Query 019197
Match_columns 344
No_of_seqs 180 out of 2117
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 12:23:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019197.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019197hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 100.0 1.8E-56 6.2E-61 398.0 27.1 289 45-339 4-297 (297)
2 2lck_A Mitochondrial uncouplin 100.0 2.5E-56 8.4E-61 398.0 23.1 279 50-341 3-288 (303)
3 2lck_A Mitochondrial uncouplin 100.0 2.2E-40 7.7E-45 294.9 13.6 225 7-241 55-287 (303)
4 1okc_A ADP, ATP carrier protei 100.0 4.3E-39 1.5E-43 286.0 16.4 222 7-239 58-296 (297)
5 3tgu_G UQCRQ, mitochondrial ub 37.9 13 0.00044 24.9 1.4 38 305-342 32-69 (81)
6 3vjj_A P9-1; 3.00A {Rice black 34.5 17 0.00059 30.3 1.9 36 262-307 273-308 (368)
7 3cx5_H Cytochrome B-C1 complex 28.5 33 0.0011 23.6 2.2 38 305-342 42-79 (93)
8 1pp9_G Ubiquinol-cytochrome C 24.5 25 0.00087 23.5 1.0 38 305-342 32-69 (81)
9 4b19_A PEPA1; toxin, toxin apo 13.2 28 0.00097 18.2 -0.6 22 252-273 5-26 (30)
10 1y9i_A Low temperature require 13.1 2.4E+02 0.0083 21.8 4.3 48 122-171 111-158 (178)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.8e-56 Score=398.01 Aligned_cols=289 Identities=28% Similarity=0.501 Sum_probs=246.0
Q ss_pred chhhHHHHHHHhHHHHHHHHhhchhHHHHHHHHhcCCCCC-cchhhhchHHHHHHHHHHhhhhhhhccchHHhhhchhhh
Q 019197 45 QIGTISQLLAGGVAGALSKTCTAPLARLTILFQVQGMHSD-TATLRKASIWREASRIISEEGFRAFWKGNLVTIAHRLPY 123 (344)
Q Consensus 45 ~~~~~~~~~~g~~a~~~~~~i~~Pld~vk~~~q~~~~~~~-~~~~~~~~~~~~~~~i~~~~G~~~l~rG~~~~~~~~~~~ 123 (344)
..+..+++++|++|++++.++++|+|++|+|+|++..... ....++.+.++++++++++||+++||||+.+++++.++.
T Consensus 4 ~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~ 83 (297)
T 1okc_A 4 ALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPT 83 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHH
Confidence 4567789999999999999999999999999999854221 123457899999999999999999999999999999999
Q ss_pred HhHHHhhHHHHHHHHhcCCcccccCCCCchhhHHHHHHHHHHHHHHhhhcchHHHHHHHHhhccC----CcccCcHHHHH
Q 019197 124 SSVNFYAYEHYKKLLHAIPVVESQGENMSSDLFVHFVSGGLAGITAASVTYPLDLVRTRLAAQTN----VIYYRGICHAL 199 (344)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~v~~Pld~ik~r~q~~~~----~~~~~~~~~~~ 199 (344)
.+++|.+||.+++.+..... .......+....+++|++||+++.++++|+|++|+|+|++.. ...|++.++++
T Consensus 84 ~~~~f~~ye~~k~~~~~~~~---~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~ 160 (297)
T 1okc_A 84 QALNFAFKDKYKQIFLGGVD---RHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCI 160 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCC---TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHH
T ss_pred HHHHHHHHHHHHHHhccccC---cccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHH
Confidence 99999999999996533111 111112345778999999999999999999999999999853 34689999999
Q ss_pred HHHHHhhCcccccccchhhhhhhhhhHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Q 019197 200 QTICRDEGIWGLYKGLGATLLGVGPSIAISFSVYETLRSFWQSRRQNDSPVLVSLACGSLSGIASSTATFPLDLVRRRKQ 279 (344)
Q Consensus 200 ~~i~~~~G~~~ly~G~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~~~~~~Pld~vk~r~q 279 (344)
++|+++||+++||+|+.++++++++..+++|.+||.+|+.+.+.. +.+....+++|.++|++++++++|+|+||+|+|
T Consensus 161 ~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~--~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q 238 (297)
T 1okc_A 161 TKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK--NVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMM 238 (297)
T ss_dssp HHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG--CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCC--CccHHHHHHHHHHHHHHHHHhcChHHHHHHHHh
Confidence 999999999999999999999999999999999999999775432 345678899999999999999999999999999
Q ss_pred hccCCCCcccccCCHHHHHHHHHHhccccccccchhhhhhccccchhhHHHHHHHHHHHH
Q 019197 280 LEGAGGRARVYTTGLFGTFQYIFRTEGFRGLYRGILPEYYKVVPGVGICFMTYETLKMLL 339 (344)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~i~~~eG~~~lyrG~~~~~~~~~~~~~~~~~~ye~~~~~l 339 (344)
.+......+..|.++++|+++|+++||++|||||+.++++|. +.+++.|++||.+|+++
T Consensus 239 ~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 239 MQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp TTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred hcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 986543334456999999999999999999999999999996 57899999999998764
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=2.5e-56 Score=398.00 Aligned_cols=279 Identities=22% Similarity=0.369 Sum_probs=250.1
Q ss_pred HHHHHHhHHHHHHHHhhchhHHHHHHHHhcCCCCC----cchhhhchHHHHHHHHHHhhhhhhhccchHHhhhchhhhHh
Q 019197 50 SQLLAGGVAGALSKTCTAPLARLTILFQVQGMHSD----TATLRKASIWREASRIISEEGFRAFWKGNLVTIAHRLPYSS 125 (344)
Q Consensus 50 ~~~~~g~~a~~~~~~i~~Pld~vk~~~q~~~~~~~----~~~~~~~~~~~~~~~i~~~~G~~~l~rG~~~~~~~~~~~~~ 125 (344)
.++++|++|++++.++++|+|++|+|+|++..... ....++.+.++++++++++||+++||||+.+++++.++..+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 36899999999999999999999999999864321 01235789999999999999999999999999999999999
Q ss_pred HHHhhHHHHHHHHhcCCcccccCCCCchhhHHHHHHHHHHHHHHhhhcchHHHHHHHHhhccC---CcccCcHHHHHHHH
Q 019197 126 VNFYAYEHYKKLLHAIPVVESQGENMSSDLFVHFVSGGLAGITAASVTYPLDLVRTRLAAQTN---VIYYRGICHALQTI 202 (344)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~v~~Pld~ik~r~q~~~~---~~~~~~~~~~~~~i 202 (344)
++|.+||.+++.+.+.. + ..+....+++|++||+++.++++|+|++|+|+|++.. ...|.+.++++++|
T Consensus 83 i~f~~ye~~k~~~~~~~------~--~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i 154 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGS------E--HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTI 154 (303)
T ss_dssp HTTTHHHHHHHHHSCCC------S--SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC------c--CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHH
Confidence 99999999999886421 1 2566788999999999999999999999999999863 44789999999999
Q ss_pred HHhhCcccccccchhhhhhhhhhHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhccchHHHHHHHHHhcc
Q 019197 203 CRDEGIWGLYKGLGATLLGVGPSIAISFSVYETLRSFWQSRRQNDSPVLVSLACGSLSGIASSTATFPLDLVRRRKQLEG 282 (344)
Q Consensus 203 ~~~~G~~~ly~G~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~~~~~~Pld~vk~r~q~~~ 282 (344)
+++||+++||+|+.++++++++..+++|.+||.+|+.+.+....+.+....+++|.++|++++++++|+|+||+|+|.+.
T Consensus 155 ~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~ 234 (303)
T 2lck_A 155 AREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSA 234 (303)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999998765544566778999999999999999999999999999975
Q ss_pred CCCCcccccCCHHHHHHHHHHhccccccccchhhhhhccccchhhHHHHHHHHHHHHhh
Q 019197 283 AGGRARVYTTGLFGTFQYIFRTEGFRGLYRGILPEYYKVVPGVGICFMTYETLKMLLAD 341 (344)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~i~~~eG~~~lyrG~~~~~~~~~~~~~~~~~~ye~~~~~l~~ 341 (344)
.. .|.++++|+++|+++||++|||||+.++++|.+|.+++.|.+||.+|+.+.+
T Consensus 235 ~~-----~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~ 288 (303)
T 2lck_A 235 LG-----QYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMA 288 (303)
T ss_dssp SS-----SCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred cc-----ccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 42 3589999999999999999999999999999999999999999999988753
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=2.2e-40 Score=294.94 Aligned_cols=225 Identities=27% Similarity=0.374 Sum_probs=193.8
Q ss_pred heeeeeccccccccccCcccccccChH--------HHHHHHhhccCchhhHHHHHHHhHHHHHHHHhhchhHHHHHHHHh
Q 019197 7 VGVVVEGGQRGLSSGNGSVSVDKITLQ--------QQQKQMLQNQSQIGTISQLLAGGVAGALSKTCTAPLARLTILFQV 78 (344)
Q Consensus 7 ~~~~~~~g~~~l~~G~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~i~~Pld~vk~~~q~ 78 (344)
..++++||++|||||++++++..+|.. ..+..+.+.....+....+++|++|++++.++++|+|++|+|+|+
T Consensus 55 ~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~ 134 (303)
T 2lck_A 55 LTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQA 134 (303)
T ss_dssp HHHHHHHCHHHHHSSHHHHHHHHHHHHHHTTTHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHhhCHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhc
Confidence 457889999999999999998877764 233333222124667889999999999999999999999999999
Q ss_pred cCCCCCcchhhhchHHHHHHHHHHhhhhhhhccchHHhhhchhhhHhHHHhhHHHHHHHHhcCCcccccCCCCchhhHHH
Q 019197 79 QGMHSDTATLRKASIWREASRIISEEGFRAFWKGNLVTIAHRLPYSSVNFYAYEHYKKLLHAIPVVESQGENMSSDLFVH 158 (344)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~i~~~~G~~~l~rG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (344)
+.... ...++.+.++++++++++||+++||||+.+++++.++..+++|.+||.+++.+.+.. ....+....
T Consensus 135 ~~~~~--~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~-------~~~~~~~~~ 205 (303)
T 2lck_A 135 QARAG--GGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN-------LMTDDLPCH 205 (303)
T ss_dssp SCSCC--CSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT-------SCCSCHHHH
T ss_pred ccccC--CCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------CCCCchHHH
Confidence 86431 233578999999999999999999999999999999999999999999999876421 112455678
Q ss_pred HHHHHHHHHHHhhhcchHHHHHHHHhhccCCcccCcHHHHHHHHHHhhCcccccccchhhhhhhhhhHHHHHHHHHHHHH
Q 019197 159 FVSGGLAGITAASVTYPLDLVRTRLAAQTNVIYYRGICHALQTICRDEGIWGLYKGLGATLLGVGPSIAISFSVYETLRS 238 (344)
Q Consensus 159 ~~~g~~ag~~~~~v~~Pld~ik~r~q~~~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~~~~~~y~~~~~ 238 (344)
+++|++||++++++++|+|++|+|+|.+.. ..|.++++++++|+++||++|||+|+.|++++.+|..+++|.+||.+|+
T Consensus 206 ~~~g~~ag~~~~~~~~P~dvvktrlq~~~~-~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~ 284 (303)
T 2lck_A 206 FTSAFGAGFCTTVIASPVDVVKTRYMNSAL-GQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKR 284 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCS-SSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHhccc-cccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999864 3689999999999999999999999999999999999999999999998
Q ss_pred HHh
Q 019197 239 FWQ 241 (344)
Q Consensus 239 ~~~ 241 (344)
.+.
T Consensus 285 ~l~ 287 (303)
T 2lck_A 285 ALM 287 (303)
T ss_dssp CCC
T ss_pred HHH
Confidence 764
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=4.3e-39 Score=285.99 Aligned_cols=222 Identities=23% Similarity=0.317 Sum_probs=183.8
Q ss_pred heeeeeccccccccccCcccccccChHH--------HHHHHhhcc-C--c--hhhHHHHHHHhHHHHHHHHhhchhHHHH
Q 019197 7 VGVVVEGGQRGLSSGNGSVSVDKITLQQ--------QQKQMLQNQ-S--Q--IGTISQLLAGGVAGALSKTCTAPLARLT 73 (344)
Q Consensus 7 ~~~~~~~g~~~l~~G~~~~~~~~~~~~~--------~~~~~~~~~-~--~--~~~~~~~~~g~~a~~~~~~i~~Pld~vk 73 (344)
..++++||++|||||+.++++..+|... .+..+.... . . .+....+++|++|++++.++++|+|++|
T Consensus 58 ~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vk 137 (297)
T 1okc_A 58 VRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFAR 137 (297)
T ss_dssp HHHHHHHCGGGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccchhheecccHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence 4578899999999999999998888742 222222211 1 1 2346789999999999999999999999
Q ss_pred HHHHhcCCCCCcchhhhchHHHHHHHHHHhhhhhhhccchHHhhhchhhhHhHHHhhHHHHHHHHhcCCcccccCCCCch
Q 019197 74 ILFQVQGMHSDTATLRKASIWREASRIISEEGFRAFWKGNLVTIAHRLPYSSVNFYAYEHYKKLLHAIPVVESQGENMSS 153 (344)
Q Consensus 74 ~~~q~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~~l~rG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (344)
+|+|++.... ....+|.+.++++++++++||++|||||+.+++++.++..+++|.+||.+++.+.+. ...
T Consensus 138 trlq~~~~~~-~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~---------~~~ 207 (297)
T 1okc_A 138 TRLAADVGKG-AAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP---------KNV 207 (297)
T ss_dssp HHHHHCCCSS-TTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG---------GCS
T ss_pred HHHhccccCC-CcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC---------CCc
Confidence 9999985322 123457899999999999999999999999999999999999999999999866421 123
Q ss_pred hhHHHHHHHHHHHHHHhhhcchHHHHHHHHhhccC----CcccCcHHHHHHHHHHhhCcccccccchhhhhhhhhhHHHH
Q 019197 154 DLFVHFVSGGLAGITAASVTYPLDLVRTRLAAQTN----VIYYRGICHALQTICRDEGIWGLYKGLGATLLGVGPSIAIS 229 (344)
Q Consensus 154 ~~~~~~~~g~~ag~~~~~v~~Pld~ik~r~q~~~~----~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~~~ 229 (344)
+....+++|++||++++++++|+|++|+|+|++.. ...|.++++++++|+++||++|||+|+.|++++. +..+++
T Consensus 208 ~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~ 286 (297)
T 1okc_A 208 HIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFV 286 (297)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceee
Confidence 46678899999999999999999999999998753 2368999999999999999999999999999996 578999
Q ss_pred HHHHHHHHHH
Q 019197 230 FSVYETLRSF 239 (344)
Q Consensus 230 ~~~y~~~~~~ 239 (344)
|.+||.+|+.
T Consensus 287 f~~ye~~k~~ 296 (297)
T 1okc_A 287 LVLYDEIKKF 296 (297)
T ss_dssp HHHHHTC---
T ss_pred ehHHHHHHhh
Confidence 9999998865
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=37.89 E-value=13 Score=24.90 Aligned_cols=38 Identities=13% Similarity=0.275 Sum_probs=31.5
Q ss_pred ccccccccchhhhhhccccchhhHHHHHHHHHHHHhhh
Q 019197 305 EGFRGLYRGILPEYYKVVPGVGICFMTYETLKMLLADI 342 (344)
Q Consensus 305 eG~~~lyrG~~~~~~~~~~~~~~~~~~ye~~~~~l~~~ 342 (344)
.|+-..+|-+..++++.+|..++.+.+|++..+....+
T Consensus 32 ~~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l 69 (81)
T 3tgu_G 32 DALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERL 69 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHH
Confidence 35666777788889999999999999999999876554
No 6
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=34.49 E-value=17 Score=30.27 Aligned_cols=36 Identities=17% Similarity=0.217 Sum_probs=27.0
Q ss_pred HHHHhccchHHHHHHHHHhccCCCCcccccCCHHHHHHHHHHhccc
Q 019197 262 IASSTATFPLDLVRRRKQLEGAGGRARVYTTGLFGTFQYIFRTEGF 307 (344)
Q Consensus 262 ~~~~~~~~Pld~vk~r~q~~~~~~~~~~~~~~~~~~~~~i~~~eG~ 307 (344)
-++++=.||||.+|-.++.. -+....+++.++.+|+
T Consensus 273 qLaTFdnypfdllRfqL~Sl----------istp~~I~e~i~K~GL 308 (368)
T 3vjj_A 273 QLATFDNYPFDLLRFQLSSL----------ISTPALIREKIAKEGL 308 (368)
T ss_dssp HHHHCTTCBHHHHHHHCSSC----------CCCCHHHHHHHHHSCS
T ss_pred eeecCCCCCHHHHHHHhhhh----------ccChHHHHHHHHhcCc
Confidence 46778889999998877654 3445778888888875
No 7
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=28.48 E-value=33 Score=23.58 Aligned_cols=38 Identities=11% Similarity=0.142 Sum_probs=32.8
Q ss_pred ccccccccchhhhhhccccchhhHHHHHHHHHHHHhhh
Q 019197 305 EGFRGLYRGILPEYYKVVPGVGICFMTYETLKMLLADI 342 (344)
Q Consensus 305 eG~~~lyrG~~~~~~~~~~~~~~~~~~ye~~~~~l~~~ 342 (344)
.|+...+|-+..+++..+|...+.+.+|++..+..+.+
T Consensus 42 ~~i~N~~RR~~~q~l~v~pPfv~~Y~i~~Wa~~~~e~l 79 (93)
T 3cx5_H 42 NAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYNEFL 79 (93)
T ss_dssp TTSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHhcceEEechHhHHHHHHHHHHHHHHHH
Confidence 47788888899999999999999999999998876544
No 8
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=24.55 E-value=25 Score=23.47 Aligned_cols=38 Identities=13% Similarity=0.175 Sum_probs=31.4
Q ss_pred ccccccccchhhhhhccccchhhHHHHHHHHHHHHhhh
Q 019197 305 EGFRGLYRGILPEYYKVVPGVGICFMTYETLKMLLADI 342 (344)
Q Consensus 305 eG~~~lyrG~~~~~~~~~~~~~~~~~~ye~~~~~l~~~ 342 (344)
.|+...+|-+.-+++..+|...+.+.+|++..+....+
T Consensus 32 ~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~~ 69 (81)
T 1pp9_G 32 KGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKS 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHHH
Confidence 35666777788888899999999999999999876544
No 9
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=13.15 E-value=28 Score=18.21 Aligned_cols=22 Identities=23% Similarity=0.224 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHhccchHHH
Q 019197 252 VSLACGSLSGIASSTATFPLDL 273 (344)
Q Consensus 252 ~~~~~~~~ag~~~~~~~~Pld~ 273 (344)
.++++..++|.+-++++|.|+.
T Consensus 5 v~iia~visGcivalF~hWL~~ 26 (30)
T 4b19_A 5 VHIIAPVISGCAIAFFSYWLSR 26 (30)
T ss_dssp TSSTTTTHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHh
Confidence 3445667888888888888763
No 10
>1y9i_A Low temperature requirement C protein; structural genomics, protein structure initiative, PSI; 1.80A {Listeria monocytogenes} SCOP: a.195.1.1
Probab=13.12 E-value=2.4e+02 Score=21.82 Aligned_cols=48 Identities=10% Similarity=-0.013 Sum_probs=29.7
Q ss_pred hhHhHHHhhHHHHHHHHhcCCcccccCCCCchhhHHHHHHHHHHHHHHhh
Q 019197 122 PYSSVNFYAYEHYKKLLHAIPVVESQGENMSSDLFVHFVSGGLAGITAAS 171 (344)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~ 171 (344)
....+.|..||..|......- +.....+....+-.+++|.+|+++..+
T Consensus 111 ~~gf~~Fr~fDi~KPgpI~~l--d~~~~gg~gimlDDivAgi~A~~~~~l 158 (178)
T 1y9i_A 111 SIGFTNYGYIDKVKPGILAKL--NEHDGIAVHTFLDDIVGAIAAAAASRL 158 (178)
T ss_dssp GGGHHHHHHHHHHCCTHHHHT--TCCCSSCCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHhh--hcccCCCCcchHHHHHHHHHHHHHHHH
Confidence 456778888888886543211 112234455677778888888876543
Done!