BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019198
(344 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BLW|A Chain A, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|C Chain C, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|E Chain E, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|G Chain G, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|I Chain I, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|K Chain K, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|M Chain M, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|O Chain O, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLX|A Chain A, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|C Chain C, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|E Chain E, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|G Chain G, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|I Chain I, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|K Chain K, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|M Chain M, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|O Chain O, Yeast Isocitrate Dehydrogenase (Apo Form)
Length = 349
Score = 287 bits (735), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 155/333 (46%), Positives = 211/333 (63%), Gaps = 17/333 (5%)
Query: 27 GSPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEV-HGDMKRVPQQVLDSIRKNK 85
G VTLIPGDG+G +T++V + EA + PI +E + D K + ++S+++NK
Sbjct: 15 GGRFTVTLIPGDGVGKEITDSVRTIFEAENIPIDWETINIKQTDHKEGVYEAVESLKRNK 74
Query: 86 VCLKGGLKTPVG-GGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIRENTEG 144
+ LKG TP G SLNV LRK+LD+YA + +L G+ TR ++D++VIRENTEG
Sbjct: 75 IGLKGLWHTPADQTGHGSLNVALRKQLDIYANVALFKSLKGVKTRIPDIDLIVIRENTEG 134
Query: 145 EYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLF 204
E+SGLEHE VPGVVESLKV+T+ +ERIA++AF++A RK VTAVHKANIMKL DGLF
Sbjct: 135 EFSGLEHESVPGVVESLKVMTRPKTERIARFAFDFAKKYNRKSVTAVHKANIMKLGDGLF 194
Query: 205 LESCREVATK-YPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGT 263
E+ K YP I + IIVDN MQ V+KP QFDV+VTP++YG ++ N A + GG
Sbjct: 195 RNIITEIGQKEYPDIDVSSIIVDNASMQAVAKPHQFDVLVTPSMYGTILGNIGAALIGGP 254
Query: 264 GVMPGAGNVGNEKVV-------------EQKKANPVALLLSSAMMLRHLQFPSFADRLET 310
G++ GA N G + V Q ANP A++LSS +ML HL +A R+
Sbjct: 255 GLVAGA-NFGRDYAVFEPGSRHVGLDIKGQNVANPTAMILSSTLMLNHLGLNEYATRISK 313
Query: 311 AVKRVISEEKYRTKDLGGGCTTQQIVDAVIANL 343
AV I+E K+ T+D+GG +T + +I L
Sbjct: 314 AVHETIAEGKHTTRDIGGSSSTTDFTNEIINKL 346
>pdb|3BLV|A Chain A, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|C Chain C, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|E Chain E, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|G Chain G, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
Length = 354
Score = 276 bits (705), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 152/333 (45%), Positives = 205/333 (61%), Gaps = 17/333 (5%)
Query: 27 GSPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEV-HGDMKRVPQQVLDSIRKNK 85
G VTLIPGDG+G +T++V + EA + PI +E + D K + ++S+++NK
Sbjct: 15 GGRFTVTLIPGDGVGKEITDSVRTIFEAENIPIDWETINIKQTDHKEGVYEAVESLKRNK 74
Query: 86 VCLKGGLKTPVG-GGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIRENTEG 144
+ LKG TP G SLNV LRK+LD+YA + +L G+ TR ++D++VIRENTEG
Sbjct: 75 IGLKGLWHTPADQTGHGSLNVALRKQLDIYANVALFKSLKGVKTRIPDIDLIVIRENTEG 134
Query: 145 EYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLF 204
E+SGLEHE VPGVVESLKV T+ +ERIA++AF++A RK VTAVHKANI KL DGLF
Sbjct: 135 EFSGLEHESVPGVVESLKVXTRPKTERIARFAFDFAKKYNRKSVTAVHKANIXKLGDGLF 194
Query: 205 LESCREVATK-YPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGT 263
E+ K YP I + IIVDN Q V+KP QFDV+VTP+ YG ++ N A + GG
Sbjct: 195 RNIITEIGQKEYPDIDVSSIIVDNASXQAVAKPHQFDVLVTPSXYGTILGNIGAALIGGP 254
Query: 264 GVMPGAGNVGNEKVV-------------EQKKANPVALLLSSAMMLRHLQFPSFADRLET 310
G++ GA N G + V Q ANP A +LSS + L HL +A R+
Sbjct: 255 GLVAGA-NFGRDYAVFEPGSRHVGLDIKGQNVANPTAXILSSTLXLNHLGLNEYATRISK 313
Query: 311 AVKRVISEEKYRTKDLGGGCTTQQIVDAVIANL 343
AV I+E K+ T+D+GG +T + +I L
Sbjct: 314 AVHETIAEGKHTTRDIGGSSSTTDFTNEIINKL 346
>pdb|3BLW|B Chain B, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|D Chain D, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|F Chain F, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|H Chain H, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|J Chain J, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|L Chain L, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|N Chain N, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|P Chain P, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLX|B Chain B, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|D Chain D, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|F Chain F, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|H Chain H, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|J Chain J, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|L Chain L, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|N Chain N, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|P Chain P, Yeast Isocitrate Dehydrogenase (Apo Form)
Length = 354
Score = 256 bits (653), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 143/345 (41%), Positives = 209/345 (60%), Gaps = 22/345 (6%)
Query: 19 TYMPRPGDGSPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVH----GDMKRVP 74
T P P G V+ I GDGIGP ++ +V+++ A + PI +E +V + +P
Sbjct: 12 TGKPNPSTGK-YTVSFIEGDGIGPEISKSVKKIFSAANVPIEWESCDVSPIFVNGLTTIP 70
Query: 75 QQVLDSIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQNVD 134
+ SI KN V LKG L TP+G G SLN+ LRK L+A + ++ G T ++NVD
Sbjct: 71 DPAVQSITKNLVALKGPLATPIGKGHRSLNLTLRKTFGLFANVRPAKSIEGFKTTYENVD 130
Query: 135 IVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKA 194
+V+IRENTEGEYSG+EH V PGVV+S+K+IT+ SER+ +YAFEYA R +V VHK+
Sbjct: 131 LVLIRENTEGEYSGIEHIVCPGVVQSIKLITRDASERVIRYAFEYARAIGRPRVIVVHKS 190
Query: 195 NIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFD--VMVTPNLYGNLV 252
I +LADGLF+ +E++ +YP + ++DN +++V+ P + V V PNLYG+++
Sbjct: 191 TIQRLADGLFVNVAKELSKEYPDLTLETELIDNSVLKVVTNPSAYTDAVSVCPNLYGDIL 250
Query: 253 SNTAAGIAGGT-GVMPGAGNVGNE------------KVVEQKKANPVALLLSSAMMLRHL 299
S+ +G++ G+ G+ P A N+G++ + Q KANP ALLLSS MML H+
Sbjct: 251 SDLNSGLSAGSLGLTPSA-NIGHKISIFEAVHGSAPDIAGQDKANPTALLLSSVMMLNHM 309
Query: 300 QFPSFADRLETAVKRVI-SEEKYRTKDLGGGCTTQQIVDAVIANL 343
+ AD+++ AV I S + RT DL G TT +AVI L
Sbjct: 310 GLTNHADQIQNAVLSTIASGPENRTGDLAGTATTSSFTEAVIKRL 354
>pdb|2D1C|A Chain A, Crystal Structure Of Tt0538 Protein From Thermus
Thermophilus Hb8
pdb|2D1C|B Chain B, Crystal Structure Of Tt0538 Protein From Thermus
Thermophilus Hb8
Length = 496
Score = 242 bits (618), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 146/355 (41%), Positives = 208/355 (58%), Gaps = 25/355 (7%)
Query: 12 LIQTRSVTYMPRPGDGSPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMK 71
LI T + M DG + +T+IPGDGIGP A +V+EA AP+ +E E +
Sbjct: 3 LITTETGKKMHVLEDGR-KLITVIPGDGIGPECVEATLKVLEAAKAPLAYEVREAGASVF 61
Query: 72 R------VPQQVLDSIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELDLYAALVNCFNLPG 125
R VPQ+ ++SIRK +V LKG L+TPVG G S NV LRK + YA + P
Sbjct: 62 RRGIASGVPQETIESIRKTRVVLKGPLETPVGYGEKSANVTLRKLFETYANVRPVREFPN 121
Query: 126 LPTRH--QNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLN 183
+PT + + +D+VV+REN E Y+G+EH P V ++LK+I+ SE+I ++AFE A
Sbjct: 122 VPTPYAGRGIDLVVVRENVEDLYAGIEHMQTPSVAQTLKLISWKGSEKIVRFAFELARAE 181
Query: 184 YRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMV 243
RKKV K+NIMKLA+G + +VA +YP I+ IIVDN QLV +PEQF+V+V
Sbjct: 182 GRKKVHCATKSNIMKLAEGTLKRAFEQVAQEYPDIEAVHIIVDNAAHQLVKRPEQFEVIV 241
Query: 244 TPNLYGNLVSNTAAGIAGGTGVMPGAGNVGNE------------KVVEQKKANPVALLLS 291
T N+ G+++S+ +G+ GG G P A N+GNE K + NP A+LLS
Sbjct: 242 TTNMNGDILSDLTSGLIGGLGFAPSA-NIGNEVAIFEAVHGSAPKYAGKNVINPTAVLLS 300
Query: 292 SAMMLRHLQFPSFADRLETAVKRVISEEKYRTKDLGG---GCTTQQIVDAVIANL 343
+ MMLR+L+ + AD +E A+ + E + T D+ G G T + +A+I NL
Sbjct: 301 AVMMLRYLEEFATADLIENALLYTLEEGRVLTGDVVGYDRGAKTTEYTEAIIQNL 355
>pdb|3BLV|B Chain B, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|D Chain D, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|F Chain F, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|H Chain H, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
Length = 354
Score = 237 bits (604), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 141/345 (40%), Positives = 206/345 (59%), Gaps = 22/345 (6%)
Query: 19 TYMPRPGDGSPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVH----GDMKRVP 74
T P P G V+ I GDGIGP ++ +V+++ A + PI +E +V + +P
Sbjct: 12 TGKPNPSTGK-YTVSFIEGDGIGPEISKSVKKIFSAANVPIEWESCDVSPIFVNGLTTIP 70
Query: 75 QQVLDSIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQNVD 134
+ SI KN V LKG L TP+G G SLN+ LRK L+A + ++ G T ++NVD
Sbjct: 71 DPAVQSITKNLVALKGPLATPIGKGHRSLNLTLRKTFGLFANVRPAKSIEGFKTTYENVD 130
Query: 135 IVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKA 194
+V+IRENTEGEYSG+EH V PGVV+S+K+IT+ SER+ +YAFEYA R +V VHK+
Sbjct: 131 LVLIRENTEGEYSGIEHIVCPGVVQSIKLITRDASERVIRYAFEYARAIGRPRVIVVHKS 190
Query: 195 NIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFD--VMVTPNLYGNLV 252
I +LADGLF+ +E++ +YP + ++DN +++V+ P + V V PNLYG+++
Sbjct: 191 TIQRLADGLFVNVAKELSKEYPDLTLETELIDNSVLKVVTNPSAYTDAVSVCPNLYGDIL 250
Query: 253 SNTAAGIAGGT-GVMPGAGNVGNE------------KVVEQKKANPVALLLSSAMMLRHL 299
S+ +G++ G+ G+ P A N+G++ + Q KANP ALLLSS L H
Sbjct: 251 SDLNSGLSAGSLGLTPSA-NIGHKISIFEAVHGSAPDIAGQDKANPTALLLSSVXXLNHX 309
Query: 300 QFPSFADRLETAVKRVI-SEEKYRTKDLGGGCTTQQIVDAVIANL 343
+ AD+++ AV I S + RT DL G TT +AVI L
Sbjct: 310 GLTNHADQIQNAVLSTIASGPENRTGDLAGTATTSSFTEAVIKRL 354
>pdb|1WPW|A Chain A, Crystal Structure Of Ipmdh From Sulfolobus Tokodaii
pdb|1WPW|B Chain B, Crystal Structure Of Ipmdh From Sulfolobus Tokodaii
Length = 336
Score = 212 bits (539), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 131/341 (38%), Positives = 191/341 (56%), Gaps = 38/341 (11%)
Query: 32 VTLIPGDGIGPLVTNAVEQVM----EAMHAPIYFEKYEVHGDM------KRVPQQVLDSI 81
V LI GDGIGP + + ++++ E PI + + E GD + +P+ L I
Sbjct: 4 VALIQGDGIGPEIVSKSKRILAKINELYSLPIEYIEVEA-GDRALARYGEALPKDSLKII 62
Query: 82 RKNKVCLKGGLKTPVGGGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIREN 141
K + LKG PVG + + V+LR+ D+YA + ++PG+ T++ NVDI+++REN
Sbjct: 63 DKADIILKG----PVGESAADVVVKLRQIYDMYANIRPAKSIPGIDTKYGNVDILIVREN 118
Query: 142 TEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLAD 201
TE Y G EH V GV +K+IT+F SERIAK +A L RKKVT VHKAN+M++ D
Sbjct: 119 TEDLYKGFEHIVSDGVAVGMKIITRFASERIAKVGLNFA-LRRRKKVTCVHKANVMRITD 177
Query: 202 GLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAG 261
GLF E+CR V ++Y+E+ VD LV P+ FDV+VT N+YG+++S+ A+ IAG
Sbjct: 178 GLFAEACRSVLKG--KVEYSEMYVDAAAANLVRNPQMFDVIVTENVYGDILSDEASQIAG 235
Query: 262 GTGVMPGAGNVGNEK------------VVEQKKANPVALLLSSAMMLRHLQFPSFADR-- 307
G+ P A N+G++K + + NP A LLS +MM + S DR
Sbjct: 236 SLGIAPSA-NIGDKKALFEPVHGAAFDIAGKNIGNPTAFLLSVSMMYERMYELSNDDRYI 294
Query: 308 -----LETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANL 343
LE A+ V E K T D+GG TT +++ + L
Sbjct: 295 KASRALENAIYLVYKERKALTPDVGGNATTDDLINEIYNKL 335
>pdb|3ASJ|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
pdb|3ASJ|B Chain B, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
pdb|3ASJ|C Chain C, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
pdb|3ASJ|D Chain D, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
Length = 334
Score = 197 bits (501), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 131/334 (39%), Positives = 184/334 (55%), Gaps = 29/334 (8%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAPIYF-------EKYEVHGDMKRVPQQVLDSIRKN 84
+ LI GDGIG V A +V+EA P+ F E +E G VP++ ++ I
Sbjct: 5 ICLIEGDGIGHEVIPAARRVLEATGLPLEFVEAEAGWETFERRG--TSVPEETVEKILSC 62
Query: 85 KVCLKGGLKTP---VGGGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIREN 141
L G +P V G ++ LR+ LDLYA + + P +P VD+V++REN
Sbjct: 63 HATLFGAATSPTRKVPGFFGAIR-YLRRRLDLYANVRPAKSRP-VPGSRPGVDLVIVREN 120
Query: 142 TEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLAD 201
TEG Y E + V + VI+K SERI + A A RK + HKAN++ L
Sbjct: 121 TEGLYVEQERRYL-DVAIADAVISKKASERIGRAALRIAEGRPRKTLHIAHKANVLPLTQ 179
Query: 202 GLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAG 261
GLFL++ +EVA +P + +IIVDNC MQLV +PE+FDV+VT NL G+++S+ AAG+ G
Sbjct: 180 GLFLDTVKEVAKDFPLVNVQDIIVDNCAMQLVMRPERFDVIVTTNLLGDILSDLAAGLVG 239
Query: 262 GTGVMPGAGNVGNEKVVEQKK------------ANPVALLLSSAMMLRHLQFPSFADRLE 309
G G+ P +GN+G+ V + ANP A +LS+AMML +L A R+E
Sbjct: 240 GLGLAP-SGNIGDTTAVFEPVHGSAPDIAGKGIANPTAAILSAAMMLDYLGEKEAAKRVE 298
Query: 310 TAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANL 343
AV V+ E RT DLGG TT+ +AV+ L
Sbjct: 299 KAVDLVL-ERGPRTPDLGGDATTEAFTEAVVEAL 331
>pdb|1X0L|A Chain A, Crystal Structure Of Tetrameric Homoisocitrate
Dehydrogenase From An Extreme Thermophile, Thermus
Thermophilus
pdb|1X0L|B Chain B, Crystal Structure Of Tetrameric Homoisocitrate
Dehydrogenase From An Extreme Thermophile, Thermus
Thermophilus
Length = 333
Score = 197 bits (500), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 131/334 (39%), Positives = 184/334 (55%), Gaps = 29/334 (8%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAPIYF-------EKYEVHGDMKRVPQQVLDSIRKN 84
+ LI GDGIG V A +V+EA P+ F E +E G VP++ ++ I
Sbjct: 4 ICLIEGDGIGHEVIPAARRVLEATGLPLEFVEAEAGWETFERRG--TSVPEETVEKILSC 61
Query: 85 KVCLKGGLKTP---VGGGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIREN 141
L G +P V G ++ LR+ LDLYA + + P +P VD+V++REN
Sbjct: 62 HATLFGAATSPTRKVPGFFGAIR-YLRRRLDLYANVRPAKSRP-VPGSRPGVDLVIVREN 119
Query: 142 TEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLAD 201
TEG Y E + V + VI+K SERI + A A RK + HKAN++ L
Sbjct: 120 TEGLYVEQERRYL-DVAIADAVISKKASERIGRAALRIAEGRPRKTLHIAHKANVLPLTQ 178
Query: 202 GLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAG 261
GLFL++ +EVA +P + +IIVDNC MQLV +PE+FDV+VT NL G+++S+ AAG+ G
Sbjct: 179 GLFLDTVKEVAKDFPLVNVQDIIVDNCAMQLVMRPERFDVIVTTNLLGDILSDLAAGLVG 238
Query: 262 GTGVMPGAGNVGNEKVVEQKK------------ANPVALLLSSAMMLRHLQFPSFADRLE 309
G G+ P +GN+G+ V + ANP A +LS+AMML +L A R+E
Sbjct: 239 GLGLAP-SGNIGDTTAVFEPVHGSAPDIAGKGIANPTAAILSAAMMLDYLGEKEAAKRVE 297
Query: 310 TAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANL 343
AV V+ E RT DLGG TT+ +AV+ L
Sbjct: 298 KAVDLVL-ERGPRTPDLGGDATTEAFTEAVVEAL 330
>pdb|3AH3|A Chain A, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|B Chain B, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|C Chain C, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|D Chain D, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
Length = 334
Score = 187 bits (476), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 127/333 (38%), Positives = 178/333 (53%), Gaps = 27/333 (8%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAPIYF-------EKYEVHGDMKRVPQQVLDSIRKN 84
+ LI GDGIG V A +V+EA P+ F E +E G VP++ + I
Sbjct: 5 ICLIEGDGIGYEVIPAARRVLEATGLPLEFVEAEAGWETFERRG--TSVPEETVVKILSC 62
Query: 85 KVCLKGGLKTPVGG--GVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIRENT 142
L G P G + LR+ LDLYA + + P +P VD+V++RENT
Sbjct: 63 HATLFGAATIPTRKVPGFFGAIMALRRRLDLYANVRPAKSRP-VPGSRPGVDLVIVRENT 121
Query: 143 EGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADG 202
EG Y E + V + VI+K SERI + A A RK + HKAN++ L G
Sbjct: 122 EGLYVEQERRYL-DVAIADAVISKKASERIGRAALRIAEGRPRKTLHIAHKANVLPLTQG 180
Query: 203 LFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGG 262
LFL++ +EVA +P + +IIVDNC QLV +PE++DV+VT NL G+++S+ AAG+ GG
Sbjct: 181 LFLDTVKEVAKDFPLVNVQDIIVDNCATQLVMRPERYDVIVTTNLLGDILSDLAAGLMGG 240
Query: 263 TGVMPGAGNVGNEKVVEQKK------------ANPVALLLSSAMMLRHLQFPSFADRLET 310
G+ P +GN+G+ V + ANP A +LS+AMML +L A R+E
Sbjct: 241 LGLAP-SGNIGDTTAVFEPVHGSAPDIAGKGIANPTAAILSAAMMLDYLGEKEAAKRVEK 299
Query: 311 AVKRVISEEKYRTKDLGGGCTTQQIVDAVIANL 343
AV V+ E T DLGG TT+ +AV+ L
Sbjct: 300 AVDLVL-ERGPMTPDLGGDATTEAFTEAVVEAL 331
>pdb|3TY3|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe Bound To Glycyl-Glycyl-Glycine
pdb|3TY3|B Chain B, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe Bound To Glycyl-Glycyl-Glycine
pdb|3TY4|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe
pdb|3TY4|B Chain B, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe
Length = 366
Score = 172 bits (435), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 127/353 (35%), Positives = 190/353 (53%), Gaps = 46/353 (13%)
Query: 34 LIPGDGIGPLVTNAVEQVMEAMHAP--IYFEKYEVHGDM-------KRVPQQVLDSIRKN 84
LIP DGIG V A ++ME + A + F+ ++ K +P++ ++ ++
Sbjct: 15 LIPADGIGKEVVPAARRLMENLPAKHKLKFDFIDLDAGWGTFERTGKALPERTVERLKTE 74
Query: 85 -KVCLKGGLKTPVG--GGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIREN 141
L G +++P G SS V LRK++ LYA + +L G + + VD+V++REN
Sbjct: 75 CNAALFGAVQSPTHKVAGYSSPIVALRKKMGLYANVRPVKSLDG--AKGKPVDLVIVREN 132
Query: 142 TEGEYSGLEHEV--VPG--VVESLKVITKFCSERIAKYAFEYA-----------YLNYRK 186
TE Y E V PG V E+++ I++ S +I K AFE A Y ++K
Sbjct: 133 TECLYVKEERMVQNTPGKRVAEAIRRISEEASTKIGKMAFEIAKSRQKIRESGTYSIHKK 192
Query: 187 K-VTAVHKANIMKLADGLFLESCREVAT---KYPSIKYNEIIVDNCCMQLVSKPEQFDVM 242
VT +HK+N+M + DGLF ESCR + Y SI +E IVD+ +L +PE FDV+
Sbjct: 193 PLVTIIHKSNVMSVTDGLFRESCRHAQSLDPSYASINVDEQIVDSMVYRLFREPECFDVV 252
Query: 243 VTPNLYGNLVSNTAAGIAGGTGVMPGAGNVGNEKVVEQKK------------ANPVALLL 290
V PNLYG+++S+ AA + G G++P A NVG+ V+ + ANPVA
Sbjct: 253 VAPNLYGDILSDGAASLIGSLGLVPSA-NVGDNFVMSEPVHGSAPDIAGRGIANPVATFR 311
Query: 291 SSAMMLRHLQFPSFADRLETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANL 343
S A+ML + A + TAV +V++E K T DLGG T +I DAV+AN+
Sbjct: 312 SVALMLEFMGHQDAAADIYTAVDKVLTEGKVLTPDLGGKSGTNEITDAVLANI 364
>pdb|2DHT|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain7
pdb|2DHT|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain7
pdb|2E0C|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain7 At 2.0 A Resolution
pdb|2E0C|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain7 At 2.0 A Resolution
pdb|2E5M|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain 7
pdb|2E5M|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain 7
Length = 409
Score = 163 bits (413), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 115/383 (30%), Positives = 188/383 (49%), Gaps = 72/383 (18%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAPIY-----FEKYEVHGDMK-------RVPQQVLD 79
+ I GDGIGP +TNA +V+ Y + EV+ K R P++ +
Sbjct: 27 ILYIEGDGIGPEITNAAIKVINKAVERAYGSSREIKWLEVYAGEKAEKLVNDRFPKETQE 86
Query: 80 SIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELDLYAALVNCFNLPGL--PTRH-QNVDIV 136
+ K +V LKG L+TP+G G S+NV +R LDLYA + + GL P +H + VD++
Sbjct: 87 MLLKYRVVLKGPLETPIGKGWKSVNVAIRLMLDLYANIRPVKYIEGLESPLKHPEKVDMI 146
Query: 137 VIRENTEGEYSGLEH--------------------EVVPGVVESLKVITKFCSERIAKYA 176
+ RENT+ Y G+E+ E+ +KV++K+ ++RI + A
Sbjct: 147 IFRENTDDLYRGIEYPFNSEEAKKIRDFLRKELKVEIEDDTGIGIKVMSKYKTQRITRLA 206
Query: 177 FEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATK------------------YPSI 218
+YA + RKKVT +HK N+MK +G F E EVA K I
Sbjct: 207 IQYAIEHKRKKVTIMHKGNVMKYTEGAFREWAYEVALKEYRDFIVTEEEINQGKPDQGKI 266
Query: 219 KYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGNVGNE--- 275
N+ I DN Q++ +PE++D+++ PN+ G+ +S+ A + G G++ GA N+G+E
Sbjct: 267 ILNDRIADNMFQQIIIRPEEYDIILAPNVNGDYISDAAGALIGNIGMLGGA-NIGDEGGM 325
Query: 276 ---------KVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEEKYRTKDL 326
K + ANP ++ + +MLR + + AD +E A+ I ++K T+D+
Sbjct: 326 FEAIHGTAPKYAGKNVANPTGIIKAGELMLRWMGWNEAADLIEKAINMAIRDKKV-TQDI 384
Query: 327 G-----GGCTTQQIVDAVIANLD 344
T++ D +I +D
Sbjct: 385 ARFMGVKALGTKEYADELIKIMD 407
>pdb|2IV0|A Chain A, Thermal Stability Of Isocitrate Dehydrogenase From
Archaeoglobus Fulgidus Studied By Crystal Structure
Analysis And Engineering Of Chimers
pdb|2IV0|B Chain B, Thermal Stability Of Isocitrate Dehydrogenase From
Archaeoglobus Fulgidus Studied By Crystal Structure
Analysis And Engineering Of Chimers
Length = 412
Score = 162 bits (410), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 122/380 (32%), Positives = 191/380 (50%), Gaps = 78/380 (20%)
Query: 37 GDGIGPLVTNAVEQVMEAMHAPI-----YF------EKYEVHGDMKRVPQQVLDSIRKNK 85
GDGIG V A +V++A I +F + Y+++G+ +P L++I++ +
Sbjct: 35 GDGIGKDVVPAAIRVLDAAADKIGKEVVWFQVYAGEDAYKLYGNY--LPDDTLNAIKEFR 92
Query: 86 VCLKGGLKTPVGGGVSSLNVQLRKELDLYAALVNCFNLPGLPT--RH-QNVDIVVIRENT 142
V LKG L TPVGGG SLNV +R+ LDLYA + + L G+P+ +H + V+ V+ RENT
Sbjct: 93 VALKGPLTTPVGGGYRSLNVTIRQVLDLYANVRPVYYLKGVPSPIKHPEKVNFVIFRENT 152
Query: 143 EGEYSGLEHEVVPGVVESLKV----------------------ITKFCSERIAKYAFEYA 180
E Y+G+E G E+LK+ I++F ++R+ + A YA
Sbjct: 153 EDVYAGIEWP--RGSEEALKLIRFLKNEFGVTIREDSGIGIKPISEFATKRLVRMAIRYA 210
Query: 181 YLNYRKKVTAVHKANIMKLADGLFLESCREVAT-------------------KYPS--IK 219
N RK VT VHK NIMK +G F + EVA K P I
Sbjct: 211 IENNRKSVTLVHKGNIMKYTEGAFRDWGYEVAKQEFGEYCITEDELWDKYGGKQPEGKIV 270
Query: 220 YNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGNVGN----- 274
+ I DN Q++++ +++DV+ PNL G+ +S+ AA + GG G+ PG+ N+G+
Sbjct: 271 VKDRIADNMFQQILTRTDEYDVIALPNLNGDYLSDAAAALIGGLGIAPGS-NIGDGIGVF 329
Query: 275 -------EKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEE--KYRTKD 325
K Q K NP A +L+ A+M ++ + ++ ++ AV+ IS Y
Sbjct: 330 EPVHGSAPKYAGQNKVNPTAEILTGALMFEYIGWKDASEMIKKAVEMTISSGIVTYDIHR 389
Query: 326 LGGGCT--TQQIVDAVIANL 343
GG T++ +AV+ NL
Sbjct: 390 HMGGTKVGTREFAEAVVENL 409
>pdb|1ISO|A Chain A, Isocitrate Dehydrogenase: Structure Of An Engineered
Nadp+--> Nad+ Specificity-Reversal Mutant
Length = 416
Score = 158 bits (399), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 118/367 (32%), Positives = 179/367 (48%), Gaps = 74/367 (20%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAPIY--------FEKY------EVHGDMKRVPQQV 77
+ I GDGIG VT A+ +V++A Y E Y +V+G +P +
Sbjct: 29 IPYIEGDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAET 88
Query: 78 LDSIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELDLYAAL--VNCFNLPGLPTRHQNV-D 134
LD IR+ +V +KG L TPVGGG+ SLNV LR+ELDLY L V + P +H + D
Sbjct: 89 LDLIREYRVAIKGPLTTPVGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTD 148
Query: 135 IVVIRENTEGEYSGLEHEVVPGVVE-----------------------SLKVITKFCSER 171
+V+ REN+E Y+G+E + E +K +++ ++R
Sbjct: 149 MVIFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPMSEEGTKR 208
Query: 172 IAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVA----------------TKY 215
+ + A EYA N R VT VHK NIMK +G F + ++A K
Sbjct: 209 LVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKN 268
Query: 216 PS----IKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGN 271
P+ I ++I D Q++ +P ++DV+ NL G+ +S+ A GG G+ PGA N
Sbjct: 269 PNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGA-N 327
Query: 272 VGNE------------KVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEE 319
+G+E + Q KANP +++LS+ MMLRH+ + AD + ++ I+
Sbjct: 328 IGDEYALFEATHGTAPDIAGQDKANPGSIILSAEMMLRHMGWTEAADLIVKGMEGAIN-A 386
Query: 320 KYRTKDL 326
K TKD
Sbjct: 387 KTVTKDF 393
>pdb|1P8F|A Chain A, A Four Location Model To Explain The Stereospecificity Of
Proteins.
pdb|1PB1|A Chain A, A Four Location Model To Explain The Stereospecificity Of
Proteins.
pdb|1PB3|A Chain A, Sites Of Binding And Orientation In A Four Location Model
For Protein Stereospecificity.
pdb|1AI2|A Chain A, Isocitrate Dehydrogenase Complexed With Isocitrate, Nadp+,
And Calcium (flash-cooled)
pdb|1AI3|A Chain A, Orbital Steering In The Catalytic Power Of Enzymes: Small
Structural Changes With Large Catalytic Consequences
pdb|1IKA|A Chain A, Structure Of Isocitrate Dehydrogenase With
Alpha-Ketoglutarate At 2.7 Angstroms Resolution:
Conformational Changes Induced By Decarboxylation Of
Isocitrate
pdb|1SJS|A Chain A, Access To Phosphorylation In Isocitrate Dehydrogenase May
Occur By Domain Shifting
pdb|3ICD|A Chain A, Structure Of A Bacterial Enzyme Regulated By
Phosphorylation, Isocitrate Dehydrogenase
pdb|5ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
pdb|9ICD|A Chain A, Catalytic Mechanism Of Nadp+-Dependent Isocitrate
Dehydrogenase: Implications From The Structures Of
Magnesium-Isocitrate And Nadp+ Complexes
pdb|3LCB|C Chain C, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE In Complex With Its Substrate,
Isocitrate Dehydrogenase, From Escherichia Coli.
pdb|3LCB|D Chain D, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE In Complex With Its Substrate,
Isocitrate Dehydrogenase, From Escherichia Coli.
pdb|4AJ3|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase In
Complex With Isocitrate, Calcium(Ii) And Nadp - The
Pseudo-Michaelis Complex
pdb|4AJA|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase In
Complex With Isocitrate, Calcium(Ii) And Thionadp
Length = 416
Score = 157 bits (397), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 126/389 (32%), Positives = 188/389 (48%), Gaps = 78/389 (20%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAPIY--------FEKY------EVHGDMKRVPQQV 77
+ I GDGIG VT A+ +V++A Y E Y +V+G +P +
Sbjct: 29 IPYIEGDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAET 88
Query: 78 LDSIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELDLYAAL--VNCFNLPGLPTRHQNV-D 134
LD IR+ +V +KG L TPVGGG+ SLNV LR+ELDLY L V + P +H + D
Sbjct: 89 LDLIREYRVAIKGPLTTPVGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTD 148
Query: 135 IVVIRENTEGEYSGLE--------HEVVPGVVESLKVI-----------TKFCSE----R 171
+V+ REN+E Y+G+E +V+ + E + V K CSE R
Sbjct: 149 MVIFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKR 208
Query: 172 IAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVA----------------TKY 215
+ + A EYA N R VT VHK NIMK +G F + ++A K
Sbjct: 209 LVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKN 268
Query: 216 PS----IKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGN 271
P+ I ++I D Q++ +P ++DV+ NL G+ +S+ A GG G+ PGA N
Sbjct: 269 PNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGA-N 327
Query: 272 VGNE------------KVVEQKKANPVALLLSSAMMLRHLQFPSFAD----RLETAVK-R 314
+G+E K Q K NP +++LS+ MMLRH+ + AD +E A+ +
Sbjct: 328 IGDECALFEATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAINAK 387
Query: 315 VISEEKYRTKDLGGGCTTQQIVDAVIANL 343
++ + R D + DA+I N+
Sbjct: 388 TVTYDFERLMDGAKLLKCSEFGDAIIENM 416
>pdb|1BL5|A Chain A, Isocitrate Dehydrogenase From E. Coli Single Turnover Laue
Structure Of Rate-limited Product Complex, 10 Msec Time
Resolution
Length = 414
Score = 157 bits (397), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 126/389 (32%), Positives = 188/389 (48%), Gaps = 78/389 (20%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAPIY--------FEKY------EVHGDMKRVPQQV 77
+ I GDGIG VT A+ +V++A Y E Y +V+G +P +
Sbjct: 27 IPYIEGDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAET 86
Query: 78 LDSIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELDLYAAL--VNCFNLPGLPTRHQNV-D 134
LD IR+ +V +KG L TPVGGG+ SLNV LR+ELDLY L V + P +H + D
Sbjct: 87 LDLIREYRVAIKGPLTTPVGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTD 146
Query: 135 IVVIRENTEGEYSGLE--------HEVVPGVVESLKVI-----------TKFCSE----R 171
+V+ REN+E Y+G+E +V+ + E + V K CSE R
Sbjct: 147 MVIFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKR 206
Query: 172 IAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVA----------------TKY 215
+ + A EYA N R VT VHK NIMK +G F + ++A K
Sbjct: 207 LVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKN 266
Query: 216 PS----IKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGN 271
P+ I ++I D Q++ +P ++DV+ NL G+ +S+ A GG G+ PGA N
Sbjct: 267 PNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGA-N 325
Query: 272 VGNE------------KVVEQKKANPVALLLSSAMMLRHLQFPSFAD----RLETAVK-R 314
+G+E K Q K NP +++LS+ MMLRH+ + AD +E A+ +
Sbjct: 326 IGDECALFEATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAINAK 385
Query: 315 VISEEKYRTKDLGGGCTTQQIVDAVIANL 343
++ + R D + DA+I N+
Sbjct: 386 TVTYDFERLMDGAKLLKCSEFGDAIIENM 414
>pdb|1IDD|A Chain A, Isocitrate Dehydrogenase Y160f Mutant Apo Enzyme
pdb|1IDE|A Chain A, Isocitrate Dehydrogenase Y160f Mutant Steady-State
Intermediate Complex (Laue Determination)
Length = 416
Score = 155 bits (393), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 125/389 (32%), Positives = 188/389 (48%), Gaps = 78/389 (20%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAPIY--------FEKY------EVHGDMKRVPQQV 77
+ I GDGIG VT A+ +V++A Y E Y +V+G +P +
Sbjct: 29 IPYIEGDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAET 88
Query: 78 LDSIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELDLYAAL--VNCFNLPGLPTRHQNV-D 134
LD IR+ +V +KG L TPVGGG+ SLNV LR+ELDLY L V + P +H + D
Sbjct: 89 LDLIREYRVAIKGPLTTPVGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTD 148
Query: 135 IVVIRENTEGEYSGLE--------HEVVPGVVESLKVI-----------TKFCSE----R 171
+V+ REN+E ++G+E +V+ + E + V K CSE R
Sbjct: 149 MVIFRENSEDIFAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKR 208
Query: 172 IAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVA----------------TKY 215
+ + A EYA N R VT VHK NIMK +G F + ++A K
Sbjct: 209 LVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKN 268
Query: 216 PS----IKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGN 271
P+ I ++I D Q++ +P ++DV+ NL G+ +S+ A GG G+ PGA N
Sbjct: 269 PNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGA-N 327
Query: 272 VGNE------------KVVEQKKANPVALLLSSAMMLRHLQFPSFAD----RLETAVK-R 314
+G+E K Q K NP +++LS+ MMLRH+ + AD +E A+ +
Sbjct: 328 IGDECALFEATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAINAK 387
Query: 315 VISEEKYRTKDLGGGCTTQQIVDAVIANL 343
++ + R D + DA+I N+
Sbjct: 388 TVTYDFERLMDGAKLLKCSEFGDAIIENM 416
>pdb|6ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
Length = 416
Score = 155 bits (392), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 125/389 (32%), Positives = 187/389 (48%), Gaps = 78/389 (20%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAPIY--------FEKY------EVHGDMKRVPQQV 77
+ I GDGIG VT A+ +V++A Y E Y +V+G +P +
Sbjct: 29 IPYIEGDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAET 88
Query: 78 LDSIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELDLYAAL--VNCFNLPGLPTRHQNV-D 134
LD IR+ +V +KG L TPVGGG+ LNV LR+ELDLY L V + P +H + D
Sbjct: 89 LDLIREYRVAIKGPLTTPVGGGIRDLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTD 148
Query: 135 IVVIRENTEGEYSGLE--------HEVVPGVVESLKVI-----------TKFCSE----R 171
+V+ REN+E Y+G+E +V+ + E + V K CSE R
Sbjct: 149 MVIFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKR 208
Query: 172 IAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVA----------------TKY 215
+ + A EYA N R VT VHK NIMK +G F + ++A K
Sbjct: 209 LVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKN 268
Query: 216 PS----IKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGN 271
P+ I ++I D Q++ +P ++DV+ NL G+ +S+ A GG G+ PGA N
Sbjct: 269 PNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGA-N 327
Query: 272 VGNE------------KVVEQKKANPVALLLSSAMMLRHLQFPSFAD----RLETAVK-R 314
+G+E K Q K NP +++LS+ MMLRH+ + AD +E A+ +
Sbjct: 328 IGDECALFEATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAINAK 387
Query: 315 VISEEKYRTKDLGGGCTTQQIVDAVIANL 343
++ + R D + DA+I N+
Sbjct: 388 TVTYDFERLMDGAKLLKCSEFGDAIIENM 416
>pdb|1HJ6|A Chain A, Isocitrate Dehydrogenase S113e Mutant Complexed With
Isopropylmalate, Nadp+ And Magnesium (Flash-Cooled)
pdb|7ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
pdb|8ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
Length = 416
Score = 155 bits (392), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 125/389 (32%), Positives = 187/389 (48%), Gaps = 78/389 (20%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAPIY--------FEKY------EVHGDMKRVPQQV 77
+ I GDGIG VT A+ +V++A Y E Y +V+G +P +
Sbjct: 29 IPYIEGDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAET 88
Query: 78 LDSIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELDLYAAL--VNCFNLPGLPTRHQNV-D 134
LD IR+ +V +KG L TPVGGG+ LNV LR+ELDLY L V + P +H + D
Sbjct: 89 LDLIREYRVAIKGPLTTPVGGGIRELNVALRQELDLYICLRPVRYYQGTPSPVKHPELTD 148
Query: 135 IVVIRENTEGEYSGLE--------HEVVPGVVESLKVI-----------TKFCSE----R 171
+V+ REN+E Y+G+E +V+ + E + V K CSE R
Sbjct: 149 MVIFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKR 208
Query: 172 IAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVA----------------TKY 215
+ + A EYA N R VT VHK NIMK +G F + ++A K
Sbjct: 209 LVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKN 268
Query: 216 PS----IKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGN 271
P+ I ++I D Q++ +P ++DV+ NL G+ +S+ A GG G+ PGA N
Sbjct: 269 PNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGA-N 327
Query: 272 VGNE------------KVVEQKKANPVALLLSSAMMLRHLQFPSFAD----RLETAVK-R 314
+G+E K Q K NP +++LS+ MMLRH+ + AD +E A+ +
Sbjct: 328 IGDECALFEATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAINAK 387
Query: 315 VISEEKYRTKDLGGGCTTQQIVDAVIANL 343
++ + R D + DA+I N+
Sbjct: 388 TVTYDFERLMDGAKLLKCSEFGDAIIENM 416
>pdb|1CW7|A Chain A, Low Temperature Structure Of Wild-Type Idh Complexed With
Mg- Isocitrate
Length = 416
Score = 155 bits (391), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 125/389 (32%), Positives = 187/389 (48%), Gaps = 78/389 (20%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAPIY--------FEKY------EVHGDMKRVPQQV 77
+ I GDGIG VT A+ +V++A Y E Y +V+G +P +
Sbjct: 29 IPYIEGDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAET 88
Query: 78 LDSIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELDLYAAL--VNCFNLPGLPTRHQNV-D 134
LD IR+ +V +KG L TPVGGG+ SLNV LR+ELDLY L V + P +H + D
Sbjct: 89 LDLIREYRVAIKGPLTTPVGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTD 148
Query: 135 IVVIRENTEGEYSGLE--------HEVVPGVVESLKVI-----------TKFCSE----R 171
+V+ REN+E Y+G+E +V+ + E + V K CSE R
Sbjct: 149 MVIFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKR 208
Query: 172 IAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVA----------------TKY 215
+ + A EYA N R VT VHK NIMK +G F + ++A K
Sbjct: 209 LVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKN 268
Query: 216 PS----IKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGN 271
P+ I ++I D Q++ +P ++DV+ NL G+ +S+ A GG G+ PGA N
Sbjct: 269 PNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGA-N 327
Query: 272 VGNE------------KVVEQKKANPVALLLSSAMMLRHLQFPSFAD----RLETAVK-R 314
+G+E Q K NP +++LS+ MMLRH+ + AD +E A+ +
Sbjct: 328 IGDECALFEATHGTAPAYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAINAK 387
Query: 315 VISEEKYRTKDLGGGCTTQQIVDAVIANL 343
++ + R D + DA+I N+
Sbjct: 388 TVTYDFERLMDGAKLLKCSEFGDAIIENM 416
>pdb|4ICD|A Chain A, Regulation Of Isocitrate Dehydrogenase By Phosphorylation
Involves No Long-Range Conformational Change In The Free
Enzyme
Length = 416
Score = 155 bits (391), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 125/389 (32%), Positives = 187/389 (48%), Gaps = 78/389 (20%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAPIY--------FEKY------EVHGDMKRVPQQV 77
+ I GDGIG VT A+ +V++A Y E Y +V+G +P +
Sbjct: 29 IPYIEGDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAET 88
Query: 78 LDSIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELDLYAAL--VNCFNLPGLPTRHQNV-D 134
LD IR+ +V +KG L TPVGGG+ LNV LR+ELDLY L V + P +H + D
Sbjct: 89 LDLIREYRVAIKGPLTTPVGGGIRXLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTD 148
Query: 135 IVVIRENTEGEYSGLE--------HEVVPGVVESLKVI-----------TKFCSE----R 171
+V+ REN+E Y+G+E +V+ + E + V K CSE R
Sbjct: 149 MVIFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKR 208
Query: 172 IAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVA----------------TKY 215
+ + A EYA N R VT VHK NIMK +G F + ++A K
Sbjct: 209 LVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKN 268
Query: 216 PS----IKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGN 271
P+ I ++I D Q++ +P ++DV+ NL G+ +S+ A GG G+ PGA N
Sbjct: 269 PNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGA-N 327
Query: 272 VGNE------------KVVEQKKANPVALLLSSAMMLRHLQFPSFAD----RLETAVK-R 314
+G+E K Q K NP +++LS+ MMLRH+ + AD +E A+ +
Sbjct: 328 IGDECALFEATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAINAK 387
Query: 315 VISEEKYRTKDLGGGCTTQQIVDAVIANL 343
++ + R D + DA+I N+
Sbjct: 388 TVTYDFERLMDGAKLLKCSEFGDAIIENM 416
>pdb|1CW1|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase Mutant K230m
Bound To Isocitrate And Mn2+
pdb|1CW4|A Chain A, Crystal Structure Of K230m Isocitrate Dehydrogenase In
Complex With Alpha-Ketoglutarate
pdb|1IDC|A Chain A, Isocitrate Dehydrogenase From E.coli (mutant K230m),
Steady-state Intermediate Complex Determined By Laue
Crystallography
pdb|1IDF|A Chain A, Isocitrate Dehydrogenase K230m Mutant Apo Enzyme
Length = 416
Score = 155 bits (391), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 125/389 (32%), Positives = 187/389 (48%), Gaps = 78/389 (20%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAPIY--------FEKY------EVHGDMKRVPQQV 77
+ I GDGIG VT A+ +V++A Y E Y +V+G +P +
Sbjct: 29 IPYIEGDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAET 88
Query: 78 LDSIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELDLYAAL--VNCFNLPGLPTRHQNV-D 134
LD IR+ +V +KG L TPVGGG+ SLNV LR+ELDLY L V + P +H + D
Sbjct: 89 LDLIREYRVAIKGPLTTPVGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTD 148
Query: 135 IVVIRENTEGEYSGLE--------HEVVPGVVESLKVI-----------TKFCSE----R 171
+V+ REN+E Y+G+E +V+ + E + V K CSE R
Sbjct: 149 MVIFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKR 208
Query: 172 IAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVA----------------TKY 215
+ + A EYA N R VT VH NIMK +G F + ++A K
Sbjct: 209 LVRAAIEYAIANDRDSVTLVHMGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKN 268
Query: 216 PS----IKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGN 271
P+ I ++I D Q++ +P ++DV+ NL G+ +S+ A GG G+ PGA N
Sbjct: 269 PNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGA-N 327
Query: 272 VGNE------------KVVEQKKANPVALLLSSAMMLRHLQFPSFAD----RLETAVK-R 314
+G+E K Q K NP +++LS+ MMLRH+ + AD +E A+ +
Sbjct: 328 IGDECALFEATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAINAK 387
Query: 315 VISEEKYRTKDLGGGCTTQQIVDAVIANL 343
++ + R D + DA+I N+
Sbjct: 388 TVTYDFERLMDGAKLLKCSEFGDAIIENM 416
>pdb|4AJB|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Isocitrate, Magnesium(Ii) And
Thionadp
pdb|4AJC|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Alpha-Ketoglutarate, Calcium(Ii)
And Adenine Nucleotide Phosphate
pdb|4AJR|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Alpha-Ketoglutarate,
Magnesium(Ii) And Nadph - The Product Complex
pdb|4AJS|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Isocitrate, Magnesium(Ii),
Adenosine 2',5'-Biphosphate And
Ribosylnicotinamide-5'-Phosphate
Length = 416
Score = 155 bits (391), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 125/389 (32%), Positives = 187/389 (48%), Gaps = 78/389 (20%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAPIY--------FEKY------EVHGDMKRVPQQV 77
+ I GDGIG VT A+ +V++A Y E Y +V+G +P +
Sbjct: 29 IPYIEGDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAET 88
Query: 78 LDSIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELDLYAAL--VNCFNLPGLPTRHQNV-D 134
LD IR+ +V + G L TPVGGG+ SLNV LR+ELDLY L V + P +H + D
Sbjct: 89 LDLIREYRVAIMGPLTTPVGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTD 148
Query: 135 IVVIRENTEGEYSGLE--------HEVVPGVVESLKVI-----------TKFCSE----R 171
+V+ REN+E Y+G+E +V+ + E + V K CSE R
Sbjct: 149 MVIFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKR 208
Query: 172 IAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVA----------------TKY 215
+ + A EYA N R VT VHK NIMK +G F + ++A K
Sbjct: 209 LVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKN 268
Query: 216 PS----IKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGN 271
P+ I ++I D Q++ +P ++DV+ NL G+ +S+ A GG G+ PGA N
Sbjct: 269 PNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGA-N 327
Query: 272 VGNE------------KVVEQKKANPVALLLSSAMMLRHLQFPSFAD----RLETAVK-R 314
+G+E K Q K NP +++LS+ MMLRH+ + AD +E A+ +
Sbjct: 328 IGDECALFEATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAINAK 387
Query: 315 VISEEKYRTKDLGGGCTTQQIVDAVIANL 343
++ + R D + DA+I N+
Sbjct: 388 TVTYDFERLMDGAKLLKCSEFGDAIIENM 416
>pdb|1GRP|A Chain A, Regulatory And Catalytic Mechanisms In Escherichia Coli
Isocitrate Dehydrogenase: Multiple Roles For N115
Length = 416
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 125/389 (32%), Positives = 187/389 (48%), Gaps = 78/389 (20%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAPIY--------FEKY------EVHGDMKRVPQQV 77
+ I GDGIG VT A+ +V++A Y E Y +V+G +P +
Sbjct: 29 IPYIEGDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAET 88
Query: 78 LDSIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELDLYAAL--VNCFNLPGLPTRHQNV-D 134
LD IR+ +V +KG L TPVGGG+ SL V LR+ELDLY L V + P +H + D
Sbjct: 89 LDLIREYRVAIKGPLTTPVGGGIRSLLVALRQELDLYICLRPVRYYQGTPSPVKHPELTD 148
Query: 135 IVVIRENTEGEYSGLE--------HEVVPGVVESLKVI-----------TKFCSE----R 171
+V+ REN+E Y+G+E +V+ + E + V K CSE R
Sbjct: 149 MVIFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPDHCGIGIKPCSEEGTKR 208
Query: 172 IAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVA----------------TKY 215
+ + A EYA N R VT VHK NIMK +G F + ++A K
Sbjct: 209 LVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKN 268
Query: 216 PS----IKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGN 271
P+ I ++I D Q++ +P ++DV+ NL G+ +S+ A GG G+ PGA N
Sbjct: 269 PNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGA-N 327
Query: 272 VGNE------------KVVEQKKANPVALLLSSAMMLRHLQFPSFAD----RLETAVK-R 314
+G+E K Q K NP +++LS+ MMLRH+ + AD +E A+ +
Sbjct: 328 IGDECALFEATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAINAK 387
Query: 315 VISEEKYRTKDLGGGCTTQQIVDAVIANL 343
++ + R D + DA+I N+
Sbjct: 388 TVTYDFERLMDGAKLLKCSEFGDAIIENM 416
>pdb|1GRO|A Chain A, Regulatory And Catalytic Mechanisms In Escherichia Coli
Isocitrate Dehydrogenase: Multiple Roles For N115
Length = 416
Score = 152 bits (383), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 124/389 (31%), Positives = 186/389 (47%), Gaps = 78/389 (20%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAPIY--------FEKY------EVHGDMKRVPQQV 77
+ I GDGIG VT A+ +V++A Y E Y +V+G +P +
Sbjct: 29 IPYIEGDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAET 88
Query: 78 LDSIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELDLYAAL--VNCFNLPGLPTRHQNV-D 134
LD IR+ +V +KG L TPVGGG+ L V LR+ELDLY L V + P +H + D
Sbjct: 89 LDLIREYRVAIKGPLTTPVGGGIRELLVALRQELDLYICLRPVRYYQGTPSPVKHPELTD 148
Query: 135 IVVIRENTEGEYSGLE--------HEVVPGVVESLKVI-----------TKFCSE----R 171
+V+ REN+E Y+G+E +V+ + E + V K CSE R
Sbjct: 149 MVIFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPDHCGIGIKPCSEEGTKR 208
Query: 172 IAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVA----------------TKY 215
+ + A EYA N R VT VHK NIMK +G F + ++A K
Sbjct: 209 LVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKN 268
Query: 216 PS----IKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGN 271
P+ I ++I D Q++ +P ++DV+ NL G+ +S+ A GG G+ PGA N
Sbjct: 269 PNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGA-N 327
Query: 272 VGNE------------KVVEQKKANPVALLLSSAMMLRHLQFPSFAD----RLETAVK-R 314
+G+E K Q K NP +++LS+ MMLRH+ + AD +E A+ +
Sbjct: 328 IGDECALFEATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAINAK 387
Query: 315 VISEEKYRTKDLGGGCTTQQIVDAVIANL 343
++ + R D + DA+I N+
Sbjct: 388 TVTYDFERLMDGAKLLKCSEFGDAIIENM 416
>pdb|2D4V|A Chain A, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
pdb|2D4V|B Chain B, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
pdb|2D4V|C Chain C, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
pdb|2D4V|D Chain D, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
Length = 429
Score = 151 bits (382), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 119/398 (29%), Positives = 182/398 (45%), Gaps = 101/398 (25%)
Query: 19 TYMPRPGDGSPRA-------------VTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYE 65
T++ +P GSP + I GDGIG VT A+ V++A A +Y + +
Sbjct: 3 THIQKPATGSPLTLLNGVLQVPDQPIIPFIEGDGIGCDVTPAMRSVVDAAVAKVYGGQRQ 62
Query: 66 V--------------HGDMKRVPQQVLDSIRKNKVCLKGGLKTPVGGGVSSLNVQLRKEL 111
+ +G+ + +P + + +IR+ KV +KG L+TPVGGG+ SLNV +R++L
Sbjct: 63 IAWMELFAGQKAVQLYGEGQYLPDETMAAIREYKVAIKGPLETPVGGGIRSLNVAMRQDL 122
Query: 112 DLYAAL--VNCFNLPGLPTRH-QNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVI---- 164
DLY L V F P RH + VD+V+ REN+E Y+G+E G E+ K+I
Sbjct: 123 DLYVCLRPVRYFEGTPSPMRHPEKVDMVIFRENSEDIYAGIEWPA--GSPEAEKIIRFLR 180
Query: 165 -----TKF----------------CSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGL 203
TK SER+ + +YA + + V+ VHK NIMK +G
Sbjct: 181 EEMGVTKIRFPDSSAIGIKPVSTEGSERLIRRTIQYALEHGKPSVSLVHKGNIMKFTEGG 240
Query: 204 FLE-----SCREVATKYPSIK----------------------------YNEIIVDNCCM 230
F + + RE A + + + ++I DN
Sbjct: 241 FRDWGYALAEREFAGRVFTWRQKAAISKAEGKAAGQKAEQQAIADGKLIIKDVIADNFLQ 300
Query: 231 QLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGNVGNEKVVE----------- 279
Q++ +PE + V+ T NL G+ VS+ A GG G+ PGA + E
Sbjct: 301 QILLRPEDYSVVATLNLNGDYVSDALAAEVGGIGMAPGANLSDTHAIFEATHGTAPDIAG 360
Query: 280 QKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVIS 317
Q KANP +L+LS+ MML HL + A + A+ I+
Sbjct: 361 QGKANPSSLILSAVMMLEHLGWGEAAQAIVAAMNATIA 398
>pdb|1HQS|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Bacillus Subtilis
pdb|1HQS|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Bacillus Subtilis
Length = 423
Score = 151 bits (381), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 118/403 (29%), Positives = 182/403 (45%), Gaps = 91/403 (22%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAPIY-----FEKYEVHGDMK-------RVPQQVLD 79
+ I GDG GP + NA +V+EA Y EV+ K +P + LD
Sbjct: 22 IPFIEGDGTGPDIWNAASKVLEAAVEKAYKGEKKITWKEVYAGEKAYNKTGEWLPAETLD 81
Query: 80 SIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELDLYAALVNCFNLPGLPT---RHQNVDIV 136
IR+ + +KG L TPVGGG+ SLNV LR+ELDL+ L G+P+ R ++ D+V
Sbjct: 82 VIREYFIAIKGPLTTPVGGGIRSLNVALRQELDLFVXLRPVRYFTGVPSPVKRPEDTDMV 141
Query: 137 VIRENTEGEYSGLEH----EVVPGVVESL-------------------KVITKFCSERIA 173
+ RENTE Y+G+E+ E V ++ L K +++ + R+
Sbjct: 142 IFRENTEDIYAGIEYAKGSEEVQKLISFLQNELNVNKIRFPETSGIGIKPVSEEGTSRLV 201
Query: 174 KYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATK------YPSIKYNEI---- 223
+ A +YA + RK VT VHK NIMK +G F E+A K + +Y+ I
Sbjct: 202 RAAIDYAIEHGRKSVTLVHKGNIMKFTEGAFKNWGYELAEKEYGDKVFTWAQYDRIAEEQ 261
Query: 224 -----------------------IVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIA 260
I D Q++++P +FDV+ T NL G+ +S+ A
Sbjct: 262 GKDAANKAQSEAEAAGKIIIKDSIADIFLQQILTRPNEFDVVATMNLNGDYISDALAAQV 321
Query: 261 GGTGVMPGAGNVGNE--------------KVVEQKKANPVALLLSSAMMLRHLQFPSFAD 306
GG G+ PGA N+ E K K NP +++LS ++L HL + AD
Sbjct: 322 GGIGIAPGA-NINYETGHAIFEATHGTAPKYAGLDKVNPSSVILSGVLLLEHLGWNEAAD 380
Query: 307 RL-----ETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANLD 344
+ +T +V++ + R D + + +I N+D
Sbjct: 381 LVIKSMEKTIASKVVTYDFARLMDGATEVKCSEFGEELIKNMD 423
>pdb|3DMS|A Chain A, 1.65a Crystal Structure Of Isocitrate Dehydrogenase From
Burkholderia Pseudomallei
Length = 427
Score = 147 bits (371), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 110/361 (30%), Positives = 178/361 (49%), Gaps = 73/361 (20%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVH--------------GDMKRVPQQV 77
+ I GDG G +T + +V++A Y K ++H G +P++
Sbjct: 39 IPYIEGDGTGFDITPVMIKVVDAAVEKAYGGKKKIHWMEIYAGEKATKVYGPDVWLPEET 98
Query: 78 LDSIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELDLYAALVNCFNLPGLPT---RHQNVD 134
L +++ V +KG L TPVGGG+ SLNV LR+ELDLY L G+P+ + +
Sbjct: 99 LQVLKEYVVSIKGPLTTPVGGGIRSLNVALRQELDLYVCLRPIQYFKGVPSPVREPEKTN 158
Query: 135 IVVIRENTEGEYSGLEH--------EVVPGVVESLKV---------------ITKFCSER 171
+V+ REN+E Y+G+E +V+ + E + V ++K +ER
Sbjct: 159 MVIFRENSEDIYAGIEWAAESEQAKKVIKFLQEEMGVKKIRFPQTSGIGIKPVSKEGTER 218
Query: 172 IAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKY---------PSIKY-- 220
+ + A +YA N RK VT VHK NIMK +G F ++ +A K P +K+
Sbjct: 219 LVRKAIQYAIDNDRKSVTLVHKGNIMKFTEGAFRDAGYALAQKEFGAELIDGGPWMKFKN 278
Query: 221 ----NEIIV-----DNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGN 271
NEI+V D Q++ +P ++DV+ T NL G+ +S+ A GG G+ PGA N
Sbjct: 279 PKTGNEIVVKDSIADAFLQQILLRPAEYDVIATLNLNGDYISDALAAQVGGIGIAPGA-N 337
Query: 272 VGNE------------KVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEE 319
+ + K + NP + +LS+ MMLRHL + AD + +A+++ I ++
Sbjct: 338 LSDSVAMFEATHGTAPKYAGKDYVNPGSEILSAEMMLRHLGWTEAADVIISAMEKSIKQK 397
Query: 320 K 320
+
Sbjct: 398 R 398
>pdb|3U1H|A Chain A, Crystal Structure Of Ipmdh From The Last Common Ancestor
Of Bacillus
pdb|3U1H|B Chain B, Crystal Structure Of Ipmdh From The Last Common Ancestor
Of Bacillus
Length = 390
Score = 142 bits (357), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 117/360 (32%), Positives = 187/360 (51%), Gaps = 57/360 (15%)
Query: 30 RAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDM----------KRVPQQVLD 79
+ + ++PGDGIGP V A +V++A+ A + ++E + +P++ LD
Sbjct: 24 KKIAVLPGDGIGPEVMEAAIEVLKAV-AERFGHEFEFEYGLIGGAAIDEAGTPLPEETLD 82
Query: 80 SIRKNKVCLKGGLKTPVGGGVSSLN----------VQLRKELDLYAAL--VNCFN--LPG 125
R + L G VGG N + +RK LDL+A L V ++
Sbjct: 83 VCRGSDAILLGA----VGGPKWDQNPSELRPEKGLLGIRKGLDLFANLRPVKVYDSLADA 138
Query: 126 LPTRHQ---NVDIVVIRENTEGEYSGLEHEVVP----GVVESLKVITKFCSERIAKYAFE 178
P + + VD+V++RE T G Y G E V++L + T+ ERI + AFE
Sbjct: 139 SPLKKEVIEGVDLVIVRELTGGLYFGEPSERYEEGEEAAVDTL-LYTREEIERIIRKAFE 197
Query: 179 YAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQ 238
A L +KKVT+V KAN+++ + L+ E EVA +YP ++ ++VDN MQL+ P Q
Sbjct: 198 LA-LTRKKKVTSVDKANVLE-SSRLWREVAEEVAKEYPDVELEHMLVDNAAMQLIRNPRQ 255
Query: 239 FDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAG------------NVGNEKVVEQKKANPV 286
FDV+VT N++G+++S+ A+ I G G++P A + + + ANP+
Sbjct: 256 FDVIVTENMFGDILSDEASMITGSLGMLPSASLSTDGLGLYEPVHGSAPDIAGKGIANPL 315
Query: 287 ALLLSSAMMLRH-LQFPSFADRLETAVKRVISEEKYRTKDLG--GG--CTTQQIVDAVIA 341
A +LS+AMMLR+ A +E AV++V++ E YRT D+ GG +T ++ D V A
Sbjct: 316 ATILSAAMMLRYSFGLEEEAKAIEKAVEKVLA-EGYRTADIAKPGGKYVSTTEMTDEVKA 374
>pdb|1V94|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Aeropyrum Pernix
pdb|1V94|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Aeropyrum Pernix
pdb|1TYO|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix In Complex With Etheno-Nadp
pdb|1TYO|B Chain B, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix In Complex With Etheno-Nadp
pdb|1XGV|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix
pdb|1XGV|B Chain B, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix
pdb|1XKD|A Chain A, Ternary Complex Of Isocitrate Dehydrogenase From The
Hyperthermophile Aeropyrum Pernix
pdb|1XKD|B Chain B, Ternary Complex Of Isocitrate Dehydrogenase From The
Hyperthermophile Aeropyrum Pernix
Length = 435
Score = 140 bits (354), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 107/363 (29%), Positives = 172/363 (47%), Gaps = 70/363 (19%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEV------HGDMKR------VPQQVLD 79
V I GDG+GP V + +V++A +Y + G + R +P+ L+
Sbjct: 38 VAFIRGDGVGPEVVESALKVVDAAVKKVYGGSRRIVWWELLAGHLAREKCGELLPKATLE 97
Query: 80 SIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELDLYAAL--VNCFNLPGLPTRHQNVDIVV 137
IR +V LKG L+TPVG G SLNV +R+ LDLYA + V + P VD+V+
Sbjct: 98 GIRLARVALKGPLETPVGTGYRSLNVAIRQALDLYANIRPVRYYGQPAPHKYADRVDMVI 157
Query: 138 IRENTEGEYSGLE----------------HEVVPGVVES----LKVITKFCSERIAKYAF 177
RENTE Y+G+E E + E +K I++F + R+ + A
Sbjct: 158 FRENTEDVYAGIEWPHDSPEAARIRRFLAEEFGISIREDAGIGVKPISRFATRRLMERAL 217
Query: 178 EYAYLNYRKKVTAVHKANIMKLADGLFLESCREVA---------------TKYPSIK--- 219
E+A N VT +HK NIMK +G F+ EVA KY ++
Sbjct: 218 EWALRNGNTVVTIMHKGNIMKYTEGAFMRWAYEVALEKFREHVVTEQEVQEKYGGVRPEG 277
Query: 220 ---YNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGNVGN-- 274
N+ I DN Q++++P + V+V PNL G+ +S+ A+ + GG G+ G N+G+
Sbjct: 278 KILVNDRIADNMLQQIITRPWDYQVIVAPNLNGDYISDAASALVGGIGMAAGM-NMGDGI 336
Query: 275 ----------EKVVEQKKANPVALLLSSAMML-RHLQFPSFADRLETAVKRVISEEKYRT 323
K + NP A +LS+++++ + + +E A+++ + +K T
Sbjct: 337 AVAEPVHGTAPKYAGKDLINPSAEILSASLLIGEFMGWREVKSIVEYAIRKAVQSKKV-T 395
Query: 324 KDL 326
+DL
Sbjct: 396 QDL 398
>pdb|3FMX|X Chain X, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Putida Complexed With Nadh
Length = 364
Score = 139 bits (349), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 111/365 (30%), Positives = 180/365 (49%), Gaps = 60/365 (16%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAM---HA-PIYFEKYEV--------HGDMKRVPQQVLD 79
+ IPGDGIG V +V+EA H + F+ +E HG M +P +
Sbjct: 8 IAAIPGDGIGLEVLPEGIRVLEAAALKHGLALEFDTFEWASCDYYLQHGKM--MPDDWAE 65
Query: 80 SIRKNKVCLKGGLKTP--VGGGVSSLN--VQLRKELDLYAALVNCFNLPGLPTRHQN--- 132
+++ G + P V +S ++ R+E D Y + PG+P N
Sbjct: 66 QLKQYDAIYFGAVGWPDKVPDHISLWGSLLKFRREFDQYVNIRPVRLFPGVPCALANRKV 125
Query: 133 --VDIVVIRENTEGEYSGL--------EHEVVPGVVESLKVITKFCSERIAKYAFEYAYL 182
+D VV+RENTEGEYS L E+E+V + ES + T+ +RI KYAF+ A
Sbjct: 126 GDIDFVVVRENTEGEYSSLGGIMFENTENEIV--IQES--IFTRRGVDRILKYAFDLAEK 181
Query: 183 NYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVM 242
RK VT+ K+N M ++ + + +A YP + +++ +D C + V +PE+FDV+
Sbjct: 182 RERKHVTSATKSNGMAISMPYWDKRTEAMAAHYPHVSWDKQHIDILCARFVLQPERFDVV 241
Query: 243 VTPNLYGNLVSNTAAGIAGGTGVMPGAGNVGNEK---------------VVEQKKANPVA 287
V NL+G+++S+ AG G+ P A N+ E+ + + ANP+A
Sbjct: 242 VASNLFGDILSDLGPACAGTIGIAPSA-NLNPERNFPSLFEPVHGSAPDIFGKNIANPIA 300
Query: 288 LLLSSAMMLRHL-----QFPSFADRLETAVKRVISEEKYRTKDLGGGCTTQQIVDAV--- 339
++ S A+ML L ++ D + A++RVI++ T D+GG +TQQ+ A+
Sbjct: 301 MIWSGALMLEFLGQGDERYQRAHDDMLNAIERVIADGSV-TPDMGGTLSTQQVGAAISDT 359
Query: 340 IANLD 344
+A LD
Sbjct: 360 LARLD 364
>pdb|2AYQ|A Chain A, 3-Isopropylmalate Dehydrogenase From The Moderate
Facultative Thermophile, Bacillus Coagulans
pdb|2AYQ|B Chain B, 3-Isopropylmalate Dehydrogenase From The Moderate
Facultative Thermophile, Bacillus Coagulans
Length = 366
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 116/359 (32%), Positives = 188/359 (52%), Gaps = 53/359 (14%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAM-----HAPIYFEKYEVHGDM-----KRVPQQVLDSI 81
+ ++PGDGIGP V +A +V++ + H + FE + G +P++ LD
Sbjct: 5 LAVLPGDGIGPEVMDAAIRVLKTVLDNDGHEAV-FENALIGGAAIDEAGTPLPEETLDIC 63
Query: 82 RKNKVCLKGGLKTP-VGGGVSSLNVQ-----LRKELDL---------YAALVNCFNLPGL 126
R++ L G + P +SL + LRKE+ L YA L+N P
Sbjct: 64 RRSDAILLGAVGGPKWDHNPASLRPEKGLLGLRKEMGLFANLRPVKAYATLLNAS--PLK 121
Query: 127 PTRHQNVDIVVIRENTEGEYSGLEHEVV-PG---VVESLKVITKFCSERIAKYAFEYAYL 182
R +NVD+V++RE T G Y G E PG VV++L T+ ERI + AF+ A +
Sbjct: 122 RERVENVDLVIVRELTGGLYFGRPSERRGPGENEVVDTL-AYTREEIERIIEKAFQLAQI 180
Query: 183 NYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVM 242
RKK+ +V KAN+++ + ++ E E A KYP ++ + ++VD+ MQL++ P QFDV+
Sbjct: 181 R-RKKLASVDKANVLE-SSRMWREIAEETAKKYPDVELSHMLVDSTSMQLIANPGQFDVI 238
Query: 243 VTPNLYGNLVSNTAAGIAGGTGVMPGAGNVGNE------------KVVEQKKANPVALLL 290
VT N++G+++S+ A+ I G G++P A + + Q KANP+ +L
Sbjct: 239 VTENMFGDILSDEASVITGSLGMLPSASLRSDRFGMYEPVHGSAPDIAGQGKANPLGTVL 298
Query: 291 SSAMMLRH-LQFPSFADRLETAVKRVISEEKYRTKDL----GGGCTTQQIVDAVIANLD 344
S+A+MLR+ A +E AV V+ ++ Y T DL G +T ++ D +I L+
Sbjct: 299 SAALMLRYSFGLEKEAAAIEKAVDDVL-QDGYCTGDLQVANGKVVSTIELTDRLIEKLN 356
>pdb|1V53|A Chain A, The Crystal Structure Of 3-Isopropylmalate Dehydrogenase
From Bacillus Coagulans
pdb|1V53|B Chain B, The Crystal Structure Of 3-Isopropylmalate Dehydrogenase
From Bacillus Coagulans
Length = 366
Score = 136 bits (343), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 116/359 (32%), Positives = 188/359 (52%), Gaps = 53/359 (14%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAM-----HAPIYFEKYEVHGDM-----KRVPQQVLDSI 81
+ ++PGDGIGP V +A +V++ + H + FE + G +P++ LD
Sbjct: 5 LAVLPGDGIGPEVMDAAIRVLKTVLDNDGHEAV-FENALIGGAAIDEAGTPLPEETLDIC 63
Query: 82 RKNKVCLKGGLKTP-VGGGVSSLNVQ-----LRKELDL---------YAALVNCFNLPGL 126
R++ L G + P +SL + LRKE+ L YA L+N P
Sbjct: 64 RRSDAILLGAVGGPKWDHNPASLRPEKGLLGLRKEMGLFANLRPVKAYATLLNAS--PLK 121
Query: 127 PTRHQNVDIVVIRENTEGEYSGLEHEVV-PG---VVESLKVITKFCSERIAKYAFEYAYL 182
R +NVD+V++RE T G Y G E PG VV++L T+ ERI + AF+ A +
Sbjct: 122 RERVENVDLVIVRELTGGLYFGRPSERRGPGENEVVDTL-AYTREEIERIIEKAFQLAQI 180
Query: 183 NYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVM 242
RKK+ +V KAN+++ + ++ E E A KYP ++ + ++VD+ MQL++ P QFDV+
Sbjct: 181 R-RKKLASVDKANVLE-SSRMWREIAEETAKKYPDVELSHMLVDSTSMQLIANPGQFDVI 238
Query: 243 VTPNLYGNLVSNTAAGIAGGTGVMPGAGNVGNE------------KVVEQKKANPVALLL 290
VT N++G+++S+ A+ I G G++P A + + Q KANP+ +L
Sbjct: 239 VTENMFGDILSDEASVITGSLGMLPSASLRSDRFGMYEPVHGSAPDIAGQGKANPLGTVL 298
Query: 291 SSAMMLRH-LQFPSFADRLETAVKRVISEEKYRTKDL----GGGCTTQQIVDAVIANLD 344
S+A+MLR+ A +E AV V+ ++ Y T DL G +T ++ D +I L+
Sbjct: 299 SAALMLRYSFGLEKEAAAIEKAVDDVL-QDGYCTGDLQVANGKVVSTIELTDRLIEKLN 356
>pdb|1V5B|A Chain A, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|B Chain B, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|C Chain C, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|D Chain D, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|E Chain E, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|F Chain F, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|G Chain G, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|H Chain H, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
Length = 366
Score = 136 bits (343), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 116/359 (32%), Positives = 188/359 (52%), Gaps = 53/359 (14%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAM-----HAPIYFEKYEVHGDM-----KRVPQQVLDSI 81
+ ++PGDGIGP V +A +V++ + H + FE + G +P++ LD
Sbjct: 5 LAVLPGDGIGPEVMDAAIRVLKTVLDNDGHEAV-FENALIGGAAIDEAGTPLPEETLDIC 63
Query: 82 RKNKVCLKGGLKTP-VGGGVSSLNVQ-----LRKELDL---------YAALVNCFNLPGL 126
R++ L G + P +SL + LRKE+ L YA L+N P
Sbjct: 64 RRSDAILLGAVGGPKWDHNPASLRPEKGLLGLRKEMGLFANLRPVKAYATLLNAS--PLK 121
Query: 127 PTRHQNVDIVVIRENTEGEYSGLEHEVV-PG---VVESLKVITKFCSERIAKYAFEYAYL 182
R +NVD+V++RE T G Y G E PG VV++L T+ ERI + AF+ A +
Sbjct: 122 RERVENVDLVIVRELTGGLYFGRPSERRGPGENEVVDTL-AYTREEIERIIEKAFQLAQI 180
Query: 183 NYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVM 242
RKK+ +V KAN+++ + ++ E E A KYP ++ + ++VD+ MQL++ P QFDV+
Sbjct: 181 R-RKKLASVDKANVLE-SSRMWREIAEETAKKYPDVELSHMLVDSTAMQLIANPGQFDVI 238
Query: 243 VTPNLYGNLVSNTAAGIAGGTGVMPGAGNVGNE------------KVVEQKKANPVALLL 290
VT N++G+++S+ A+ I G G++P A + + Q KANP+ +L
Sbjct: 239 VTENMFGDILSDLASVITGSLGMLPSASLRSDRFGMYEPVHGSAPDIAGQGKANPLGTVL 298
Query: 291 SSAMMLRH-LQFPSFADRLETAVKRVISEEKYRTKDL----GGGCTTQQIVDAVIANLD 344
S+A+MLR+ A +E AV V+ ++ Y T DL G +T ++ D +I L+
Sbjct: 299 SAALMLRYSFGLEKEAAAIEKAVDDVL-QDGYCTGDLQVANGKVVSTIELTDRLIEKLN 356
>pdb|1VLC|A Chain A, Crystal Structure Of 3-isopropylmalate Dehydrogenase
(tm0556) From Thermotoga Maritima At 1.90 A Resolution
Length = 366
Score = 135 bits (340), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 118/359 (32%), Positives = 182/359 (50%), Gaps = 56/359 (15%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAPI--YFEKYEVH--GD-MKRVPQQVLDSIRKNKV 86
+ ++PGDGIGP V +V+E + FEK H GD + R + + + +K +
Sbjct: 15 IAVLPGDGIGPEVVREALKVLEVVEKKTGKTFEKVFGHIGGDAIDRFGEPLPEETKK--I 72
Query: 87 CLK---------GGLKT--------PVGGGVSSLNVQLRKELDLYAALVNCFNLPGL--- 126
CL+ GG K P GG+ + LRK L+LYA + L
Sbjct: 73 CLEADAIFLGSVGGPKWDDLPPEKRPEIGGL----LALRKMLNLYANIRPIKVYRSLVHV 128
Query: 127 -PTRHQ----NVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAY 181
P + + VD+V +RE + G Y G + + + ERIA+ AFE A
Sbjct: 129 SPLKEKVIGSGVDLVTVRELSYGVYYGQPRGLDEEKGFDTMIYDRKTVERIARTAFEIAK 188
Query: 182 LNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDV 241
N RKKVT+V KAN++ + L+ + EVA +YP ++ I VDN MQL+ KP QFDV
Sbjct: 189 -NRRKKVTSVDKANVL-YSSMLWRKVVNEVAREYPDVELTHIYVDNAAMQLILKPSQFDV 246
Query: 242 MVTPNLYGNLVSNTAAGIAGGTGVMPGAGNVGNEKVVE-----------QKKANPVALLL 290
++T N++G+++S+ +A + G G++P A + G++ + E + ANP+A +L
Sbjct: 247 ILTTNMFGDILSDESAALPGSLGLLPSA-SFGDKNLYEPAGGSAPDIAGKNIANPIAQIL 305
Query: 291 SSAMMLRH-LQFPSFADRLETAVKRVISEEKYRTKDLG----GGCTTQQIVDAVIANLD 344
S AMML H A ++E AV+ VI EE YRT+D+ +T Q+ D + L+
Sbjct: 306 SLAMMLEHSFGMVEEARKIERAVELVI-EEGYRTRDIAEDPEKAVSTSQMGDLICKKLE 363
>pdb|1A05|A Chain A, Crystal Structure Of The Complex Of 3-Isopropylmalate
Dehydrogenase From Thiobacillus Ferrooxidans With 3-
Isopropylmalate
pdb|1A05|B Chain B, Crystal Structure Of The Complex Of 3-Isopropylmalate
Dehydrogenase From Thiobacillus Ferrooxidans With 3-
Isopropylmalate
Length = 358
Score = 134 bits (336), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 107/340 (31%), Positives = 160/340 (47%), Gaps = 41/340 (12%)
Query: 30 RAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHG---------DMKRVPQQVLDS 80
+ + + GDGIGP + A QV++A+ + G +P L
Sbjct: 2 KKIAIFAGDGIGPEIVAAARQVLDAVDQAAHLGLRCTEGLVGGAALDASDDPLPAASLQL 61
Query: 81 IRKNKVCLKGGLKTPVGGGVSSLN------VQLRKELDLYAALVNCFNLPGL-------P 127
+ G + P ++LRK LDLYA L P L P
Sbjct: 62 AMAADAVILGAVGGPRWDAYPPAKRPEQGLLRLRKGLDLYANLRPAQIFPQLLDASPLRP 121
Query: 128 TRHQNVDIVVIRENTEGEYSGLEH--EVVPGVVESLKVITKFCSE--RIAKYAFEYAYLN 183
++VDI+V+RE T Y G EV+ G + E RIA AF A
Sbjct: 122 ELVRDVDILVVRELTGDIYFGQPRGLEVIDGKRRGFNTMVYDEDEIRRIAHVAFRAAQ-G 180
Query: 184 YRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMV 243
RK++ +V KAN+++ L+ E EVA YP ++ + + VDN MQL+ P QFDV++
Sbjct: 181 RRKQLCSVDKANVLETTR-LWREVVTEVARDYPDVRLSHMYVDNAAMQLIRAPAQFDVLL 239
Query: 244 TPNLYGNLVSNTAAGIAGGTGVMP----GAGNVGNE-------KVVEQKKANPVALLLSS 292
T N++G+++S+ A+ + G G++P G G E + Q KANP+A +LS
Sbjct: 240 TGNMFGDILSDEASQLTGSIGMLPSASLGEGRAMYEPIHGSAPDIAGQDKANPLATILSV 299
Query: 293 AMMLRH-LQFPSFADRLETAVKRVISEEKYRTKDLGGGCT 331
AMMLRH L +A R+E AV+RV+ ++ RT D+ T
Sbjct: 300 AMMLRHSLNAEPWAQRVEAAVQRVL-DQGLRTADIAAPGT 338
>pdb|1GC8|A Chain A, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Phe
pdb|1GC8|B Chain B, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Phe
Length = 345
Score = 130 bits (326), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 102/346 (29%), Positives = 165/346 (47%), Gaps = 38/346 (10%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAP----IYFEKYEVHGDM-----KRVPQQVLDSIR 82
V ++PGDGIGP VT A +V+ A+ + +E + G + P+ +
Sbjct: 3 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVE 62
Query: 83 KNKVCLKGGLKTPVGGGV------SSLNVQLRKELDLYAALVNCFNLPGL----PTRHQ- 131
+ + L G + P G+ + + LRK DL+A L PGL P + +
Sbjct: 63 EAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEI 122
Query: 132 --NVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVT 189
VD++++RE T G Y G + + + +K ER+A+ AFE+A RK V
Sbjct: 123 ARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEFAR-KRRKHVV 181
Query: 190 AVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYG 249
+V KAN++++ + + ++ EV YP + VD M LV P +FDV+VT N++G
Sbjct: 182 SVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFG 240
Query: 250 NLVSNTAAGIAGGTGVMPGAGNVGNEKVVE-----------QKKANPVALLLSSAMMLRH 298
+++S+ A+ + G G++P A V E + ANP A +LS+AMML H
Sbjct: 241 DILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGSAPDIAGKGIANPTAAILSAAMMLEH 300
Query: 299 -LQFPSFADRLETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANL 343
A ++E AV + + E DLGG T+ V+ +L
Sbjct: 301 AFGLVELARKVEDAVAKALLETP--PPDLGGSAGTEAFTATVLRHL 344
>pdb|1IDM|A Chain A, 3-Isopropylmalate Dehydrogenase, Loop-Deleted Chimera
Length = 343
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 104/344 (30%), Positives = 163/344 (47%), Gaps = 36/344 (10%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAP----IYFEKYEVHGDM-----KRVPQQVLDSIR 82
V ++PGDGIGP VT A +V+ A+ + +E + G + P+ +
Sbjct: 3 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVE 62
Query: 83 KNKVCLKGGLKTPVGGGVSSLNVQ----LRKELDLYAALVNCFNLPGL----PTRHQ--- 131
+ + L G + P G S Q LRK DL+A L PGL P + +
Sbjct: 63 EAEAVLLGSVGGPKWGTGSVRPEQGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEIAR 122
Query: 132 NVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAV 191
VD++++RE T G Y G + + + +K ER+A+ AFE A RK V +V
Sbjct: 123 GVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEAAR-KRRKHVVSV 181
Query: 192 HKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNL 251
KAN++++ + + ++ EV YP + VD M LV P +FDV+VT N++G++
Sbjct: 182 DKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDI 240
Query: 252 VSNTAAGIAGGTGVMPGAGNVGNEKVVE-----------QKKANPVALLLSSAMMLRH-L 299
+S+ A+ + G G++P A V E + ANP A +LS+AMML H
Sbjct: 241 LSDLASVLPGSLGLLPSASLGRGTPVFEPVHGSAPDIAGKGIANPTAAILSAAMMLEHAF 300
Query: 300 QFPSFADRLETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANL 343
A ++E AV + + E DLGG T+ V+ +L
Sbjct: 301 GLVELARKVEDAVAKALLETP--PPDLGGSAGTEAFTATVLRHL 342
>pdb|3FLK|A Chain A, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Complex With Nadh, Oxalate And Metal Ion
pdb|3FLK|B Chain B, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Complex With Nadh, Oxalate And Metal Ion
pdb|3FLK|C Chain C, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Complex With Nadh, Oxalate And Metal Ion
pdb|3FLK|D Chain D, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Complex With Nadh, Oxalate And Metal Ion
Length = 364
Score = 129 bits (323), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 173/365 (47%), Gaps = 60/365 (16%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAM---HA-PIYFEKYEV--------HGDMKRVPQQVLD 79
+ IPGDGIG V +V+EA H + F+ +E HG K P +
Sbjct: 8 IAAIPGDGIGLEVLPEGIRVLEAAALKHGLALEFDTFEWASCDYYLQHG--KXXPDDWAE 65
Query: 80 SIRKNKVCLKGGLKTP--VGGGVSSLN--VQLRKELDLYAALVNCFNLPGLPTRHQN--- 132
+++ G + P V +S ++ R+E D Y + PG+P N
Sbjct: 66 QLKQYDAIYFGAVGWPDKVPDHISLWGSLLKFRREFDQYVNIRPVRLFPGVPCALANRKV 125
Query: 133 --VDIVVIRENTEGEYSGL--------EHEVVPGVVESLKVITKFCSERIAKYAFEYAYL 182
+D VV+RENTEGEYS L E+E+V + ES + T+ +RI KYAF+ A
Sbjct: 126 GDIDFVVVRENTEGEYSSLGGIXFENTENEIV--IQES--IFTRRGVDRILKYAFDLAEK 181
Query: 183 NYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVM 242
RK VT+ K+N ++ + + A YP + +++ +D C + V +PE+FDV+
Sbjct: 182 RERKHVTSATKSNGXAISXPYWDKRTEAXAAHYPHVSWDKQHIDILCARFVLQPERFDVV 241
Query: 243 VTPNLYGNLVSNTAAGIAGGTGVMPGAGNVGNEK---------------VVEQKKANPVA 287
V NL+G+++S+ AG G+ P A N+ E+ + + ANP+A
Sbjct: 242 VASNLFGDILSDLGPACAGTIGIAPSA-NLNPERNFPSLFEPVHGSAPDIFGKNIANPIA 300
Query: 288 LLLSSAMMLRHL-----QFPSFADRLETAVKRVISEEKYRTKDLGGGCTTQQIVDAV--- 339
+ S A+ L L ++ D A++RVI++ T D GG +TQQ+ A+
Sbjct: 301 XIWSGALXLEFLGQGDERYQRAHDDXLNAIERVIADGSV-TPDXGGTLSTQQVGAAISDT 359
Query: 340 IANLD 344
+A LD
Sbjct: 360 LARLD 364
>pdb|1WAL|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) Mutant (M219a)from
Thermus Thermophilus
Length = 345
Score = 128 bits (321), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 102/346 (29%), Positives = 164/346 (47%), Gaps = 38/346 (10%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAP----IYFEKYEVHGDM-----KRVPQQVLDSIR 82
V ++PGDGIGP VT A +V+ A+ + +E + G + P+ +
Sbjct: 3 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVE 62
Query: 83 KNKVCLKGGLKTPVGGGV------SSLNVQLRKELDLYAALVNCFNLPGL----PTRHQ- 131
+ + L G + P G+ + + LRK DL+A L PGL P + +
Sbjct: 63 EAEAVLLGSVGGPKWDGLPRKISPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEI 122
Query: 132 --NVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVT 189
VD++++RE T G Y G + + + +K ER+A+ AFE A RK V
Sbjct: 123 ARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEAAR-KRRKHVV 181
Query: 190 AVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYG 249
+V KAN++++ + + ++ EV YP + VD M LV P +FDV+VT N++G
Sbjct: 182 SVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAAAMHLVRSPARFDVVVTGNIFG 240
Query: 250 NLVSNTAAGIAGGTGVMPGAGNVGNEKVVE-----------QKKANPVALLLSSAMMLRH 298
+++S+ A+ + G G++P A V E + ANP A +LS+AMML H
Sbjct: 241 DILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGSAPDIAGKGIANPTAAILSAAMMLEH 300
Query: 299 -LQFPSFADRLETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANL 343
A ++E AV + + E DLGG T+ V+ +L
Sbjct: 301 AFGLVELARKVEDAVAKALLETP--PPDLGGSAGTEAFTATVLRHL 344
>pdb|1OSJ|A Chain A, Structure Of 3-isopropylmalate Dehydrogenase
pdb|1OSJ|B Chain B, Structure Of 3-isopropylmalate Dehydrogenase
Length = 345
Score = 128 bits (321), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 102/346 (29%), Positives = 164/346 (47%), Gaps = 38/346 (10%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAP----IYFEKYEVHGDM-----KRVPQQVLDSIR 82
V ++PGDGIGP VT A +V+ A+ + +E + G + P+ +
Sbjct: 3 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVE 62
Query: 83 KNKVCLKGGLKTPVGGGV------SSLNVQLRKELDLYAALVNCFNLPGL----PTRHQ- 131
+ + L G + P G+ + + LRK DL+A L PGL P + +
Sbjct: 63 EAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEI 122
Query: 132 --NVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVT 189
VD++++RE T G Y G + + + +K ER+A+ AFE A RK V
Sbjct: 123 ARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFELAR-KRRKHVV 181
Query: 190 AVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYG 249
+V KAN++++ + + ++ EV YP + VD M LV P +FDV+VT N++G
Sbjct: 182 SVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFG 240
Query: 250 NLVSNTAAGIAGGTGVMPGAGNVGNEKVVE-----------QKKANPVALLLSSAMMLRH 298
+++S+ A+ + G G++P A V E + ANP A +LS+AMML H
Sbjct: 241 DILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGSAPDIAGKGIANPTAAILSAAMMLEH 300
Query: 299 -LQFPSFADRLETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANL 343
A ++E AV + + E DLGG T+ V+ +L
Sbjct: 301 AFGLVELARKVEDAVAKALLETP--PPDLGGSAGTEAFTATVLRHL 344
>pdb|1W0D|A Chain A, The High Resolution Structure Of Mycobacterium
Tuberculosis Leub (Rv2995c)
pdb|1W0D|B Chain B, The High Resolution Structure Of Mycobacterium
Tuberculosis Leub (Rv2995c)
pdb|1W0D|C Chain C, The High Resolution Structure Of Mycobacterium
Tuberculosis Leub (Rv2995c)
pdb|1W0D|D Chain D, The High Resolution Structure Of Mycobacterium
Tuberculosis Leub (Rv2995c)
pdb|2G4O|A Chain A, Anomalous Substructure Of 3-isopropylmalate Dehydrogenase
pdb|2G4O|B Chain B, Anomalous Substructure Of 3-isopropylmalate Dehydrogenase
pdb|2G4O|C Chain C, Anomalous Substructure Of 3-isopropylmalate Dehydrogenase
pdb|2G4O|D Chain D, Anomalous Substructure Of 3-isopropylmalate Dehydrogenase
Length = 337
Score = 128 bits (321), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 99/329 (30%), Positives = 163/329 (49%), Gaps = 35/329 (10%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEV-----HGDMKRVPQQVLDSIRKNKV 86
+ +I GDGIGP VT +V++A+ + Y++ H + +P V+ +R +
Sbjct: 4 LAIIAGDGIGPEVTAEAVKVLDAVVPGVQKTSYDLGARRFHATGEVLPDSVVAELRNHDA 63
Query: 87 CLKGGL---KTPVGGGVSSLNVQLRKELDLYAALVNCFNLPGLPT---RHQNVDIVVIRE 140
L G + P G L ++LR ELD + L PG+ + + +D VV+RE
Sbjct: 64 ILLGAIGDPSVPSGVLERGLLLRLRFELDHHINLRPARLYPGVASPLSGNPGIDFVVVRE 123
Query: 141 NTEGEYSGLEHEVVPG----VVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANI 196
TEG Y+G + G V + V T F R+ AFE A RK +T VHK N+
Sbjct: 124 GTEGPYTGNGGAIRVGTPNEVATEVSVNTAFGVRRVVADAFERAR-RRRKHLTLVHKTNV 182
Query: 197 MKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTA 256
+ A GL+L + EV YP ++ VD + +++ P +FDV+VT NL+G+++++ A
Sbjct: 183 LTFAGGLWLRTVDEVGECYPDVEVAYQHVDAATIHMITDPGRFDVIVTDNLFGDIITDLA 242
Query: 257 AGIAGGTGVMPGAGNVGNEK---------------VVEQKKANPVALLLSSAMMLRHLQF 301
A + GG G + +GN+ + + Q A+P A ++S A++L HL
Sbjct: 243 AAVCGGIG-LAASGNIDATRANPSMFEPVHGSAPDIAGQGIADPTAAIMSVALLLSHLGE 301
Query: 302 PSFADRLETAVKRVIS---EEKYRTKDLG 327
A R++ AV+ ++ E+ T D+G
Sbjct: 302 HDAAARVDRAVEAHLATRGSERLATSDVG 330
>pdb|1G2U|A Chain A, The Structure Of The Mutant, A172v, Of 3-Isopropylmalate
Dehydrogenase From Thermus Thermophilus Hb8 : Its
Thermostability And Structure
Length = 345
Score = 128 bits (321), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 102/346 (29%), Positives = 164/346 (47%), Gaps = 38/346 (10%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAP----IYFEKYEVHGDM-----KRVPQQVLDSIR 82
V ++PGDGIGP VT A +V+ A+ + +E + G + P+ +
Sbjct: 3 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVE 62
Query: 83 KNKVCLKGGLKTPVGGGV------SSLNVQLRKELDLYAALVNCFNLPGL----PTRHQ- 131
+ + L G + P G+ + + LRK DL+A L PGL P + +
Sbjct: 63 EAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEI 122
Query: 132 --NVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVT 189
VD++++RE T G Y G + + + +K ER+A+ AFE A RK V
Sbjct: 123 ARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEVAR-KRRKHVV 181
Query: 190 AVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYG 249
+V KAN++++ + + ++ EV YP + VD M LV P +FDV+VT N++G
Sbjct: 182 SVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFG 240
Query: 250 NLVSNTAAGIAGGTGVMPGAGNVGNEKVVE-----------QKKANPVALLLSSAMMLRH 298
+++S+ A+ + G G++P A V E + ANP A +LS+AMML H
Sbjct: 241 DILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGSAPDIAGKGIANPTAAILSAAMMLEH 300
Query: 299 -LQFPSFADRLETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANL 343
A ++E AV + + E DLGG T+ V+ +L
Sbjct: 301 AFGLVELARKVEDAVAKALLETP--PPDLGGSAGTEAFTATVLRHL 344
>pdb|1OSI|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|B Chain B, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|C Chain C, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|D Chain D, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1HEX|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase In Complex
With Nad+: Ligand-Induced Loop-Closing And Mechanism For
Cofactor Specificity
pdb|1XAA|A Chain A, 3-Isopropylmalate Dehydrogenase, Low Temperature (100k)
Structure
pdb|1XAB|A Chain A, 3-Isopropylmalate Dehydrogenase, Low Temperature (150k)
Structure
pdb|2ZTW|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase In Complex
With The Inhibitor And Nad+
Length = 345
Score = 128 bits (321), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 102/346 (29%), Positives = 164/346 (47%), Gaps = 38/346 (10%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAP----IYFEKYEVHGDM-----KRVPQQVLDSIR 82
V ++PGDGIGP VT A +V+ A+ + +E + G + P+ +
Sbjct: 3 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVE 62
Query: 83 KNKVCLKGGLKTPVGGGV------SSLNVQLRKELDLYAALVNCFNLPGL----PTRHQ- 131
+ + L G + P G+ + + LRK DL+A L PGL P + +
Sbjct: 63 EAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEI 122
Query: 132 --NVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVT 189
VD++++RE T G Y G + + + +K ER+A+ AFE A RK V
Sbjct: 123 ARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEAAR-KRRKHVV 181
Query: 190 AVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYG 249
+V KAN++++ + + ++ EV YP + VD M LV P +FDV+VT N++G
Sbjct: 182 SVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFG 240
Query: 250 NLVSNTAAGIAGGTGVMPGAGNVGNEKVVE-----------QKKANPVALLLSSAMMLRH 298
+++S+ A+ + G G++P A V E + ANP A +LS+AMML H
Sbjct: 241 DILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGSAPDIAGKGIANPTAAILSAAMMLEH 300
Query: 299 -LQFPSFADRLETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANL 343
A ++E AV + + E DLGG T+ V+ +L
Sbjct: 301 AFGLVELARKVEDAVAKALLETP--PPDLGGSAGTEAFTATVLRHL 344
>pdb|1IPD|A Chain A, Three-Dimensional Structure Of A Highly Thermostable
Enzyme, 3- Isopropylmalate Dehydrogenase Of Thermus
Thermophilus At 2.2 Angstroms Resolution
Length = 345
Score = 128 bits (321), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 102/346 (29%), Positives = 164/346 (47%), Gaps = 38/346 (10%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAP----IYFEKYEVHGDM-----KRVPQQVLDSIR 82
V ++PGDGIGP VT A +V+ A+ + +E + G + P+ +
Sbjct: 3 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVE 62
Query: 83 KNKVCLKGGLKTPVGGGV------SSLNVQLRKELDLYAALVNCFNLPGL----PTRHQ- 131
+ + L G + P G+ + + LRK DL+A L PGL P + +
Sbjct: 63 EAEAVLLGSVGGPKWDGLPRKISPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEI 122
Query: 132 --NVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVT 189
VD++++RE T G Y G + + + +K ER+A+ AFE A RK V
Sbjct: 123 ARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEAAR-KRRKHVV 181
Query: 190 AVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYG 249
+V KAN++++ + + ++ EV YP + VD M LV P +FDV+VT N++G
Sbjct: 182 SVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFG 240
Query: 250 NLVSNTAAGIAGGTGVMPGAGNVGNEKVVE-----------QKKANPVALLLSSAMMLRH 298
+++S+ A+ + G G++P A V E + ANP A +LS+AMML H
Sbjct: 241 DILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGSAPDIAGKGIANPTAAILSAAMMLEH 300
Query: 299 -LQFPSFADRLETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANL 343
A ++E AV + + E DLGG T+ V+ +L
Sbjct: 301 AFGLVELARKVEDAVAKALLETP--PPDLGGSAGTEAFTATVLRHL 344
>pdb|1DR0|A Chain A, Structure Of Modified 3-isopropylmalate Dehydrogenase At
The C- Terminus, Hd708
pdb|1DR0|B Chain B, Structure Of Modified 3-isopropylmalate Dehydrogenase At
The C- Terminus, Hd708
Length = 346
Score = 127 bits (320), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 102/346 (29%), Positives = 163/346 (47%), Gaps = 38/346 (10%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAP----IYFEKYEVHGDM-----KRVPQQVLDSIR 82
V ++PGDGIGP VT A +V+ A+ + +E + G + P+ +
Sbjct: 3 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVE 62
Query: 83 KNKVCLKGGLKTPVGGGV------SSLNVQLRKELDLYAALVNCFNLPGL----PTRHQ- 131
+ + L G + P G+ + + LRK DL+A L PGL P + +
Sbjct: 63 EAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEI 122
Query: 132 --NVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVT 189
VD++++RE T G Y G + + + +K ER+A+ AFE A RK V
Sbjct: 123 ARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFELAR-KRRKHVV 181
Query: 190 AVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYG 249
+V KAN++++ + + ++ EV YP + VD M LV P +FDV+VT N++G
Sbjct: 182 SVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFG 240
Query: 250 NLVSNTAAGIAGGTGVMPGAGNVGNEKVVE-----------QKKANPVALLLSSAMMLRH 298
+++S+ A+ + G G++P A V E + ANP A +LS+AMML H
Sbjct: 241 DILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGSAPDIAGKGIANPTAAILSAAMMLEH 300
Query: 299 -LQFPSFADRLETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANL 343
A ++E AV + + E DLGG T+ V A +
Sbjct: 301 AFGLVELARKVEDAVAKALLETP--PPDLGGSAGTEAFTATVTATV 344
>pdb|1GC9|A Chain A, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Gly
Length = 345
Score = 127 bits (320), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 102/346 (29%), Positives = 164/346 (47%), Gaps = 38/346 (10%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAP----IYFEKYEVHGDM-----KRVPQQVLDSIR 82
V ++PGDGIGP VT A +V+ A+ + +E + G + P+ +
Sbjct: 3 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVE 62
Query: 83 KNKVCLKGGLKTPVGGGV------SSLNVQLRKELDLYAALVNCFNLPGL----PTRHQ- 131
+ + L G + P G+ + + LRK DL+A L PGL P + +
Sbjct: 63 EAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEI 122
Query: 132 --NVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVT 189
VD++++RE T G Y G + + + +K ER+A+ AFE A RK V
Sbjct: 123 ARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEGAR-KRRKHVV 181
Query: 190 AVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYG 249
+V KAN++++ + + ++ EV YP + VD M LV P +FDV+VT N++G
Sbjct: 182 SVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFG 240
Query: 250 NLVSNTAAGIAGGTGVMPGAGNVGNEKVVE-----------QKKANPVALLLSSAMMLRH 298
+++S+ A+ + G G++P A V E + ANP A +LS+AMML H
Sbjct: 241 DILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGSAPDIAGKGIANPTAAILSAAMMLEH 300
Query: 299 -LQFPSFADRLETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANL 343
A ++E AV + + E DLGG T+ V+ +L
Sbjct: 301 AFGLVELARKVEDAVAKALLETP--PPDLGGSAGTEAFTATVLRHL 344
>pdb|2Y3Z|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Apo Enzyme
pdb|2Y40|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Mn
pdb|2Y40|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Mn
pdb|2Y41|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Ipm And Mn
pdb|2Y41|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Ipm And Mn
pdb|2Y42|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|C Chain C, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|D Chain D, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|4F7I|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|C Chain C, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|D Chain D, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
Length = 359
Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 101/343 (29%), Positives = 162/343 (47%), Gaps = 38/343 (11%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAP----IYFEKYEVHGDM-----KRVPQQVLDSIR 82
V ++PGDGIGP VT A +V+ A+ + +E + G + P+ +
Sbjct: 6 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVE 65
Query: 83 KNKVCLKGGLKTPVGGGV------SSLNVQLRKELDLYAALVNCFNLPGL----PTRHQ- 131
+ + L G + P G+ + + LRK DL+A L PGL P + +
Sbjct: 66 EAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEI 125
Query: 132 --NVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVT 189
VD++++RE T G Y G + + + +K ER+A+ AFE A RK V
Sbjct: 126 ARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEAAR-KRRKHVV 184
Query: 190 AVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYG 249
+V KAN++++ + + ++ EV YP + VD M LV P +FDV+VT N++G
Sbjct: 185 SVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFG 243
Query: 250 NLVSNTAAGIAGGTGVMPGAGNVGNEKVVE-----------QKKANPVALLLSSAMMLRH 298
+++S+ A+ + G G++P A V E + ANP A +LS+AMML H
Sbjct: 244 DILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGSAPDIAGKGIANPTAAILSAAMMLEH 303
Query: 299 -LQFPSFADRLETAVKRVISEEKYRTKDLGGGCTTQQIVDAVI 340
A ++E AV + + E DLGG T+ V+
Sbjct: 304 AFGLVELARKVEDAVAKALLETP--PPDLGGSAGTEAFTATVL 344
>pdb|1DPZ|A Chain A, Stucture Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd711
pdb|1DPZ|B Chain B, Stucture Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd711
Length = 349
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 102/344 (29%), Positives = 162/344 (47%), Gaps = 38/344 (11%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAP----IYFEKYEVHGDM-----KRVPQQVLDSIR 82
V ++PGDGIGP VT A +V+ A+ + +E + G + P+ +
Sbjct: 3 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVE 62
Query: 83 KNKVCLKGGLKTPVGGGV------SSLNVQLRKELDLYAALVNCFNLPGL----PTRHQ- 131
+ + L G + P G+ + + LRK DL+A L PGL P + +
Sbjct: 63 EAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEI 122
Query: 132 --NVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVT 189
VD++++RE T G Y G + + + +K ER+A+ AFE A RK V
Sbjct: 123 ARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFELAR-KRRKHVV 181
Query: 190 AVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYG 249
+V KAN++++ + + ++ EV YP + VD M LV P +FDV+VT N++G
Sbjct: 182 SVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFG 240
Query: 250 NLVSNTAAGIAGGTGVMPGAGNVGNEKVVE-----------QKKANPVALLLSSAMMLRH 298
+++S+ A+ + G G++P A V E + ANP A +LS+AMML H
Sbjct: 241 DILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGSAPDIAGKGIANPTAAILSAAMMLEH 300
Query: 299 -LQFPSFADRLETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIA 341
A ++E AV + + E DLGG T+ V A
Sbjct: 301 AFGLVELARKVEDAVAKALLETP--PPDLGGSAGTEAFTATVEA 342
>pdb|1DR8|A Chain A, Structure Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd177
pdb|1DR8|B Chain B, Structure Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd177
Length = 344
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 101/342 (29%), Positives = 161/342 (47%), Gaps = 38/342 (11%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAP----IYFEKYEVHGDM-----KRVPQQVLDSIR 82
V ++PGDGIGP VT A +V+ A+ + +E + G + P+ +
Sbjct: 3 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVE 62
Query: 83 KNKVCLKGGLKTPVGGGV------SSLNVQLRKELDLYAALVNCFNLPGL----PTRHQ- 131
+ + L G + P G+ + + LRK DL+A L PGL P + +
Sbjct: 63 EAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEI 122
Query: 132 --NVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVT 189
VD++++RE T G Y G + + + +K ER+A+ AFE A RK V
Sbjct: 123 ARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFELAR-KRRKHVV 181
Query: 190 AVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYG 249
+V KAN++++ + + ++ EV YP + VD M LV P +FDV+VT N++G
Sbjct: 182 SVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFG 240
Query: 250 NLVSNTAAGIAGGTGVMPGAGNVGNEKVVE-----------QKKANPVALLLSSAMMLRH 298
+++S+ A+ + G G++P A V E + ANP A +LS+AMML H
Sbjct: 241 DILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGSAPDIAGKGIANPTAAILSAAMMLEH 300
Query: 299 -LQFPSFADRLETAVKRVISEEKYRTKDLGGGCTTQQIVDAV 339
A ++E AV + + E DLGG T+ V
Sbjct: 301 AFGLVELARKVEDAVAKALLETP--PPDLGGSAGTEAFTATV 340
>pdb|1XAC|A Chain A, Chimera Isopropylmalate Dehydrogenase Between Bacillus
Subtilis (M) And Thermus Thermophilus (T) From
N-Terminal: 20% T Middle 20% M Residual 60% T, Mutated
At S82r. Low Temperature (100k) Structure.
pdb|1XAD|A Chain A, Chimera Isopropylmalate Dehydrogenase Between Bacillus
Subtilis (M) And Thermus Thermophilus (T) From
N-Terminal: 20% T Middle 20% M Residual 60% T, Mutated
At S82r. Low Temperature (150k) Structure
Length = 345
Score = 124 bits (310), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 105/350 (30%), Positives = 164/350 (46%), Gaps = 46/350 (13%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAP----IYFEKYEVHGDM-----KRVPQQVLDSIR 82
V ++PGDGIGP VT A +V+ A+ + +E + G + P+ +
Sbjct: 3 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVE 62
Query: 83 KNKVCLKGGLKTPVGGGVSSLN----------VQLRKELDLYAAL--VNCFNL--PGLPT 128
+ + L G VGG N + +RK+LDL+A L V F P
Sbjct: 63 EAEAVLLGS----VGGPKWDQNPRELRPEKGLLSIRKQLDLFANLRPVKVFESLSDASPL 118
Query: 129 RHQ---NVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYR 185
+ + NVD V++RE T G Y G + + + +K ER+A+ AFE A R
Sbjct: 119 KKEYIDNVDFVIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEAAR-KRR 177
Query: 186 KKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTP 245
K V +V KAN++++ + + ++ EV YP + VD M LV P +FDV+VT
Sbjct: 178 KHVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTG 236
Query: 246 NLYGNLVSNTAAGIAGGTGVMPGAGNVGNEKVVE-----------QKKANPVALLLSSAM 294
N++G+++S+ A+ + G G++P A V E + ANP A +LS+AM
Sbjct: 237 NIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGSAPDIAGKGIANPTAAILSAAM 296
Query: 295 MLRH-LQFPSFADRLETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANL 343
ML H A ++E AV + + E DLGG T+ V+ +L
Sbjct: 297 MLEHAFGLVELARKVEDAVAKALLETP--PPDLGGSAGTEAFTATVLRHL 344
>pdb|4IWH|A Chain A, Crystal Structure Of A 3-isopropylmalate Dehydrogenase
From Burkholderia Pseudomallei
pdb|4IWH|B Chain B, Crystal Structure Of A 3-isopropylmalate Dehydrogenase
From Burkholderia Pseudomallei
Length = 363
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 111/361 (30%), Positives = 172/361 (47%), Gaps = 57/361 (15%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAM-------HAPIYFEKYEVHGDMKRVPQQVLDSIRKN 84
+ ++PGDGIGP + N +V+ A+ HAP+ YE G +P L ++
Sbjct: 11 IAVLPGDGIGPEIVNEAVKVLNALDEKFELEHAPVGGAGYEASG--HPLPDATLALAKEA 68
Query: 85 KVCLKGGLKTPVGGGVSSLN---------VQLRKELDLYAALVNCFNLPGL-------PT 128
L G + SL + LRK L+L+A P L P
Sbjct: 69 DAILFGAVGD---WKYDSLERALRPEQAILGLRKHLELFANFRPAICYPQLVDASPLKPE 125
Query: 129 RHQNVDIVVIRENTEGEYSGLEHEVV-----PGVVESLKVITKFCSE----RIAKYAFEY 179
+DI+++RE Y G V P E T SE RIA AF+
Sbjct: 126 LVAGLDILIVRELNGDIYFGQPRGVRAAPDGPFAGEREGFDTMRYSEPEVRRIAHVAFQA 185
Query: 180 AYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQF 239
A KK+ +V K+N+++ + + + +V+ +Y ++ + + VDN MQL P+QF
Sbjct: 186 AQ-KRAKKLLSVDKSNVLETSQ-FWRDVMIDVSKEYADVELSHMYVDNAAMQLAKAPKQF 243
Query: 240 DVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGNVGNEK------------VVEQKKANPVA 287
DV+VT N++G+++S+ A+ + G G++P A N K + + ANP+A
Sbjct: 244 DVIVTGNMFGDILSDEASMLTGSIGMLPSASLDKNNKGLYEPSHGSAPDIAGKGIANPLA 303
Query: 288 LLLSSAMMLRH-LQFPSFADRLETAVKRVISEEKYRTKDLGG-GCT---TQQIVDAVIAN 342
+LS+AM+LR+ L ADR+E AVK V+ E+ YRT D+ GC T + DAV+A
Sbjct: 304 TILSAAMLLRYSLNRAEQADRIERAVKTVL-EQGYRTGDIATPGCRQVGTAAMGDAVVAA 362
Query: 343 L 343
L
Sbjct: 363 L 363
>pdb|3R8W|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
pdb|3R8W|B Chain B, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
pdb|3R8W|C Chain C, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
pdb|3R8W|D Chain D, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
Length = 405
Score = 117 bits (294), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 102/340 (30%), Positives = 169/340 (49%), Gaps = 53/340 (15%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHA----PIYFEKYEVHG---DMKRVP--QQVLDSIR 82
+TL+PGDGIGP V + + V++ + F + + G D+ VP ++ + + +
Sbjct: 45 ITLLPGDGIGPEVVSIAKNVLQQAGSLEGVEFNFREMPIGGAALDLVGVPLPEETISAAK 104
Query: 83 KNKVCLKGGLKTPVGGGVSSLN-----------VQLRKELDLYAALVNCFNLPGLPTRH- 130
++ L G + GG N +Q+R L ++A L LP L
Sbjct: 105 ESDAVLLGAI-----GGYKWDNNEKHLRPEKGLLQIRAALKVFANLRPATVLPQLVDAST 159
Query: 131 ------QNVDIVVIRENTEGEYSG-----LEHEVVPGVVESLKVITKFCSERIAKYAFEY 179
+ VD++V+RE T G Y G +E V + +V +RIA+ AFE
Sbjct: 160 LKREVAEGVDLMVVRELTGGIYFGEPRGIKTNENGEEVGFNTEVYAAHEIDRIARVAFET 219
Query: 180 AYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQF 239
A R K+ +V KAN+++ A L+ + +A++YP ++ + + VDN MQLV P+QF
Sbjct: 220 AR-KRRGKLCSVDKANVLE-ASILWRKRVTALASEYPDVELSHMYVDNAAMQLVRDPKQF 277
Query: 240 DVMVTPNLYGNLVSNTAAGIAGGTGVMPGAG------------NVGNEKVVEQKKANPVA 287
D +VT N++G+++S+ A+ I G G++P A + + Q KANP+A
Sbjct: 278 DTIVTNNIFGDILSDEASMITGSIGMLPSASLSDSGPGLFEPIHGSAPDIAGQDKANPLA 337
Query: 288 LLLSSAMMLRH-LQFPSFADRLETAVKRVISEEKYRTKDL 326
+LS+AM+L++ L A R+E AV V +RT D+
Sbjct: 338 TILSAAMLLKYGLGEEKAAKRIEDAV-LVALNNGFRTGDI 376
>pdb|1CNZ|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmonella
Typhimurium
pdb|1CNZ|B Chain B, 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmonella
Typhimurium
Length = 363
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 102/344 (29%), Positives = 161/344 (46%), Gaps = 48/344 (13%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRV---------PQQVLDSIR 82
+ ++PGDGIGP V +VM+A+ + H D+ + P+ ++
Sbjct: 7 IAVLPGDGIGPEVMAQALKVMDAVRSRFDMRITTSHYDVGGIAIDNHGHPLPKATVEGCE 66
Query: 83 KNKVCLKGGLKTPVGGGVSSLN-------VQLRKELDLYAALVNCFNLPGL----PTRHQ 131
+ L G + P + + + LRK L++ L GL P R
Sbjct: 67 QADAILFGSVGGPKWENLPPESQPERGALLPLRKHFKLFSNLRPAKLYQGLEAFCPLRAD 126
Query: 132 ----NVDIVVIRENTEGEYSGL-EHEVVPGVVE---SLKVITKFCSERIAKYAFEYAYLN 183
DI+ +RE T G Y G + G E +V +F ERIA+ AFE A
Sbjct: 127 IAANGFDILCVRELTGGIYFGQPKGREGSGQYEKAFDTEVYHRFEIERIARIAFESAR-K 185
Query: 184 YRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMV 243
R+KVT++ KAN+++ + L+ E +VA YP ++ + +DN MQL+ P QFDV++
Sbjct: 186 RRRKVTSIDKANVLQ-SSILWREIVNDVAKTYPDVELAHMYIDNATMQLIKDPSQFDVLL 244
Query: 244 TPNLYGNLVSNTAAGIAGGTGVMPGAGNVGNEK--------------VVEQKKANPVALL 289
NL+G+++S+ A I G G++P A NE+ + + ANP+A +
Sbjct: 245 CSNLFGDILSDECAMITGSMGMLPSASL--NEQGFGLYEPAGGSAPDIAGKNIANPIAQI 302
Query: 290 LSSAMMLRH-LQFPSFADRLETAVKRVISEEKYRTKDLGGGCTT 332
LS A++LR+ L A +E A+ R + EE RT DL G
Sbjct: 303 LSLALLLRYSLDANDAATAIEQAINRAL-EEGVRTGDLARGAAA 345
>pdb|1CM7|A Chain A, 3-Isopropylmalate Dehydrogenase From Escherichia Coli
pdb|1CM7|B Chain B, 3-Isopropylmalate Dehydrogenase From Escherichia Coli
Length = 363
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 104/344 (30%), Positives = 162/344 (47%), Gaps = 48/344 (13%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMH----APIYFEKYEVHGDM-----KRVPQQVLDSIR 82
+ ++PGDGIGP V +V++A+ I Y+V G + +P ++
Sbjct: 7 IAVLPGDGIGPEVMTQALKVLDAVRNRFAMRITTSHYDVGGAAIDNHGQPLPPATVEGCE 66
Query: 83 KNKVCLKGGLKTPVGGGVSSLN-------VQLRKELDLYAALVNCFNLPGL----PTRHQ 131
+ L G + P + + LRK L++ L GL P R
Sbjct: 67 QADAVLFGSVGGPKWEHLPPDQQPERGALLPLRKHFKLFSNLRPAKLYQGLEAFCPLRAD 126
Query: 132 ----NVDIVVIRENTEGEYSGL-EHEVVPGVVE---SLKVITKFCSERIAKYAFEYAYLN 183
DI+ +RE T G Y G + G E +V +F ERIA+ AFE A
Sbjct: 127 IAANGFDILCVRELTGGIYFGQPKGREGSGQYEKAFDTEVYHRFEIERIARIAFESAR-K 185
Query: 184 YRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMV 243
R KVT++ KAN+++ + L+ E E+AT+YP ++ + +DN MQL+ P QFDV++
Sbjct: 186 RRHKVTSIDKANVLQ-SSILWREIVNEIATEYPDVELAHMYIDNATMQLIKDPSQFDVLL 244
Query: 244 TPNLYGNLVSNTAAGIAGGTGVMPGAGNVGNEK--------------VVEQKKANPVALL 289
NL+G+++S+ A I G G++P A NE+ + + ANP+A +
Sbjct: 245 CSNLFGDILSDECAMITGSMGMLPSASL--NEQGFGLYEPAGGSAPDIAGKNIANPIAQI 302
Query: 290 LSSAMMLRH-LQFPSFADRLETAVKRVISEEKYRTKDLGGGCTT 332
LS A++LR+ L A +E A+ R + EE RT DL G
Sbjct: 303 LSLALLLRYSLDADDAACAIERAINRAL-EEGIRTGDLARGAAA 345
>pdb|3VMK|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Benthica
Db21 Mt-2
pdb|3VMK|B Chain B, 3-Isopropylmalate Dehydrogenase From Shewanella Benthica
Db21 Mt-2
Length = 375
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 101/335 (30%), Positives = 154/335 (45%), Gaps = 57/335 (17%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHA----PIYFEKYEVHGDMKR-----VPQQVLDSIR 82
+ ++ GDGIGP V +V+ A+ I + +Y+V G +P+ L
Sbjct: 16 IAVLAGDGIGPEVMAEARKVLAAVEKRFDLSIEYSEYDVGGAAIDNHGCPLPEATLKGCE 75
Query: 83 KNKVCLKGGLKTPVGGGVSSLN-------VQLRKELDLYAALVNCFNLPGL----PTR-- 129
L G + P + + + LR +L+ + PGL P R
Sbjct: 76 AADAVLFGSVGGPKWEHLPPNDQPERGALLPLRGHFELFCNMRPAKLHPGLEHMSPLRSD 135
Query: 130 --HQNVDIVVIRENTEGEY---------SGLEHEVVPGVVESLKVITKFCSERIAKYAFE 178
+ DI+ +RE T G Y G E + S K I RIAK AFE
Sbjct: 136 ISEKGFDILCVRELTGGIYFGKPKGRQGEGENEEAFDTMRYSRKEI-----RRIAKIAFE 190
Query: 179 YAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQ 238
A RKKVT+V KAN++ + L+ E EVA YP ++ I +DN MQL+ +P +
Sbjct: 191 SAQ-GRRKKVTSVDKANVLACSV-LWREVVEEVAKDYPDVELEHIYIDNATMQLLRRPNE 248
Query: 239 FDVMVTPNLYGNLVSNTAAGIAGGTGVM--------------PGAGNVGNEKVVEQKKAN 284
FDVM+ NL+G++VS+ A + G G++ P G+ + + Q AN
Sbjct: 249 FDVMLCSNLFGDIVSDEIAMLTGSMGLLASISMNSQGFGMYEPAGGSAPD--IAGQGIAN 306
Query: 285 PVALLLSSAMMLRH-LQFPSFADRLETAVKRVISE 318
PVA +LS+A++LRH L+ A +E AV + +S+
Sbjct: 307 PVAQILSAALLLRHSLKLEDAALAIEAAVSKALSD 341
>pdb|3VML|A Chain A, Chimera 3-Isopropylmalate Dehydrogenase Between Shewanella
Oneidensis Mr-1 (O) And Shewanella Benthica Db21 Mt-2
(M) From N-Terminal: 20% O Middle 70% M Residual 10% O
Length = 375
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 104/343 (30%), Positives = 159/343 (46%), Gaps = 58/343 (16%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAP----IYFEKYEVHGDMKR-----VPQQVLDSIR 82
+ ++ GDGIGP V +V++A+ A I + +Y+V G +P+ L
Sbjct: 16 IAVLAGDGIGPEVMAEARKVLKAVEARFGLNIEYTEYDVGGIAIDNHGCPLPEATLKGCE 75
Query: 83 KNKVCLKGGLKTPVGGGVSSLN-------VQLRKELDLYAALVNCFNLPGL----PTR-- 129
L G + P + + + LR +L+ + PGL P R
Sbjct: 76 AADAVLFGSVGGPKWEHLPPNDQPERGALLPLRGHFELFCNMRPAKLHPGLEHMSPLRSD 135
Query: 130 --HQNVDIVVIRENTEGEY---------SGLEHEVVPGVVESLKVITKFCSERIAKYAFE 178
+ DI+ +RE T G Y G E + S K I RIAK AFE
Sbjct: 136 ISEKGFDILCVRELTGGIYFGKPKGRQGEGENEEAFDTMRYSRKEI-----RRIAKIAFE 190
Query: 179 YAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQ 238
A RKKVT+V KAN++ + L+ E EVA YP ++ I +DN MQL+ +P +
Sbjct: 191 SAQ-GRRKKVTSVDKANVLACSV-LWREVVEEVAKDYPDVELEHIYIDNATMQLLRRPNE 248
Query: 239 FDVMVTPNLYGNLVSNTAAGIAGGTGVM--------------PGAGNVGNEKVVEQKKAN 284
FDVM+ NL+G++VS+ A + G G++ P G+ + + Q AN
Sbjct: 249 FDVMLCSNLFGDIVSDEIAMLTGSMGLLASISMNSQGFGMYEPAGGSAPD--IAGQGIAN 306
Query: 285 PVALLLSSAMMLRH-LQFPSFADRLETAVKRVISEEKYRTKDL 326
PVA +LS+A++LRH L+ A +E AV + ++ Y T +L
Sbjct: 307 PVAQILSAALLLRHSLKLEDAALAIEAAVSKALN-SGYLTGEL 348
>pdb|3VKZ|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At Atmospheric Pressure
pdb|3VL2|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 160 Mpa
pdb|3VL3|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 340 Mpa
pdb|3VL4|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 410 Mpa
pdb|3VL6|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 580 Mpa
pdb|3VL7|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 650 Mpa
pdb|3VMJ|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1
Length = 375
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 160/344 (46%), Gaps = 60/344 (17%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAP----IYFEKYEVHGDMKR-----VPQQVLDSIR 82
+ ++ GDGIGP V +V++A+ A I + +Y+V G +P+ L
Sbjct: 16 IAVLAGDGIGPEVMAEARKVLKAVEARFGLNIEYTEYDVGGIAIDNHGCPLPEATLKGCE 75
Query: 83 KNKVCLKGGLKTPVGGGVSSLNVQ--------LRKELDLYAALVNCFNLPGL----PTRH 130
L G + P + N Q LR +L+ L GL P R
Sbjct: 76 AADAILFGSVGGPKWEKLPP-NEQPERGALLPLRGHFELFCNLRPAKLHDGLEHMSPLRS 134
Query: 131 ----QNVDIVVIRENTEGEY---------SGLEHEVVPGVVESLKVITKFCSERIAKYAF 177
+ D++ +RE T G Y G E + S + I+ RIA+ AF
Sbjct: 135 DISARGFDVLCVRELTGGIYFGKPKGRQGEGESEEAFDTMRYSRREIS-----RIARIAF 189
Query: 178 EYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPE 237
E A RKKVT+V KAN++ + L+ + EVA +P ++ I +DN MQL+ +P+
Sbjct: 190 EAAR-GRRKKVTSVDKANVLACSV-LWRQVVEEVAVDFPDVELEHIYIDNATMQLLRRPD 247
Query: 238 QFDVMVTPNLYGNLVSNTAAGIAGGTGVM--------------PGAGNVGNEKVVEQKKA 283
+FDVM+ NL+G+++S+ A + G G++ P G+ + + + A
Sbjct: 248 EFDVMLCSNLFGDILSDEIAMLTGSMGLLSSASMNSTGFGLFEPAGGSAPD--IAGKGIA 305
Query: 284 NPVALLLSSAMMLRH-LQFPSFADRLETAVKRVISEEKYRTKDL 326
NP+A +LS+A+MLRH L+ A +E AV + ++ Y T +L
Sbjct: 306 NPIAQILSAALMLRHSLKQEEAASAIERAVTKALN-SGYLTGEL 348
>pdb|3UDU|A Chain A, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|B Chain B, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|C Chain C, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|D Chain D, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|E Chain E, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|F Chain F, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|G Chain G, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|H Chain H, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
Length = 361
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 99/352 (28%), Positives = 161/352 (45%), Gaps = 51/352 (14%)
Query: 32 VTLIPGDGIGPLVTNAVEQVM-----------EAMHAPIYFEKYEVHGDMKRVPQQVLDS 80
V ++ GDGIGPLV +++ E A I + +G + + L
Sbjct: 9 VAVLAGDGIGPLVMKEALKILTFIAQKYNFSFELNEAKIGGASIDAYG--VALSDETLKL 66
Query: 81 IRKNKVCLKGGLKTPVGGGV--------SSLNVQLRKELDLYAALVNCFNLPGL----PT 128
++ L G + P + +SL + LRK +L+A L C L P
Sbjct: 67 CEQSDAILFGSVGGPKWDNLPIDQRPERASL-LPLRKHFNLFANLRPCKIYESLTHASPL 125
Query: 129 RHQ----NVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNY 184
+++ VDI+ +RE T G Y G + ++ ++ TK ERIA+ AFE A +
Sbjct: 126 KNEIIQKGVDILCVRELTGGIYFG-KQDLGKESAYDTEIYTKKEIERIARIAFESARIR- 183
Query: 185 RKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVT 244
+KKV + KAN++ + L+ E VA Y I + VDN MQ+V P FDVM+
Sbjct: 184 KKKVHLIDKANVLA-SSILWREVVANVAKDYQDINLEYMYVDNAAMQIVKNPSIFDVMLC 242
Query: 245 PNLYGNLVSNTAAGI-------------AGGTGVMPGAGNVGNEKVVEQKKANPVALLLS 291
NL+G+++S+ A I G G+ AG + + ANP+A +LS
Sbjct: 243 SNLFGDILSDELAAINGSLGLLSSASLNDKGFGLYEPAGGSAPD-IAHLNIANPIAQILS 301
Query: 292 SAMMLRH-LQFPSFADRLETAVKRVISEEKYRTKDLGGGC--TTQQIVDAVI 340
+A+ML++ + A +E A+ +++ K TKDL T ++ D ++
Sbjct: 302 AALMLKYSFKEEQAAQDIENAISLALAQGKM-TKDLNAKSYLNTDEMGDCIL 352
>pdb|3UDO|A Chain A, Crystal Structure Of Putative Isopropylamlate
Dehydrogenase From Campylobacter Jejuni
Length = 361
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 94/334 (28%), Positives = 150/334 (44%), Gaps = 45/334 (13%)
Query: 32 VTLIPGDGIGPLVTNAVEQVME--AMHAPIYFEKYE-------VHGDMKRVPQQVLDSIR 82
V ++ GDGIGPLV +++ A FE E + + + L
Sbjct: 9 VAVLAGDGIGPLVXKEALKILTFIAQKYNFSFELNEAKIGGASIDAYGVALSDETLKLCE 68
Query: 83 KNKVCLKGGLKTPVGGGV--------SSLNVQLRKELDLYAALVNCFNLPGL----PTRH 130
++ L G + P + +SL + LRK +L+A L C L P ++
Sbjct: 69 QSDAILFGSVGGPKWDNLPIDQRPERASL-LPLRKHFNLFANLRPCKIYESLTHASPLKN 127
Query: 131 Q----NVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRK 186
+ VDI+ +RE T G Y G + ++ ++ TK ERIA+ AFE A + +K
Sbjct: 128 EIIQKGVDILCVRELTGGIYFG-KQDLGKESAYDTEIYTKKEIERIARIAFESARIR-KK 185
Query: 187 KVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPN 246
KV + KAN++ + L+ E VA Y I VDN Q+V P FDV + N
Sbjct: 186 KVHLIDKANVLA-SSILWREVVANVAKDYQDINLEYXYVDNAAXQIVKNPSIFDVXLCSN 244
Query: 247 LYGNLVSNTAAGI-------------AGGTGVMPGAGNVGNEKVVEQKKANPVALLLSSA 293
L+G+++S+ A I G G+ AG + + ANP+A +LS+A
Sbjct: 245 LFGDILSDELAAINGSLGLLSSASLNDKGFGLYEPAGGSAPD-IAHLNIANPIAQILSAA 303
Query: 294 MMLRH-LQFPSFADRLETAVKRVISEEKYRTKDL 326
+ L++ + A +E A+ +++ K TKDL
Sbjct: 304 LXLKYSFKEEQAAQDIENAISLALAQGK-XTKDL 336
>pdb|3VJ8|A Chain A, Crystal Structure Of The Human Squalene Synthase
pdb|3VJ9|A Chain A, Crystal Structure Of The Human Squalene Synthase
pdb|3VJA|A Chain A, Crystal Structure Of The Human Squalene Synthase
pdb|3VJA|B Chain B, Crystal Structure Of The Human Squalene Synthase
pdb|3VJB|A Chain A, Crystal Structure Of The Human Squalene Synthase
pdb|3VJB|B Chain B, Crystal Structure Of The Human Squalene Synthase
pdb|3VJB|C Chain C, Crystal Structure Of The Human Squalene Synthase
pdb|3VJB|D Chain D, Crystal Structure Of The Human Squalene Synthase
pdb|3VJB|E Chain E, Crystal Structure Of The Human Squalene Synthase
pdb|3VJB|F Chain F, Crystal Structure Of The Human Squalene Synthase
pdb|3VJC|A Chain A, Crystal Structure Of The Human Squalene Synthase In
Complex With Zaragozic Acid A
pdb|3VJC|B Chain B, Crystal Structure Of The Human Squalene Synthase In
Complex With Zaragozic Acid A
pdb|3VJC|C Chain C, Crystal Structure Of The Human Squalene Synthase In
Complex With Zaragozic Acid A
pdb|3VJC|D Chain D, Crystal Structure Of The Human Squalene Synthase In
Complex With Zaragozic Acid A
pdb|3VJC|E Chain E, Crystal Structure Of The Human Squalene Synthase In
Complex With Zaragozic Acid A
pdb|3VJC|F Chain F, Crystal Structure Of The Human Squalene Synthase In
Complex With Zaragozic Acid A
Length = 343
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 52/127 (40%), Gaps = 15/127 (11%)
Query: 186 KKVTAVHKAN-IMKLADGLFLES---CREVATKYPSI---------KYNEIIVDNCCMQL 232
KKV +H + + D F+ES R+V +P+I KY +I D C
Sbjct: 65 KKVPLLHNFHSFLYQPDWRFMESKEKDRQVLEDFPTISLEFRNLAEKYQTVIADICRRMG 124
Query: 233 VSKPEQFDVMVTPNLYGNLVSNTAAGIAG-GTGVMPGAGNVGNEKVVEQ-KKANPVALLL 290
+ E D VT + + AG+ G G + A + V E ++AN + L L
Sbjct: 125 IGMAEFLDKHVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDPLVGEDTERANSMGLFL 184
Query: 291 SSAMMLR 297
++R
Sbjct: 185 QKTNIIR 191
>pdb|3LEE|A Chain A, Crystal Structure Of The Human Squalene Synthase Complexed
With Bph- 652
pdb|3LEE|B Chain B, Crystal Structure Of The Human Squalene Synthase Complexed
With Bph- 652
pdb|3LEE|C Chain C, Crystal Structure Of The Human Squalene Synthase Complexed
With Bph- 652
pdb|3LEE|D Chain D, Crystal Structure Of The Human Squalene Synthase Complexed
With Bph- 652
pdb|3LEE|E Chain E, Crystal Structure Of The Human Squalene Synthase Complexed
With Bph- 652
pdb|3LEE|F Chain F, Crystal Structure Of The Human Squalene Synthase Complexed
With Bph- 652
pdb|3ASX|A Chain A, Human Squalene Synthase In Complex With
1-{4-[{4-Chloro-2-[(2-
Chlorophenyl)(Hydroxy)methyl]phenyl}(2,
2-Dimethylpropyl)amino]-4-
Oxobutanoyl}piperidine-3-Carboxylic Acid
pdb|3Q2Z|A Chain A, Human Squalene Synthase In Complex With
N-[(3r,5s)-7-Chloro-5-(2,3-
Dimethoxyphenyl)-1-Neopentyl-2-Oxo-1,2,3,5-Tetrahydro-4,
1- Benzoxazepine-3-Acetyl]-L-Aspartic Acid
pdb|3Q30|A Chain A, Human Squalene Synthase In Complex With
(2r,3r)-2-Carboxymethoxy-3-[5-
(2-Naphthalenyl)pentyl]aminocarbonyl-3-[5-(2-
Naphthalenyl) Pentyloxy]propionic Acid
pdb|3V66|A Chain A, Human Squalene Synthase In Complex With
2-(1-{2-[(4r,6s)-8-Chloro-6-
(2,3-Dimethoxyphenyl)-4h,6h-Pyrrolo[1,2-A][4,
1]benzoxazepin-4- Yl]acetyl}-4-Piperidinyl)acetic Acid
Length = 340
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 52/127 (40%), Gaps = 15/127 (11%)
Query: 186 KKVTAVHKAN-IMKLADGLFLES---CREVATKYPSI---------KYNEIIVDNCCMQL 232
KKV +H + + D F+ES R+V +P+I KY +I D C
Sbjct: 62 KKVPLLHNFHSFLYQPDWRFMESKEKDRQVLEDFPTISLEFRNLAEKYQTVIADICRRMG 121
Query: 233 VSKPEQFDVMVTPNLYGNLVSNTAAGIAG-GTGVMPGAGNVGNEKVVEQ-KKANPVALLL 290
+ E D VT + + AG+ G G + A + V E ++AN + L L
Sbjct: 122 IGMAEFLDKHVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDPLVGEDTERANSMGLFL 181
Query: 291 SSAMMLR 297
++R
Sbjct: 182 QKTNIIR 188
>pdb|1EZF|A Chain A, Crystal Structure Of Human Squalene Synthase
pdb|1EZF|B Chain B, Crystal Structure Of Human Squalene Synthase
pdb|1EZF|C Chain C, Crystal Structure Of Human Squalene Synthase
Length = 340
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 52/127 (40%), Gaps = 15/127 (11%)
Query: 186 KKVTAVHKAN-IMKLADGLFLES---CREVATKYPSI---------KYNEIIVDNCCMQL 232
KKV +H + + D F+ES R+V +P+I KY +I D C
Sbjct: 62 KKVPLLHNFHSFLYQPDWRFMESKEKDRQVLEDFPTISLEFRNLAEKYQTVIADICRRMG 121
Query: 233 VSKPEQFDVMVTPNLYGNLVSNTAAGIAG-GTGVMPGAGNVGNEKVVEQ-KKANPVALLL 290
+ E D VT + + AG+ G G + A + V E ++AN + L L
Sbjct: 122 IGMAEFLDKHVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDPLVGEDTERANSMGLFL 181
Query: 291 SSAMMLR 297
++R
Sbjct: 182 QKTNIIR 188
>pdb|2WSH|A Chain A, Structure Of Bacteriophage T4 Endoii E118a Mutant
pdb|2WSH|B Chain B, Structure Of Bacteriophage T4 Endoii E118a Mutant
pdb|2WSH|C Chain C, Structure Of Bacteriophage T4 Endoii E118a Mutant
pdb|2WSH|D Chain D, Structure Of Bacteriophage T4 Endoii E118a Mutant
Length = 143
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Query: 209 REVATKYPSIKYNEI-IVDNCCMQLVSKPEQFDVM 242
+E+AT+Y IKY E+ + DN ++ +S P +++V+
Sbjct: 9 KEIATEYSFIKYTELELDDNGSIKQLSIPNKYNVI 43
>pdb|1CM5|A Chain A, Crystal Structure Of C418a,C419a Mutant Of Pfl From E.Coli
pdb|1CM5|B Chain B, Crystal Structure Of C418a,C419a Mutant Of Pfl From E.Coli
Length = 759
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 16/98 (16%)
Query: 188 VTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSK------------ 235
++A+ A + + D L E+ +YP N+ VD+ + LV +
Sbjct: 536 LSAIKYAKVKPIRDEDGLAIDFEIEGEYPQFGNNDPRVDDLAVDLVERFMKKIQKLHTYR 595
Query: 236 ---PEQFDVMVTPN-LYGNLVSNTAAGIAGGTGVMPGA 269
P Q + +T N +YG NT G G PGA
Sbjct: 596 DAIPTQSVLTITSNVVYGKKTGNTPDGRRAGAPFGPGA 633
>pdb|2PFL|A Chain A, Crystal Structure Of Pfl From E.Coli
pdb|2PFL|B Chain B, Crystal Structure Of Pfl From E.Coli
pdb|3PFL|A Chain A, Crystal Structure Of Pfl From E.coli In Complex With
Substrate Analogue Oxamate
pdb|3PFL|B Chain B, Crystal Structure Of Pfl From E.coli In Complex With
Substrate Analogue Oxamate
pdb|1H16|A Chain A, Pyruvate Formate-Lyase (E.Coli) In Complex With Pyruvate
And Coa
pdb|1H17|A Chain A, Pyruvate Formate-Lyase (E.Coli) In Complex With Coa And
The Substrate Analog Oxamate
pdb|1H18|A Chain A, Pyruvate Formate-Lyase (E.Coli) In Complex With Pyruvate
pdb|1H18|B Chain B, Pyruvate Formate-Lyase (E.Coli) In Complex With Pyruvate
pdb|1MZO|A Chain A, Crystal Structure Of Pyruvate Formate-Lyase With Pyruvate
pdb|1MZO|B Chain B, Crystal Structure Of Pyruvate Formate-Lyase With Pyruvate
Length = 759
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 16/98 (16%)
Query: 188 VTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSK------------ 235
++A+ A + + D L E+ +YP N+ VD+ + LV +
Sbjct: 536 LSAIKYAKVKPIRDEDGLAIDFEIEGEYPQFGNNDPRVDDLAVDLVERFMKKIQKLHTYR 595
Query: 236 ---PEQFDVMVTPN-LYGNLVSNTAAGIAGGTGVMPGA 269
P Q + +T N +YG NT G G PGA
Sbjct: 596 DAIPTQSVLTITSNVVYGKKTGNTPDGRRAGAPFGPGA 633
>pdb|3EJ6|A Chain A, Neurospora Crassa Catalase-3 Crystal Structure
pdb|3EJ6|B Chain B, Neurospora Crassa Catalase-3 Crystal Structure
pdb|3EJ6|C Chain C, Neurospora Crassa Catalase-3 Crystal Structure
pdb|3EJ6|D Chain D, Neurospora Crassa Catalase-3 Crystal Structure
Length = 688
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 138 IRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIA 173
+ E G Y+G + EV+ GV E LKV KF ER A
Sbjct: 648 VEEKEAGVYAGAQDEVIKGVEEGLKVF-KFL-ERFA 681
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,954,854
Number of Sequences: 62578
Number of extensions: 408467
Number of successful extensions: 1244
Number of sequences better than 100.0: 70
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 952
Number of HSP's gapped (non-prelim): 81
length of query: 344
length of database: 14,973,337
effective HSP length: 100
effective length of query: 244
effective length of database: 8,715,537
effective search space: 2126591028
effective search space used: 2126591028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)