Query 019191
Match_columns 345
No_of_seqs 147 out of 1331
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 12:18:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019191.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019191hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.7 2.7E-08 9.2E-13 77.7 6.9 66 235-300 39-105 (137)
2 3b5d_A Multidrug transporter E 98.4 8.5E-07 2.9E-11 66.7 7.4 70 80-149 35-105 (110)
3 2i68_A Protein EMRE; transmemb 98.3 4.8E-07 1.7E-11 70.5 4.8 69 80-148 35-104 (137)
4 3b5d_A Multidrug transporter E 98.1 7.7E-06 2.6E-10 61.4 7.6 61 239-299 43-104 (110)
5 3l1l_A Arginine/agmatine antip 39.0 49 0.0017 29.9 6.1 23 281-303 409-431 (445)
6 2jo1_A Phospholemman; FXYD1, N 25.6 1.3E+02 0.0046 19.6 4.5 18 283-300 22-39 (72)
7 2jp3_A FXYD domain-containing 19.5 1.3E+02 0.0046 19.4 3.6 20 283-302 23-42 (67)
8 2hac_A T-cell surface glycopro 14.7 1.7E+02 0.0059 16.0 2.8 25 106-130 7-31 (33)
9 4djk_A Probable glutamate/gamm 11.0 8.2E+02 0.028 22.0 8.4 122 224-345 369-511 (511)
10 3gia_A Uncharacterized protein 10.7 8.2E+02 0.028 21.5 8.3 152 157-324 277-443 (444)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.70 E-value=2.7e-08 Score=77.66 Aligned_cols=66 Identities=17% Similarity=0.197 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhhcccCchhHhHH-hhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhhhhh
Q 019191 235 LAVFCNVSQYLCIGRFSATSFQVL-GHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAV 300 (345)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~-~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~~~~ 300 (345)
+....+++..+++++.++..+..+ ..+.|++++++|+++++|++|+.+++|.+++++|+++.+..+
T Consensus 39 ~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 333444555678999999999888 899999999999999999999999999999999999987543
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.38 E-value=8.5e-07 Score=66.67 Aligned_cols=70 Identities=11% Similarity=0.114 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhhhhhhhcccchhHHHHH-hhhhHHHHHHHHHHHhccccChhhhhhhhhhhhcceeeeecc
Q 019191 80 WFSIVANMSIAGMNFSLMLNSVGFYQIS-KLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTITD 149 (345)
Q Consensus 80 ~~~~~~~~~~~~~~~al~~~~~s~~~~l-~~~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l~~~~~ 149 (345)
...+++..++.+...++++.|.+.+..+ .+..|+++.+++++++||++++.|+.|++++++|+.+....+
T Consensus 35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3344577788888999999999999988 899999999999999999999999999999999998876543
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.32 E-value=4.8e-07 Score=70.52 Aligned_cols=69 Identities=12% Similarity=0.113 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhhhhhhhcccchhHHHHH-hhhhHHHHHHHHHHHhccccChhhhhhhhhhhhcceeeeec
Q 019191 80 WFSIVANMSIAGMNFSLMLNSVGFYQIS-KLSMIPVVCVMEWILHNKHYSKEVKMAVVVVVIGVGVCTIT 148 (345)
Q Consensus 80 ~~~~~~~~~~~~~~~al~~~~~s~~~~l-~~~~p~~~~~l~~l~~~e~~~~~~~~~~~l~~~Gv~l~~~~ 148 (345)
...+++.+++.+.+.++++++++.+..+ .++.|++++++++++++|++++.+++|++++++|+.++...
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3345577788899999999999999888 89999999999999999999999999999999999987543
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.13 E-value=7.7e-06 Score=61.40 Aligned_cols=61 Identities=18% Similarity=0.251 Sum_probs=53.4
Q ss_pred HHHHHHHhhcccCchhHhHH-hhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhhhh
Q 019191 239 CNVSQYLCIGRFSATSFQVL-GHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWA 299 (345)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~-~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~~~ 299 (345)
.++....++++.+...+..+ ..+.|+.+.+.|++++||++|+.+++|..+++.|+.+.+..
T Consensus 43 ~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 43 SFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 33444567999999999777 89999999999999999999999999999999999987653
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=39.02 E-value=49 Score=29.93 Aligned_cols=23 Identities=9% Similarity=0.112 Sum_probs=16.7
Q ss_pred cchhhHHHHhHHHHHhhhhhhHH
Q 019191 281 KNISGMILAVVGMVIYSWAVEAE 303 (345)
Q Consensus 281 ~~iiG~~lii~G~~l~~~~~~~~ 303 (345)
..+.|.++++.|+.+|.+.++++
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~~ 431 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMYALNYNRL 431 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Confidence 45568888889999888765443
No 6
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=25.63 E-value=1.3e+02 Score=19.62 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=10.8
Q ss_pred hhhHHHHhHHHHHhhhhh
Q 019191 283 ISGMILAVVGMVIYSWAV 300 (345)
Q Consensus 283 iiG~~lii~G~~l~~~~~ 300 (345)
+++.++.++|+++....+
T Consensus 22 ifA~vLfi~GI~iilS~K 39 (72)
T 2jo1_A 22 VIAGILFILGILIVLSRR 39 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCc
Confidence 445566677777655444
No 7
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=19.51 E-value=1.3e+02 Score=19.41 Aligned_cols=20 Identities=20% Similarity=0.245 Sum_probs=11.7
Q ss_pred hhhHHHHhHHHHHhhhhhhH
Q 019191 283 ISGMILAVVGMVIYSWAVEA 302 (345)
Q Consensus 283 iiG~~lii~G~~l~~~~~~~ 302 (345)
+++.++.++|+++..-.+-|
T Consensus 23 ifA~vLfi~GI~iilS~kcr 42 (67)
T 2jp3_A 23 IFGGLLCIAGIALALSGKCK 42 (67)
T ss_dssp HHHHHHHHHHHHHHHTTHHH
T ss_pred hhHHHHHHHHHHHHHcCccc
Confidence 44556677777766544433
No 8
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=14.67 E-value=1.7e+02 Score=15.96 Aligned_cols=25 Identities=4% Similarity=0.086 Sum_probs=14.5
Q ss_pred HHhhhhHHHHHHHHHHHhccccChh
Q 019191 106 ISKLSMIPVVCVMEWILHNKHYSKE 130 (345)
Q Consensus 106 ~l~~~~p~~~~~l~~l~~~e~~~~~ 130 (345)
++-...-+.-.++..++.++|+++.
T Consensus 7 iLDgiL~iYgii~T~Ly~R~K~~~~ 31 (33)
T 2hac_A 7 LLDGILFIYGVILTALFLRVKFSRS 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred ehHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3333444455566667778877653
No 9
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=11.03 E-value=8.2e+02 Score=21.98 Aligned_cols=122 Identities=11% Similarity=0.086 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcccCc---------------hhHhHHhhHHHHHHHHhhHhhcCCcccccc------
Q 019191 224 GAILFIFLSCALAVFCNVSQYLCIGRFSA---------------TSFQVLGHMKTVCVLTLGWLLFDSALTFKN------ 282 (345)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~------ 282 (345)
.............+..........++..+ ...+.+..+--++..+...+=...+.+...
T Consensus 369 ~l~~~~~~~~~~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 448 (511)
T 4djk_A 369 IALALTVVIYLCAYFMLFIGYIVLVLKHPDLKRTFNIPGGKGVKLVVAIVGLLTSIMAFIVSFLPPDNIQGDSTDMYVEL 448 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCCSCCCSSTTHHHHHHHHHHHHHHHHHHHHTTCCCSCSTTCCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeecCCCchHHHHHHHHHHHHHHHHHHeeeeCCccccCCchHHHHHH
Q ss_pred hhhHHHHhHHHHHhhhhhhHHHhhccCCCCCCCCCchhHHhhhhcccccCccccccccccccC
Q 019191 283 ISGMILAVVGMVIYSWAVEAEKQRNAKTSPQSKNSLTEEEIRLLKEGVENTPVKDVELGETKE 345 (345)
Q Consensus 283 iiG~~lii~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 345 (345)
+.+..+++.++.++.+.+++++.........++...++.+..-.....+..++.+...+|.++
T Consensus 449 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 511 (511)
T 4djk_A 449 LVVSFLVVLALPFILYAVHDRKGKANTGVTLEPINSQNAPKGHFFLHPRARSPHYIVMNDKKH 511 (511)
T ss_dssp HHHHHHHHHHHHHHHHHCC------------------------TTSCTTTCCC----------
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcccccccchhhhcccCcccccCCccccCCeeeccccccC
No 10
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=10.67 E-value=8.2e+02 Score=21.49 Aligned_cols=152 Identities=16% Similarity=0.111 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH---------------HHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhhccCCcccccccc
Q 019191 157 FLCACVAVLSTSLQQITI---------------GSLQKKYSIGSFELLSKTAPIQAVSLLVLGPFVDYYLNGKFITTYKM 221 (345)
Q Consensus 157 ~~~~l~a~~~~a~~~v~~---------------~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~ 221 (345)
.+..+++.++.....+.. |.+.|..+..|......+...+.+..+.. +.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~f~~~~~~~P~~a~~~~~~~~~~~~~~~----------------~~ 340 (444)
T 3gia_A 277 SIGALFSISSAMNATIYGGANVAYSLAKDGELPEFFERKVWFKSTEGLYITSALGVLFALLF----------------NM 340 (444)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHHHHHHHSSCCSSCCTTSCCSCTHHHHHHHHHHHHHHHHS----------------CH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHhCCCCCCCcHHHHHHHHHHHHHHHHc----------------CH
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhcccCchhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhhhhhh
Q 019191 222 TSGAILFIFLSCALAVFCNVSQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYSWAVE 301 (345)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~~~~~ 301 (345)
+...-.......+.-...+....+.-++.+.........+--............-.-+...+.....+..++.++.+.-+
T Consensus 341 ~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (444)
T 3gia_A 341 EGVASITSAVFMVIYLFVILSHYILIDEVGGRKEIVIFSFIVVLGVFLLLLYYQWITNRFVFYGIIATFIGVLIFEIIYR 420 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhccCCCCCCCCCchhHHhh
Q 019191 302 AEKQRNAKTSPQSKNSLTEEEIR 324 (345)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~ 324 (345)
+.++++.+.....+..++++.+|
T Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~ 443 (444)
T 3gia_A 421 KVTKRTFSNNMYVKSLESSGLVP 443 (444)
T ss_dssp HHHCCCCCGGGTTTC--------
T ss_pred HhccCCCcCceeeeehhhcCCCC
Done!