlgvIigNia~LK~sA 27 (55)
T PF11446_consen 6 WLIIVIVLGVIIGNIAALKYSA 27 (55)
T ss_pred hHHHHHHHHHHHhHHHHHHHhc
Confidence 3456777788887766554433
No 137
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=28.61 E-value=1.5e+02 Score=25.96 Aligned_cols=30 Identities=23% Similarity=0.549 Sum_probs=19.9
Q ss_pred HhhHhhcCCcccccchhhHHHHhHHHHHhh
Q 019191 268 TLGWLLFDSALTFKNISGMILAVVGMVIYS 297 (345)
Q Consensus 268 ~~s~l~~~e~~s~~~iiG~~lii~G~~l~~ 297 (345)
+.|.+.-+--+-..+.+|..+.++=+.+|-
T Consensus 176 lYGlli~D~~IaipN~iG~~l~~~QL~Ly~ 205 (243)
T KOG1623|consen 176 LYGLLIKDFFIAIPNVLGFLLGLIQLILYF 205 (243)
T ss_pred HHHHHhcCeEEEcccHHHHHHHHHHHHHhh
Confidence 445554223344677889999888888883
No 138
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=28.09 E-value=7.1e+02 Score=26.00 Aligned_cols=44 Identities=14% Similarity=0.037 Sum_probs=32.0
Q ss_pred hHHHHHhhhhHHHHHHHHHHHhccccChhhhhhhhhhhhcceee
Q 019191 102 GFYQISKLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVC 145 (345)
Q Consensus 102 s~~~~l~~~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l~ 145 (345)
+-+.++..+.|+-.+.++.....+|.+...+.+.+-.++|.+-+
T Consensus 11 gRa~il~~l~PFg~af~~a~~~~~~~~~~~~~~~~~~~~G~~t~ 54 (764)
T TIGR02865 11 GRAVIVSPMAPFGIAFLAAVLLAKKGGDKAFFSALGVLLGAISI 54 (764)
T ss_pred hHHHHhcCCCchHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh
Confidence 35567888999999999988877776555566666666676543
No 139
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=27.27 E-value=63 Score=21.91 Aligned_cols=21 Identities=14% Similarity=0.363 Sum_probs=15.3
Q ss_pred chhhHHHHhHHHHHhhhhhhH
Q 019191 282 NISGMILAVVGMVIYSWAVEA 302 (345)
Q Consensus 282 ~iiG~~lii~G~~l~~~~~~~ 302 (345)
-++++.++++|.++|....++
T Consensus 6 iLi~ICVaii~lIlY~iYnr~ 26 (68)
T PF05961_consen 6 ILIIICVAIIGLILYGIYNRK 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 356777888899998876543
No 140
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=27.24 E-value=3.3e+02 Score=24.17 Aligned_cols=22 Identities=14% Similarity=0.487 Sum_probs=18.5
Q ss_pred ccccchhhHHHHhHHHHHhhhh
Q 019191 278 LTFKNISGMILAVVGMVIYSWA 299 (345)
Q Consensus 278 ~s~~~iiG~~lii~G~~l~~~~ 299 (345)
+|..|+++..+++.|+.+..+.
T Consensus 235 ls~~Q~~sl~~i~~g~~~~~~~ 256 (269)
T PRK12437 235 LRIAQVISIPLIIIGIILIIYR 256 (269)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999998876443
No 141
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.40 E-value=2.3e+02 Score=21.38 Aligned_cols=35 Identities=17% Similarity=0.234 Sum_probs=14.8
Q ss_pred HHHHHhhHhhcC-CcccccchhhHHHHhHHHHHhhh
Q 019191 264 VCVLTLGWLLFD-SALTFKNISGMILAVVGMVIYSW 298 (345)
Q Consensus 264 v~~~~~s~l~~~-e~~s~~~iiG~~lii~G~~l~~~ 298 (345)
++++.+||+.=+ -.=+++.++...++-.|....+.
T Consensus 57 lVGa~iG~llD~~agTsPwglIv~lllGf~AG~lnv 92 (116)
T COG5336 57 LVGAGIGWLLDKFAGTSPWGLIVFLLLGFGAGVLNV 92 (116)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 344555554321 11334444544444444444443
No 142
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=25.97 E-value=46 Score=29.67 Aligned_cols=67 Identities=13% Similarity=0.367 Sum_probs=49.7
Q ss_pred HHHHHHHHHhhcc-cCchhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhhhhhhHH
Q 019191 237 VFCNVSQYLCIGR-FSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAVEAE 303 (345)
Q Consensus 237 ~~~~~~~~~~~~~-~~~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~~~~~~~ 303 (345)
+..+..-..+.+. ++-.-+-++..-.++..+..++++.+.+-+..|+....++-+|+++-+..+.++
T Consensus 75 F~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d 142 (330)
T KOG1583|consen 75 FIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKD 142 (330)
T ss_pred eeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcc
Confidence 3344444444443 444555566677788999999999999999999999999999999977655433
No 143
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=25.94 E-value=1.9e+02 Score=26.36 Aligned_cols=56 Identities=7% Similarity=0.233 Sum_probs=39.8
Q ss_pred HHHhhcccCchhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhhh
Q 019191 243 QYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSW 298 (345)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~~ 298 (345)
..+..+++.-+..++.....+++..++|.++-=|++++.-..=..+|-.|+++.++
T Consensus 101 SN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~ 156 (349)
T KOG1443|consen 101 SNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTY 156 (349)
T ss_pred ccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEe
Confidence 34557777777777777778888888888766687777766666666666666554
No 144
>PF10101 DUF2339: Predicted membrane protein (DUF2339); InterPro: IPR019286 This entry, found in various hypothetical bacterial proteins, has no known function.
Probab=25.67 E-value=7.5e+02 Score=25.44 Aligned_cols=160 Identities=12% Similarity=0.018 Sum_probs=0.0
Q ss_pred ChhhhhhhhhhhhcceeeeeccccccchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHh
Q 019191 128 SKEVKMAVVVVVIGVGVCTITDVKVNAKGFLCACVAVLSTSLQQITIGSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFV 207 (345)
Q Consensus 128 ~~~~~~~~~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~ 207 (345)
++.-++|++..++|++....-..+.++.|-..=+......+...+......++++.+.........-++...+..++...
T Consensus 4 n~l~~iG~~~l~lG~~fl~kya~~~g~l~p~~Rv~~g~~~g~~l~~~g~~l~~k~~~~~~~~L~g~G~a~ly~t~~aa~~ 83 (745)
T PF10101_consen 4 NWLVRIGILVLLLGVVFLLKYAIDAGWLGPAVRVALGAALGLALLAAGERLRRKGYRAFAQALAGGGIAVLYLTVFAAYH 83 (745)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcCcCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhccCCccccccccCchhHHHHHHHHHHHHHHHHHHHHhhcccCchhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHH
Q 019191 208 DYYLNGKFITTYKMTSGAILFIFLSCALAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMI 287 (345)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~ 287 (345)
.....++.. .....++.+........+--+..=+....+-++..|+.. -+++.+.....+..
T Consensus 84 ~y~l~~~~~-----------af~~~~~v~~~~~~la~r~~~~~la~l~l~gg~~aP~l~-------~~~~~~~~~L~~Y~ 145 (745)
T PF10101_consen 84 LYGLIPPPV-----------AFALLALVTAAAVALALRYDSPALAVLALLGGFLAPFLV-------STGSGNPVFLFGYL 145 (745)
T ss_pred HHHhcCHHH-----------HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhc-------CCCCCcHHHHHHHH
Q ss_pred HHhHHHHHhhhhhhHHHh
Q 019191 288 LAVVGMVIYSWAVEAEKQ 305 (345)
Q Consensus 288 lii~G~~l~~~~~~~~~~ 305 (345)
.++.+..+....+++-+.
T Consensus 146 ~ll~~~~l~v~~~~~W~~ 163 (745)
T PF10101_consen 146 LLLNAGALAVARRRRWRW 163 (745)
T ss_pred HHHHHHHHHHHHHhchHH
No 145
>PF03631 Virul_fac_BrkB: Virulence factor BrkB; InterPro: IPR017039 This entry represents the uncharacterised protein family UPF0761. It includes the E. coli gene product of yihY, and was previously thought to be a family of tRNA-processing ribonuclease BN proteins []. This has been shown to be incorrect [].; GO: 0004540 ribonuclease activity
Probab=25.33 E-value=4.5e+02 Score=22.80 Aligned_cols=49 Identities=10% Similarity=-0.004 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHH--HHhcCCCCCCCCchhHHHHHHHHHHHHHhhhhh
Q 019191 46 TLTGFHFAVTALVGLV--SNATGLSASKHVPLWELLWFSIVANMSIAGMNF 94 (345)
Q Consensus 46 ~l~~~r~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (345)
.....|..+..++... ....+..++++.+++..++.+++..+......+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~y~~~p~~~~~~~~~~~Ga~~~~~~~~~~~~ 210 (260)
T PF03631_consen 160 LWNLIRWLVSFLLLFLLFFLLYRFLPNRRVRWRAALPGALFAAVLWFLLSY 210 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHHHHHHH
Confidence 4677777655444332 222344555677888888877776665554444
No 146
>PRK09776 putative diguanylate cyclase; Provisional
Probab=23.05 E-value=9.6e+02 Score=25.80 Aligned_cols=21 Identities=0% Similarity=0.172 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 019191 156 GFLCACVAVLSTSLQQITIGS 176 (345)
Q Consensus 156 G~~~~l~a~~~~a~~~v~~~~ 176 (345)
...+++++.+...+...+.++
T Consensus 71 ~~~~~~~~~~~~~~~~~ll~~ 91 (1092)
T PRK09776 71 NLTWTTINLVEAVVGAVLLRK 91 (1092)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555444444444444
No 147
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=21.78 E-value=5.3e+02 Score=24.78 Aligned_cols=59 Identities=12% Similarity=0.134 Sum_probs=34.6
Q ss_pred HHhccccChhhhhhh--hhhhhcceeeeeccccccchhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 019191 121 ILHNKHYSKEVKMAV--VVVVIGVGVCTITDVKVNAKGFLCACVAVLSTSLQQITIGSLQKKY 181 (345)
Q Consensus 121 l~~~e~~~~~~~~~~--~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~ 181 (345)
++-|.|+++.|.+-+ .+++.=+.+++.++. --++..+.+.|+.+-.+-..+.+...+..
T Consensus 317 ~~~~~~iHpiQY~LVGlAl~lFYlLLLSlSEh--i~F~~AYliAa~a~i~Li~~Y~~~vl~~~ 377 (430)
T PF06123_consen 317 LLSKLRIHPIQYLLVGLALVLFYLLLLSLSEH--IGFNLAYLIAALACIGLISLYLSSVLKSW 377 (430)
T ss_pred HHhcCcccHHHHHHHHHHHHHHHHHHHHHHhh--hchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344567788776433 333333334444442 22556677777777777777888777643
No 148
>PRK10666 ammonium transporter; Provisional
Probab=21.43 E-value=7.3e+02 Score=23.83 Aligned_cols=52 Identities=13% Similarity=-0.079 Sum_probs=23.6
Q ss_pred HhccccChhhhhhhhhhhhcceeeeeccccc-cchhHHHHHHHHHHHHHHHHHHH
Q 019191 122 LHNKHYSKEVKMAVVVVVIGVGVCTITDVKV-NAKGFLCACVAVLSTSLQQITIG 175 (345)
Q Consensus 122 ~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~-~~~G~~~~l~a~~~~a~~~v~~~ 175 (345)
+.+.|++......-+ ++|.+-++..-.-. .+..++.++++++..-......|
T Consensus 273 ~~~gk~~~~~~~nG~--LaGLVaITa~a~~v~p~~A~iiG~vag~v~~~~~~~l~ 325 (428)
T PRK10666 273 ALRGKPSLLGACSGA--IAGLVGVTPACGYVGVGGALIIGVVAGLAGLWGVTMLK 325 (428)
T ss_pred HHhCCCCHHHHHHHH--hhhhhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566655443322 24443333322222 34456666666665544333344
No 149
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.38 E-value=3.5e+02 Score=20.03 Aligned_cols=32 Identities=6% Similarity=-0.008 Sum_probs=26.4
Q ss_pred HHHHHHHHHhccccChhhhhhhhhhhhcceee
Q 019191 114 VVCVMEWILHNKHYSKEVKMAVVVVVIGVGVC 145 (345)
Q Consensus 114 ~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l~ 145 (345)
+-+.++.+.+||++++..+.+..+...|+.++
T Consensus 82 iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 82 IFVPFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 33557888999999999999999888887654
No 150
>KOG1608 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.82 E-value=3.4e+02 Score=24.48 Aligned_cols=19 Identities=16% Similarity=0.130 Sum_probs=10.3
Q ss_pred hhcccccCccccccccccc
Q 019191 325 LLKEGVENTPVKDVELGET 343 (345)
Q Consensus 325 ~l~~~~~~~~~~~~~~~~~ 343 (345)
.-.+++.++..+|-+++-+
T Consensus 352 ~~~ng~~~~~~~dsp~~~K 370 (374)
T KOG1608|consen 352 NKENGVLTSNRQDSPSDKK 370 (374)
T ss_pred ccccCccccccCCCCCchh
Confidence 3344555666666665544
No 151
>KOG2822 consensus Sphingoid base-phosphate phosphatase [Lipid transport and metabolism]
Probab=20.78 E-value=2.4e+02 Score=26.43 Aligned_cols=53 Identities=4% Similarity=-0.060 Sum_probs=30.5
Q ss_pred hhcccchhHHHHHhhhhHHHHHHHHHHHhccccChh-hhhhhhhhhhcceeeeecc
Q 019191 95 SLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKE-VKMAVVVVVIGVGVCTITD 149 (345)
Q Consensus 95 al~~~~~s~~~~l~~~~p~~~~~l~~l~~~e~~~~~-~~~~~~l~~~Gv~l~~~~~ 149 (345)
.-.|--||+.++-....++.- +-.+..-|+.+.. ++.++.++..=.+.+..+.
T Consensus 154 ~~EYG~PStHt~natais~~~--~~~ls~~d~~s~p~~~lgl~lv~~y~~lv~lgR 207 (407)
T KOG2822|consen 154 TKEYGMPSTHTMNATAISFYF--FLVLSTMDRESYPIQYLGLSLVLLYYALVCLGR 207 (407)
T ss_pred hhhhCCCcchhhhhhHHHHHH--HHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555554443333322 3344456777776 8888887777666665553
No 152
>PRK00052 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=20.47 E-value=6e+02 Score=22.48 Aligned_cols=22 Identities=27% Similarity=0.687 Sum_probs=18.8
Q ss_pred ccccchhhHHHHhHHHHHhhhh
Q 019191 278 LTFKNISGMILAVVGMVIYSWA 299 (345)
Q Consensus 278 ~s~~~iiG~~lii~G~~l~~~~ 299 (345)
+|..|+++..+++.|+.+.-+.
T Consensus 237 ls~~Q~isl~~~~~gi~~~~~~ 258 (269)
T PRK00052 237 LTMGQILSIPMILLGIILLIWA 258 (269)
T ss_pred cCHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999998876544
No 153
>PF15102 TMEM154: TMEM154 protein family
Probab=20.46 E-value=49 Score=26.35 Aligned_cols=23 Identities=4% Similarity=0.075 Sum_probs=12.1
Q ss_pred hhhHHHHhHHHHHhhhhhhHHHh
Q 019191 283 ISGMILAVVGMVIYSWAVEAEKQ 305 (345)
Q Consensus 283 iiG~~lii~G~~l~~~~~~~~~~ 305 (345)
+++.+|++..++++.+.++++.|
T Consensus 66 VLLvlLLl~vV~lv~~~kRkr~K 88 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYYKRKRTK 88 (146)
T ss_pred HHHHHHHHHHHHheeEEeecccC
Confidence 44445555566666555544433
No 154
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.37 E-value=4.2e+02 Score=24.70 Aligned_cols=75 Identities=11% Similarity=-0.002 Sum_probs=37.4
Q ss_pred HHHHHhhccCCcccchhhHHHHHHHHHHHHHHHHH-Hh--cCCCCCCCCchhHHHHHHHHHHHHHhhhhhhhcccchhHH
Q 019191 28 MANKQLMSSSGYAFSFATTLTGFHFAVTALVGLVS-NA--TGLSASKHVPLWELLWFSIVANMSIAGMNFSLMLNSVGFY 104 (345)
Q Consensus 28 ~~~K~~l~~~~~~~~~P~~l~~~r~~~~~~~l~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~s~~ 104 (345)
.+.|.+.++ .. -++.....+.++.++...+ .. +-+..+++-++.+-+..=.+..++..+.+++.+...++.+
T Consensus 206 Y~i~ql~~n----Lq-~Iwieyr~yvLgYvlivgliSfaVCYK~GPp~d~RS~~ilmWtLqli~lvl~Yfsvq~p~~a~A 280 (452)
T KOG3817|consen 206 YVIKQLADN----LQ-LIWIEYRDYVLGYVLIVGLISFAVCYKIGPPKDPRSQTILMWTLQLIGLVLAYFSVQHPSAAIA 280 (452)
T ss_pred HHHHHHHHH----HH-HHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCcchhhHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 446777777 66 6777777777776543321 11 1111122222222222223344455556677777666664
Q ss_pred HHH
Q 019191 105 QIS 107 (345)
Q Consensus 105 ~~l 107 (345)
.+|
T Consensus 281 ~iI 283 (452)
T KOG3817|consen 281 AII 283 (452)
T ss_pred HHH
Confidence 433
No 155
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=20.20 E-value=60 Score=19.93 Aligned_cols=17 Identities=12% Similarity=0.225 Sum_probs=8.3
Q ss_pred ccccchhhHHHHhHHHH
Q 019191 278 LTFKNISGMILAVVGMV 294 (345)
Q Consensus 278 ~s~~~iiG~~lii~G~~ 294 (345)
++|...+-.+++++|++
T Consensus 2 p~wlt~iFsvvIil~If 18 (49)
T PF11044_consen 2 PTWLTTIFSVVIILGIF 18 (49)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 34444455555555543
Done!