Query 019191
Match_columns 345
No_of_seqs 147 out of 1331
Neff 9.4
Searched_HMMs 13730
Date Mon Mar 25 12:18:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019191.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019191hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fftb2 f.17.2.1 (B:27-117) Cy 14.5 43 0.0031 21.5 2.2 20 287-306 29-48 (91)
2 d1u7ga_ f.44.1.1 (A:) Ammonium 11.8 3.6E+02 0.026 21.9 18.8 83 117-204 244-328 (383)
3 d2e74g1 f.23.26.1 (G:9-35) Pet 11.4 88 0.0064 14.6 2.8 17 155-171 3-19 (27)
4 d1iwga7 f.35.1.1 (A:7-37,A:331 10.6 2.8E+02 0.021 19.9 7.0 50 248-297 61-110 (199)
5 d2axtt1 f.23.34.1 (T:1-30) Pho 7.2 1.5E+02 0.011 14.0 2.1 14 115-128 15-28 (30)
6 d2axtl1 f.23.31.1 (L:1-37) Pho 3.9 3E+02 0.022 13.8 2.6 16 155-170 19-34 (37)
7 d3dtub2 f.17.2.1 (B:30-129) Ba 3.6 3.3E+02 0.024 17.1 2.7 18 286-303 39-56 (100)
8 d2r6gf1 e.70.1.1 (F:13-260) Ma 3.5 8.1E+02 0.059 18.2 5.8 54 77-134 4-57 (248)
9 d2oara1 f.16.1.1 (A:10-118) Ga 3.3 4.2E+02 0.031 17.1 3.0 8 320-327 99-106 (109)
10 d1ppjg_ f.23.13.1 (G:) Ubiquin 3.0 4.3E+02 0.031 15.9 2.6 18 290-307 53-70 (75)
No 1
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=14.53 E-value=43 Score=21.50 Aligned_cols=20 Identities=5% Similarity=-0.047 Sum_probs=12.0
Q ss_pred HHHhHHHHHhhhhhhHHHhh
Q 019191 287 ILAVVGMVIYSWAVEAEKQR 306 (345)
Q Consensus 287 ~lii~G~~l~~~~~~~~~~~ 306 (345)
.+.+.|.++|..-|.|++++
T Consensus 29 ~v~V~~~~~~~~~ryR~~~~ 48 (91)
T d1fftb2 29 VIPAILMAVGFAWKYRASNK 48 (91)
T ss_dssp TTHHHHHHHTTTTTTTTSTT
T ss_pred HHHHHHHHHhhheeeeccCC
Confidence 44566777777666554443
No 2
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=11.81 E-value=3.6e+02 Score=21.89 Aligned_cols=83 Identities=11% Similarity=-0.031 Sum_probs=35.3
Q ss_pred HHHHHHhccccChhhhhhhhhhhhcceeeeeccccccch-hHHHHHHHHHHHH-HHHHHHHHHhhhcCCCHHHHHHhhhH
Q 019191 117 VMEWILHNKHYSKEVKMAVVVVVIGVGVCTITDVKVNAK-GFLCACVAVLSTS-LQQITIGSLQKKYSIGSFELLSKTAP 194 (345)
Q Consensus 117 ~l~~l~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~-G~~~~l~a~~~~a-~~~v~~~~~~~~~~~~~~~~~~~~~~ 194 (345)
.+...+.++|++......-. +.|++-++-.....+.+ ..+.+.++.+..- .+..+.+|+ | -.|+.........
T Consensus 244 ~~~~~~~~~k~~~~~~~nG~--LaGLVaita~~~~v~p~~A~~iG~i~g~i~~~~~~~l~~~~-~--iDD~~~~~~vHg~ 318 (383)
T d1u7ga_ 244 IFGEWALRGLPSLLGACSGA--IAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLL-R--VDDPCDVFGVHGV 318 (383)
T ss_dssp HHHHHHHHSSCCHHHHHHHH--HHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH-C--SCCGGGHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHh--hhhhhhcccCccccchhhHHHHHhhccHHHHHHHHHHHhhc-c--cccccceEeehhh
Confidence 33333456677666544322 23444333332222333 4555555544433 333333332 2 1345555544444
Q ss_pred HHHHHHHHHH
Q 019191 195 IQAVSLLVLG 204 (345)
Q Consensus 195 ~~~v~l~~~~ 204 (345)
.+.+..+...
T Consensus 319 ~Gi~G~l~~g 328 (383)
T d1u7ga_ 319 CGIVGCIMTG 328 (383)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 4444444333
No 3
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=11.45 E-value=88 Score=14.55 Aligned_cols=17 Identities=24% Similarity=0.171 Sum_probs=12.8
Q ss_pred hhHHHHHHHHHHHHHHH
Q 019191 155 KGFLCACVAVLSTSLQQ 171 (345)
Q Consensus 155 ~G~~~~l~a~~~~a~~~ 171 (345)
.|.+..-++.+.+|.|.
T Consensus 3 lgli~~tl~glf~aayq 19 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHH
Confidence 57777777888888765
No 4
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=10.55 E-value=2.8e+02 Score=19.91 Aligned_cols=50 Identities=18% Similarity=0.095 Sum_probs=32.1
Q ss_pred cccCchhHhHHhhHHHHHHHHhhHhhcCCcccccchhhHHHHhHHHHHhh
Q 019191 248 GRFSATSFQVLGHMKTVCVLTLGWLLFDSALTFKNISGMILAVVGMVIYS 297 (345)
Q Consensus 248 ~~~~~~~~~~~~~l~pv~~~~~s~l~~~e~~s~~~iiG~~lii~G~~l~~ 297 (345)
+..-+.........-.+........+++.+++.....+..+++....-+.
T Consensus 61 rs~~~~li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi~vd~~ 110 (199)
T d1iwga7 61 QNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDA 110 (199)
T ss_dssp CCTTTTTHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhheeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHHHhcccH
Confidence 44444444444555555556666777888999888888877766555443
No 5
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=7.23 E-value=1.5e+02 Score=14.02 Aligned_cols=14 Identities=7% Similarity=-0.097 Sum_probs=7.9
Q ss_pred HHHHHHHHhccccC
Q 019191 115 VCVMEWILHNKHYS 128 (345)
Q Consensus 115 ~~~l~~l~~~e~~~ 128 (345)
..++-.++++|+++
T Consensus 15 ~lfffaiffreppr 28 (30)
T d2axtt1 15 ALFFFAIFFREPPR 28 (30)
T ss_dssp HHHHHHHHTSCCCC
T ss_pred HHHHHHHHhcCCCC
Confidence 33444556777764
No 6
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.90 E-value=3e+02 Score=13.80 Aligned_cols=16 Identities=31% Similarity=0.150 Sum_probs=10.7
Q ss_pred hhHHHHHHHHHHHHHH
Q 019191 155 KGFLCACVAVLSTSLQ 170 (345)
Q Consensus 155 ~G~~~~l~a~~~~a~~ 170 (345)
+|.++.+.-++.++-|
T Consensus 19 ~GlLlifvl~vLFssY 34 (37)
T d2axtl1 19 LGLLLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6777777666666655
No 7
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.57 E-value=3.3e+02 Score=17.07 Aligned_cols=18 Identities=17% Similarity=0.181 Sum_probs=10.1
Q ss_pred HHHHhHHHHHhhhhhhHH
Q 019191 286 MILAVVGMVIYSWAVEAE 303 (345)
Q Consensus 286 ~~lii~G~~l~~~~~~~~ 303 (345)
..+++.|+..|...+.|.
T Consensus 39 I~~~V~~~l~~~~~~~r~ 56 (100)
T d3dtub2 39 ITIFVTLLILYAVWRFHE 56 (100)
T ss_dssp HHHHHHHHHHHHHHHHBT
T ss_pred HHHHHHHHHHHHhhhhhc
Confidence 344566667666555443
No 8
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=3.54 E-value=8.1e+02 Score=18.19 Aligned_cols=54 Identities=6% Similarity=-0.087 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhcccchhHHHHHhhhhHHHHHHHHHHHhccccChhhhhh
Q 019191 77 ELLWFSIVANMSIAGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKMA 134 (345)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~al~~~~~s~~~~l~~~~p~~~~~l~~l~~~e~~~~~~~~~ 134 (345)
+|..++++..+..+.....+..-+-..+. ..-+.+.++.++++.+|.-+.|++-
T Consensus 4 K~~ll~l~~a~~~~~~~~~~~~~~~~~a~----~~~~~~~~~~~vy~s~r~~p~kyi~ 57 (248)
T d2r6gf1 4 KWSVLGLLGLLVGYLVVLMYAQGEYLFAI----TTLILSSAGLYIFANRKAYAWRYVY 57 (248)
T ss_dssp THHHHHHHHHHHHHTHHHHHGGGCHHHHH----HHHHHHHHHHHHHSSSCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHHHH----HHHHHHHheEEEEEccCccceehhh
Confidence 45666666655544433333322222222 3344566666777888877777654
No 9
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=3.25 E-value=4.2e+02 Score=17.11 Aligned_cols=8 Identities=25% Similarity=0.563 Sum_probs=3.6
Q ss_pred hHHhhhhc
Q 019191 320 EEEIRLLK 327 (345)
Q Consensus 320 ~~~~~~l~ 327 (345)
++|+.+|.
T Consensus 99 p~e~~LL~ 106 (109)
T d2oara1 99 DTQVVLLT 106 (109)
T ss_dssp HHHHHHHH
T ss_pred CcHHHHHH
Confidence 34445554
No 10
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.01 E-value=4.3e+02 Score=15.86 Aligned_cols=18 Identities=17% Similarity=0.521 Sum_probs=10.0
Q ss_pred hHHHHHhhhhhhHHHhhc
Q 019191 290 VVGMVIYSWAVEAEKQRN 307 (345)
Q Consensus 290 i~G~~l~~~~~~~~~~~~ 307 (345)
+++-++|+|..++..+.+
T Consensus 53 i~~Y~iy~W~~~~~~~~~ 70 (75)
T d1ppjg_ 53 VAFYLVYTWGTQEFEKSK 70 (75)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 345566777766544433
Done!