Query 019194
Match_columns 344
No_of_seqs 260 out of 1342
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 12:21:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019194.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019194hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ea5_A Cell growth regulator w 99.5 3.2E-15 1.1E-19 107.8 4.3 55 290-344 11-65 (68)
2 2vje_B MDM4 protein; proto-onc 99.4 1.2E-14 4E-19 103.3 1.2 52 293-344 6-63 (63)
3 2vje_A E3 ubiquitin-protein li 99.4 4.6E-14 1.6E-18 100.5 1.9 52 293-344 7-64 (64)
4 2yho_A E3 ubiquitin-protein li 99.3 2.5E-13 8.6E-18 100.8 2.9 51 294-344 18-68 (79)
5 4ic3_A E3 ubiquitin-protein li 99.3 3E-13 1E-17 99.1 2.8 51 294-344 24-74 (74)
6 2ecg_A Baculoviral IAP repeat- 99.3 1.4E-13 4.7E-18 101.2 -0.8 52 293-344 24-75 (75)
7 3t6p_A Baculoviral IAP repeat- 99.0 6.3E-11 2.2E-15 111.5 3.5 51 294-344 295-345 (345)
8 2d8t_A Dactylidin, ring finger 98.9 3.4E-10 1.2E-14 81.9 3.4 44 293-337 14-61 (71)
9 2ysl_A Tripartite motif-contai 98.9 7E-10 2.4E-14 80.5 4.2 45 292-337 18-69 (73)
10 1chc_A Equine herpes virus-1 r 98.9 5.9E-10 2E-14 79.7 2.8 49 294-343 5-58 (68)
11 2ecn_A Ring finger protein 141 98.9 4.1E-10 1.4E-14 81.1 1.9 49 293-343 14-66 (70)
12 2csy_A Zinc finger protein 183 98.9 8.7E-10 3E-14 81.8 3.4 45 292-337 13-61 (81)
13 2ea6_A Ring finger protein 4; 98.8 1E-09 3.4E-14 78.6 2.1 45 292-337 13-68 (69)
14 4ayc_A E3 ubiquitin-protein li 98.8 9.6E-10 3.3E-14 90.2 1.7 45 294-339 53-101 (138)
15 2kiz_A E3 ubiquitin-protein li 98.8 1.8E-09 6.3E-14 77.4 2.9 47 293-340 13-66 (69)
16 2djb_A Polycomb group ring fin 98.8 2.4E-09 8.2E-14 77.6 3.5 47 291-338 12-63 (72)
17 2yur_A Retinoblastoma-binding 98.8 2.9E-09 1E-13 77.6 3.9 46 291-337 12-64 (74)
18 3ng2_A RNF4, snurf, ring finge 98.8 1.2E-09 4E-14 78.8 1.0 48 294-342 10-70 (71)
19 2xeu_A Ring finger protein 4; 98.8 1.7E-09 5.7E-14 76.2 1.5 47 295-342 4-63 (64)
20 1bor_A Transcription factor PM 98.7 1.9E-09 6.4E-14 74.2 1.4 43 294-337 6-49 (56)
21 2ecy_A TNF receptor-associated 98.7 2.5E-09 8.5E-14 76.1 2.1 45 292-337 13-62 (66)
22 2ecm_A Ring finger and CHY zin 98.7 3.1E-09 1.1E-13 72.6 2.3 42 294-336 5-54 (55)
23 2ect_A Ring finger protein 126 98.7 5.2E-09 1.8E-13 76.9 3.6 45 292-337 13-64 (78)
24 2ct2_A Tripartite motif protei 98.7 6.2E-09 2.1E-13 78.2 3.1 44 292-336 13-67 (88)
25 1iym_A EL5; ring-H2 finger, ub 98.7 6.9E-09 2.4E-13 70.8 2.4 42 294-336 5-54 (55)
26 1x4j_A Ring finger protein 38; 98.7 6E-09 2E-13 76.0 2.2 44 293-337 22-72 (75)
27 2l0b_A E3 ubiquitin-protein li 98.7 5.8E-09 2E-13 79.2 2.2 44 293-337 39-89 (91)
28 2ep4_A Ring finger protein 24; 98.7 5.3E-09 1.8E-13 76.0 1.4 47 293-340 14-67 (74)
29 2ysj_A Tripartite motif-contai 98.6 1.7E-08 5.8E-13 70.9 3.8 39 292-331 18-63 (63)
30 2egp_A Tripartite motif-contai 98.6 1E-08 3.4E-13 75.4 2.0 44 293-337 11-65 (79)
31 2ecw_A Tripartite motif-contai 98.6 2.2E-08 7.6E-13 74.4 3.9 45 292-337 17-71 (85)
32 2ecv_A Tripartite motif-contai 98.6 1.8E-08 6.1E-13 74.9 3.4 45 292-337 17-71 (85)
33 3ztg_A E3 ubiquitin-protein li 98.6 1.4E-08 4.8E-13 77.0 2.7 44 292-336 11-61 (92)
34 2y1n_A E3 ubiquitin-protein li 98.6 1.2E-08 4.2E-13 96.6 2.7 47 295-342 333-384 (389)
35 3l11_A E3 ubiquitin-protein li 98.6 2.1E-08 7.1E-13 79.4 2.8 45 292-337 13-62 (115)
36 3fl2_A E3 ubiquitin-protein li 98.6 1.2E-08 4.1E-13 82.0 1.4 44 293-337 51-99 (124)
37 1t1h_A Gspef-atpub14, armadill 98.5 2E-08 7E-13 73.7 1.9 44 293-337 7-55 (78)
38 3lrq_A E3 ubiquitin-protein li 98.5 1.5E-08 5E-13 78.3 1.1 43 293-336 21-69 (100)
39 1g25_A CDK-activating kinase a 98.5 1.6E-08 5.5E-13 71.6 1.1 42 295-337 4-55 (65)
40 1e4u_A Transcriptional repress 98.5 1.6E-08 5.6E-13 74.4 1.0 49 293-342 10-67 (78)
41 2ecj_A Tripartite motif-contai 98.5 2.9E-08 1E-12 68.3 1.9 39 292-331 13-58 (58)
42 2y43_A E3 ubiquitin-protein li 98.5 3E-08 1E-12 76.3 1.4 44 293-337 21-69 (99)
43 1z6u_A NP95-like ring finger p 98.5 3.1E-08 1.1E-12 82.3 1.4 43 294-337 78-125 (150)
44 2ckl_A Polycomb group ring fin 98.5 4.6E-08 1.6E-12 76.5 2.1 44 293-337 14-62 (108)
45 1jm7_A BRCA1, breast cancer ty 98.4 3.2E-08 1.1E-12 77.8 0.6 43 294-337 21-70 (112)
46 3hct_A TNF receptor-associated 98.4 1E-07 3.4E-12 75.9 3.1 46 291-337 15-65 (118)
47 2ckl_B Ubiquitin ligase protei 98.4 7.5E-08 2.6E-12 81.2 2.3 44 292-336 52-101 (165)
48 1wgm_A Ubiquitin conjugation f 98.4 1.8E-07 6.2E-12 71.9 3.8 47 290-337 18-69 (98)
49 2kr4_A Ubiquitin conjugation f 98.4 1.8E-07 6.3E-12 69.9 3.0 45 292-337 12-60 (85)
50 1jm7_B BARD1, BRCA1-associated 98.4 1.1E-07 3.6E-12 75.6 1.8 42 294-336 22-66 (117)
51 1rmd_A RAG1; V(D)J recombinati 98.3 9.5E-08 3.2E-12 75.7 1.0 45 292-337 21-70 (116)
52 2ecl_A Ring-box protein 2; RNF 98.3 1.2E-07 4.2E-12 70.2 1.6 42 295-337 16-76 (81)
53 2kre_A Ubiquitin conjugation f 98.3 2.5E-07 8.5E-12 71.4 2.8 46 291-337 26-75 (100)
54 1v87_A Deltex protein 2; ring- 98.3 1.2E-07 4.1E-12 74.8 0.5 42 295-337 26-94 (114)
55 4ap4_A E3 ubiquitin ligase RNF 98.3 2.1E-07 7.3E-12 75.0 1.7 43 294-337 7-60 (133)
56 4ap4_A E3 ubiquitin ligase RNF 98.2 3.5E-07 1.2E-11 73.7 1.3 49 293-342 71-132 (133)
57 3knv_A TNF receptor-associated 98.1 2.4E-07 8.2E-12 76.1 -0.3 43 292-335 29-76 (141)
58 2c2l_A CHIP, carboxy terminus 98.1 9.2E-07 3.1E-11 80.4 3.2 44 292-336 206-254 (281)
59 3dpl_R Ring-box protein 1; ubi 98.1 8.2E-07 2.8E-11 69.1 1.6 42 294-336 37-100 (106)
60 3hcs_A TNF receptor-associated 98.0 1.9E-06 6.5E-11 72.8 2.3 45 292-337 16-65 (170)
61 2f42_A STIP1 homology and U-bo 98.0 6.7E-06 2.3E-10 69.9 5.4 45 292-337 104-153 (179)
62 4a0k_B E3 ubiquitin-protein li 97.9 1.3E-06 4.4E-11 69.1 0.2 41 295-336 49-111 (117)
63 2yu4_A E3 SUMO-protein ligase 97.8 5.1E-06 1.7E-10 63.1 2.1 41 293-334 6-59 (94)
64 2d8s_A Cellular modulator of i 97.8 1.2E-05 4E-10 59.2 2.8 43 294-337 15-70 (80)
65 3htk_C E3 SUMO-protein ligase 97.7 3.2E-05 1.1E-09 69.1 5.6 45 291-336 178-231 (267)
66 3vk6_A E3 ubiquitin-protein li 97.6 1.8E-05 6E-10 59.8 1.9 44 297-341 4-53 (101)
67 1wim_A KIAA0161 protein; ring 97.3 3.4E-05 1.2E-09 58.4 -0.2 40 294-334 5-61 (94)
68 2bay_A PRE-mRNA splicing facto 97.2 0.00012 4.2E-09 50.7 2.0 49 294-343 3-58 (61)
69 1vyx_A ORF K3, K3RING; zinc-bi 96.7 0.00039 1.4E-08 48.0 0.7 43 294-336 6-58 (60)
70 2ct0_A Non-SMC element 1 homol 96.0 0.0048 1.6E-07 44.3 3.4 45 293-338 14-65 (74)
71 3k1l_B Fancl; UBC, ring, RWD, 96.0 0.0015 5.2E-08 60.4 0.7 44 293-337 307-373 (381)
72 2ko5_A Ring finger protein Z; 87.9 0.41 1.4E-05 35.4 3.3 46 294-341 28-77 (99)
73 2jun_A Midline-1; B-BOX, TRIM, 80.4 0.34 1.2E-05 36.3 0.0 29 295-324 4-35 (101)
74 3nw0_A Non-structural maintena 80.2 0.63 2.2E-05 40.9 1.7 43 295-338 181-230 (238)
75 2zet_C Melanophilin; complex, 72.5 6.1 0.00021 32.1 5.5 41 293-334 67-117 (153)
76 2cs3_A Protein C14ORF4, MY039 66.1 1.6 5.3E-05 31.3 0.5 31 294-325 15-49 (93)
77 1zbd_B Rabphilin-3A; G protein 59.8 23 0.00078 27.9 6.4 40 294-334 55-107 (134)
78 2jne_A Hypothetical protein YF 48.5 4.9 0.00017 29.9 0.6 40 294-338 32-74 (101)
79 2knc_B Integrin beta-3; transm 44.7 80 0.0027 22.3 7.3 19 243-261 34-52 (79)
80 2fiy_A Protein FDHE homolog; F 42.8 8.2 0.00028 35.1 1.4 42 293-334 181-231 (309)
81 1weo_A Cellulose synthase, cat 40.7 13 0.00043 27.2 1.8 44 293-337 15-70 (93)
82 2ks1_B Epidermal growth factor 36.9 18 0.00061 22.7 1.8 6 17-22 32-37 (44)
83 1mm2_A MI2-beta; PHD, zinc fin 34.2 23 0.00078 23.6 2.2 11 293-303 8-18 (61)
84 2l2t_A Receptor tyrosine-prote 30.5 27 0.00092 21.9 1.9 6 17-22 31-36 (44)
85 3i2d_A E3 SUMO-protein ligase 29.8 24 0.00082 32.8 2.2 43 292-335 247-298 (371)
86 3mjh_B Early endosome antigen 29.8 5 0.00017 23.8 -1.5 8 328-335 8-15 (34)
87 2d8v_A Zinc finger FYVE domain 29.2 21 0.00072 24.4 1.3 31 293-325 7-38 (67)
88 1fp0_A KAP-1 corepressor; PHD 28.9 36 0.0012 24.7 2.6 14 291-304 22-35 (88)
89 2gmg_A Hypothetical protein PF 27.5 22 0.00076 26.8 1.3 20 310-334 71-93 (105)
90 2hw2_A Rifampin ADP-ribosyl tr 26.3 38 0.0013 26.6 2.5 46 118-185 67-112 (143)
91 1z60_A TFIIH basal transcripti 26.0 24 0.00082 23.6 1.1 35 296-331 17-58 (59)
92 2k1k_A Ephrin type-A receptor 25.5 33 0.0011 20.7 1.6 6 17-22 32-37 (38)
93 2jwa_A Receptor tyrosine-prote 24.9 31 0.0011 21.6 1.4 14 4-17 19-32 (44)
94 6rxn_A Rubredoxin; electron tr 23.9 34 0.0012 21.6 1.5 14 327-340 32-45 (46)
95 4fo9_A E3 SUMO-protein ligase 23.9 35 0.0012 31.6 2.2 44 292-336 213-265 (360)
96 1nnx_A Protein YGIW; structura 23.4 1.8E+02 0.0061 21.8 5.8 14 113-126 54-67 (109)
97 3m62_A Ubiquitin conjugation f 23.0 63 0.0021 34.0 4.1 47 290-337 887-938 (968)
98 2knc_B Integrin beta-3; transm 22.7 2E+02 0.0069 20.1 7.9 34 231-264 19-52 (79)
99 4rxn_A Rubredoxin; electron tr 21.7 39 0.0013 22.1 1.5 15 327-341 38-52 (54)
100 2jvx_A NF-kappa-B essential mo 21.0 23 0.00079 19.9 0.2 9 327-335 5-13 (28)
101 2g45_A Ubiquitin carboxyl-term 20.8 49 0.0017 25.8 2.2 27 294-320 34-60 (129)
102 3c5k_A HD6, histone deacetylas 20.7 42 0.0014 25.3 1.7 26 294-320 24-49 (109)
103 2hgo_A CASSIICOLIN; toxin, dis 20.3 56 0.0019 17.5 1.6 26 296-321 2-27 (27)
104 1e8j_A Rubredoxin; iron-sulfur 20.3 43 0.0015 21.7 1.5 14 327-340 38-51 (52)
No 1
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=3.2e-15 Score=107.81 Aligned_cols=55 Identities=27% Similarity=0.645 Sum_probs=50.0
Q ss_pred CcccccccceecccccceEEecCCCccccccchhccCCCccCcccccceeecccC
Q 019194 290 DRVMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHLTNCPLCRRRIDQVVRTFRH 344 (344)
Q Consensus 290 ~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~~~~y~~ 344 (344)
...+...|+||++++++++++||||+++|..|+..+..||+||++|..++++|.+
T Consensus 11 ~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~~~i~~~ 65 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFALSGP 65 (68)
T ss_dssp SCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCSSCTTTCCCCCCEECCCSS
T ss_pred cCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcCCCCCCCCcchhceEEeecC
Confidence 3444568999999999999999999988999999999999999999999999964
No 2
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.45 E-value=1.2e-14 Score=103.26 Aligned_cols=52 Identities=25% Similarity=0.779 Sum_probs=47.2
Q ss_pred cccccceecccccceEEe--cCCCccccccchhccC----CCccCcccccceeecccC
Q 019194 293 MPDLCVICLEQEYNAVFV--PCGHMCCCIICSWHLT----NCPLCRRRIDQVVRTFRH 344 (344)
Q Consensus 293 ~~~~C~iC~~~~~~~~~~--pCgH~~~C~~C~~~~~----~CP~CR~~i~~~~~~y~~ 344 (344)
....|+||++++++.+++ ||||+++|..|+..+. .||+||++|..++++|.+
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~s 63 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFIA 63 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEEEC
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEecC
Confidence 355899999999998877 9999988999999984 999999999999999975
No 3
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.41 E-value=4.6e-14 Score=100.50 Aligned_cols=52 Identities=35% Similarity=0.773 Sum_probs=47.0
Q ss_pred cccccceecccccceEEe--cCCCccccccchhcc----CCCccCcccccceeecccC
Q 019194 293 MPDLCVICLEQEYNAVFV--PCGHMCCCIICSWHL----TNCPLCRRRIDQVVRTFRH 344 (344)
Q Consensus 293 ~~~~C~iC~~~~~~~~~~--pCgH~~~C~~C~~~~----~~CP~CR~~i~~~~~~y~~ 344 (344)
+...|+||++++++.+++ ||||+++|..|+..+ ..||+||++|..++++|.+
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~~ 64 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTYFP 64 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEECC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeeecC
Confidence 345899999999999988 999998899999988 3699999999999999974
No 4
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.35 E-value=2.5e-13 Score=100.78 Aligned_cols=51 Identities=41% Similarity=1.078 Sum_probs=47.5
Q ss_pred ccccceecccccceEEecCCCccccccchhccCCCccCcccccceeecccC
Q 019194 294 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHLTNCPLCRRRIDQVVRTFRH 344 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~~~~y~~ 344 (344)
...|+||++..++++++||||.++|..|+..+..||+||.+|...+++|.+
T Consensus 18 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~p 68 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQHVYLP 68 (79)
T ss_dssp HTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCSBCTTTCCBCCEEEECBCT
T ss_pred CCEeEEeCcccCcEEEECCCCHHHHHHHHHhcCcCCCCCchhhCeEEEEeC
Confidence 348999999999999999999977999999999999999999999999863
No 5
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.34 E-value=3e-13 Score=99.13 Aligned_cols=51 Identities=33% Similarity=0.853 Sum_probs=47.3
Q ss_pred ccccceecccccceEEecCCCccccccchhccCCCccCcccccceeecccC
Q 019194 294 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHLTNCPLCRRRIDQVVRTFRH 344 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~~~~y~~ 344 (344)
...|+||++...+.+++||||.++|..|+..+..||+||++|...+++|.|
T Consensus 24 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~S 74 (74)
T 4ic3_A 24 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKILMS 74 (74)
T ss_dssp HTBCTTTSSSBCCEEEETTCCBCCCHHHHTTCSBCTTTCCBCSEEEECBC-
T ss_pred CCCCCCCCCCCCCEEEcCCCChhHHHHhhhcCccCCCcCcCccCcEEEeeC
Confidence 458999999999999999999966999999999999999999999999975
No 6
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.4e-13 Score=101.24 Aligned_cols=52 Identities=35% Similarity=0.856 Sum_probs=47.9
Q ss_pred cccccceecccccceEEecCCCccccccchhccCCCccCcccccceeecccC
Q 019194 293 MPDLCVICLEQEYNAVFVPCGHMCCCIICSWHLTNCPLCRRRIDQVVRTFRH 344 (344)
Q Consensus 293 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~~~~y~~ 344 (344)
+...|+||++...+++++||||.++|..|+..+..||+||.+|...+++|.|
T Consensus 24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~S 75 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIFMS 75 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHCSBCTTTCCBCCCCCBCCCC
T ss_pred CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCCCCCccCCceecCcEEEecC
Confidence 3458999999999999999999955999999999999999999999999975
No 7
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=99.04 E-value=6.3e-11 Score=111.49 Aligned_cols=51 Identities=41% Similarity=1.000 Sum_probs=46.8
Q ss_pred ccccceecccccceEEecCCCccccccchhccCCCccCcccccceeecccC
Q 019194 294 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHLTNCPLCRRRIDQVVRTFRH 344 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~~~~y~~ 344 (344)
...|+||++...+++++||||.++|..|+..+..||+||.+|...+++|.|
T Consensus 295 ~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~~~CP~CR~~i~~~~~i~~s 345 (345)
T 3t6p_A 295 ERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRTFLS 345 (345)
T ss_dssp TCBCTTTSSSBCCEEEETTCCEEECTTTGGGCSBCTTTCCBCCEEEECC--
T ss_pred CCCCCccCCcCCceEEcCCCChhHhHHHHhcCCcCCCCCCCccCeEEeecC
Confidence 458999999999999999999967999999999999999999999999975
No 8
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=3.4e-10 Score=81.87 Aligned_cols=44 Identities=34% Similarity=0.824 Sum_probs=39.3
Q ss_pred cccccceecccccceEEecCCCccccccchhcc----CCCccCcccccc
Q 019194 293 MPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 337 (344)
Q Consensus 293 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~ 337 (344)
+...|.||++...+.+.+||||.| |..|+..| ..||+||.++..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 14 TVPECAICLQTCVHPVSLPCKHVF-CYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SCCBCSSSSSBCSSEEEETTTEEE-EHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCccCCcccCCCEEccCCCHH-HHHHHHHHHHCCCcCcCcCchhCH
Confidence 455899999999999999999998 99999987 589999999863
No 9
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=7e-10 Score=80.48 Aligned_cols=45 Identities=31% Similarity=0.818 Sum_probs=39.5
Q ss_pred ccccccceecccccceEEecCCCccccccchhccC-------CCccCcccccc
Q 019194 292 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHLT-------NCPLCRRRIDQ 337 (344)
Q Consensus 292 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~-------~CP~CR~~i~~ 337 (344)
.+...|+||++...+.+++||||.| |..|+..+- .||+||+++..
T Consensus 18 ~~~~~C~IC~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 18 QEEVICPICLDILQKPVTIDCGHNF-CLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCBCTTTCSBCSSEEECTTCCEE-EHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred ccCCEeccCCcccCCeEEcCCCChh-hHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 4456899999999999999999998 999999872 79999998864
No 10
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.89 E-value=5.9e-10 Score=79.75 Aligned_cols=49 Identities=37% Similarity=0.881 Sum_probs=42.3
Q ss_pred ccccceecccccc-eEEecCCCccccccchhcc----CCCccCcccccceeeccc
Q 019194 294 PDLCVICLEQEYN-AVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQVVRTFR 343 (344)
Q Consensus 294 ~~~C~iC~~~~~~-~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~~~~~y~ 343 (344)
...|+||++...+ .+.+||||.| |..|+..| ..||+||.++...++.+.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 58 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPCLHAF-CYVCITRWIRQNPTCPLCKVPVESVVHTIE 58 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEEE-STTHHHHHHHHSCSTTTTCCCCCCEECCCC
T ss_pred CCCCeeCCccccCCcEecCCCCee-HHHHHHHHHhCcCcCcCCChhhHhhhhccc
Confidence 3479999999988 5888999998 99999887 689999999998776654
No 11
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=4.1e-10 Score=81.14 Aligned_cols=49 Identities=27% Similarity=0.726 Sum_probs=42.3
Q ss_pred cccccceecccccceEEecCCCccccccchhcc----CCCccCcccccceeeccc
Q 019194 293 MPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQVVRTFR 343 (344)
Q Consensus 293 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~~~~~y~ 343 (344)
+...|.||++...+ +++||||.| |..|+..| ..||+||.++......|.
T Consensus 14 ~~~~C~IC~~~~~~-~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 66 (70)
T 2ecn_A 14 DEEECCICMDGRAD-LILPCAHSF-CQKCIDKWSDRHRNCPICRLQMTGANESSG 66 (70)
T ss_dssp CCCCCSSSCCSCCS-EEETTTEEE-CHHHHHHSSCCCSSCHHHHHCTTCCCCCCC
T ss_pred CCCCCeeCCcCccC-cccCCCCcc-cHHHHHHHHHCcCcCCCcCCcccCCCcccc
Confidence 35589999999999 888999998 99999987 589999999987766653
No 12
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=8.7e-10 Score=81.83 Aligned_cols=45 Identities=27% Similarity=0.623 Sum_probs=39.9
Q ss_pred ccccccceecccccceEEecCCCccccccchhcc----CCCccCcccccc
Q 019194 292 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 337 (344)
Q Consensus 292 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~ 337 (344)
.+...|+||++...+.+++||||.| |..|+..| ..||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (81)
T 2csy_A 13 EIPFRCFICRQAFQNPVVTKCRHYF-CESCALEHFRATPRCYICDQPTGG 61 (81)
T ss_dssp CCCSBCSSSCSBCCSEEECTTSCEE-EHHHHHHHHHHCSBCSSSCCBCCS
T ss_pred CCCCCCcCCCchhcCeeEccCCCHh-HHHHHHHHHHCCCcCCCcCccccc
Confidence 3456899999999999999999999 99999887 589999999864
No 13
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=1e-09 Score=78.57 Aligned_cols=45 Identities=31% Similarity=0.759 Sum_probs=38.2
Q ss_pred ccccccceecccccce-------EEecCCCccccccchhcc----CCCccCcccccc
Q 019194 292 VMPDLCVICLEQEYNA-------VFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 337 (344)
Q Consensus 292 ~~~~~C~iC~~~~~~~-------~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~ 337 (344)
.+...|.||++...+. ++++|||.| |..|+..| ..||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEE-EHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChh-cHHHHHHHHHcCCCCCCCCCccCc
Confidence 3456899999987665 889999998 99999988 589999998864
No 14
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.80 E-value=9.6e-10 Score=90.20 Aligned_cols=45 Identities=33% Similarity=0.733 Sum_probs=40.0
Q ss_pred ccccceecccccceEEecCCCccccccchhcc----CCCccCccccccee
Q 019194 294 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQVV 339 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~~~ 339 (344)
...|+||++...+++.+||||.| |..|+..| ..||+||.++....
T Consensus 53 ~~~C~iC~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVTLNCAHSF-CSYCINEWMKRKIECPICRKDIKSKT 101 (138)
T ss_dssp HSBCTTTCSBCSSEEEETTSCEE-EHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred cCCCcccCcccCCceECCCCCCc-cHHHHHHHHHcCCcCCCCCCcCCCCC
Confidence 34799999999999999999998 99999987 58999999997654
No 15
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.80 E-value=1.8e-09 Score=77.40 Aligned_cols=47 Identities=28% Similarity=0.668 Sum_probs=38.8
Q ss_pred cccccceecccc---cceEEecCCCccccccchhcc----CCCccCcccccceee
Q 019194 293 MPDLCVICLEQE---YNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQVVR 340 (344)
Q Consensus 293 ~~~~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~~~~ 340 (344)
....|.||++.. ..++.+||||.| |..|+..| ..||+||.++....+
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHLF-HQVCVDQWLITNKKCPICRVDIEAQLP 66 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCEE-EHHHHHHHHHHCSBCTTTCSBSCSCCC
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCHH-HHHHHHHHHHcCCCCcCcCccccCcCC
Confidence 445899997764 457889999998 99999988 689999999886554
No 16
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=2.4e-09 Score=77.56 Aligned_cols=47 Identities=28% Similarity=0.511 Sum_probs=40.4
Q ss_pred cccccccceecccccceEEe-cCCCccccccchhcc----CCCccCcccccce
Q 019194 291 RVMPDLCVICLEQEYNAVFV-PCGHMCCCIICSWHL----TNCPLCRRRIDQV 338 (344)
Q Consensus 291 ~~~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~----~~CP~CR~~i~~~ 338 (344)
..+...|.||++...+.+.+ ||||.| |..|+..| ..||+||.++...
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 12 LTPYILCSICKGYLIDATTITECLHTF-CKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp CCGGGSCTTTSSCCSSCEECSSSCCEE-CHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred cCCCCCCCCCChHHHCcCEECCCCCHH-HHHHHHHHHHcCCcCCCcCcccCcc
Confidence 34456899999999998887 999999 99999887 5899999998753
No 17
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.79 E-value=2.9e-09 Score=77.58 Aligned_cols=46 Identities=30% Similarity=0.646 Sum_probs=39.6
Q ss_pred cccccccceecccccceEEec-CCCccccccchhcc------CCCccCcccccc
Q 019194 291 RVMPDLCVICLEQEYNAVFVP-CGHMCCCIICSWHL------TNCPLCRRRIDQ 337 (344)
Q Consensus 291 ~~~~~~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~~------~~CP~CR~~i~~ 337 (344)
..+...|.||++...+.+.+| |||.| |..|+..+ ..||+||+++..
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 12 IPDELLCLICKDIMTDAVVIPCCGNSY-CDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp SCGGGSCSSSCCCCTTCEECSSSCCEE-CTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCCCCcCCChHHhCCeEcCCCCCHH-HHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 345668999999999999999 99999 99999887 379999997543
No 18
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.77 E-value=1.2e-09 Score=78.79 Aligned_cols=48 Identities=29% Similarity=0.749 Sum_probs=40.1
Q ss_pred ccccceecccccce-------EEecCCCccccccchhcc----CCCccCccccc--ceeecc
Q 019194 294 PDLCVICLEQEYNA-------VFVPCGHMCCCIICSWHL----TNCPLCRRRID--QVVRTF 342 (344)
Q Consensus 294 ~~~C~iC~~~~~~~-------~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~--~~~~~y 342 (344)
...|.||++...+. +.+||||.| |..|+..| ..||+||.++. .+.++|
T Consensus 10 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 10 TVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp CCBCTTTCCBHHHHHTTTCCEEECTTSCEE-EHHHHHHHHHHCSBCTTTCCBCCCCSCCCCC
T ss_pred CCCCcccChhhhccccccCCeEeCCCCChH-hHHHHHHHHHcCCCCCCCCCccChhheeecc
Confidence 45899999987665 889999999 99999987 69999999987 355555
No 19
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.76 E-value=1.7e-09 Score=76.20 Aligned_cols=47 Identities=30% Similarity=0.764 Sum_probs=40.0
Q ss_pred cccceecccccce-------EEecCCCccccccchhcc----CCCccCccccc--ceeecc
Q 019194 295 DLCVICLEQEYNA-------VFVPCGHMCCCIICSWHL----TNCPLCRRRID--QVVRTF 342 (344)
Q Consensus 295 ~~C~iC~~~~~~~-------~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~--~~~~~y 342 (344)
..|.||++...+. +.++|||.| |..|...| ..||+||.++. .+.++|
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEE-EHHHHHHHHHHCSBCTTTCCBCTTTCEEECC
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCch-hHHHHHHHHHcCCCCCCCCccCCccceeeee
Confidence 4799999987664 788999998 99999987 58999999987 567766
No 20
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.75 E-value=1.9e-09 Score=74.23 Aligned_cols=43 Identities=23% Similarity=0.494 Sum_probs=38.3
Q ss_pred ccccceecccccceEEecCCCccccccchhcc-CCCccCcccccc
Q 019194 294 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-TNCPLCRRRIDQ 337 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-~~CP~CR~~i~~ 337 (344)
...|.||++...+.+.+||||.| |..|...+ ..||+||+++..
T Consensus 6 ~~~C~IC~~~~~~p~~l~CgH~f-C~~Ci~~~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 6 FLRCQQCQAEAKCPKLLPCLHTL-CSGCLEASGMQCPICQAPWPL 49 (56)
T ss_dssp CSSCSSSCSSCBCCSCSTTSCCS-BTTTCSSSSSSCSSCCSSSSC
T ss_pred CCCceEeCCccCCeEEcCCCCcc-cHHHHccCCCCCCcCCcEeec
Confidence 45799999999999999999999 99999877 589999998763
No 21
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=2.5e-09 Score=76.07 Aligned_cols=45 Identities=24% Similarity=0.452 Sum_probs=39.3
Q ss_pred ccccccceecccccceEEecCCCccccccchhcc-----CCCccCcccccc
Q 019194 292 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQ 337 (344)
Q Consensus 292 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~CR~~i~~ 337 (344)
.+...|+||++...+.+.++|||.| |..|+..+ ..||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQTECGHRF-CESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCCEECTTTCCEESSCCCCSSSCCC-CHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CcCCCCCCCChHhcCeeECCCCCHH-HHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 3456899999999999889999999 99999876 479999999864
No 22
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.74 E-value=3.1e-09 Score=72.55 Aligned_cols=42 Identities=36% Similarity=0.753 Sum_probs=36.5
Q ss_pred ccccceecccccc----eEEecCCCccccccchhcc----CCCccCccccc
Q 019194 294 PDLCVICLEQEYN----AVFVPCGHMCCCIICSWHL----TNCPLCRRRID 336 (344)
Q Consensus 294 ~~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~ 336 (344)
...|.||++...+ ++++||||.| |..|+..| ..||+||.++.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLL-HRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEE-ETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcc-cHHHHHHHHHcCCcCCCCCCcCC
Confidence 3479999998755 8889999998 99999988 68999999875
No 23
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.74 E-value=5.2e-09 Score=76.90 Aligned_cols=45 Identities=24% Similarity=0.553 Sum_probs=36.7
Q ss_pred ccccccceecccc---cceEEecCCCccccccchhcc----CCCccCcccccc
Q 019194 292 VMPDLCVICLEQE---YNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 337 (344)
Q Consensus 292 ~~~~~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~ 337 (344)
.....|.||++.. ..+..+||||.| |..|+..| ..||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLF-HDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEE-ETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCee-cHHHHHHHHHcCCcCcCcCCccCC
Confidence 3456899997764 445778999998 99999987 589999999865
No 24
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=6.2e-09 Score=78.18 Aligned_cols=44 Identities=30% Similarity=0.659 Sum_probs=38.1
Q ss_pred ccccccceecccccc----eEEecCCCccccccchhcc-------CCCccCccccc
Q 019194 292 VMPDLCVICLEQEYN----AVFVPCGHMCCCIICSWHL-------TNCPLCRRRID 336 (344)
Q Consensus 292 ~~~~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~-------~~CP~CR~~i~ 336 (344)
.+...|.||++...+ .+++||||.| |..|...| ..||+||.++.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTI-CRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEE-EHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred cCCCCCccCCccccccCCCeEECCCCChh-hHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 345689999999888 8999999999 99999987 47999999764
No 25
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.67 E-value=6.9e-09 Score=70.81 Aligned_cols=42 Identities=36% Similarity=0.758 Sum_probs=35.7
Q ss_pred ccccceecccccc---eEEec-CCCccccccchhcc----CCCccCccccc
Q 019194 294 PDLCVICLEQEYN---AVFVP-CGHMCCCIICSWHL----TNCPLCRRRID 336 (344)
Q Consensus 294 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CP~CR~~i~ 336 (344)
...|.||++...+ ...+| |||.| |..|...| ..||+||.++.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~C~H~f-~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 5 GVECAVCLAELEDGEEARFLPRCGHGF-HAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp SCCCTTTCCCCCTTSCCEECSSSCCEE-CTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCcCccCCccccCCCceEECCCCCCcc-cHHHHHHHHHcCCcCcCCCCEeE
Confidence 3479999998766 77787 99998 99999988 58999999864
No 26
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.67 E-value=6e-09 Score=76.04 Aligned_cols=44 Identities=27% Similarity=0.639 Sum_probs=36.6
Q ss_pred cccccceecccccc---eEEecCCCccccccchhcc----CCCccCcccccc
Q 019194 293 MPDLCVICLEQEYN---AVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 337 (344)
Q Consensus 293 ~~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~ 337 (344)
+...|.||++...+ +..+||||.| |..|+..| ..||+||+++..
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~f-h~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEF-HAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEE-ETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHh-HHHHHHHHHHcCCcCcCcCCcCCC
Confidence 44589999976544 4788999998 99999988 689999998864
No 27
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.67 E-value=5.8e-09 Score=79.19 Aligned_cols=44 Identities=27% Similarity=0.535 Sum_probs=37.5
Q ss_pred cccccceecccccc---eEEecCCCccccccchhcc----CCCccCcccccc
Q 019194 293 MPDLCVICLEQEYN---AVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 337 (344)
Q Consensus 293 ~~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~ 337 (344)
+...|.||++.... +..+||||.| |..|+..| ..||+||.++..
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~F-h~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHYF-HKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEEE-EHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCcccChhhcCCCcEEecCCCChH-HHHHHHHHHHcCCcCcCcCccCCC
Confidence 34589999988766 7888999998 99999988 589999998764
No 28
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=5.3e-09 Score=76.02 Aligned_cols=47 Identities=30% Similarity=0.668 Sum_probs=38.5
Q ss_pred cccccceeccccc---ceEEecCCCccccccchhcc----CCCccCcccccceee
Q 019194 293 MPDLCVICLEQEY---NAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQVVR 340 (344)
Q Consensus 293 ~~~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~~~~ 340 (344)
....|.||++... ....+||||.| |..|+..| ..||+||.++....+
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~f-~~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICPCKHAF-HRKCLIKWLEVRKVCPLCNMPVLQLAQ 67 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEETTTEEE-EHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred CCCCCcCCCcccCCCCcEEEcCCCCEe-cHHHHHHHHHcCCcCCCcCcccccccc
Confidence 3558999998753 45667999998 99999988 689999999877654
No 29
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.64 E-value=1.7e-08 Score=70.92 Aligned_cols=39 Identities=36% Similarity=0.878 Sum_probs=34.4
Q ss_pred ccccccceecccccceEEecCCCccccccchhcc-------CCCccC
Q 019194 292 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-------TNCPLC 331 (344)
Q Consensus 292 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-------~~CP~C 331 (344)
.+...|+||++...+.+.+||||.| |..|+..| ..||+|
T Consensus 18 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKPVTIDCGHNF-CLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSCEECTTSSEE-CHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCeEEeCCCCcc-hHHHHHHHHHcCCCCCcCcCC
Confidence 4456899999999999999999998 99999887 279998
No 30
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.62 E-value=1e-08 Score=75.41 Aligned_cols=44 Identities=30% Similarity=0.615 Sum_probs=38.2
Q ss_pred cccccceecccccceEEecCCCccccccchhcc-----------CCCccCcccccc
Q 019194 293 MPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----------TNCPLCRRRIDQ 337 (344)
Q Consensus 293 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----------~~CP~CR~~i~~ 337 (344)
+...|.||++...+.+.+||||.| |..|...+ ..||+||.++..
T Consensus 11 ~~~~C~IC~~~~~~p~~l~CgH~f-C~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 11 EEVTCPICLELLTEPLSLDCGHSL-CRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCEETTTTEECSSCCCCSSSCCC-CHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cCCCCcCCCcccCCeeECCCCCHH-HHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 456899999999999989999999 99999865 379999998853
No 31
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.61 E-value=2.2e-08 Score=74.40 Aligned_cols=45 Identities=33% Similarity=0.573 Sum_probs=38.9
Q ss_pred ccccccceecccccceEEecCCCccccccchhcc----------CCCccCcccccc
Q 019194 292 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----------TNCPLCRRRIDQ 337 (344)
Q Consensus 292 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----------~~CP~CR~~i~~ 337 (344)
.+...|.||++...+.+.+||||.| |..|...+ ..||+||.++..
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPVSADCNHSF-CRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CTTTSCTTTCSCCSSCEECTTSCCB-CHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred ccCCCCcCCChhhCcceeCCCCCHH-HHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 3456899999999999999999998 99998874 379999998863
No 32
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.61 E-value=1.8e-08 Score=74.91 Aligned_cols=45 Identities=31% Similarity=0.659 Sum_probs=39.0
Q ss_pred ccccccceecccccceEEecCCCccccccchhcc----------CCCccCcccccc
Q 019194 292 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----------TNCPLCRRRIDQ 337 (344)
Q Consensus 292 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----------~~CP~CR~~i~~ 337 (344)
.+...|+||++...+.+.+||||.| |..|...+ ..||+||..+..
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 17 KEEVTCPICLELLTQPLSLDCGHSF-CQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCTTTCSCCSSCBCCSSSCCB-CTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred cCCCCCCCCCcccCCceeCCCCCHH-HHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 3456899999999999999999998 99998874 489999998873
No 33
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.61 E-value=1.4e-08 Score=77.02 Aligned_cols=44 Identities=32% Similarity=0.692 Sum_probs=38.6
Q ss_pred ccccccceecccccceEEec-CCCccccccchhcc------CCCccCccccc
Q 019194 292 VMPDLCVICLEQEYNAVFVP-CGHMCCCIICSWHL------TNCPLCRRRID 336 (344)
Q Consensus 292 ~~~~~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~~------~~CP~CR~~i~ 336 (344)
.+...|+||++...+.+.+| |||.| |..|+..+ ..||+||.++.
T Consensus 11 ~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTDAVVIPCCGNSY-CDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSSCEECTTTCCEE-CHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcCceECCCCCCHH-HHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 34568999999999999999 99999 99999876 38999999863
No 34
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.60 E-value=1.2e-08 Score=96.62 Aligned_cols=47 Identities=34% Similarity=0.832 Sum_probs=42.3
Q ss_pred cccceecccccceEEecCCCccccccchhcc-----CCCccCcccccceeecc
Q 019194 295 DLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQVVRTF 342 (344)
Q Consensus 295 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~CR~~i~~~~~~y 342 (344)
..|+||++...+++++||||.| |..|...| ..||+||+++.....++
T Consensus 333 ~~C~ICle~~~~pv~lpCGH~F-C~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~ 384 (389)
T 2y1n_A 333 QLCKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIKGTEPIV 384 (389)
T ss_dssp SBCTTTSSSBCCEEEETTCCEE-CHHHHHHHHHHTCSBCTTTCCBCCEEEECS
T ss_pred CCCCccCcCCCCeEEeCCCChh-hHHHHHHHHhcCCCCCCCCCCccCCceeEe
Confidence 5899999999999999999999 99999876 68999999998876654
No 35
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.57 E-value=2.1e-08 Score=79.44 Aligned_cols=45 Identities=36% Similarity=0.783 Sum_probs=39.6
Q ss_pred ccccccceecccccceEEecCCCccccccchhcc-----CCCccCcccccc
Q 019194 292 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQ 337 (344)
Q Consensus 292 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~CR~~i~~ 337 (344)
.+...|.||++...+.+.+||||.| |..|+..+ ..||+||.++..
T Consensus 13 ~~~~~C~iC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVEPVTLPCNHTL-CKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSSCEECTTSCEE-CHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCceeEcCCCCHH-hHHHHHHHHhHCcCCCCCCCcccCc
Confidence 4456899999999999999999999 99999887 379999998763
No 36
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.57 E-value=1.2e-08 Score=81.98 Aligned_cols=44 Identities=25% Similarity=0.591 Sum_probs=39.1
Q ss_pred cccccceecccccceEEecCCCccccccchhcc-----CCCccCcccccc
Q 019194 293 MPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQ 337 (344)
Q Consensus 293 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~CR~~i~~ 337 (344)
+...|+||++...+.+.+||||.| |..|+..+ ..||+||.++..
T Consensus 51 ~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTVCQHNV-CKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEE-EHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCcEEeeCCCcc-cHHHHHHHHhHCcCCCCCCCccCCC
Confidence 345899999999999999999999 99999876 389999999865
No 37
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.54 E-value=2e-08 Score=73.66 Aligned_cols=44 Identities=20% Similarity=0.218 Sum_probs=38.9
Q ss_pred cccccceecccccceEEecCCCccccccchhcc-----CCCccCcccccc
Q 019194 293 MPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQ 337 (344)
Q Consensus 293 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~CR~~i~~ 337 (344)
+...|+||++...+.+.+||||.| |..|+..+ ..||+||.++..
T Consensus 7 ~~~~C~IC~~~~~~Pv~~~CgH~f-c~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 7 EYFRCPISLELMKDPVIVSTGQTY-ERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSCTTTSCCCSSEEEETTTEEE-EHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred ccCCCCCccccccCCEEcCCCCee-cHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 456899999999999999999999 99999877 479999999853
No 38
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.54 E-value=1.5e-08 Score=78.35 Aligned_cols=43 Identities=30% Similarity=0.806 Sum_probs=38.5
Q ss_pred cccccceecccccceEE-ecCCCccccccchhcc-----CCCccCccccc
Q 019194 293 MPDLCVICLEQEYNAVF-VPCGHMCCCIICSWHL-----TNCPLCRRRID 336 (344)
Q Consensus 293 ~~~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~-----~~CP~CR~~i~ 336 (344)
+...|.||++...+.+. ++|||.| |..|+..| ..||+||.++.
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~F-C~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCSKLC-CFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCccCCccccCccccCCCCChh-hHHHHHHHHHHCcCCCCCCCCcCC
Confidence 34589999999999999 9999999 99999987 48999999875
No 39
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.53 E-value=1.6e-08 Score=71.56 Aligned_cols=42 Identities=31% Similarity=0.641 Sum_probs=34.5
Q ss_pred cccceecc-cccce----EEecCCCccccccchhcc-----CCCccCcccccc
Q 019194 295 DLCVICLE-QEYNA----VFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQ 337 (344)
Q Consensus 295 ~~C~iC~~-~~~~~----~~~pCgH~~~C~~C~~~~-----~~CP~CR~~i~~ 337 (344)
..|+||++ ...+. +++||||.+ |..|+..+ ..||+||.++..
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTL-CESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCE-EHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHh-HHHHHHHHHHcCCCcCCCCCCcccc
Confidence 47999999 44443 568999999 99999887 479999999863
No 40
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.52 E-value=1.6e-08 Score=74.39 Aligned_cols=49 Identities=29% Similarity=0.707 Sum_probs=38.3
Q ss_pred cccccceecccc--cceEEec--CCCccccccchhcc-----CCCccCcccccceeecc
Q 019194 293 MPDLCVICLEQE--YNAVFVP--CGHMCCCIICSWHL-----TNCPLCRRRIDQVVRTF 342 (344)
Q Consensus 293 ~~~~C~iC~~~~--~~~~~~p--CgH~~~C~~C~~~~-----~~CP~CR~~i~~~~~~y 342 (344)
+...|+||++.. .+..++| |||.+ |..|...+ ..||.||+++......|
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~~CGH~f-C~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~ 67 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPCTCGYQI-CRFCWHRIRTDENGLCPACRKPYPEDPAVY 67 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSSTTSCCC-CHHHHHHHTTSSCSBCTTTCCBCSSCSSCC
T ss_pred cCCcCCccCccCccccccccccCCCCCc-CHHHHHHHHhcCCCCCCCCCCccCCCchhh
Confidence 345899999976 3456666 99998 99998876 38999999987654444
No 41
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=2.9e-08 Score=68.30 Aligned_cols=39 Identities=33% Similarity=0.825 Sum_probs=34.2
Q ss_pred ccccccceecccccceEEecCCCccccccchhcc-------CCCccC
Q 019194 292 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-------TNCPLC 331 (344)
Q Consensus 292 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-------~~CP~C 331 (344)
.+...|.||++...+.+.+||||.| |..|+..+ ..||+|
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPVIIECGHNF-CKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSCCCCSSCCCC-CHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCccEeCCCCCcc-CHHHHHHHHHhcCCCCCCCCC
Confidence 3456899999999999999999998 99999887 479998
No 42
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.47 E-value=3e-08 Score=76.31 Aligned_cols=44 Identities=30% Similarity=0.661 Sum_probs=38.8
Q ss_pred cccccceecccccceEEe-cCCCccccccchhcc----CCCccCcccccc
Q 019194 293 MPDLCVICLEQEYNAVFV-PCGHMCCCIICSWHL----TNCPLCRRRIDQ 337 (344)
Q Consensus 293 ~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~----~~CP~CR~~i~~ 337 (344)
+...|.||++...+.+.+ ||||.| |..|...+ ..||+||.++..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNY-CSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCcCEECCCCCHh-hHHHHHHHHHCCCCCCCCCCcCCh
Confidence 345899999999999888 999999 99999887 589999998864
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.47 E-value=3.1e-08 Score=82.32 Aligned_cols=43 Identities=35% Similarity=0.710 Sum_probs=38.7
Q ss_pred ccccceecccccceEEecCCCccccccchhcc-----CCCccCcccccc
Q 019194 294 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQ 337 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~CR~~i~~ 337 (344)
...|+||++...+.+.+||||.| |..|+..+ ..||+||.++..
T Consensus 78 ~~~C~IC~~~~~~pv~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 78 SFMCVCCQELVYQPVTTECFHNV-CKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp HTBCTTTSSBCSSEEECTTSCEE-EHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCEeecCChhhcCCEEcCCCCch-hHHHHHHHHHhCCCcCCCCCccCCC
Confidence 45899999999999999999999 99999887 379999999874
No 44
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.46 E-value=4.6e-08 Score=76.54 Aligned_cols=44 Identities=25% Similarity=0.619 Sum_probs=39.3
Q ss_pred cccccceecccccceEEe-cCCCccccccchhcc----CCCccCcccccc
Q 019194 293 MPDLCVICLEQEYNAVFV-PCGHMCCCIICSWHL----TNCPLCRRRIDQ 337 (344)
Q Consensus 293 ~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~----~~CP~CR~~i~~ 337 (344)
+...|+||++...+.+.+ ||||.| |..|...+ ..||+||.++..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDATTIIECLHSF-CKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSSEEEETTTCCEE-EHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CcCCCccCChHHhCcCEeCCCCChh-hHHHHHHHHHhCCcCcCCCccccc
Confidence 455899999999999987 999999 99999988 589999999874
No 45
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.44 E-value=3.2e-08 Score=77.79 Aligned_cols=43 Identities=37% Similarity=0.828 Sum_probs=37.7
Q ss_pred ccccceecccccceEEecCCCccccccchhcc-------CCCccCcccccc
Q 019194 294 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-------TNCPLCRRRIDQ 337 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-------~~CP~CR~~i~~ 337 (344)
...|+||++...+.+.+||||.| |..|+..+ ..||+||.++..
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHIF-CKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCCC-CSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhcCeEECCCCCHH-HHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 34799999999999889999999 99999887 179999998863
No 46
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.41 E-value=1e-07 Score=75.85 Aligned_cols=46 Identities=30% Similarity=0.551 Sum_probs=40.3
Q ss_pred cccccccceecccccceEEecCCCccccccchhcc-----CCCccCcccccc
Q 019194 291 RVMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQ 337 (344)
Q Consensus 291 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~CR~~i~~ 337 (344)
..+...|+||++...+.+.+||||.| |..|+..+ ..||+||.++..
T Consensus 15 ~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 15 LESKYECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCcCChhhcCeEECCcCChh-hHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 34456999999999999999999999 99999887 389999999865
No 47
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.41 E-value=7.5e-08 Score=81.19 Aligned_cols=44 Identities=30% Similarity=0.670 Sum_probs=38.5
Q ss_pred ccccccceecccccceEEe-cCCCccccccchhcc-----CCCccCccccc
Q 019194 292 VMPDLCVICLEQEYNAVFV-PCGHMCCCIICSWHL-----TNCPLCRRRID 336 (344)
Q Consensus 292 ~~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~-----~~CP~CR~~i~ 336 (344)
.+...|+||++...+.+.+ ||||.| |..|+..| ..||+||.++.
T Consensus 52 ~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 52 HSELMCPICLDMLKNTMTTKECLHRF-CADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHHHBCTTTSSBCSSEEEETTTCCEE-EHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCCcccChHhhCcCEeCCCCChh-HHHHHHHHHHhCcCCCCCCCCcCC
Confidence 3456999999999998887 999999 99999987 46999999885
No 48
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.39 E-value=1.8e-07 Score=71.88 Aligned_cols=47 Identities=15% Similarity=0.010 Sum_probs=41.0
Q ss_pred CcccccccceecccccceEEecCC-Cccccccchhcc----CCCccCcccccc
Q 019194 290 DRVMPDLCVICLEQEYNAVFVPCG-HMCCCIICSWHL----TNCPLCRRRIDQ 337 (344)
Q Consensus 290 ~~~~~~~C~iC~~~~~~~~~~pCg-H~~~C~~C~~~~----~~CP~CR~~i~~ 337 (344)
...+...|+||++-..+.+.+||| |.| |..|+..+ ..||+||+++..
T Consensus 18 ~~p~~~~CpI~~~~m~dPV~~~cG~htf-~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMCDPVVLPSSRVTV-DRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp SCCTTTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cCcHhcCCcCccccccCCeECCCCCeEE-CHHHHHHHHHhCCCCCCCCCCCCh
Confidence 334567999999999999999999 999 99999887 589999998763
No 49
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.35 E-value=1.8e-07 Score=69.91 Aligned_cols=45 Identities=11% Similarity=-0.024 Sum_probs=40.2
Q ss_pred ccccccceecccccceEEecCCCccccccchhcc----CCCccCcccccc
Q 019194 292 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 337 (344)
Q Consensus 292 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~ 337 (344)
.+...|+||++-..+.+.+||||.| |..|+..+ ..||+||+++..
T Consensus 12 p~~~~CpI~~~~m~dPV~~~cGhtf-~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPVRLPSGTVM-DRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhcCCeECCCCCEE-CHHHHHHHHhcCCCCCCCcCCCCh
Confidence 4567999999999999999999999 99999887 689999998753
No 50
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.35 E-value=1.1e-07 Score=75.59 Aligned_cols=42 Identities=26% Similarity=0.524 Sum_probs=38.3
Q ss_pred ccccceecccccceEEe-cCCCccccccchhcc--CCCccCccccc
Q 019194 294 PDLCVICLEQEYNAVFV-PCGHMCCCIICSWHL--TNCPLCRRRID 336 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~--~~CP~CR~~i~ 336 (344)
...|+||++...+.+.+ ||||.| |..|+..+ ..||+||.++.
T Consensus 22 ~~~C~IC~~~~~~pv~~~~CgH~f-C~~Ci~~~~~~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILREPVCLGGCEHIF-CSNCVSDCIGTGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCSSCBCCCSSSCCB-CTTTGGGGTTTBCSSSCCBCS
T ss_pred CCCCCCCChHhhCccEeCCCCCHH-HHHHHHHHhcCCCcCCCCcCc
Confidence 45899999999999998 999999 99999998 58999999884
No 51
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.33 E-value=9.5e-08 Score=75.68 Aligned_cols=45 Identities=31% Similarity=0.589 Sum_probs=39.6
Q ss_pred ccccccceecccccceEEecCCCccccccchhcc-----CCCccCcccccc
Q 019194 292 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQ 337 (344)
Q Consensus 292 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~CR~~i~~ 337 (344)
.+...|+||++...+.+.+||||.| |..|+..+ ..||+||.++..
T Consensus 21 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 21 VKSISCQICEHILADPVETSCKHLF-CRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHHTBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cCCCCCCCCCcHhcCcEEcCCCCcc-cHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 3456899999999999999999999 99999876 479999999864
No 52
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=1.2e-07 Score=70.15 Aligned_cols=42 Identities=31% Similarity=0.606 Sum_probs=32.3
Q ss_pred cccceecccccc--------------eEEe-cCCCccccccchhcc----CCCccCcccccc
Q 019194 295 DLCVICLEQEYN--------------AVFV-PCGHMCCCIICSWHL----TNCPLCRRRIDQ 337 (344)
Q Consensus 295 ~~C~iC~~~~~~--------------~~~~-pCgH~~~C~~C~~~~----~~CP~CR~~i~~ 337 (344)
..|.||++...+ .+.+ +|||.| +..|+..| ..||+||+++..
T Consensus 16 ~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~F-H~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 16 DTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSF-HNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp SCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEE-EHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCcccChhhhccCcccccccCCCceEEEeCCCCCcc-ChHHHHHHHHhCCCCCCcCCCcch
Confidence 468888776543 4444 599999 99999988 589999998753
No 53
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.30 E-value=2.5e-07 Score=71.39 Aligned_cols=46 Identities=11% Similarity=-0.011 Sum_probs=40.6
Q ss_pred cccccccceecccccceEEecCCCccccccchhcc----CCCccCcccccc
Q 019194 291 RVMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 337 (344)
Q Consensus 291 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~ 337 (344)
..+...|+||++-..+.+.+||||.| |..|+..+ ..||+||.++..
T Consensus 26 ~p~~~~CpI~~~~m~dPV~~~cGhtf-~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDPVRLPSGTIM-DRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp CSTTTBCTTTCSBCSSEEEETTTEEE-EHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred CcHhhCCcCccCcccCCeECCCCCEE-chHHHHHHHHcCCCCCCCCCCCCh
Confidence 34567999999999999999999998 99999887 589999998763
No 54
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.28 E-value=1.2e-07 Score=74.80 Aligned_cols=42 Identities=24% Similarity=0.714 Sum_probs=33.9
Q ss_pred cccceecccccc------------------eEEecCCCccccccchhcc---------CCCccCcccccc
Q 019194 295 DLCVICLEQEYN------------------AVFVPCGHMCCCIICSWHL---------TNCPLCRRRIDQ 337 (344)
Q Consensus 295 ~~C~iC~~~~~~------------------~~~~pCgH~~~C~~C~~~~---------~~CP~CR~~i~~ 337 (344)
..|+||++.... +.++||||.| |..|+..| ..||+||..+..
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~F-h~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAF-HLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEE-CHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCCcc-cHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 479999987633 3378999999 99999876 279999988754
No 55
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.26 E-value=2.1e-07 Score=74.98 Aligned_cols=43 Identities=33% Similarity=0.829 Sum_probs=37.5
Q ss_pred ccccceecccccce-------EEecCCCccccccchhcc----CCCccCcccccc
Q 019194 294 PDLCVICLEQEYNA-------VFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 337 (344)
Q Consensus 294 ~~~C~iC~~~~~~~-------~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~ 337 (344)
...|.||++...+. +.++|||.| |..|+..| ..||+||+++..
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTCCEE-EHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCcccChhhhCccccccCeEecCCCChh-hHHHHHHHHHhCCCCCCCCCcCcc
Confidence 45899999987776 889999999 99999988 589999998873
No 56
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.18 E-value=3.5e-07 Score=73.67 Aligned_cols=49 Identities=29% Similarity=0.710 Sum_probs=41.0
Q ss_pred cccccceecccccce-------EEecCCCccccccchhcc----CCCccCccccc--ceeecc
Q 019194 293 MPDLCVICLEQEYNA-------VFVPCGHMCCCIICSWHL----TNCPLCRRRID--QVVRTF 342 (344)
Q Consensus 293 ~~~~C~iC~~~~~~~-------~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~--~~~~~y 342 (344)
+...|.||++...+. +.++|||.| |..|+..| ..||+||.++. .+.++|
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBEE-EHHHHHHHHHHCSBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCChh-hHHHHHHHHHcCCCCCCCCCcCChhcceeee
Confidence 345899999877664 888999999 99999987 69999999986 466666
No 57
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.15 E-value=2.4e-07 Score=76.07 Aligned_cols=43 Identities=26% Similarity=0.553 Sum_probs=38.3
Q ss_pred ccccccceecccccceEEecCCCccccccchhcc-----CCCccCcccc
Q 019194 292 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRI 335 (344)
Q Consensus 292 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~CR~~i 335 (344)
.+...|+||++...+.+.++|||.| |..|+..+ ..||+||.++
T Consensus 29 ~~~~~C~IC~~~~~~pv~~~CgH~F-C~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPFQAQCGHRY-CSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHGGGSCEECHHHHHTT
T ss_pred CcCcCCCCCChhhcCcEECCCCCcc-CHHHHHHHHhcCCCCCCCCCCcc
Confidence 4456999999999999999999999 99999987 3899999975
No 58
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.13 E-value=9.2e-07 Score=80.40 Aligned_cols=44 Identities=14% Similarity=-0.058 Sum_probs=39.1
Q ss_pred ccccccceecccccceEEecCCCccccccchhcc-----CCCccCccccc
Q 019194 292 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRID 336 (344)
Q Consensus 292 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~CR~~i~ 336 (344)
.....|+||++-..+++.+||||.| |..|+..+ ..||+||.++.
T Consensus 206 ~~~~~c~i~~~~~~dPv~~~~gh~f-~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 206 PDYLCGKISFELMREPCITPSGITY-DRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp CSTTBCTTTCSBCSSEEECSSCCEE-ETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred CcccCCcCcCCHhcCCeECCCCCEE-CHHHHHHHHHHCCCCCcCCCCCCc
Confidence 3456899999999999999999999 99999876 35999999986
No 59
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.09 E-value=8.2e-07 Score=69.14 Aligned_cols=42 Identities=26% Similarity=0.549 Sum_probs=33.7
Q ss_pred ccccceecccccc------------------eEEecCCCccccccchhcc----CCCccCccccc
Q 019194 294 PDLCVICLEQEYN------------------AVFVPCGHMCCCIICSWHL----TNCPLCRRRID 336 (344)
Q Consensus 294 ~~~C~iC~~~~~~------------------~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~ 336 (344)
...|.||++...+ ++.+||||.| +..|+..| ..||+||+++.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~F-H~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAF-HFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEE-EHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEE-CHHHHHHHHHcCCcCcCCCCcce
Confidence 3579999876432 4678999999 99999998 58999999853
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.00 E-value=1.9e-06 Score=72.84 Aligned_cols=45 Identities=31% Similarity=0.580 Sum_probs=40.0
Q ss_pred ccccccceecccccceEEecCCCccccccchhcc-----CCCccCcccccc
Q 019194 292 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQ 337 (344)
Q Consensus 292 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~CR~~i~~ 337 (344)
.+...|+||++...+.+.+||||.| |..|+..+ ..||+||.++..
T Consensus 16 ~~~~~C~IC~~~~~~pv~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 16 ESKYECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCChhhcCcEECCCCCHH-HHHHHHHHHHhCCCCCCCCccCcch
Confidence 4456999999999999999999999 99999887 389999998865
No 61
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.98 E-value=6.7e-06 Score=69.85 Aligned_cols=45 Identities=16% Similarity=-0.047 Sum_probs=39.7
Q ss_pred ccccccceecccccceEEecCCCccccccchhcc-----CCCccCcccccc
Q 019194 292 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQ 337 (344)
Q Consensus 292 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~CR~~i~~ 337 (344)
.+...|+||++-..+++.+||||.| |..|+..+ ..||+||.++..
T Consensus 104 p~~f~CPI~~elm~DPV~~~~Ghtf-er~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMREPCITPSGITY-DRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCCCCeECCCCCEE-CHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 4567999999999999999999999 99998876 359999998764
No 62
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.94 E-value=1.3e-06 Score=69.11 Aligned_cols=41 Identities=27% Similarity=0.577 Sum_probs=0.0
Q ss_pred cccceecccccc------------------eEEecCCCccccccchhcc----CCCccCccccc
Q 019194 295 DLCVICLEQEYN------------------AVFVPCGHMCCCIICSWHL----TNCPLCRRRID 336 (344)
Q Consensus 295 ~~C~iC~~~~~~------------------~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~ 336 (344)
+.|.||++...+ ++.+||+|.| +..|+..| ..||+||+++.
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~F-H~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAF-HFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp ----------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceE-cHHHHHHHHHcCCcCCCCCCeee
Confidence 589999977543 2345999999 99999998 58999999853
No 63
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.85 E-value=5.1e-06 Score=63.14 Aligned_cols=41 Identities=24% Similarity=0.347 Sum_probs=35.7
Q ss_pred cccccceecccccceEEec-CCCccccccchhcc---C-------CCcc--Cccc
Q 019194 293 MPDLCVICLEQEYNAVFVP-CGHMCCCIICSWHL---T-------NCPL--CRRR 334 (344)
Q Consensus 293 ~~~~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~~---~-------~CP~--CR~~ 334 (344)
+...|+||++-..+.+.+| |||.| |..|+..+ . .||+ |+..
T Consensus 6 ~~~~CPI~~~~~~dPV~~~~cGh~f-~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPVKNKVCGHTY-EEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCSSEEEESSSCCEE-EHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhcCCEEcCCCCCee-cHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 3568999999999999996 99999 99998877 2 8999 9854
No 64
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.76 E-value=1.2e-05 Score=59.21 Aligned_cols=43 Identities=26% Similarity=0.621 Sum_probs=34.9
Q ss_pred ccccceecccc--cceEEecCC-----Cccccccchhcc------CCCccCcccccc
Q 019194 294 PDLCVICLEQE--YNAVFVPCG-----HMCCCIICSWHL------TNCPLCRRRIDQ 337 (344)
Q Consensus 294 ~~~C~iC~~~~--~~~~~~pCg-----H~~~C~~C~~~~------~~CP~CR~~i~~ 337 (344)
...|.||++.. .+.+++||+ |.+ ...|+..| ..||+||..+..
T Consensus 15 ~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~f-H~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 15 QDICRICHCEGDDESPLITPCHCTGSLHFV-HQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp SCCCSSSCCCCCSSSCEECSSSCCSSSCCE-ETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCeEcCccccCCCeeEeccccCCcCCee-CHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 45899999754 345678996 999 89999998 389999998754
No 65
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.73 E-value=3.2e-05 Score=69.10 Aligned_cols=45 Identities=16% Similarity=0.301 Sum_probs=38.2
Q ss_pred cccccccceecccccceEEe-cCCCccccccchhcc------CCCcc--Cccccc
Q 019194 291 RVMPDLCVICLEQEYNAVFV-PCGHMCCCIICSWHL------TNCPL--CRRRID 336 (344)
Q Consensus 291 ~~~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~------~~CP~--CR~~i~ 336 (344)
......|+||++-..+.+.. .|||.| |..|+..+ ..||+ ||..+.
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsF-cR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVF-DRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEE-EHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred CceeeECcCccCcccCCeeeCCCCCcc-cHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 34556999999999999975 999999 99999876 26999 998764
No 66
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.62 E-value=1.8e-05 Score=59.80 Aligned_cols=44 Identities=23% Similarity=0.576 Sum_probs=33.9
Q ss_pred cceecccccc-eEEecCCCccccccchhcc-----CCCccCcccccceeec
Q 019194 297 CVICLEQEYN-AVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQVVRT 341 (344)
Q Consensus 297 C~iC~~~~~~-~~~~pCgH~~~C~~C~~~~-----~~CP~CR~~i~~~~~~ 341 (344)
|..|--.... ..++||.|+| |.+|+..+ +.||+|+.+|.++-..
T Consensus 4 C~~C~~Pi~iygRmIPCkHvF-CydCa~~~~~~~~k~Cp~C~~~V~rVe~~ 53 (101)
T 3vk6_A 4 CDKCGLPIKVYGRMIPCKHVF-CYDCAILHEKKGDKMCPGCSDPVQRIEQC 53 (101)
T ss_dssp CTTTCSBCSEEEEEETTCCEE-EHHHHHHHHHTTCCBCTTTCCBCSEEEEE
T ss_pred cCccCCCeEEEeeeccccccH-HHHHHHHHHhccCCCCcCcCCeeeeeEEe
Confidence 6666554443 4577999998 99999764 6899999999987654
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.29 E-value=3.4e-05 Score=58.40 Aligned_cols=40 Identities=23% Similarity=0.669 Sum_probs=30.5
Q ss_pred ccccceecccccce---EEecCCCccccccchhcc------------CCCcc--Cccc
Q 019194 294 PDLCVICLEQEYNA---VFVPCGHMCCCIICSWHL------------TNCPL--CRRR 334 (344)
Q Consensus 294 ~~~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~------------~~CP~--CR~~ 334 (344)
...|.||++..... .+.+|||.| |..|.... ..||. |+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~F-C~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIF-CTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEE-EHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccceEcCCCCCcc-cHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 45799999875542 234899999 99996653 27999 9987
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.21 E-value=0.00012 Score=50.74 Aligned_cols=49 Identities=14% Similarity=0.135 Sum_probs=41.2
Q ss_pred ccccceecccccceEEe-cCCCccccccchhcc----CCCccCccccc--ceeeccc
Q 019194 294 PDLCVICLEQEYNAVFV-PCGHMCCCIICSWHL----TNCPLCRRRID--QVVRTFR 343 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~----~~CP~CR~~i~--~~~~~y~ 343 (344)
...|+||++-..+.++. +|||.+ |..|+.+| .+||++++++. .++++..
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~y-er~~I~~~l~~~~~cP~t~~~L~~~~Lip~~~ 58 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIF-EKSLLEQYVKDTGNDPITNEPLSIEEIVEIVP 58 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEE-EHHHHHHHHHHHSBCTTTCCBCCGGGCEECCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEE-cHHHHHHHHHhCCCCcCCcCCCChhhcEECcc
Confidence 35799999999999999 999999 99999998 57999999885 4555543
No 69
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=96.66 E-value=0.00039 Score=47.96 Aligned_cols=43 Identities=28% Similarity=0.502 Sum_probs=33.1
Q ss_pred ccccceecccccceEEecCCCc----cccccchhcc------CCCccCccccc
Q 019194 294 PDLCVICLEQEYNAVFVPCGHM----CCCIICSWHL------TNCPLCRRRID 336 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pCgH~----~~C~~C~~~~------~~CP~CR~~i~ 336 (344)
...|.||++...+..+.||.+. +.-..|...| ..||+|+.++.
T Consensus 6 ~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 6 VPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4589999987666667897642 3478899988 47999998864
No 70
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.03 E-value=0.0048 Score=44.33 Aligned_cols=45 Identities=20% Similarity=0.428 Sum_probs=34.2
Q ss_pred cccccceecccccceEE-ecCCCccccccchhcc------CCCccCcccccce
Q 019194 293 MPDLCVICLEQEYNAVF-VPCGHMCCCIICSWHL------TNCPLCRRRIDQV 338 (344)
Q Consensus 293 ~~~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~------~~CP~CR~~i~~~ 338 (344)
....|.||++......- ..|+|.| -..|+.+| ..||+||++...-
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~f-H~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRM-HLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEE-CHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCCcCcchhhHcccCCccCCCCchh-hHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 34589999987653332 2899999 79999987 4799999987643
No 71
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=95.97 E-value=0.0015 Score=60.40 Aligned_cols=44 Identities=20% Similarity=0.573 Sum_probs=33.7
Q ss_pred cccccceecccccc--------eEEecCCCccccccchhcc---------------CCCccCcccccc
Q 019194 293 MPDLCVICLEQEYN--------AVFVPCGHMCCCIICSWHL---------------TNCPLCRRRIDQ 337 (344)
Q Consensus 293 ~~~~C~iC~~~~~~--------~~~~pCgH~~~C~~C~~~~---------------~~CP~CR~~i~~ 337 (344)
....|.|||+...+ +...+|||.| ...|..+| ..||.||.+|..
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~F-H~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKC-HAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCB-CSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCcc-chHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 34589999976544 2234899999 89999887 159999999864
No 72
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=87.94 E-value=0.41 Score=35.41 Aligned_cols=46 Identities=26% Similarity=0.715 Sum_probs=37.1
Q ss_pred ccccceecccccceEEecCCCccccccchhcc----CCCccCcccccceeec
Q 019194 294 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQVVRT 341 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~~~~~ 341 (344)
...|..|.-..++.+ .|.--++|..|...| ..||+|..++...+++
T Consensus 28 ~~nCKsCWf~~k~LV--~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 28 PQFCKSCWFENKGLV--ECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRP 77 (99)
T ss_dssp CCCCCSSCSCCSSEE--ECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCT
T ss_pred cccChhhccccCCee--eecchhhHHHHHHHHHhhccCCcccCCcCCcceec
Confidence 458999998888655 588666799999988 6899999988766553
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=80.37 E-value=0.34 Score=36.29 Aligned_cols=29 Identities=31% Similarity=0.525 Sum_probs=23.6
Q ss_pred cccceeccc-ccceEE--ecCCCccccccchhc
Q 019194 295 DLCVICLEQ-EYNAVF--VPCGHMCCCIICSWH 324 (344)
Q Consensus 295 ~~C~iC~~~-~~~~~~--~pCgH~~~C~~C~~~ 324 (344)
..|.+|.+. ...++. ++|+|.+ |..|...
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~~-C~~Cl~~ 35 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVSY-CDECLKA 35 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEEE-CHHHHHH
T ss_pred CCCcCCCCCCCCCceEECCcCChHH-hHHHCHH
Confidence 479999975 455555 8999998 9999886
No 74
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=80.23 E-value=0.63 Score=40.91 Aligned_cols=43 Identities=21% Similarity=0.478 Sum_probs=33.0
Q ss_pred cccceecccccceEEec-CCCccccccchhcc------CCCccCcccccce
Q 019194 295 DLCVICLEQEYNAVFVP-CGHMCCCIICSWHL------TNCPLCRRRIDQV 338 (344)
Q Consensus 295 ~~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~~------~~CP~CR~~i~~~ 338 (344)
..|.+|.+-......-+ |+|.+ -..|...+ ..||.|+.+...-
T Consensus 181 ~~C~iC~~iv~~g~~C~~C~~~~-H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 181 KICNICHSLLIQGQSCETCGIRM-HLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CBCTTTCSBCSSCEECSSSCCEE-CHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CcCcchhhHHhCCcccCccChHH-HHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 47999998766555443 99998 78999876 3899999887653
No 75
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=72.47 E-value=6.1 Score=32.08 Aligned_cols=41 Identities=22% Similarity=0.489 Sum_probs=27.1
Q ss_pred cccccceecccc-----cceEEecCCCccccccchhccC-----CCccCccc
Q 019194 293 MPDLCVICLEQE-----YNAVFVPCGHMCCCIICSWHLT-----NCPLCRRR 334 (344)
Q Consensus 293 ~~~~C~iC~~~~-----~~~~~~pCgH~~~C~~C~~~~~-----~CP~CR~~ 334 (344)
+...|.+|.... ....-..|.|.+ |..|....+ .|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~V-C~~C~~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFV-CKSCSHAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEE-CGGGEECCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchh-hcccccccCCCCcEeeHHHHHH
Confidence 356899999863 233445777877 888875442 57777643
No 76
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=66.13 E-value=1.6 Score=31.27 Aligned_cols=31 Identities=39% Similarity=0.793 Sum_probs=25.7
Q ss_pred ccccceecccccceEEecC----CCccccccchhcc
Q 019194 294 PDLCVICLEQEYNAVFVPC----GHMCCCIICSWHL 325 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pC----gH~~~C~~C~~~~ 325 (344)
...|.+|.++-.+..|+-| +|.| |+.|....
T Consensus 15 ~l~CtlC~erLEdtHFVQCPsv~~HkF-CFpCsr~s 49 (93)
T 2cs3_A 15 PLCCTICHERLEDTHFVQCPSVPSHKF-CFPCSRES 49 (93)
T ss_dssp SCCCSSSCSCCSSTTSEECSSCSSCEE-CHHHHHHH
T ss_pred eeEeecchhhhccCceeeCCCccCCee-eccccHHH
Confidence 4589999999999888877 4888 99998753
No 77
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=59.83 E-value=23 Score=27.94 Aligned_cols=40 Identities=25% Similarity=0.564 Sum_probs=25.2
Q ss_pred ccccceeccccc-----ceEEecCCCccccccchhcc--------CCCccCccc
Q 019194 294 PDLCVICLEQEY-----NAVFVPCGHMCCCIICSWHL--------TNCPLCRRR 334 (344)
Q Consensus 294 ~~~C~iC~~~~~-----~~~~~pCgH~~~C~~C~~~~--------~~CP~CR~~ 334 (344)
...|.+|..... ...-..|.|.+ |..|.... =.|-+|+..
T Consensus 55 ~~~C~~C~~~~g~l~~~g~~C~~C~~~V-C~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 55 VNRCILCGEQLGMLGSASVVCEDCKKNV-CTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp SSBCSSSCCBCSTTSCCEEECTTTCCEE-ETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CccccccCCCcccccCCCCCCCCCCccc-ccccCCccCCCCCccceechhhHHH
Confidence 458999997662 22334677776 77776644 146677643
No 78
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=48.51 E-value=4.9 Score=29.86 Aligned_cols=40 Identities=18% Similarity=0.398 Sum_probs=27.4
Q ss_pred ccccceecccccceEEecCCCccccccchhcc---CCCccCcccccce
Q 019194 294 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHL---TNCPLCRRRIDQV 338 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~---~~CP~CR~~i~~~ 338 (344)
...|+.|...-.. . |..+.|..|.... ..||-|.++++.+
T Consensus 32 ~~~CP~Cq~eL~~----~-g~~~hC~~C~~~f~~~a~CPdC~q~LevL 74 (101)
T 2jne_A 32 ELHCPQCQHVLDQ----D-NGHARCRSCGEFIEMKALCPDCHQPLQVL 74 (101)
T ss_dssp CCBCSSSCSBEEE----E-TTEEEETTTCCEEEEEEECTTTCSBCEEE
T ss_pred cccCccCCCccee----c-CCEEECccccchhhccccCcchhhHHHHH
Confidence 3589999865322 1 3333488887766 5799999988754
No 79
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=44.68 E-value=80 Score=22.29 Aligned_cols=19 Identities=16% Similarity=0.059 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019194 243 AIHYILQRKRRWELHRRVL 261 (344)
Q Consensus 243 ~~r~~~~~~~~~~~~~~~~ 261 (344)
....+.++|+-.+.+++.+
T Consensus 34 ~~~~i~DrrE~~kFEkE~~ 52 (79)
T 2knc_B 34 LLITIHDRKEFAKFEEERA 52 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445566777666665444
No 80
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=42.83 E-value=8.2 Score=35.10 Aligned_cols=42 Identities=19% Similarity=0.513 Sum_probs=31.9
Q ss_pred cccccceecccccceEEe----cCCCc-cccccchhcc----CCCccCccc
Q 019194 293 MPDLCVICLEQEYNAVFV----PCGHM-CCCIICSWHL----TNCPLCRRR 334 (344)
Q Consensus 293 ~~~~C~iC~~~~~~~~~~----pCgH~-~~C~~C~~~~----~~CP~CR~~ 334 (344)
....|++|-+.+.-.++. .=|+. ..|.-|...| .+||.|-..
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 356999999999877665 24532 2499999988 589999986
No 81
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=40.68 E-value=13 Score=27.17 Aligned_cols=44 Identities=34% Similarity=0.690 Sum_probs=29.1
Q ss_pred cccccceecccccc----eEEecC---CCccccccchhcc-----CCCccCcccccc
Q 019194 293 MPDLCVICLEQEYN----AVFVPC---GHMCCCIICSWHL-----TNCPLCRRRIDQ 337 (344)
Q Consensus 293 ~~~~C~iC~~~~~~----~~~~pC---gH~~~C~~C~~~~-----~~CP~CR~~i~~ 337 (344)
....|.||-+..-. -+|+-| +-- .|..|+.-. +.||.|..+..+
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FP-vCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFP-ACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCC-CCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCCh-hhHHHHHHHHhccCccccccCCcccc
Confidence 34599999887322 244444 333 388887643 799999988764
No 82
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=36.93 E-value=18 Score=22.74 Aligned_cols=6 Identities=33% Similarity=0.168 Sum_probs=2.5
Q ss_pred HHHHhc
Q 019194 17 YLLGRS 22 (344)
Q Consensus 17 ~~~~~~ 22 (344)
||+.|+
T Consensus 32 ~~~~RR 37 (44)
T 2ks1_B 32 GLFMRR 37 (44)
T ss_dssp HHHHHT
T ss_pred HHHhhh
Confidence 434443
No 83
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=34.21 E-value=23 Score=23.64 Aligned_cols=11 Identities=18% Similarity=0.748 Sum_probs=7.9
Q ss_pred cccccceeccc
Q 019194 293 MPDLCVICLEQ 303 (344)
Q Consensus 293 ~~~~C~iC~~~ 303 (344)
+...|.+|.+.
T Consensus 8 ~~~~C~vC~~~ 18 (61)
T 1mm2_A 8 HMEFCRVCKDG 18 (61)
T ss_dssp SCSSCTTTCCC
T ss_pred CCCcCCCCCCC
Confidence 34579999863
No 84
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=30.46 E-value=27 Score=21.90 Aligned_cols=6 Identities=17% Similarity=0.047 Sum_probs=2.5
Q ss_pred HHHHhc
Q 019194 17 YLLGRS 22 (344)
Q Consensus 17 ~~~~~~ 22 (344)
|++.|+
T Consensus 31 ~~~~RR 36 (44)
T 2l2t_A 31 AVYVRR 36 (44)
T ss_dssp HHHHHT
T ss_pred HHHhhh
Confidence 434443
No 85
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=29.80 E-value=24 Score=32.83 Aligned_cols=43 Identities=28% Similarity=0.660 Sum_probs=29.8
Q ss_pred ccccccceecccccc-eEEecCCCccccccchhcc--------CCCccCcccc
Q 019194 292 VMPDLCVICLEQEYN-AVFVPCGHMCCCIICSWHL--------TNCPLCRRRI 335 (344)
Q Consensus 292 ~~~~~C~iC~~~~~~-~~~~pCgH~~~C~~C~~~~--------~~CP~CR~~i 335 (344)
.....|++-+..-.. +....|.|+. |++-..-+ -.||+|...+
T Consensus 247 ~vSL~CPlS~~ri~~PvRg~~C~HlQ-CFDl~sfL~~~~~~~~W~CPIC~k~~ 298 (371)
T 3i2d_A 247 IMSLQCPISYTRMKYPSKSINCKHLQ-CFDALWFLHSQLQIPTWQCPVCQIDI 298 (371)
T ss_dssp EEESBCTTTSSBCSSEEEETTCCSSC-CEEHHHHHHHHHHSCCCBCTTTCCBC
T ss_pred EEeecCCCccccccccCcCCcCCCcc-eECHHHHHHHhhcCCceeCCCCCccc
Confidence 345589987777655 3466899997 66653322 3899999876
No 86
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=29.77 E-value=5 Score=23.81 Aligned_cols=8 Identities=38% Similarity=1.356 Sum_probs=3.5
Q ss_pred CccCcccc
Q 019194 328 CPLCRRRI 335 (344)
Q Consensus 328 CP~CR~~i 335 (344)
||+|....
T Consensus 8 CP~C~~~l 15 (34)
T 3mjh_B 8 CPQCMKSL 15 (34)
T ss_dssp CTTTCCEE
T ss_pred CcHHHHHc
Confidence 44444433
No 87
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=29.24 E-value=21 Score=24.44 Aligned_cols=31 Identities=26% Similarity=0.499 Sum_probs=23.1
Q ss_pred cccccceecccccceEEecC-CCccccccchhcc
Q 019194 293 MPDLCVICLEQEYNAVFVPC-GHMCCCIICSWHL 325 (344)
Q Consensus 293 ~~~~C~iC~~~~~~~~~~pC-gH~~~C~~C~~~~ 325 (344)
+..-|.||.+. ..+.-+.| |-++ |..|...+
T Consensus 7 e~pWC~ICneD-AtlrC~gCdgDLY-C~rC~rE~ 38 (67)
T 2d8v_A 7 GLPWCCICNED-ATLRCAGCDGDLY-CARCFREG 38 (67)
T ss_dssp CCSSCTTTCSC-CCEEETTTTSEEE-CSSHHHHH
T ss_pred CCCeeEEeCCC-CeEEecCCCCcee-hHHHHHHH
Confidence 34589999988 44666788 6776 88997765
No 88
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=28.91 E-value=36 Score=24.75 Aligned_cols=14 Identities=14% Similarity=0.506 Sum_probs=9.7
Q ss_pred cccccccceecccc
Q 019194 291 RVMPDLCVICLEQE 304 (344)
Q Consensus 291 ~~~~~~C~iC~~~~ 304 (344)
..+...|.+|.+..
T Consensus 22 d~n~~~C~vC~~~g 35 (88)
T 1fp0_A 22 DDSATICRVCQKPG 35 (88)
T ss_dssp SSSSSCCSSSCSSS
T ss_pred CCCCCcCcCcCCCC
Confidence 33455899999763
No 89
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=27.54 E-value=22 Score=26.75 Aligned_cols=20 Identities=25% Similarity=0.770 Sum_probs=14.0
Q ss_pred ecCCCccccccchhcc---CCCccCccc
Q 019194 310 VPCGHMCCCIICSWHL---TNCPLCRRR 334 (344)
Q Consensus 310 ~pCgH~~~C~~C~~~~---~~CP~CR~~ 334 (344)
..||+.| + ..+ ..||.|+..
T Consensus 71 ~~CG~~F-~----~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 71 RKCGFVF-K----AEINIPSRCPKCKSE 93 (105)
T ss_dssp TTTCCBC-C----CCSSCCSSCSSSCCC
T ss_pred hhCcCee-c----ccCCCCCCCcCCCCC
Confidence 3688887 2 233 589999975
No 90
>2hw2_A Rifampin ADP-ribosyl transferase; protein-antibiotic complex, ADP-ribosylation; HET: RFP; 1.45A {Mycobacterium smegmatis}
Probab=26.27 E-value=38 Score=26.63 Aligned_cols=46 Identities=28% Similarity=0.382 Sum_probs=29.6
Q ss_pred CCceeEEEecCCCCccceeeeeeeeeecCcccccccccccccceEEeeeeeeecccCCCceeeEeeeE
Q 019194 118 DGTGRAFVVGARGATGFVLTVGSEVFEESGRSLVRGTLDYLQGLKMLGVKRIERLLPTGTSLTVVGEA 185 (344)
Q Consensus 118 D~tg~v~V~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~r~~E~~L~~g~~l~vvGe~ 185 (344)
|+.|+|.|+.|.++..-+-++...+|+ |--+..||..| +|-|+||+
T Consensus 67 eg~~RIYiVEPtG~fEdDPNvTdKkFP---------------GNPTrSYRS~~-------PLrIvgEv 112 (143)
T 2hw2_A 67 EGRGRIFIVEPEGAIEDDPNVTDKKLP---------------GNPTRSYRTRE-------PVWIVGEL 112 (143)
T ss_dssp SSCCEEEEEEESSCCEECGGGSSSSSS---------------SCTTCEEEESS-------CEEEEEEE
T ss_pred CCCCeEEEEccCCCcccCCCccCCCCC---------------CCCccccccCC-------CcEEEEEe
Confidence 667899999888875544333333333 22245677765 68899995
No 91
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=26.00 E-value=24 Score=23.63 Aligned_cols=35 Identities=23% Similarity=0.747 Sum_probs=25.4
Q ss_pred ccceecccccceE-E--ecCCCccccccchhcc----CCCccC
Q 019194 296 LCVICLEQEYNAV-F--VPCGHMCCCIICSWHL----TNCPLC 331 (344)
Q Consensus 296 ~C~iC~~~~~~~~-~--~pCgH~~~C~~C~~~~----~~CP~C 331 (344)
.|..|.....+.. + -.|++.| |.+|..-+ ..||.|
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~F-C~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVF-CVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCB-CHHHHHTTTTTSCSSSTT
T ss_pred cccccCcccCCCccEECCccCcCc-ccchhHHHHhhccCCcCC
Confidence 5888887654432 3 3788888 99997754 689988
No 92
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=25.51 E-value=33 Score=20.69 Aligned_cols=6 Identities=17% Similarity=0.202 Sum_probs=2.8
Q ss_pred HHHHhc
Q 019194 17 YLLGRS 22 (344)
Q Consensus 17 ~~~~~~ 22 (344)
||++|+
T Consensus 32 ~~~~rr 37 (38)
T 2k1k_A 32 VFRSRR 37 (38)
T ss_dssp HHHHCC
T ss_pred HHHeec
Confidence 335554
No 93
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=24.91 E-value=31 Score=21.61 Aligned_cols=14 Identities=14% Similarity=0.114 Sum_probs=5.5
Q ss_pred chhHHHHHHHHHHH
Q 019194 4 WGGISCCLSGAALY 17 (344)
Q Consensus 4 ~g~~~~~~~~~~~~ 17 (344)
+|.+++.+.++...
T Consensus 19 VGvll~vi~~l~~~ 32 (44)
T 2jwa_A 19 VGILLVVVLGVVFG 32 (44)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34433333343333
No 94
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=23.92 E-value=34 Score=21.62 Aligned_cols=14 Identities=36% Similarity=0.736 Sum_probs=11.2
Q ss_pred CCccCcccccceee
Q 019194 327 NCPLCRRRIDQVVR 340 (344)
Q Consensus 327 ~CP~CR~~i~~~~~ 340 (344)
.||+|..+-..+.+
T Consensus 32 ~CP~Cg~~k~~F~~ 45 (46)
T 6rxn_A 32 CCPVCGVSKDQFSP 45 (46)
T ss_dssp BCTTTCCBGGGEEE
T ss_pred cCcCCCCcHHHcEe
Confidence 79999988777654
No 95
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=23.86 E-value=35 Score=31.56 Aligned_cols=44 Identities=20% Similarity=0.434 Sum_probs=30.5
Q ss_pred ccccccceecccccc-eEEecCCCccccccchhcc--------CCCccCccccc
Q 019194 292 VMPDLCVICLEQEYN-AVFVPCGHMCCCIICSWHL--------TNCPLCRRRID 336 (344)
Q Consensus 292 ~~~~~C~iC~~~~~~-~~~~pCgH~~~C~~C~~~~--------~~CP~CR~~i~ 336 (344)
.....|++-+..-.. +....|.|+. |++-..-+ -.||+|...+.
T Consensus 213 ~vSL~CPlS~~ri~~P~Rg~~C~Hlq-CFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 213 RVSLMCPLGKMRLTIPCRAVTCTHLQ-CFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp EEESBCTTTCSBCSSEEEETTCCCCC-CEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred EEeeeCCCccceeccCCcCCCCCCCc-cCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 345589988776655 3466899997 66654332 38999998764
No 96
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=23.44 E-value=1.8e+02 Score=21.82 Aligned_cols=14 Identities=21% Similarity=0.309 Sum_probs=12.2
Q ss_pred eEEEECCceeEEEe
Q 019194 113 PWYLDDGTGRAFVV 126 (344)
Q Consensus 113 pF~L~D~tg~v~V~ 126 (344)
-|...|+||.+.|+
T Consensus 54 ~Y~F~D~TG~I~Ve 67 (109)
T 1nnx_A 54 LYVFKDASGTINVD 67 (109)
T ss_dssp EEEEEETTEEEEEE
T ss_pred eEEEECCCccEEEE
Confidence 58889999999886
No 97
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=23.01 E-value=63 Score=33.95 Aligned_cols=47 Identities=13% Similarity=-0.021 Sum_probs=37.9
Q ss_pred CcccccccceecccccceEEecCCC-ccccccchhcc----CCCccCcccccc
Q 019194 290 DRVMPDLCVICLEQEYNAVFVPCGH-MCCCIICSWHL----TNCPLCRRRIDQ 337 (344)
Q Consensus 290 ~~~~~~~C~iC~~~~~~~~~~pCgH-~~~C~~C~~~~----~~CP~CR~~i~~ 337 (344)
+.++...|+|-++-.++++++|.|| .+ =..++.+| .+||+-|++...
T Consensus 887 ~iP~~F~cPIs~~lM~DPVilpsG~~Ty-dR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKDPVILPASKMNI-DRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp CSCGGGBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCcHHhCCcchhhHHhCCeEcCCCCEEE-CHHHHHHHHhcCCCCCCCCCCCCc
Confidence 3445679999999999999999986 45 56777776 689999998864
No 98
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=22.75 E-value=2e+02 Score=20.14 Aligned_cols=34 Identities=18% Similarity=-0.023 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019194 231 LTIFGTFLIAKRAIHYILQRKRRWELHRRVLAAA 264 (344)
Q Consensus 231 ~~~~g~~ll~~~~~r~~~~~~~~~~~~~~~~~~~ 264 (344)
.+++.+.++....+|.+..-.-+++..+-.++..
T Consensus 19 ~gilliGllllliwk~~~~i~DrrE~~kFEkE~~ 52 (79)
T 2knc_B 19 GAILLIGLAALLIWKLLITIHDRKEFAKFEEERA 52 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344455556677766666666655444333
No 99
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=21.70 E-value=39 Score=22.14 Aligned_cols=15 Identities=33% Similarity=0.696 Sum_probs=11.5
Q ss_pred CCccCcccccceeec
Q 019194 327 NCPLCRRRIDQVVRT 341 (344)
Q Consensus 327 ~CP~CR~~i~~~~~~ 341 (344)
.||+|......+.++
T Consensus 38 ~CP~Cg~~K~~F~~~ 52 (54)
T 4rxn_A 38 VCPLCGVGKDEFEEV 52 (54)
T ss_dssp BCTTTCCBGGGEEEC
T ss_pred cCcCCCCcHHHceEc
Confidence 799999887776653
No 100
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=21.04 E-value=23 Score=19.92 Aligned_cols=9 Identities=33% Similarity=1.003 Sum_probs=6.5
Q ss_pred CCccCcccc
Q 019194 327 NCPLCRRRI 335 (344)
Q Consensus 327 ~CP~CR~~i 335 (344)
.||+|+..-
T Consensus 5 ~CpvCk~q~ 13 (28)
T 2jvx_A 5 CCPKCQYQA 13 (28)
T ss_dssp ECTTSSCEE
T ss_pred cCccccccC
Confidence 588888654
No 101
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=20.82 E-value=49 Score=25.78 Aligned_cols=27 Identities=19% Similarity=0.145 Sum_probs=21.9
Q ss_pred ccccceecccccceEEecCCCcccccc
Q 019194 294 PDLCVICLEQEYNAVFVPCGHMCCCII 320 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pCgH~~~C~~ 320 (344)
...|..|.......+-|-|||+.||..
T Consensus 34 ~~~C~~C~~~~~LwlCL~CG~vgCgr~ 60 (129)
T 2g45_A 34 GWKCSKCDMRENLWLNLTDGSILCGRR 60 (129)
T ss_dssp BCCCSSSSCCSSEEEETTTCCEEECCB
T ss_pred CCcCccccCcCceEEeccCCccccCcc
Confidence 347999998887788889999986654
No 102
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=20.71 E-value=42 Score=25.34 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=21.6
Q ss_pred ccccceecccccceEEecCCCcccccc
Q 019194 294 PDLCVICLEQEYNAVFVPCGHMCCCII 320 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pCgH~~~C~~ 320 (344)
...|..|.......+-|-|||+. |..
T Consensus 24 ~~~C~~C~~~~~~W~CL~CG~vg-Cgr 49 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCLSCYQVY-CGR 49 (109)
T ss_dssp TCCCTTTCCCSSEEEETTTCCEE-ECT
T ss_pred CCcCccccCCCCeeeeeecCccc-cCC
Confidence 45799999988888889999998 743
No 103
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=20.29 E-value=56 Score=17.50 Aligned_cols=26 Identities=27% Similarity=0.570 Sum_probs=15.4
Q ss_pred ccceecccccceEEecCCCccccccc
Q 019194 296 LCVICLEQEYNAVFVPCGHMCCCIIC 321 (344)
Q Consensus 296 ~C~iC~~~~~~~~~~pCgH~~~C~~C 321 (344)
.|+.|.+-..-..=-.||..+.|..|
T Consensus 2 ~cvscv~fgngfcgdncgnswacsgc 27 (27)
T 2hgo_A 2 TCVSCVNFGNGFCGDNCGNSWACSGC 27 (27)
T ss_dssp CCCSCEEETTTEEECSSSCEEECSCC
T ss_pred cceEeEeecCccccCCcCCcccccCC
Confidence 46666554333333478887777655
No 104
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=20.27 E-value=43 Score=21.67 Aligned_cols=14 Identities=29% Similarity=0.800 Sum_probs=10.5
Q ss_pred CCccCcccccceee
Q 019194 327 NCPLCRRRIDQVVR 340 (344)
Q Consensus 327 ~CP~CR~~i~~~~~ 340 (344)
.||+|..+-..+.+
T Consensus 38 ~CP~Cg~~K~~F~~ 51 (52)
T 1e8j_A 38 ACPVCGASKDAFEK 51 (52)
T ss_dssp CCSSSCCCTTSCEE
T ss_pred cCCCCCCcHHHcEE
Confidence 68988887766654
Done!