Query 019194
Match_columns 344
No_of_seqs 260 out of 1342
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 07:28:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019194.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019194hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1571 Predicted E3 ubiquitin 100.0 5.8E-46 1.3E-50 339.7 11.0 342 1-344 1-355 (355)
2 PF12483 GIDE: E3 Ubiquitin li 100.0 4.5E-31 9.7E-36 225.4 13.8 140 95-234 12-156 (160)
3 KOG4172 Predicted E3 ubiquitin 99.4 1.2E-14 2.6E-19 96.8 -2.9 50 295-344 8-62 (62)
4 KOG4265 Predicted E3 ubiquitin 99.3 6.1E-13 1.3E-17 122.9 2.5 53 292-344 288-344 (349)
5 KOG4275 Predicted E3 ubiquitin 99.2 1.4E-12 3.1E-17 116.5 0.8 51 294-344 300-350 (350)
6 PF13920 zf-C3HC4_3: Zinc fing 99.2 2.5E-12 5.3E-17 87.8 1.2 45 294-338 2-50 (50)
7 KOG0317 Predicted E3 ubiquitin 99.0 2.6E-10 5.6E-15 102.6 2.4 44 294-338 239-286 (293)
8 KOG0823 Predicted E3 ubiquitin 98.9 1.1E-09 2.3E-14 95.9 3.6 49 293-342 46-103 (230)
9 PLN03208 E3 ubiquitin-protein 98.8 3.8E-09 8.3E-14 90.9 2.7 49 293-342 17-87 (193)
10 KOG4628 Predicted E3 ubiquitin 98.7 5.6E-08 1.2E-12 91.1 8.8 42 295-337 230-279 (348)
11 KOG1100 Predicted E3 ubiquitin 98.5 1.5E-07 3.2E-12 83.2 6.6 47 296-342 160-206 (207)
12 PHA02929 N1R/p28-like protein; 98.5 6E-08 1.3E-12 87.0 2.0 47 294-341 174-232 (238)
13 KOG0320 Predicted E3 ubiquitin 98.4 7.5E-08 1.6E-12 80.9 1.9 48 294-342 131-186 (187)
14 PF13923 zf-C3HC4_2: Zinc fing 98.4 5.9E-08 1.3E-12 62.4 0.7 34 297-331 1-39 (39)
15 PF13639 zf-RING_2: Ring finge 98.4 7.3E-08 1.6E-12 63.7 0.5 36 296-332 2-44 (44)
16 KOG2164 Predicted E3 ubiquitin 98.3 1.5E-07 3.2E-12 91.1 0.8 48 294-342 186-244 (513)
17 PF14634 zf-RING_5: zinc-RING 98.2 4.5E-07 9.7E-12 59.9 1.3 36 297-333 2-44 (44)
18 PHA02926 zinc finger-like prot 98.2 2.5E-07 5.5E-12 80.6 -0.1 46 294-340 170-234 (242)
19 PF15227 zf-C3HC4_4: zinc fing 98.1 1E-06 2.2E-11 57.5 0.9 34 297-331 1-42 (42)
20 COG5574 PEX10 RING-finger-cont 98.1 8.4E-07 1.8E-11 79.2 0.6 42 294-336 215-262 (271)
21 PF00097 zf-C3HC4: Zinc finger 98.0 1.7E-06 3.6E-11 56.1 0.7 34 297-331 1-41 (41)
22 COG5243 HRD1 HRD ubiquitin lig 98.0 8.2E-06 1.8E-10 76.0 5.4 41 294-335 287-344 (491)
23 KOG1785 Tyrosine kinase negati 98.0 1.5E-06 3.3E-11 81.4 0.1 46 294-340 369-420 (563)
24 cd00162 RING RING-finger (Real 97.9 3.7E-06 7.9E-11 54.9 1.5 39 296-335 1-45 (45)
25 KOG0978 E3 ubiquitin ligase in 97.9 1.5E-06 3.2E-11 88.1 -1.0 47 295-342 644-697 (698)
26 smart00184 RING Ring finger. E 97.9 4E-06 8.6E-11 52.8 1.1 34 297-331 1-39 (39)
27 TIGR00599 rad18 DNA repair pro 97.8 5.4E-06 1.2E-10 79.8 1.2 45 292-337 24-72 (397)
28 smart00504 Ubox Modified RING 97.8 8.3E-06 1.8E-10 57.9 1.6 40 296-336 3-46 (63)
29 COG5540 RING-finger-containing 97.8 1.2E-05 2.5E-10 73.1 1.9 41 295-336 324-372 (374)
30 PF13445 zf-RING_UBOX: RING-ty 97.6 1.6E-05 3.4E-10 52.0 0.2 27 297-325 1-31 (43)
31 KOG4692 Predicted E3 ubiquitin 97.6 3E-05 6.5E-10 71.8 1.8 45 292-337 420-468 (489)
32 PF14447 Prok-RING_4: Prokaryo 97.6 3.6E-05 7.7E-10 52.3 1.7 43 294-337 7-51 (55)
33 PF12678 zf-rbx1: RING-H2 zinc 97.5 3.7E-05 8E-10 56.5 1.1 36 296-332 21-73 (73)
34 COG5432 RAD18 RING-finger-cont 97.3 7.9E-05 1.7E-09 67.4 1.5 45 290-335 21-69 (391)
35 COG5236 Uncharacterized conser 97.3 0.0002 4.3E-09 66.3 3.4 48 291-339 58-111 (493)
36 KOG0287 Postreplication repair 97.2 8.2E-05 1.8E-09 68.7 0.0 43 293-336 22-68 (442)
37 KOG0802 E3 ubiquitin ligase [P 97.2 0.00051 1.1E-08 69.8 5.2 41 293-334 290-339 (543)
38 KOG2177 Predicted E3 ubiquitin 97.0 0.00019 4.2E-09 66.5 0.0 40 293-333 12-55 (386)
39 PF14835 zf-RING_6: zf-RING of 96.9 0.0004 8.7E-09 48.9 1.5 40 295-335 8-50 (65)
40 KOG0828 Predicted E3 ubiquitin 96.9 0.0003 6.4E-09 68.0 0.4 45 292-337 569-635 (636)
41 PF04564 U-box: U-box domain; 96.8 0.00056 1.2E-08 50.2 1.5 44 293-337 3-51 (73)
42 KOG0804 Cytoplasmic Zn-finger 96.6 0.0011 2.4E-08 63.6 2.3 42 291-333 172-219 (493)
43 COG5152 Uncharacterized conser 96.5 0.00065 1.4E-08 58.2 0.1 45 290-335 192-240 (259)
44 KOG1039 Predicted E3 ubiquitin 96.3 0.0016 3.4E-08 61.8 1.1 46 294-340 161-225 (344)
45 KOG0311 Predicted E3 ubiquitin 96.2 0.00044 9.6E-09 64.4 -2.8 44 294-338 43-92 (381)
46 KOG2879 Predicted E3 ubiquitin 96.2 0.0029 6.3E-08 57.2 2.4 45 292-337 237-288 (298)
47 KOG4159 Predicted E3 ubiquitin 96.0 0.0022 4.8E-08 62.0 0.9 45 292-337 82-130 (398)
48 KOG0826 Predicted E3 ubiquitin 95.9 0.028 6E-07 52.2 7.1 54 288-342 294-354 (357)
49 KOG1813 Predicted E3 ubiquitin 95.8 0.0039 8.5E-08 56.9 1.1 47 291-338 238-288 (313)
50 PF12861 zf-Apc11: Anaphase-pr 95.4 0.0058 1.2E-07 45.8 0.6 29 307-336 47-82 (85)
51 KOG1734 Predicted RING-contain 95.3 0.007 1.5E-07 54.5 1.0 47 290-337 220-282 (328)
52 PF04641 Rtf2: Rtf2 RING-finge 94.1 0.038 8.3E-07 50.8 2.8 46 291-337 110-162 (260)
53 KOG0825 PHD Zn-finger protein 94.0 0.01 2.3E-07 60.6 -1.0 44 296-340 125-175 (1134)
54 KOG0297 TNF receptor-associate 93.6 0.038 8.2E-07 53.9 2.0 47 292-339 19-70 (391)
55 KOG2932 E3 ubiquitin ligase in 93.6 0.017 3.6E-07 53.1 -0.5 45 295-340 91-138 (389)
56 KOG1001 Helicase-like transcri 93.4 0.023 5E-07 58.9 0.0 40 295-336 455-500 (674)
57 KOG1814 Predicted E3 ubiquitin 93.1 0.036 7.7E-07 53.0 0.8 40 294-334 184-238 (445)
58 smart00744 RINGv The RING-vari 92.5 0.05 1.1E-06 36.5 0.7 36 296-332 1-49 (49)
59 KOG3002 Zn finger protein [Gen 91.6 0.084 1.8E-06 49.4 1.3 44 294-338 48-93 (299)
60 KOG1002 Nucleotide excision re 91.3 0.048 1E-06 53.6 -0.6 41 294-335 536-585 (791)
61 PF10367 Vps39_2: Vacuolar sor 91.0 0.56 1.2E-05 36.5 5.4 30 293-323 77-108 (109)
62 KOG1428 Inhibitor of type V ad 90.8 0.09 1.9E-06 57.4 0.7 43 294-337 3486-3545(3738)
63 KOG3039 Uncharacterized conser 89.8 0.17 3.6E-06 45.3 1.5 42 294-336 221-270 (303)
64 PF04710 Pellino: Pellino; In 89.7 0.1 2.2E-06 49.9 0.0 43 294-337 328-402 (416)
65 KOG4445 Uncharacterized conser 88.7 0.1 2.2E-06 47.9 -0.6 42 294-336 115-186 (368)
66 COG5219 Uncharacterized conser 88.4 0.12 2.7E-06 54.2 -0.3 41 295-336 1470-1523(1525)
67 PF10272 Tmpp129: Putative tra 87.6 0.34 7.4E-06 46.4 2.1 42 293-335 270-350 (358)
68 PF05290 Baculo_IE-1: Baculovi 87.3 0.19 4.1E-06 40.7 0.2 46 294-340 80-136 (140)
69 COG5175 MOT2 Transcriptional r 86.8 0.19 4.1E-06 46.9 -0.1 42 294-336 14-64 (480)
70 KOG3842 Adaptor protein Pellin 85.9 0.4 8.6E-06 44.5 1.4 45 292-337 339-415 (429)
71 COG5194 APC11 Component of SCF 84.7 0.41 8.9E-06 35.2 0.8 40 296-336 33-81 (88)
72 KOG2113 Predicted RNA binding 84.7 0.86 1.9E-05 42.3 3.0 49 293-341 342-392 (394)
73 COG5220 TFB3 Cdk activating ki 83.9 0.24 5.1E-06 44.2 -0.9 38 295-333 11-61 (314)
74 KOG1493 Anaphase-promoting com 83.3 0.17 3.7E-06 36.8 -1.6 40 296-336 33-81 (84)
75 PF11793 FANCL_C: FANCL C-term 82.7 0.36 7.9E-06 35.0 -0.2 42 295-337 3-67 (70)
76 PF14570 zf-RING_4: RING/Ubox 82.1 0.49 1.1E-05 31.5 0.3 38 297-335 1-47 (48)
77 KOG2660 Locus-specific chromos 82.0 0.27 5.8E-06 45.9 -1.3 46 294-340 15-65 (331)
78 PF03854 zf-P11: P-11 zinc fin 81.5 0.52 1.1E-05 31.1 0.2 42 296-339 4-49 (50)
79 PF11789 zf-Nse: Zinc-finger o 79.1 0.8 1.7E-05 31.7 0.6 38 292-330 9-53 (57)
80 cd04488 RecG_wedge_OBF RecG_we 77.6 6.6 0.00014 27.6 5.2 31 168-199 41-71 (75)
81 KOG3161 Predicted E3 ubiquitin 76.7 0.7 1.5E-05 46.8 -0.4 38 294-333 11-54 (861)
82 PF05883 Baculo_RING: Baculovi 74.9 0.79 1.7E-05 37.4 -0.4 31 294-325 26-65 (134)
83 COG5222 Uncharacterized conser 73.9 1.1 2.4E-05 41.2 0.2 38 295-333 275-318 (427)
84 PHA03096 p28-like protein; Pro 71.8 1.2 2.6E-05 41.5 -0.1 30 295-325 179-216 (284)
85 KOG1571 Predicted E3 ubiquitin 70.3 9.2 0.0002 36.4 5.3 61 163-225 209-269 (355)
86 PF01336 tRNA_anti-codon: OB-f 70.3 8.1 0.00018 27.3 4.1 57 106-196 12-68 (75)
87 PF06305 DUF1049: Protein of u 68.7 37 0.00081 23.8 7.4 23 243-265 40-62 (68)
88 PLN02189 cellulose synthase 68.4 2.9 6.3E-05 45.2 1.8 44 293-337 33-88 (1040)
89 KOG3799 Rab3 effector RIM1 and 67.0 8.5 0.00018 31.4 3.8 39 294-335 65-117 (169)
90 KOG2113 Predicted RNA binding 66.8 2.6 5.6E-05 39.2 0.9 48 294-341 136-188 (394)
91 PF04216 FdhE: Protein involve 65.7 4.2 9E-05 38.0 2.1 48 294-342 172-228 (290)
92 KOG2930 SCF ubiquitin ligase, 63.5 2.6 5.7E-05 32.6 0.3 24 310-334 79-106 (114)
93 KOG3579 Predicted E3 ubiquitin 63.4 3 6.6E-05 38.2 0.7 30 295-325 269-302 (352)
94 KOG1941 Acetylcholine receptor 63.1 1.4 3.1E-05 42.1 -1.4 44 292-336 363-416 (518)
95 COG3763 Uncharacterized protei 62.9 5.2 0.00011 28.8 1.6 35 3-39 7-42 (71)
96 KOG2114 Vacuolar assembly/sort 61.6 6.2 0.00013 41.6 2.6 47 295-342 841-889 (933)
97 PF02318 FYVE_2: FYVE-type zin 60.6 40 0.00086 26.9 6.7 40 294-334 54-103 (118)
98 KOG4362 Transcriptional regula 60.1 2.5 5.3E-05 43.7 -0.5 42 295-337 22-70 (684)
99 KOG3842 Adaptor protein Pellin 58.4 5.8 0.00013 37.0 1.6 31 304-334 314-350 (429)
100 KOG1940 Zn-finger protein [Gen 57.9 1.9 4.2E-05 39.7 -1.6 45 296-342 160-212 (276)
101 PF10883 DUF2681: Protein of u 57.2 74 0.0016 24.1 7.1 26 237-262 16-41 (87)
102 PHA02825 LAP/PHD finger-like p 56.9 4.6 0.0001 34.0 0.7 43 293-336 7-59 (162)
103 KOG4218 Nuclear hormone recept 56.2 5.1 0.00011 37.8 0.9 18 292-309 13-30 (475)
104 COG5183 SSM4 Protein involved 55.4 5.2 0.00011 41.9 0.9 45 292-336 10-66 (1175)
105 KOG3113 Uncharacterized conser 55.4 7.6 0.00016 35.1 1.8 44 293-337 110-159 (293)
106 PF08114 PMP1_2: ATPase proteo 54.0 36 0.00078 21.8 4.1 22 231-252 17-38 (43)
107 PF04710 Pellino: Pellino; In 54.0 4.3 9.2E-05 39.1 0.0 30 305-334 302-337 (416)
108 KOG3899 Uncharacterized conser 52.4 4.1 9E-05 37.5 -0.3 23 312-335 325-364 (381)
109 PF00558 Vpu: Vpu protein; In 51.0 23 0.00051 26.3 3.5 23 243-265 26-48 (81)
110 PF07191 zinc-ribbons_6: zinc- 49.9 4.4 9.6E-05 29.2 -0.4 38 296-338 3-43 (70)
111 KOG0825 PHD Zn-finger protein 49.8 5.3 0.00011 41.8 -0.1 42 295-337 100-155 (1134)
112 cd00350 rubredoxin_like Rubred 47.4 11 0.00024 22.8 1.1 15 326-340 18-32 (33)
113 PRK01844 hypothetical protein; 47.1 15 0.00033 26.6 1.9 34 4-39 9-42 (72)
114 cd04489 ExoVII_LU_OBF ExoVII_L 45.8 64 0.0014 23.0 5.3 27 169-195 42-69 (78)
115 PF12906 RINGv: RING-variant d 45.6 11 0.00024 24.9 1.0 35 297-331 1-47 (47)
116 cd04492 YhaM_OBF_like YhaM_OBF 44.9 69 0.0015 22.8 5.4 26 170-196 44-69 (83)
117 PF14880 COX14: Cytochrome oxi 44.6 1E+02 0.0022 21.3 6.6 30 224-253 17-46 (59)
118 PRK03564 formate dehydrogenase 44.5 14 0.0003 34.8 1.8 42 293-334 186-235 (309)
119 TIGR01562 FdhE formate dehydro 44.3 9.8 0.00021 35.8 0.8 42 293-334 183-233 (305)
120 KOG3970 Predicted E3 ubiquitin 43.5 12 0.00025 33.4 1.0 40 296-336 52-105 (299)
121 PF10571 UPF0547: Uncharacteri 43.4 12 0.00027 21.4 0.8 16 318-333 3-22 (26)
122 cd00729 rubredoxin_SM Rubredox 41.3 15 0.00032 22.5 1.0 15 326-340 19-33 (34)
123 COG1198 PriA Primosomal protei 40.1 14 0.0003 39.1 1.2 15 311-325 440-454 (730)
124 KOG2034 Vacuolar sorting prote 39.7 37 0.00079 36.3 4.1 31 293-324 816-848 (911)
125 KOG2068 MOT2 transcription fac 39.7 17 0.00037 34.3 1.6 43 294-337 249-299 (327)
126 PRK00523 hypothetical protein; 39.6 24 0.00051 25.6 2.0 33 5-39 11-43 (72)
127 PF08693 SKG6: Transmembrane a 39.1 14 0.00031 23.6 0.7 14 9-22 25-38 (40)
128 smart00734 ZnF_Rad18 Rad18-lik 38.2 6.3 0.00014 22.6 -0.9 9 327-335 3-11 (26)
129 PF00672 HAMP: HAMP domain; I 37.4 20 0.00044 24.9 1.4 32 2-33 2-33 (70)
130 KOG2817 Predicted E3 ubiquitin 37.1 14 0.00031 35.6 0.7 40 295-335 335-384 (394)
131 PF03672 UPF0154: Uncharacteri 36.6 38 0.00083 24.0 2.6 30 8-39 6-35 (64)
132 KOG1812 Predicted E3 ubiquitin 36.5 11 0.00023 36.8 -0.2 30 294-324 146-179 (384)
133 PF12669 P12: Virus attachment 35.9 31 0.00068 23.9 2.1 12 2-13 2-13 (58)
134 PF14569 zf-UDP: Zinc-binding 35.3 12 0.00027 27.5 -0.0 44 293-337 8-63 (80)
135 PRK11677 hypothetical protein; 34.7 27 0.00059 28.7 1.9 24 2-25 3-26 (134)
136 COG3809 Uncharacterized protei 34.3 17 0.00037 26.8 0.5 8 326-333 22-29 (88)
137 PF04423 Rad50_zn_hook: Rad50 33.4 15 0.00033 24.8 0.2 10 327-336 22-31 (54)
138 KOG2041 WD40 repeat protein [G 31.8 2.2E+02 0.0048 30.2 8.0 13 326-338 1175-1187(1189)
139 PF14316 DUF4381: Domain of un 31.3 1.2E+02 0.0025 25.1 5.2 25 237-261 35-59 (146)
140 KOG1819 FYVE finger-containing 31.1 81 0.0018 31.6 4.7 29 295-324 902-934 (990)
141 PF02891 zf-MIZ: MIZ/SP-RING z 30.7 30 0.00065 23.1 1.3 38 296-334 4-50 (50)
142 PLN02400 cellulose synthase 30.3 47 0.001 36.5 3.3 44 293-337 35-90 (1085)
143 cd04485 DnaE_OBF DnaE_OBF: A s 29.9 73 0.0016 22.4 3.4 25 170-195 45-69 (84)
144 PRK00523 hypothetical protein; 29.5 1.8E+02 0.004 21.1 5.2 26 223-248 6-31 (72)
145 COG1592 Rubrerythrin [Energy p 29.4 23 0.0005 30.2 0.7 24 312-339 140-163 (166)
146 cd04483 hOBFC1_like hOBFC1_lik 28.9 80 0.0017 23.9 3.5 18 170-187 60-77 (92)
147 PF07975 C1_4: TFIIH C1-like d 28.9 26 0.00056 23.7 0.7 21 311-332 26-50 (51)
148 PHA02862 5L protein; Provision 28.6 28 0.0006 28.9 1.0 42 295-336 3-53 (156)
149 PLN02436 cellulose synthase A 28.6 48 0.001 36.4 3.0 44 293-337 35-90 (1094)
150 PF15102 TMEM154: TMEM154 prot 28.5 19 0.00041 30.0 -0.0 16 9-24 71-86 (146)
151 PF10886 DUF2685: Protein of u 28.4 25 0.00055 24.0 0.6 13 326-338 2-14 (54)
152 smart00834 CxxC_CXXC_SSSS Puta 28.1 28 0.00062 21.6 0.8 13 326-338 27-39 (41)
153 PRK10917 ATP-dependent DNA hel 27.5 88 0.0019 33.0 4.7 31 168-199 103-133 (681)
154 PF10882 bPH_5: Bacterial PH d 27.4 1.3E+02 0.0029 22.6 4.7 29 190-219 70-98 (100)
155 PF12120 Arr-ms: Rifampin ADP- 27.2 50 0.0011 25.3 2.0 46 118-185 52-97 (100)
156 PF07438 DUF1514: Protein of u 27.2 60 0.0013 22.9 2.3 32 1-32 1-32 (66)
157 PF12597 DUF3767: Protein of u 27.2 1.7E+02 0.0036 23.5 5.2 26 239-264 81-106 (118)
158 KOG0298 DEAD box-containing he 27.2 16 0.00034 40.6 -0.9 43 293-336 1152-1199(1394)
159 PF10146 zf-C4H2: Zinc finger- 26.7 22 0.00049 32.0 0.1 20 317-336 196-219 (230)
160 PF05568 ASFV_J13L: African sw 26.4 49 0.0011 27.4 2.0 32 2-33 34-66 (189)
161 PRK00398 rpoP DNA-directed RNA 26.3 27 0.00059 22.7 0.5 21 316-336 4-32 (46)
162 PHA02610 uvsY.-2 hypothetical 26.0 28 0.00061 23.4 0.4 14 326-339 2-15 (53)
163 cd04490 PolII_SU_OBF PolII_SU_ 26.0 1.7E+02 0.0036 21.4 4.7 19 169-187 44-62 (79)
164 PF09835 DUF2062: Uncharacteri 25.5 2.9E+02 0.0062 22.7 6.7 31 205-235 101-131 (154)
165 PF05961 Chordopox_A13L: Chord 25.4 57 0.0012 23.3 1.9 20 6-25 9-28 (68)
166 PF10176 DUF2370: Protein of u 25.1 1.3E+02 0.0027 27.2 4.6 31 224-254 193-223 (233)
167 TIGR00595 priA primosomal prot 25.1 37 0.0008 34.4 1.4 20 29-48 28-47 (505)
168 KOG1815 Predicted E3 ubiquitin 24.8 21 0.00046 35.5 -0.4 31 294-325 70-101 (444)
169 PF10883 DUF2681: Protein of u 24.7 3.1E+02 0.0067 20.7 6.7 28 234-261 10-37 (87)
170 PF13240 zinc_ribbon_2: zinc-r 24.6 31 0.00067 19.1 0.4 18 318-335 2-23 (23)
171 cd00730 rubredoxin Rubredoxin; 24.6 32 0.0007 23.1 0.6 14 327-340 36-49 (50)
172 PF01102 Glycophorin_A: Glycop 24.6 35 0.00076 27.6 0.9 20 221-240 65-84 (122)
173 PLN02915 cellulose synthase A 24.2 67 0.0015 35.3 3.1 44 293-337 14-69 (1044)
174 KOG1705 Uncharacterized conser 24.0 29 0.00064 26.2 0.3 33 296-333 29-63 (110)
175 PF09297 zf-NADH-PPase: NADH p 23.9 26 0.00056 20.9 -0.0 19 314-333 3-29 (32)
176 PRK07218 replication factor A; 23.8 1.3E+02 0.0027 29.9 4.7 57 57-126 281-340 (423)
177 PRK13872 conjugal transfer pro 23.3 96 0.0021 27.7 3.6 36 198-233 15-50 (228)
178 PF04076 BOF: Bacterial OB fol 23.2 2.6E+02 0.0056 21.8 5.5 14 113-126 51-64 (103)
179 KOG3039 Uncharacterized conser 22.7 32 0.0007 31.1 0.3 30 294-324 43-72 (303)
180 PF10217 DUF2039: Uncharacteri 22.6 24 0.00053 26.9 -0.4 36 294-334 55-90 (92)
181 PLN02638 cellulose synthase A 22.5 74 0.0016 35.1 3.0 44 293-337 16-71 (1079)
182 KOG3726 Uncharacterized conser 22.5 33 0.00071 35.6 0.4 40 295-335 655-699 (717)
183 KOG3053 Uncharacterized conser 22.4 35 0.00075 31.1 0.5 45 293-337 19-83 (293)
184 PF04367 DUF502: Protein of un 22.0 2.1E+02 0.0046 22.2 4.9 53 8-60 7-66 (108)
185 PF09723 Zn-ribbon_8: Zinc rib 21.9 43 0.00093 21.4 0.7 12 326-337 27-39 (42)
186 COG5235 RFA2 Single-stranded D 21.5 1E+02 0.0022 27.4 3.1 23 104-126 77-99 (258)
187 PRK01343 zinc-binding protein; 21.1 53 0.0011 22.8 1.1 11 326-336 10-20 (57)
188 TIGR03141 cytochro_ccmD heme e 21.1 2.4E+02 0.0053 18.2 5.5 9 226-234 9-17 (45)
189 COG4357 Zinc finger domain con 21.0 48 0.001 25.4 0.9 12 326-337 81-92 (105)
190 PRK13836 conjugal transfer pro 21.0 1.1E+02 0.0024 27.1 3.5 36 199-234 7-42 (220)
191 PF01102 Glycophorin_A: Glycop 20.9 1.4E+02 0.0031 24.1 3.7 27 225-251 65-91 (122)
192 COG4647 AcxC Acetone carboxyla 20.8 61 0.0013 26.3 1.5 23 294-316 57-79 (165)
193 PRK01844 hypothetical protein; 20.7 3E+02 0.0065 20.0 4.9 24 225-248 7-30 (72)
194 KOG1815 Predicted E3 ubiquitin 20.5 44 0.00095 33.2 0.8 18 306-324 178-195 (444)
195 PF12123 Amidase02_C: N-acetyl 20.3 1E+02 0.0022 20.3 2.2 29 191-220 6-35 (45)
No 1
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-46 Score=339.72 Aligned_cols=342 Identities=34% Similarity=0.549 Sum_probs=298.9
Q ss_pred CccchhHHHHHHHHHHHHHHhccchhh---HhhcccccccchhHHHHHhhcC-CCccccEEEEEEEeec-CCCccccC-C
Q 019194 1 MIPWGGISCCLSGAALYLLGRSSGRDA---ELLKTVTRVNQLKELAHLLDSG-SKVLPFIVTVCGRVGS-ETPISCEY-S 74 (344)
Q Consensus 1 ~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~L~~~l~~~-~~~~~~~V~v~G~v~~-~~pl~s~~-s 74 (344)
|.+-+.|++++..+++++.++.+.+.. +.++.++......++...++.. .+.++|+ .+.|.+.+ ..|+.+-. +
T Consensus 1 ~~l~~~~~~~~~~v~l~l~~~~~g~~~~~s~~~~~a~k~~~~~d~~~~~~~~~~~~I~~l-~~~~~~~~~~~~~~~~~v~ 79 (355)
T KOG1571|consen 1 MSLEGRFLLGLTNVALRLLFRQYGRLPRVSKVGKEAEKVLVLVDLKSSWDIAPEKKIPYL-VIRGCAIARKETLRSLCVS 79 (355)
T ss_pred CchhHHHHHhhhHHHHHhhhhhcccchhhHHHhhhccceecchhhhhhhhhccccchHHH-HHhhcccccccchHHhhcc
Confidence 566788888888888877777655544 4556777877888888877664 8999999 49999999 66766555 8
Q ss_pred CceEEEEEeeeeeeeeeecCCCceeeceeeeeeeccEeeEEEECCcee----EEEecCCCCccceeeeeeeeeecCc-cc
Q 019194 75 GLRGVIVEETAEQHFLKHNDAGSWIQDSALMLSMSKEVPWYLDDGTGR----AFVVGARGATGFVLTVGSEVFEESG-RS 149 (344)
Q Consensus 75 ~~~cV~~~~~i~e~~~~~~~~~~w~~~~~~i~~~~~~~pF~L~D~tg~----v~V~~~~~a~~~~~~~~~~~~~~~~-~~ 149 (344)
+.++|.+..+.+++....+..+.|.+.++.++.+.+++||+|.+.++. +++..+.+.-.++++.+++.|++.. .+
T Consensus 80 ~v~gvv~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~l~~q~~~~~~~~~~s~~~~~~~l~l~~~~d~f~~s~p~s 159 (355)
T KOG1571|consen 80 NVPGVVQALTLEEPKGRRDGGGHWNANSKIFHEGGNEVPFFLRSQTTGFACEVRVSKTLGRLFLPLNVVYDLFEPSDPCS 159 (355)
T ss_pred cCCceEEEeeeccceeeeccceeeccceeeccCCCcccceeeccCCcceeeeeeeecceeeeeecceeeeccccccCcce
Confidence 999999999999998887878899999999999999999999999888 9999999999999999999999998 56
Q ss_pred ccccccccccceEEeeeeeeecccCCCceeeEeeeEEecCCCceEEeCCCCCCeeeecCCHHHHHHHhhhhhHHHHHHHh
Q 019194 150 LVRGTLDYLQGLKMLGVKRIERLLPTGTSLTVVGEAVKDDIGTVRIQRPHKGPFYVSPKTIDELIENLGKWARWYKYASF 229 (344)
Q Consensus 150 ~~~~~~~~~~g~~~~g~r~~E~~L~~g~~l~vvGe~~~d~~G~l~i~~P~~~~f~lS~~~~~~L~~~l~~~a~~~~~~~i 229 (344)
+.+...++++|.+..|.+.+|++||+|+.+|++||++.|+++...+++|.+|++|+.....+.|+.++..+++..++.++
T Consensus 160 ~~~~~~~~~sg~~~~~~~~~~~~l~~~~~~t~l~e~v~d~~~~~r~~~~~~g~~~v~~s~~d~LIsr~g~~s~~~kv~~~ 239 (355)
T KOG1571|consen 160 LVDVGGGYHSGVRRGGFRETERVLPLGTRLTALGELVRDGYCGVRVQPPMQGPLYVTKSAADRLISREGDLSFFVKVNGM 239 (355)
T ss_pred eeecccccccceeeecccceEEeeccccceeeeehheecCCCceEecCCccCcceeeccchhhHHHhhccceeeeeecce
Confidence 88888999999999999999999999999999999999988999999999996555555599999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCccCcccccccceecccccce
Q 019194 230 GLTIFGTFLIAKRAIHYILQ--RKRRWELHRRVLAAAAVKRSEQDNEGTNGQAENGSDGTQRDRVMPDLCVICLEQEYNA 307 (344)
Q Consensus 230 ~~~~~g~~ll~~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~C~iC~~~~~~~ 307 (344)
++++.+++++..+..++|.+ +++++++.+....+.. .+......+.+..-+.+++........++.|+||++++.++
T Consensus 240 ~~~~~~~ills~~~~d~~led~r~~r~~l~k~~~~~~~-~rae~~s~g~~gtr~~~~~~~~~~~~~p~lcVVcl~e~~~~ 318 (355)
T KOG1571|consen 240 VFGTLGVILLSFIVKDNYLEDDRRQRRELVKRVEDLAT-VRAELLSRGVRGTRIQNENGTFRELPQPDLCVVCLDEPKSA 318 (355)
T ss_pred eeeeeeEEeehHHHHHHHHHHHHHHHHHHHHhhhhhhh-heeeeecccccccccccccCcccccCCCCceEEecCCccce
Confidence 99999999999999999987 7888888887777776 55555555555555666667777777888999999999999
Q ss_pred EEecCCCccccccchhccCCCccCcccccceeecccC
Q 019194 308 VFVPCGHMCCCIICSWHLTNCPLCRRRIDQVVRTFRH 344 (344)
Q Consensus 308 ~~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~~~~y~~ 344 (344)
+|+||||+|||..|+..++.||+||+.|..++++|+|
T Consensus 319 ~fvpcGh~ccct~cs~~l~~CPvCR~rI~~~~k~y~~ 355 (355)
T KOG1571|consen 319 VFVPCGHVCCCTLCSKHLPQCPVCRQRIRLVRKRYRS 355 (355)
T ss_pred eeecCCcEEEchHHHhhCCCCchhHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999987
No 2
>PF12483 GIDE: E3 Ubiquitin ligase; InterPro: IPR022170 This domain family is found in bacteria, archaea and eukaryotes, and is typically between 150 and 163 amino acids in length. There is a single completely conserved residue E that may be functionally important. GIDE is an E3 ubiquitin ligase which is involved in inducing apoptosis. ; GO: 0016881 acid-amino acid ligase activity
Probab=99.97 E-value=4.5e-31 Score=225.37 Aligned_cols=140 Identities=38% Similarity=0.631 Sum_probs=129.9
Q ss_pred CCceeeceeeeeeeccEeeEEEECCceeEEEecCCCCccceeeeeeeeeecCcccccccccccccceE---Eeeeeeeec
Q 019194 95 AGSWIQDSALMLSMSKEVPWYLDDGTGRAFVVGARGATGFVLTVGSEVFEESGRSLVRGTLDYLQGLK---MLGVKRIER 171 (344)
Q Consensus 95 ~~~w~~~~~~i~~~~~~~pF~L~D~tg~v~V~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~g~r~~E~ 171 (344)
+++|.+++++++++.+.+||+|+|+||+|+|+++..+..+++++++++|+|...+..+.+.++++|.+ ++||||+|+
T Consensus 12 ~~~~~~~~~~v~~~~~~vPF~L~D~tg~v~V~~~p~~a~l~l~~v~~~f~p~~~~~~~~~~~~~~~~~~~~~~G~r~~E~ 91 (160)
T PF12483_consen 12 SRRWSSSWRTVSSGTSEVPFYLEDGTGRVRVVDDPEGAELDLETVYDRFEPSPSSPPDGLFGFFSGERELEPKGYRYTEE 91 (160)
T ss_pred CCcccccEEEEEcceeEcCEEEECCceEEEEecCcccCccceeeEEEEeEECCCCccceeeeeeccceeccccccEEEEE
Confidence 57899999999999999999999999999997667777788999999998877677777888899988 999999999
Q ss_pred ccCCCceeeEeeeEEecCCCceEEeCCCCC--CeeeecCCHHHHHHHhhhhhHHHHHHHhHHHHH
Q 019194 172 LLPTGTSLTVVGEAVKDDIGTVRIQRPHKG--PFYVSPKTIDELIENLGKWARWYKYASFGLTIF 234 (344)
Q Consensus 172 ~L~~g~~l~vvGe~~~d~~G~l~i~~P~~~--~f~lS~~~~~~L~~~l~~~a~~~~~~~i~~~~~ 234 (344)
+||+|++|||+|++..|++|.+.||+|+++ |||||++++++|+++++.++++|++++++++++
T Consensus 92 ~L~~G~~ltvvGe~~~~~~g~~~i~~p~~g~~~f~iS~~s~~~l~~~~~~~~~~~~~~~i~~~~~ 156 (160)
T PF12483_consen 92 ILPVGTPLTVVGELVRDGDGNLVIQPPKDGGQPFFISTKSEEELIRSLRSSARWWKWLAIALGVV 156 (160)
T ss_pred EcCCCCEEEEEEEEEEcCCCcEEEeCCCCCCccEEEeCCCHHHHHHHHHHHHHHHHHHHhheeEE
Confidence 999999999999999999999999999998 999999999999999999999999999988776
No 3
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.2e-14 Score=96.82 Aligned_cols=50 Identities=44% Similarity=1.099 Sum_probs=46.9
Q ss_pred cccceecccccceEEecCCCccccccchhcc-----CCCccCcccccceeecccC
Q 019194 295 DLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQVVRTFRH 344 (344)
Q Consensus 295 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~CR~~i~~~~~~y~~ 344 (344)
+.|.||++++.+.++.-|||+|.|++|..++ ..||+||++|..+++.|++
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY~s 62 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTYRS 62 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhhcC
Confidence 5799999999999999999999999998877 4799999999999999986
No 4
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=6.1e-13 Score=122.91 Aligned_cols=53 Identities=36% Similarity=0.941 Sum_probs=48.0
Q ss_pred ccccccceecccccceEEecCCCccccccchhcc----CCCccCcccccceeecccC
Q 019194 292 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQVVRTFRH 344 (344)
Q Consensus 292 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~~~~~y~~ 344 (344)
++...|+||++..++.++|||+|+|+|..|+..+ ..||+||++|..++.+|.+
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~~~ 344 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIYVN 344 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhheeccc
Confidence 3456899999999999999999999999999988 4799999999999998864
No 5
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.4e-12 Score=116.49 Aligned_cols=51 Identities=43% Similarity=1.033 Sum_probs=49.1
Q ss_pred ccccceecccccceEEecCCCccccccchhccCCCccCcccccceeecccC
Q 019194 294 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHLTNCPLCRRRIDQVVRTFRH 344 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~~~~y~~ 344 (344)
..+|.|||+.|++++||+|||+..|..|-..|..|||||+.|.+++++|+.
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~eCPICRqyi~rvvrif~~ 350 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRMNECPICRQYIVRVVRIFRV 350 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccccccCchHHHHHHHHHhhhcC
Confidence 569999999999999999999999999999999999999999999999974
No 6
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.23 E-value=2.5e-12 Score=87.76 Aligned_cols=45 Identities=42% Similarity=1.125 Sum_probs=39.3
Q ss_pred ccccceecccccceEEecCCCccccccchhcc----CCCccCcccccce
Q 019194 294 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQV 338 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~~ 338 (344)
+..|.||++++++++++||||.++|..|+..+ ..||+||++|+++
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~V 50 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIESV 50 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SEE
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcCC
Confidence 35899999999999999999997799999998 7999999999864
No 7
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=2.6e-10 Score=102.59 Aligned_cols=44 Identities=36% Similarity=0.944 Sum_probs=40.1
Q ss_pred ccccceecccccceEEecCCCccccccchhcc----CCCccCcccccce
Q 019194 294 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQV 338 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~~ 338 (344)
...|.+|++++.+...+||||+| ||.|+..| +.||+||.+....
T Consensus 239 ~~kC~LCLe~~~~pSaTpCGHiF-CWsCI~~w~~ek~eCPlCR~~~~ps 286 (293)
T KOG0317|consen 239 TRKCSLCLENRSNPSATPCGHIF-CWSCILEWCSEKAECPLCREKFQPS 286 (293)
T ss_pred CCceEEEecCCCCCCcCcCcchH-HHHHHHHHHccccCCCcccccCCCc
Confidence 35899999999999999999999 99999999 6899999988653
No 8
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=1.1e-09 Score=95.93 Aligned_cols=49 Identities=31% Similarity=0.762 Sum_probs=43.6
Q ss_pred cccccceecccccceEEecCCCccccccchhcc-------CCCccCccccc--ceeecc
Q 019194 293 MPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-------TNCPLCRRRID--QVVRTF 342 (344)
Q Consensus 293 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-------~~CP~CR~~i~--~~~~~y 342 (344)
....|-|||+..++.++..|||+| ||.|+.+| +.||+|+..|. .++++|
T Consensus 46 ~~FdCNICLd~akdPVvTlCGHLF-CWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVVTLCGHLF-CWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CceeeeeeccccCCCEEeecccce-ehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 345999999999999999999999 99999998 57999998775 688887
No 9
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.76 E-value=3.8e-09 Score=90.87 Aligned_cols=49 Identities=31% Similarity=0.769 Sum_probs=41.9
Q ss_pred cccccceecccccceEEecCCCccccccchhcc--------------------CCCccCcccccc--eeecc
Q 019194 293 MPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL--------------------TNCPLCRRRIDQ--VVRTF 342 (344)
Q Consensus 293 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~--------------------~~CP~CR~~i~~--~~~~y 342 (344)
....|.||++...+.++++|||.| |+.|+..| ..||+||.+|.. ++++|
T Consensus 17 ~~~~CpICld~~~dPVvT~CGH~F-C~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 17 GDFDCNICLDQVRDPVVTLCGHLF-CWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred CccCCccCCCcCCCcEEcCCCchh-HHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 346899999999999999999999 99999764 379999999964 66666
No 10
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=5.6e-08 Score=91.06 Aligned_cols=42 Identities=38% Similarity=0.782 Sum_probs=35.6
Q ss_pred cccceecccccc---eEEecCCCccccccchhcc-----CCCccCcccccc
Q 019194 295 DLCVICLEQEYN---AVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQ 337 (344)
Q Consensus 295 ~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~-----~~CP~CR~~i~~ 337 (344)
..|+||++.+.. ..+|||.|.|.| .|.+.| ..||+|++.|..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~-~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHV-NCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhh-ccchhhHhhcCccCCCCCCcCCC
Confidence 589999998764 667899999965 999999 359999998764
No 11
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=1.5e-07 Score=83.17 Aligned_cols=47 Identities=36% Similarity=0.824 Sum_probs=44.7
Q ss_pred ccceecccccceEEecCCCccccccchhccCCCccCcccccceeecc
Q 019194 296 LCVICLEQEYNAVFVPCGHMCCCIICSWHLTNCPLCRRRIDQVVRTF 342 (344)
Q Consensus 296 ~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~~~~y 342 (344)
.|..|-.+...++++||.|+++|..|......||+|+.++.+.+++|
T Consensus 160 ~Cr~C~~~~~~VlllPCrHl~lC~~C~~~~~~CPiC~~~~~s~~~v~ 206 (207)
T KOG1100|consen 160 SCRKCGEREATVLLLPCRHLCLCGICDESLRICPICRSPKTSSVEVN 206 (207)
T ss_pred cceecCcCCceEEeecccceEecccccccCccCCCCcChhhceeecc
Confidence 49999999999999999999999999998889999999999998887
No 12
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.47 E-value=6e-08 Score=86.98 Aligned_cols=47 Identities=32% Similarity=0.865 Sum_probs=38.8
Q ss_pred ccccceecccccc--------eEEecCCCccccccchhcc----CCCccCcccccceeec
Q 019194 294 PDLCVICLEQEYN--------AVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQVVRT 341 (344)
Q Consensus 294 ~~~C~iC~~~~~~--------~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~~~~~ 341 (344)
...|+||++...+ .++.+|||.| |..|...| ..||+||.++..+++.
T Consensus 174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~H~F-C~~CI~~Wl~~~~tCPlCR~~~~~v~~~ 232 (238)
T PHA02929 174 DKECAICMEKVYDKEIKNMYFGILSNCNHVF-CIECIDIWKKEKNTCPVCRTPFISVIKS 232 (238)
T ss_pred CCCCccCCcccccCccccccceecCCCCCcc-cHHHHHHHHhcCCCCCCCCCEeeEEeee
Confidence 3589999997433 3566899999 99999988 6899999999987764
No 13
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=7.5e-08 Score=80.89 Aligned_cols=48 Identities=33% Similarity=0.821 Sum_probs=39.0
Q ss_pred ccccceecccccceE-E-ecCCCccccccchhcc----CCCccCcccccc--eeecc
Q 019194 294 PDLCVICLEQEYNAV-F-VPCGHMCCCIICSWHL----TNCPLCRRRIDQ--VVRTF 342 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~-~-~pCgH~~~C~~C~~~~----~~CP~CR~~i~~--~~~~y 342 (344)
...|+|||+.....+ + ..|||+| |..|+... ..||+||.+|+. +.++|
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHvF-C~~Cik~alk~~~~CP~C~kkIt~k~~~rI~ 186 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHVF-CSQCIKDALKNTNKCPTCRKKITHKQFHRIY 186 (187)
T ss_pred ccCCCceecchhhccccccccchhH-HHHHHHHHHHhCCCCCCcccccchhhheecc
Confidence 358999999887654 3 7999999 99999876 589999988864 55555
No 14
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.43 E-value=5.9e-08 Score=62.37 Aligned_cols=34 Identities=41% Similarity=1.082 Sum_probs=29.0
Q ss_pred cceecccccce-EEecCCCccccccchhcc----CCCccC
Q 019194 297 CVICLEQEYNA-VFVPCGHMCCCIICSWHL----TNCPLC 331 (344)
Q Consensus 297 C~iC~~~~~~~-~~~pCgH~~~C~~C~~~~----~~CP~C 331 (344)
|+||++...+. ++++|||.+ |.+|+.++ .+||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~f-C~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSF-CKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEE-EHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCch-hHHHHHHHHHCcCCCcCC
Confidence 89999999998 688999998 99999887 689988
No 15
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.39 E-value=7.3e-08 Score=63.66 Aligned_cols=36 Identities=42% Similarity=0.919 Sum_probs=30.7
Q ss_pred ccceecccc---cceEEecCCCccccccchhcc----CCCccCc
Q 019194 296 LCVICLEQE---YNAVFVPCGHMCCCIICSWHL----TNCPLCR 332 (344)
Q Consensus 296 ~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~----~~CP~CR 332 (344)
.|+||++.. ..++.++|||.| |..|+..| ..||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~f-h~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVF-HRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEE-EHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCee-CHHHHHHHHHhCCcCCccC
Confidence 699999875 467788999999 99999998 6999998
No 16
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1.5e-07 Score=91.08 Aligned_cols=48 Identities=35% Similarity=0.784 Sum_probs=41.4
Q ss_pred ccccceecccccceEEecCCCccccccchhcc---------CCCccCcccccc--eeecc
Q 019194 294 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHL---------TNCPLCRRRIDQ--VVRTF 342 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~---------~~CP~CR~~i~~--~~~~y 342 (344)
...|+||++.+..+..+.|||.| |..|+..+ ..||+||..|.. +.++|
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiF-C~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~ 244 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIF-CGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVF 244 (513)
T ss_pred CCcCCcccCCCCcccccccCcee-eHHHHHHHHhhhcccCCccCCchhhhccccceeeee
Confidence 66899999999999999999999 88998765 589999999976 55543
No 17
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.22 E-value=4.5e-07 Score=59.89 Aligned_cols=36 Identities=39% Similarity=1.046 Sum_probs=31.4
Q ss_pred cceecccc---cceEEecCCCccccccchhccC----CCccCcc
Q 019194 297 CVICLEQE---YNAVFVPCGHMCCCIICSWHLT----NCPLCRR 333 (344)
Q Consensus 297 C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~~----~CP~CR~ 333 (344)
|.+|+... ....+++|||.+ |..|+..+. .||+||+
T Consensus 2 C~~C~~~~~~~~~~~l~~CgH~~-C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCGHIF-CEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CcCcCccccCCCCeEEcccCCHH-HHHHHHhhcCCCCCCcCCCC
Confidence 88998877 457889999999 999999886 9999985
No 18
>PHA02926 zinc finger-like protein; Provisional
Probab=98.21 E-value=2.5e-07 Score=80.60 Aligned_cols=46 Identities=35% Similarity=0.827 Sum_probs=37.0
Q ss_pred ccccceecccc---------cceEEecCCCccccccchhccC----------CCccCcccccceee
Q 019194 294 PDLCVICLEQE---------YNAVFVPCGHMCCCIICSWHLT----------NCPLCRRRIDQVVR 340 (344)
Q Consensus 294 ~~~C~iC~~~~---------~~~~~~pCgH~~~C~~C~~~~~----------~CP~CR~~i~~~~~ 340 (344)
...|.||++.. +..++.+|+|.| |..|+..|. .||+||+.+..+.+
T Consensus 170 E~eCgICmE~I~eK~~~~eRrFGIL~~CnHsF-Cl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~p 234 (242)
T PHA02926 170 EKECGICYEVVYSKRLENDRYFGLLDSCNHIF-CITCINIWHRTRRETGASDNCPICRTRFRNITM 234 (242)
T ss_pred CCCCccCccccccccccccccccccCCCCchH-HHHHHHHHHHhccccCcCCcCCCCcceeeeecc
Confidence 35899999863 235777999999 999999982 29999999887655
No 19
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.09 E-value=1e-06 Score=57.50 Aligned_cols=34 Identities=44% Similarity=1.037 Sum_probs=27.4
Q ss_pred cceecccccceEEecCCCccccccchhcc------C--CCccC
Q 019194 297 CVICLEQEYNAVFVPCGHMCCCIICSWHL------T--NCPLC 331 (344)
Q Consensus 297 C~iC~~~~~~~~~~pCgH~~~C~~C~~~~------~--~CP~C 331 (344)
|+||++-..+.+.++|||.| |..|+..+ . .||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~F-C~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSF-CRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEE-EHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHH-HHHHHHHHHHccCCcCCCCcCC
Confidence 89999999999999999999 99999876 1 59987
No 20
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=8.4e-07 Score=79.22 Aligned_cols=42 Identities=36% Similarity=0.898 Sum_probs=37.2
Q ss_pred ccccceecccccceEEecCCCccccccchhc-c-----CCCccCccccc
Q 019194 294 PDLCVICLEQEYNAVFVPCGHMCCCIICSWH-L-----TNCPLCRRRID 336 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~-~-----~~CP~CR~~i~ 336 (344)
...|++|++.+.+...+||||+| |+.|... | ..||+||+++.
T Consensus 215 d~kC~lC~e~~~~ps~t~CgHlF-C~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 215 DYKCFLCLEEPEVPSCTPCGHLF-CLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred ccceeeeecccCCcccccccchh-hHHHHHHHHHhhccccCchhhhhcc
Confidence 45799999999999999999999 9999887 5 35999999864
No 21
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.00 E-value=1.7e-06 Score=56.10 Aligned_cols=34 Identities=47% Similarity=1.112 Sum_probs=30.4
Q ss_pred cceecccccceE-EecCCCccccccchhcc------CCCccC
Q 019194 297 CVICLEQEYNAV-FVPCGHMCCCIICSWHL------TNCPLC 331 (344)
Q Consensus 297 C~iC~~~~~~~~-~~pCgH~~~C~~C~~~~------~~CP~C 331 (344)
|.||++...+.. +++|||.+ |..|..++ ..||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~f-C~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSF-CRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEE-EHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcc-hHHHHHHHHHhcCCccCCcC
Confidence 889999999888 89999998 99998876 479988
No 22
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=8.2e-06 Score=75.97 Aligned_cols=41 Identities=32% Similarity=0.904 Sum_probs=33.3
Q ss_pred ccccceecccc-------------cceEEecCCCccccccchhcc----CCCccCcccc
Q 019194 294 PDLCVICLEQE-------------YNAVFVPCGHMCCCIICSWHL----TNCPLCRRRI 335 (344)
Q Consensus 294 ~~~C~iC~~~~-------------~~~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i 335 (344)
...|.||+++- ....=+||||.. ...|...| ++||+||.++
T Consensus 287 D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHil-Hl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 287 DRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHIL-HLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred CCeEEEecccccCCCCccCcccccCCccccccccee-eHHHHHHHHHhccCCCcccCcc
Confidence 45899999872 123457999998 78999998 7999999984
No 23
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.98 E-value=1.5e-06 Score=81.38 Aligned_cols=46 Identities=35% Similarity=0.831 Sum_probs=41.3
Q ss_pred ccccceecccccceEEecCCCccccccchhcc------CCCccCcccccceee
Q 019194 294 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHL------TNCPLCRRRIDQVVR 340 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~------~~CP~CR~~i~~~~~ 340 (344)
-.+|.||-++.+++.+-||||+. |..|...| +.||.||..|...-+
T Consensus 369 FeLCKICaendKdvkIEPCGHLl-Ct~CLa~WQ~sd~gq~CPFCRcEIKGte~ 420 (563)
T KOG1785|consen 369 FELCKICAENDKDVKIEPCGHLL-CTSCLAAWQDSDEGQTCPFCRCEIKGTEP 420 (563)
T ss_pred HHHHHHhhccCCCcccccccchH-HHHHHHhhcccCCCCCCCceeeEeccccc
Confidence 45999999999999999999998 99999988 589999999987544
No 24
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.94 E-value=3.7e-06 Score=54.92 Aligned_cols=39 Identities=46% Similarity=1.040 Sum_probs=31.1
Q ss_pred ccceecccccceE-EecCCCccccccchhcc-----CCCccCcccc
Q 019194 296 LCVICLEQEYNAV-FVPCGHMCCCIICSWHL-----TNCPLCRRRI 335 (344)
Q Consensus 296 ~C~iC~~~~~~~~-~~pCgH~~~C~~C~~~~-----~~CP~CR~~i 335 (344)
.|.||++...+.+ +.+|||.+ |..|...+ ..||+||..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~-c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVF-CRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChh-cHHHHHHHHHhCcCCCCCCCCcC
Confidence 4899999885544 44699998 99999866 4799999764
No 25
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=1.5e-06 Score=88.13 Aligned_cols=47 Identities=30% Similarity=0.648 Sum_probs=41.3
Q ss_pred cccceecccccceEEecCCCccccccchhcc-----CCCccCccccc--ceeecc
Q 019194 295 DLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRID--QVVRTF 342 (344)
Q Consensus 295 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~CR~~i~--~~~~~y 342 (344)
-.|++|.++++++++..|||+| |..|.... .+||.|..++. .+.+||
T Consensus 644 LkCs~Cn~R~Kd~vI~kC~H~F-C~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~ 697 (698)
T KOG0978|consen 644 LKCSVCNTRWKDAVITKCGHVF-CEECVQTRYETRQRKCPKCNAAFGANDVHRIH 697 (698)
T ss_pred eeCCCccCchhhHHHHhcchHH-HHHHHHHHHHHhcCCCCCCCCCCCcccccccC
Confidence 3899999999999999999999 99999876 69999999885 366665
No 26
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.91 E-value=4e-06 Score=52.81 Aligned_cols=34 Identities=44% Similarity=1.150 Sum_probs=30.3
Q ss_pred cceecccccceEEecCCCccccccchhcc-----CCCccC
Q 019194 297 CVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLC 331 (344)
Q Consensus 297 C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~C 331 (344)
|.||++...+.+++||||.+ |..|...+ ..||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~-c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTF-CRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChH-HHHHHHHHHHhCcCCCCCC
Confidence 78999999999999999998 99999865 469987
No 27
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.84 E-value=5.4e-06 Score=79.78 Aligned_cols=45 Identities=29% Similarity=0.637 Sum_probs=39.0
Q ss_pred ccccccceecccccceEEecCCCccccccchhcc----CCCccCcccccc
Q 019194 292 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 337 (344)
Q Consensus 292 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~ 337 (344)
.....|.||++...+.+++||||.| |..|...+ ..||+||..+..
T Consensus 24 e~~l~C~IC~d~~~~PvitpCgH~F-Cs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 24 DTSLRCHICKDFFDVPVLTSCSHTF-CSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred ccccCCCcCchhhhCccCCCCCCch-hHHHHHHHHhCCCCCCCCCCcccc
Confidence 3456999999999999999999999 99999865 479999998754
No 28
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=97.81 E-value=8.3e-06 Score=57.95 Aligned_cols=40 Identities=23% Similarity=0.309 Sum_probs=36.7
Q ss_pred ccceecccccceEEecCCCccccccchhcc----CCCccCccccc
Q 019194 296 LCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRID 336 (344)
Q Consensus 296 ~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~ 336 (344)
.|+||.+...+.+..||||.+ |..|+..+ ..||+|+.++.
T Consensus 3 ~Cpi~~~~~~~Pv~~~~G~v~-~~~~i~~~~~~~~~cP~~~~~~~ 46 (63)
T smart00504 3 LCPISLEVMKDPVILPSGQTY-ERRAIEKWLLSHGTDPVTGQPLT 46 (63)
T ss_pred CCcCCCCcCCCCEECCCCCEE-eHHHHHHHHHHCCCCCCCcCCCC
Confidence 699999999999999999999 99999987 58999999884
No 29
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=1.2e-05 Score=73.11 Aligned_cols=41 Identities=29% Similarity=0.679 Sum_probs=35.1
Q ss_pred cccceecccc---cceEEecCCCccccccchhcc-----CCCccCccccc
Q 019194 295 DLCVICLEQE---YNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRID 336 (344)
Q Consensus 295 ~~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~-----~~CP~CR~~i~ 336 (344)
-.|+|||++. ...+++||.|.| ...|..+| .+||+||.+|.
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~F-H~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRF-HVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCcee-chhHHHHHHhhhcccCCccCCCCC
Confidence 5899999874 237889999999 78999998 58999999875
No 30
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.59 E-value=1.6e-05 Score=52.00 Aligned_cols=27 Identities=41% Similarity=0.920 Sum_probs=18.1
Q ss_pred cceecccccc----eEEecCCCccccccchhcc
Q 019194 297 CVICLEQEYN----AVFVPCGHMCCCIICSWHL 325 (344)
Q Consensus 297 C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~ 325 (344)
|+||.+ ..+ .++|||||++ |.+|..++
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~-c~~cl~~l 31 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVF-CKDCLQKL 31 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EE-EHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccHH-HHHHHHHH
Confidence 788888 656 8889999999 99999887
No 31
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=3e-05 Score=71.80 Aligned_cols=45 Identities=33% Similarity=0.755 Sum_probs=39.3
Q ss_pred ccccccceecccccceEEecCCCccccccchhcc----CCCccCcccccc
Q 019194 292 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 337 (344)
Q Consensus 292 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~ 337 (344)
.+.++|+||+..+.+++|.||+|.. |..|+..- +.|=.|+..+..
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~S-C~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRS-CYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecccchhhccCCCCch-HHHHHHHHHhcCCeeeEecceeee
Confidence 3456999999999999999999998 99998864 789999988764
No 32
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=97.57 E-value=3.6e-05 Score=52.33 Aligned_cols=43 Identities=28% Similarity=0.671 Sum_probs=37.3
Q ss_pred ccccceecccccceEEecCCCccccccchhcc--CCCccCcccccc
Q 019194 294 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHL--TNCPLCRRRIDQ 337 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~--~~CP~CR~~i~~ 337 (344)
...|..|......-+++||||+. |..|.... ..||+|-.+++.
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I-~~~~f~~~rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLI-CDNCFPGERYNGCPFCGTPFEF 51 (55)
T ss_pred ceeEEEcccccccccccccccee-eccccChhhccCCCCCCCcccC
Confidence 34799999998889999999999 99997755 799999998864
No 33
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.50 E-value=3.7e-05 Score=56.53 Aligned_cols=36 Identities=42% Similarity=0.945 Sum_probs=27.9
Q ss_pred ccceecccc-------------cceEEecCCCccccccchhcc----CCCccCc
Q 019194 296 LCVICLEQE-------------YNAVFVPCGHMCCCIICSWHL----TNCPLCR 332 (344)
Q Consensus 296 ~C~iC~~~~-------------~~~~~~pCgH~~~C~~C~~~~----~~CP~CR 332 (344)
.|.||++.. ..+...+|||.| ...|+..| ..||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~F-H~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIF-HFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEE-EHHHHHHHHTTSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCE-EHHHHHHHHhcCCcCCCCC
Confidence 599998654 234566999999 89999988 6899998
No 34
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.35 E-value=7.9e-05 Score=67.38 Aligned_cols=45 Identities=27% Similarity=0.499 Sum_probs=38.8
Q ss_pred CcccccccceecccccceEEecCCCccccccchhcc----CCCccCcccc
Q 019194 290 DRVMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRI 335 (344)
Q Consensus 290 ~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i 335 (344)
..+....|-||-+.-+-.+..+|||.| |.-|+... +.||+||.+.
T Consensus 21 ~LDs~lrC~IC~~~i~ip~~TtCgHtF-CslCIR~hL~~qp~CP~Cr~~~ 69 (391)
T COG5432 21 GLDSMLRCRICDCRISIPCETTCGHTF-CSLCIRRHLGTQPFCPVCREDP 69 (391)
T ss_pred cchhHHHhhhhhheeecceecccccch-hHHHHHHHhcCCCCCccccccH
Confidence 334456899999999999999999999 99999875 6899999764
No 35
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.28 E-value=0.0002 Score=66.30 Aligned_cols=48 Identities=35% Similarity=0.746 Sum_probs=39.7
Q ss_pred cccccccceecccccceEEecCCCccccccchhcc------CCCccCccccccee
Q 019194 291 RVMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL------TNCPLCRRRIDQVV 339 (344)
Q Consensus 291 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~------~~CP~CR~~i~~~~ 339 (344)
.++.+.|.||-..-.-..++||+|.. |..|+..+ +.||+||..-..++
T Consensus 58 DEen~~C~ICA~~~TYs~~~PC~H~~-CH~Ca~RlRALY~~K~C~~CrTE~e~V~ 111 (493)
T COG5236 58 DEENMNCQICAGSTTYSARYPCGHQI-CHACAVRLRALYMQKGCPLCRTETEAVV 111 (493)
T ss_pred ccccceeEEecCCceEEEeccCCchH-HHHHHHHHHHHHhccCCCccccccceEE
Confidence 34566999999888778889999998 99998876 68999998766543
No 36
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.21 E-value=8.2e-05 Score=68.65 Aligned_cols=43 Identities=28% Similarity=0.675 Sum_probs=38.4
Q ss_pred cccccceecccccceEEecCCCccccccchhcc----CCCccCccccc
Q 019194 293 MPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRID 336 (344)
Q Consensus 293 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~ 336 (344)
+-.-|-||.+=.+-++++||+|.| |.-|+... +.||.|+.+++
T Consensus 22 ~lLRC~IC~eyf~ip~itpCsHtf-CSlCIR~~L~~~p~CP~C~~~~~ 68 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIPMITPCSHTF-CSLCIRKFLSYKPQCPTCCVTVT 68 (442)
T ss_pred HHHHHhHHHHHhcCceeccccchH-HHHHHHHHhccCCCCCceecccc
Confidence 345899999999999999999999 99999986 79999998875
No 37
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.00051 Score=69.80 Aligned_cols=41 Identities=37% Similarity=0.835 Sum_probs=36.1
Q ss_pred cccccceecccccc-----eEEecCCCccccccchhcc----CCCccCccc
Q 019194 293 MPDLCVICLEQEYN-----AVFVPCGHMCCCIICSWHL----TNCPLCRRR 334 (344)
Q Consensus 293 ~~~~C~iC~~~~~~-----~~~~pCgH~~~C~~C~~~~----~~CP~CR~~ 334 (344)
....|.||.+.-.. ...+||||.+ |..|...| +.||+||..
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hif-h~~CL~~W~er~qtCP~CR~~ 339 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIF-HDSCLRSWFERQQTCPTCRTV 339 (543)
T ss_pred cCCeeeeechhhccccccccceeecccch-HHHHHHHHHHHhCcCCcchhh
Confidence 35689999998776 7889999999 99999998 799999984
No 38
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.00019 Score=66.49 Aligned_cols=40 Identities=40% Similarity=0.860 Sum_probs=35.4
Q ss_pred cccccceecccccceEEecCCCccccccchhcc----CCCccCcc
Q 019194 293 MPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRR 333 (344)
Q Consensus 293 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~CR~ 333 (344)
+...|.||++......++||||.+ |..|...+ -.||.||.
T Consensus 12 ~~~~C~iC~~~~~~p~~l~C~H~~-c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 12 EELTCPICLEYFREPVLLPCGHNF-CRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccChhhHHHhhcCccccccchH-hHHHHHHhcCCCcCCcccCC
Confidence 456899999999998999999999 99999886 48999994
No 39
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=96.95 E-value=0.0004 Score=48.86 Aligned_cols=40 Identities=28% Similarity=0.718 Sum_probs=22.5
Q ss_pred cccceecccccceE-EecCCCccccccchhcc--CCCccCcccc
Q 019194 295 DLCVICLEQEYNAV-FVPCGHMCCCIICSWHL--TNCPLCRRRI 335 (344)
Q Consensus 295 ~~C~iC~~~~~~~~-~~pCgH~~~C~~C~~~~--~~CP~CR~~i 335 (344)
..|.+|.+--+..+ +..|.|.| |..|+..- ..||+|+.|-
T Consensus 8 LrCs~C~~~l~~pv~l~~CeH~f-Cs~Ci~~~~~~~CPvC~~Pa 50 (65)
T PF14835_consen 8 LRCSICFDILKEPVCLGGCEHIF-CSSCIRDCIGSECPVCHTPA 50 (65)
T ss_dssp TS-SSS-S--SS-B---SSS--B--TTTGGGGTTTB-SSS--B-
T ss_pred cCCcHHHHHhcCCceeccCccHH-HHHHhHHhcCCCCCCcCChH
Confidence 47999999988875 56999999 99999876 7899999874
No 40
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.0003 Score=68.03 Aligned_cols=45 Identities=29% Similarity=0.693 Sum_probs=36.2
Q ss_pred ccccccceeccc-----------------ccceEEecCCCccccccchhcc----C-CCccCcccccc
Q 019194 292 VMPDLCVICLEQ-----------------EYNAVFVPCGHMCCCIICSWHL----T-NCPLCRRRIDQ 337 (344)
Q Consensus 292 ~~~~~C~iC~~~-----------------~~~~~~~pCgH~~~C~~C~~~~----~-~CP~CR~~i~~ 337 (344)
.....|+||++. .++.++.||.|++ -..|...| + .||+||+++..
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~Hif-H~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIF-HRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHH-HHHHHHHHHhhhcccCCccCCCCCC
Confidence 345589999962 3567888999999 78999988 3 89999998753
No 41
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=96.81 E-value=0.00056 Score=50.23 Aligned_cols=44 Identities=23% Similarity=0.256 Sum_probs=34.5
Q ss_pred cccccceecccccceEEecCCCccccccchhcc-----CCCccCcccccc
Q 019194 293 MPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQ 337 (344)
Q Consensus 293 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~CR~~i~~ 337 (344)
+...|+||.+-..+.+++||||.+ +..|...+ ..||+|++++..
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~ty-er~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHTY-ERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEEE-EHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred cccCCcCcCcHhhCceeCCcCCEE-cHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 356899999999999999999999 99999887 479999998865
No 42
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.62 E-value=0.0011 Score=63.64 Aligned_cols=42 Identities=29% Similarity=0.720 Sum_probs=32.8
Q ss_pred cccccccceecccccc----eEEecCCCccccccchhcc--CCCccCcc
Q 019194 291 RVMPDLCVICLEQEYN----AVFVPCGHMCCCIICSWHL--TNCPLCRR 333 (344)
Q Consensus 291 ~~~~~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~--~~CP~CR~ 333 (344)
..+-..|+||+++.-. ++-.+|.|.|.| .|...| ..||+||-
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~-~cl~~w~~~scpvcR~ 219 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTILCNHSFHC-SCLMKWWDSSCPVCRY 219 (493)
T ss_pred cccCCCcchhHhhcCccccceeeeecccccch-HHHhhcccCcChhhhh
Confidence 3445599999987543 345599999977 999999 69999994
No 43
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.51 E-value=0.00065 Score=58.23 Aligned_cols=45 Identities=29% Similarity=0.735 Sum_probs=38.6
Q ss_pred CcccccccceecccccceEEecCCCccccccchhcc----CCCccCcccc
Q 019194 290 DRVMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRI 335 (344)
Q Consensus 290 ~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i 335 (344)
.+..+..|-||...++..++..|||.| |..|+..- +.|-+|...-
T Consensus 192 ~e~IPF~C~iCKkdy~spvvt~CGH~F-C~~Cai~~y~kg~~C~~Cgk~t 240 (259)
T COG5152 192 GEKIPFLCGICKKDYESPVVTECGHSF-CSLCAIRKYQKGDECGVCGKAT 240 (259)
T ss_pred CCCCceeehhchhhccchhhhhcchhH-HHHHHHHHhccCCcceecchhh
Confidence 344578999999999999999999999 99998864 6899998654
No 44
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.0016 Score=61.75 Aligned_cols=46 Identities=30% Similarity=0.689 Sum_probs=37.6
Q ss_pred ccccceecccccceE-----E---ecCCCccccccchhcc-----------CCCccCcccccceee
Q 019194 294 PDLCVICLEQEYNAV-----F---VPCGHMCCCIICSWHL-----------TNCPLCRRRIDQVVR 340 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~-----~---~pCgH~~~C~~C~~~~-----------~~CP~CR~~i~~~~~ 340 (344)
...|-||+++..+.. | .+|-|.+ |-.|+..| +.||.||.+...+++
T Consensus 161 ~k~CGICme~i~ek~~~~~rfgilpnC~H~~-Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~p 225 (344)
T KOG1039|consen 161 EKECGICMETINEKAASERRFGILPNCNHSF-CLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNP 225 (344)
T ss_pred cccceehhhhccccchhhhhcccCCCcchhh-hhcHhHhhhhhhccccccccCCCcccCccccccc
Confidence 458999999866555 4 6899999 99999988 479999998877654
No 45
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.00044 Score=64.41 Aligned_cols=44 Identities=30% Similarity=0.780 Sum_probs=36.1
Q ss_pred ccccceecccccceE-EecCCCccccccchhcc-----CCCccCcccccce
Q 019194 294 PDLCVICLEQEYNAV-FVPCGHMCCCIICSWHL-----TNCPLCRRRIDQV 338 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~-~~pCgH~~~C~~C~~~~-----~~CP~CR~~i~~~ 338 (344)
...|.||++--+..+ ..-|+|.| |.+|++.- ..||-||+...+.
T Consensus 43 ~v~c~icl~llk~tmttkeClhrf-c~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 43 QVICPICLSLLKKTMTTKECLHRF-CFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred hhccHHHHHHHHhhcccHHHHHHH-HHHHHHHHHHhcCCCCchHHhhcccc
Confidence 458999999877654 45899999 99999875 6999999987653
No 46
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.0029 Score=57.15 Aligned_cols=45 Identities=27% Similarity=0.699 Sum_probs=36.7
Q ss_pred ccccccceecccccceEEe-cCCCccccccchhcc---C---CCccCcccccc
Q 019194 292 VMPDLCVICLEQEYNAVFV-PCGHMCCCIICSWHL---T---NCPLCRRRIDQ 337 (344)
Q Consensus 292 ~~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~---~---~CP~CR~~i~~ 337 (344)
.....|++|-+.|..+... +|||.+ |+.|+.+- . .||.|..++..
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~Hiy-CY~Ci~ts~~~~asf~Cp~Cg~~~~~ 288 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIY-CYYCIATSRLWDASFTCPLCGENVEP 288 (298)
T ss_pred cCCceeeccCCCCCCCeeecccccee-ehhhhhhhhcchhhcccCccCCCCcc
Confidence 3455899999999887655 799999 99998864 2 89999988764
No 47
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.0022 Score=61.99 Aligned_cols=45 Identities=36% Similarity=0.808 Sum_probs=38.3
Q ss_pred ccccccceecccccceEEecCCCccccccchhcc----CCCccCcccccc
Q 019194 292 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 337 (344)
Q Consensus 292 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~ 337 (344)
..+..|.||+..-...+.+||||.+ |..|..+. ..||.||..+..
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs~-c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHSF-CLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCccccccccc-cHHHHHHHhccCCCCccccccccc
Confidence 4567999999999999999999999 99996654 689999988764
No 48
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.028 Score=52.18 Aligned_cols=54 Identities=22% Similarity=0.571 Sum_probs=38.7
Q ss_pred ccCcccccccceecccccceEEec-CCCccccccchhcc----CCCccCcccc--cceeecc
Q 019194 288 QRDRVMPDLCVICLEQEYNAVFVP-CGHMCCCIICSWHL----TNCPLCRRRI--DQVVRTF 342 (344)
Q Consensus 288 ~~~~~~~~~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~~----~~CP~CR~~i--~~~~~~y 342 (344)
+....+...|++|+....|..++. -|-++ |+.|+... ..||+-..|. ...+++|
T Consensus 294 e~l~~~~~~CpvClk~r~Nptvl~vSGyVf-CY~Ci~~Yv~~~~~CPVT~~p~~v~~l~rl~ 354 (357)
T KOG0826|consen 294 ELLPPDREVCPVCLKKRQNPTVLEVSGYVF-CYPCIFSYVVNYGHCPVTGYPASVDHLIRLF 354 (357)
T ss_pred ccCCCccccChhHHhccCCCceEEecceEE-eHHHHHHHHHhcCCCCccCCcchHHHHHHHh
Confidence 334445669999999988866654 48888 99998876 7999865543 3455555
No 49
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.0039 Score=56.92 Aligned_cols=47 Identities=28% Similarity=0.752 Sum_probs=40.3
Q ss_pred cccccccceecccccceEEecCCCccccccchhcc----CCCccCcccccce
Q 019194 291 RVMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQV 338 (344)
Q Consensus 291 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~~ 338 (344)
...+..|-||.....+.++..|||.| |..|+..- ..|++|-+.+.++
T Consensus 238 ~~~Pf~c~icr~~f~~pVvt~c~h~f-c~~ca~~~~qk~~~c~vC~~~t~g~ 288 (313)
T KOG1813|consen 238 ELLPFKCFICRKYFYRPVVTKCGHYF-CEVCALKPYQKGEKCYVCSQQTHGS 288 (313)
T ss_pred ccCCccccccccccccchhhcCCcee-ehhhhccccccCCcceecccccccc
Confidence 34466899999999999999999999 99998864 5899999987654
No 50
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=95.36 E-value=0.0058 Score=45.79 Aligned_cols=29 Identities=28% Similarity=0.709 Sum_probs=23.9
Q ss_pred eEEecCCCccccccchhcc-------CCCccCccccc
Q 019194 307 AVFVPCGHMCCCIICSWHL-------TNCPLCRRRID 336 (344)
Q Consensus 307 ~~~~pCgH~~~C~~C~~~~-------~~CP~CR~~i~ 336 (344)
+++-.|+|.| ...|+.++ +.||+||++..
T Consensus 47 lv~g~C~H~F-H~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 47 LVWGKCSHNF-HMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred eeeccCccHH-HHHHHHHHHccccCCCCCCCcCCeee
Confidence 3555899999 78999987 58999999764
No 51
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.007 Score=54.54 Aligned_cols=47 Identities=23% Similarity=0.644 Sum_probs=36.2
Q ss_pred Ccccccccceeccccc----------ceEEecCCCccccccchhcc------CCCccCcccccc
Q 019194 290 DRVMPDLCVICLEQEY----------NAVFVPCGHMCCCIICSWHL------TNCPLCRRRIDQ 337 (344)
Q Consensus 290 ~~~~~~~C~iC~~~~~----------~~~~~pCgH~~~C~~C~~~~------~~CP~CR~~i~~ 337 (344)
...+++.|.+|-.+-- +..-+.|+|++ -+.|+..| ++||-|+.+|+.
T Consensus 220 khl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvF-HEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 220 KHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVF-HEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CCCCcchhHhhcchheeecchhhhhhhheeeecccch-HHHhhhhheeecCCCCCchHHHHhhH
Confidence 3445679999965421 34457999999 79999988 799999998864
No 52
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.06 E-value=0.038 Score=50.84 Aligned_cols=46 Identities=17% Similarity=0.357 Sum_probs=36.2
Q ss_pred cccccccceecccc----cceEEecCCCccccccchhccC---CCccCcccccc
Q 019194 291 RVMPDLCVICLEQE----YNAVFVPCGHMCCCIICSWHLT---NCPLCRRRIDQ 337 (344)
Q Consensus 291 ~~~~~~C~iC~~~~----~~~~~~pCgH~~~C~~C~~~~~---~CP~CR~~i~~ 337 (344)
......|+|..... +-+.+.||||++ +..+...+. .||+|-.++..
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~-s~~alke~k~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVF-SEKALKELKKSKKCPVCGKPFTE 162 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEe-eHHHHHhhcccccccccCCcccc
Confidence 34566999997543 345666999999 899999886 89999998764
No 53
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=94.04 E-value=0.01 Score=60.62 Aligned_cols=44 Identities=23% Similarity=0.428 Sum_probs=31.6
Q ss_pred ccceecccccceE---EecCCCccccccchhcc----CCCccCcccccceee
Q 019194 296 LCVICLEQEYNAV---FVPCGHMCCCIICSWHL----TNCPLCRRRIDQVVR 340 (344)
Q Consensus 296 ~C~iC~~~~~~~~---~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~~~~ 340 (344)
.|.+|+..-.+-. =.+|+|.| |..|...| ++||+||..+..++.
T Consensus 125 ~CP~Ci~s~~DqL~~~~k~c~H~F-C~~Ci~sWsR~aqTCPiDR~EF~~v~V 175 (1134)
T KOG0825|consen 125 QCPNCLKSCNDQLEESEKHTAHYF-CEECVGSWSRCAQTCPVDRGEFGEVKV 175 (1134)
T ss_pred hhhHHHHHHHHHhhcccccccccc-HHHHhhhhhhhcccCchhhhhhheeee
Confidence 5666665443322 23899998 99999998 699999987766543
No 54
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=93.63 E-value=0.038 Score=53.90 Aligned_cols=47 Identities=32% Similarity=0.695 Sum_probs=39.6
Q ss_pred ccccccceecccccceEE-ecCCCccccccchhcc----CCCccCccccccee
Q 019194 292 VMPDLCVICLEQEYNAVF-VPCGHMCCCIICSWHL----TNCPLCRRRIDQVV 339 (344)
Q Consensus 292 ~~~~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~----~~CP~CR~~i~~~~ 339 (344)
+++..|.+|...-.+.+- ..|||.| |..|...+ +.||.|++.+....
T Consensus 19 ~~~l~C~~C~~vl~~p~~~~~cgh~f-C~~C~~~~~~~~~~cp~~~~~~~~~~ 70 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDPVQTTTCGHRF-CAGCLLESLSNHQKCPVCRQELTQAE 70 (391)
T ss_pred cccccCccccccccCCCCCCCCCCcc-cccccchhhccCcCCcccccccchhh
Confidence 445699999999988887 5999999 99999987 58999998876543
No 55
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=93.57 E-value=0.017 Score=53.11 Aligned_cols=45 Identities=27% Similarity=0.703 Sum_probs=32.1
Q ss_pred cccceecccccc-eEEecCCCccccccchhcc--CCCccCcccccceee
Q 019194 295 DLCVICLEQEYN-AVFVPCGHMCCCIICSWHL--TNCPLCRRRIDQVVR 340 (344)
Q Consensus 295 ~~C~iC~~~~~~-~~~~pCgH~~~C~~C~~~~--~~CP~CR~~i~~~~~ 340 (344)
.-|.-|--.-.- -.++||.|+| |.+|+..- +.||.|-.+|.++..
T Consensus 91 HfCd~Cd~PI~IYGRmIPCkHvF-Cl~CAr~~~dK~Cp~C~d~VqrIeq 138 (389)
T KOG2932|consen 91 HFCDRCDFPIAIYGRMIPCKHVF-CLECARSDSDKICPLCDDRVQRIEQ 138 (389)
T ss_pred EeecccCCcceeeecccccchhh-hhhhhhcCccccCcCcccHHHHHHH
Confidence 356666433222 2357999999 99998876 699999988876543
No 56
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.37 E-value=0.023 Score=58.92 Aligned_cols=40 Identities=33% Similarity=0.802 Sum_probs=34.8
Q ss_pred cccceecccccceEEecCCCccccccchhcc------CCCccCccccc
Q 019194 295 DLCVICLEQEYNAVFVPCGHMCCCIICSWHL------TNCPLCRRRID 336 (344)
Q Consensus 295 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~------~~CP~CR~~i~ 336 (344)
..|.+|++ +..+++.+|||.+ |.+|.... ..||+||..+.
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~-c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDF-CVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc-cccceeecccchH-HHHHHHhccccccCCCCcHHHHHHH
Confidence 68999999 8888899999999 99997765 47999998764
No 57
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.06 E-value=0.036 Score=53.03 Aligned_cols=40 Identities=30% Similarity=0.660 Sum_probs=31.7
Q ss_pred ccccceeccccc---ceEEecCCCccccccchhcc------------CCCccCccc
Q 019194 294 PDLCVICLEQEY---NAVFVPCGHMCCCIICSWHL------------TNCPLCRRR 334 (344)
Q Consensus 294 ~~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~~------------~~CP~CR~~ 334 (344)
...|.||++... ...++||+|++ |..|.... -+||-|..+
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv~-Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHVF-CKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred cccceeeehhhcCcceeeecccchHH-HHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 458999998764 47899999999 99998764 278877644
No 58
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=92.53 E-value=0.05 Score=36.54 Aligned_cols=36 Identities=25% Similarity=0.729 Sum_probs=27.9
Q ss_pred ccceecc--cccceEEecCC-----Cccccccchhcc------CCCccCc
Q 019194 296 LCVICLE--QEYNAVFVPCG-----HMCCCIICSWHL------TNCPLCR 332 (344)
Q Consensus 296 ~C~iC~~--~~~~~~~~pCg-----H~~~C~~C~~~~------~~CP~CR 332 (344)
.|.||++ ...+..+.||. |.+ -..|..+| ..||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~v-H~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYV-HQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHH-HHHHHHHHHHHcCCCcCCCCC
Confidence 4889996 55677788996 555 68999988 4799995
No 59
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=91.59 E-value=0.084 Score=49.37 Aligned_cols=44 Identities=27% Similarity=0.694 Sum_probs=36.1
Q ss_pred ccccceecccccceEEe-cCCCccccccchhcc-CCCccCcccccce
Q 019194 294 PDLCVICLEQEYNAVFV-PCGHMCCCIICSWHL-TNCPLCRRRIDQV 338 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~-~~CP~CR~~i~~~ 338 (344)
-..|+||...-.-.++- +=||+. |..|..++ .+||.||.++..+
T Consensus 48 lleCPvC~~~l~~Pi~QC~nGHla-CssC~~~~~~~CP~Cr~~~g~~ 93 (299)
T KOG3002|consen 48 LLDCPVCFNPLSPPIFQCDNGHLA-CSSCRTKVSNKCPTCRLPIGNI 93 (299)
T ss_pred hccCchhhccCcccceecCCCcEe-hhhhhhhhcccCCccccccccH
Confidence 34899999998888873 348998 99999665 7999999998743
No 60
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=91.33 E-value=0.048 Score=53.64 Aligned_cols=41 Identities=22% Similarity=0.635 Sum_probs=35.6
Q ss_pred ccccceecccccceEEecCCCccccccchhcc---------CCCccCcccc
Q 019194 294 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHL---------TNCPLCRRRI 335 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~---------~~CP~CR~~i 335 (344)
...|-+|.+...+.+...|.|.| |.-|.... .+||.|-...
T Consensus 536 ~~~C~lc~d~aed~i~s~ChH~F-CrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 536 EVECGLCHDPAEDYIESSCHHKF-CRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred ceeecccCChhhhhHhhhhhHHH-HHHHHHHHHHhhhcccCCCCccccccc
Confidence 45899999999999999999999 99998654 4899998654
No 61
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=91.01 E-value=0.56 Score=36.47 Aligned_cols=30 Identities=27% Similarity=0.512 Sum_probs=22.2
Q ss_pred cccccceeccccc--ceEEecCCCccccccchh
Q 019194 293 MPDLCVICLEQEY--NAVFVPCGHMCCCIICSW 323 (344)
Q Consensus 293 ~~~~C~iC~~~~~--~~~~~pCgH~~~C~~C~~ 323 (344)
+...|.+|...-. ..++.||||++ ...|..
T Consensus 77 ~~~~C~vC~k~l~~~~f~~~p~~~v~-H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNSVFVVFPCGHVV-HYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCCceEEEeCCCeEE-eccccc
Confidence 3457999987644 35556999998 788875
No 62
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=90.79 E-value=0.09 Score=57.41 Aligned_cols=43 Identities=28% Similarity=0.916 Sum_probs=33.7
Q ss_pred ccccceecccc---cceEEecCCCccccccchhcc--------------CCCccCcccccc
Q 019194 294 PDLCVICLEQE---YNAVFVPCGHMCCCIICSWHL--------------TNCPLCRRRIDQ 337 (344)
Q Consensus 294 ~~~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~--------------~~CP~CR~~i~~ 337 (344)
.+.|+||+.+. .-++=+.|+|+| -..|.... -.||+|.++|+-
T Consensus 3486 DDmCmICFTE~L~AAP~IqL~C~HiF-HlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3486 DDMCMICFTEALSAAPAIQLDCSHIF-HLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred CceEEEEehhhhCCCcceecCCccch-hHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 45899999875 346778999999 67776643 379999999875
No 63
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.82 E-value=0.17 Score=45.28 Aligned_cols=42 Identities=24% Similarity=0.413 Sum_probs=33.4
Q ss_pred ccccceecccccc----eEEecCCCccccccchhcc----CCCccCccccc
Q 019194 294 PDLCVICLEQEYN----AVFVPCGHMCCCIICSWHL----TNCPLCRRRID 336 (344)
Q Consensus 294 ~~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~ 336 (344)
...|++|.+.-.| +++-||||++ |..|..++ ..||+|-.+..
T Consensus 221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv-~~ecvEklir~D~v~pv~d~plk 270 (303)
T KOG3039|consen 221 RYICPVTRDTLTNTTPCAVLRPSGHVV-TKECVEKLIRKDMVDPVTDKPLK 270 (303)
T ss_pred ceecccchhhhcCccceEEeccCCcEe-eHHHHHHhccccccccCCCCcCc
Confidence 3589999875443 4556999999 99999988 58999988764
No 64
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=89.67 E-value=0.1 Score=49.92 Aligned_cols=43 Identities=28% Similarity=0.731 Sum_probs=0.0
Q ss_pred ccccceecc-------------------cccceEEecCCCccccccchhcc-------------CCCccCcccccc
Q 019194 294 PDLCVICLE-------------------QEYNAVFVPCGHMCCCIICSWHL-------------TNCPLCRRRIDQ 337 (344)
Q Consensus 294 ~~~C~iC~~-------------------~~~~~~~~pCgH~~~C~~C~~~~-------------~~CP~CR~~i~~ 337 (344)
...|++|+. .+-+..|.||||++ -...+.-| ..||.|-.++..
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~-SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVC-SEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeeccccccc-chhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 458999985 23456788999998 34554444 489999999875
No 65
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=88.72 E-value=0.1 Score=47.89 Aligned_cols=42 Identities=33% Similarity=0.675 Sum_probs=30.3
Q ss_pred ccccceeccccc---ceEEecCCCccccccchhcc---------------------------CCCccCccccc
Q 019194 294 PDLCVICLEQEY---NAVFVPCGHMCCCIICSWHL---------------------------TNCPLCRRRID 336 (344)
Q Consensus 294 ~~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~~---------------------------~~CP~CR~~i~ 336 (344)
...|+||+-... ..+..+|-|-+.| .|.... ..||+||.+|.
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~-~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYMHF-ACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 347999876543 3667899999854 786542 26999998875
No 66
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=88.42 E-value=0.12 Score=54.19 Aligned_cols=41 Identities=29% Similarity=0.694 Sum_probs=29.5
Q ss_pred cccceeccccc-------ceEEecCCCccccccchhcc------CCCccCccccc
Q 019194 295 DLCVICLEQEY-------NAVFVPCGHMCCCIICSWHL------TNCPLCRRRID 336 (344)
Q Consensus 295 ~~C~iC~~~~~-------~~~~~pCgH~~~C~~C~~~~------~~CP~CR~~i~ 336 (344)
..|+|||.--. +-.---|.|-| ...|.-+| .+||+||..|+
T Consensus 1470 eECaICYsvL~~vdr~lPskrC~TCknKF-H~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1470 EECAICYSVLDMVDRSLPSKRCATCKNKF-HTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred chhhHHHHHHHHHhccCCccccchhhhhh-hHHHHHHHHHhcCCCCCCccccccc
Confidence 37999995211 11122588998 68999988 59999998875
No 67
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=87.60 E-value=0.34 Score=46.37 Aligned_cols=42 Identities=29% Similarity=0.740 Sum_probs=29.8
Q ss_pred cccccceecccccceEEe-cC---------------------CCccccccchhcc-----------------CCCccCcc
Q 019194 293 MPDLCVICLEQEYNAVFV-PC---------------------GHMCCCIICSWHL-----------------TNCPLCRR 333 (344)
Q Consensus 293 ~~~~C~iC~~~~~~~~~~-pC---------------------gH~~~C~~C~~~~-----------------~~CP~CR~ 333 (344)
+.+.|.-|+....++.+. .| +-++ |.+|..+| ..||.||+
T Consensus 270 e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmW-C~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa 348 (358)
T PF10272_consen 270 ELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMW-CLECMGKWFASRQDQQHPETWLSGKCPCPTCRA 348 (358)
T ss_pred ccCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchH-HHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcc
Confidence 345799999988887765 34 2233 77777765 37999998
Q ss_pred cc
Q 019194 334 RI 335 (344)
Q Consensus 334 ~i 335 (344)
++
T Consensus 349 ~F 350 (358)
T PF10272_consen 349 KF 350 (358)
T ss_pred cc
Confidence 75
No 68
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=87.26 E-value=0.19 Score=40.71 Aligned_cols=46 Identities=28% Similarity=0.621 Sum_probs=37.6
Q ss_pred ccccceecccccceEEe----cCCCccccccchhcc-------CCCccCcccccceee
Q 019194 294 PDLCVICLEQEYNAVFV----PCGHMCCCIICSWHL-------TNCPLCRRRIDQVVR 340 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~----pCgH~~~C~~C~~~~-------~~CP~CR~~i~~~~~ 340 (344)
-..|-||.+...+-.|+ =||-.. |..|...+ +.||+|+.++.+.-.
T Consensus 80 lYeCnIC~etS~ee~FLKPneCCgY~i-Cn~Cya~LWK~~~~ypvCPvCkTSFKss~~ 136 (140)
T PF05290_consen 80 LYECNICKETSAEERFLKPNECCGYSI-CNACYANLWKFCNLYPVCPVCKTSFKSSSS 136 (140)
T ss_pred ceeccCcccccchhhcCCcccccchHH-HHHHHHHHHHHcccCCCCCccccccccccc
Confidence 35899999999998888 378666 99998876 799999999876544
No 69
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=86.77 E-value=0.19 Score=46.94 Aligned_cols=42 Identities=38% Similarity=0.910 Sum_probs=31.1
Q ss_pred ccccceecccc----cceEEecCCCccccccchhcc-----CCCccCccccc
Q 019194 294 PDLCVICLEQE----YNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRID 336 (344)
Q Consensus 294 ~~~C~iC~~~~----~~~~~~pCgH~~~C~~C~~~~-----~~CP~CR~~i~ 336 (344)
.+.|+.|++.. ++..=.|||-.. |.-|...+ .+||-||....
T Consensus 14 ed~cplcie~mditdknf~pc~cgy~i-c~fc~~~irq~lngrcpacrr~y~ 64 (480)
T COG5175 14 EDYCPLCIEPMDITDKNFFPCPCGYQI-CQFCYNNIRQNLNGRCPACRRKYD 64 (480)
T ss_pred cccCcccccccccccCCcccCCcccHH-HHHHHHHHHhhccCCChHhhhhcc
Confidence 34699999864 333334778777 89998876 48999998764
No 70
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=85.89 E-value=0.4 Score=44.46 Aligned_cols=45 Identities=24% Similarity=0.590 Sum_probs=28.8
Q ss_pred ccccccceeccc-------------------ccceEEecCCCccccccchhcc-------------CCCccCcccccc
Q 019194 292 VMPDLCVICLEQ-------------------EYNAVFVPCGHMCCCIICSWHL-------------TNCPLCRRRIDQ 337 (344)
Q Consensus 292 ~~~~~C~iC~~~-------------------~~~~~~~pCgH~~~C~~C~~~~-------------~~CP~CR~~i~~ 337 (344)
.....|++|+.. +-+-.|-||||+|. ..=..-| ..||.|-+....
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~s-ekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCS-EKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccc-hhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 345589999852 23345779999972 2222212 479999988764
No 71
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=84.74 E-value=0.41 Score=35.20 Aligned_cols=40 Identities=25% Similarity=0.430 Sum_probs=29.2
Q ss_pred ccceecc---cccc--eEEecCCCccccccchhcc----CCCccCccccc
Q 019194 296 LCVICLE---QEYN--AVFVPCGHMCCCIICSWHL----TNCPLCRRRID 336 (344)
Q Consensus 296 ~C~iC~~---~~~~--~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~ 336 (344)
.|+-|.. +..+ ++.--|.|.| -.-|+.+| ..||+||++..
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaF-H~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAF-HDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHH-HHHHHHHHHhhCCCCCCCCceeE
Confidence 5666765 2233 3334899999 78999998 58999999754
No 72
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=84.66 E-value=0.86 Score=42.27 Aligned_cols=49 Identities=4% Similarity=-0.182 Sum_probs=41.3
Q ss_pred cccccceecccccceEEecCCCccccccchhcc--CCCccCcccccceeec
Q 019194 293 MPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL--TNCPLCRRRIDQVVRT 341 (344)
Q Consensus 293 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~--~~CP~CR~~i~~~~~~ 341 (344)
....|.+|-.+--..++.||||...|.+|+..- ..||+|..-+-..++|
T Consensus 342 s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~s~~~~~~~c~~~~~~~~~i 392 (394)
T KOG2113|consen 342 SSLKGTSAGFGLLSTIWSGGNMNLSPGSLASASASPTSSTCDHNDHTLVPI 392 (394)
T ss_pred hhcccccccCceeeeEeecCCcccChhhhhhcccCCccccccccceeeeec
Confidence 345899999999999999999999999998854 7999999876666654
No 73
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=83.94 E-value=0.24 Score=44.15 Aligned_cols=38 Identities=26% Similarity=0.737 Sum_probs=28.1
Q ss_pred cccceecccc---cceEEe--c-CCCccccccchhcc-----CCCc--cCcc
Q 019194 295 DLCVICLEQE---YNAVFV--P-CGHMCCCIICSWHL-----TNCP--LCRR 333 (344)
Q Consensus 295 ~~C~iC~~~~---~~~~~~--p-CgH~~~C~~C~~~~-----~~CP--~CR~ 333 (344)
..|++|.+.. .++.++ | |-|.. |.+|...+ ..|| -|..
T Consensus 11 ~~CPvCksDrYLnPdik~linPECyHrm-CESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 11 RRCPVCKSDRYLNPDIKILINPECYHRM-CESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred ccCCccccccccCCCeEEEECHHHHHHH-HHHHHHHHhcCCCCCCCCccHHH
Confidence 4899998542 233333 6 99999 99999987 5899 7764
No 74
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=83.34 E-value=0.17 Score=36.81 Aligned_cols=40 Identities=23% Similarity=0.484 Sum_probs=27.1
Q ss_pred ccceecccccceEE--ecCCCccccccchhcc-------CCCccCccccc
Q 019194 296 LCVICLEQEYNAVF--VPCGHMCCCIICSWHL-------TNCPLCRRRID 336 (344)
Q Consensus 296 ~C~iC~~~~~~~~~--~pCgH~~~C~~C~~~~-------~~CP~CR~~i~ 336 (344)
.|+-|....-++-+ --|.|.| -.-|+.++ ..||+||+..+
T Consensus 33 ~Cp~Ck~PgDdCPLv~G~C~h~f-h~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 33 CCPDCKLPGDDCPLVWGYCLHAF-HAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred cCCCCcCCCCCCccHHHHHHHHH-HHHHHHHHhcCccccccCCcchheeE
Confidence 45555444444322 2799999 68999887 47999998753
No 75
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=82.65 E-value=0.36 Score=34.96 Aligned_cols=42 Identities=24% Similarity=0.583 Sum_probs=19.2
Q ss_pred cccceeccccc-c---eE-Ee---cCCCccccccchhcc---------------CCCccCcccccc
Q 019194 295 DLCVICLEQEY-N---AV-FV---PCGHMCCCIICSWHL---------------TNCPLCRRRIDQ 337 (344)
Q Consensus 295 ~~C~iC~~~~~-~---~~-~~---pCgH~~~C~~C~~~~---------------~~CP~CR~~i~~ 337 (344)
..|.||++..- + .. +- .|++.+ -..|...| -+||.|+.+|.-
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~f-H~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKF-HLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B--SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHH-HHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 36999997533 1 11 21 677777 67888776 269999999863
No 76
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=82.06 E-value=0.49 Score=31.53 Aligned_cols=38 Identities=32% Similarity=0.805 Sum_probs=16.3
Q ss_pred cceecccc--cceEEe--cCCCccccccchhcc-----CCCccCcccc
Q 019194 297 CVICLEQE--YNAVFV--PCGHMCCCIICSWHL-----TNCPLCRRRI 335 (344)
Q Consensus 297 C~iC~~~~--~~~~~~--pCgH~~~C~~C~~~~-----~~CP~CR~~i 335 (344)
|++|.+.. ++.-|. +||+.. |..|...+ ..||-||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~I-C~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQI-CRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS-----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcH-HHHHHHHHHhccCCCCCCCCCCC
Confidence 44554432 223344 678887 99997765 4799999874
No 77
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=82.03 E-value=0.27 Score=45.93 Aligned_cols=46 Identities=24% Similarity=0.476 Sum_probs=36.6
Q ss_pred ccccceecccccceE-EecCCCccccccchhcc----CCCccCcccccceee
Q 019194 294 PDLCVICLEQEYNAV-FVPCGHMCCCIICSWHL----TNCPLCRRRIDQVVR 340 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~-~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~~~~ 340 (344)
...|.+|-.=-.++. +.-|-|.| |..|+.+. ..||.|...|-...+
T Consensus 15 ~itC~LC~GYliDATTI~eCLHTF-CkSCivk~l~~~~~CP~C~i~ih~t~p 65 (331)
T KOG2660|consen 15 HITCRLCGGYLIDATTITECLHTF-CKSCIVKYLEESKYCPTCDIVIHKTHP 65 (331)
T ss_pred ceehhhccceeecchhHHHHHHHH-HHHHHHHHHHHhccCCccceeccCccc
Confidence 458999987766654 44899999 99998875 799999998876543
No 78
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=81.52 E-value=0.52 Score=31.10 Aligned_cols=42 Identities=19% Similarity=0.615 Sum_probs=24.7
Q ss_pred ccceecccccceEEecCCCccccccchhcc----CCCccCccccccee
Q 019194 296 LCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQVV 339 (344)
Q Consensus 296 ~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~~~ 339 (344)
.|.-|.-..++.+ .|.--++|..|...| ..||+|..++...+
T Consensus 4 nCKsCWf~~k~Li--~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtki 49 (50)
T PF03854_consen 4 NCKSCWFANKGLI--KCSDHYLCLNCLTLMLSRSDRCPICGKPLPTKI 49 (50)
T ss_dssp ---SS-S--SSEE--E-SS-EEEHHHHHHT-SSSSEETTTTEE----S
T ss_pred cChhhhhcCCCee--eecchhHHHHHHHHHhccccCCCcccCcCcccc
Confidence 5888877766655 588777899999987 68999999887654
No 79
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=79.09 E-value=0.8 Score=31.75 Aligned_cols=38 Identities=24% Similarity=0.392 Sum_probs=24.6
Q ss_pred ccccccceecccccceEE-ecCCCccccccchhcc------CCCcc
Q 019194 292 VMPDLCVICLEQEYNAVF-VPCGHMCCCIICSWHL------TNCPL 330 (344)
Q Consensus 292 ~~~~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~------~~CP~ 330 (344)
.....|++.+....+.+. ..|||.| ..+.+..+ ..||+
T Consensus 9 ~~~~~CPiT~~~~~~PV~s~~C~H~f-ek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDPVKSKKCGHTF-EKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSEEEESSS--EE-EHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhCCcCcCCCCCee-cHHHHHHHHHhcCCCCCCC
Confidence 345689999999999876 4999999 77777765 37998
No 80
>cd04488 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG. RecG is a branched-DNA-specific helicase, which catalyzes the interconversion of a DNA replication fork to a four-stranded (Holliday) junction in vivo and in vitro. This interconversion provides a route to repair stalled forks. The RecG monomer contains three domains. The N-terminal domain is named for its wedge structure, and may provide the specificity of RecG for binding branched-DNA structures. During the reversal of fork to Holliday junction, the wedge domain is fixed at the junction of the fork where the leading and lagging strand duplex arms meet, and is thought to promote the unwinding of the nascent leading and lagging strands. In order to form the Holliday junction, these nascent strands would be annealed, and the parental strands reannealed. The wedge domain may also be a processivity factor of RecG on these branched cha
Probab=77.56 E-value=6.6 Score=27.58 Aligned_cols=31 Identities=29% Similarity=0.536 Sum_probs=24.6
Q ss_pred eeecccCCCceeeEeeeEEecCCCceEEeCCC
Q 019194 168 RIERLLPTGTSLTVVGEAVKDDIGTVRIQRPH 199 (344)
Q Consensus 168 ~~E~~L~~g~~l~vvGe~~~d~~G~l~i~~P~ 199 (344)
+....+++|+.+++.|.+..- .|.+.|.+|.
T Consensus 41 ~~~~~~~~G~~~~v~Gkv~~~-~~~~qi~~P~ 71 (75)
T cd04488 41 YLKKQLPPGTRVRVSGKVKRF-RGGLQIVHPE 71 (75)
T ss_pred HHHhcCCCCCEEEEEEEEeec-CCeeEEeCCc
Confidence 344669999999999997654 6788888885
No 81
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.68 E-value=0.7 Score=46.83 Aligned_cols=38 Identities=42% Similarity=0.857 Sum_probs=30.5
Q ss_pred ccccceecc----cccceEEecCCCccccccchhcc--CCCccCcc
Q 019194 294 PDLCVICLE----QEYNAVFVPCGHMCCCIICSWHL--TNCPLCRR 333 (344)
Q Consensus 294 ~~~C~iC~~----~~~~~~~~pCgH~~~C~~C~~~~--~~CP~CR~ 333 (344)
-..|.||+. .....+++-|||.. |..|...+ ..|| |..
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghti-c~~c~~~lyn~scp-~~~ 54 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTI-CGHCVQLLYNASCP-TKR 54 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchH-HHHHHHhHhhccCC-CCc
Confidence 447999964 45568889999999 99999998 6899 653
No 82
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=74.92 E-value=0.79 Score=37.43 Aligned_cols=31 Identities=32% Similarity=0.638 Sum_probs=25.3
Q ss_pred ccccceecccccc---eEEecCC------Cccccccchhcc
Q 019194 294 PDLCVICLEQEYN---AVFVPCG------HMCCCIICSWHL 325 (344)
Q Consensus 294 ~~~C~iC~~~~~~---~~~~pCg------H~~~C~~C~~~~ 325 (344)
...|.||+++-.+ ++.++|| |++ |.+|..+|
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmf-c~~C~~rw 65 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMF-CADCDKRW 65 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHH-HHHHHHHH
Confidence 3479999987554 7778998 777 99999998
No 83
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=73.92 E-value=1.1 Score=41.24 Aligned_cols=38 Identities=32% Similarity=0.603 Sum_probs=30.8
Q ss_pred cccceecccccceEEe-cCCCccccccchhcc-----CCCccCcc
Q 019194 295 DLCVICLEQEYNAVFV-PCGHMCCCIICSWHL-----TNCPLCRR 333 (344)
Q Consensus 295 ~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~-----~~CP~CR~ 333 (344)
..|+.|..--++.+-. -|||.+ |.+|+... -.||.|..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~f-c~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTF-CDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchH-HHHHHhhhhhhccccCCCccc
Confidence 5899998777776666 578998 99998853 58999987
No 84
>PHA03096 p28-like protein; Provisional
Probab=71.83 E-value=1.2 Score=41.45 Aligned_cols=30 Identities=30% Similarity=0.563 Sum_probs=24.0
Q ss_pred cccceecccc--------cceEEecCCCccccccchhcc
Q 019194 295 DLCVICLEQE--------YNAVFVPCGHMCCCIICSWHL 325 (344)
Q Consensus 295 ~~C~iC~~~~--------~~~~~~pCgH~~~C~~C~~~~ 325 (344)
..|-||+++. +..++-.|-|.+ |-.|...|
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~f-c~~ci~~w 216 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEF-NIFCIKIW 216 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHH-HHHHHHHH
Confidence 4799999754 334566999999 99999987
No 85
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.30 E-value=9.2 Score=36.42 Aligned_cols=61 Identities=13% Similarity=0.034 Sum_probs=47.5
Q ss_pred EeeeeeeecccCCCceeeEeeeEEecCCCceEEeCCCCCCeeeecCCHHHHHHHhhhhhHHHH
Q 019194 163 MLGVKRIERLLPTGTSLTVVGEAVKDDIGTVRIQRPHKGPFYVSPKTIDELIENLGKWARWYK 225 (344)
Q Consensus 163 ~~g~r~~E~~L~~g~~l~vvGe~~~d~~G~l~i~~P~~~~f~lS~~~~~~L~~~l~~~a~~~~ 225 (344)
+.|-+|.+.+. .++-++.+|-+... .+-..+.-...++|+||....|..+++.++..+...
T Consensus 209 ~~g~~~v~~s~-~d~LIsr~g~~s~~-~kv~~~~~~~~~~ills~~~~d~~led~r~~r~~l~ 269 (355)
T KOG1571|consen 209 MQGPLYVTKSA-ADRLISREGDLSFF-VKVNGMVFGTLGVILLSFIVKDNYLEDDRRQRRELV 269 (355)
T ss_pred ccCcceeeccc-hhhHHHhhccceee-eeecceeeeeeeEEeehHHHHHHHHHHHHHHHHHHH
Confidence 45788999988 99999999998665 444445666677999999999999998777666544
No 86
>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands. The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See IPR004364 from INTERPRO). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule 6.1.1 from EC. This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.; GO: 0003676 nucleic acid binding; PDB: 1BBU_A 1KRS_A 1BBW_A 1KRT_A 1EQR_B 1IL2_B 1C0A_A 3KFU_A 1EOV_A 1ASY_A ....
Probab=70.27 E-value=8.1 Score=27.32 Aligned_cols=57 Identities=32% Similarity=0.373 Sum_probs=36.5
Q ss_pred eeeccEeeEEEECCceeEEEecCCCCccceeeeeeeeeecCcccccccccccccceEEeeeeeeecccCCCceeeEeeeE
Q 019194 106 LSMSKEVPWYLDDGTGRAFVVGARGATGFVLTVGSEVFEESGRSLVRGTLDYLQGLKMLGVKRIERLLPTGTSLTVVGEA 185 (344)
Q Consensus 106 ~~~~~~~pF~L~D~tg~v~V~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~r~~E~~L~~g~~l~vvGe~ 185 (344)
..+..-.-|.|+|+||.+.+.= |.. .+...-+.|.+|+.+.+.|.+
T Consensus 12 ~~~~~~~~~~l~D~tg~i~~~~---------------~~~-------------------~~~~~~~~l~~g~~v~v~G~v 57 (75)
T PF01336_consen 12 RSGGKIVFFTLEDGTGSIQVVF---------------FNE-------------------EYERFREKLKEGDIVRVRGKV 57 (75)
T ss_dssp EEETTEEEEEEEETTEEEEEEE---------------ETH-------------------HHHHHHHTS-TTSEEEEEEEE
T ss_pred cCCCCEEEEEEEECCccEEEEE---------------ccH-------------------HhhHHhhcCCCCeEEEEEEEE
Confidence 3445555688999999887751 110 111122458899999999998
Q ss_pred EecCCCceEEe
Q 019194 186 VKDDIGTVRIQ 196 (344)
Q Consensus 186 ~~d~~G~l~i~ 196 (344)
...+++.+.|.
T Consensus 58 ~~~~~~~~~l~ 68 (75)
T PF01336_consen 58 KRYNGGELELI 68 (75)
T ss_dssp EEETTSSEEEE
T ss_pred EEECCccEEEE
Confidence 88855556654
No 87
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=68.74 E-value=37 Score=23.77 Aligned_cols=23 Identities=13% Similarity=0.105 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019194 243 AIHYILQRKRRWELHRRVLAAAA 265 (344)
Q Consensus 243 ~~r~~~~~~~~~~~~~~~~~~~~ 265 (344)
..++++.+++.+++++++++.++
T Consensus 40 ~~~~~~~r~~~~~~~k~l~~le~ 62 (68)
T PF06305_consen 40 LPSRLRLRRRIRRLRKELKKLEK 62 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666665554
No 88
>PLN02189 cellulose synthase
Probab=68.37 E-value=2.9 Score=45.25 Aligned_cols=44 Identities=30% Similarity=0.665 Sum_probs=30.4
Q ss_pred cccccceecccc----cceEEecCC---Cccccccchhcc-----CCCccCcccccc
Q 019194 293 MPDLCVICLEQE----YNAVFVPCG---HMCCCIICSWHL-----TNCPLCRRRIDQ 337 (344)
Q Consensus 293 ~~~~C~iC~~~~----~~~~~~pCg---H~~~C~~C~~~~-----~~CP~CR~~i~~ 337 (344)
....|.||-+.. ..-.|+.|. -- .|..|+.-- +.||.|++...+
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fp-vCr~Cyeyer~eg~q~CpqCkt~Y~r 88 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFP-VCRPCYEYERREGTQNCPQCKTRYKR 88 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCc-cccchhhhhhhcCCccCcccCCchhh
Confidence 345899999873 233556664 22 599998533 789999988764
No 89
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.05 E-value=8.5 Score=31.36 Aligned_cols=39 Identities=33% Similarity=0.844 Sum_probs=22.9
Q ss_pred ccccceecccccceEEecCCCcc------ccccchhcc--------CCCccCcccc
Q 019194 294 PDLCVICLEQEYNAVFVPCGHMC------CCIICSWHL--------TNCPLCRRRI 335 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pCgH~~------~C~~C~~~~--------~~CP~CR~~i 335 (344)
...|-||+...- .--|||.| +|..|--+. -.|-.|+...
T Consensus 65 datC~IC~KTKF---ADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q 117 (169)
T KOG3799|consen 65 DATCGICHKTKF---ADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQ 117 (169)
T ss_pred Ccchhhhhhccc---ccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHHH
Confidence 448999985431 12689986 255553332 2577777543
No 90
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=66.79 E-value=2.6 Score=39.22 Aligned_cols=48 Identities=15% Similarity=0.244 Sum_probs=38.7
Q ss_pred ccccceecccccceEEecCCCccccccchhcc-----CCCccCcccccceeec
Q 019194 294 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQVVRT 341 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~CR~~i~~~~~~ 341 (344)
...|++|+.+..-+...+|||-.+|..|.... ..||+|-..+.+...+
T Consensus 136 ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ra~~i 188 (394)
T KOG2113|consen 136 TIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVTRAGQI 188 (394)
T ss_pred ccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhhhhhcc
Confidence 44799999999999999999999999996655 4599998766654443
No 91
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=65.73 E-value=4.2 Score=37.98 Aligned_cols=48 Identities=21% Similarity=0.526 Sum_probs=24.4
Q ss_pred ccccceecccccceEEecC---C--Cccccccchhcc----CCCccCcccccceeecc
Q 019194 294 PDLCVICLEQEYNAVFVPC---G--HMCCCIICSWHL----TNCPLCRRRIDQVVRTF 342 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pC---g--H~~~C~~C~~~~----~~CP~CR~~i~~~~~~y 342 (344)
...|++|-+.|.-.++..= | |+. |.-|...| ..||.|-..-......|
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~-Cs~C~t~W~~~R~~Cp~Cg~~~~~~l~~~ 228 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLH-CSLCGTEWRFVRIKCPYCGNTDHEKLEYF 228 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEE-ETTT--EEE--TTS-TTT---SS-EEE--
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEE-cCCCCCeeeecCCCCcCCCCCCCcceeeE
Confidence 4699999999988887754 3 555 99999998 58999987765554443
No 92
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=63.55 E-value=2.6 Score=32.63 Aligned_cols=24 Identities=25% Similarity=0.510 Sum_probs=20.5
Q ss_pred ecCCCccccccchhcc----CCCccCccc
Q 019194 310 VPCGHMCCCIICSWHL----TNCPLCRRR 334 (344)
Q Consensus 310 ~pCgH~~~C~~C~~~~----~~CP~CR~~ 334 (344)
-.|.|.| -.-|+.+| +.||+|.++
T Consensus 79 G~CNHaF-H~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 79 GVCNHAF-HFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred eecchHH-HHHHHHHHHhhcCcCCCcCcc
Confidence 3899999 68899888 689999875
No 93
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=63.43 E-value=3 Score=38.24 Aligned_cols=30 Identities=33% Similarity=0.700 Sum_probs=25.8
Q ss_pred cccceecccccceEEecCC----Cccccccchhcc
Q 019194 295 DLCVICLEQEYNAVFVPCG----HMCCCIICSWHL 325 (344)
Q Consensus 295 ~~C~iC~~~~~~~~~~pCg----H~~~C~~C~~~~ 325 (344)
.-|.+|.++-.+..|+-|- |-| |+.|...-
T Consensus 269 LcCTLC~ERLEDTHFVQCPSVp~HKF-CFPCSRes 302 (352)
T KOG3579|consen 269 LCCTLCHERLEDTHFVQCPSVPSHKF-CFPCSRES 302 (352)
T ss_pred eeehhhhhhhccCceeecCCCcccce-ecccCHHH
Confidence 4788999999999999885 888 99998753
No 94
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=63.10 E-value=1.4 Score=42.06 Aligned_cols=44 Identities=25% Similarity=0.601 Sum_probs=33.2
Q ss_pred ccccccceecc----cccceEEecCCCccccccchhcc------CCCccCccccc
Q 019194 292 VMPDLCVICLE----QEYNAVFVPCGHMCCCIICSWHL------TNCPLCRRRID 336 (344)
Q Consensus 292 ~~~~~C~iC~~----~~~~~~~~pCgH~~~C~~C~~~~------~~CP~CR~~i~ 336 (344)
+..-.|-.|-+ ++.+.-.+||.|.| ...|...+ ..||.||.-+.
T Consensus 363 e~~L~Cg~CGe~~Glk~e~LqALpCsHIf-H~rCl~e~L~~n~~rsCP~CrklrS 416 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNERLQALPCSHIF-HLRCLQEILENNGTRSCPNCRKLRS 416 (518)
T ss_pred HHhhhhhhhhhhhcCCcccccccchhHHH-HHHHHHHHHHhCCCCCCccHHHHHh
Confidence 34457999975 35567778999999 78998865 68999995443
No 95
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.94 E-value=5.2 Score=28.76 Aligned_cols=35 Identities=17% Similarity=0.137 Sum_probs=22.2
Q ss_pred cchhHHHHHHHHHH-HHHHhccchhhHhhcccccccch
Q 019194 3 PWGGISCCLSGAAL-YLLGRSSGRDAELLKTVTRVNQL 39 (344)
Q Consensus 3 ~~g~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~ 39 (344)
++++++++++|+++ ||+.|++- -+.|++-|+....
T Consensus 7 il~ivl~ll~G~~~G~fiark~~--~k~lk~NPpine~ 42 (71)
T COG3763 7 ILLIVLALLAGLIGGFFIARKQM--KKQLKDNPPINEE 42 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHhhCCCCCHH
Confidence 34555667777775 66666543 3567887776554
No 96
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.62 E-value=6.2 Score=41.64 Aligned_cols=47 Identities=23% Similarity=0.418 Sum_probs=34.0
Q ss_pred cccceecccc-cceEEecCCCccccccchhc-cCCCccCcccccceeecc
Q 019194 295 DLCVICLEQE-YNAVFVPCGHMCCCIICSWH-LTNCPLCRRRIDQVVRTF 342 (344)
Q Consensus 295 ~~C~iC~~~~-~~~~~~pCgH~~~C~~C~~~-~~~CP~CR~~i~~~~~~y 342 (344)
..|..|-..= --.+..-|||.+ ...|... ...||-|+....++++.+
T Consensus 841 skCs~C~~~LdlP~VhF~CgHsy-HqhC~e~~~~~CP~C~~e~~~~m~l~ 889 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFVHFLCGHSY-HQHCLEDKEDKCPKCLPELRGVMDLK 889 (933)
T ss_pred eeecccCCccccceeeeecccHH-HHHhhccCcccCCccchhhhhhHHHH
Confidence 4799996543 335556999999 6788874 479999998666655443
No 97
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=60.58 E-value=40 Score=26.85 Aligned_cols=40 Identities=25% Similarity=0.567 Sum_probs=25.2
Q ss_pred ccccceecccc-----cceEEecCCCccccccchhccC-----CCccCccc
Q 019194 294 PDLCVICLEQE-----YNAVFVPCGHMCCCIICSWHLT-----NCPLCRRR 334 (344)
Q Consensus 294 ~~~C~iC~~~~-----~~~~~~pCgH~~~C~~C~~~~~-----~CP~CR~~ 334 (344)
...|..|.... ....-..|+|.+ |..|....+ .|.+|...
T Consensus 54 ~~~C~~C~~~fg~l~~~~~~C~~C~~~V-C~~C~~~~~~~~~WlC~vC~k~ 103 (118)
T PF02318_consen 54 ERHCARCGKPFGFLFNRGRVCVDCKHRV-CKKCGVYSKKEPIWLCKVCQKQ 103 (118)
T ss_dssp CSB-TTTS-BCSCTSTTCEEETTTTEEE-ETTSEEETSSSCCEEEHHHHHH
T ss_pred CcchhhhCCcccccCCCCCcCCcCCccc-cCccCCcCCCCCCEEChhhHHH
Confidence 45899998652 234555788887 888876541 57777653
No 98
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=60.06 E-value=2.5 Score=43.72 Aligned_cols=42 Identities=31% Similarity=0.732 Sum_probs=35.7
Q ss_pred cccceecccccceEEecCCCccccccchhcc-------CCCccCcccccc
Q 019194 295 DLCVICLEQEYNAVFVPCGHMCCCIICSWHL-------TNCPLCRRRIDQ 337 (344)
Q Consensus 295 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-------~~CP~CR~~i~~ 337 (344)
..|.||.....+.+.+.|-|.+ |..|.... ..||+|+..++.
T Consensus 22 lEc~ic~~~~~~p~~~kc~~~~-l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 22 LECPICLEHVKEPSLLKCDHIF-LKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred ccCCceeEEeeccchhhhhHHH-HhhhhhceeeccCccccchhhhhhhhh
Confidence 3799999999999999999999 89998765 479999976653
No 99
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=58.39 E-value=5.8 Score=37.00 Aligned_cols=31 Identities=26% Similarity=0.541 Sum_probs=19.9
Q ss_pred ccceEEecCCCcccc--ccchhcc----CCCccCccc
Q 019194 304 EYNAVFVPCGHMCCC--IICSWHL----TNCPLCRRR 334 (344)
Q Consensus 304 ~~~~~~~pCgH~~~C--~~C~~~~----~~CP~CR~~ 334 (344)
..-.+++.|||+--- |.|...- .+||+||..
T Consensus 314 ~QP~vYl~CGHV~G~H~WG~~e~~g~~~r~CPmC~~~ 350 (429)
T KOG3842|consen 314 KQPWVYLNCGHVHGYHNWGVRENTGQRERECPMCRVV 350 (429)
T ss_pred cCCeEEEeccccccccccccccccCcccCcCCeeeee
Confidence 345789999998632 2222221 589999963
No 100
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=57.89 E-value=1.9 Score=39.75 Aligned_cols=45 Identities=29% Similarity=0.610 Sum_probs=33.7
Q ss_pred ccceeccc----ccceEEecCCCccccccchhcc----CCCccCcccccceeecc
Q 019194 296 LCVICLEQ----EYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQVVRTF 342 (344)
Q Consensus 296 ~C~iC~~~----~~~~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~~~~~y 342 (344)
.|++|... ...+..++|||.-. ..|...+ -+||+|.. +.....+|
T Consensus 160 ncPic~e~l~~s~~~~~~~~CgH~~h-~~cf~e~~~~~y~CP~C~~-~~d~~~~~ 212 (276)
T KOG1940|consen 160 NCPICKEYLFLSFEDAGVLKCGHYMH-SRCFEEMICEGYTCPICSK-PGDMSHYF 212 (276)
T ss_pred CCchhHHHhccccccCCccCcccchH-HHHHHHHhccCCCCCcccc-hHHHHHHH
Confidence 49999864 45577889999884 7887776 48999998 66555444
No 101
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=57.20 E-value=74 Score=24.06 Aligned_cols=26 Identities=12% Similarity=0.051 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019194 237 FLIAKRAIHYILQRKRRWELHRRVLA 262 (344)
Q Consensus 237 ~ll~~~~~r~~~~~~~~~~~~~~~~~ 262 (344)
++++|..++.++.+++...++.+.++
T Consensus 16 ~i~~y~~~k~~ka~~~~~kL~~en~q 41 (87)
T PF10883_consen 16 LILAYLWWKVKKAKKQNAKLQKENEQ 41 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554444444443
No 102
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=56.94 E-value=4.6 Score=33.96 Aligned_cols=43 Identities=19% Similarity=0.361 Sum_probs=30.1
Q ss_pred cccccceecccccceEEecCCCcc----ccccchhcc------CCCccCccccc
Q 019194 293 MPDLCVICLEQEYNAVFVPCGHMC----CCIICSWHL------TNCPLCRRRID 336 (344)
Q Consensus 293 ~~~~C~iC~~~~~~~~~~pCgH~~----~C~~C~~~~------~~CP~CR~~i~ 336 (344)
.+..|-||++..... .-||.-.. .-.+|...| ..|++|+.+..
T Consensus 7 ~~~~CRIC~~~~~~~-~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 7 MDKCCWICKDEYDVV-TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCeeEecCCCCCCc-cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 345899999887543 35776432 245788877 58999998864
No 103
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=56.20 E-value=5.1 Score=37.84 Aligned_cols=18 Identities=17% Similarity=0.493 Sum_probs=13.6
Q ss_pred ccccccceecccccceEE
Q 019194 292 VMPDLCVICLEQEYNAVF 309 (344)
Q Consensus 292 ~~~~~C~iC~~~~~~~~~ 309 (344)
+...+|++|-|+..-..+
T Consensus 13 dl~ElCPVCGDkVSGYHY 30 (475)
T KOG4218|consen 13 DLGELCPVCGDKVSGYHY 30 (475)
T ss_pred ccccccccccCcccccee
Confidence 345699999999877554
No 104
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=55.42 E-value=5.2 Score=41.91 Aligned_cols=45 Identities=20% Similarity=0.462 Sum_probs=33.9
Q ss_pred ccccccceeccc--ccceEEecCCCcc----ccccchhcc------CCCccCccccc
Q 019194 292 VMPDLCVICLEQ--EYNAVFVPCGHMC----CCIICSWHL------TNCPLCRRRID 336 (344)
Q Consensus 292 ~~~~~C~iC~~~--~~~~~~~pCgH~~----~C~~C~~~~------~~CP~CR~~i~ 336 (344)
+++..|.||..+ +-+..|.||.... ...+|...| ++|-+|..+++
T Consensus 10 ~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~ 66 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK 66 (1175)
T ss_pred ccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence 344689999865 5678899998543 356788887 58999998764
No 105
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.39 E-value=7.6 Score=35.14 Aligned_cols=44 Identities=11% Similarity=0.218 Sum_probs=30.4
Q ss_pred cccccceec----ccccceEEecCCCccccccchhcc--CCCccCcccccc
Q 019194 293 MPDLCVICL----EQEYNAVFVPCGHMCCCIICSWHL--TNCPLCRRRIDQ 337 (344)
Q Consensus 293 ~~~~C~iC~----~~~~~~~~~pCgH~~~C~~C~~~~--~~CP~CR~~i~~ 337 (344)
....|+|=- +..+-+.+++|||++. ..-...+ ..|++|.+.+..
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~S-erAlKeikas~C~~C~a~y~~ 159 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFS-ERALKEIKASVCHVCGAAYQE 159 (293)
T ss_pred ceeecccccceecceEEEEEEeccceecc-HHHHHHhhhccccccCCcccc
Confidence 355888853 3456688889999983 3333333 589999987753
No 106
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=54.03 E-value=36 Score=21.76 Aligned_cols=22 Identities=23% Similarity=0.205 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019194 231 LTIFGTFLIAKRAIHYILQRKR 252 (344)
Q Consensus 231 ~~~~g~~ll~~~~~r~~~~~~~ 252 (344)
.+++|+++++.+++|.|+.|++
T Consensus 17 Vglv~i~iva~~iYRKw~aRkr 38 (43)
T PF08114_consen 17 VGLVGIGIVALFIYRKWQARKR 38 (43)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666677777777755443
No 107
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=53.97 E-value=4.3 Score=39.15 Aligned_cols=30 Identities=30% Similarity=0.605 Sum_probs=0.0
Q ss_pred cceEEecCCCccccccchh------ccCCCccCccc
Q 019194 305 YNAVFVPCGHMCCCIICSW------HLTNCPLCRRR 334 (344)
Q Consensus 305 ~~~~~~pCgH~~~C~~C~~------~~~~CP~CR~~ 334 (344)
.-.+++.|||+.--..--. ...+||+||+.
T Consensus 302 qP~VYl~CGHVhG~h~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 302 QPWVYLNCGHVHGYHNWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp ------------------------------------
T ss_pred CceeeccccceeeecccccccccccccccCCCcccc
Confidence 3578999999874332211 13589999974
No 108
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.44 E-value=4.1 Score=37.52 Aligned_cols=23 Identities=30% Similarity=0.979 Sum_probs=17.0
Q ss_pred CCCccccccchhcc-----------------CCCccCcccc
Q 019194 312 CGHMCCCIICSWHL-----------------TNCPLCRRRI 335 (344)
Q Consensus 312 CgH~~~C~~C~~~~-----------------~~CP~CR~~i 335 (344)
|+-++ |.+|...+ ..||.||..+
T Consensus 325 crp~w-c~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~f 364 (381)
T KOG3899|consen 325 CRPLW-CRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNF 364 (381)
T ss_pred cccHH-HHHHHHHHHhhcccchhHHHHHhcCCCCcchhhce
Confidence 45555 78887765 4899999865
No 109
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=50.99 E-value=23 Score=26.34 Aligned_cols=23 Identities=13% Similarity=0.056 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019194 243 AIHYILQRKRRWELHRRVLAAAA 265 (344)
Q Consensus 243 ~~r~~~~~~~~~~~~~~~~~~~~ 265 (344)
.++.|++.++|++..+.+++..+
T Consensus 26 v~ieYrk~~rqrkId~li~RIre 48 (81)
T PF00558_consen 26 VYIEYRKIKRQRKIDRLIERIRE 48 (81)
T ss_dssp H------------CHHHHHHHHC
T ss_pred HHHHHHHHHHHHhHHHHHHHHHc
Confidence 34555555556655555555443
No 110
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=49.86 E-value=4.4 Score=29.24 Aligned_cols=38 Identities=24% Similarity=0.579 Sum_probs=19.0
Q ss_pred ccceecccccceEEecCCCccccccchhcc---CCCccCcccccce
Q 019194 296 LCVICLEQEYNAVFVPCGHMCCCIICSWHL---TNCPLCRRRIDQV 338 (344)
Q Consensus 296 ~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~---~~CP~CR~~i~~~ 338 (344)
.|+.|...-... . ||. .|..|.... ..||-|.++++.+
T Consensus 3 ~CP~C~~~L~~~---~-~~~-~C~~C~~~~~~~a~CPdC~~~Le~L 43 (70)
T PF07191_consen 3 TCPKCQQELEWQ---G-GHY-HCEACQKDYKKEAFCPDCGQPLEVL 43 (70)
T ss_dssp B-SSS-SBEEEE---T-TEE-EETTT--EEEEEEE-TTT-SB-EEE
T ss_pred cCCCCCCccEEe---C-CEE-ECccccccceecccCCCcccHHHHH
Confidence 688887652111 1 444 488887776 5799998887654
No 111
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=49.84 E-value=5.3 Score=41.76 Aligned_cols=42 Identities=12% Similarity=0.158 Sum_probs=28.7
Q ss_pred cccceecccccc----eEEecCCCccccccchhcc----------CCCccCcccccc
Q 019194 295 DLCVICLEQEYN----AVFVPCGHMCCCIICSWHL----------TNCPLCRRRIDQ 337 (344)
Q Consensus 295 ~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~----------~~CP~CR~~i~~ 337 (344)
..|.+|++.+.+ +.+-.|+|.+ |..|+..+ ..|+.|..-|..
T Consensus 100 ~~C~~E~S~~~ds~~i~P~~~~~~~~-CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~s 155 (1134)
T KOG0825|consen 100 PVCEKEHSPDVDSSNICPVQTHVENQ-CPNCLKSCNDQLEESEKHTAHYFCEECVGS 155 (1134)
T ss_pred chhheecCCcccccCcCchhhhhhhh-hhHHHHHHHHHhhccccccccccHHHHhhh
Confidence 366666666332 3333499999 99998876 478999865544
No 112
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=47.40 E-value=11 Score=22.78 Aligned_cols=15 Identities=27% Similarity=0.649 Sum_probs=11.2
Q ss_pred CCCccCcccccceee
Q 019194 326 TNCPLCRRRIDQVVR 340 (344)
Q Consensus 326 ~~CP~CR~~i~~~~~ 340 (344)
..||+|..+-..+.+
T Consensus 18 ~~CP~Cg~~~~~F~~ 32 (33)
T cd00350 18 WVCPVCGAPKDKFEK 32 (33)
T ss_pred CcCcCCCCcHHHcEE
Confidence 489999987666554
No 113
>PRK01844 hypothetical protein; Provisional
Probab=47.10 E-value=15 Score=26.60 Aligned_cols=34 Identities=15% Similarity=0.146 Sum_probs=19.2
Q ss_pred chhHHHHHHHHHHHHHHhccchhhHhhcccccccch
Q 019194 4 WGGISCCLSGAALYLLGRSSGRDAELLKTVTRVNQL 39 (344)
Q Consensus 4 ~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 39 (344)
++++.++++++..||+.|++-. +.|++-|+.+..
T Consensus 9 l~I~~li~G~~~Gff~ark~~~--k~lk~NPpine~ 42 (72)
T PRK01844 9 VGVVALVAGVALGFFIARKYMM--NYLQKNPPINEQ 42 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHCCCCCHH
Confidence 3443444444445767776542 567777776554
No 114
>cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit. E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a single-strand-specific exonuclease which degrades ssDNA from both 3-prime and 5-prime ends. ExoVII plays a role in methyl-directed mismatch repair in vivo. ExoVII may also guard the genome from mutagenesis by removing excess ssDNA, since the build up of ssDNA would lead to SOS induction and PolIV-dependent mutagenesis.
Probab=45.79 E-value=64 Score=22.95 Aligned_cols=27 Identities=19% Similarity=0.222 Sum_probs=19.2
Q ss_pred eecccCCCceeeEeeeEEecC-CCceEE
Q 019194 169 IERLLPTGTSLTVVGEAVKDD-IGTVRI 195 (344)
Q Consensus 169 ~E~~L~~g~~l~vvGe~~~d~-~G~l~i 195 (344)
....|.+|+.+.+.|.+..+. +|.+.+
T Consensus 42 ~~~~l~~g~~v~v~g~v~~~~~~~~~~l 69 (78)
T cd04489 42 LGFPLEEGMEVLVRGKVSFYEPRGGYQL 69 (78)
T ss_pred CCCCCCCCCEEEEEEEEEEECCCCEEEE
Confidence 336789999999999987653 355443
No 115
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=45.64 E-value=11 Score=24.89 Aligned_cols=35 Identities=31% Similarity=0.708 Sum_probs=20.6
Q ss_pred cceecccccc--eEEecCCCcc----ccccchhcc------CCCccC
Q 019194 297 CVICLEQEYN--AVFVPCGHMC----CCIICSWHL------TNCPLC 331 (344)
Q Consensus 297 C~iC~~~~~~--~~~~pCgH~~----~C~~C~~~~------~~CP~C 331 (344)
|-||++...+ ..+.||+-.. .-..|...| .+|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 6788876443 4667997332 356788877 478887
No 116
>cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1). Both these proteins are 3'-to-5'exoribonucleases. YhaM requires Mn2+ or Co2+ for activity and is inactive in the presence of Mg2+. YhaM also has a Mn2+ dependent 3'-to-5'single-stranded DNA exonuclease activity. SaCBF is also a double-stranded DNA binding protein, binding specifically to cmp, the replication enhancer found in S. aureus plasmid pT181. Proteins in this group combine an N-terminal OB fold with a C-terminal HD domain. The HD domain is found in metal-dependent phosphohydrolases.
Probab=44.87 E-value=69 Score=22.81 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=19.3
Q ss_pred ecccCCCceeeEeeeEEecCCCceEEe
Q 019194 170 ERLLPTGTSLTVVGEAVKDDIGTVRIQ 196 (344)
Q Consensus 170 E~~L~~g~~l~vvGe~~~d~~G~l~i~ 196 (344)
+..|.+|+.+.+.|.+... +|.+.+.
T Consensus 44 ~~~l~~g~~v~v~G~v~~~-~~~~~l~ 69 (83)
T cd04492 44 EEKFKPGDIVHVKGRVEEY-RGRLQLK 69 (83)
T ss_pred HhhCCCCCEEEEEEEEEEe-CCceeEE
Confidence 5678999999999997654 4555554
No 117
>PF14880 COX14: Cytochrome oxidase c assembly
Probab=44.64 E-value=1e+02 Score=21.26 Aligned_cols=30 Identities=23% Similarity=0.370 Sum_probs=18.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019194 224 YKYASFGLTIFGTFLIAKRAIHYILQRKRR 253 (344)
Q Consensus 224 ~~~~~i~~~~~g~~ll~~~~~r~~~~~~~~ 253 (344)
.-+..+++.+.|..++.+..+.+++..+++
T Consensus 17 tV~~Lig~T~~~g~~~~~~~y~~~~~~r~~ 46 (59)
T PF14880_consen 17 TVLGLIGFTVYGGGLTVYTVYSYFKYNRRR 46 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666667677777777777544433
No 118
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=44.48 E-value=14 Score=34.82 Aligned_cols=42 Identities=19% Similarity=0.508 Sum_probs=29.8
Q ss_pred cccccceecccccceEEe---cCCCcc-ccccchhcc----CCCccCccc
Q 019194 293 MPDLCVICLEQEYNAVFV---PCGHMC-CCIICSWHL----TNCPLCRRR 334 (344)
Q Consensus 293 ~~~~C~iC~~~~~~~~~~---pCgH~~-~C~~C~~~~----~~CP~CR~~ 334 (344)
....|++|-+.|.-.++. .=|+++ .|.-|...| .+||.|-..
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 235 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQS 235 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 456999999998755442 233332 389998888 489999863
No 119
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=44.28 E-value=9.8 Score=35.80 Aligned_cols=42 Identities=19% Similarity=0.499 Sum_probs=30.0
Q ss_pred cccccceecccccceEEec----CCCcc-ccccchhcc----CCCccCccc
Q 019194 293 MPDLCVICLEQEYNAVFVP----CGHMC-CCIICSWHL----TNCPLCRRR 334 (344)
Q Consensus 293 ~~~~C~iC~~~~~~~~~~p----CgH~~-~C~~C~~~~----~~CP~CR~~ 334 (344)
....|++|-+.|.-.++.. =|+++ .|.-|...| .+||.|-..
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 3458999999986554432 34322 399999988 489999875
No 120
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=43.48 E-value=12 Score=33.37 Aligned_cols=40 Identities=23% Similarity=0.473 Sum_probs=32.0
Q ss_pred ccceeccc--ccceEEecCCCccccccchhcc------------CCCccCccccc
Q 019194 296 LCVICLEQ--EYNAVFVPCGHMCCCIICSWHL------------TNCPLCRRRID 336 (344)
Q Consensus 296 ~C~iC~~~--~~~~~~~pCgH~~~C~~C~~~~------------~~CP~CR~~i~ 336 (344)
.|..|-.. ..+.+=+.|=|++ -+.|...+ -.||-|.++|-
T Consensus 52 NC~LC~t~La~gdt~RLvCyhlf-HW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 52 NCRLCNTPLASGDTTRLVCYHLF-HWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCceeCCccccCcceeehhhhhH-HHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 68888754 4567778999999 79998865 27999998873
No 121
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=43.43 E-value=12 Score=21.42 Aligned_cols=16 Identities=31% Similarity=0.825 Sum_probs=9.3
Q ss_pred cccchhcc----CCCccCcc
Q 019194 318 CIICSWHL----TNCPLCRR 333 (344)
Q Consensus 318 C~~C~~~~----~~CP~CR~ 333 (344)
|.+|...+ +.||.|--
T Consensus 3 CP~C~~~V~~~~~~Cp~CG~ 22 (26)
T PF10571_consen 3 CPECGAEVPESAKFCPHCGY 22 (26)
T ss_pred CCCCcCCchhhcCcCCCCCC
Confidence 55665554 46776653
No 122
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=41.31 E-value=15 Score=22.50 Aligned_cols=15 Identities=20% Similarity=0.718 Sum_probs=11.4
Q ss_pred CCCccCcccccceee
Q 019194 326 TNCPLCRRRIDQVVR 340 (344)
Q Consensus 326 ~~CP~CR~~i~~~~~ 340 (344)
..||+|..+-..+.+
T Consensus 19 ~~CP~Cg~~~~~F~~ 33 (34)
T cd00729 19 EKCPICGAPKEKFEE 33 (34)
T ss_pred CcCcCCCCchHHcEE
Confidence 589999987666543
No 123
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=40.12 E-value=14 Score=39.08 Aligned_cols=15 Identities=33% Similarity=0.731 Sum_probs=11.9
Q ss_pred cCCCccccccchhcc
Q 019194 311 PCGHMCCCIICSWHL 325 (344)
Q Consensus 311 pCgH~~~C~~C~~~~ 325 (344)
.|||+..|..|...+
T Consensus 440 ~Cg~v~~Cp~Cd~~l 454 (730)
T COG1198 440 DCGYIAECPNCDSPL 454 (730)
T ss_pred cCCCcccCCCCCcce
Confidence 788888888887765
No 124
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.73 E-value=37 Score=36.32 Aligned_cols=31 Identities=26% Similarity=0.382 Sum_probs=21.3
Q ss_pred cccccceecccc--cceEEecCCCccccccchhc
Q 019194 293 MPDLCVICLEQE--YNAVFVPCGHMCCCIICSWH 324 (344)
Q Consensus 293 ~~~~C~iC~~~~--~~~~~~pCgH~~~C~~C~~~ 324 (344)
....|-+|.-.- +..++.||||.| -++|...
T Consensus 816 p~d~C~~C~~~ll~~pF~vf~CgH~F-H~~Cl~~ 848 (911)
T KOG2034|consen 816 PQDSCDHCGRPLLIKPFYVFPCGHCF-HRDCLIR 848 (911)
T ss_pred CccchHHhcchhhcCcceeeeccchH-HHHHHHH
Confidence 345799997542 234445999999 7899654
No 125
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=39.73 E-value=17 Score=34.28 Aligned_cols=43 Identities=35% Similarity=0.873 Sum_probs=31.8
Q ss_pred ccccceecccc----cceEEecCCCccccccchhcc----CCCccCcccccc
Q 019194 294 PDLCVICLEQE----YNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 337 (344)
Q Consensus 294 ~~~C~iC~~~~----~~~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~ 337 (344)
+..|++|.+.. .+.+=.||||.. |..|.... ..||.||.+...
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~~-~l~~~~t~~~~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFRL-CLFCHKTISDGDGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCCcccccccccccccccccc-hhhhhhcccccCCCCCccCCcccc
Confidence 46899999743 233334888984 99998877 589999977654
No 126
>PRK00523 hypothetical protein; Provisional
Probab=39.60 E-value=24 Score=25.63 Aligned_cols=33 Identities=9% Similarity=0.131 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHHHHhccchhhHhhcccccccch
Q 019194 5 GGISCCLSGAALYLLGRSSGRDAELLKTVTRVNQL 39 (344)
Q Consensus 5 g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 39 (344)
+++.++++++..||+.|++-. +.|++-|+.+..
T Consensus 11 ~i~~li~G~~~Gffiark~~~--k~l~~NPpine~ 43 (72)
T PRK00523 11 GIPLLIVGGIIGYFVSKKMFK--KQIRENPPITEN 43 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHCcCCCHH
Confidence 443334444444767776542 557777766554
No 127
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=39.10 E-value=14 Score=23.56 Aligned_cols=14 Identities=29% Similarity=0.361 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHhc
Q 019194 9 CCLSGAALYLLGRS 22 (344)
Q Consensus 9 ~~~~~~~~~~~~~~ 22 (344)
.++.++++|+.||+
T Consensus 25 ~~vl~~~l~~~~rR 38 (40)
T PF08693_consen 25 IIVLGAFLFFWYRR 38 (40)
T ss_pred HHHHHHHhheEEec
Confidence 34444444434444
No 128
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=38.20 E-value=6.3 Score=22.57 Aligned_cols=9 Identities=44% Similarity=1.409 Sum_probs=7.2
Q ss_pred CCccCcccc
Q 019194 327 NCPLCRRRI 335 (344)
Q Consensus 327 ~CP~CR~~i 335 (344)
.||+|.+.+
T Consensus 3 ~CPiC~~~v 11 (26)
T smart00734 3 QCPVCFREV 11 (26)
T ss_pred cCCCCcCcc
Confidence 689998776
No 129
>PF00672 HAMP: HAMP domain; InterPro: IPR003660 The HAMP linker domain (present in Histidine kinases, Adenyl cyclases, Methyl-accepting proteins and Phosphatases) is an approximately 50-amino acid alpha-helical region. It is found in bacterial sensor and chemotaxis proteins and in eukaryotic histidine kinases. The bacterial proteins are usually integral membrane proteins and part of a two-component signal transduction pathway. One or several copies of the HAMP domain can be found in association with other domains, such as the histidine kinase domain, the bacterial chemotaxis sensory transducer domain, the PAS repeat, the EAL domain, the GGDEF domain, the protein phosphatase 2C-like domain, the guanylate cyclase domain, or the response regulatory domain. It has been suggested that the HAMP domain possesses a role of regulating the phosphorylation or methylation of homodimeric receptors by transmitting the conformational changes in periplasmic ligand-binding domains to cytoplasmic signalling kinase and methyl-acceptor domains.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016021 integral to membrane; PDB: 3PJX_A 3PJW_A 3ZX6_B 2Y20_B 2Y0Q_D 2Y21_H 3ZRW_C 2L7H_B 2LFS_B 2L7I_B ....
Probab=37.44 E-value=20 Score=24.95 Aligned_cols=32 Identities=25% Similarity=0.080 Sum_probs=18.2
Q ss_pred ccchhHHHHHHHHHHHHHHhccchhhHhhccc
Q 019194 2 IPWGGISCCLSGAALYLLGRSSGRDAELLKTV 33 (344)
Q Consensus 2 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 33 (344)
+++++++++++.++.|++.++..+-++.|.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~i~~pl~~l~~~ 33 (70)
T PF00672_consen 2 LVLFLIILLLSLLLAWLLARRITRPLRRLSDA 33 (70)
T ss_dssp HHHHHHHHHHHHHHHHH--HTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666676777766666666443
No 130
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.07 E-value=14 Score=35.59 Aligned_cols=40 Identities=25% Similarity=0.473 Sum_probs=29.2
Q ss_pred cccceeccccc---ceEEecCCCccccccchhcc-------CCCccCcccc
Q 019194 295 DLCVICLEQEY---NAVFVPCGHMCCCIICSWHL-------TNCPLCRRRI 335 (344)
Q Consensus 295 ~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~~-------~~CP~CR~~i 335 (344)
..|+|=.+.-. -++-+.|||+. |.+=..++ =+||-|-...
T Consensus 335 F~CPVlKeqtsdeNPPm~L~CGHVI-SkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLICGHVI-SKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred eecccchhhccCCCCCeeeecccee-cHHHHHHHhhCCCeeeeCCCCCccc
Confidence 47888665433 26778999998 88877777 1799998654
No 131
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=36.64 E-value=38 Score=24.02 Aligned_cols=30 Identities=13% Similarity=0.185 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHhccchhhHhhcccccccch
Q 019194 8 SCCLSGAALYLLGRSSGRDAELLKTVTRVNQL 39 (344)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 39 (344)
.+++++++.||+.|++-. +.|++-|+.+..
T Consensus 6 ali~G~~~Gff~ar~~~~--k~l~~NPpine~ 35 (64)
T PF03672_consen 6 ALIVGAVIGFFIARKYME--KQLKENPPINEK 35 (64)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHCCCCCHH
Confidence 344444555767776543 456666665443
No 132
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.45 E-value=11 Score=36.79 Aligned_cols=30 Identities=27% Similarity=0.608 Sum_probs=21.0
Q ss_pred ccccceeccc-ccc---eEEecCCCccccccchhc
Q 019194 294 PDLCVICLEQ-EYN---AVFVPCGHMCCCIICSWH 324 (344)
Q Consensus 294 ~~~C~iC~~~-~~~---~~~~pCgH~~~C~~C~~~ 324 (344)
...|.||+.. +.. ....-|+|.| |.+|...
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~f-C~~C~k~ 179 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRF-CKDCVKQ 179 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchh-hhHHhHH
Confidence 4589999932 221 2245899999 9999774
No 133
>PF12669 P12: Virus attachment protein p12 family
Probab=35.95 E-value=31 Score=23.88 Aligned_cols=12 Identities=25% Similarity=0.036 Sum_probs=5.2
Q ss_pred ccchhHHHHHHH
Q 019194 2 IPWGGISCCLSG 13 (344)
Q Consensus 2 ~~~g~~~~~~~~ 13 (344)
||+|++++++++
T Consensus 2 iII~~Ii~~~~~ 13 (58)
T PF12669_consen 2 IIIGIIILAAVA 13 (58)
T ss_pred eeHHHHHHHHHH
Confidence 355553333333
No 134
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=35.27 E-value=12 Score=27.47 Aligned_cols=44 Identities=30% Similarity=0.609 Sum_probs=16.1
Q ss_pred cccccceecccccc----eEEe---cCCCccccccchhc-----cCCCccCcccccc
Q 019194 293 MPDLCVICLEQEYN----AVFV---PCGHMCCCIICSWH-----LTNCPLCRRRIDQ 337 (344)
Q Consensus 293 ~~~~C~iC~~~~~~----~~~~---pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 337 (344)
+...|.||-+..-- -+|+ .|+--+ |..|..- .+.||.|+.+..+
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPv-Cr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPV-CRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS------HHHHHHHHHTS-SB-TTT--B---
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCcc-chhHHHHHhhcCcccccccCCCccc
Confidence 34589999875422 2333 444444 7788652 2799999987654
No 135
>PRK11677 hypothetical protein; Provisional
Probab=34.70 E-value=27 Score=28.69 Aligned_cols=24 Identities=13% Similarity=-0.069 Sum_probs=16.3
Q ss_pred ccchhHHHHHHHHHHHHHHhccch
Q 019194 2 IPWGGISCCLSGAALYLLGRSSGR 25 (344)
Q Consensus 2 ~~~g~~~~~~~~~~~~~~~~~~~~ 25 (344)
|+++++.+++++++.|++.|...+
T Consensus 3 W~~a~i~livG~iiG~~~~R~~~~ 26 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRFGNR 26 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Confidence 456666677777777888875443
No 136
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.26 E-value=17 Score=26.78 Aligned_cols=8 Identities=50% Similarity=1.277 Sum_probs=6.1
Q ss_pred CCCccCcc
Q 019194 326 TNCPLCRR 333 (344)
Q Consensus 326 ~~CP~CR~ 333 (344)
.-||.||.
T Consensus 22 D~CPrCrG 29 (88)
T COG3809 22 DYCPRCRG 29 (88)
T ss_pred eeCCcccc
Confidence 47999984
No 137
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=33.38 E-value=15 Score=24.78 Aligned_cols=10 Identities=60% Similarity=1.434 Sum_probs=3.5
Q ss_pred CCccCccccc
Q 019194 327 NCPLCRRRID 336 (344)
Q Consensus 327 ~CP~CR~~i~ 336 (344)
.||+|.+++.
T Consensus 22 ~CPlC~r~l~ 31 (54)
T PF04423_consen 22 CCPLCGRPLD 31 (54)
T ss_dssp E-TTT--EE-
T ss_pred cCCCCCCCCC
Confidence 4666665543
No 138
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=31.75 E-value=2.2e+02 Score=30.18 Aligned_cols=13 Identities=31% Similarity=0.647 Sum_probs=10.2
Q ss_pred CCCccCcccccce
Q 019194 326 TNCPLCRRRIDQV 338 (344)
Q Consensus 326 ~~CP~CR~~i~~~ 338 (344)
..||+|...+...
T Consensus 1175 ~~CPLCHs~~~~~ 1187 (1189)
T KOG2041|consen 1175 NCCPLCHSMESFR 1187 (1189)
T ss_pred ccCccccChhhcc
Confidence 6899999877543
No 139
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=31.31 E-value=1.2e+02 Score=25.09 Aligned_cols=25 Identities=20% Similarity=0.157 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019194 237 FLIAKRAIHYILQRKRRWELHRRVL 261 (344)
Q Consensus 237 ~ll~~~~~r~~~~~~~~~~~~~~~~ 261 (344)
+++.+..+|++++.+-+++..+++.
T Consensus 35 ~~~~~~~~r~~~~~~yrr~Al~~L~ 59 (146)
T PF14316_consen 35 ILLLWRLWRRWRRNRYRREALRELA 59 (146)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHH
Confidence 3444445555554444444333333
No 140
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=31.07 E-value=81 Score=31.55 Aligned_cols=29 Identities=24% Similarity=0.511 Sum_probs=19.0
Q ss_pred cccceecccc----cceEEecCCCccccccchhc
Q 019194 295 DLCVICLEQE----YNAVFVPCGHMCCCIICSWH 324 (344)
Q Consensus 295 ~~C~iC~~~~----~~~~~~pCgH~~~C~~C~~~ 324 (344)
..|..|.... +.-..-.||-+| |..|...
T Consensus 902 ~~cmacq~pf~afrrrhhcrncggif-cg~cs~a 934 (990)
T KOG1819|consen 902 EQCMACQMPFNAFRRRHHCRNCGGIF-CGKCSCA 934 (990)
T ss_pred hhhhhccCcHHHHHHhhhhcccCcee-ecccccC
Confidence 3688886542 222345899998 8888654
No 141
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=30.71 E-value=30 Score=23.09 Aligned_cols=38 Identities=24% Similarity=0.543 Sum_probs=16.4
Q ss_pred ccceecccccceE-EecCCCccccccchhcc--------CCCccCccc
Q 019194 296 LCVICLEQEYNAV-FVPCGHMCCCIICSWHL--------TNCPLCRRR 334 (344)
Q Consensus 296 ~C~iC~~~~~~~~-~~pCgH~~~C~~C~~~~--------~~CP~CR~~ 334 (344)
.|++.+..-...+ -..|.|.. |++=..-+ =.||+|.++
T Consensus 4 ~CPls~~~i~~P~Rg~~C~H~~-CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 4 RCPLSFQRIRIPVRGKNCKHLQ-CFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp B-TTTSSB-SSEEEETT--SS---EEHHHHHHHHHHS---B-TTT---
T ss_pred eCCCCCCEEEeCccCCcCcccc-eECHHHHHHHhhccCCeECcCCcCc
Confidence 5777776665543 45899986 54432222 169999874
No 142
>PLN02400 cellulose synthase
Probab=30.25 E-value=47 Score=36.55 Aligned_cols=44 Identities=30% Similarity=0.612 Sum_probs=29.2
Q ss_pred cccccceecccccc----eEEe---cCCCccccccchhcc-----CCCccCcccccc
Q 019194 293 MPDLCVICLEQEYN----AVFV---PCGHMCCCIICSWHL-----TNCPLCRRRIDQ 337 (344)
Q Consensus 293 ~~~~C~iC~~~~~~----~~~~---pCgH~~~C~~C~~~~-----~~CP~CR~~i~~ 337 (344)
....|.||-|..-- =.|+ .|+--+ |..|+.-- +.||.|++...+
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPV-CRpCYEYERkeGnq~CPQCkTrYkR 90 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPV-CRPCYEYERKDGTQCCPQCKTRYRR 90 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCcc-ccchhheecccCCccCcccCCcccc
Confidence 34599999986321 1344 444444 99997522 799999988764
No 143
>cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE). The DNA polymerase holoenzyme of E. coli contains two copies of this replicative polymerase, each of which copies a different DNA strand. This group also contains Bacillus subtilis DnaE. Replication in B. subtilis and Staphylococcus aureus requires two different type C polymerases, polC and DnaE, both of which are thought to be included in the DNA polymerase holoenzyme. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.
Probab=29.94 E-value=73 Score=22.45 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=18.0
Q ss_pred ecccCCCceeeEeeeEEecCCCceEE
Q 019194 170 ERLLPTGTSLTVVGEAVKDDIGTVRI 195 (344)
Q Consensus 170 E~~L~~g~~l~vvGe~~~d~~G~l~i 195 (344)
+..|.+|+.+.+.|.+... +|.+.+
T Consensus 45 ~~~l~~g~~v~v~G~v~~~-~~~~~l 69 (84)
T cd04485 45 RDLLKEDALLLVEGKVERR-DGGLRL 69 (84)
T ss_pred HHHhcCCCEEEEEEEEEec-CCceEE
Confidence 4668899999999997654 354443
No 144
>PRK00523 hypothetical protein; Provisional
Probab=29.47 E-value=1.8e+02 Score=21.09 Aligned_cols=26 Identities=12% Similarity=-0.100 Sum_probs=16.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019194 223 WYKYASFGLTIFGTFLIAKRAIHYIL 248 (344)
Q Consensus 223 ~~~~~~i~~~~~g~~ll~~~~~r~~~ 248 (344)
.|..+.++.+++|++.-.+.++++++
T Consensus 6 l~I~l~i~~li~G~~~Gffiark~~~ 31 (72)
T PRK00523 6 LALGLGIPLLIVGGIIGYFVSKKMFK 31 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666777777777777774
No 145
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=29.44 E-value=23 Score=30.21 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=16.1
Q ss_pred CCCccccccchhccCCCccCccccccee
Q 019194 312 CGHMCCCIICSWHLTNCPLCRRRIDQVV 339 (344)
Q Consensus 312 CgH~~~C~~C~~~~~~CP~CR~~i~~~~ 339 (344)
|||++ .. ..-..||+|..+-..+.
T Consensus 140 CGy~~--~g--e~P~~CPiCga~k~~F~ 163 (166)
T COG1592 140 CGYTH--EG--EAPEVCPICGAPKEKFE 163 (166)
T ss_pred CCCcc--cC--CCCCcCCCCCChHHHhh
Confidence 48875 33 33368999998766553
No 146
>cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1). Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The OB fold domain of RPA2 has dual roles in ssDNA binding and trimerization.
Probab=28.92 E-value=80 Score=23.95 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=14.5
Q ss_pred ecccCCCceeeEeeeEEe
Q 019194 170 ERLLPTGTSLTVVGEAVK 187 (344)
Q Consensus 170 E~~L~~g~~l~vvGe~~~ 187 (344)
..-|.+|.-+-|.|.+..
T Consensus 60 ~~~i~~G~vvrV~G~i~~ 77 (92)
T cd04483 60 AKVLEIGDLLRVRGSIRT 77 (92)
T ss_pred ccccCCCCEEEEEEEEec
Confidence 345999999999998754
No 147
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=28.86 E-value=26 Score=23.67 Aligned_cols=21 Identities=38% Similarity=0.996 Sum_probs=13.1
Q ss_pred cCCCccccccchhcc----CCCccCc
Q 019194 311 PCGHMCCCIICSWHL----TNCPLCR 332 (344)
Q Consensus 311 pCgH~~~C~~C~~~~----~~CP~CR 332 (344)
.|++.| |.+|..-+ -.||-|-
T Consensus 26 ~C~~~F-C~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 26 KCKNHF-CIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp TTT--B--HHHHHTTTTTS-SSSTT-
T ss_pred CCCCcc-ccCcChhhhccccCCcCCC
Confidence 688888 99997754 6899984
No 148
>PHA02862 5L protein; Provisional
Probab=28.64 E-value=28 Score=28.91 Aligned_cols=42 Identities=24% Similarity=0.518 Sum_probs=26.1
Q ss_pred cccceecccccceEE-ecCC--Cccccccchhcc------CCCccCccccc
Q 019194 295 DLCVICLEQEYNAVF-VPCG--HMCCCIICSWHL------TNCPLCRRRID 336 (344)
Q Consensus 295 ~~C~iC~~~~~~~~~-~pCg--H~~~C~~C~~~~------~~CP~CR~~i~ 336 (344)
+.|-||++...+-.- -.|. --+...+|...| ..||+|+.+..
T Consensus 3 diCWIC~~~~~e~~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 3 DICWICNDVCDERNNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CEEEEecCcCCCCcccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 479999988654421 0000 012346788877 58999998864
No 149
>PLN02436 cellulose synthase A
Probab=28.63 E-value=48 Score=36.44 Aligned_cols=44 Identities=27% Similarity=0.576 Sum_probs=29.9
Q ss_pred cccccceecccccc----eEEecCC---Cccccccchhcc-----CCCccCcccccc
Q 019194 293 MPDLCVICLEQEYN----AVFVPCG---HMCCCIICSWHL-----TNCPLCRRRIDQ 337 (344)
Q Consensus 293 ~~~~C~iC~~~~~~----~~~~pCg---H~~~C~~C~~~~-----~~CP~CR~~i~~ 337 (344)
....|.||-|..-. =.|+.|. -- .|..|..-- +.||.|++...+
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fp-vCr~Cyeyer~eg~~~Cpqckt~Y~r 90 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFP-VCRPCYEYERREGNQACPQCKTRYKR 90 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCc-cccchhhhhhhcCCccCcccCCchhh
Confidence 34599999987421 2455554 33 499998533 789999988764
No 150
>PF15102 TMEM154: TMEM154 protein family
Probab=28.54 E-value=19 Score=29.96 Aligned_cols=16 Identities=19% Similarity=0.081 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHhccc
Q 019194 9 CCLSGAALYLLGRSSG 24 (344)
Q Consensus 9 ~~~~~~~~~~~~~~~~ 24 (344)
+++.++++.+++|+++
T Consensus 71 LLl~vV~lv~~~kRkr 86 (146)
T PF15102_consen 71 LLLSVVCLVIYYKRKR 86 (146)
T ss_pred HHHHHHHheeEEeecc
Confidence 3445555553444433
No 151
>PF10886 DUF2685: Protein of unknown function (DUF2685); InterPro: IPR024362 This is a family of uncharacterised bacteriophage proteins. Their function in unknown.
Probab=28.36 E-value=25 Score=23.97 Aligned_cols=13 Identities=31% Similarity=0.848 Sum_probs=10.7
Q ss_pred CCCccCcccccce
Q 019194 326 TNCPLCRRRIDQV 338 (344)
Q Consensus 326 ~~CP~CR~~i~~~ 338 (344)
..|.+|+++|...
T Consensus 2 ~~CvVCKqpi~~a 14 (54)
T PF10886_consen 2 EICVVCKQPIDDA 14 (54)
T ss_pred CeeeeeCCccCcc
Confidence 4799999999764
No 152
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=28.14 E-value=28 Score=21.60 Aligned_cols=13 Identities=23% Similarity=0.838 Sum_probs=9.7
Q ss_pred CCCccCcccccce
Q 019194 326 TNCPLCRRRIDQV 338 (344)
Q Consensus 326 ~~CP~CR~~i~~~ 338 (344)
..||.|...+.++
T Consensus 27 ~~CP~Cg~~~~r~ 39 (41)
T smart00834 27 ATCPECGGDVRRL 39 (41)
T ss_pred CCCCCCCCcceec
Confidence 5799999865543
No 153
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=27.55 E-value=88 Score=32.97 Aligned_cols=31 Identities=16% Similarity=0.340 Sum_probs=23.0
Q ss_pred eeecccCCCceeeEeeeEEecCCCceEEeCCC
Q 019194 168 RIERLLPTGTSLTVVGEAVKDDIGTVRIQRPH 199 (344)
Q Consensus 168 ~~E~~L~~g~~l~vvGe~~~d~~G~l~i~~P~ 199 (344)
|....|++|+.+++.|.+... .|.+.|.+|.
T Consensus 103 ~~~~~l~~G~~~~v~Gkv~~~-~~~~qm~~P~ 133 (681)
T PRK10917 103 YLKKQLKVGKRVAVYGKVKRG-KYGLEMVHPE 133 (681)
T ss_pred HHHhhCCCCCEEEEEEEEEec-CCeEEEEcCE
Confidence 556779999999999997653 4556666553
No 154
>PF10882 bPH_5: Bacterial PH domain; InterPro: IPR020482 This entry contains membrane proteins with no known function.
Probab=27.42 E-value=1.3e+02 Score=22.61 Aligned_cols=29 Identities=28% Similarity=0.466 Sum_probs=22.6
Q ss_pred CCceEEeCCCCCCeeeecCCHHHHHHHhhh
Q 019194 190 IGTVRIQRPHKGPFYVSPKTIDELIENLGK 219 (344)
Q Consensus 190 ~G~l~i~~P~~~~f~lS~~~~~~L~~~l~~ 219 (344)
+.-+.|.... +.|++|+.++++++..++.
T Consensus 70 ~~~i~I~t~~-~~y~isp~~~~~fi~~l~~ 98 (100)
T PF10882_consen 70 KNVILIKTKD-KTYVISPEDPEEFIEALKK 98 (100)
T ss_pred CCEEEEEECC-ceEEEcCCCHHHHHHHHHh
Confidence 3456676555 7899999999999988764
No 155
>PF12120 Arr-ms: Rifampin ADP-ribosyl transferase; InterPro: IPR021975 This domain is part of the beta subunit of bacterial DNA dependent RNA polymerase. This domain is the binding site for the antibacterial drug rifampin (and its analogues) which blocks the DNA/RNA tunnel and prevents initiation of transcription. ; PDB: 2HW2_A.
Probab=27.25 E-value=50 Score=25.31 Aligned_cols=46 Identities=30% Similarity=0.425 Sum_probs=22.5
Q ss_pred CCceeEEEecCCCCccceeeeeeeeeecCcccccccccccccceEEeeeeeeecccCCCceeeEeeeE
Q 019194 118 DGTGRAFVVGARGATGFVLTVGSEVFEESGRSLVRGTLDYLQGLKMLGVKRIERLLPTGTSLTVVGEA 185 (344)
Q Consensus 118 D~tg~v~V~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~r~~E~~L~~g~~l~vvGe~ 185 (344)
|+.|+|.|+.|.+....+-++...+|+ |--+..||..| ++-|+||+
T Consensus 52 ~g~~RiYiVEPtG~~EdDPNvTdkkfP---------------GNPTrSyRs~~-------PlrvvgEv 97 (100)
T PF12120_consen 52 EGRGRIYIVEPTGPFEDDPNVTDKKFP---------------GNPTRSYRSRE-------PLRVVGEV 97 (100)
T ss_dssp SS--EEEEEEESS--EE-GGGSSSSSS---------------S-TT-EEEESS--------EEEEEEE
T ss_pred CCCCcEEEEccCCCcccCccccCCCCC---------------CCCcceeecCC-------CeEEEEEe
Confidence 567788888887775543333333333 22234566654 57788875
No 156
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=27.23 E-value=60 Score=22.94 Aligned_cols=32 Identities=16% Similarity=0.010 Sum_probs=19.8
Q ss_pred CccchhHHHHHHHHHHHHHHhccchhhHhhcc
Q 019194 1 MIPWGGISCCLSGAALYLLGRSSGRDAELLKT 32 (344)
Q Consensus 1 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~ 32 (344)
||++-.++++++-+++...-+..++++++++-
T Consensus 1 MWIiiSIvLai~lLI~l~~ns~lr~eiealkY 32 (66)
T PF07438_consen 1 MWIIISIVLAIALLISLSVNSELRKEIEALKY 32 (66)
T ss_pred ChhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 77766656666666655455566666666643
No 157
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=27.16 E-value=1.7e+02 Score=23.47 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019194 239 IAKRAIHYILQRKRRWELHRRVLAAA 264 (344)
Q Consensus 239 l~~~~~r~~~~~~~~~~~~~~~~~~~ 264 (344)
++.+.+..|+.++++.+.++.++...
T Consensus 81 ~~~we~Cr~~r~~~~~~~~~~~e~~~ 106 (118)
T PF12597_consen 81 LGSWEYCRYNRRKERQQMKRAVEAMQ 106 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555454444444444333
No 158
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=27.15 E-value=16 Score=40.56 Aligned_cols=43 Identities=30% Similarity=0.651 Sum_probs=32.7
Q ss_pred cccccceecccccc-eEEecCCCccccccchhcc----CCCccCccccc
Q 019194 293 MPDLCVICLEQEYN-AVFVPCGHMCCCIICSWHL----TNCPLCRRRID 336 (344)
Q Consensus 293 ~~~~C~iC~~~~~~-~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~ 336 (344)
....|.+|.+--++ ..+.-|||-. |..|...| ..||+|...+.
T Consensus 1152 ~~~~c~ic~dil~~~~~I~~cgh~~-c~~c~~~~l~~~s~~~~~ksi~~ 1199 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIAGCGHEP-CCRCDELWLYASSRCPICKSIKG 1199 (1394)
T ss_pred cccchHHHHHHHHhcCCeeeechhH-hhhHHHHHHHHhccCcchhhhhh
Confidence 34589999998763 4445899999 66998888 58999985443
No 159
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=26.71 E-value=22 Score=32.00 Aligned_cols=20 Identities=30% Similarity=0.908 Sum_probs=16.3
Q ss_pred ccccchhcc----CCCccCccccc
Q 019194 317 CCIICSWHL----TNCPLCRRRID 336 (344)
Q Consensus 317 ~C~~C~~~~----~~CP~CR~~i~ 336 (344)
.|..|-..+ +.||+|.++-.
T Consensus 196 ~C~sC~qqIHRNAPiCPlCK~KsR 219 (230)
T PF10146_consen 196 TCQSCHQQIHRNAPICPLCKAKSR 219 (230)
T ss_pred hhHhHHHHHhcCCCCCcccccccc
Confidence 588998877 79999998643
No 160
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=26.45 E-value=49 Score=27.42 Aligned_cols=32 Identities=16% Similarity=0.107 Sum_probs=16.1
Q ss_pred ccchhHHHHHHHHHH-HHHHhccchhhHhhccc
Q 019194 2 IPWGGISCCLSGAAL-YLLGRSSGRDAELLKTV 33 (344)
Q Consensus 2 ~~~g~~~~~~~~~~~-~~~~~~~~~~~~~l~~~ 33 (344)
|++|++++++.-+++ |++.+++++...++++.
T Consensus 34 ILiaIvVliiiiivli~lcssRKkKaaAAi~ee 66 (189)
T PF05568_consen 34 ILIAIVVLIIIIIVLIYLCSSRKKKAAAAIEEE 66 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhhh
Confidence 455664444433333 44555555556666443
No 161
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=26.26 E-value=27 Score=22.66 Aligned_cols=21 Identities=33% Similarity=0.798 Sum_probs=13.6
Q ss_pred cccccchhcc--------CCCccCccccc
Q 019194 316 CCCIICSWHL--------TNCPLCRRRID 336 (344)
Q Consensus 316 ~~C~~C~~~~--------~~CP~CR~~i~ 336 (344)
+.|..|-..+ ..||.|..++.
T Consensus 4 y~C~~CG~~~~~~~~~~~~~Cp~CG~~~~ 32 (46)
T PRK00398 4 YKCARCGREVELDEYGTGVRCPYCGYRIL 32 (46)
T ss_pred EECCCCCCEEEECCCCCceECCCCCCeEE
Confidence 4466664443 47999987764
No 162
>PHA02610 uvsY.-2 hypothetical protein; Provisional
Probab=26.05 E-value=28 Score=23.45 Aligned_cols=14 Identities=21% Similarity=0.802 Sum_probs=10.7
Q ss_pred CCCccCccccccee
Q 019194 326 TNCPLCRRRIDQVV 339 (344)
Q Consensus 326 ~~CP~CR~~i~~~~ 339 (344)
..|++|++||....
T Consensus 2 ~iCvvCK~Pi~~al 15 (53)
T PHA02610 2 KICVVCKQPIEKAL 15 (53)
T ss_pred ceeeeeCCchhhce
Confidence 46999999987643
No 163
>cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit. PolII is a family D DNA polymerase, having a 3-prime to 5-prime exonuclease activity. P. abyssi PolII is heterodimeric. The large subunit appears to be the polymerase, and the small subunit may be the exonuclease. The small subunit contains a calcineurin-like phosphatase superfamily domain C-terminal to this OB-fold domain.
Probab=25.99 E-value=1.7e+02 Score=21.42 Aligned_cols=19 Identities=16% Similarity=0.111 Sum_probs=14.7
Q ss_pred eecccCCCceeeEeeeEEe
Q 019194 169 IERLLPTGTSLTVVGEAVK 187 (344)
Q Consensus 169 ~E~~L~~g~~l~vvGe~~~ 187 (344)
.+..|.+|+.+.+.|.+..
T Consensus 44 ~~~~l~~d~~v~v~g~v~~ 62 (79)
T cd04490 44 EAEDILPDEVIGVSGTVSK 62 (79)
T ss_pred hhhhccCCCEEEEEEEEec
Confidence 3467888999999998743
No 164
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=25.46 E-value=2.9e+02 Score=22.75 Aligned_cols=31 Identities=23% Similarity=0.133 Sum_probs=14.0
Q ss_pred eecCCHHHHHHHhhhhhHHHHHHHhHHHHHH
Q 019194 205 VSPKTIDELIENLGKWARWYKYASFGLTIFG 235 (344)
Q Consensus 205 lS~~~~~~L~~~l~~~a~~~~~~~i~~~~~g 235 (344)
.+.....++..........+...+++.+.+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~G~~i~~~v~ 131 (154)
T PF09835_consen 101 WSLMHWSDLLESLWEFGLPFLLGSLILGIVL 131 (154)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555444444444444444444433
No 165
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=25.38 E-value=57 Score=23.29 Aligned_cols=20 Identities=20% Similarity=0.182 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHhccch
Q 019194 6 GISCCLSGAALYLLGRSSGR 25 (344)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~ 25 (344)
++..++.|+++|-+|.+++.
T Consensus 9 ~ICVaii~lIlY~iYnr~~~ 28 (68)
T PF05961_consen 9 IICVAIIGLILYGIYNRKKT 28 (68)
T ss_pred HHHHHHHHHHHHHHHhcccc
Confidence 33667777777877776554
No 166
>PF10176 DUF2370: Protein of unknown function (DUF2370); InterPro: IPR019325 Proteins in this family are conserved from fungi to humans. They include the human NEDD4 family-interacting proteins and the yeast BSD2 metal homeostatis proteins.
Probab=25.13 E-value=1.3e+02 Score=27.25 Aligned_cols=31 Identities=19% Similarity=0.390 Sum_probs=23.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019194 224 YKYASFGLTIFGTFLIAKRAIHYILQRKRRW 254 (344)
Q Consensus 224 ~~~~~i~~~~~g~~ll~~~~~r~~~~~~~~~ 254 (344)
..|++.+++++|.+++.+-++.||+-+|.++
T Consensus 193 ~~wla~~Lm~~G~fI~irsi~dY~rVKR~Er 223 (233)
T PF10176_consen 193 NPWLAYILMAFGWFIFIRSIIDYWRVKRMER 223 (233)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888999999888888987655444
No 167
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.11 E-value=37 Score=34.38 Aligned_cols=20 Identities=10% Similarity=0.157 Sum_probs=11.8
Q ss_pred hhcccccccchhHHHHHhhc
Q 019194 29 LLKTVTRVNQLKELAHLLDS 48 (344)
Q Consensus 29 ~l~~~~~~~~~~~L~~~l~~ 48 (344)
.|-=+|+.....++.+.++.
T Consensus 28 vLvlvP~i~L~~Q~~~~l~~ 47 (505)
T TIGR00595 28 VLVLVPEIALTPQMIQRFKY 47 (505)
T ss_pred EEEEeCcHHHHHHHHHHHHH
Confidence 45555776666666665554
No 168
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.84 E-value=21 Score=35.47 Aligned_cols=31 Identities=29% Similarity=0.504 Sum_probs=25.9
Q ss_pred ccccceecccccc-eEEecCCCccccccchhcc
Q 019194 294 PDLCVICLEQEYN-AVFVPCGHMCCCIICSWHL 325 (344)
Q Consensus 294 ~~~C~iC~~~~~~-~~~~pCgH~~~C~~C~~~~ 325 (344)
...|-||.+.... ++.++|||.+ |..|....
T Consensus 70 ~~~c~ic~~~~~~~~~~~~c~H~~-c~~cw~~y 101 (444)
T KOG1815|consen 70 DVQCGICVESYDGEIIGLGCGHPF-CPPCWTGY 101 (444)
T ss_pred cccCCcccCCCcchhhhcCCCcHH-HHHHHHHH
Confidence 3589999998885 8888999999 99997763
No 169
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=24.72 E-value=3.1e+02 Score=20.72 Aligned_cols=28 Identities=11% Similarity=0.011 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019194 234 FGTFLIAKRAIHYILQRKRRWELHRRVL 261 (344)
Q Consensus 234 ~g~~ll~~~~~r~~~~~~~~~~~~~~~~ 261 (344)
++.++++..++-+|+-++-+++..+...
T Consensus 10 ~~~v~~~i~~y~~~k~~ka~~~~~kL~~ 37 (87)
T PF10883_consen 10 VGAVVALILAYLWWKVKKAKKQNAKLQK 37 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444544444444433333
No 170
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=24.65 E-value=31 Score=19.07 Aligned_cols=18 Identities=28% Similarity=0.794 Sum_probs=9.9
Q ss_pred cccchhcc----CCCccCcccc
Q 019194 318 CIICSWHL----TNCPLCRRRI 335 (344)
Q Consensus 318 C~~C~~~~----~~CP~CR~~i 335 (344)
|..|-..+ +-||.|..++
T Consensus 2 Cp~CG~~~~~~~~fC~~CG~~l 23 (23)
T PF13240_consen 2 CPNCGAEIEDDAKFCPNCGTPL 23 (23)
T ss_pred CcccCCCCCCcCcchhhhCCcC
Confidence 44554444 4677776543
No 171
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=24.60 E-value=32 Score=23.06 Aligned_cols=14 Identities=29% Similarity=0.676 Sum_probs=9.3
Q ss_pred CCccCcccccceee
Q 019194 327 NCPLCRRRIDQVVR 340 (344)
Q Consensus 327 ~CP~CR~~i~~~~~ 340 (344)
.||+|..+-..+..
T Consensus 36 ~CP~C~a~K~~F~~ 49 (50)
T cd00730 36 VCPVCGAGKDDFEP 49 (50)
T ss_pred CCCCCCCcHHHcEe
Confidence 67888776665543
No 172
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=24.58 E-value=35 Score=27.56 Aligned_cols=20 Identities=15% Similarity=0.017 Sum_probs=9.8
Q ss_pred hHHHHHHHhHHHHHHHHHHH
Q 019194 221 ARWYKYASFGLTIFGTFLIA 240 (344)
Q Consensus 221 a~~~~~~~i~~~~~g~~ll~ 240 (344)
+..+-.++++++++|++++.
T Consensus 65 ~i~~Ii~gv~aGvIg~Illi 84 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILLI 84 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred ceeehhHHHHHHHHHHHHHH
Confidence 33444555555555554443
No 173
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=24.24 E-value=67 Score=35.27 Aligned_cols=44 Identities=27% Similarity=0.585 Sum_probs=29.2
Q ss_pred cccccceecccccc----eEEecC---CCccccccchhcc-----CCCccCcccccc
Q 019194 293 MPDLCVICLEQEYN----AVFVPC---GHMCCCIICSWHL-----TNCPLCRRRIDQ 337 (344)
Q Consensus 293 ~~~~C~iC~~~~~~----~~~~pC---gH~~~C~~C~~~~-----~~CP~CR~~i~~ 337 (344)
....|.||-+..-- -.|+-| +--. |..|..-- +.||.|+++..+
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpv-Cr~cyeye~~~g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPV-CKPCYEYERSEGNQCCPQCNTRYKR 69 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCcc-ccchhhhhhhcCCccCCccCCchhh
Confidence 45589999986322 134444 4334 99997532 689999988764
No 174
>KOG1705 consensus Uncharacterized conserved protein, contains CXXC motifs [Function unknown]
Probab=23.97 E-value=29 Score=26.24 Aligned_cols=33 Identities=30% Similarity=0.752 Sum_probs=22.2
Q ss_pred ccceecccccceEEecCCCccccccchhcc--CCCccCcc
Q 019194 296 LCVICLEQEYNAVFVPCGHMCCCIICSWHL--TNCPLCRR 333 (344)
Q Consensus 296 ~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~--~~CP~CR~ 333 (344)
.|+||-+- +-||.-+-.|.+|.-.- ..|.+|..
T Consensus 29 kC~ICDS~-----VRP~tlVRiC~eC~~Gs~q~~ciic~~ 63 (110)
T KOG1705|consen 29 KCVICDSY-----VRPCTLVRICDECNYGSYQGRCVICGG 63 (110)
T ss_pred cccccccc-----cccceeeeeehhcCCccccCceEEecC
Confidence 68888543 34566555688887654 57888876
No 175
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=23.88 E-value=26 Score=20.86 Aligned_cols=19 Identities=32% Similarity=0.740 Sum_probs=9.8
Q ss_pred Cccccccchhcc--------CCCccCcc
Q 019194 314 HMCCCIICSWHL--------TNCPLCRR 333 (344)
Q Consensus 314 H~~~C~~C~~~~--------~~CP~CR~ 333 (344)
|.| |..|-..+ ..||.|..
T Consensus 3 ~rf-C~~CG~~t~~~~~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 3 HRF-CGRCGAPTKPAPGGWARRCPSCGH 29 (32)
T ss_dssp TSB--TTT--BEEE-SSSS-EEESSSS-
T ss_pred Ccc-cCcCCccccCCCCcCEeECCCCcC
Confidence 556 77776654 36787764
No 176
>PRK07218 replication factor A; Provisional
Probab=23.82 E-value=1.3e+02 Score=29.87 Aligned_cols=57 Identities=26% Similarity=0.301 Sum_probs=32.2
Q ss_pred EEEEEEeec---CCCccccCCCceEEEEEeeeeeeeeeecCCCceeeceeeeeeeccEeeEEEECCceeEEEe
Q 019194 57 VTVCGRVGS---ETPISCEYSGLRGVIVEETAEQHFLKHNDAGSWIQDSALMLSMSKEVPWYLDDGTGRAFVV 126 (344)
Q Consensus 57 V~v~G~v~~---~~pl~s~~s~~~cV~~~~~i~e~~~~~~~~~~w~~~~~~i~~~~~~~pF~L~D~tg~v~V~ 126 (344)
|+|+|++.. ++.|.-.-+.+.=++..+.-.+| | ++--..--.+.|.|+|+||.+.+.
T Consensus 281 Vev~G~Iv~i~~gsgli~rCP~C~r~v~~~~C~~h-------G------~ve~~~dlrik~vLDDGtg~~~~~ 340 (423)
T PRK07218 281 VELVGNIISVRDGSGLIERCPECGRVIQKGQCRSH-------G------AVEGEDDLRIKAILDDGTGSVTVI 340 (423)
T ss_pred EEEEEEEEEeccCCcceecCcCccccccCCcCCCC-------C------CcCCeeeeEEEEEEECCCCeEEEE
Confidence 799999987 55555333333223322222222 2 122223335689999999988874
No 177
>PRK13872 conjugal transfer protein TrbF; Provisional
Probab=23.30 E-value=96 Score=27.71 Aligned_cols=36 Identities=22% Similarity=0.306 Sum_probs=24.4
Q ss_pred CCCCCeeeecCCHHHHHHHhhhhhHHHHHHHhHHHH
Q 019194 198 PHKGPFYVSPKTIDELIENLGKWARWYKYASFGLTI 233 (344)
Q Consensus 198 P~~~~f~lS~~~~~~L~~~l~~~a~~~~~~~i~~~~ 233 (344)
+.+.||+-....+++....+...++.|++++++.++
T Consensus 15 ~~~~~y~~a~~~weer~~~~~~~~~~w~~va~~~l~ 50 (228)
T PRK13872 15 EPETPYQRAAQVWDERIGSARVQARNWRLMAFGCLA 50 (228)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334588888888888888887777766644543333
No 178
>PF04076 BOF: Bacterial OB fold (BOF) protein; InterPro: IPR005220 Proteins in this entry have an OB-fold fold (oligonucleotide/oligosaccharide binding motif). Analysis of the predicted nucleotide-binding site of the OB-fold suggests that they lack nucleic acid-binding properties. They contain an predicted N-terminal signal peptide which indicates that they localise to the periplasm where they may function to bind proteins, small molecules, or other typical OB-fold ligands. As hypothesised for the distantly related OB-fold containing bacterial enterotoxins, the loss of nucleotide-binding function and the rapid evolution of the OB-fold ligand-binding site may be associated with the presence of members in mobile genetic elements and their potential role in bacterial pathogenicity [].; PDB: 1NNX_A.
Probab=23.18 E-value=2.6e+02 Score=21.76 Aligned_cols=14 Identities=29% Similarity=0.399 Sum_probs=11.9
Q ss_pred eEEEECCceeEEEe
Q 019194 113 PWYLDDGTGRAFVV 126 (344)
Q Consensus 113 pF~L~D~tg~v~V~ 126 (344)
-|...|+||+|.|+
T Consensus 51 ~Y~F~D~TG~I~Ve 64 (103)
T PF04076_consen 51 KYLFRDATGEIEVE 64 (103)
T ss_dssp EEEEEETTEEEEEE
T ss_pred EEEEECCCCcEEEE
Confidence 58889999998775
No 179
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.72 E-value=32 Score=31.14 Aligned_cols=30 Identities=20% Similarity=0.232 Sum_probs=26.8
Q ss_pred ccccceecccccceEEecCCCccccccchhc
Q 019194 294 PDLCVICLEQEYNAVFVPCGHMCCCIICSWH 324 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~ 324 (344)
-+-|..|+..-++.++.|=||+| |.+|+..
T Consensus 43 FdcCsLtLqPc~dPvit~~Gylf-drEaILe 72 (303)
T KOG3039|consen 43 FDCCSLTLQPCRDPVITPDGYLF-DREAILE 72 (303)
T ss_pred cceeeeecccccCCccCCCCeee-eHHHHHH
Confidence 35899999999999999999999 9999765
No 180
>PF10217 DUF2039: Uncharacterized conserved protein (DUF2039); InterPro: IPR019351 This entry is a region of approximately 100 residues containing three pairs of cysteine residues. The region is conserved from plants to humans but its function is unknown.
Probab=22.59 E-value=24 Score=26.92 Aligned_cols=36 Identities=25% Similarity=0.697 Sum_probs=27.4
Q ss_pred ccccceecccccceEEecCCCccccccchhccCCCccCccc
Q 019194 294 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHLTNCPLCRRR 334 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~CR~~ 334 (344)
+..|..|......-.+ |.. |..|+..+..|+-|..+
T Consensus 55 p~kC~~C~qktVk~AY----h~i-C~~Ca~~~~vCaKC~k~ 90 (92)
T PF10217_consen 55 PKKCNKCQQKTVKHAY----HVI-CDPCAKELKVCAKCGKP 90 (92)
T ss_pred CccccccccchHHHHH----HHH-HHHHHHhhccCcccCCC
Confidence 4578888876554443 665 99999999999999865
No 181
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=22.53 E-value=74 Score=35.11 Aligned_cols=44 Identities=25% Similarity=0.596 Sum_probs=28.9
Q ss_pred cccccceecccccc----eEEecC---CCccccccchhcc-----CCCccCcccccc
Q 019194 293 MPDLCVICLEQEYN----AVFVPC---GHMCCCIICSWHL-----TNCPLCRRRIDQ 337 (344)
Q Consensus 293 ~~~~C~iC~~~~~~----~~~~pC---gH~~~C~~C~~~~-----~~CP~CR~~i~~ 337 (344)
+...|.||-|..-- -.|+-| |--. |..|+.=- +.||.|++...+
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPV-CrpCYEYEr~eG~q~CPqCktrYkr 71 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPV-CRPCYEYERKDGNQSCPQCKTKYKR 71 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCcc-ccchhhhhhhcCCccCCccCCchhh
Confidence 34589999986321 234444 3334 99997522 799999987663
No 182
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.47 E-value=33 Score=35.60 Aligned_cols=40 Identities=20% Similarity=0.438 Sum_probs=28.2
Q ss_pred cccceecccccc----eEEecCCCccccccchhcc-CCCccCcccc
Q 019194 295 DLCVICLEQEYN----AVFVPCGHMCCCIICSWHL-TNCPLCRRRI 335 (344)
Q Consensus 295 ~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~-~~CP~CR~~i 335 (344)
..|.+|....-. +-.+.|+-.+ |..|...+ +.||+|-..-
T Consensus 655 r~C~vcq~pedse~~v~rt~~C~~~~-C~~c~~~~~~~~~vC~~~~ 699 (717)
T KOG3726|consen 655 RTCKVCQLPEDSETDVCRTTFCYTPY-CVACSLDYASISEVCGPDA 699 (717)
T ss_pred HHHHHhcCCcCccccccCccccCCcc-hHhhhhhhhccCcccCchh
Confidence 368888754331 2234688887 99999999 5699997543
No 183
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.41 E-value=35 Score=31.13 Aligned_cols=45 Identities=22% Similarity=0.492 Sum_probs=29.3
Q ss_pred cccccceecccccc----eEEecCCCcc----ccccchhcc------------CCCccCcccccc
Q 019194 293 MPDLCVICLEQEYN----AVFVPCGHMC----CCIICSWHL------------TNCPLCRRRIDQ 337 (344)
Q Consensus 293 ~~~~C~iC~~~~~~----~~~~pCgH~~----~C~~C~~~~------------~~CP~CR~~i~~ 337 (344)
.+..|-||+....+ .-+-||...- ...+|...| ..||.|+....-
T Consensus 19 ~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYii 83 (293)
T KOG3053|consen 19 LERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYII 83 (293)
T ss_pred cceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhee
Confidence 34589999965443 3455987443 245777766 279999976543
No 184
>PF04367 DUF502: Protein of unknown function (DUF502); InterPro: IPR007462 This entry contains proteins that are predicted to be integral membrane proteins.
Probab=21.98 E-value=2.1e+02 Score=22.25 Aligned_cols=53 Identities=21% Similarity=0.169 Sum_probs=24.3
Q ss_pred HHHHHHHHH-HHHHhccchhhHhh-cccccc----cchhHHHHHhhcC-CCccccEEEEE
Q 019194 8 SCCLSGAAL-YLLGRSSGRDAELL-KTVTRV----NQLKELAHLLDSG-SKVLPFIVTVC 60 (344)
Q Consensus 8 ~~~~~~~~~-~~~~~~~~~~~~~l-~~~~~~----~~~~~L~~~l~~~-~~~~~~~V~v~ 60 (344)
++.+.|+.. .+++++.-+..+.+ ..+|-+ ...+++-+.+... ++.+..+|.|+
T Consensus 7 ~i~~iG~l~~~~~g~~l~~~~e~ll~riP~v~~iY~~~k~~~~~~~~~~~~~f~~vVlV~ 66 (108)
T PF04367_consen 7 LIFLIGLLARNYFGKWLLNWLERLLQRIPLVKSIYSSIKQLVESFSGDKKKSFKKVVLVE 66 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHhhcccccCCeEEEEE
Confidence 344444443 44565555545443 555652 2234444444333 33355565333
No 185
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=21.88 E-value=43 Score=21.37 Aligned_cols=12 Identities=25% Similarity=0.844 Sum_probs=8.8
Q ss_pred CCCccCcc-cccc
Q 019194 326 TNCPLCRR-RIDQ 337 (344)
Q Consensus 326 ~~CP~CR~-~i~~ 337 (344)
..||.|.. .+.+
T Consensus 27 ~~CP~Cg~~~~~r 39 (42)
T PF09723_consen 27 VPCPECGSTEVRR 39 (42)
T ss_pred CcCCCCCCCceEE
Confidence 58999998 4443
No 186
>COG5235 RFA2 Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [DNA replication, recombination, and repair]
Probab=21.47 E-value=1e+02 Score=27.36 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=16.9
Q ss_pred eeeeeccEeeEEEECCceeEEEe
Q 019194 104 LMLSMSKEVPWYLDDGTGRAFVV 126 (344)
Q Consensus 104 ~i~~~~~~~pF~L~D~tg~v~V~ 126 (344)
.++...-..-|.|+||||.|.|.
T Consensus 77 ni~~~ttn~~~~iEDGTG~Ievr 99 (258)
T COG5235 77 NIKTSTTNSMFVIEDGTGSIEVR 99 (258)
T ss_pred eeeecccceEEEEecCCceEEEE
Confidence 44444555579999999998885
No 187
>PRK01343 zinc-binding protein; Provisional
Probab=21.10 E-value=53 Score=22.75 Aligned_cols=11 Identities=27% Similarity=0.779 Sum_probs=6.2
Q ss_pred CCCccCccccc
Q 019194 326 TNCPLCRRRID 336 (344)
Q Consensus 326 ~~CP~CR~~i~ 336 (344)
..||+|+.++.
T Consensus 10 ~~CP~C~k~~~ 20 (57)
T PRK01343 10 RPCPECGKPST 20 (57)
T ss_pred CcCCCCCCcCc
Confidence 35666666543
No 188
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=21.08 E-value=2.4e+02 Score=18.18 Aligned_cols=9 Identities=22% Similarity=0.822 Sum_probs=3.9
Q ss_pred HHHhHHHHH
Q 019194 226 YASFGLTIF 234 (344)
Q Consensus 226 ~~~i~~~~~ 234 (344)
|.+.++.++
T Consensus 9 W~sYg~t~l 17 (45)
T TIGR03141 9 WLAYGITAL 17 (45)
T ss_pred HHHHHHHHH
Confidence 444444443
No 189
>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]
Probab=21.01 E-value=48 Score=25.45 Aligned_cols=12 Identities=25% Similarity=0.938 Sum_probs=8.8
Q ss_pred CCCccCcccccc
Q 019194 326 TNCPLCRRRIDQ 337 (344)
Q Consensus 326 ~~CP~CR~~i~~ 337 (344)
..||.|+.+++.
T Consensus 81 ~~Cp~C~spFNp 92 (105)
T COG4357 81 GSCPYCQSPFNP 92 (105)
T ss_pred CCCCCcCCCCCc
Confidence 368888887764
No 190
>PRK13836 conjugal transfer protein TrbF; Provisional
Probab=20.98 E-value=1.1e+02 Score=27.13 Aligned_cols=36 Identities=11% Similarity=0.080 Sum_probs=27.7
Q ss_pred CCCCeeeecCCHHHHHHHhhhhhHHHHHHHhHHHHH
Q 019194 199 HKGPFYVSPKTIDELIENLGKWARWYKYASFGLTIF 234 (344)
Q Consensus 199 ~~~~f~lS~~~~~~L~~~l~~~a~~~~~~~i~~~~~ 234 (344)
.+.||+-.....++........++.|++++++.+++
T Consensus 7 ~~~py~~a~~~w~er~g~~~~~~~~W~~~a~~~l~~ 42 (220)
T PRK13836 7 PDNPYLAARQEWNERYGSYVKAAAAWRIVGILGLTM 42 (220)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345888888888888888888889898887744444
No 191
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=20.91 E-value=1.4e+02 Score=24.06 Aligned_cols=27 Identities=11% Similarity=0.119 Sum_probs=14.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 019194 225 KYASFGLTIFGTFLIAKRAIHYILQRK 251 (344)
Q Consensus 225 ~~~~i~~~~~g~~ll~~~~~r~~~~~~ 251 (344)
....|++++++.+++..+++-|+..|+
T Consensus 65 ~i~~Ii~gv~aGvIg~Illi~y~irR~ 91 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILLISYCIRRL 91 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666555545555555554333
No 192
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.77 E-value=61 Score=26.29 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=19.6
Q ss_pred ccccceecccccceEEecCCCcc
Q 019194 294 PDLCVICLEQEYNAVFVPCGHMC 316 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pCgH~~ 316 (344)
.+.=.||.+....++=..|||.|
T Consensus 57 g~hlfi~qs~~~rv~rcecghsf 79 (165)
T COG4647 57 GDHLFICQSAQKRVIRCECGHSF 79 (165)
T ss_pred CCcEEEEecccccEEEEeccccc
Confidence 44678999998888888999999
No 193
>PRK01844 hypothetical protein; Provisional
Probab=20.68 E-value=3e+02 Score=20.03 Aligned_cols=24 Identities=17% Similarity=0.044 Sum_probs=14.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHH
Q 019194 225 KYASFGLTIFGTFLIAKRAIHYIL 248 (344)
Q Consensus 225 ~~~~i~~~~~g~~ll~~~~~r~~~ 248 (344)
....++.+++|++...+.++++++
T Consensus 7 I~l~I~~li~G~~~Gff~ark~~~ 30 (72)
T PRK01844 7 ILVGVVALVAGVALGFFIARKYMM 30 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556677766677777764
No 194
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.48 E-value=44 Score=33.22 Aligned_cols=18 Identities=33% Similarity=0.669 Sum_probs=12.9
Q ss_pred ceEEecCCCccccccchhc
Q 019194 306 NAVFVPCGHMCCCIICSWH 324 (344)
Q Consensus 306 ~~~~~pCgH~~~C~~C~~~ 324 (344)
.-+.-+|||.| |+.|...
T Consensus 178 ~~v~C~~g~~F-C~~C~~~ 195 (444)
T KOG1815|consen 178 VEVDCGCGHEF-CFACGEE 195 (444)
T ss_pred cceeCCCCchh-Hhhcccc
Confidence 34455899988 8998654
No 195
>PF12123 Amidase02_C: N-acetylmuramoyl-l-alanine amidase; InterPro: IPR021976 This domain is found in bacteria and viruses. This domain is about 50 amino acids in length. This domain is classified with the enzyme classification code 3.5.1.28 from EC. This domain is the C-terminal of the enzyme which hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain cell-wall glycopeptides. ; PDB: 2L48_B.
Probab=20.30 E-value=1e+02 Score=20.25 Aligned_cols=29 Identities=21% Similarity=0.625 Sum_probs=15.0
Q ss_pred CceEEeCCCCC-CeeeecCCHHHHHHHhhhh
Q 019194 191 GTVRIQRPHKG-PFYVSPKTIDELIENLGKW 220 (344)
Q Consensus 191 G~l~i~~P~~~-~f~lS~~~~~~L~~~l~~~ 220 (344)
|.+.++ |.+| +|++|....+.-+.++..|
T Consensus 6 ~ki~~~-~~~Gl~y~vT~~~s~~~L~k~~~w 35 (45)
T PF12123_consen 6 AKIIFQ-SKDGLPYFVTDPLSDAELDKFTAW 35 (45)
T ss_dssp EEEEE--T-TS-EEEEE----HHHHHHHHHH
T ss_pred EEEEEe-cCCCcEEEEeCCCCHHHHHHHHHH
Confidence 344444 3678 8999987777766666644
Done!