BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019197
(344 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/302 (28%), Positives = 142/302 (47%), Gaps = 23/302 (7%)
Query: 49 ISQLLAGGVAGALSKTCTAPLARLTILFQVQGMHSD-TATLRKASIWREASRIISEEGFR 107
+ LAGGVA A+SKT AP+ R+ +L QVQ +A + I RI E+GF
Sbjct: 8 LKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFL 67
Query: 108 AFWKGNLVTIAHRLPYSSVNFYAYEHYKKLLHAIPVVESQGENMSSDLFVHFV----SGG 163
+FW+GNL + P ++NF + YK++ G + + +F SGG
Sbjct: 68 SFWRGNLANVIRYFPTQALNFAFKDKYKQIFLG-------GVDRHKQFWRYFAGNLASGG 120
Query: 164 LAGITAASVTYPLDLVRTRLAAQTNV----IYYRGICHALQTICRDEGIWGLYKGLGATL 219
AG T+ YPLD RTRLAA + G+ + + I + +G+ GLY+G ++
Sbjct: 121 AAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSV 180
Query: 220 LGVGPSIAISFSVYETLRSFWQSRRQNDSPVLVSLACGSLSGIASSTATFPLDLVRRRKQ 279
G+ A F VY+T + + + ++VS + ++P D VRRR
Sbjct: 181 QGIIIYRAAYFGVYDTAKGMLPDPK--NVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMM 238
Query: 280 LEGAGGRARVYTTGLFGTFQYIFRTEGFRGLYRGILPEYYKVVPGVGICF--MTYETLKM 337
++ A + TG ++ I + EG + ++G + V+ G+G F + Y+ +K
Sbjct: 239 MQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKG---AWSNVLRGMGGAFVLVLYDEIKK 295
Query: 338 LL 339
+
Sbjct: 296 FV 297
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 87/194 (44%), Gaps = 10/194 (5%)
Query: 158 HFVSGGLAGITAASVTYPLDLVRTRLAAQ------TNVIYYRGICHALQTICRDEGIWGL 211
F++GG+A + + P++ V+ L Q + Y+GI + I +++G
Sbjct: 10 DFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSF 69
Query: 212 YKGLGATLLGVGPSIAISFSVYETLRSFW----QSRRQNDSPVLVSLACGSLSGIASSTA 267
++G A ++ P+ A++F+ + + + +Q +LA G +G S
Sbjct: 70 WRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCF 129
Query: 268 TFPLDLVRRRKQLEGAGGRARVYTTGLFGTFQYIFRTEGFRGLYRGILPEYYKVVPGVGI 327
+PLD R R + G A+ TGL IF+++G RGLY+G ++
Sbjct: 130 VYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAA 189
Query: 328 CFMTYETLKMLLAD 341
F Y+T K +L D
Sbjct: 190 YFGVYDTAKGMLPD 203
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/305 (23%), Positives = 124/305 (40%), Gaps = 38/305 (12%)
Query: 51 QLLAGGVAGALSKTCTAPL----ARLTILFQVQGMHSDTATLRKASIWREASRIISEEGF 106
+ L G A ++ T PL RL I + QG+ A+ + + ++ EG
Sbjct: 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGP 63
Query: 107 RAFWKGNLVTIAHRLPYSSVNFYAYEHYKKLLHAIPVVESQGENMSSDLFVHFVSGGLAG 166
R+ + G + + ++ ++SV Y+ K+ S+ + S L ++G G
Sbjct: 64 RSLYNGLVAGLQRQMSFASVRIGLYDSVKQFY----TKGSEHAGIGSRL----LAGSTTG 115
Query: 167 ITAASVTYPLDLVRTRLAAQTNV---IYYRGICHALQTICRDEGIWGLYKGLGATLLGVG 223
A +V P D+V+ R AQ Y+ A +TI R+EGI GL+KG +
Sbjct: 116 ALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNA 175
Query: 224 PSIAISFSVYETLRS--FWQSRRQNDSPVLVSLACGSLSGIASSTATFPLDLVRRRKQLE 281
Y+ ++ + +D P + A G+ G ++ P+D+V+ R
Sbjct: 176 IVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGA--GFCTTVIASPVDVVKTR---- 229
Query: 282 GAGGRARVYTTGLFGTFQ-------YIFRTEGFRGLYRGILPEYYKVVPGVGICFMTYET 334
Y G + + R EG R Y+G +P + ++ + F+TYE
Sbjct: 230 --------YMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQ 281
Query: 335 LKMLL 339
LK L
Sbjct: 282 LKRAL 286
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 84/202 (41%), Gaps = 16/202 (7%)
Query: 47 GTISQLLAGGVAGALSKTCTAPLARLTILFQVQGMHSDTATLRKASIWREASRIIS-EEG 105
G S+LLAG GAL+ P + + FQ Q R+ EA + I+ EEG
Sbjct: 103 GIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGG---RRYQSTVEAYKTIAREEG 159
Query: 106 FRAFWKGNLVTIAHRLPYSSVNFYAYEHYKKLLHAIPVVESQGENMSSDLFVHFVSGGLA 165
R WKG +A + Y+ K L + M+ DL HF S A
Sbjct: 160 IRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLL-------KANLMTDDLPCHFTSAFGA 212
Query: 166 GITAASVTYPLDLVRTRLAAQTNVIYYRGICHALQTICRDEGIWGLYKGLGATLLGVGPS 225
G + P+D+V+TR + + Y H T+ R EG YKG + L +G
Sbjct: 213 GFCTTVIASPVDVVKTRY-MNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSW 271
Query: 226 IAISFSVYETLR----SFWQSR 243
+ F YE L+ + +QSR
Sbjct: 272 NVVMFVTYEQLKRALMAAYQSR 293
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 11/172 (6%)
Query: 155 LFVHFVSGGLAGITAASVTYPLDLVRTRLAAQ---------TNVIYYRGICHALQTICRD 205
+ V F+ G A A +T+PLD + RL Q YRG+ + T+ R
Sbjct: 1 MTVKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRT 60
Query: 206 EGIWGLYKGLGATLLGVGPSIAISFSVYETLRSFWQSRRQNDSPVLVSLACGSLSGIASS 265
EG LY GL A L ++ +Y++++ F+ ++ + + L GS +G +
Sbjct: 61 EGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFY-TKGSEHAGIGSRLLAGSTTGALAV 119
Query: 266 TATFPLDLVRRRKQLEGAGGRARVYTTGLFGTFQYIFRTEGFRGLYRGILPE 317
P D+V+ R Q + G R Y + + ++ I R EG RGL++G P
Sbjct: 120 AVAQPTDVVKVRFQAQARAGGGRRYQSTV-EAYKTIAREEGIRGLWKGTSPN 170
>pdb|2I3O|A Chain A, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
pdb|2I3O|B Chain B, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
pdb|2I3O|C Chain C, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
pdb|2I3O|D Chain D, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
Length = 516
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 96 EASRIISEEGFRAFWKGNLVTI 117
E+ R+ SEEGFR+F+ G+L I
Sbjct: 190 ESFRLXSEEGFRSFYDGSLADI 211
>pdb|3T24|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Opdq
pdb|3T24|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Opdq
pdb|3T24|C Chain C, Crystal Structure Of Pseudomonas Aeruginosa Opdq
Length = 401
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 110 WKGNLVTIAHRLPYSSVNFYAYEHYKKLLHAIPVVESQGENMSSDL 155
W NL T H Y ++ + +HY L+H +P+ + Q ++ SD+
Sbjct: 201 WTDNLSTSYH---YGKLDNFYKQHYLGLVHTLPIADKQ--SLKSDI 241
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,808,013
Number of Sequences: 62578
Number of extensions: 344987
Number of successful extensions: 692
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 671
Number of HSP's gapped (non-prelim): 9
length of query: 344
length of database: 14,973,337
effective HSP length: 100
effective length of query: 244
effective length of database: 8,715,537
effective search space: 2126591028
effective search space used: 2126591028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)