Query 019198
Match_columns 344
No_of_seqs 144 out of 1277
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 07:30:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019198.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019198hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0473 LeuB Isocitrate/isopro 100.0 3E-113 7E-118 823.7 33.1 316 28-344 2-346 (348)
2 PLN00123 isocitrate dehydrogen 100.0 2E-112 4E-117 831.3 38.4 335 9-344 10-360 (360)
3 PRK08997 isocitrate dehydrogen 100.0 1E-110 2E-115 814.8 36.4 314 29-343 2-334 (334)
4 PLN00118 isocitrate dehydrogen 100.0 1E-110 2E-115 822.4 34.1 315 28-343 40-372 (372)
5 KOG0785 Isocitrate dehydrogena 100.0 2E-111 4E-116 795.1 25.0 342 1-343 5-365 (365)
6 PRK14025 multifunctional 3-iso 100.0 4E-109 1E-113 802.1 35.6 308 30-343 2-330 (330)
7 TIGR00175 mito_nad_idh isocitr 100.0 6E-109 1E-113 803.9 35.7 316 27-343 1-333 (333)
8 PRK08194 tartrate dehydrogenas 100.0 8E-108 2E-112 799.7 34.9 312 29-343 3-349 (352)
9 TIGR02089 TTC tartrate dehydro 100.0 2E-107 4E-112 797.6 34.4 312 29-343 3-352 (352)
10 PRK09222 isocitrate dehydrogen 100.0 1E-106 2E-111 813.6 35.3 314 28-343 3-341 (482)
11 PRK03437 3-isopropylmalate deh 100.0 4E-106 9E-111 785.6 34.7 309 28-343 3-344 (344)
12 TIGR02924 ICDH_alpha isocitrat 100.0 3E-106 7E-111 807.6 34.1 311 31-343 2-337 (473)
13 PLN02329 3-isopropylmalate deh 100.0 3E-105 7E-110 790.4 34.1 311 29-343 46-401 (409)
14 TIGR00169 leuB 3-isopropylmala 100.0 2E-104 4E-109 775.8 34.7 309 31-343 1-349 (349)
15 PRK06451 isocitrate dehydrogen 100.0 1E-103 2E-108 782.6 34.0 312 29-343 24-408 (412)
16 TIGR02088 LEU3_arch isopropylm 100.0 2E-103 4E-108 761.9 33.9 304 32-340 1-322 (322)
17 PRK00772 3-isopropylmalate deh 100.0 3E-103 6E-108 769.4 34.8 310 29-343 2-355 (358)
18 PRK07006 isocitrate dehydrogen 100.0 1E-102 2E-107 776.0 34.3 313 28-343 19-409 (409)
19 TIGR00183 prok_nadp_idh isocit 100.0 1E-101 2E-106 771.1 33.7 310 32-343 29-416 (416)
20 PRK07362 isocitrate dehydrogen 100.0 2E-101 4E-106 766.7 33.1 310 32-343 31-474 (474)
21 KOG0784 Isocitrate dehydrogena 100.0 7E-101 2E-105 730.8 29.5 329 15-344 28-373 (375)
22 PF00180 Iso_dh: Isocitrate/is 100.0 4E-100 9E-105 748.0 22.7 306 31-339 1-348 (348)
23 PRK08299 isocitrate dehydrogen 100.0 9.4E-93 2E-97 700.3 33.6 306 29-343 7-398 (402)
24 PLN00103 isocitrate dehydrogen 100.0 7.5E-91 1.6E-95 688.2 33.0 309 29-344 9-407 (410)
25 TIGR00127 nadp_idh_euk isocitr 100.0 4.6E-86 1E-90 653.3 33.0 310 29-343 6-403 (409)
26 PTZ00435 isocitrate dehydrogen 100.0 5.8E-85 1.3E-89 646.1 32.8 311 28-343 8-406 (413)
27 PLN03065 isocitrate dehydrogen 100.0 4.1E-84 8.9E-89 647.3 33.9 307 29-343 77-473 (483)
28 KOG0786 3-isopropylmalate dehy 100.0 1.2E-81 2.7E-86 580.4 22.8 313 28-343 3-358 (363)
29 COG0538 Icd Isocitrate dehydro 100.0 5.6E-80 1.2E-84 596.0 29.6 315 28-344 17-407 (407)
30 PLN00096 isocitrate dehydrogen 100.0 7E-67 1.5E-71 511.6 29.1 304 33-343 2-393 (393)
31 KOG1526 NADP-dependent isocitr 100.0 2.4E-37 5.2E-42 292.2 20.4 310 28-343 17-413 (422)
32 PRK03371 pdxA 4-hydroxythreoni 79.8 1.6 3.4E-05 43.4 3.0 123 163-296 177-323 (326)
33 PRK03743 pdxA 4-hydroxythreoni 78.9 1.6 3.5E-05 43.3 2.9 124 163-297 178-325 (332)
34 PRK00232 pdxA 4-hydroxythreoni 78.7 1.7 3.7E-05 43.3 2.9 124 163-297 178-325 (332)
35 PRK02746 pdxA 4-hydroxythreoni 77.8 1.8 3.9E-05 43.3 2.8 126 163-297 180-338 (345)
36 PF03971 IDH: Monomeric isocit 77.6 71 0.0015 34.5 14.3 174 150-327 443-648 (735)
37 TIGR00557 pdxA 4-hydroxythreon 76.5 2.2 4.8E-05 42.2 3.0 121 163-296 170-317 (320)
38 PF04166 PdxA: Pyridoxal phosp 70.4 3 6.6E-05 40.9 2.3 121 163-294 151-296 (298)
39 PF12847 Methyltransf_18: Meth 66.5 19 0.00042 28.3 6.0 62 174-246 14-78 (112)
40 COG1995 PdxA Pyridoxal phospha 66.5 4.3 9.4E-05 40.3 2.5 24 274-297 301-324 (332)
41 PRK01909 pdxA 4-hydroxythreoni 64.6 5.1 0.00011 39.9 2.6 124 163-297 173-321 (329)
42 PRK05312 pdxA 4-hydroxythreoni 63.8 5.4 0.00012 39.8 2.6 123 163-297 182-330 (336)
43 TIGR00178 monomer_idh isocitra 63.6 1E+02 0.0023 33.3 11.9 152 165-320 462-645 (741)
44 cd07186 CofD_like LPPG:FO 2-ph 62.0 69 0.0015 31.6 9.9 105 72-177 172-302 (303)
45 PF03602 Cons_hypoth95: Conser 60.6 29 0.00064 31.3 6.6 67 175-246 56-122 (183)
46 PRK03946 pdxA 4-hydroxythreoni 59.8 7.1 0.00015 38.5 2.6 122 163-297 158-302 (307)
47 PTZ00435 isocitrate dehydrogen 59.4 15 0.00032 37.8 4.9 24 132-155 127-150 (413)
48 cd06308 PBP1_sensor_kinase_lik 56.0 85 0.0018 28.5 9.1 62 184-246 121-190 (270)
49 TIGR02069 cyanophycinase cyano 55.1 56 0.0012 31.0 7.8 62 29-91 28-90 (250)
50 cd00293 USP_Like Usp: Universa 52.6 1.1E+02 0.0023 23.7 8.9 80 166-246 9-101 (130)
51 cd06320 PBP1_allose_binding Pe 46.9 1.5E+02 0.0032 26.9 9.1 72 173-246 108-190 (275)
52 cd06322 PBP1_ABC_sugar_binding 46.4 1.7E+02 0.0037 26.3 9.4 72 175-248 109-189 (267)
53 PRK11041 DNA-binding transcrip 45.8 86 0.0019 29.1 7.5 65 27-94 33-102 (309)
54 cd06323 PBP1_ribose_binding Pe 45.1 1.5E+02 0.0032 26.6 8.7 78 166-246 104-189 (268)
55 PRK15490 Vi polysaccharide bio 43.8 92 0.002 33.5 8.0 110 157-269 164-311 (578)
56 cd06270 PBP1_GalS_like Ligand 42.8 1.3E+02 0.0029 27.1 8.1 50 40-92 13-64 (268)
57 PRK07742 phosphate butyryltran 42.4 3.3E+02 0.0072 26.4 17.9 208 28-267 14-265 (299)
58 TIGR00853 pts-lac PTS system, 42.4 1.1E+02 0.0024 24.6 6.6 56 28-91 2-58 (95)
59 TIGR01501 MthylAspMutase methy 42.1 69 0.0015 27.8 5.6 57 29-94 3-63 (134)
60 TIGR00651 pta phosphate acetyl 41.1 2.1E+02 0.0046 28.0 9.5 98 165-262 157-269 (303)
61 PRK12862 malic enzyme; Reviewe 40.3 1.6E+02 0.0035 32.7 9.4 99 163-261 608-720 (763)
62 KOG1014 17 beta-hydroxysteroid 40.3 53 0.0011 32.6 5.2 44 175-227 65-108 (312)
63 cd02072 Glm_B12_BD B12 binding 40.2 79 0.0017 27.2 5.7 57 30-95 2-62 (128)
64 TIGR00127 nadp_idh_euk isocitr 38.6 24 0.00051 36.2 2.6 23 132-154 124-146 (409)
65 PRK13606 LPPG:FO 2-phospho-L-l 38.5 32 0.0007 33.9 3.4 20 72-91 174-193 (303)
66 cd06277 PBP1_LacI_like_1 Ligan 38.5 1.6E+02 0.0034 26.7 7.9 50 40-92 16-67 (268)
67 cd01545 PBP1_SalR Ligand-bindi 38.3 2.1E+02 0.0046 25.6 8.7 52 40-93 13-66 (270)
68 cd06305 PBP1_methylthioribose_ 37.3 2.1E+02 0.0045 25.8 8.5 58 32-92 2-64 (273)
69 cd06294 PBP1_ycjW_transcriptio 36.8 2.4E+02 0.0051 25.3 8.7 75 171-246 108-191 (270)
70 COG1597 LCB5 Sphingosine kinas 36.6 1.7E+02 0.0036 28.5 8.1 73 228-327 50-126 (301)
71 PRK02746 pdxA 4-hydroxythreoni 36.0 36 0.00079 34.1 3.4 21 29-49 9-31 (345)
72 cd06280 PBP1_LacI_like_4 Ligan 35.8 1.2E+02 0.0026 27.4 6.6 76 170-247 100-181 (263)
73 PRK07232 bifunctional malic en 35.2 2.6E+02 0.0055 31.2 9.9 99 165-263 602-714 (752)
74 TIGR02469 CbiT precorrin-6Y C5 35.1 1.5E+02 0.0032 23.3 6.4 66 175-250 33-100 (124)
75 PF00532 Peripla_BP_1: Peripla 35.0 1.2E+02 0.0027 28.6 6.8 71 173-246 106-188 (279)
76 PRK13054 lipid kinase; Reviewe 34.2 1.1E+02 0.0024 29.3 6.4 79 186-269 4-93 (300)
77 cd06309 PBP1_YtfQ_like Peripla 33.7 2.1E+02 0.0044 26.0 7.9 76 171-248 108-195 (273)
78 cd06287 PBP1_LacI_like_8 Ligan 33.5 2.8E+02 0.006 25.6 8.8 42 42-91 23-64 (269)
79 cd06300 PBP1_ABC_sugar_binding 33.5 3.3E+02 0.0072 24.5 9.2 74 173-248 111-195 (272)
80 cd06313 PBP1_ABC_sugar_binding 33.4 2.4E+02 0.0051 25.9 8.3 49 42-93 15-65 (272)
81 PRK10499 PTS system N,N'-diace 33.0 1.7E+02 0.0036 24.1 6.4 54 30-91 4-58 (106)
82 cd01574 PBP1_LacI Ligand-bindi 32.6 2.9E+02 0.0064 24.6 8.6 52 41-94 14-67 (264)
83 cd06271 PBP1_AglR_RafR_like Li 32.4 2.3E+02 0.005 25.3 7.9 51 38-92 15-68 (268)
84 cd06311 PBP1_ABC_sugar_binding 32.4 3.2E+02 0.0069 24.7 8.9 69 174-246 114-193 (274)
85 cd06288 PBP1_sucrose_transcrip 32.4 2.3E+02 0.005 25.4 7.9 74 171-246 102-185 (269)
86 COG1995 PdxA Pyridoxal phospha 31.6 52 0.0011 32.8 3.6 25 29-56 3-29 (332)
87 PRK10310 PTS system galactitol 31.4 1.8E+02 0.0039 23.2 6.2 55 29-91 2-58 (94)
88 cd06290 PBP1_LacI_like_9 Ligan 31.2 1.7E+02 0.0036 26.3 6.8 52 39-93 12-65 (265)
89 KOG0189 Phosphoadenosine phosp 31.1 1.2E+02 0.0025 28.8 5.5 60 177-240 62-123 (261)
90 COG2838 Icd Monomeric isocitra 30.8 5.3E+02 0.011 27.6 10.7 156 161-320 460-647 (744)
91 PRK03743 pdxA 4-hydroxythreoni 30.8 41 0.00089 33.6 2.8 20 30-49 4-25 (332)
92 PF07820 TraC: TraC-like prote 30.5 62 0.0013 26.4 3.3 38 166-216 23-60 (92)
93 cd06286 PBP1_CcpB_like Ligand- 30.4 1.8E+02 0.0039 26.1 6.8 51 40-93 13-65 (260)
94 cd05564 PTS_IIB_chitobiose_lic 30.0 1.8E+02 0.0038 23.3 6.0 53 31-91 1-54 (96)
95 cd06303 PBP1_LuxPQ_Quorum_Sens 29.8 4.1E+02 0.009 24.3 9.3 62 183-246 129-198 (280)
96 PRK01909 pdxA 4-hydroxythreoni 29.5 46 0.00099 33.2 2.9 21 29-49 5-27 (329)
97 cd01536 PBP1_ABC_sugar_binding 29.5 3.5E+02 0.0075 23.9 8.5 71 175-246 109-189 (267)
98 cd06273 PBP1_GntR_like_1 This 28.9 2.8E+02 0.006 24.9 7.8 24 38-61 11-34 (268)
99 PF00731 AIRC: AIR carboxylase 28.8 2.2E+02 0.0047 25.2 6.7 58 31-92 2-64 (150)
100 COG0655 WrbA Multimeric flavod 28.8 2E+02 0.0044 26.0 6.8 71 38-113 13-100 (207)
101 cd01537 PBP1_Repressors_Sugar_ 28.6 3.3E+02 0.0071 23.8 8.1 75 172-247 105-187 (264)
102 PF05542 DUF760: Protein of un 28.5 84 0.0018 25.0 3.7 46 250-301 28-74 (86)
103 PF03358 FMN_red: NADPH-depend 28.4 1.9E+02 0.0042 24.2 6.3 77 30-113 1-95 (152)
104 PRK12861 malic enzyme; Reviewe 27.5 4.2E+02 0.0092 29.6 10.0 98 165-262 611-722 (764)
105 PF00582 Usp: Universal stress 27.4 90 0.002 24.4 3.8 27 165-192 11-37 (140)
106 cd02975 PfPDO_like_N Pyrococcu 27.1 2.3E+02 0.0051 23.0 6.3 56 169-227 7-63 (113)
107 TIGR02709 branched_ptb branche 27.1 5.9E+02 0.013 24.7 11.8 128 165-297 125-270 (271)
108 cd06293 PBP1_LacI_like_11 Liga 26.8 3.5E+02 0.0075 24.4 8.1 57 32-91 2-63 (269)
109 PF01547 SBP_bac_1: Bacterial 26.7 1.4E+02 0.0031 27.1 5.6 42 203-244 9-57 (315)
110 PRK00232 pdxA 4-hydroxythreoni 26.6 54 0.0012 32.8 2.8 21 29-49 4-26 (332)
111 cd06272 PBP1_hexuronate_repres 26.4 2.7E+02 0.0059 25.0 7.3 46 40-92 13-60 (261)
112 cd06321 PBP1_ABC_sugar_binding 26.3 4.8E+02 0.01 23.4 9.1 79 165-247 103-190 (271)
113 PRK03946 pdxA 4-hydroxythreoni 26.2 47 0.001 32.8 2.3 19 30-48 2-22 (307)
114 cd06063 H2MP_Cyano-H2up This g 25.7 1.1E+02 0.0023 26.4 4.2 45 37-89 13-57 (146)
115 PRK03371 pdxA 4-hydroxythreoni 25.5 52 0.0011 32.8 2.5 21 29-49 2-24 (326)
116 cd06267 PBP1_LacI_sugar_bindin 25.3 4.6E+02 0.01 22.9 8.7 73 173-246 104-185 (264)
117 TIGR01819 F420_cofD LPPG:FO 2- 25.0 30 0.00065 34.0 0.6 20 72-91 171-190 (297)
118 KOG3040 Predicted sugar phosph 24.6 2.4E+02 0.0051 26.9 6.4 85 171-256 125-217 (262)
119 PRK05312 pdxA 4-hydroxythreoni 24.5 61 0.0013 32.4 2.7 20 30-49 4-25 (336)
120 PF00175 NAD_binding_1: Oxidor 24.5 3.4E+02 0.0073 21.0 7.3 60 184-245 23-99 (109)
121 cd06285 PBP1_LacI_like_7 Ligan 24.2 2.9E+02 0.0064 24.8 7.1 75 171-246 100-183 (265)
122 KOG1494 NAD-dependent malate d 24.1 2.2E+02 0.0048 28.3 6.3 71 27-100 26-112 (345)
123 PRK00861 putative lipid kinase 23.9 2.1E+02 0.0046 27.3 6.3 80 186-269 3-90 (300)
124 PRK09701 D-allose transporter 23.6 5.7E+02 0.012 24.1 9.2 63 30-93 25-92 (311)
125 cd06274 PBP1_FruR Ligand bindi 23.4 3.3E+02 0.0072 24.4 7.3 51 40-93 13-65 (264)
126 PF14542 Acetyltransf_CG: GCN5 23.0 2.3E+02 0.005 21.8 5.2 39 168-217 39-77 (78)
127 cd06310 PBP1_ABC_sugar_binding 22.8 5.6E+02 0.012 23.0 8.9 60 31-92 1-66 (273)
128 cd01544 PBP1_GalR Ligand-bindi 22.7 4.1E+02 0.0089 24.1 7.8 44 38-90 16-59 (270)
129 PLN03065 isocitrate dehydrogen 22.3 44 0.00096 35.0 1.3 37 132-170 195-232 (483)
130 cd06312 PBP1_ABC_sugar_binding 22.2 5.2E+02 0.011 23.3 8.4 57 31-92 1-66 (271)
131 cd06282 PBP1_GntR_like_2 Ligan 22.1 3.8E+02 0.0083 23.8 7.4 21 172-192 103-123 (266)
132 cd06278 PBP1_LacI_like_2 Ligan 22.0 4.3E+02 0.0093 23.5 7.7 74 171-246 101-182 (266)
133 cd06284 PBP1_LacI_like_6 Ligan 22.0 5.3E+02 0.011 22.9 8.3 73 172-246 102-184 (267)
134 cd06062 H2MP_MemB-H2up Endopep 22.0 1.6E+02 0.0035 25.2 4.6 46 37-89 13-58 (146)
135 TIGR02329 propionate_PrpR prop 21.9 2.3E+02 0.0049 30.0 6.5 110 202-320 13-146 (526)
136 cd00518 H2MP Hydrogenase speci 21.8 1.1E+02 0.0025 25.8 3.6 45 37-89 12-56 (139)
137 cd06325 PBP1_ABC_uncharacteriz 21.8 4.6E+02 0.01 23.6 7.9 67 175-248 119-194 (281)
138 PRK00107 gidB 16S rRNA methylt 21.7 4E+02 0.0087 23.9 7.3 60 175-246 59-120 (187)
139 PRK10401 DNA-binding transcrip 21.7 3.1E+02 0.0068 26.1 7.0 88 174-265 165-261 (346)
140 PRK10727 DNA-binding transcrip 21.4 3.2E+02 0.007 25.9 7.1 20 228-247 227-246 (343)
141 KOG3877 NADH:ubiquinone oxidor 21.3 91 0.002 30.9 3.1 45 185-230 70-115 (393)
142 PRK10014 DNA-binding transcrip 21.2 3.7E+02 0.008 25.4 7.4 20 228-247 233-252 (342)
143 cd06289 PBP1_MalI_like Ligand- 21.0 5.2E+02 0.011 22.9 8.0 75 172-247 104-187 (268)
144 TIGR02370 pyl_corrinoid methyl 20.9 2.3E+02 0.005 25.6 5.6 75 26-110 83-162 (197)
145 cd02070 corrinoid_protein_B12- 20.8 2.2E+02 0.0048 25.7 5.5 74 27-110 82-160 (201)
146 COG0041 PurE Phosphoribosylcar 20.7 6E+02 0.013 22.9 7.8 61 31-95 4-69 (162)
147 cd06275 PBP1_PurR Ligand-bindi 20.5 2.8E+02 0.0062 24.8 6.2 19 228-246 168-186 (269)
148 cd01988 Na_H_Antiporter_C The 20.5 1.3E+02 0.0027 24.0 3.5 28 167-195 10-37 (132)
149 PRK10466 hybD hydrogenase 2 ma 20.5 1.8E+02 0.0039 25.5 4.7 48 38-92 16-64 (164)
150 cd06319 PBP1_ABC_sugar_binding 20.3 6.3E+02 0.014 22.6 9.3 80 165-246 103-193 (277)
151 cd06212 monooxygenase_like The 20.2 4.5E+02 0.0098 23.6 7.5 35 185-221 131-165 (232)
152 TIGR03863 PQQ_ABC_bind ABC tra 20.2 2.5E+02 0.0054 27.6 6.1 101 160-269 107-224 (347)
153 PRK08051 fre FMN reductase; Va 20.0 6.3E+02 0.014 22.9 8.4 37 185-223 130-166 (232)
No 1
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.3e-113 Score=823.70 Aligned_cols=316 Identities=46% Similarity=0.689 Sum_probs=300.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHcC---CCeeEEEEEeeCC-----CCCCcHHHHHHHHhcCeEEEccccCCCC--
Q 019198 28 SPRAVTLIPGDGIGPLVTNAVEQVMEAMH---APIYFEKYEVHGD-----MKRVPQQVLDSIRKNKVCLKGGLKTPVG-- 97 (344)
Q Consensus 28 ~~~~I~vi~GDGIGpEV~~~~~~vl~~~~---~~i~~~~~~~g~~-----g~~lp~~~~~~~~~~da~l~G~~~~p~~-- 97 (344)
.+|+|+||||||||||||+++++||+++. ++++|+++++|++ |.++|+++++.|+++|++||||+++|..
T Consensus 2 ~~~~IavipGDGIGpEv~~~a~kVl~a~~~~~~~~e~~~~~~G~~~~~~~G~~lpeetl~~~~~~DaiL~Gavg~P~~~~ 81 (348)
T COG0473 2 KTYTIAVIPGDGIGPEVMAAALKVLEAAAEFGLDFEFEEAEVGGEAYDKHGEPLPEETLESLKKADAILFGAVGGPKWDP 81 (348)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCceEEEEehhhHHHHHHcCCCCCHHHHHHHHhCCEEEEcccCCCCCCC
Confidence 46999999999999999999999999986 8999999999976 9999999999999999999999999942
Q ss_pred --CCCCchhHHHHhhcCcEEEEEEeecCCCCCCCc-ccccEEEEecCCceeeecccce-eeCC-EEEEEEEeeHHHHHHH
Q 019198 98 --GGVSSLNVQLRKELDLYAALVNCFNLPGLPTRH-QNVDIVVIRENTEGEYSGLEHE-VVPG-VVESLKVITKFCSERI 172 (344)
Q Consensus 98 --~~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~-~~vDivIvREnteG~Y~g~e~~-~~~~-va~~~~~~Tr~~~eRi 172 (344)
.++++.++.|||+||||||+||+|++||+++++ +++|+|||||||||+|+|.++. ..++ +++++++|||+++|||
T Consensus 82 ~~~~~~~~ll~lRk~l~lyANlRP~k~~~~~k~~~~~~~D~viVREnTeG~Y~G~~~~~~~~~eva~~~~~~Tr~~~eRI 161 (348)
T COG0473 82 LPRPERGLLLALRKELDLYANLRPAKSLPGLKSPLVKGVDIVIVRENTEGLYFGEEGRILGGGEVAIDTKVITRKGSERI 161 (348)
T ss_pred CCCcccchHHHHHHhcCceeeeeecccCCCCCCccCCCccEEEEeeCCCccccCCCccccCCCeEEEEEEeccHHHHHHH
Confidence 367789999999999999999999999999988 6899999999999999999884 3344 8999999999999999
Q ss_pred HHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeeeHhHHHHHHHhCCCCccEEecCCcchhhh
Q 019198 173 AKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLV 252 (344)
Q Consensus 173 ar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~vD~~~~~Lv~~P~~fdVIvt~NlfGDIl 252 (344)
+|+|||+|++|++||||+|||+|||++|++||+++|+|++++||||+++|+|||+++||||++|++||||||+|||||||
T Consensus 162 ~r~AFe~A~~R~~kkvTsv~KaNVl~~s~~lwrev~~eva~~yPdv~~~~~~VD~aam~lV~~P~~FDViVt~NlFGDIL 241 (348)
T COG0473 162 ARFAFELARKRGRKKVTSVHKANVLKLSDGLWREVVEEVAKEYPDVELDHMYVDAAAMQLVRNPEQFDVIVTSNLFGDIL 241 (348)
T ss_pred HHHHHHHHHhhCCCceEEEehhhhhhhhhHHHHHHHHHHhhcCCCcchhHHhHHHHHHHHhhCccccCEEEEccchhHHH
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcCCCccccCcccCC--------------CcCccCcCCCChhHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHc
Q 019198 253 SNTAAGIAGGTGVMPGAGNVG--------------NEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISE 318 (344)
Q Consensus 253 SDlaa~l~GglGl~pSa~nig--------------APdiaGk~iANP~a~Ils~ammL~~lg~~~~a~~i~~Av~~~l~~ 318 (344)
||+||+|+|||||+||| |+| ||||||||||||+|+|||++|||+|+|..++|++|++||.++|++
T Consensus 242 SD~aa~l~GslGl~PSA-nig~~~~~~lfEPvHGSAPDIAGkgiANPiA~IlS~aMML~~~g~~~~A~~Ie~Av~~vl~~ 320 (348)
T COG0473 242 SDEAAALTGSLGLAPSA-NLGDERGPALFEPVHGSAPDIAGKGIANPIATILSAAMMLRHLGEKEAADAIENAVEKVLAE 320 (348)
T ss_pred HhHHHHhcCccccCccC-ccCCCCCCceeecCCCCcccccCCCccChHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHc
Confidence 99999999999999999 998 999999999999999999999999999999999999999999996
Q ss_pred CcccCCCCCCCCcHHHHHHHHHHhcC
Q 019198 319 EKYRTKDLGGGCTTQQIVDAVIANLD 344 (344)
Q Consensus 319 g~~~T~DlgG~~sT~e~~~aV~~~l~ 344 (344)
+..+|+||||+++|.||+|+|+++|+
T Consensus 321 ~g~~T~Dlgg~~~T~e~~d~I~~~l~ 346 (348)
T COG0473 321 GGIRTPDLGGNATTSEVGDAIAKALA 346 (348)
T ss_pred CCCCCcccCCCccHHHHHHHHHHHHh
Confidence 32599999999999999999999873
No 2
>PLN00123 isocitrate dehydrogenase (NAD+)
Probab=100.00 E-value=1.8e-112 Score=831.27 Aligned_cols=335 Identities=91% Similarity=1.368 Sum_probs=320.3
Q ss_pred hHhhhhhcccccCCCCCCCCceEEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHHHhcCeEE
Q 019198 9 LKSLIQTRSVTYMPRPGDGSPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRKNKVCL 88 (344)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~I~vi~GDGIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~~~~da~l 88 (344)
|-+-+|..+.+.+|.+.|+++++|+||||||||||||+++++||++++++++|+++++|.+|..+|++++++|+++|++|
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~I~vipGDGIGpEV~~~a~~vl~a~~~~i~~~~~~~G~~~~~lp~~~l~~~~~~da~L 89 (360)
T PLN00123 10 LGSKAQRRSVTYMPRPGDGAPRAVTLIPGDGIGPLVTGAVEQVMEAMHAPVYFERYEVHGDMKKVPEEVLESIRRNKVCL 89 (360)
T ss_pred hhhhhccCCcccCCcccCCCceEEEEECCCCccHHHHHHHHHHHHhCCCceEEEEEccCCCCccCCHHHHHHHHHCCEEE
Confidence 33445556777889999999999999999999999999999999999999999999999989999999999999999999
Q ss_pred EccccCCCCCCCCchhHHHHhhcCcEEEEEEeecCCCCCCCcccccEEEEecCCceeeecccceeeCCEEEEEEEeeHHH
Q 019198 89 KGGLKTPVGGGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFC 168 (344)
Q Consensus 89 ~G~~~~p~~~~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~~~vDivIvREnteG~Y~g~e~~~~~~va~~~~~~Tr~~ 168 (344)
|||+++|.+.+.+++++.||++||||+|+||||++||++++++++|++||||||||+|+|.|++..+++++++++|||++
T Consensus 90 ~Gavg~p~~~~~~s~~l~LR~~ldLyaNvRP~k~~pg~~~~~~~iD~viVREnteG~Y~g~~~~~~~g~~~~~~v~Tr~~ 169 (360)
T PLN00123 90 KGGLATPVGGGVSSLNVQLRKELDLFASLVNCFNLPGLPTRHENVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFC 169 (360)
T ss_pred EccccCCCCcCccchHHHHHHHcCCEEEEEEeecCCCCCCccCCCCEEEEEeCCCceeccceeecCCCceEEEEEecHHH
Confidence 99999997556778899999999999999999999999999999999999999999999999887778999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeeeHhHHHHHHHhCCCCccEEecCCcc
Q 019198 169 SERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLY 248 (344)
Q Consensus 169 ~eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~vD~~~~~Lv~~P~~fdVIvt~Nlf 248 (344)
+|||+|+||+||++|+|||||++||+|||+.|||||+++|+||+++||+|+++|+|||++|||||++|++||||||+|||
T Consensus 170 ~eRIar~AF~~A~~r~rkkVt~v~KaNvl~~t~glf~~~~~eva~eyPdV~~~~~~VDa~~~~Lv~~P~~fDViVt~Nlf 249 (360)
T PLN00123 170 SERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVAKKYPGIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLY 249 (360)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEECCccccchhhHHHHHHHHHHhhCCCceEeeeeHHHHHHHHhhCcccCcEEEEcCcc
Confidence 99999999999999888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhcCCCccccCcccCC--------------C--cCccCcCCCChhHHHHHHHHHhhhcCchHHHHHHHHHH
Q 019198 249 GNLVSNTAAGIAGGTGVMPGAGNVG--------------N--EKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAV 312 (344)
Q Consensus 249 GDIlSDlaa~l~GglGl~pSa~nig--------------A--PdiaGk~iANP~a~Ils~ammL~~lg~~~~a~~i~~Av 312 (344)
||||||+||+++||+||+||+ |+| | |||||||+|||+|||||++|||+|||++++|++|++||
T Consensus 250 GDILSDlaa~l~GglGl~pSa-nig~~~a~FEpvh~hGSA~~PdIAGk~iANP~a~IlS~amML~~lG~~~~A~~I~~AV 328 (360)
T PLN00123 250 GNLVANTAAGIAGGTGVMPGG-NVGADHAVFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAV 328 (360)
T ss_pred cchhhhHHHHhcCCcCccceE-eeCCCceEEEecccCCCcCCccccCCCccChHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 999999999999999999999 998 6 99999999999999999999999999999999999999
Q ss_pred HHHHHcCcccCCCCCCCCcHHHHHHHHHHhcC
Q 019198 313 KRVISEEKYRTKDLGGGCTTQQIVDAVIANLD 344 (344)
Q Consensus 313 ~~~l~~g~~~T~DlgG~~sT~e~~~aV~~~l~ 344 (344)
.+++++|+.+|+||||++||+||+|+|+++|+
T Consensus 329 ~~~l~~G~~~T~DlGG~~sT~e~~~ai~~~l~ 360 (360)
T PLN00123 329 KRVIAEGKYRTKDLGGSSTTQEVVDAVIANLD 360 (360)
T ss_pred HHHHHcCCccCcccCCCcCHHHHHHHHHHhhC
Confidence 99999995689999999999999999999874
No 3
>PRK08997 isocitrate dehydrogenase; Provisional
Probab=100.00 E-value=9.7e-111 Score=814.82 Aligned_cols=314 Identities=45% Similarity=0.745 Sum_probs=302.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEeeCC-----CCCCcHHHHHHHHhcCeEEEccccCCCCCCCCch
Q 019198 29 PRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD-----MKRVPQQVLDSIRKNKVCLKGGLKTPVGGGVSSL 103 (344)
Q Consensus 29 ~~~I~vi~GDGIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~-----g~~lp~~~~~~~~~~da~l~G~~~~p~~~~~~s~ 103 (344)
+++|+||||||||||||+++++||++++++++|+++++|.+ |+++|++++++|+++|++||||+++|.+++++++
T Consensus 2 ~~~I~vipGDGIGpEV~~~a~~vl~~~~~~~~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~L~Gavg~p~~~~~~~~ 81 (334)
T PRK08997 2 KQTITVIPGDGIGPSIIDATLKILDKLGCDFEYEFADAGLTALEKHGELLPQRTLDLIEKNKIALKGPLTTPVGEGFTSI 81 (334)
T ss_pred CcEEEEECCCcccHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHhhCCCCCHHHHHHHHHCCEEEECcccCCCCcCccch
Confidence 47899999999999999999999999999999999999976 9999999999999999999999999976667889
Q ss_pred hHHHHhhcCcEEEEEEeecCCCCCCCcccccEEEEecCCceeeecccceeeC--CEEEEEEEeeHHHHHHHHHHHHHHHH
Q 019198 104 NVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIRENTEGEYSGLEHEVVP--GVVESLKVITKFCSERIAKYAFEYAY 181 (344)
Q Consensus 104 ~~~LR~~ldlyanvRP~~~~pg~~~~~~~vDivIvREnteG~Y~g~e~~~~~--~va~~~~~~Tr~~~eRiar~AFe~A~ 181 (344)
++.|||+||||+|+||||++||+++|++++|++||||||||+|+|.+++..+ .+++++++|||+++|||+|+||++|+
T Consensus 82 ~~~LR~~ldlyanvRP~k~~~g~~~~~~~iD~vivREnteG~Y~g~~~~~~~~~~~a~~~~~~Tr~~~eRi~r~Af~~A~ 161 (334)
T PRK08997 82 NVTLRKKFDLYANVRPVLSFPGTKARYDNIDIITVRENTEGMYSGEGQTVSEDGETAEATSIITRKGAERIVRFAYELAR 161 (334)
T ss_pred HHHHHHHcCCeEEEeecccCCCCCCccCCcCEEEEEeccCceecCccceecCCCceEEEEEEeeHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999875433 38999999999999999999999999
Q ss_pred hcCCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeeeHhHHHHHHHhCCCCccEEecCCcchhhhhhhhhhhcC
Q 019198 182 LNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAG 261 (344)
Q Consensus 182 ~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~vD~~~~~Lv~~P~~fdVIvt~NlfGDIlSDlaa~l~G 261 (344)
+|++++||++||+||||.|||||+++|+|++++||+|+++|+|||++|||||++|++||||||+|||||||||++|+++|
T Consensus 162 ~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~yP~V~~~~~~vDa~~~~lv~~P~~fdVivt~NlfGDILSDlaa~l~G 241 (334)
T PRK08997 162 KEGRKKVTAVHKANIMKSTSGLFLKVAREVALRYPDIEFEEMIVDATCMQLVMNPEQFDVIVTTNLFGDILSDLCAGLVG 241 (334)
T ss_pred hcCCCeEEEEeCCCcchhhhHHHHHHHHHHHhhCCCeEEEeeeHHHHHHHHhhCcccCcEEEEcCcccchhhHHHHHhcC
Confidence 99888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCcccCC------------CcCccCcCCCChhHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHcCcccCCCCCCC
Q 019198 262 GTGVMPGAGNVG------------NEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEEKYRTKDLGGG 329 (344)
Q Consensus 262 glGl~pSa~nig------------APdiaGk~iANP~a~Ils~ammL~~lg~~~~a~~i~~Av~~~l~~g~~~T~DlgG~ 329 (344)
|+||+||+ |+| ||||||||+|||+|+|||++|||+|||+.++|++|++||.+++++|+.+|+||||+
T Consensus 242 glGl~psa-nig~~~a~FEp~HGSAPdIAGk~iANP~a~IlS~amML~~lG~~~~A~~i~~AV~~vl~~G~~~T~DlGG~ 320 (334)
T PRK08997 242 GLGMAPGA-NIGRDAAIFEAVHGSAPDIAGKNLANPTSVILAAIQMLEYLGMPDKAERIRKAIVAVIEAGDRTTRDLGGT 320 (334)
T ss_pred CCCcCcce-eECCCceEEECCCCchhhhCCCCccCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHcCCccCcccCCC
Confidence 99999999 998 99999999999999999999999999999999999999999999996679999999
Q ss_pred CcHHHHHHHHHHhc
Q 019198 330 CTTQQIVDAVIANL 343 (344)
Q Consensus 330 ~sT~e~~~aV~~~l 343 (344)
+||+||+|+|+++|
T Consensus 321 a~T~e~~~av~~~l 334 (334)
T PRK08997 321 HGTTDFTQAVIDRL 334 (334)
T ss_pred cCHHHHHHHHHhhC
Confidence 99999999999875
No 4
>PLN00118 isocitrate dehydrogenase (NAD+)
Probab=100.00 E-value=1.1e-110 Score=822.45 Aligned_cols=315 Identities=53% Similarity=0.882 Sum_probs=306.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEeeCC-----CCCCcHHHHHHHHhcCeEEEccccCCCCCCCCc
Q 019198 28 SPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD-----MKRVPQQVLDSIRKNKVCLKGGLKTPVGGGVSS 102 (344)
Q Consensus 28 ~~~~I~vi~GDGIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~-----g~~lp~~~~~~~~~~da~l~G~~~~p~~~~~~s 102 (344)
+.++|+||||||||||||+++++||++++++++|+++++|.+ |+++|++++++|+++|++||||+++|...++++
T Consensus 40 ~~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~ie~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~L~G~i~~p~~~~~~s 119 (372)
T PLN00118 40 TPITATLFPGDGIGPEIAESVKQVFTAAGVPIEWEEHYVGTTVDPRTGSFLTWESLESVRRNKVGLKGPMATPIGKGHRS 119 (372)
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHHhcCCCeEEEEEeCcHHHHHhcCCcCCHHHHHHHHHCCEEEECCccCCccccccC
Confidence 569999999999999999999999999999999999999986 899999999999999999999999997667788
Q ss_pred hhHHHHhhcCcEEEEEEeecCCCCCCCcccccEEEEecCCceeeecccceeeCCEEEEEEEeeHHHHHHHHHHHHHHHHh
Q 019198 103 LNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYL 182 (344)
Q Consensus 103 ~~~~LR~~ldlyanvRP~~~~pg~~~~~~~vDivIvREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~~ 182 (344)
+++.|||+||||+||||||++||++++++++|+|||||||||+|+|.|++..+++++++++|||+++|||+|+||+||++
T Consensus 120 ~~~~LRk~ldLyaNvRPvr~~pg~~~~~~~iD~vIVREnteG~Y~g~~~~~~~gv~~~~~v~Tr~~~eRIar~AF~~A~~ 199 (372)
T PLN00118 120 LNLTLRKELGLYANVRPCYSLPGYKTRYDDVDLVTIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKT 199 (372)
T ss_pred chHHHHHHcCCeeeecccccCCCccCcccCceEEEEEecCCCcccceeeeccCCeEEEEEecCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988778899999999999999999999999999
Q ss_pred cCCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeeeHhHHHHHHHhCCCCccEEecCCcchhhhhhhhhhhcCC
Q 019198 183 NYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGG 262 (344)
Q Consensus 183 r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~vD~~~~~Lv~~P~~fdVIvt~NlfGDIlSDlaa~l~Gg 262 (344)
|++||||++||+||||.|||||+++|+|++++||+|+++|++||++|||||++|++||||||+|||||||||++++++||
T Consensus 200 r~~k~Vt~v~KaNvlk~tdglf~e~~~eva~eyPdI~~~~~~VDa~a~~Lv~~P~~fDViVt~NLfGDILSDlaa~l~Gg 279 (372)
T PLN00118 200 HGRKRVSAIHKANIMKKTDGLFLKCCREVAEKYPEIVYEEVIIDNCCMMLVKNPALFDVLVMPNLYGDIISDLCAGLIGG 279 (372)
T ss_pred cCCCeEEEEECCccchhhhHHHHHHHHHHHhhCCCceEEeeeHHHHHHHhccCcccCcEEEEcCcccchhhHHHHHhcCC
Confidence 98889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCcccCC-------------CcCccCcCCCChhHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHcCcccCCCCCCC
Q 019198 263 TGVMPGAGNVG-------------NEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEEKYRTKDLGGG 329 (344)
Q Consensus 263 lGl~pSa~nig-------------APdiaGk~iANP~a~Ils~ammL~~lg~~~~a~~i~~Av~~~l~~g~~~T~DlgG~ 329 (344)
+||+||+ |+| ||||||||+|||+|||||++|||+|||++++|++|++||.+++++|+++|+||||+
T Consensus 280 lGlapSa-nig~~~~a~FEpvHGSAPdIAGk~iANP~A~IlS~amML~~lG~~~~A~~I~~Av~~~l~~G~~~T~DlGG~ 358 (372)
T PLN00118 280 LGLTPSC-NIGENGLALAEAVHGSAPDIAGKNLANPTALLLSAVMMLRHLKLNEQAEQIHNAILNTIAEGKYRTADLGGS 358 (372)
T ss_pred cccCcce-eecCCCCeEEECCCCChhhhCCCCCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHcCCccCcccCCC
Confidence 9999999 998 99999999999999999999999999999999999999999999996689999999
Q ss_pred CcHHHHHHHHHHhc
Q 019198 330 CTTQQIVDAVIANL 343 (344)
Q Consensus 330 ~sT~e~~~aV~~~l 343 (344)
+||+||+|+|+++|
T Consensus 359 ~sT~e~~dav~~~l 372 (372)
T PLN00118 359 STTTDFTKAICDHL 372 (372)
T ss_pred cCHHHHHHHHHhhC
Confidence 99999999999876
No 5
>KOG0785 consensus Isocitrate dehydrogenase, alpha subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-111 Score=795.12 Aligned_cols=342 Identities=50% Similarity=0.806 Sum_probs=323.4
Q ss_pred CCcCchhhhHhhhhh-cccccCCCCCCC-CceEEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEeeCC-----CCCC
Q 019198 1 MSRRSLPFLKSLIQT-RSVTYMPRPGDG-SPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD-----MKRV 73 (344)
Q Consensus 1 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~I~vi~GDGIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~-----g~~l 73 (344)
|||++..+|+.+... +.|.+....... ++++|++||||||||||++++++|++++.++|+|+.+|++.. +..+
T Consensus 5 ~~r~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~vtLIpGDGIGpEi~~av~kvf~aak~pIewd~~dv~~~~~~~~~~~i 84 (365)
T KOG0785|consen 5 FFRSVSRRLGAFRGKDQPPQSARAFNSATKTITVTLIPGDGIGPEISPAVKKVFEAAKVPIEWDFIDVTPIKGPFGGKAI 84 (365)
T ss_pred HHHHHHHHHHhhhcCCCCccccccccCCCCceEEEEecCCCCCHHHHHHHHHHHHhcCCCcceeeeeccccccCCCCccC
Confidence 467777777777654 333333322222 458999999999999999999999999999999999998765 4689
Q ss_pred cHHHHHHHHhcCeEEEccccCCCCCCCCchhHHHHhhcCcEEEEEEeecCCCCCCCcccccEEEEecCCceeeeccccee
Q 019198 74 PQQVLDSIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIRENTEGEYSGLEHEV 153 (344)
Q Consensus 74 p~~~~~~~~~~da~l~G~~~~p~~~~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~~~vDivIvREnteG~Y~g~e~~~ 153 (344)
|++++++++++.+.||||+.||.+++++|+|++|||+|+||||||||++++|..+|++++|+|+|||||||+|+|+||++
T Consensus 85 p~~~~esl~~nkvgLkGp~~tPi~kgh~S~nl~LRK~f~LyANVRPc~SieG~Kt~Y~~vD~V~IRENTEgeYsgiEh~v 164 (365)
T KOG0785|consen 85 PDEAVESLRKNKVGLKGPVATPIGKGHRSLNLALRKEFGLYANVRPCKSIEGYKTPYDDVDLVIIRENTEGEYSGIEHQV 164 (365)
T ss_pred CHHHHHHHHhhcccccCcccCccccccccHHHHHHHHhchhccceecccccCCcCCCCCceEEEEecCCccccccceeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCEEEEEEEeeHHHHHHHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeeeHhHHHHHHH
Q 019198 154 VPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLV 233 (344)
Q Consensus 154 ~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~vD~~~~~Lv 233 (344)
.+||++++++||+.+++||++|||+||++++|++||++||+|||+.|||||+++|+|++++||||++|++|+|++|++|+
T Consensus 165 vpGVvqsiK~IT~~AS~Ria~~AF~yAr~~~R~~vtvvHKaNImr~tDGLFle~cre~a~~y~dI~~eE~~lDt~~l~lv 244 (365)
T KOG0785|consen 165 VPGVVQSIKLITEAASRRIAEYAFEYARQNGRKRVTVVHKANIMRMTDGLFLECCREVAKKYPDIKFEEQYLDTCCLKLV 244 (365)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEEehhhhhhhcchHHHHHHHHHhhhCCccchhHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCccEEecCCcchhhhhhhhhhhcCCCccccCcccCC------------CcCccCcCCCChhHHHHHHHHHhhhcCc
Q 019198 234 SKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGNVG------------NEKVVEQKKANPVALLLSSAMMLRHLQF 301 (344)
Q Consensus 234 ~~P~~fdVIvt~NlfGDIlSDlaa~l~GglGl~pSa~nig------------APdiaGk~iANP~a~Ils~ammL~~lg~ 301 (344)
++|..|||+|+||||||||||+||+|+||||+.||+ ||| ||||||||+|||+|.+||++|||||+|+
T Consensus 245 ~~P~~~DVlV~PNLYGDIlSD~~agLvGgLGltPS~-NiG~g~~~~e~vHGsAPDIAGkdlANPtAlllS~vmMLrhm~l 323 (365)
T KOG0785|consen 245 RNPSCFDVLVMPNLYGDILSDLCAGLVGGLGLTPSA-NIGDGIVIFEAVHGSAPDIAGKDLANPTALLLSAVMMLRHMGL 323 (365)
T ss_pred cCchhceEEeccchhHHHHHHHHHHhccCcccCCCc-ccCCCeeeeecccCCCcccccCCcCCcHHHHHHHHHHHHHcCc
Confidence 999999999999999999999999999999999999 999 9999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHcCcccCCCCCCCCcHHHHHHHHHHhc
Q 019198 302 PSFADRLETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANL 343 (344)
Q Consensus 302 ~~~a~~i~~Av~~~l~~g~~~T~DlgG~~sT~e~~~aV~~~l 343 (344)
+++|++|+.||.++|++|+++|+||||+++|+||+++|+++|
T Consensus 324 ~~~A~~I~~Av~~ti~eg~~rT~DLGGka~~seft~aVc~~l 365 (365)
T KOG0785|consen 324 NDQADQIESAVFKTIAEGKIRTPDLGGKATTSEFTDAVCDRL 365 (365)
T ss_pred hhHHHHHHHHHHHHHhccCccCcccCCCccchHHHHHHHhcC
Confidence 999999999999999999999999999999999999999986
No 6
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional
Probab=100.00 E-value=4.5e-109 Score=802.06 Aligned_cols=308 Identities=37% Similarity=0.604 Sum_probs=299.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEeeCC-----CCCCcHHHHHHHHhcCeEEEccccCCCCCCCCchh
Q 019198 30 RAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD-----MKRVPQQVLDSIRKNKVCLKGGLKTPVGGGVSSLN 104 (344)
Q Consensus 30 ~~I~vi~GDGIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~-----g~~lp~~~~~~~~~~da~l~G~~~~p~~~~~~s~~ 104 (344)
++|+|||||||||||++++++||++++++++|+++++|.+ |+++|++++++||++|++||||+++|. .+.+
T Consensus 2 ~~I~vipGDGIGpEv~~~~~~vl~~~~~~~~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~l~G~vg~p~----~~~~ 77 (330)
T PRK14025 2 HKICVIEGDGIGKEVVPAALHVLEATGLPFEFVYAEAGDEVFEKTGKALPEETIEAAKEADAVLFGAAGETA----ADVI 77 (330)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHhcCCcEEEEEEcCCHHHHHHhCCCCCHHHHHHHHHCCEEEEccCCCCc----cchH
Confidence 6899999999999999999999999999999999999987 999999999999999999999999983 4679
Q ss_pred HHHHhhcCcEEEEEEeecCCCCCCCcccccEEEEecCCceeeecccceeeCCEEEEEEEeeHHHHHHHHHHHHHHHHhc-
Q 019198 105 VQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLN- 183 (344)
Q Consensus 105 ~~LR~~ldlyanvRP~~~~pg~~~~~~~vDivIvREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~~r- 183 (344)
+.|||+||||+|+||||++||++++++++|++||||||||+|+|.|++..+++++++++|||+++|||+|+||+||++|
T Consensus 78 ~~LR~~ldlyanvRP~r~~pg~~~~~~~iD~vivREnteG~Y~g~~~~~~~~~~~~~~~~Tr~~~~Ri~r~Af~~A~~r~ 157 (330)
T PRK14025 78 VKLRRILDTYANVRPVKSYKGVKCLYPDIDYVIVRENTEGLYKGIEAEIADGVTVATRVITRKASERIFRFAFEMAKRRK 157 (330)
T ss_pred HHHHHHcCCeEEEEEeecCCCCCCccCCcCEEEEEECCCceecCcccccCCCceEEeEeccHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999887778999999999999999999999999999
Q ss_pred ---CCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeeeHhHHHHHHHhCCCCccEEecCCcchhhhhhhhhhhc
Q 019198 184 ---YRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIA 260 (344)
Q Consensus 184 ---~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~vD~~~~~Lv~~P~~fdVIvt~NlfGDIlSDlaa~l~ 260 (344)
++|+||++||+||||.|||||+++|+||+++||+|++++++||++|||||++|++||||||+|||||||||++|+++
T Consensus 158 ~~~~~k~Vt~v~KaNvl~~t~glf~e~~~eva~~yp~i~~~~~~vDa~~~~lv~~P~~fDVivt~NlfGDILSDlaa~l~ 237 (330)
T PRK14025 158 KMGKEGKVTCAHKANVLKKTDGLFKKTFYEVAKEYPDIKAEDYYVDAMNMYIITRPQTFDVVVTSNLFGDILSDGAAGLV 237 (330)
T ss_pred ccCCCCeEEEEECCCchhhhhHHHHHHHHHHHhhCCCeEEEeeeHHHHHHHHhcCcccCcEEEEcCcccchhhHHHHHhc
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCcccCC------------CcCccCcCCCChhHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHcCcccCCCCCC
Q 019198 261 GGTGVMPGAGNVG------------NEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEEKYRTKDLGG 328 (344)
Q Consensus 261 GglGl~pSa~nig------------APdiaGk~iANP~a~Ils~ammL~~lg~~~~a~~i~~Av~~~l~~g~~~T~DlgG 328 (344)
||+||+||+ |+| ||||||||+|||+|+|||++|||+|||++++|++|++||++++++| .+|+||||
T Consensus 238 GglGl~psa-nig~~~a~FEp~HGSAPdiAGk~iANP~a~IlS~ammL~~lG~~~~A~~I~~Av~~vl~~g-~~T~DlGG 315 (330)
T PRK14025 238 GGLGLAPSA-NIGDKYGLFEPVHGSAPDIAGKGIANPTATILTAVLMLRHLGENEEADKVEKALEEVLALG-LTTPDLGG 315 (330)
T ss_pred CCCCcccce-eeCCCcceeEcCCCCchhhCCCCCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcC-CCCcccCC
Confidence 999999999 998 9999999999999999999999999999999999999999999999 48999999
Q ss_pred CCcHHHHHHHHHHhc
Q 019198 329 GCTTQQIVDAVIANL 343 (344)
Q Consensus 329 ~~sT~e~~~aV~~~l 343 (344)
++||+||+|+|+++|
T Consensus 316 ~~~T~e~~~av~~~~ 330 (330)
T PRK14025 316 NLSTMEMAEEVAKRV 330 (330)
T ss_pred CcCHHHHHHHHHHhC
Confidence 999999999999875
No 7
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type. The NADP-dependent IDH of Thermus aquaticus thermophilus strain HB8 resembles these NAD-dependent IDH, except for the residues involved in cofactor specificity, much more closely than it resembles other prokaryotic NADP-dependent IDH, including that of Thermus aquaticus strain YT1.
Probab=100.00 E-value=6.3e-109 Score=803.90 Aligned_cols=316 Identities=62% Similarity=0.982 Sum_probs=305.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEeeCC---CCCCcHHHHHHHHhcCeEEEccccCCCCCC-CCc
Q 019198 27 GSPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD---MKRVPQQVLDSIRKNKVCLKGGLKTPVGGG-VSS 102 (344)
Q Consensus 27 ~~~~~I~vi~GDGIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~---g~~lp~~~~~~~~~~da~l~G~~~~p~~~~-~~s 102 (344)
|++++|+||||||||||||+++++||++++++++|+++++|++ |+++|++++++|+++|++||||+++|...+ ++|
T Consensus 1 ~g~~~i~vlpGDGIGpEv~~~a~~vl~~~~~~i~~~~~~~G~~~~~g~~lp~~~l~~~~~~da~l~Gav~~p~~~~~~~s 80 (333)
T TIGR00175 1 GGKYTVTLIPGDGIGPEISGSVKKIFRAANVPIEFEEIDVSPQTDGKTEIPDEAVESIKRNKVALKGPLETPIGKGGHRS 80 (333)
T ss_pred CCcEEEEEECCCcccHHHHHHHHHHHHhCCCceEEEEEecChhhccCCcCCHHHHHHHHHCCEEEEcccCCccccccccc
Confidence 4679999999999999999999999999999999999999976 889999999999999999999999996443 788
Q ss_pred hhHHHHhhcCcEEEEEEeecCCCCCCCcccccEEEEecCCceeeecccceeeCCEEEEEEEeeHHHHHHHHHHHHHHHHh
Q 019198 103 LNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYL 182 (344)
Q Consensus 103 ~~~~LR~~ldlyanvRP~~~~pg~~~~~~~vDivIvREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~~ 182 (344)
+++.||++||||+|+||||++||++++++++|++||||||||+|+|.|++..+++++++++|||+++|||+|+||+||++
T Consensus 81 ~~~~lR~~ldlyanvRP~k~~pg~~~~~~~iD~vivREnteG~Y~g~~~~~~~~~~~~~~~~Tr~~~eRi~r~Af~~A~~ 160 (333)
T TIGR00175 81 LNVALRKELDLYANVVHCKSLPGFKTRHEDVDIVIIRENTEGEYSGLEHESVPGVVESLKVITRDKSERIARYAFEYARK 160 (333)
T ss_pred hhHHHHHHcCCEEEeEEecCCCCCCCCCCCcCEEEEEEeCCCcccceeEeccCCeEEEEEecCHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999987778899999999999999999999999999
Q ss_pred cCCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeeeHhHHHHHHHhCCCCccEEecCCcchhhhhhhhhhhcCC
Q 019198 183 NYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGG 262 (344)
Q Consensus 183 r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~vD~~~~~Lv~~P~~fdVIvt~NlfGDIlSDlaa~l~Gg 262 (344)
|++||||++||+||||.|||+|+++|+|++++||+|+++|+|||+++||||++|++||||||+|||||||||++|+++||
T Consensus 161 r~~k~Vt~v~KaNvl~~t~glf~~~~~eva~~yp~v~~~~~~vDa~~~~lv~~P~~fdViVt~NlfGDILSDlaa~l~Gs 240 (333)
T TIGR00175 161 NGRKKVTAVHKANIMKLADGLFLNVCREVAKEYPDITFESMIVDNTCMQLVSRPSQFDVMVMPNLYGNILSNLGAGLVGG 240 (333)
T ss_pred cCCCeEEEEECCccchhhHHHHHHHHHHHHHHCCCCeeeeeeHHHHHHHHhcCcccccEEEEccccchhhhHHHHHhcCC
Confidence 97788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCcccCC-------------CcCccCcCCCChhHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHcCcccCCCCCCC
Q 019198 263 TGVMPGAGNVG-------------NEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEEKYRTKDLGGG 329 (344)
Q Consensus 263 lGl~pSa~nig-------------APdiaGk~iANP~a~Ils~ammL~~lg~~~~a~~i~~Av~~~l~~g~~~T~DlgG~ 329 (344)
+||+||+ |+| ||||||||+|||+|+|||++|||+|||++++|++|++||.+++++|+.+|+||||+
T Consensus 241 lGl~pSa-nig~~~a~fEp~~hGSApdiaGk~iaNP~a~Ils~ammL~~lG~~~~a~~i~~Av~~~l~~G~~~T~DlGG~ 319 (333)
T TIGR00175 241 PGLVPGA-NIGRDYAVFEPGVRHTGPDIAGQNIANPTALILSSVMMLNHLGLKEHADRIQKAVLSTIAEGKNRTKDLGGT 319 (333)
T ss_pred cccCcee-EEcCCCceEeccCCCCchhhCCCCccChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCCccChhcCCC
Confidence 9999999 998 99999999999999999999999999999999999999999999996689999999
Q ss_pred CcHHHHHHHHHHhc
Q 019198 330 CTTQQIVDAVIANL 343 (344)
Q Consensus 330 ~sT~e~~~aV~~~l 343 (344)
+||+||+|+|+++|
T Consensus 320 ~~T~e~~~ai~~~l 333 (333)
T TIGR00175 320 ATTSDFTEAVIKRL 333 (333)
T ss_pred cCHHHHHHHHHhhC
Confidence 99999999999876
No 8
>PRK08194 tartrate dehydrogenase; Provisional
Probab=100.00 E-value=8.3e-108 Score=799.68 Aligned_cols=312 Identities=28% Similarity=0.492 Sum_probs=295.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHc-----CCCeeEEEEEeeCC-----CCCCcHHHHHHHHhcCeEEEccccCCC-C
Q 019198 29 PRAVTLIPGDGIGPLVTNAVEQVMEAM-----HAPIYFEKYEVHGD-----MKRVPQQVLDSIRKNKVCLKGGLKTPV-G 97 (344)
Q Consensus 29 ~~~I~vi~GDGIGpEV~~~~~~vl~~~-----~~~i~~~~~~~g~~-----g~~lp~~~~~~~~~~da~l~G~~~~p~-~ 97 (344)
+|+|+||||||||||||+++++||+++ +++++|+++++|.+ |+++|++++++||++|++||||+++|. .
T Consensus 3 ~~~I~vipGDGIGpEV~~~a~~vl~a~~~~~~~~~~e~~~~~~G~~~~~~~G~~lp~~tl~~~k~~dail~G~vg~p~~~ 82 (352)
T PRK08194 3 QFKIAVIPGDGVGKEVVPAAVRVLKAVAEVHGGLKFEFTEFPWSCEYYLEHGEMMPEDGLEQLKQFDAIFLGAVGNPKLV 82 (352)
T ss_pred ceEEEEECCCCchHHHHHHHHHHHHHHHhhccCCceEEEEEcCcHHHHHHhCCCCCHHHHHHHHhCCEEEEcccCCCCcC
Confidence 589999999999999999999999976 58999999999886 999999999999999999999999995 3
Q ss_pred CCCCc---hhHHHHhhcCcEEEEEEeecCCCCCCCc---ccccEEEEecCCceeeecccceee---CCEEEEEEEeeHHH
Q 019198 98 GGVSS---LNVQLRKELDLYAALVNCFNLPGLPTRH---QNVDIVVIRENTEGEYSGLEHEVV---PGVVESLKVITKFC 168 (344)
Q Consensus 98 ~~~~s---~~~~LR~~ldlyanvRP~~~~pg~~~~~---~~vDivIvREnteG~Y~g~e~~~~---~~va~~~~~~Tr~~ 168 (344)
+++++ +++.|||+||||+|+||||++||+++|+ +++|+|||||||||+|+|.++... .++|+++++|||++
T Consensus 83 ~~~~~~~~~~l~LR~~ldLyaNvRP~k~~pg~~splk~~~~iD~vivREnteG~Y~g~~~~~~~g~~~~a~~~~~~Tr~~ 162 (352)
T PRK08194 83 PDHISLWGLLIKIRREFEQVINIRPAKQLRGIKSPLANPKDFDLLVVRENSEGEYSEVGGRIHRGEDEIAIQNAVFTRKG 162 (352)
T ss_pred CCCCCchhhHHHHHHHcCCEEEEEeeecCCCCCCCCCCCCCCCEEEEEeCCCccccCCCccccCCccceEEEEEEeeHHH
Confidence 33333 4999999999999999999999999987 689999999999999999875532 35789999999999
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeeeHhHHHHHHHhCCCCccEEecCCcc
Q 019198 169 SERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLY 248 (344)
Q Consensus 169 ~eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~vD~~~~~Lv~~P~~fdVIvt~Nlf 248 (344)
+|||+|+||++|++| ++|||+|||+|||+.|++||+++|+||+++||+|+++|+|||++|||||++|++||||||+|||
T Consensus 163 ~eRI~r~Af~~A~~r-~~~Vt~v~KaNvl~~t~~lf~~~~~eva~~yp~V~~~~~~vDa~~~~Lv~~P~~fDVIVt~Nlf 241 (352)
T PRK08194 163 TERAMRYAFELAAKR-RKHVTSATKSNGIVHSMPFWDEVFQEVGKDYPEIETDSQHIDALAAFFVTRPEEFDVIVASNLF 241 (352)
T ss_pred HHHHHHHHHHHHHHc-CCcEEEEeCcchhhhhHHHHHHHHHHHHhhCCCceeeehhHHHHHHHHhhChhhCcEEEEccch
Confidence 999999999999998 7899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhcCCCccccCcccCC---------------CcCccCcCCCChhHHHHHHHHHhhhcCchHHHHHHHHHHH
Q 019198 249 GNLVSNTAAGIAGGTGVMPGAGNVG---------------NEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVK 313 (344)
Q Consensus 249 GDIlSDlaa~l~GglGl~pSa~nig---------------APdiaGk~iANP~a~Ils~ammL~~lg~~~~a~~i~~Av~ 313 (344)
||||||++++++||+||+||+ |+| ||||||||+|||+|+|||++|||+|||++++|++|++||+
T Consensus 242 GDILSDlaa~l~GslGl~pSa-nig~~~~~~alFEp~HGSAPdiAGk~iANP~a~IlS~amML~~lg~~~~A~~i~~Av~ 320 (352)
T PRK08194 242 GDILTDIGAAIMGSIGIAPAA-NINVNGKYPSMFEPVHGSAPDIAGKGIANPIGQIWTAKLMLDHFGEEELGSHLLDVIE 320 (352)
T ss_pred HHHHhHHHHHhcCCcccccee-eecCCCCcceEEECCCCCchhhCCCCcCCcHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 999999999999999999999 995 9999999999999999999999999999999999999999
Q ss_pred HHHHcCcccCCCCCCCCcHHHHHHHHHHhc
Q 019198 314 RVISEEKYRTKDLGGGCTTQQIVDAVIANL 343 (344)
Q Consensus 314 ~~l~~g~~~T~DlgG~~sT~e~~~aV~~~l 343 (344)
+++++| .+|+||||++||+||+++|+++|
T Consensus 321 ~~l~~g-~~T~DlGG~~~T~e~~~ai~~~l 349 (352)
T PRK08194 321 DVTEDG-IKTPDIGGRATTDEVTDEIISRL 349 (352)
T ss_pred HHHHcC-CCcCcCCCCcCHHHHHHHHHHHH
Confidence 999999 59999999999999999999987
No 9
>TIGR02089 TTC tartrate dehydrogenase. Tartrate dehydrogenase catalyzes the oxidation of both meso- and (+)-tartrate as well as a D-malate. These enzymes are closely related to the 3-isopropylmalate and isohomocitrate dehydrogenases found in TIGR00169 and TIGR02088, respectively.
Probab=100.00 E-value=2e-107 Score=797.58 Aligned_cols=312 Identities=33% Similarity=0.527 Sum_probs=295.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHc-----CCCeeEEEEEeeCC-----CCCCcHHHHHHHHhcCeEEEccccCCCC-
Q 019198 29 PRAVTLIPGDGIGPLVTNAVEQVMEAM-----HAPIYFEKYEVHGD-----MKRVPQQVLDSIRKNKVCLKGGLKTPVG- 97 (344)
Q Consensus 29 ~~~I~vi~GDGIGpEV~~~~~~vl~~~-----~~~i~~~~~~~g~~-----g~~lp~~~~~~~~~~da~l~G~~~~p~~- 97 (344)
+|+|++||||||||||++++++||+++ +++++|+++++|++ |+++|++++++||++|++||||+++|..
T Consensus 3 ~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~k~~da~L~G~vg~p~~~ 82 (352)
T TIGR02089 3 QYRIAAIPGDGIGKEVVAAALQVLEAAAKRHGGFSLHFTEFPWSCDYYKEHGKMMPEDGLEKLKKFDAIFLGAVGWPALV 82 (352)
T ss_pred ceEEEEECCCcccHHHHHHHHHHHHHHHhhcCCcceEEEEECCcHHHHHHhCCCCCHHHHHHHHhCCEEEEecccCCCCC
Confidence 589999999999999999999999976 58999999999886 9999999999999999999999999952
Q ss_pred C---CCCchhHHHHhhcCcEEEEEEeecCCCCCCCc-----ccccEEEEecCCceeeecccceee----CCEEEEEEEee
Q 019198 98 G---GVSSLNVQLRKELDLYAALVNCFNLPGLPTRH-----QNVDIVVIRENTEGEYSGLEHEVV----PGVVESLKVIT 165 (344)
Q Consensus 98 ~---~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~-----~~vDivIvREnteG~Y~g~e~~~~----~~va~~~~~~T 165 (344)
+ +.+++++.|||+||||+|+||||++||+++|+ +++|++||||||||+|+|.+++.. +++|+++++||
T Consensus 83 ~~~~~~~~~~l~LRk~ldLyaNvRP~~~~~g~~sp~k~~~~~~iD~vivREnteG~Y~G~~~~~~~~~~~~~a~~~~~~t 162 (352)
T TIGR02089 83 PDHISLWGLLLKIRREFDQYANVRPAKLLPGVTSPLRNCGPGDFDFVVVRENSEGEYSGVGGRIHRGTDEEVATQNAIFT 162 (352)
T ss_pred CCccCchhhHHHHHHHcCCeEEEEEeecCCCCCCccccccCCCCCEEEEEecCCcccccccccccCCccceeEEEeEEec
Confidence 2 23346999999999999999999999999987 589999999999999999875532 25789999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeeeHhHHHHHHHhCCCCccEEecC
Q 019198 166 KFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTP 245 (344)
Q Consensus 166 r~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~vD~~~~~Lv~~P~~fdVIvt~ 245 (344)
|+++|||+|+||++|++| ++|||++||+|||+.|++||+++|+|++++||+|+++|+|||++|||||++|++||||||+
T Consensus 163 r~~~eRi~r~Af~~A~~r-r~kVt~v~KaNvl~~t~~lf~~~~~eva~~yp~v~~~~~~vD~~~~~lv~~P~~fDVivt~ 241 (352)
T TIGR02089 163 RKGVERIMRFAFELAQKR-RKHLTSATKSNGIRHSMPFWDEVFAEVAAEYPDVEWDSYHIDALAARFVLKPETFDVIVAS 241 (352)
T ss_pred HHHHHHHHHHHHHHHHHc-CCCEEEEeCCcchhhhhHHHHHHHHHHHhhCCCceEeeehHHHHHHHHhcChhhCcEEEec
Confidence 999999999999999999 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhhhhhhhhhcCCCccccCcccCC---------------CcCccCcCCCChhHHHHHHHHHhhhcCchHHHHHHHH
Q 019198 246 NLYGNLVSNTAAGIAGGTGVMPGAGNVG---------------NEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLET 310 (344)
Q Consensus 246 NlfGDIlSDlaa~l~GglGl~pSa~nig---------------APdiaGk~iANP~a~Ils~ammL~~lg~~~~a~~i~~ 310 (344)
|||||||||++|+++||+||+||+ |+| ||||||||+|||+|||||++|||+|||++++|++|++
T Consensus 242 NlfGDILSD~aa~l~GglGl~psa-nig~~~~~~a~fEp~HGSAPdiAGk~iANP~a~Ils~amML~~lg~~~~A~~I~~ 320 (352)
T TIGR02089 242 NLFGDILSDLGAALMGSLGVAPSA-NINPEGKFPSMFEPVHGSAPDIAGKGIANPIGAIWTAAMMLEHLGEKEAGAKIMD 320 (352)
T ss_pred ccchhhhhHHHHHhcCCccccceE-EecCCCCcceeeecCCCCchhhcCCCccCcHHHHHHHHHHHHHcCChhHHHHHHH
Confidence 999999999999999999999999 995 9999999999999999999999999999999999999
Q ss_pred HHHHHHHcCcccCCCCCCCCcHHHHHHHHHHhc
Q 019198 311 AVKRVISEEKYRTKDLGGGCTTQQIVDAVIANL 343 (344)
Q Consensus 311 Av~~~l~~g~~~T~DlgG~~sT~e~~~aV~~~l 343 (344)
||++++++| .+|+||||++||+||+|+|+++|
T Consensus 321 Av~~~l~~g-~~T~DlGG~~sT~e~~~ai~~~l 352 (352)
T TIGR02089 321 AIERVTAAG-ILTPDVGGKATTSEVTEAVCNAL 352 (352)
T ss_pred HHHHHHHcC-CccCCCCCCcCHHHHHHHHHhhC
Confidence 999999999 59999999999999999999875
No 10
>PRK09222 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=1.1e-106 Score=813.59 Aligned_cols=314 Identities=43% Similarity=0.673 Sum_probs=303.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEeeCC-----C-CCCcHHHHHHHHhcCeEEEccccCCCCCCCC
Q 019198 28 SPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD-----M-KRVPQQVLDSIRKNKVCLKGGLKTPVGGGVS 101 (344)
Q Consensus 28 ~~~~I~vi~GDGIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~-----g-~~lp~~~~~~~~~~da~l~G~~~~p~~~~~~ 101 (344)
.+++|+||||||||||||+++++||++++++++|+++++|.+ | +++|++++++|+++|++||||+++|.+.+++
T Consensus 3 ~~~~I~vipGDGIGPEV~~a~~~VL~a~~~~i~~~~~~~G~~~~~~~g~~~lp~~~~~~i~~~da~LkG~i~tP~~~~~~ 82 (482)
T PRK09222 3 EKTPITVAYGDGIGPEIMEAVLKILEAAGAPLEIETIEIGEKVYKKGWTSGISPSAWESIRRTKVLLKAPITTPQGGGYK 82 (482)
T ss_pred CcceEEEECCCcccHHHHHHHHHHHHhcCCceEEEEEcCCHHHHHhcCCCCCCHHHHHHHHHCCEEEEccccCCCccCcc
Confidence 358999999999999999999999999999999999999986 4 6999999999999999999999999766788
Q ss_pred chhHHHHhhcCcEEEEEEeecC-CCCCCCcccccEEEEecCCceeeecccceeeCCEEEEEEEeeHHHHHHHHHHHHHHH
Q 019198 102 SLNVQLRKELDLYAALVNCFNL-PGLPTRHQNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYA 180 (344)
Q Consensus 102 s~~~~LR~~ldlyanvRP~~~~-pg~~~~~~~vDivIvREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A 180 (344)
|+++.|||+|||||||||||++ ||++++++++|+|||||||||+|+|+|++..+++++++++|||+++|||+||||+||
T Consensus 83 s~~~~LRk~ldLYaNvRP~r~~~pgv~~~~~~iD~vIVRENtEG~Y~G~e~~~~~~~~~~~k~iTr~~~eRI~r~AFe~A 162 (482)
T PRK09222 83 SLNVTLRKTLGLYANVRPCVSYHPFVETKHPNLDVVIIRENEEDLYAGIEHRQTPDVYQCLKLISRPGSEKIIRYAFEYA 162 (482)
T ss_pred chHHHHHHHcCCeEEeeeEEecCCCCCCCCCCcCEEEEEeccCCeeccceeecCCCeeeEeeccCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 999999999999999999999999999887788999999999999999999999999
Q ss_pred HhcCCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeeeHhHHHHHHHhCCCCccEEecCCcchhhhhhhhhhhc
Q 019198 181 YLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIA 260 (344)
Q Consensus 181 ~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~vD~~~~~Lv~~P~~fdVIvt~NlfGDIlSDlaa~l~ 260 (344)
++|+|||||++||+||||.|||||+++|+|++++||+|+++|++||++|||||++|++||||||+|||||||||++|+++
T Consensus 163 ~~r~rkkVt~v~KaNVmk~tdglf~~v~~eva~eyPdI~~~~~~VDa~a~~Lv~~P~~FDVIVt~NLfGDILSDlaa~l~ 242 (482)
T PRK09222 163 RANGRKKVTCLTKDNIMKLTDGLFHKVFDEIAKEYPDIEAEHYIVDIGAARLATNPENFDVIVTPNLYGDILSDIAAEIS 242 (482)
T ss_pred HhcCCCeEEEEECCCcccccchHHHHHHHHHHhhCCCceEeeeeHHHHHHHHhcCcccceEEEEcccccchhhHHHHHhc
Confidence 99988899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCcccCC------------CcCccCcCCCChhHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHcCcccCCCCCC
Q 019198 261 GGTGVMPGAGNVG------------NEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEEKYRTKDLGG 328 (344)
Q Consensus 261 GglGl~pSa~nig------------APdiaGk~iANP~a~Ils~ammL~~lg~~~~a~~i~~Av~~~l~~g~~~T~DlgG 328 (344)
||+||+||+ |+| ||||||||+|||+|+|||++|||+|||+.++|++|++||.+++++| ++|+||||
T Consensus 243 GslGlapSa-nig~~~amFEpvHGSAPdIAGk~iANP~a~IlSaamML~hlG~~~~A~~I~~Av~~tl~~G-~~T~Dl~g 320 (482)
T PRK09222 243 GSVGLAGSA-NIGEEYAMFEAVHGSAPDIAGKNIANPSGLLNAAVMMLVHIGQFDIAELIENAWLKTLEDG-IHTADIYN 320 (482)
T ss_pred CCcccccce-ecCCCceeeECCCCCchhhcCCCccCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHcC-CCCcccCC
Confidence 999999999 998 9999999999999999999999999999999999999999999999 59999955
Q ss_pred ------CCcHHHHHHHHHHhc
Q 019198 329 ------GCTTQQIVDAVIANL 343 (344)
Q Consensus 329 ------~~sT~e~~~aV~~~l 343 (344)
++||+||+|+|+++|
T Consensus 321 ~~~~~~~~~T~e~~~aVi~~l 341 (482)
T PRK09222 321 EGVSKKKVGTKEFAEAVIENL 341 (482)
T ss_pred CCCCCCCcCHHHHHHHHHHHH
Confidence 589999999999987
No 11
>PRK03437 3-isopropylmalate dehydrogenase; Provisional
Probab=100.00 E-value=4.2e-106 Score=785.58 Aligned_cols=309 Identities=33% Similarity=0.517 Sum_probs=293.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHc---CCCeeEEEEEeeCC-----CCCCcHHHHHHHHhcCeEEEccccCCCCC-
Q 019198 28 SPRAVTLIPGDGIGPLVTNAVEQVMEAM---HAPIYFEKYEVHGD-----MKRVPQQVLDSIRKNKVCLKGGLKTPVGG- 98 (344)
Q Consensus 28 ~~~~I~vi~GDGIGpEV~~~~~~vl~~~---~~~i~~~~~~~g~~-----g~~lp~~~~~~~~~~da~l~G~~~~p~~~- 98 (344)
++++|+||||||||||||+++++||+++ +++++|+++++|++ |+++|++++++||++|++||||+++|..+
T Consensus 3 k~~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~Gavg~p~~~~ 82 (344)
T PRK03437 3 KTMKLAVIPGDGIGPEVVAEALKVLDAVAAGGPGVETTEYDLGARRYLRTGETLPDSVLAELRQHDAILLGAIGDPSVPS 82 (344)
T ss_pred ceEEEEEECCCCccHHHHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHCCcCCHHHHHHHHHCCEEEEeecCCCCCCC
Confidence 4589999999999999999999999987 89999999999987 99999999999999999999999999522
Q ss_pred --CCCchhHHHHhhcCcEEEEEEeecCCCCCCCc---ccccEEEEecCCceeeeccccee----eCCEEEEEEEeeHHHH
Q 019198 99 --GVSSLNVQLRKELDLYAALVNCFNLPGLPTRH---QNVDIVVIRENTEGEYSGLEHEV----VPGVVESLKVITKFCS 169 (344)
Q Consensus 99 --~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~---~~vDivIvREnteG~Y~g~e~~~----~~~va~~~~~~Tr~~~ 169 (344)
..++.++.|||+||||+|+||||++||+++|+ +++|++||||||||+|+|.+++. .+++|+++++|||+++
T Consensus 83 ~~~~~~~~~~LRk~ldLyaNvRP~r~~pg~~sp~k~~~~iD~vivREnteG~Y~g~~~~~~~~~~~~~a~~~~~~Tr~~~ 162 (344)
T PRK03437 83 GVLERGLLLKLRFALDHYVNLRPSKLYPGVTSPLAGPGDIDFVVVREGTEGPYTGNGGALRVGTPHEVATEVSVNTAFGV 162 (344)
T ss_pred CCcccchHHHHHHHcCCeEEEEEeecCCCCCCcCCCCCCCCEEEEEECCCccccCCcccccCCCcceeEEEEEEecHHHH
Confidence 24677999999999999999999999999987 68999999999999999987543 2357889999999999
Q ss_pred HHHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeeeHhHHHHHHHhCCCCccEEecCCcch
Q 019198 170 ERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYG 249 (344)
Q Consensus 170 eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~vD~~~~~Lv~~P~~fdVIvt~NlfG 249 (344)
|||+|+||+||++|++|+||++||+|||++|+|||+++|+|++++||||+++++|||++|||||++|++||||||+||||
T Consensus 163 ~RIa~~AF~~A~~r~~k~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfG 242 (344)
T PRK03437 163 ERVVRDAFERAQKRPRKHLTLVHKTNVLTFAGDLWQRTVDEVAAEYPDVTVDYQHVDAATIFMVTDPSRFDVIVTDNLFG 242 (344)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEECCccccccchHHHHHHHHHHhhCCCceEeehhHHHHHHHHhcCcccCcEEEEcccch
Confidence 99999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhcCCCccccCcccCC---------------CcCccCcCCCChhHHHHHHHHHhhhcCchHHHHHHHHHHHH
Q 019198 250 NLVSNTAAGIAGGTGVMPGAGNVG---------------NEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKR 314 (344)
Q Consensus 250 DIlSDlaa~l~GglGl~pSa~nig---------------APdiaGk~iANP~a~Ils~ammL~~lg~~~~a~~i~~Av~~ 314 (344)
|||||++++++||+||+||+ |+| ||||||||+|||+|||||++|||+|||++++|++|++||++
T Consensus 243 DILSDlaa~l~GglGl~pSa-nig~~g~~~a~FEp~HGSAPdiAGk~iANP~a~IlS~amML~~lg~~~~a~~I~~Av~~ 321 (344)
T PRK03437 243 DIITDLAAAVTGGIGLAASG-NINPTGTNPSMFEPVHGSAPDIAGQGIADPTAAILSVALLLDHLGEEDAAARIEAAVEA 321 (344)
T ss_pred hhhhHHHHHhcCCcccccee-eecCCCCcceeEecCCCCchhhcCCCccChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999 995 99999999999999999999999999999999999999999
Q ss_pred HHHcCcccCCCCCCCCcHHHHHHHHHHhc
Q 019198 315 VISEEKYRTKDLGGGCTTQQIVDAVIANL 343 (344)
Q Consensus 315 ~l~~g~~~T~DlgG~~sT~e~~~aV~~~l 343 (344)
++++| +||.+||+||+|+|+++|
T Consensus 322 ~l~~g------~gg~~~T~e~~~ai~~~l 344 (344)
T PRK03437 322 DLAER------GKMGRSTAEVGDRIAARL 344 (344)
T ss_pred HHHhc------CCCCcCHHHHHHHHHhhC
Confidence 99998 489999999999999876
No 12
>TIGR02924 ICDH_alpha isocitrate dehydrogenase. This family of mainly alphaproteobacterial enzymes is a member of the isocitrate/isopropylmalate dehydrogenase superfamily described by pfam00180. Every member of the seed of this model appears to have a TCA cycle lacking only a determined isocitrate dehydrogenase. The precise identity of the cofactor (NADH -- 1.1.1.41 vs. NADPH -- 1.1.1.42) is unclear.
Probab=100.00 E-value=3.4e-106 Score=807.57 Aligned_cols=311 Identities=40% Similarity=0.631 Sum_probs=301.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEeeCC------CCCCcHHHHHHHHhcCeEEEccccCCCCCCCCchh
Q 019198 31 AVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD------MKRVPQQVLDSIRKNKVCLKGGLKTPVGGGVSSLN 104 (344)
Q Consensus 31 ~I~vi~GDGIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~------g~~lp~~~~~~~~~~da~l~G~~~~p~~~~~~s~~ 104 (344)
+|+||||||||||||+++++||++++++++|+++++|.+ |+++|++++++|+++|++||||+++|.+.+++|.+
T Consensus 2 ~I~vipGDGIGPEV~~aa~~VL~a~~~~i~~~~~~~G~~~~~~~gg~~lpdetl~~i~~~da~LkG~i~tp~~~~~~s~~ 81 (473)
T TIGR02924 2 PITVAYGDGIGPEIMEAVLLILKEAEAPIDIETIEIGEKVYKKGWPSGISPSSWESIRRTKVLLKAPITTPQGGGHKSLN 81 (473)
T ss_pred eEEEEcCCcccHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHhhCCCCCCHHHHHHHHHCCEEEECcccCCCccCcccHH
Confidence 699999999999999999999999999999999999986 48999999999999999999999999766788999
Q ss_pred HHHHhhcCcEEEEEEeecC-CCCCCCcccccEEEEecCCceeeecccceeeCCEEEEEEEeeHHHHHHHHHHHHHHHHhc
Q 019198 105 VQLRKELDLYAALVNCFNL-PGLPTRHQNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLN 183 (344)
Q Consensus 105 ~~LR~~ldlyanvRP~~~~-pg~~~~~~~vDivIvREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~~r 183 (344)
+.|||+||||||+||||++ |+++++++++|+|||||||||+|+|.|++..+++++++++|||+++|||+|+||+||++|
T Consensus 82 ~~LRk~ldLYANvRPv~~~~p~~~~~~~~vDiVIVRENtEGlY~G~e~~~~~~~~~~~kviTr~g~eRI~r~AFe~A~~r 161 (473)
T TIGR02924 82 VTLRKTLGLYANIRPCVSYHPFIETKSPNLNIVIVRENEEDLYTGIEYRQTPDTYECTKLITRSGSEKICRYAFEYARKH 161 (473)
T ss_pred HHHHHHcCCeEEEEEeeccCCCCCCccCCcCEEEEEeccCceecCceeeccCChheEeEecCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999 999999999999999999999999999987778899999999999999999999999999
Q ss_pred CCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeeeHhHHHHHHHhCCCCccEEecCCcchhhhhhhhhhhcCCC
Q 019198 184 YRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGT 263 (344)
Q Consensus 184 ~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~vD~~~~~Lv~~P~~fdVIvt~NlfGDIlSDlaa~l~Ggl 263 (344)
+|||||++||+||||.|||||+++|+|++++||+|+++|++||+++||||++|++||||||+|||||||||++|+++||+
T Consensus 162 ~rkkVT~v~KaNVmk~tdglf~e~~~eva~eyPdI~~e~~~VDa~a~~Lv~~P~~FDVIVt~NLfGDILSDlaA~l~Gsl 241 (473)
T TIGR02924 162 NRKKVTCLTKDNIMKMTDGIFHKIFDKIAAEYPDIESEHYIVDIGMARLATNPENFDVIVTPNLYGDILSDVAAEISGSV 241 (473)
T ss_pred CCCeEEEEECCccccccchhHHHHHHHHHhhCCCcEEeeHHHHHHHHHHhhCcccceEEEEccccchhhhHHHHHhcCCc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcccCC------------CcCccCcCCCChhHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHcCcccCCCCC----
Q 019198 264 GVMPGAGNVG------------NEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEEKYRTKDLG---- 327 (344)
Q Consensus 264 Gl~pSa~nig------------APdiaGk~iANP~a~Ils~ammL~~lg~~~~a~~i~~Av~~~l~~g~~~T~Dlg---- 327 (344)
||+||+ |+| ||||||||+|||+|+|||++|||+|||+.++|++|++||.++|++| ++|+|||
T Consensus 242 GlapSa-NiG~~~amFEpvHGSAPdIAGk~iANP~a~IlSaamML~hLG~~~~A~~I~~AV~~vl~~G-~~T~Dl~~~~~ 319 (473)
T TIGR02924 242 GLAGSA-NIGEEYAMFEAVHGSAPDIAGQNIANPSGLLNAAIQMLVHIGQSDIAQLIYNAWLKTLEDG-VHTADIYNEKT 319 (473)
T ss_pred Ccccce-ecCCCcceeecCCCchhhhCCCCccChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcC-CcCcccccccc
Confidence 999999 998 9999999999999999999999999999999999999999999999 5899994
Q ss_pred --CCCcHHHHHHHHHHhc
Q 019198 328 --GGCTTQQIVDAVIANL 343 (344)
Q Consensus 328 --G~~sT~e~~~aV~~~l 343 (344)
|++||+||+|+|+++|
T Consensus 320 ~gg~~sT~e~~daVi~~l 337 (473)
T TIGR02924 320 SKQKVGTKEFAEAVTANL 337 (473)
T ss_pred CCCCcCHHHHHHHHHHHh
Confidence 6799999999999987
No 13
>PLN02329 3-isopropylmalate dehydrogenase
Probab=100.00 E-value=3.2e-105 Score=790.39 Aligned_cols=311 Identities=31% Similarity=0.507 Sum_probs=291.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHc----CCCeeEEEEEeeCC-----CCCCcHHHHHHHHhcCeEEEccccCCCC-C
Q 019198 29 PRAVTLIPGDGIGPLVTNAVEQVMEAM----HAPIYFEKYEVHGD-----MKRVPQQVLDSIRKNKVCLKGGLKTPVG-G 98 (344)
Q Consensus 29 ~~~I~vi~GDGIGpEV~~~~~~vl~~~----~~~i~~~~~~~g~~-----g~~lp~~~~~~~~~~da~l~G~~~~p~~-~ 98 (344)
.|+|+||||||||||||+++++||+++ +++++|+++++|++ |+++|+++++.|+++|++||||+++|.. .
T Consensus 46 ~~~IavipGDGIGPEV~~aa~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lP~~tl~~~~~~DaiL~Gavg~p~~~~ 125 (409)
T PLN02329 46 RYNIALLPGDGIGPEVISVAKNVLQKAGSLEGLEFDFQEMPVGGAALDLVGVPLPEETFTAAKQSDAILLGAIGGYKWDK 125 (409)
T ss_pred eEEEEEECCCcccHHHHHHHHHHHHHHHhhcCCceEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECcccCCCCCC
Confidence 589999999999999999999999976 58999999999986 9999999999999999999999999952 1
Q ss_pred CC-----CchhHHHHhhcCcEEEEEEeecCCCCCC--Cc-----ccccEEEEecCCceeeeccccee-----eCCEEEEE
Q 019198 99 GV-----SSLNVQLRKELDLYAALVNCFNLPGLPT--RH-----QNVDIVVIRENTEGEYSGLEHEV-----VPGVVESL 161 (344)
Q Consensus 99 ~~-----~s~~~~LR~~ldlyanvRP~~~~pg~~~--~~-----~~vDivIvREnteG~Y~g~e~~~-----~~~va~~~ 161 (344)
+. .++++.|||+||||+|+||||++||+++ |+ +++|+|||||||||+|+|.++.. .+++++++
T Consensus 126 ~~~~~~~e~~ll~LRk~ldLyaNvRPvr~~pg~~~~splk~~~~~~iD~vIVREnTEG~Y~G~~~~~~~~~~~~~~a~~~ 205 (409)
T PLN02329 126 NEKHLRPEMALFYLRRDLKVFANLRPATVLPQLVDASTLKKEVAEGVDMMIVRELTGGIYFGEPRGITINENGEEVGVST 205 (409)
T ss_pred CcccccccccHHHHHHHcCCeEeeeeeeccCCCCCcCcccccccCCceEEEEEECCCCeecCCCcceecccCCceeEEEe
Confidence 11 2569999999999999999999999975 54 58999999999999999987432 24589999
Q ss_pred EEeeHHHHHHHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeeeHhHHHHHHHhCCCCccE
Q 019198 162 KVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDV 241 (344)
Q Consensus 162 ~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~vD~~~~~Lv~~P~~fdV 241 (344)
++|||+++|||+|+||+||++| +++||+|||+|||+ +++||+++|+||+++||+|+++++|||++|||||++|++|||
T Consensus 206 ~~iTr~~~eRI~r~AFe~A~~r-~~kVT~v~KaNVl~-t~~lf~~~~~evA~eyPdV~~~~~~VDa~a~~LV~~P~~FDV 283 (409)
T PLN02329 206 EIYAAHEIDRIARVAFETARKR-RGKLCSVDKANVLD-ASILWRKRVTALASEYPDVELSHMYVDNAAMQLIRDPKQFDT 283 (409)
T ss_pred EEecHHHHHHHHHHHHHHHHHc-CCeEEEEECCCCcc-chHHHHHHHHHHHhhCCCcccchhHHHHHHHHHhcCchhCCE
Confidence 9999999999999999999998 46999999999999 999999999999999999999999999999999999999999
Q ss_pred EecCCcchhhhhhhhhhhcCCCccccCcccCC-------------CcCccCcCCCChhHHHHHHHHHhhh-cCchHHHHH
Q 019198 242 MVTPNLYGNLVSNTAAGIAGGTGVMPGAGNVG-------------NEKVVEQKKANPVALLLSSAMMLRH-LQFPSFADR 307 (344)
Q Consensus 242 Ivt~NlfGDIlSDlaa~l~GglGl~pSa~nig-------------APdiaGk~iANP~a~Ils~ammL~~-lg~~~~a~~ 307 (344)
|||+|||||||||++|+++||+||+||+ ||| ||||||||+|||+|+|||++|||+| ||++++|++
T Consensus 284 IVt~NLfGDILSDlaa~l~GglGlaPSa-nig~~~~a~FEpvHGSAPdIAGk~iANP~A~ILS~amML~~~Lg~~~~A~~ 362 (409)
T PLN02329 284 IVTNNIFGDILSDEASMITGSIGMLPSA-SLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLKYGLGEEKAAKR 362 (409)
T ss_pred EEEcCcccccccHHHHHhcCCcccCcee-ecCCCCceeeeccCCCchhhcCCcccChHHHHHHHHHHHhhhCCCHHHHHH
Confidence 9999999999999999999999999999 998 9999999999999999999999999 999999999
Q ss_pred HHHHHHHHHHcCcccCCCC---CCC-CcHHHHHHHHHHhc
Q 019198 308 LETAVKRVISEEKYRTKDL---GGG-CTTQQIVDAVIANL 343 (344)
Q Consensus 308 i~~Av~~~l~~g~~~T~Dl---gG~-~sT~e~~~aV~~~l 343 (344)
|++||.++|++| .+|+|| ||+ +||+||+|+|+++|
T Consensus 363 I~~AV~~vl~~g-~~T~Dl~~~Gg~~~~T~e~~daIi~~l 401 (409)
T PLN02329 363 IEDAVVDALNKG-FRTGDIYSPGNKLVGCKEMGEEVLKSV 401 (409)
T ss_pred HHHHHHHHHHcC-CcCcccccCCCCccCHHHHHHHHHHHH
Confidence 999999999999 489999 776 89999999999987
No 14
>TIGR00169 leuB 3-isopropylmalate dehydrogenase. This model will not find all isopropylmalate dehydrogenases; the enzyme from Sulfolobus sp. strain 7 is more similar to mitochondrial NAD-dependent isocitrate dehydrogenases than to other known isopropylmalate dehydrogenases and was omitted to improve the specificity of the model. It scores below the cutoff and below some enzymes known not to be isopropylmalate dehydrogenase.
Probab=100.00 E-value=1.9e-104 Score=775.81 Aligned_cols=309 Identities=37% Similarity=0.555 Sum_probs=289.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHc----CCCeeEEEEEeeCC-----CCCCcHHHHHHHHhcCeEEEccccCCCC-CCC
Q 019198 31 AVTLIPGDGIGPLVTNAVEQVMEAM----HAPIYFEKYEVHGD-----MKRVPQQVLDSIRKNKVCLKGGLKTPVG-GGV 100 (344)
Q Consensus 31 ~I~vi~GDGIGpEV~~~~~~vl~~~----~~~i~~~~~~~g~~-----g~~lp~~~~~~~~~~da~l~G~~~~p~~-~~~ 100 (344)
+|+||||||||||||+++++||+++ +++++|+++++|.+ |+.+|++++++||++|++||||+++|.. ...
T Consensus 1 ~i~vipGDGIGpEV~~aa~~vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~l~G~v~~p~~~~~~ 80 (349)
T TIGR00169 1 KIAVLPGDGIGPEITAEALKVLKAVAERFGLKFEFEEHLIGGAAIDATGQPLPEETLKACKEADAVLLGAVGGPKWDNLP 80 (349)
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHHhhcCCceEEEEEeCCHHHHHHHCCCCCHHHHHHHHHCCEEEECcccCCCCCCCC
Confidence 5899999999999999999999976 68999999999987 9999999999999999999999999952 111
Q ss_pred -----CchhHHHHhhcCcEEEEEEeecCCCCCC--Cc-----ccccEEEEecCCceeeecccceee----CCEEEEEEEe
Q 019198 101 -----SSLNVQLRKELDLYAALVNCFNLPGLPT--RH-----QNVDIVVIRENTEGEYSGLEHEVV----PGVVESLKVI 164 (344)
Q Consensus 101 -----~s~~~~LR~~ldlyanvRP~~~~pg~~~--~~-----~~vDivIvREnteG~Y~g~e~~~~----~~va~~~~~~ 164 (344)
.+.++.|||+||||+|+||||++||+++ |+ +++|++||||||||+|+|.+++.. +++++++++|
T Consensus 81 ~~~~~~~~~~~LR~~ldlyanvRP~r~~~g~~~~~p~~~~~~~~iD~vivREntEG~Y~g~~~~~~~~~~~~~a~~~~~~ 160 (349)
T TIGR00169 81 RDQRPEQGLLKLRKSLDLFANLRPAKVFPSLEDLSPLKEEIAKGVDFVVVRELTGGIYFGEPKGRFGAGGEGEAWDTEVY 160 (349)
T ss_pred ccccchhhHHHHHHHcCCeEEEEEeeccCCCCccCCCcccccCCceEEEEeeccCCeecCCCccccCCCCcceEEEEEEe
Confidence 2239999999999999999999999975 54 689999999999999999976322 3689999999
Q ss_pred eHHHHHHHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeeeHhHHHHHHHhCCCCccEEec
Q 019198 165 TKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVT 244 (344)
Q Consensus 165 Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~vD~~~~~Lv~~P~~fdVIvt 244 (344)
||+++|||+|+||+||++|+ ++||+|||+|||| |+++|+++|+||+++||+|++++++||+++||||++|++||||||
T Consensus 161 Tr~~~eRI~r~AF~~A~~r~-~~Vt~v~KaNvlk-t~glf~~~~~eva~~yP~I~~~~~~vDa~~~~Lv~~P~~fDViv~ 238 (349)
T TIGR00169 161 TKPEIERIARVAFEMARKRR-KKVTSVDKANVLE-SSRLWRKTVEEIAKEYPDVELEHQYIDNAAMQLVKSPTQFDVVVT 238 (349)
T ss_pred eHHHHHHHHHHHHHHHHHcC-CcEEEEECCcccc-hhHHHHHHHHHHHhhCCCceEEeeeHHHHHHHHHhCccCceEEEE
Confidence 99999999999999999995 5999999999999 999999999999999999999999999999999999999999999
Q ss_pred CCcchhhhhhhhhhhcCCCccccCcccCC-------------CcCccCcCCCChhHHHHHHHHHhhh-cCchHHHHHHHH
Q 019198 245 PNLYGNLVSNTAAGIAGGTGVMPGAGNVG-------------NEKVVEQKKANPVALLLSSAMMLRH-LQFPSFADRLET 310 (344)
Q Consensus 245 ~NlfGDIlSDlaa~l~GglGl~pSa~nig-------------APdiaGk~iANP~a~Ils~ammL~~-lg~~~~a~~i~~ 310 (344)
+|||||||||++++++||+||+||+ |+| ||||||||+|||+|+|||++|||+| ||+.++|++|++
T Consensus 239 ~NlfGDILSDlaa~l~GglGlapSa-nig~~~~a~FEp~HGSAPdiAGk~iANP~a~IlS~amML~~~lg~~~~a~~i~~ 317 (349)
T TIGR00169 239 GNIFGDILSDEASVIPGSLGMLPSA-SLGSDGFGLFEPVHGSAPDIAGKGIANPIAQILSAAMMLRYSFNLEEAADAIEA 317 (349)
T ss_pred cCcccchhhHHHHHhcCCCCCCceE-EECCCCCEEEECCCCChhHhcCCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 9999999999999999999999999 998 9999999999999999999999999 899999999999
Q ss_pred HHHHHHHcCcccCCCCCCCCcHHHHHHHHHHhc
Q 019198 311 AVKRVISEEKYRTKDLGGGCTTQQIVDAVIANL 343 (344)
Q Consensus 311 Av~~~l~~g~~~T~DlgG~~sT~e~~~aV~~~l 343 (344)
||++++++| .+|+||||+++|+||+++|++.|
T Consensus 318 Av~~~l~~g-~~T~DlgG~~~t~e~t~av~~~~ 349 (349)
T TIGR00169 318 AVKKVLAEG-YRTPDLGSSATTEVGTAEMGEEL 349 (349)
T ss_pred HHHHHHHcC-CCccccCCCcchHHHHHHHHhcC
Confidence 999999999 58999999999999999999865
No 15
>PRK06451 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=9.9e-104 Score=782.62 Aligned_cols=312 Identities=34% Similarity=0.581 Sum_probs=294.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHc---C----CCeeEEEEEeeCC-----CCCCcHHHHHHHHhcCeEEEccccCCC
Q 019198 29 PRAVTLIPGDGIGPLVTNAVEQVMEAM---H----APIYFEKYEVHGD-----MKRVPQQVLDSIRKNKVCLKGGLKTPV 96 (344)
Q Consensus 29 ~~~I~vi~GDGIGpEV~~~~~~vl~~~---~----~~i~~~~~~~g~~-----g~~lp~~~~~~~~~~da~l~G~~~~p~ 96 (344)
.+ |+||||||||||||+++++||+++ + ++|+|.++++|.+ |+++|++++++|+++|++||||+++|.
T Consensus 24 ~~-I~vipGDGIGpEV~~aa~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~GavgtP~ 102 (412)
T PRK06451 24 PI-ILYVEGDGIGPEITHAAMKVINKAVEKAYGSDREIKWVEVLAGDKAEKLTGNRFPKESEELIEKYRVLLKGPLETPI 102 (412)
T ss_pred cE-EEEecCCcccHHHHHHHHHHHHHHHHhccCCCCceEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECcccCCC
Confidence 35 999999999999999999999965 2 5899999999987 999999999999999999999999997
Q ss_pred CCCCCchhHHHHhhcCcEEEEEEeecCCCCCCCc---ccccEEEEecCCceeeeccccee--------------------
Q 019198 97 GGGVSSLNVQLRKELDLYAALVNCFNLPGLPTRH---QNVDIVVIRENTEGEYSGLEHEV-------------------- 153 (344)
Q Consensus 97 ~~~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~---~~vDivIvREnteG~Y~g~e~~~-------------------- 153 (344)
+++++|+++.|||+||||+|+||||++||+++|+ +++|||||||||||+|+|.+++.
T Consensus 103 ~~~~~s~~l~LRk~ldLyaNvRPvk~~pgl~sp~~~~~~iD~vIvREnTeG~Y~g~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (412)
T PRK06451 103 GKGWKSINVAIRLMLDLYANIRPVKYIPGIESPLKNPEKIDLIIFRENTDDLYRGIEYPYDSEEAKKIRDFLRKELGVEV 182 (412)
T ss_pred CcCCcChhHHHHHHcCCeEeeceeecCCCCCCcccCcCCccEEEEEeccCCeeecccccccccccccccccccccccccc
Confidence 6678899999999999999999999999999987 68999999999999999998421
Q ss_pred eCCEEEEEEEeeHHHHHHHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHh-hCCC---------------
Q 019198 154 VPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVAT-KYPS--------------- 217 (344)
Q Consensus 154 ~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~-eyp~--------------- 217 (344)
..++++++++|||.+++||+|+||+||++|++||||+|||+||||+|||+|+++|+|+++ +|||
T Consensus 183 ~~~~a~~~~~~t~~~~eRIar~AF~~A~~r~~kkVt~v~KaNVlk~t~glf~~~~~eva~~eypd~~~~~~~~~~~y~~~ 262 (412)
T PRK06451 183 EDDTGIGIKLISKFKTQRIARMAIKYAIDHKRKKVTIMHKGNVMKYTEGAFREWAYEVALKEFRDYVVTEEEVTKNYNGV 262 (412)
T ss_pred ccceecceeeeeHHHHHHHHHHHHHHHHhcCCCcEEEEECCCccccchhhHHHHHHHHHHHhCCcccccccchhhccccc
Confidence 124678999999999999999999999999888999999999999999999999999996 8995
Q ss_pred -----ceeeeeeHhHHHHHHHhCCCCccEEecCCcchhhhhhhhhhhcCCCccccCcccCC------------CcCccCc
Q 019198 218 -----IKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGNVG------------NEKVVEQ 280 (344)
Q Consensus 218 -----I~~~~~~vD~~~~~Lv~~P~~fdVIvt~NlfGDIlSDlaa~l~GglGl~pSa~nig------------APdiaGk 280 (344)
|+++|+|||++|||||++|++||||||+|||||||||++|+++||+||+||+ |+| |||||||
T Consensus 263 ~~~~~I~~~~~~vDa~~~~Lv~~P~~FDVivt~NlfGDILSDlaa~l~GglGl~pSa-nig~~~alFEpvHGSAPdiAGk 341 (412)
T PRK06451 263 PPSGKVIINDRIADNMFQQIIIRPDEYDIILAPNVNGDYISDAAGALVGNIGMLGGA-NIGDTGGMFEAIHGTAPKYAGK 341 (412)
T ss_pred cccCceEEEeeeHHHHHHHHhcCcccCcEEEEcCcccchhhHHHHHhcCchhhccee-eeCCCCceeECCCCCccccCCC
Confidence 9999999999999999999999999999999999999999999999999999 998 9999999
Q ss_pred CCCChhHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHcCcccCCCC----CCC-CcHHHHHHHHHHhc
Q 019198 281 KKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEEKYRTKDL----GGG-CTTQQIVDAVIANL 343 (344)
Q Consensus 281 ~iANP~a~Ils~ammL~~lg~~~~a~~i~~Av~~~l~~g~~~T~Dl----gG~-~sT~e~~~aV~~~l 343 (344)
|+|||+|+|||++|||+|||++++|++|++||.+++++|. +|+|| ||. ++|+||+|+|+++|
T Consensus 342 ~iANP~a~IlS~amML~~lg~~~~A~~I~~Av~~vl~~G~-~T~Dl~~~~gg~~~~T~e~~daI~~~l 408 (412)
T PRK06451 342 NVANPTGIIKGGELMLRFMGWDKAADLIDKAIMESIKQKK-VTQDLARFMGVRALSTTEYTDELISII 408 (412)
T ss_pred CCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCC-cCccccccCCCCccCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999995 89999 555 79999999999986
No 16
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases. This family is closely related to both the LeuB genes found in TIGR00169 and the mitochondrial eukaryotic isocitrate dehydratases found in TIGR00175. All of these are included within the broader subfamily model, pfam00180.
Probab=100.00 E-value=1.7e-103 Score=761.91 Aligned_cols=304 Identities=42% Similarity=0.664 Sum_probs=293.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEeeCC-----CCCCcHHHHHHHHhcCeEEEccccCCCCCCCCchhHH
Q 019198 32 VTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD-----MKRVPQQVLDSIRKNKVCLKGGLKTPVGGGVSSLNVQ 106 (344)
Q Consensus 32 I~vi~GDGIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~-----g~~lp~~~~~~~~~~da~l~G~~~~p~~~~~~s~~~~ 106 (344)
|++|||||||||||+++++||++.+++++|+++++|.+ |+++|++++++|+++|++||||+++|...+++|+++.
T Consensus 1 i~~ipGDGIGpEv~~~a~~vl~~~~~~i~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~l~Gavg~p~~~~~~s~~~~ 80 (322)
T TIGR02088 1 VAVIPGDGIGPEVIEAAIRILNKLGLEIEFIEFEAGDEALKKYGSALPEDTLEEIRKADAILFGAVTTPANPGYKSVIVT 80 (322)
T ss_pred CEEeCCCCccHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHhCCCCCHHHHHHHHHCCEEEECcccCCCCCCccChHHH
Confidence 68999999999999999999999999999999999987 9999999999999999999999999976678899999
Q ss_pred HHhhcCcEEEEEEeecCCCCCCCcc-cccEEEEecCCceeeecccceeeCCEEEEEEEeeHHHHHHHHHHHHHHHHhcCC
Q 019198 107 LRKELDLYAALVNCFNLPGLPTRHQ-NVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYR 185 (344)
Q Consensus 107 LR~~ldlyanvRP~~~~pg~~~~~~-~vDivIvREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~ 185 (344)
|||+||||+|+||||++||++++++ ++|++||||||||+|+|.++. .+++++++++|||+++|||+|+||++|++|+
T Consensus 81 LR~~ldlyanvRP~r~~~g~~~~~~~~iD~vivREnteG~Y~g~~~~-~~~~a~~~~~~tr~~~eRi~r~AF~~A~~r~- 158 (322)
T TIGR02088 81 LRKELDLYANVRPAKSLPGIPDLYPNGKDIVIVRENTEGLYAGFEFG-FSDRAIAIRVITREGSERIARFAFNLAKERN- 158 (322)
T ss_pred HHHHcCCEEEEEEeeccCCCCCCCCCCCCEEEEEeCcCCeeeccccc-cCcceEEEEEecHHHHHHHHHHHHHHHHHcC-
Confidence 9999999999999999999999886 899999999999999999865 3568999999999999999999999999995
Q ss_pred CceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeeeHhHHHHHHHhCCCCccEEecCCcchhhhhhhhhhhcCCCcc
Q 019198 186 KKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGV 265 (344)
Q Consensus 186 ~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~vD~~~~~Lv~~P~~fdVIvt~NlfGDIlSDlaa~l~GglGl 265 (344)
+|||++||+|||+.|+|||+++|+|++++|| |+++|++||++|||||++|++||||||+|||||||||++|+++||+||
T Consensus 159 ~~Vt~v~KaNvl~~t~glf~~~~~eva~~yp-v~~~~~~vDa~~~~lv~~P~~fdViv~~NlfGDIlSDlaa~l~GglGl 237 (322)
T TIGR02088 159 RKVTCVHKANVLKGTDGLFREVCREIAKRYG-VEYRDMYVDSAAMNLVKDPWRFDVIVTTNMFGDILSDLASALAGSLGL 237 (322)
T ss_pred CcEEEEeCCcchhhhHHHHHHHHHHHHHhCC-eeeeeeeHHHHHHHHhhCCcCceEEEecCcccchhhHHHHhhcCCCCC
Confidence 4699999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred ccCcccCC------------CcCccCcCCCChhHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHcCcccCCCCCCCCcHH
Q 019198 266 MPGAGNVG------------NEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEEKYRTKDLGGGCTTQ 333 (344)
Q Consensus 266 ~pSa~nig------------APdiaGk~iANP~a~Ils~ammL~~lg~~~~a~~i~~Av~~~l~~g~~~T~DlgG~~sT~ 333 (344)
+||+ |+| ||||||||+|||+|||+|++|||+|+|++++|++|++||++++++|. +|+||||++||+
T Consensus 238 ~pSa-nig~~~a~fep~hGsa~diaG~~~aNp~a~i~A~~~~l~~~g~~~~a~~i~~Av~~~l~~g~-~T~DlgG~~~T~ 315 (322)
T TIGR02088 238 APSA-NIGDRKALFEPVHGSAPDIAGKGIANPTAAILSVAMMLDYLGELEKGKLVWEAVEYYIIEGK-KTPDLGGTAKTK 315 (322)
T ss_pred Ccee-EEcCCceEEecCCCChhHhCCCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCC-CCcccCCCcCHH
Confidence 9999 998 99999999999999999999999999999999999999999999995 899999999999
Q ss_pred HHHHHHH
Q 019198 334 QIVDAVI 340 (344)
Q Consensus 334 e~~~aV~ 340 (344)
||+|+|+
T Consensus 316 e~~~av~ 322 (322)
T TIGR02088 316 EVGDEIA 322 (322)
T ss_pred HHHHHhC
Confidence 9999985
No 17
>PRK00772 3-isopropylmalate dehydrogenase; Provisional
Probab=100.00 E-value=2.6e-103 Score=769.43 Aligned_cols=310 Identities=38% Similarity=0.582 Sum_probs=293.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHc----CCCeeEEEEEeeCC-----CCCCcHHHHHHHHhcCeEEEccccCCCC--
Q 019198 29 PRAVTLIPGDGIGPLVTNAVEQVMEAM----HAPIYFEKYEVHGD-----MKRVPQQVLDSIRKNKVCLKGGLKTPVG-- 97 (344)
Q Consensus 29 ~~~I~vi~GDGIGpEV~~~~~~vl~~~----~~~i~~~~~~~g~~-----g~~lp~~~~~~~~~~da~l~G~~~~p~~-- 97 (344)
+++|+||||||||||||+++++||+++ +++++|.++++|.+ |+++|++++++||++|++||||+++|..
T Consensus 2 ~~~I~vipGDGIGpEV~~aa~~vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~Gav~~p~~~~ 81 (358)
T PRK00772 2 TYKIAVLPGDGIGPEVMAEAVKVLDAVAEKFGFDFEFEEALVGGAAIDAHGVPLPEETLEACRAADAVLLGAVGGPKWDN 81 (358)
T ss_pred ceEEEEECCCcccHHHHHHHHHHHHHHHhhcCCceEEEEecCcHHHHHHHCCCCCHHHHHHHHHCCEEEECccCCCCCCC
Confidence 479999999999999999999999976 78999999999986 9999999999999999999999999942
Q ss_pred -----CCCCchhHHHHhhcCcEEEEEEeecCCCCCC--Cc-----ccccEEEEecCCceeeecccceee----CCEEEEE
Q 019198 98 -----GGVSSLNVQLRKELDLYAALVNCFNLPGLPT--RH-----QNVDIVVIRENTEGEYSGLEHEVV----PGVVESL 161 (344)
Q Consensus 98 -----~~~~s~~~~LR~~ldlyanvRP~~~~pg~~~--~~-----~~vDivIvREnteG~Y~g~e~~~~----~~va~~~ 161 (344)
.+.++ ++.|||+||||+|+||||++||+++ |+ +++|+|||||||||+|+|.+++.. .++++++
T Consensus 82 ~~~~~~~~~~-~~~LR~~ldlyanvRP~r~~pg~~~~~plk~~~~~~iD~vivREntEG~Y~g~~~~~~~~~~~~~a~~~ 160 (358)
T PRK00772 82 LPPDVRPERG-LLALRKELGLFANLRPAKLYPGLADASPLKPEIVAGLDILIVRELTGGIYFGEPRGREGLGGEERAFDT 160 (358)
T ss_pred CCccCCChhh-HHHHHHHcCCeEEEeEeecCCCCCCcCCCcccccCCccEEEEecccCCeecCCcccccCCCCceeEEEE
Confidence 14456 9999999999999999999999986 65 389999999999999999986543 3478999
Q ss_pred EEeeHHHHHHHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeeeHhHHHHHHHhCCCCccE
Q 019198 162 KVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDV 241 (344)
Q Consensus 162 ~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~vD~~~~~Lv~~P~~fdV 241 (344)
++|||+++|||+|+||+||++| +++||++||+|||| ++|+|+++|+||+++||+|++++++||+++||||++|++|||
T Consensus 161 ~~iTr~~~~Ri~r~Af~~A~~r-~~~Vt~v~KaNvl~-~~glf~~~~~eva~eyp~i~~~~~~vDa~~~~lv~~P~~fDV 238 (358)
T PRK00772 161 MVYTREEIERIARVAFELARKR-RKKVTSVDKANVLE-SSRLWREVVTEVAKEYPDVELSHMYVDNAAMQLVRNPKQFDV 238 (358)
T ss_pred EEeeHHHHHHHHHHHHHHHHHc-CCcEEEEECccccc-cchHHHHHHHHHHhHCCCceEEEEeHHHHHHHHhhCcccCeE
Confidence 9999999999999999999998 56999999999999 899999999999999999999999999999999999999999
Q ss_pred EecCCcchhhhhhhhhhhcCCCccccCcccCC-------------CcCccCcCCCChhHHHHHHHHHhhh-cCchHHHHH
Q 019198 242 MVTPNLYGNLVSNTAAGIAGGTGVMPGAGNVG-------------NEKVVEQKKANPVALLLSSAMMLRH-LQFPSFADR 307 (344)
Q Consensus 242 Ivt~NlfGDIlSDlaa~l~GglGl~pSa~nig-------------APdiaGk~iANP~a~Ils~ammL~~-lg~~~~a~~ 307 (344)
|||+|||||||||++|+++||+||+||+ ||| ||||||||+|||+|+|||++|||+| ||++++|++
T Consensus 239 iv~~NlfGDIlSDlaa~l~GglGl~psa-nig~~~~a~FEp~HGSApdiAGk~~aNP~a~Ils~ammL~~~lg~~~~a~~ 317 (358)
T PRK00772 239 IVTENLFGDILSDEAAMLTGSLGMLPSA-SLGESGPGLYEPIHGSAPDIAGKGIANPIATILSAAMMLRYSLGLEEAADA 317 (358)
T ss_pred EeecCcccccccHHHHHhcCCCCCCcce-EeCCCCceeeecCCCchhhhcCCCCcCCHHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999999999999999999 997 9999999999999999999999999 999999999
Q ss_pred HHHHHHHHHHcCcccCCCC---CCCCcHHHHHHHHHHhc
Q 019198 308 LETAVKRVISEEKYRTKDL---GGGCTTQQIVDAVIANL 343 (344)
Q Consensus 308 i~~Av~~~l~~g~~~T~Dl---gG~~sT~e~~~aV~~~l 343 (344)
|++||.+++++| .+|+|| ||++||+||+|+|+++|
T Consensus 318 i~~Av~~~l~~g-~~T~Dl~~~gg~~~T~e~~~av~~~l 355 (358)
T PRK00772 318 IEAAVEKVLAQG-YRTADIAEGGGKVSTSEMGDAILAAL 355 (358)
T ss_pred HHHHHHHHHHcC-CcCcccccCCCCcCHHHHHHHHHHHh
Confidence 999999999999 589999 88999999999999987
No 18
>PRK07006 isocitrate dehydrogenase; Reviewed
Probab=100.00 E-value=1e-102 Score=776.03 Aligned_cols=313 Identities=36% Similarity=0.587 Sum_probs=292.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHc---C----CCeeEEEEEeeCC-----CC--CCcHHHHHHHHhcCeEEEcccc
Q 019198 28 SPRAVTLIPGDGIGPLVTNAVEQVMEAM---H----APIYFEKYEVHGD-----MK--RVPQQVLDSIRKNKVCLKGGLK 93 (344)
Q Consensus 28 ~~~~I~vi~GDGIGpEV~~~~~~vl~~~---~----~~i~~~~~~~g~~-----g~--~lp~~~~~~~~~~da~l~G~~~ 93 (344)
+++ |++|||||||||||+++++||+++ + ++++|+++++|.+ |+ ++|++++++|+++|++||||++
T Consensus 19 ~~~-I~vipGDGIGpEV~~aa~~vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~~~lp~~tl~~~~~~da~l~G~i~ 97 (409)
T PRK07006 19 NPI-IPFIEGDGIGPDITPAMLKVVDAAVEKAYKGERKISWMEIYAGEKATKVYGEDVWLPEETLDLIREYRVAIKGPLT 97 (409)
T ss_pred CcE-EEEeCCCcccHHHHHHHHHHHHHHHHhccCCCCceEEEEEecCHHHHHhhCCcCCCCHHHHHHHHHCCEEEECccc
Confidence 335 999999999999999999999975 2 4899999988886 88 9999999999999999999999
Q ss_pred CCCCCCCCchhHHHHhhcCcEEEEEEeecCCCCCCCc---ccccEEEEecCCceeeeccccee-----------------
Q 019198 94 TPVGGGVSSLNVQLRKELDLYAALVNCFNLPGLPTRH---QNVDIVVIRENTEGEYSGLEHEV----------------- 153 (344)
Q Consensus 94 ~p~~~~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~---~~vDivIvREnteG~Y~g~e~~~----------------- 153 (344)
+|.+.+++|+++.||++||||+|+||||++||+++|+ +++||+||||||||+|+|.++..
T Consensus 98 tp~~~~~~s~~l~LR~~ldLyaNvRPvk~~pgl~~plk~~~~iD~vIvREnteG~Y~g~~~~~~~~~~~~~~~~~~~~~~ 177 (409)
T PRK07006 98 TPVGGGIRSLNVALRQELDLYVCLRPVRYFKGVPSPVKRPEDTDMVIFRENSEDIYAGIEWKAGSAEAKKVIKFLQEEMG 177 (409)
T ss_pred CCCCcCccChHHHHHHHcCCEEEEEEEecCCCCCCCCCCCCCCCEEEEEeccCCeecccccccCCcccceeeeccccccC
Confidence 9976667889999999999999999999999999987 68999999999999999997421
Q ss_pred ------eCCEEEEEEEeeHHHHHHHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHh-hC-----------
Q 019198 154 ------VPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVAT-KY----------- 215 (344)
Q Consensus 154 ------~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~-ey----------- 215 (344)
..+.|+++++|||+++|||+|+||+||++|++||||++||+||||+|||||++|+.|+++ +|
T Consensus 178 ~~~~~~~~~~a~~~~v~Tr~~~eRi~r~AFe~A~~r~rkkVt~v~KaNVlk~tdglf~~~~~eva~~ey~~~~~~~~~~~ 257 (409)
T PRK07006 178 VKKIRFPETSGIGIKPVSEEGTERLVRAAIEYAIDNDRKSVTLVHKGNIMKFTEGAFKDWGYQLAEEEFGDELIDGGPWD 257 (409)
T ss_pred cccccccccceEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCCccccchHHHHHHHHHHHHHHhhhhhhcccccc
Confidence 123578999999999999999999999999888999999999999999999998889997 78
Q ss_pred --------CCceeeeeeHhHHHHHHHhCCCCccEEecCCcchhhhhhhhhhhcCCCccccCcccCC------------Cc
Q 019198 216 --------PSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGNVG------------NE 275 (344)
Q Consensus 216 --------p~I~~~~~~vD~~~~~Lv~~P~~fdVIvt~NlfGDIlSDlaa~l~GglGl~pSa~nig------------AP 275 (344)
|+|+++++|||++|||||++|++||||||+|||||||||++|+++||+||+||+ |+| ||
T Consensus 258 ~~~~~~~~p~v~~~~~~vDa~~~~lv~~P~~fDVIvt~NlfGDILSDlaa~l~GglGlapSa-nig~~~a~FEpvHGSAP 336 (409)
T PRK07006 258 KIKNPETGKEIIVKDSIADAFLQQILLRPAEYDVIATMNLNGDYISDALAAQVGGIGIAPGA-NINDGHAIFEATHGTAP 336 (409)
T ss_pred ccccccCCCCceeehHHHHHHHHHHhhCcccCcEEEEcCcccchhhHHHHHhcCchhhcccc-eeCCCceEEECCCCcch
Confidence 899999999999999999999999999999999999999999999999999999 998 99
Q ss_pred CccCcCCCChhHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHcCcccCCCC-----CCC-CcHHHHHHHHHHhc
Q 019198 276 KVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEEKYRTKDL-----GGG-CTTQQIVDAVIANL 343 (344)
Q Consensus 276 diaGk~iANP~a~Ils~ammL~~lg~~~~a~~i~~Av~~~l~~g~~~T~Dl-----gG~-~sT~e~~~aV~~~l 343 (344)
||||||+|||+|+|||++|||+|||+.++|++|++||.+++++| .+|+|| ||+ ++|+||+|+|+++|
T Consensus 337 diAGk~iANP~a~IlS~amML~~lG~~~~A~~Ie~Av~~~l~~G-~~T~Dl~~~~~gg~~~~T~e~~daI~~~l 409 (409)
T PRK07006 337 KYAGLDKVNPGSVILSAEMMLRHMGWTEAADLIIKSMEKTIASK-TVTYDFARLMEGATEVKCSEFGDALIKNM 409 (409)
T ss_pred hhCCCCCcChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC-CccccccccCCCCcccCHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999 589999 445 79999999999876
No 19
>TIGR00183 prok_nadp_idh isocitrate dehydrogenase, NADP-dependent, prokaryotic type. Prokaryotic NADP-dependent isocitrate dehydrogenases resemble their NAD-dependent counterparts and 3-isopropylmalate dehydrogenase (an NAD-dependent enzyme) more closely than they resemble eukaryotic NADP-dependent isocitrate dehydrogenases.
Probab=100.00 E-value=1.1e-101 Score=771.13 Aligned_cols=310 Identities=37% Similarity=0.593 Sum_probs=291.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHcC-------CCeeEEEEEeeCC-----C--CCCcHHHHHHHHhcCeEEEccccCCCC
Q 019198 32 VTLIPGDGIGPLVTNAVEQVMEAMH-------APIYFEKYEVHGD-----M--KRVPQQVLDSIRKNKVCLKGGLKTPVG 97 (344)
Q Consensus 32 I~vi~GDGIGpEV~~~~~~vl~~~~-------~~i~~~~~~~g~~-----g--~~lp~~~~~~~~~~da~l~G~~~~p~~ 97 (344)
|+||||||||||||+++++||+++. ++++|+++++|++ | +++|++++++|+++|++||||+++|.+
T Consensus 29 I~vipGDGIGpEv~~~a~~vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~~~lp~~tl~~~~~~da~l~Ga~~tp~~ 108 (416)
T TIGR00183 29 IPYIEGDGIGVDVTPAAIKVLDAAVEKAYKGEKKIVWFEVYAGEKAYQLYGQDQWLPADTLDAIKEYRVAIKGPLTTPVG 108 (416)
T ss_pred EEEeCCCcccHHHHHHHHHHHHHHHHhccCCCCceEEEEEecCHHHHHHhCCCCCCCHHHHHHHHHCCEEEECcccCCCC
Confidence 9999999999999999999999752 4899999998886 8 999999999999999999999999976
Q ss_pred CCCCchhHHHHhhcCcEEEEEEeecCCCCCCCc---ccccEEEEecCCceeeeccccee---------------------
Q 019198 98 GGVSSLNVQLRKELDLYAALVNCFNLPGLPTRH---QNVDIVVIRENTEGEYSGLEHEV--------------------- 153 (344)
Q Consensus 98 ~~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~---~~vDivIvREnteG~Y~g~e~~~--------------------- 153 (344)
.+++|+++.||++||||+|+||||++||+++|+ +++|++||||||||+|+|.|+..
T Consensus 109 ~~~~s~~l~LR~~ldLyaNvRP~k~~pgl~s~~~~~~~vDivIvREnteG~Y~g~~~~~~~~~~~~~~~~~~~~~g~~~~ 188 (416)
T TIGR00183 109 GGIRSLNVALRQELDLYVCLRPVRYYKGVPSPVKHPEKVDMVIFRENTEDIYAGIEWAEGSEEAKKLIRFLQNELGVKKI 188 (416)
T ss_pred ccccCcHHHHHHHcCCEEEEeEeecCCCCCCcCCCCCCCCEEEEEeCCCCcccccccccCcccceeeecccccccCcccc
Confidence 667899999999999999999999999999987 68999999999999999987320
Q ss_pred --eCCEEEEEEEeeHHHHHHHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHh-hC---------------
Q 019198 154 --VPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVAT-KY--------------- 215 (344)
Q Consensus 154 --~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~-ey--------------- 215 (344)
..++++++++|||++++||+|+||++|++|++++||++||+||||.|||+|+++|.||++ +|
T Consensus 189 ~~~~~~a~~~~~~tr~~~~Riar~AFe~A~~r~rk~Vt~v~KaNvlk~tdglf~e~~~eva~~ey~~~~~~~~lw~~~~~ 268 (416)
T TIGR00183 189 RFPEDSGIGIKPISEEGTKRLVRAAIEYAIENDRKSVTLVHKGNIMKFTEGAFRDWGYELAKKEFGAECITWGLWDKYKN 268 (416)
T ss_pred ccccccEEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEECCCccccchhhHHHHHHHHHHHHHhHhhhhccccccccC
Confidence 134678999999999999999999999999778999999999999999999999999998 68
Q ss_pred ----CCceeeeeeHhHHHHHHHhCCCCccEEecCCcchhhhhhhhhhhcCCCccccCcccCC------------CcCccC
Q 019198 216 ----PSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGNVG------------NEKVVE 279 (344)
Q Consensus 216 ----p~I~~~~~~vD~~~~~Lv~~P~~fdVIvt~NlfGDIlSDlaa~l~GglGl~pSa~nig------------APdiaG 279 (344)
|+|+++|++||+++||||++|++||||||+|||||||||++|+++||+||+||+ |+| ||||||
T Consensus 269 p~~~p~I~~~~~~vDa~~~~lv~~P~~fDVivt~NlfGDILSDlaa~l~GslGlapSa-nig~~~alFEp~HGSAPdiAG 347 (416)
T TIGR00183 269 PNPGKEIVIKDRIADAFLQQILTRPDEYDVIATMNLNGDYISDALAAQVGGIGIAPGA-NIGDEIGIFEATHGTAPKYAG 347 (416)
T ss_pred cccCCceeEeehhHHHHHHHHhhCcccCcEEEEcCcccchhhHHHHHhcCchhhccee-eeCCCceEEECCCCCchhhcC
Confidence 499999999999999999999999999999999999999999999999999999 998 999999
Q ss_pred cCCCChhHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHcCcccCCCC----CC-C-CcHHHHHHHHHHhc
Q 019198 280 QKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEEKYRTKDL----GG-G-CTTQQIVDAVIANL 343 (344)
Q Consensus 280 k~iANP~a~Ils~ammL~~lg~~~~a~~i~~Av~~~l~~g~~~T~Dl----gG-~-~sT~e~~~aV~~~l 343 (344)
||+|||+|+|||++|||+|||++++|++|++||.+++++| .+|+|| || . +||+||+|+|+++|
T Consensus 348 k~iANP~a~IlS~amML~~lg~~~~A~~Ie~AV~~~l~~G-~~T~Dl~~~~gg~~~~~T~e~~daI~~~l 416 (416)
T TIGR00183 348 QDKVNPGSIILSGEMMLEHMGWKEAADLIKKAMEKAIASK-IVTYDFARLMDGAKEVKCSEFAEAIIENM 416 (416)
T ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcC-CcccccccccCCCcccCHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999 589999 55 3 79999999999876
No 20
>PRK07362 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=1.7e-101 Score=766.69 Aligned_cols=310 Identities=35% Similarity=0.559 Sum_probs=289.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHc---C----CCeeEEEEEeeCC-----CC--CCcHHHHHHHHhcCeEEEccccCCCC
Q 019198 32 VTLIPGDGIGPLVTNAVEQVMEAM---H----APIYFEKYEVHGD-----MK--RVPQQVLDSIRKNKVCLKGGLKTPVG 97 (344)
Q Consensus 32 I~vi~GDGIGpEV~~~~~~vl~~~---~----~~i~~~~~~~g~~-----g~--~lp~~~~~~~~~~da~l~G~~~~p~~ 97 (344)
|++|||||||||||+++++||+++ + ++|+|.++++|.+ |+ .+|++++++|+++|++||||+++|.+
T Consensus 31 I~vIpGDGIGpEI~~aa~kVL~a~~~~~~~~~~~i~~~~~~~G~~a~~~~G~~~~lP~etle~i~~~da~L~Gpi~tP~~ 110 (474)
T PRK07362 31 IPFIRGDGTGVDIWPATQKVLDAAVAKAYGGERKINWFKVYAGDEACDLYGTYQYLPEDTLEAIREYGVAIKGPLTTPIG 110 (474)
T ss_pred EEEeCCCcccHHHHHHHHHHHHHHHHhccCCCCCeEEEEEccCHHHHHHhCCCCCCCHHHHHHHHHCCEEEECcccCCCC
Confidence 999999999999999999999965 2 4899999998886 75 79999999999999999999999977
Q ss_pred CCCCchhHHHHhhcCcEEEEEEeecCCCCCCCc---ccccEEEEecCCceeeeccccee---------------------
Q 019198 98 GGVSSLNVQLRKELDLYAALVNCFNLPGLPTRH---QNVDIVVIRENTEGEYSGLEHEV--------------------- 153 (344)
Q Consensus 98 ~~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~---~~vDivIvREnteG~Y~g~e~~~--------------------- 153 (344)
.+++|.++.|||+||||+|+||||++||+++|+ .++|+|||||||||+|+|.+++.
T Consensus 111 ~g~~s~~l~LRk~ldLyaNvRPvr~~pgl~sp~k~~~~iD~vIvRENTEGlY~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (474)
T PRK07362 111 GGIRSLNVALRQIFDLYSCVRPCRYYAGTPSPHKNPEKLDVIVYRENTEDIYMGIEWEAGDEIGDKLIKHLNEEVIPASP 190 (474)
T ss_pred cCccchHHHHHHHcCCceeeeEeeccCCCCCcccCCCCCCEEEEEECCCceecccccccccccchhcccccccccccccc
Confidence 678899999999999999999999999999998 58999999999999999997531
Q ss_pred -------eCCEEEEEEEeeHHHHHHHHHHHHHHHHhc--CCCceEEEeccchhhhchHHHHHHHHHHHh-h---------
Q 019198 154 -------VPGVVESLKVITKFCSERIAKYAFEYAYLN--YRKKVTAVHKANIMKLADGLFLESCREVAT-K--------- 214 (344)
Q Consensus 154 -------~~~va~~~~~~Tr~~~eRiar~AFe~A~~r--~~~~Vt~v~KaNvlk~tdglf~~~~~eva~-e--------- 214 (344)
..++++++++|||++++||+|+||+||++| +|+|||+|||+||||+|+|+|++|+.|+|+ +
T Consensus 191 ~~~~~~~~~~~a~~~k~iTr~g~eRI~r~AFe~A~~r~~~rkkVT~VhKaNVlk~t~glf~~~~~evA~~~~~~~~v~~~ 270 (474)
T PRK07362 191 ELGKRQIPLGSGIGIKPVSKTGSQRHIRRAIEHALRLPGDKRHVTLVHKGNIMKYTEGAFRDWGYELATTEFRDECVTER 270 (474)
T ss_pred cccccccccceeeeeeeccHHHHHHHHHHHHHHHHhcCCCCCeEEEEECCcccccchhHHHHHHHHHHHHhhhhhhhhhh
Confidence 123678999999999999999999999998 478899999999999999999998889986 4
Q ss_pred ----------CC------------------------------------------------CceeeeeeHhHHHHHHHhCC
Q 019198 215 ----------YP------------------------------------------------SIKYNEIIVDNCCMQLVSKP 236 (344)
Q Consensus 215 ----------yp------------------------------------------------~I~~~~~~vD~~~~~Lv~~P 236 (344)
|| +|++++++||+++||||++|
T Consensus 271 ~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vDa~a~~lv~~P 350 (474)
T PRK07362 271 ESWILSNKEKNPNISIEDNARMIEPGYDSLTPEKKAAICAEVKEVLDSIWSSHGNGKWKEKVLVDDRIADSIFQQIQTRP 350 (474)
T ss_pred hhhhhcccccCccccccccccccccccccccccccccccccccccccchhhccccccCCCcceeehHHHHHHHHHHHhCh
Confidence 44 47789999999999999999
Q ss_pred CCccEEecCCcchhhhhhhhhhhcCCCccccCcccCC------------CcCccCcCCCChhHHHHHHHHHhhhcCchHH
Q 019198 237 EQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGNVG------------NEKVVEQKKANPVALLLSSAMMLRHLQFPSF 304 (344)
Q Consensus 237 ~~fdVIvt~NlfGDIlSDlaa~l~GglGl~pSa~nig------------APdiaGk~iANP~a~Ils~ammL~~lg~~~~ 304 (344)
++||||||+|||||||||++|+++|||||+||+ |+| ||||||||+|||+|+|||++|||+|||+.++
T Consensus 351 ~~FDVIVt~NLfGDILSDlaA~lvGglGlaPSA-NiG~~~a~FEpvHGSAPdIAGk~iANP~A~ILS~aMML~~LG~~~~ 429 (474)
T PRK07362 351 QEYSILATLNLNGDYISDAAAAIVGGLGMAPGA-NIGDNAAIFEATHGTAPKHAGLDRINPGSVILSGVMMLEYLGWQEA 429 (474)
T ss_pred hhCCEEEEccccchhhhHHHHHhcCCcccccee-eeCCCceeeecCCCCchhhcCCCCcCcHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999999999999999999 998 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCcccCCCCC-------CCCcHHHHHHHHHHhc
Q 019198 305 ADRLETAVKRVISEEKYRTKDLG-------GGCTTQQIVDAVIANL 343 (344)
Q Consensus 305 a~~i~~Av~~~l~~g~~~T~Dlg-------G~~sT~e~~~aV~~~l 343 (344)
|++|++||.+++++|. +|+||| |.+||+||+++|++++
T Consensus 430 A~~I~~AV~~vl~~g~-~T~Dlg~~~~~~~~~~sT~E~~~aIi~~~ 474 (474)
T PRK07362 430 ADLITKGLSAAIANKQ-VTYDLARLMEPPVDPLSCSEFAEAIISHF 474 (474)
T ss_pred HHHHHHHHHHHHHcCC-cccCCCCccccCCCCcCHHHHHHHHHhcC
Confidence 9999999999999994 899999 5789999999999864
No 21
>KOG0784 consensus Isocitrate dehydrogenase, gamma subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=7.3e-101 Score=730.83 Aligned_cols=329 Identities=66% Similarity=1.008 Sum_probs=317.3
Q ss_pred hcccccCCCCCCCCceEEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEeeCC---CCCCcHHHHHHHHhcCeEEEcc
Q 019198 15 TRSVTYMPRPGDGSPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD---MKRVPQQVLDSIRKNKVCLKGG 91 (344)
Q Consensus 15 ~~~~~~~~~~~~~~~~~I~vi~GDGIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~---g~~lp~~~~~~~~~~da~l~G~ 91 (344)
.++.+++|+++||++++|++|||||||||++.++.+|++++++|++|+++++++. ++..++|.++++++++++|||-
T Consensus 28 ~~~~~~~p~~kygg~~tVTlipGdGIGpe~~~~V~~v~~a~~~PV~fE~i~v~~~~~~~~~~~~e~v~Si~rNkValkG~ 107 (375)
T KOG0784|consen 28 AAPVTVLPPAKYGGRHTVTLIPGDGIGPELTNAVREVFSAAHAPVEFEEIEVSGSNKESSEDLDEAVESIKRNKVALKGN 107 (375)
T ss_pred ccccccCCCcccCCcceEEEeCCCCcCHHHHHHHHHHHHhcCCCeeEEEEEccCCccccchhHHHHHHHHHhcceeEeec
Confidence 3566699999999999999999999999999999999999999999999999863 6668999999999999999999
Q ss_pred ccCCC-CCCCCchhHHHHhhcCcEEEEEEeecCCCCCCCcccccEEEEecCCceeeecccceeeCCEEEEEEEeeHHHHH
Q 019198 92 LKTPV-GGGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSE 170 (344)
Q Consensus 92 ~~~p~-~~~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~~~vDivIvREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~e 170 (344)
+.+|. ..+..|.|+.||++||||||+-.|+++||++++|+++|++||||||||+|+|.||+..+||.++.+++|++.+|
T Consensus 108 i~t~~~~g~~~s~n~~LR~~LDLyanvv~~~slpG~~tRh~~vDiviIRENTEGEYs~LEHE~VpGVVEsLKVvT~~kse 187 (375)
T KOG0784|consen 108 IETPDLPGGAKSLNVKLRKELDLYANVVHCKSLPGVKTRHENVDIVIIRENTEGEYSGLEHESVPGVVESLKVVTRFKSE 187 (375)
T ss_pred ccCCCCccchhhhHHHHHHhhhhhhheeeeeccCCcccccCCccEEEEecCCcccccccccccCcchhheeeeehhhhhH
Confidence 99994 34678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeeeHhHHHHHHHhCCCCccEEecCCcchh
Q 019198 171 RIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGN 250 (344)
Q Consensus 171 Riar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~vD~~~~~Lv~~P~~fdVIvt~NlfGD 250 (344)
||+||||+||.+.||||||+|||+|+||.+||||+++|+||++.||+|+++.|+||++|||||++|+||||+|+|||||+
T Consensus 188 RIaryAF~yA~k~gRKkVTaVHKAnimKL~DGlFle~~~eva~~Yp~I~~e~miVDN~~MQlvs~P~qFDvmv~pnlYgn 267 (375)
T KOG0784|consen 188 RIARYAFEYAKKNGRKKVTAVHKANIMKLGDGLFLESCQEVAKKYPDITFEEMIVDNACMQLVSRPQQFDVMVMPNLYGN 267 (375)
T ss_pred HHHHHHHHHHHHhCCceEEEEeccCceecchhhHHHHHHHHHhcCCCccHHHhhHHHhHHHhhcCchheeeEechHHHHH
Confidence 99999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred hhhhhhhhhcCCCccccCcccCC-------------CcCccCcCCCChhHHHHHHHHHhhhcCchHHHHHHHHHHHHHHH
Q 019198 251 LVSNTAAGIAGGTGVMPGAGNVG-------------NEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVIS 317 (344)
Q Consensus 251 IlSDlaa~l~GglGl~pSa~nig-------------APdiaGk~iANP~a~Ils~ammL~~lg~~~~a~~i~~Av~~~l~ 317 (344)
|||.+|++|+||.|+.|++ |+| .-+++||++|||+|||+|++|||+|||++.+|++|++||.+++.
T Consensus 268 iisNiaaGlvGG~Glv~G~-n~G~~yAVFE~g~r~~~~~~~g~~~aNPtA~llss~~MLrHL~l~~~Ad~i~~Av~~vi~ 346 (375)
T KOG0784|consen 268 IISNIAAGLVGGAGLVSGA-NYGDDYAVFEPGARHTGTSIAGKNIANPTAMLLSSVDMLRHLGLPSHADRISTAVKRVID 346 (375)
T ss_pred HHHHHHHHhcCCCCccccc-ccccceEEecccccccchhhhcccccCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Confidence 9999999999999999999 999 33599999999999999999999999999999999999999999
Q ss_pred cCcccCCCCCCCCcHHHHHHHHHHhcC
Q 019198 318 EEKYRTKDLGGGCTTQQIVDAVIANLD 344 (344)
Q Consensus 318 ~g~~~T~DlgG~~sT~e~~~aV~~~l~ 344 (344)
+|+++|+||||..||++|+++||++|+
T Consensus 347 egk~rT~DlGG~~Tt~dvi~avI~~l~ 373 (375)
T KOG0784|consen 347 EGKIRTKDLGGQSTTQDVIDAVIANLR 373 (375)
T ss_pred cCcccccccCCCcchHHHHHHHHHHhc
Confidence 999999999999999999999999874
No 22
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate. IDH is either dependent on NAD+ (1.1.1.41 from EC) or on NADP+ (1.1.1.42 from EC). In eukaryotes there are at least three isozymes of IDH: two are located in the mitochondrial matrix (one NAD+-dependent, the other NADP+-dependent), while the third one (also NADP+-dependent) is cytoplasmic. In Escherichia coli the activity of a NADP+-dependent form of the enzyme is controlled by the phosphorylation of a serine residue; the phosphorylated form of IDH is completely inactivated. 3-isopropylmalate dehydrogenase (1.1.1.85 from EC) (IMDH) [, ] catalyses the third step in the biosynthesis of leucine in bacteria and fungi, the oxidative decarboxylation of 3-isopropylmalate into 2-oxo-4-methylvalerate. Tartrate dehydrogenase (1.1.1.93 from EC) [] catalyses the reduction of tartrate to oxaloglycolate. These enzymes are evolutionary related. To this family also belongs the enzyme tartrate dehydrogenase, which shows strong homology to prokaryotic isopropylmalate dehydrogenases and, to a lesser extent, isocitrate dehydrogenase []. This entry represents a structural domain found in all types of isocitrate dehydrogenase, and in isopropylmalate dehydrogenase and tartrate dehydrogenase. The crystal structure of Escherichia coli isopropylmalate dehydrogenase has been described []. ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1WAL_A 1CNZ_B 2D4V_C 1CM7_A 4AOY_D 3FMX_X 3FLK_C 1A05_A 1X0L_B 4F7I_D ....
Probab=100.00 E-value=3.9e-100 Score=748.03 Aligned_cols=306 Identities=48% Similarity=0.795 Sum_probs=288.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHcC----CCeeEEEEEeeCC-----CCCCcHHHHHHHHhcCeEEEccccCCCCCCCC
Q 019198 31 AVTLIPGDGIGPLVTNAVEQVMEAMH----APIYFEKYEVHGD-----MKRVPQQVLDSIRKNKVCLKGGLKTPVGGGVS 101 (344)
Q Consensus 31 ~I~vi~GDGIGpEV~~~~~~vl~~~~----~~i~~~~~~~g~~-----g~~lp~~~~~~~~~~da~l~G~~~~p~~~~~~ 101 (344)
||+||||||||||||+++++||+++. ++++|+++++|.+ |+++|++++++|+++|++||||+++|..++.+
T Consensus 1 kI~vipGDGIGpEv~~~~~~Vl~a~~~~~~~~~e~~~~~~G~~~~~~~g~~lp~et~~~i~~~daiL~Gai~~p~~~~~~ 80 (348)
T PF00180_consen 1 KIAVIPGDGIGPEVMPAALRVLEAAAEKYGLDFEFEEFDIGGEAYDKTGEPLPDETLEAIKRADAILKGAIGTPKPPGIR 80 (348)
T ss_dssp EEEEEEESTTHHHHHHHHHHHHHHHHHHHTEEEEEEEEETSHHHHHHHSSSSHHHHHHHHHHCSEEEEEE--CGGSSSHS
T ss_pred CcceeccCcchHHHHHHHHHHHHHHHhhcccccccccccchhhhhhhccccccHHHHHHHhhcCcEEEcccccccccccc
Confidence 79999999999999999999999984 8899999999987 99999999999999999999999999855544
Q ss_pred ch--hHHHHhhcCcEEEEEEeecC--CCCCCCcc-----cccEEEEecCCceeeecccceeeCC-----EEEEEEEeeHH
Q 019198 102 SL--NVQLRKELDLYAALVNCFNL--PGLPTRHQ-----NVDIVVIRENTEGEYSGLEHEVVPG-----VVESLKVITKF 167 (344)
Q Consensus 102 s~--~~~LR~~ldlyanvRP~~~~--pg~~~~~~-----~vDivIvREnteG~Y~g~e~~~~~~-----va~~~~~~Tr~ 167 (344)
+. ++.||++||||+|+||||++ ++..+|++ ++|++||||||||+|+|.+++..++ +++++++|||+
T Consensus 81 ~~~~l~~lR~~ldl~anvRp~~~~~~~~~~~~~~~~~~~~iDivivREnteG~Y~g~~~~~~~~~~~~~~a~~~~~~t~~ 160 (348)
T PF00180_consen 81 SENGLLKLRKELDLYANVRPVRSFPGPGVPSPLKDEIPEGIDIVIVRENTEGLYSGIEHEIGDGGTPDEVAIDTKVITRE 160 (348)
T ss_dssp HHHHHHHHHHHTTHHEEEEEEEEECETTGGSSBSHHHHTTSEEEEEEESSSGGGGEEEEEECSEEEGSSEEEEEEEEEHH
T ss_pred cHHHHHHHHHhcccceeeEEEEEeccccccccccccccCcceEEEecccccCcccCCCCceeeccCCCceEEEeeccccc
Confidence 43 48999999999999999999 56677776 5999999999999999999987654 89999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHh-hCCCceeeeeeHhHHHHHHHhCCCCccEEecCC
Q 019198 168 CSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVAT-KYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPN 246 (344)
Q Consensus 168 ~~eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~-eyp~I~~~~~~vD~~~~~Lv~~P~~fdVIvt~N 246 (344)
++|||+|+||++|++|+||+||++||+|||+.++ +|+++|+|+++ +||+|++++++||+++|+||++|++||||||+|
T Consensus 161 ~~eRi~r~AF~~A~~r~~k~Vt~v~KaNvl~~~~-lf~~~~~eva~~~yp~I~~~~~~vD~~~~~Lv~~P~~fdViv~~N 239 (348)
T PF00180_consen 161 GIERIARFAFEYARKRGRKKVTVVHKANVLKSTD-LFREVFQEVAKQEYPDIEVEHMLVDAAAMQLVKNPEQFDVIVTPN 239 (348)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEEESTTTSTTHH-HHHHHHHHHHHHTHTTSEEEEEEHHHHHHHHHHSGGGESEEEEEH
T ss_pred hhhHHHHHHHHHHHHhCCceEEEEeccchhHHHH-HHHHHHHHHHHhhcceeEeeeeechhhhheeecCCcceeEEeecc
Confidence 9999999999999999999999999999999998 99999999999 999999999999999999999999999999999
Q ss_pred cchhhhhhhhhhhcCCCccccCcccCC-------------CcCccCcCCCChhHHHHHHHHHhhh-cCchHHHHHHHHHH
Q 019198 247 LYGNLVSNTAAGIAGGTGVMPGAGNVG-------------NEKVVEQKKANPVALLLSSAMMLRH-LQFPSFADRLETAV 312 (344)
Q Consensus 247 lfGDIlSDlaa~l~GglGl~pSa~nig-------------APdiaGk~iANP~a~Ils~ammL~~-lg~~~~a~~i~~Av 312 (344)
||||||||++++++||+||+||+ |+| ||||||||+|||+|||||++|||+| ||++++|++|++||
T Consensus 240 l~GDIlSDl~a~l~G~lGl~psa-nig~~~~a~fEp~HGSApdiaGk~~aNP~a~Ils~a~mL~~~lg~~~~a~~i~~Av 318 (348)
T PF00180_consen 240 LFGDILSDLAAGLVGGLGLAPSA-NIGPDGHAMFEPVHGSAPDIAGKGIANPIAMILSAAMMLEHSLGLPEAADAIEKAV 318 (348)
T ss_dssp HHHHHHHHHHHHHHTSGGGEEEE-EEETSSEEEEEESSTTTGGGTTSSHS-THHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred hhHHHHHHHhhhcCCChhhhhhh-ccCccccccccccccccccccCCcccCcHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 99999999999999999999999 998 9999999999999999999999999 99999999999999
Q ss_pred HHHHHcCcccCCCCCCCC----cHHHHHHHH
Q 019198 313 KRVISEEKYRTKDLGGGC----TTQQIVDAV 339 (344)
Q Consensus 313 ~~~l~~g~~~T~DlgG~~----sT~e~~~aV 339 (344)
.+++++| ++|+||||++ +|+||+|+|
T Consensus 319 ~~~l~~g-~~T~Dlgg~~~~~~~T~e~~daV 348 (348)
T PF00180_consen 319 EKVLEEG-IRTPDLGGSATTAVSTEEFGDAV 348 (348)
T ss_dssp HHHHHTT-EEBGGGHTTTCEEBHHHHHHHHH
T ss_pred HHHHHcC-CCCccccCCCCCCCCHHHHHhhC
Confidence 9999998 5999999998 999999997
No 23
>PRK08299 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=9.4e-93 Score=700.30 Aligned_cols=306 Identities=23% Similarity=0.258 Sum_probs=282.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEeeCC-----CCCCcHHHHHHHHhcCeEEEccccCCCC------
Q 019198 29 PRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD-----MKRVPQQVLDSIRKNKVCLKGGLKTPVG------ 97 (344)
Q Consensus 29 ~~~I~vi~GDGIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~-----g~~lp~~~~~~~~~~da~l~G~~~~p~~------ 97 (344)
+.+|++||||||||||+++++.+|.+..++++|+++++|.+ |+.+|+++++++|++|++||||+++|..
T Consensus 7 ~~~~~~~~gd~i~~~~~~~~~~~~~~~~~~i~~~~~d~G~~~~~~~G~~lp~~tl~~ik~~da~LkGav~tp~~~~~~~~ 86 (402)
T PRK08299 7 KNPVVELDGDEMTRIIWKFIKDKLILPYLDIDLEYYDLGIENRDATDDQVTIDAANAIKKYGVGVKCATITPDEARVKEF 86 (402)
T ss_pred CCceEEecCCCchHHHHHHHHHHHhccCCCeEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECCccCCCccccccc
Confidence 46899999999999999999999999999999999999987 9999999999999999999999999952
Q ss_pred ---CCCCchhHHHHhhcCcEEEEEEe--ec----CCCCCCCcccccEEEEecCCceeeeccccee------------eCC
Q 019198 98 ---GGVSSLNVQLRKELDLYAALVNC--FN----LPGLPTRHQNVDIVVIRENTEGEYSGLEHEV------------VPG 156 (344)
Q Consensus 98 ---~~~~s~~~~LR~~ldlyanvRP~--~~----~pg~~~~~~~vDivIvREnteG~Y~g~e~~~------------~~~ 156 (344)
+.++|+|+.|||+||||+|+||+ ++ +||+++ +++||||||||+|+|.++.. .++
T Consensus 87 ~~~~~~~s~n~~LRk~ldLyaNiRPv~~k~i~~~~pg~~~-----~ivivREnTEg~Y~gi~~~~~r~~~~~~~~~~~~g 161 (402)
T PRK08299 87 NLKKMWKSPNGTIRNILGGTVFREPIICKNVPRLVPGWTK-----PIVIGRHAYGDQYRATDFKVPGKGKLTLVFTGEDG 161 (402)
T ss_pred CccccccCchHHHHHHcCCeEEEEeeecccccccCCCCCC-----CEEEEecccCCcccceeEEeccCccceeeeecCCC
Confidence 13689999999999999999998 66 777754 59999999999999998764 222
Q ss_pred ------------EEEEEEE-eeHHHHHHHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHh-hCC------
Q 019198 157 ------------VVESLKV-ITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVAT-KYP------ 216 (344)
Q Consensus 157 ------------va~~~~~-~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~-eyp------ 216 (344)
.++++++ +||+++|||+|+||+||++| ++|||+|||+||||.|||||+++|+||++ +||
T Consensus 162 ~~~e~~~~~~~~~~~~~~~~~Tr~~~eRIa~~AF~~A~~r-~~kVt~v~KaNVlk~t~glf~~~~~evA~~~yp~~~~~~ 240 (402)
T PRK08299 162 EPIEHEVHDFPGAGVAMGMYNLDESIRDFARASFNYGLDR-KYPVYLSTKNTILKAYDGRFKDIFQEVYEAEFKEKFEAA 240 (402)
T ss_pred ccccceecccccCceeEEEeecHHHHHHHHHHHHHHHHHc-CCCEEEECCCCcchhhhHHHHHHHHHHHHHhCccccccC
Confidence 1334555 99999999999999999999 46799999999999999999999999995 899
Q ss_pred CceeeeeeHhHHHHHHHhCCCCccEEecCCcchhhhhhhhhhhcCCCccccCcccCC--------------CcC-----c
Q 019198 217 SIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGNVG--------------NEK-----V 277 (344)
Q Consensus 217 ~I~~~~~~vD~~~~~Lv~~P~~fdVIvt~NlfGDIlSDlaa~l~GglGl~pSa~nig--------------APd-----i 277 (344)
+|++++++||++|||||++|++| ||||+|||||||||++|+++||+||+||+ |+| ||| |
T Consensus 241 ~i~~~~~~vDa~~~~lv~~P~~f-Vivt~NlfGDIlSDlaa~l~GglG~apSa-nig~~~~~a~FEp~HGSAPD~~~~~I 318 (402)
T PRK08299 241 GITYEHRLIDDMVASALKWEGGY-VWACKNYDGDVQSDTVAQGFGSLGLMTSV-LMTPDGKTVEAEAAHGTVTRHYRQHQ 318 (402)
T ss_pred cEEEEEeeHHHHHHHHHhCcCCc-EEEEeccccchhhhHHHhhcCCcccccce-eeCCCCCcEEEecCCCCCcccccccc
Confidence 59999999999999999999999 99999999999999999999999999999 998 999 9
Q ss_pred cCcCC-CChhHHHHHHHHHhhhcCc-------hHHHHHHHHHHHHHHHcCcccCCCCC-------CCCcHHHHHHHHHHh
Q 019198 278 VEQKK-ANPVALLLSSAMMLRHLQF-------PSFADRLETAVKRVISEEKYRTKDLG-------GGCTTQQIVDAVIAN 342 (344)
Q Consensus 278 aGk~i-ANP~a~Ils~ammL~~lg~-------~~~a~~i~~Av~~~l~~g~~~T~Dlg-------G~~sT~e~~~aV~~~ 342 (344)
||||+ |||+|||||++|||+|||+ .++|++|++||.+++++|. +|+||| |.+||+||+|+|+++
T Consensus 319 aGk~~~ANP~A~IlS~amML~~LG~~~~~~~l~~~a~~I~~Av~~~l~~g~-~T~Dlg~~~g~~~g~~tT~e~~daIi~~ 397 (402)
T PRK08299 319 KGEETSTNPIASIFAWTRGLAHRGKLDGNPELVKFADTLEKVCIETVESGF-MTKDLALLVGPDQKWLTTEEFLDAIDEN 397 (402)
T ss_pred cCCCCccCHHHHHHHHHHHHHHhCCccccchHHHHHHHHHHHHHHHHHcCC-cCccchhccCCCCCCcCHHHHHHHHHHH
Confidence 99997 9999999999999999999 8899999999999999994 899995 458999999999998
Q ss_pred c
Q 019198 343 L 343 (344)
Q Consensus 343 l 343 (344)
|
T Consensus 398 l 398 (402)
T PRK08299 398 L 398 (402)
T ss_pred H
Confidence 7
No 24
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=7.5e-91 Score=688.23 Aligned_cols=309 Identities=22% Similarity=0.273 Sum_probs=285.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEeeCC-----CCCCcHHHHHHHHhcCeEEEccccCCCCC-----
Q 019198 29 PRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD-----MKRVPQQVLDSIRKNKVCLKGGLKTPVGG----- 98 (344)
Q Consensus 29 ~~~I~vi~GDGIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~-----g~~lp~~~~~~~~~~da~l~G~~~~p~~~----- 98 (344)
.-++++|+|||||+|++++++++|.+..++++|+++|+|.+ |+.+|++++++||++|++||||+++|.+.
T Consensus 9 ~~p~~~~~Gd~~~~~~~~~~~~~~~~~~~~i~~~~~d~G~~~~~~tg~~lp~e~le~~k~~da~lkGav~tp~~~~~~~~ 88 (410)
T PLN00103 9 ANPIVEMDGDEMTRVIWKSIKDKLIFPFLDLDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEF 88 (410)
T ss_pred cCCeEEecCCcchHHHHHHHHHHHhcCCCCeEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECCccCccccccccc
Confidence 45799999999999999999999999999999999999986 99999999999999999999999999532
Q ss_pred C----CCchhHHHHhhcCcEEEEEE--eecCC----CCCCCc---------------------ccccEEEEecCCceeee
Q 019198 99 G----VSSLNVQLRKELDLYAALVN--CFNLP----GLPTRH---------------------QNVDIVVIRENTEGEYS 147 (344)
Q Consensus 99 ~----~~s~~~~LR~~ldlyanvRP--~~~~p----g~~~~~---------------------~~vDivIvREnteG~Y~ 147 (344)
+ ++|+|++|||+||||+|+|| ||++| |+++|+ .++|+|||||||||+|
T Consensus 89 ~~~~~~~s~n~~lRk~ldlyanvRP~~vk~~~~~~~g~~~~i~~~~~~~~~~~~~~d~v~~~~~~id~vivRENTEg~y- 167 (410)
T PLN00103 89 GLKQMWKSPNGTIRNILNGTVFREPIICKNIPRLVPGWTKPICIGRHAFGDQYRATDAVIKGPGKLKLVFVPEGKDEKT- 167 (410)
T ss_pred CccccccCchHHHHHHcCCeEEecchhccccCccCCCCCCceeecccccccccccceeccCCCCceEEEEEecCCCcee-
Confidence 3 67999999999999999999 99988 888775 5789999999999999
Q ss_pred cccceee---CCEEEEEEEe-eHHHHHHHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHh-----hCC--
Q 019198 148 GLEHEVV---PGVVESLKVI-TKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVAT-----KYP-- 216 (344)
Q Consensus 148 g~e~~~~---~~va~~~~~~-Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~-----eyp-- 216 (344)
|++.. ...+++++++ |+++++||+|+||++|++| +++||++||+||||.+||+|+++|+||++ +||
T Consensus 168 --e~~~~~~~g~~~v~~~~~~T~~~~~Riar~AFe~A~~r-~~~vt~v~KaNVlk~~dglf~~~~~eva~~~~~~eyp~~ 244 (410)
T PLN00103 168 --ELEVYNFTGAGGVALSMYNTDESIRAFAEASMNTAYQK-KWPLYLSTKNTILKKYDGRFKDIFQEVYEAQWKSKFEAA 244 (410)
T ss_pred --EEEeeccCCCcceEEEEEcCHHHHHHHHHHHHHHHHhc-CCcEEEECCCCCchhhHHHHHHHHHHHHHhhhhhhCCCC
Confidence 23221 1245577887 9999999999999999998 45699999999999999999999999986 799
Q ss_pred CceeeeeeHhHHHHHHHhCCCCccEEecCCcchhhhhhhhhhhcCCCccccCcccCC--------------CcC------
Q 019198 217 SIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGNVG--------------NEK------ 276 (344)
Q Consensus 217 ~I~~~~~~vD~~~~~Lv~~P~~fdVIvt~NlfGDIlSDlaa~l~GglGl~pSa~nig--------------APd------ 276 (344)
+|++++++||++|||||++|++| ||||+|||||||||++|+++||+||+||+ |+| |||
T Consensus 245 ~I~~~~~lVDa~a~~lv~~P~~f-Viv~~NLfGDIlSDlaA~l~GslGlapSa-nig~~~~~~~FEp~HGSApd~~~~~d 322 (410)
T PLN00103 245 GIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSV-LVCPDGKTIEAEAAHGTVTRHYRVHQ 322 (410)
T ss_pred ceEEEEeEHHHHHHHHhcCCCCC-EEEEcccchHHHHHHHHHhcCchhhhhcc-ccCCCCCcEEEeCCCCcCcccchhhh
Confidence 89999999999999999999999 99999999999999999999999999999 998 998
Q ss_pred ccCcCCCChhHHHHHHHHHhhhc-------CchHHHHHHHHHHHHHHHcCcccCCCC-----CCC------CcHHHHHHH
Q 019198 277 VVEQKKANPVALLLSSAMMLRHL-------QFPSFADRLETAVKRVISEEKYRTKDL-----GGG------CTTQQIVDA 338 (344)
Q Consensus 277 iaGk~iANP~a~Ils~ammL~~l-------g~~~~a~~i~~Av~~~l~~g~~~T~Dl-----gG~------~sT~e~~~a 338 (344)
|||||+|||+|+|||++|||+|| |+.++|++|++||.+++++|. +|+|| ||+ ++|+||+|+
T Consensus 323 iaGk~iANP~A~IlS~ammL~~l~~~~~~~g~~~~a~~i~~Av~~~l~~G~-~T~Dl~~~~~gg~~~~~~~~~T~e~~da 401 (410)
T PLN00103 323 KGGETSTNSIASIFAWSRGLAHRAKLDGNARLLDFTEKLEAACVGTVESGK-MTKDLALLIHGPKVSRDQYLNTEEFIDA 401 (410)
T ss_pred hcCCCccChHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHcCC-CCcccccccCCCcccCCCCcCHHHHHHH
Confidence 99999999999999999999998 899999999999999999995 89999 454 899999999
Q ss_pred HHHhcC
Q 019198 339 VIANLD 344 (344)
Q Consensus 339 V~~~l~ 344 (344)
|+++|+
T Consensus 402 V~~~l~ 407 (410)
T PLN00103 402 VAEELK 407 (410)
T ss_pred HHHHHH
Confidence 999873
No 25
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type. This model does not discriminate cytosolic, mitochondrial, and chloroplast proteins. However, the model starts very near the amino end of the cytosolic form; the finding of additional amino-terminal sequence may indicate a transit peptide.
Probab=100.00 E-value=4.6e-86 Score=653.26 Aligned_cols=310 Identities=23% Similarity=0.262 Sum_probs=280.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEeeCC-----CCCCcHHHHHHHHhcCeEEEccccCCCCC-----
Q 019198 29 PRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD-----MKRVPQQVLDSIRKNKVCLKGGLKTPVGG----- 98 (344)
Q Consensus 29 ~~~I~vi~GDGIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~-----g~~lp~~~~~~~~~~da~l~G~~~~p~~~----- 98 (344)
..++..+.||.+-.-++...++-|-...++++|+++|+|.+ |+++|+++++++|++|++||||++||.+.
T Consensus 6 ~~p~v~~~g~em~~~~~~~~~~~~~~~~~~i~~~~~d~g~~~~~~tg~~lp~ea~eaik~~dv~LkGa~~TP~~~~~~~~ 85 (409)
T TIGR00127 6 ANPVVEMDGDEMTRIIWELIKDKLILPYVELDLKYYDLGVEYRDATNDQVTVDAAEAIKKYNVGVKCATITPDEARVEEF 85 (409)
T ss_pred cCCeEEecCcHHHHHHHHHHHHhhccCCcCceEEEEeCcHHHHHhhCCcCCHHHHHHHHHcCEEEECcccCCcccccccc
Confidence 45788999994444444433333333488999999999987 89999999999999999999999999642
Q ss_pred ----CCCchhHHHHhhcCcEEEEEE------eecCCCCCCC-----------cccccEEEEecCC-ceeeeccccee---
Q 019198 99 ----GVSSLNVQLRKELDLYAALVN------CFNLPGLPTR-----------HQNVDIVVIRENT-EGEYSGLEHEV--- 153 (344)
Q Consensus 99 ----~~~s~~~~LR~~ldlyanvRP------~~~~pg~~~~-----------~~~vDivIvREnt-eG~Y~g~e~~~--- 153 (344)
+++|+|++||+.||||+|+|| ++++||+.+| ++++|++|+|||| ||+|+|.++..
T Consensus 86 ~l~k~~~S~n~~lR~~ldlyanvRPi~~~~~~~~~pg~~~~i~i~R~~~~~~y~~iD~vivREnt~Eg~Y~g~e~~~~~~ 165 (409)
T TIGR00127 86 KLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWEKPIIIGRHAFGDQYRATDFVVPGPGKLELVYKPKDGTQKVT 165 (409)
T ss_pred ccccccCCccHHHHHHcCCeEEeeeccccccCccCCCCCCCeeeeccccCCCcCceEEEEecCCeeeEEEECCCCCcccc
Confidence 358999999999999999999 8889998866 6889999999999 99999998632
Q ss_pred ---e-----CCEEEEEEEeeHHHHHHHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHH-hhCC------Cc
Q 019198 154 ---V-----PGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVA-TKYP------SI 218 (344)
Q Consensus 154 ---~-----~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva-~eyp------~I 218 (344)
. ++++++. ++||+++|||+|+||+||++| +++||++||+||||.+||+|+++|+||+ ++|| +|
T Consensus 166 ~~~~~~~~~~~v~~~~-~~T~~~~eRIar~AF~~A~~~-~~~Vt~v~KaNVlk~~dglf~~~~~eva~~eYp~~~~~~~I 243 (409)
T TIGR00127 166 LKVYDFEEGGGVAMAM-YNTDESIEGFAHSSFQLALEK-KWPLYLSTKNTILKKYDGRFKDIFQEVYEAQYKSKFEALGI 243 (409)
T ss_pred eeeeeccCCCCeEEEE-EECHHHHHHHHHHHHHHHHHc-CCCEEEEcCcchhhhhhHHHHHHHHHHHHHhCcccccCCCE
Confidence 1 4678766 899999999999999999999 5689999999999999999999999996 7999 89
Q ss_pred eeeeeeHhHHHHHHHhCCCCccEEecCCcchhhhhhhhhhhcCCCccccCcccCC--------------CcCc-----cC
Q 019198 219 KYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGNVG--------------NEKV-----VE 279 (344)
Q Consensus 219 ~~~~~~vD~~~~~Lv~~P~~fdVIvt~NlfGDIlSDlaa~l~GglGl~pSa~nig--------------APdi-----aG 279 (344)
+++|++||++|||||++|++| ||||+|||||||||++|+++|||||+||+ |+| |||| ||
T Consensus 244 ~~~~~lVDa~~m~lv~~P~~f-Viv~~NlfGDIlSDlaA~l~GslGl~pSa-nig~~~~~~~fEp~HGSApdi~~~~iaG 321 (409)
T TIGR00127 244 WYEHRLIDDMVAQALKSEGGF-IWACKNYDGDVQSDIVAQGFGSLGLMTSV-LICPDGKTFEAEAAHGTVTRHYRMYQKG 321 (409)
T ss_pred EEEEeeHHHHHHHHhhCCCCc-EEEecccchHHHHHHHHHhcCchhhhhee-eeCCCCceEEeccccCCCcccchhhhCC
Confidence 999999999999999999999 99999999999999999999999999999 998 9998 99
Q ss_pred c-CCCChhHHHHHHHHHhhhcC-------chHHHHHHHHHHHHHHHcCcccCCCC----CCC-------CcHHHHHHHHH
Q 019198 280 Q-KKANPVALLLSSAMMLRHLQ-------FPSFADRLETAVKRVISEEKYRTKDL----GGG-------CTTQQIVDAVI 340 (344)
Q Consensus 280 k-~iANP~a~Ils~ammL~~lg-------~~~~a~~i~~Av~~~l~~g~~~T~Dl----gG~-------~sT~e~~~aV~ 340 (344)
| ++|||+|+|||++|||+|+| +.++|++|++||.+++++| ++|+|| ||+ ++|+||+|+|+
T Consensus 322 k~~~ANP~A~IlS~ammL~~lg~~~~~~g~~~~A~~Ie~Av~~~i~~g-~~T~Dl~~~~GG~~~~~~~~~~T~e~~daV~ 400 (409)
T TIGR00127 322 QETSTNSIASIFAWSRGLAHRAKLDNNPELSKFANILESACINTVEAG-IMTKDLALILGGSPVERSAYLNTEEFIDAVE 400 (409)
T ss_pred CCCccChHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHhcC-CcccccccccCCCcccCCCCcCHHHHHHHHH
Confidence 6 89999999999999999986 6899999999999999999 589999 888 99999999999
Q ss_pred Hhc
Q 019198 341 ANL 343 (344)
Q Consensus 341 ~~l 343 (344)
++|
T Consensus 401 ~~L 403 (409)
T TIGR00127 401 ERL 403 (409)
T ss_pred HHH
Confidence 987
No 26
>PTZ00435 isocitrate dehydrogenase; Provisional
Probab=100.00 E-value=5.8e-85 Score=646.09 Aligned_cols=311 Identities=23% Similarity=0.258 Sum_probs=278.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEeeCC-----CCCCcHHHHHHHHhcCeEEEccccCCCCC---C
Q 019198 28 SPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD-----MKRVPQQVLDSIRKNKVCLKGGLKTPVGG---G 99 (344)
Q Consensus 28 ~~~~I~vi~GDGIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~-----g~~lp~~~~~~~~~~da~l~G~~~~p~~~---~ 99 (344)
-+-++..+.||.+-.-+++-.++-|-...++++|+++|+|.+ |+.+|+++++++|++|++||||++||.++ +
T Consensus 8 ~~~~~v~~~~~em~~~~~~~~~~~~~~~~~~i~~~~~d~g~~~~~~tg~~lp~ea~eaik~~~v~LkGa~~TP~~~~~~~ 87 (413)
T PTZ00435 8 VKNPVVELDGDEMTRIIWKMIKEKLILPYLDVPIKYYDLSIENRDKTDDKVTVDAAEAIKKHKVGIKCATITPDEARVKE 87 (413)
T ss_pred ccCCeEEecccHHHHHHHHHHHHhhccCCCCceEEEEeCcHHHHHhcCCcCCHHHHHHHHHcCEEEECcccCCccccccc
Confidence 346789999995544444444333333478999999999987 89999999999999999999999999752 2
Q ss_pred ------CCchhHHHHhhcCcEEEEEEe------ecCCCCCCC-----------cccccEEEEecCC-ceeeecc-cce--
Q 019198 100 ------VSSLNVQLRKELDLYAALVNC------FNLPGLPTR-----------HQNVDIVVIRENT-EGEYSGL-EHE-- 152 (344)
Q Consensus 100 ------~~s~~~~LR~~ldlyanvRP~------~~~pg~~~~-----------~~~vDivIvREnt-eG~Y~g~-e~~-- 152 (344)
++|+|++||+.||||+|+||| +++||+++| ++++|++|+|||| ||+|++. +++
T Consensus 88 ~~l~~~~~S~n~~LR~~ldlyanvRPi~~k~i~~~~pg~~~~i~i~Ren~e~~y~~id~vi~rent~e~~y~~~~g~~~~ 167 (413)
T PTZ00435 88 FNLKKMWKSPNGTIRNILDGTVFREPIIIKNIPRLVPGWKKPIVIGRHAFGDQYKATDFVVDGPGKLELVFTPADGSEPQ 167 (413)
T ss_pred cccccccCCchHHHHHHcCCeEEEeeeeccccCccCCCCCCCeeeeccccCCCcCceEEEEecCCEEEEEEecCCCCcce
Confidence 689999999999999999998 557888766 6789999999999 9999998 543
Q ss_pred -------eeCCEEEEEEEeeHHHHHHHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHh-hCC------Cc
Q 019198 153 -------VVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVAT-KYP------SI 218 (344)
Q Consensus 153 -------~~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~-eyp------~I 218 (344)
..++++... ++||+++|||+|+||+||++| +++||++||+||||.+||||+++|+|+++ +|| +|
T Consensus 168 ~~~~~~~~~~~v~~~~-~~Tr~~~eRIar~AF~~A~~r-~~~Vt~v~KaNVlk~~dglf~~~~~eva~~eYpe~~~~~~I 245 (413)
T PTZ00435 168 RVDVFDFKGGGVAMGM-YNTDESIEGFARSCFQYALDR-KMPLYLSTKNTILKKYDGRFKDIFQEIYDEEYKAKFEKAGL 245 (413)
T ss_pred eeeeeccCCCCeeEEE-EeCHHHHHHHHHHHHHHHHHc-CCCEEEECCCCcchhhHHHHHHHHHHHHHHhCccccccCCE
Confidence 236777655 999999999999999999999 45899999999999999999999999995 799 99
Q ss_pred eeeeeeHhHHHHHHHhCCCCccEEecCCcchhhhhhhhhhhcCCCccccCcccCC--------------CcCc-----cC
Q 019198 219 KYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGNVG--------------NEKV-----VE 279 (344)
Q Consensus 219 ~~~~~~vD~~~~~Lv~~P~~fdVIvt~NlfGDIlSDlaa~l~GglGl~pSa~nig--------------APdi-----aG 279 (344)
+++|++||++|||||++|++| ||||+|||||||||++|+++||+||+||+ |+| |||| +|
T Consensus 246 ~~~~~lVDa~~m~lv~~P~~f-ViV~~NlfGDIlSDlaA~l~GglGlapSa-nig~d~~~a~FEp~HGSApdi~~~~iaG 323 (413)
T PTZ00435 246 WYEHRLIDDMVAQAIKSEGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSV-LVCPDGKTVEAEAAHGTVTRHYRQHQKG 323 (413)
T ss_pred EEEEeeHHHHHHHHhhCCCCe-EEEeecccchhhhHHHHHhcCcccccccc-eeCCCCCeEEEEcCcCCccccchhhhcC
Confidence 999999999999999999999 99999999999999999999999999999 998 9997 89
Q ss_pred c-CCCChhHHHHHHHHHhhhcCc-------hHHHHHHHHHHHHHHHcCcccCCCCC----CC--------CcHHHHHHHH
Q 019198 280 Q-KKANPVALLLSSAMMLRHLQF-------PSFADRLETAVKRVISEEKYRTKDLG----GG--------CTTQQIVDAV 339 (344)
Q Consensus 280 k-~iANP~a~Ils~ammL~~lg~-------~~~a~~i~~Av~~~l~~g~~~T~Dlg----G~--------~sT~e~~~aV 339 (344)
| ++|||+|+|||++|||+|||+ .++|++|++||.+++++|. +|+||| |+ ++|+||+|+|
T Consensus 324 k~~~ANP~A~Ils~ammL~~lg~~~~~~~~~~~A~~ie~Av~~~i~~g~-~T~Dlg~~~~G~~~~~~~~~~~T~e~~daV 402 (413)
T PTZ00435 324 KETSTNSIASIFAWTRGLAHRAKLDNNQELVKFCQALERSCIETIEAGF-MTKDLAICVHGSSKVTRSDYLNTEEFIDKV 402 (413)
T ss_pred CCCccChHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHHcCC-CccccccccCCCccccCCCCcCHHHHHHHH
Confidence 6 799999999999999999995 6889999999999999995 899997 74 8999999999
Q ss_pred HHhc
Q 019198 340 IANL 343 (344)
Q Consensus 340 ~~~l 343 (344)
+++|
T Consensus 403 ~~~L 406 (413)
T PTZ00435 403 AEKL 406 (413)
T ss_pred HHHH
Confidence 9987
No 27
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=4.1e-84 Score=647.27 Aligned_cols=307 Identities=21% Similarity=0.235 Sum_probs=283.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEeeCC-----CCCCcHHHHHHHHhcCeEEEccccCCCC------
Q 019198 29 PRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD-----MKRVPQQVLDSIRKNKVCLKGGLKTPVG------ 97 (344)
Q Consensus 29 ~~~I~vi~GDGIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~-----g~~lp~~~~~~~~~~da~l~G~~~~p~~------ 97 (344)
+-+|++|+|||||+|||+.++++|...+++++|+++|+|.+ |+.+|+++++++|++|++||||++||..
T Consensus 77 ~~piv~~~GDem~r~i~~~i~~~li~p~~di~~~~~dlG~e~rd~Tgd~v~~da~~aikk~~v~lKgAt~TP~~~rv~e~ 156 (483)
T PLN03065 77 QNPIVEMDGDEMTRVIWQMIKDKLIFPYLDLDIKYFDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEF 156 (483)
T ss_pred cCCeEEecCCcchHHHHHHHHHHHhcCCCCceEEEEeCcHHHHHhhCCcCCHHHHHHHHHcCEEEECcccCCcccccccc
Confidence 46799999999999999999999999999999999999987 8999999999999999999999999964
Q ss_pred ---CCCCchhHHHHhhcCcEEEEEEe------ecCCCCCCC-----------cccccEEEE----------ecCCceeee
Q 019198 98 ---GGVSSLNVQLRKELDLYAALVNC------FNLPGLPTR-----------HQNVDIVVI----------RENTEGEYS 147 (344)
Q Consensus 98 ---~~~~s~~~~LR~~ldlyanvRP~------~~~pg~~~~-----------~~~vDivIv----------REnteG~Y~ 147 (344)
++|+|||++||+.||||+|+||| +++||+..| ++++|++|+ |||||+
T Consensus 157 ~lk~~w~SpN~tiR~~Ldl~v~rrPi~~~ni~r~vpg~~~pI~i~Rha~gd~Y~~iD~vi~~~g~~~~~~~rEnte~--- 233 (483)
T PLN03065 157 GLKSMWRSPNGTIRNILNGTVFREPILCKNIPRLVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFVPEDGNA--- 233 (483)
T ss_pred ccccccCCccHHHHHHcCCeEEeeeeeccccCccCCCCCCCeEEeecccCCCcCceEEEEecCCeeEEEeecCCCCC---
Confidence 35689999999999999999999 788998765 577899888 999986
Q ss_pred cccce----eeCCEEEEEEEeeHHHHHHHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHH-----hhCC--
Q 019198 148 GLEHE----VVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVA-----TKYP-- 216 (344)
Q Consensus 148 g~e~~----~~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva-----~eyp-- 216 (344)
+.++. ..++++++. ++|+++++||+|+||+||++| +++||++||+||||.+||+|+++|+||+ ++||
T Consensus 234 ~~e~~v~~f~~~gva~~~-~nT~~sieriAr~AF~yA~~r-k~~Vt~v~KaNILK~~DGlF~dif~eVa~~eyk~~yp~~ 311 (483)
T PLN03065 234 PVELDVYDFKGPGVALAM-YNVDESIRAFAESSMAMALQK-KWPLYLSTKNTILKKYDGRFKDIFQEVYEEQWKQKFEEH 311 (483)
T ss_pred cceeEeeccCCCCeEEEE-EECHHHHHHHHHHHHHHHHHc-CCCEEEEeCCCcccchHHHHHHHHHHHHHHhhhhcCCCC
Confidence 45544 246788875 899999999999999999998 5689999999999999999999999998 4599
Q ss_pred CceeeeeeHhHHHHHHHhCCCCccEEecCCcchhhhhhhhhhhcCCCccccCcccCC--------------CcC-----c
Q 019198 217 SIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGNVG--------------NEK-----V 277 (344)
Q Consensus 217 ~I~~~~~~vD~~~~~Lv~~P~~fdVIvt~NlfGDIlSDlaa~l~GglGl~pSa~nig--------------APd-----i 277 (344)
+|+++|++||+||||||++|++| ||||+|||||||||++|+++|||||+||+ |+| ||| |
T Consensus 312 ~I~~e~~lIDa~~~~lvk~P~~F-Viv~~NlfGDIlSDl~A~l~GsLGl~pSa-nig~dg~~~~fEa~HGSapd~~~~~i 389 (483)
T PLN03065 312 SIWYEHRLIDDMVAYAVKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSV-LLSSDGKTLEAEAAHGTVTRHFRLHQ 389 (483)
T ss_pred CceEEeeeHHHHHHHHHhCCCCc-EEEeeccchhhhhHHHHHhcCchhhcccc-eeCCCCceEEEecCcCcCccccchhc
Confidence 69999999999999999999999 99999999999999999999999999999 998 999 8
Q ss_pred cCcC-CCChhHHHHHHHHHhhhcCc-------hHHHHHHHHHHHHHHHcCcccCCCCC----CC-------CcHHHHHHH
Q 019198 278 VEQK-KANPVALLLSSAMMLRHLQF-------PSFADRLETAVKRVISEEKYRTKDLG----GG-------CTTQQIVDA 338 (344)
Q Consensus 278 aGk~-iANP~a~Ils~ammL~~lg~-------~~~a~~i~~Av~~~l~~g~~~T~Dlg----G~-------~sT~e~~~a 338 (344)
+||+ +|||+|+|+|++|||+|+|. .++|++||+||.+++++|. +|+||| |. ++|+||+|+
T Consensus 390 aGk~t~ANPiA~IlA~ammL~hlg~ld~~~~l~~~A~~Le~Av~~tie~G~-~T~DLg~~~~G~~~~~~~~~~T~ef~da 468 (483)
T PLN03065 390 KGQETSTNSIASIFAWTRGLEHRAKLDKNEELLDFVHKLESACIETVESGK-MTKDLAILIHGPKVSREFYLNTEEFIDA 468 (483)
T ss_pred cCCCCCcChHHHHHHHHHHHHHhCCCCccchHHHHHHHHHHHHHHHHHcCC-cccccccccCCCcccCCCCcCHHHHHHH
Confidence 9999 49999999999999999998 6789999999999999995 899996 63 899999999
Q ss_pred HHHhc
Q 019198 339 VIANL 343 (344)
Q Consensus 339 V~~~l 343 (344)
|+++|
T Consensus 469 V~~~L 473 (483)
T PLN03065 469 VAQTL 473 (483)
T ss_pred HHHHH
Confidence 99987
No 28
>KOG0786 consensus 3-isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-81 Score=580.40 Aligned_cols=313 Identities=30% Similarity=0.480 Sum_probs=286.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHc----CCCeeEEEEEeeCC-----CCCCcHHHHHHHHhcCeEEEccccCCCC-
Q 019198 28 SPRAVTLIPGDGIGPLVTNAVEQVMEAM----HAPIYFEKYEVHGD-----MKRVPQQVLDSIRKNKVCLKGGLKTPVG- 97 (344)
Q Consensus 28 ~~~~I~vi~GDGIGpEV~~~~~~vl~~~----~~~i~~~~~~~g~~-----g~~lp~~~~~~~~~~da~l~G~~~~p~~- 97 (344)
.+|+|+++|||||||||+..+++||+.+ +++|+|++..+|+. |.++|+|++++.|++|++|+|+++.|+.
T Consensus 3 ~~~~i~llpgd~ig~ev~s~a~~vlq~~~~l~~vefdf~~~~iggaald~~gvplpeet~~aak~sdavllgaigg~kw~ 82 (363)
T KOG0786|consen 3 KRYNITLLPGDGIGPEVISVAKNVLQKAGSLEGVEFDFEEMPIGGAALDLVGVPLPEETLTAAKKSDAVLLGAIGGYKWD 82 (363)
T ss_pred CcceEEEcCCCCcCHHHHHHHHHHHHHhccccceeeccccCcccccchhccCCCCCHHHHhhhhhcceeEeecccCcccC
Confidence 4799999999999999999999999997 68899999999987 9999999999999999999999999863
Q ss_pred CCC---CchhHHHHhhcCcEEEEEEeecCCCCC--CCc-----ccccEEEEecCCceeeeccccee-eCCEEEEEEEeeH
Q 019198 98 GGV---SSLNVQLRKELDLYAALVNCFNLPGLP--TRH-----QNVDIVVIRENTEGEYSGLEHEV-VPGVVESLKVITK 166 (344)
Q Consensus 98 ~~~---~s~~~~LR~~ldlyanvRP~~~~pg~~--~~~-----~~vDivIvREnteG~Y~g~e~~~-~~~va~~~~~~Tr 166 (344)
.+. ...++.||++|.+|+|+||+..+|.+- +++ +++|++||||.|+|+|+|..... .+++++++.+|+-
T Consensus 83 ~~~lrpe~gll~ir~~lkvfanlrp~~~~~qlvd~s~lk~e~aeg~d~mvvrel~ggiyfge~r~eng~gva~dte~Ya~ 162 (363)
T KOG0786|consen 83 KNHLRPEMGLLKIRRDLKVFANLRPATVLPQLVDASTLKKEVAEGVDMMVVRELTGGIYFGEPRNENGEGVAFDTEIYAA 162 (363)
T ss_pred cCCcChhhhHHHHHHHHHHHhcCCcchhhHhhhccccccHHHhcCcceEEeeeecCceeecCcccCCCcceeeccccccH
Confidence 232 234899999999999999999988662 333 68999999999999999987543 3579999999999
Q ss_pred HHHHHHHHHHHHHHHhc-CCCceEEEeccchhhhchHHHHHHHHH-HHhhCCCceeeeeeHhHHHHHHHhCCCCcc-EEe
Q 019198 167 FCSERIAKYAFEYAYLN-YRKKVTAVHKANIMKLADGLFLESCRE-VATKYPSIKYNEIIVDNCCMQLVSKPEQFD-VMV 243 (344)
Q Consensus 167 ~~~eRiar~AFe~A~~r-~~~~Vt~v~KaNvlk~tdglf~~~~~e-va~eyp~I~~~~~~vD~~~~~Lv~~P~~fd-VIv 243 (344)
.++.||+|.||++|++| +..++|++||+||+. ++.|||+.+.+ ++.|||++++.|+|||+++||||++|.+|| +||
T Consensus 163 ~Ev~RIaR~Aa~~A~~~~pp~pl~slDKANVLa-aSrLWRKtV~~~~k~EyP~l~l~hqliDsAAM~Lvk~P~~lng~iv 241 (363)
T KOG0786|consen 163 HEVDRIARVAAETARKRRPPGPLCSLDKANVLA-ASRLWRKTVTKALKSEYPDLELSHQLIDSAAMQLVKDPKQLNGTIV 241 (363)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCccccchhhHHH-HHHHHHHHHHHHHHhhCCCcchhhhhhhHHHHHHhcCchhcCceEE
Confidence 99999999999999997 237999999999997 67999998886 578999999999999999999999999999 999
Q ss_pred cCCcchhhhhhhhhhhcCCCccccCcccCC------------------CcCccCcCCCChhHHHHHHHHHhhh-cCchHH
Q 019198 244 TPNLYGNLVSNTAAGIAGGTGVMPGAGNVG------------------NEKVVEQKKANPVALLLSSAMMLRH-LQFPSF 304 (344)
Q Consensus 244 t~NlfGDIlSDlaa~l~GglGl~pSa~nig------------------APdiaGk~iANP~a~Ils~ammL~~-lg~~~~ 304 (344)
|.|+|||||||+++.+.||+||.||| +++ ||||+|||++||+|+|||++|||+| ||++++
T Consensus 242 T~NiFGDIiSDEASvIpGSlGlLPSA-SLs~v~~~es~~gL~EPiHGSAPDiagk~kvNPlaTILSAamlLkygLn~pke 320 (363)
T KOG0786|consen 242 TNNIFGDIISDEASVIPGSLGLLPSA-SLSGVVSEESGPGLFEPIHGSAPDIAGKDKVNPLATILSAAMLLKYGLNEPKE 320 (363)
T ss_pred eccchhhhhccccccccCccccccch-hhcCCcccccCCcccccCCCCCCCcCCCCccChHHHHHHHHHHHHhcCCChhh
Confidence 99999999999999999999999999 986 9999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHcCcccCCCCCCCCcHHHHHHHHHHhc
Q 019198 305 ADRLETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANL 343 (344)
Q Consensus 305 a~~i~~Av~~~l~~g~~~T~DlgG~~sT~e~~~aV~~~l 343 (344)
|++||+||.+++..| .+|.||||..||.+.+++|.+.+
T Consensus 321 akaIEdAV~kvLd~G-~rTgDlgg~~st~~~~kav~EEv 358 (363)
T KOG0786|consen 321 AKAIEDAVVKVLDKG-FRTGDLGGPGSTLVGCKAVGEEV 358 (363)
T ss_pred HHHHHHHHHHHHhcc-ccccccCCCCcchhhHHHHHHHH
Confidence 999999999999999 49999999988777777776654
No 29
>COG0538 Icd Isocitrate dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=5.6e-80 Score=596.00 Aligned_cols=315 Identities=39% Similarity=0.591 Sum_probs=297.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHc-------CCCeeEEEEEeeCC-----CCCCcHHHHHHHHhcCeEEEccccCC
Q 019198 28 SPRAVTLIPGDGIGPLVTNAVEQVMEAM-------HAPIYFEKYEVHGD-----MKRVPQQVLDSIRKNKVCLKGGLKTP 95 (344)
Q Consensus 28 ~~~~I~vi~GDGIGpEV~~~~~~vl~~~-------~~~i~~~~~~~g~~-----g~~lp~~~~~~~~~~da~l~G~~~~p 95 (344)
.+..|.+++|||||+||++++.+|++++ ..+|+|.++++|.+ |+.+|+|+++++|++.+.+|||++||
T Consensus 17 ~~piiP~IegDgiG~eit~~~~kvi~aav~k~Y~g~~~I~w~e~~aG~ka~d~tg~~lp~etl~aikky~VaIKgpl~TP 96 (407)
T COG0538 17 DKPIIPFIEGDGIGDEITRAIWKVIDAAVEKAYGGERKIEWKEVDAGEKARDKTGDQLPIETLEAIKKYGVAIKGPLTTP 96 (407)
T ss_pred CCcccceEecCCCcHHHHHHHHHHHHHHHHhhcCCcceeEEEEEecchHHHHhhcCcCCHHHHHHHHHhCEEeeccccCc
Confidence 4678999999999999999999999996 37899999999987 99999999999999999999999999
Q ss_pred CCCCCCchhHHHHhhcCcEEEEEEeecCCCCCCCcc---cccEEEEecCCceeeecccceee------------------
Q 019198 96 VGGGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQ---NVDIVVIRENTEGEYSGLEHEVV------------------ 154 (344)
Q Consensus 96 ~~~~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~~---~vDivIvREnteG~Y~g~e~~~~------------------ 154 (344)
.+.+++|+|.+||+.||||+|+|||+.+||+++|.+ .+|+||+|||||+.|.|+|+...
T Consensus 97 vg~g~rSlNvtlRq~Ldly~~~rPv~y~~gvPspvk~pe~~dmVIfRenteDiYagiE~~~~s~~a~kl~~fl~~e~~~~ 176 (407)
T COG0538 97 VGKGWRSLNVTLRQILDLYVFRRPVRYFPGVPSPVKRPEKVDMVIFRENTEDIYAGIEWKAGSPEALKLIFFLEDEMGVK 176 (407)
T ss_pred ccccccCchHHHHHHcCceEeeeeEEecCCCCCCCCCcccCCeEEEeccccchhheeeeccCCcchhhhhhhhhcccccc
Confidence 999999999999999999999999999999999875 49999999999999999987531
Q ss_pred -----CCEEEEEEEeeHHHHHHHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHhh--C------------
Q 019198 155 -----PGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATK--Y------------ 215 (344)
Q Consensus 155 -----~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~e--y------------ 215 (344)
++..+.++.|++++++|++|.||+||.+++|+.||++||.||||.|+|-|++|+.||+++ |
T Consensus 177 ~i~~pe~~GIgikp~s~~~s~Rlvr~ai~yAi~~~r~~VtlvhKgnImK~teGaFkdw~yeva~~~ef~~~~~~~~~~~~ 256 (407)
T COG0538 177 KIRFPEDSGIGIKPISKEGSIRLVRAAIEYAIENKRKSVTLVHKGNIMKFTEGAFKDWGYEVAEEEEFGDEVVTGKEKFE 256 (407)
T ss_pred eEecCCCCceEEEecCchhhHHHHHHHHHHHHHcCCceEEEEecCeeeecccchHHHHHHHHHhhhcccccccccchhhh
Confidence 245678999999999999999999999998899999999999999999999999999864 2
Q ss_pred -CC----ceeeeeeHhHHHHHHHhCCCCccEEecCCcchhhhhhhhhhhcCCCccccCcccCC------------CcCcc
Q 019198 216 -PS----IKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGNVG------------NEKVV 278 (344)
Q Consensus 216 -p~----I~~~~~~vD~~~~~Lv~~P~~fdVIvt~NlfGDIlSDlaa~l~GglGl~pSa~nig------------APdia 278 (344)
.+ |.++|+++|+|.+|++++|+.||||.|+||.||++||.+|+++||+||+||+ |+| ||+++
T Consensus 257 ~~~~~gkI~~~driaD~mlqQil~r~~eydViA~~NlnGDy~SDa~Aa~vGglGi~pga-ni~~~~~~fEA~HGTapk~a 335 (407)
T COG0538 257 LKGPKGKIVYKDRIADDMLQQILLRPGEYDVIATKNLNGDYISDALAAQVGGLGLAPGA-NIGDGTAEFEATHGTAPKYA 335 (407)
T ss_pred ccCcCceEEEehhhHHHHHHHHhcCCCCceEEEeccCCccHHHHHHHHhcCCccccccc-eecCceEEEEeccCcccccc
Confidence 24 9999999999999999999999999999999999999999999999999999 998 99999
Q ss_pred CcCCCChhHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHcCcccCCCCC----C---CCcHHHHHHHHHHhcC
Q 019198 279 EQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEEKYRTKDLG----G---GCTTQQIVDAVIANLD 344 (344)
Q Consensus 279 Gk~iANP~a~Ils~ammL~~lg~~~~a~~i~~Av~~~l~~g~~~T~Dlg----G---~~sT~e~~~aV~~~l~ 344 (344)
||+++||+|.|||+.|||+|+||.++++.|++|+.+++++|+ .|+||. + .++|+||+|+|+++|+
T Consensus 336 G~~~~Np~a~Ils~~~ml~~~Gw~eaa~li~~a~~~ti~~~~-vT~DlArl~~~~~~~v~tsEF~d~ii~~l~ 407 (407)
T COG0538 336 GKDSTNPIASILSGTMMLRHRGWLEAADLIEKAVEDTIESGK-VTYDLARLMGGAKRYLSTSEFADAIIENLK 407 (407)
T ss_pred CcCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCc-eeHHHHHhhCCCccceeHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999996 899994 4 4799999999999985
No 30
>PLN00096 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=7e-67 Score=511.61 Aligned_cols=304 Identities=18% Similarity=0.220 Sum_probs=256.4
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHcCCCee-EEEEEeeCC-----CCCCcHHHHHHHHhcCeEEEccccCCCC---------
Q 019198 33 TLIPGDGIGPLVTNAVEQVMEAMHAPIY-FEKYEVHGD-----MKRVPQQVLDSIRKNKVCLKGGLKTPVG--------- 97 (344)
Q Consensus 33 ~vi~GDGIGpEV~~~~~~vl~~~~~~i~-~~~~~~g~~-----g~~lp~~~~~~~~~~da~l~G~~~~p~~--------- 97 (344)
+.+.||.+-+-+|+..++-|-...++++ |+++|+|.+ .+.+.-++.++++++.+.+|||+.||..
T Consensus 2 v~~~gdemtr~~~~~i~~~li~p~~d~~~~~y~DL~~~~Rd~T~dqvt~daa~a~~~~~vgvKcatiTp~~~rv~e~~lk 81 (393)
T PLN00096 2 VYVAGEEMTRYTMDLILAKWIEPHVDTSAWEFFDLRAKNRDDTEDQVLRDVIEAGARLKAIFKEPTITPTADQVKRLGLK 81 (393)
T ss_pred eeecchHHHHHHHHHHHHhhccceeccccceeeccCCccccccCCcchHHHHHHHHHhCeeeeecccCCCHHHHHhhchh
Confidence 3567875555555554444444578996 999999987 6789999999999999999999999962
Q ss_pred CCCCchhHHHHhhcCc-EEEEEEeecCCCCCCCcccccEEEEecCCceeeecccceee----------------------
Q 019198 98 GGVSSLNVQLRKELDL-YAALVNCFNLPGLPTRHQNVDIVVIRENTEGEYSGLEHEVV---------------------- 154 (344)
Q Consensus 98 ~~~~s~~~~LR~~ldl-yanvRP~~~~pg~~~~~~~vDivIvREnteG~Y~g~e~~~~---------------------- 154 (344)
..|+|||.+||+.||. .+..+|+. +++++ |.=...++|-|..-+|.|.. +....
T Consensus 82 ~~w~sPNgtiR~~l~G~tvfR~pi~-~~~i~-~~w~kpi~i~Rha~gd~y~a-~~~~~~~g~~~~~~~~~~g~~~~~~~~ 158 (393)
T PLN00096 82 KAWGSPNGAMRRGWNGITISRDTIH-IDGVE-LGYKKPVFFERHAVGGEYSA-GYKIVGKGTLVTTFVPEEGGKPIVVDD 158 (393)
T ss_pred hhcCCCcHHHHhhcCCceEeeCCEe-cCCCC-CCccCceEEEeeccCCcccc-ceEecCCcEEEEEEEeCCCCCceEEEE
Confidence 5789999999999999 88888876 33332 11124567778887777755 32110
Q ss_pred ---C--CEEEEEEEeeHHHHHHHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHH-hhC-----------CC
Q 019198 155 ---P--GVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVA-TKY-----------PS 217 (344)
Q Consensus 155 ---~--~va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva-~ey-----------p~ 217 (344)
. +-+.....+|.+.++||+|+||+||++| +++||++||+||||+++|||+ +|+|++ ++| |+
T Consensus 159 ~~f~~~~gv~~~~~N~~~si~RiAr~AF~~A~~r-~~~Vt~v~KaNILK~tdg~f~-if~eVa~~eyk~~f~~~~~~~p~ 236 (393)
T PLN00096 159 RTITDDLNAVVTYHNPLDNVHHLARIFFGRCLDA-GIVPYVVTKKTVFKWQEPFWE-IMKKVFDEEFKSKFVDKGVMKSG 236 (393)
T ss_pred EecCCCCeEEEEeccCHHHHHHHHHHHHHHHHHh-CCcEEEEeCccccccchHHHH-HHHHHHHHHHhhhhhhcccCCCc
Confidence 1 1122457999999999999999999998 567999999999999999998 999997 788 77
Q ss_pred ceeeeeeHhHHHHHHHhCCCCccEEecCCcchhhhhhhhhhhcCCCccccCcccCC-----------------CcCcc--
Q 019198 218 IKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGNVG-----------------NEKVV-- 278 (344)
Q Consensus 218 I~~~~~~vD~~~~~Lv~~P~~fdVIvt~NlfGDIlSDlaa~l~GglGl~pSa~nig-----------------APdia-- 278 (344)
|+++|++||+|+||||++|++||||||+|||||||||++|+++|||||+||+ |+| ||||+
T Consensus 237 V~~e~~lIDa~~~qlVk~P~~fdViv~~NlfGDIlSDlaA~l~GsLGl~pSa-nig~d~dg~~~a~fEp~HGSApdiag~ 315 (393)
T PLN00096 237 DELVHLLSDAATMKLVVWTDGGFGMAAHNYDGDVLTDELAQVHKSPGFITSN-LVGVDENGTLIKEFEASHGTVTDMDEA 315 (393)
T ss_pred eEEEeeeHHHHHHHHHhCcccCCEEEECcccchHHHHHHHHhcCCccccccc-ccCCccCCccceEEEcCCCChHHhhhh
Confidence 9999999999999999999999999999999999999999999999999999 985 89999
Q ss_pred ---Cc-CCCChhHHHHHHHHHhhhc----Cc----hHHHHHHHHHHHHHHHcCcccCCCCCC--CCcHHHHHHHHHHhc
Q 019198 279 ---EQ-KKANPVALLLSSAMMLRHL----QF----PSFADRLETAVKRVISEEKYRTKDLGG--GCTTQQIVDAVIANL 343 (344)
Q Consensus 279 ---Gk-~iANP~a~Ils~ammL~~l----g~----~~~a~~i~~Av~~~l~~g~~~T~DlgG--~~sT~e~~~aV~~~l 343 (344)
|| ++|||+|+|||++|||+|+ |+ .++|++|++||.+++++|. +|+||+| .++|+||+|+|+++|
T Consensus 316 ~~~Gk~~~ANPiA~IlA~a~mL~~~~~l~g~~~~l~~~A~~Ie~Av~~tie~G~-~T~DL~g~~~~tT~ef~daI~~~L 393 (393)
T PLN00096 316 RLRGEETSLNPLGMVEGLIGAMNHAADVHGGKERVHPFTAKLRAVIHKLFREGR-GTRDLCGAGGLTTEQFIDAVAEEL 393 (393)
T ss_pred hhcCCCCccChHHHHHHHHHHHHhhcccCCCchhhHHHHHHHHHHHHHHHhcCC-cCcCCCCCCCCCHHHHHHHHHHhC
Confidence 89 5999999999999999998 66 5699999999999999994 8999955 789999999999876
No 31
>KOG1526 consensus NADP-dependent isocitrate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=2.4e-37 Score=292.20 Aligned_cols=310 Identities=23% Similarity=0.262 Sum_probs=256.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEeeCC-----CCCCcHHHHHHHHhcCeEEEccccCCCC-----
Q 019198 28 SPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD-----MKRVPQQVLDSIRKNKVCLKGGLKTPVG----- 97 (344)
Q Consensus 28 ~~~~I~vi~GDGIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~-----g~~lp~~~~~~~~~~da~l~G~~~~p~~----- 97 (344)
-..+|+-+.||.+-+-||...++-|-...+++++.++|+|-+ .+.+.-++.++++++++.+||++.||..
T Consensus 17 v~~pvVemdGDEmTRiIW~~Ik~KLIlPyldldlkyyDLgie~RD~T~DqVTid~A~A~lky~V~iKCATITPDEaRv~E 96 (422)
T KOG1526|consen 17 VANPVVEMDGDEMTRIIWKLIKEKLILPYLDLDLKYYDLGIENRDATNDQVTIDAAEAILKYNVGIKCATITPDEARVEE 96 (422)
T ss_pred ccCCeEEecccHHHHHHHHHHHhhcccceeeeceeeeecCCcccccccceeeHHHHHHHHHhCceeEEeecCCcHHHHHH
Confidence 346788999996666666666555555688999999999987 6789999999999999999999999962
Q ss_pred ----CCCCchhHHHHhhcCcEEEEEEee------cCCCCCCCc-----------ccccEEEEecCCc-eeeeccc-----
Q 019198 98 ----GGVSSLNVQLRKELDLYAALVNCF------NLPGLPTRH-----------QNVDIVVIRENTE-GEYSGLE----- 150 (344)
Q Consensus 98 ----~~~~s~~~~LR~~ldlyanvRP~~------~~pg~~~~~-----------~~vDivIvREnte-G~Y~g~e----- 150 (344)
++|+|||.++|..|+..++.+|+. ..||+..|+ +..|+||-...+- -.|....
T Consensus 97 f~LkkMWkSPNGTIRNILgGTVFREpIi~kniPrlVpgW~kPI~IGRHAfgDQYkatD~vv~~~gkl~l~f~~~dg~~~~ 176 (422)
T KOG1526|consen 97 FNLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPIIIGRHAFGDQYKATDFVVPGPGKLELVFTPSDGTQKV 176 (422)
T ss_pred hhhHHHhcCCCcchhhhcCceeeccceecCCcccccCCCccceEEeeccccccceeeeEeecCCCeEEEEEecCCCCcce
Confidence 478999999999999999999986 246665542 3466665544321 1222111
Q ss_pred -cee----eCCEEEEEEEeeHHHHHHHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHH-hhCC------Cc
Q 019198 151 -HEV----VPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVA-TKYP------SI 218 (344)
Q Consensus 151 -~~~----~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva-~eyp------~I 218 (344)
+.+ .+|++ ....+|.+.++-+++.+|++|.++ +-++++.+|.++||.+||-|+++|+|+. ++|. +|
T Consensus 177 ~~~V~~f~~~G~~-~~m~~~dds~~~FAhssf~~Al~k-k~pLylsTKNTILKkYDgrFKdiFqeiye~~yk~kfe~~~I 254 (422)
T KOG1526|consen 177 TLKVYDFKGSGVA-AMMYNTDDSIRGFAHSSFQYALQK-KWPLYLSTKNTILKKYDGRFKDIFQEIYEKQYKSKFEALGI 254 (422)
T ss_pred eEEEEecCCCcee-EEEeeccchhhHHHHHHHHHHHHh-cCceeeeccchHHHHhCChHHHHHHHHHHHHHHHHHHhhcc
Confidence 111 13344 556788888999999999999998 7899999999999999999999999996 5664 79
Q ss_pred eeeeeeHhHHHHHHHhCCCCccEEecCCcchhhhhhhhhhhcCCCccccCcccCCCcC--------------------cc
Q 019198 219 KYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGNVGNEK--------------------VV 278 (344)
Q Consensus 219 ~~~~~~vD~~~~~Lv~~P~~fdVIvt~NlfGDIlSDlaa~l~GglGl~pSa~nigAPd--------------------ia 278 (344)
+|||++||+|++|++++-+.| |+.|.|+.||+.||..|+-.|||||+.|. .+ .|| ..
T Consensus 255 wYEHRLIDDmVAqa~KS~GGf-vwAcKNYDGDVqSD~vAQg~GSLGlMTSV-Lv-~pdGKT~EaEAAHGTVtRHyr~hqk 331 (422)
T KOG1526|consen 255 WYEHRLIDDMVAQAMKSEGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSV-LV-CPDGKTVEAEAAHGTVTRHYRMHQK 331 (422)
T ss_pred hhhhhhHHHHHHHHHhcCCce-EEEeecCCCchhhhHHHhcccchhhheeE-EE-cCCCCeeeeeccccchhHHHHHHhc
Confidence 999999999999999999999 99999999999999999999999999999 88 555 34
Q ss_pred Cc-CCCChhHHHHHHHHHhhhcC-------chHHHHHHHHHHHHHHHcCcccCCCC----CC------CCcHHHHHHHHH
Q 019198 279 EQ-KKANPVALLLSSAMMLRHLQ-------FPSFADRLETAVKRVISEEKYRTKDL----GG------GCTTQQIVDAVI 340 (344)
Q Consensus 279 Gk-~iANP~a~Ils~ammL~~lg-------~~~~a~~i~~Av~~~l~~g~~~T~Dl----gG------~~sT~e~~~aV~ 340 (344)
|+ ...||||+|+||.--|.|.| +..+++.+|+|...++++|+ .|+|| +| .++|+||.|+|.
T Consensus 332 G~eTSTN~IASIFAWtRgl~hR~kLD~n~~l~~F~~~LE~aci~tve~G~-MTKDLal~i~g~~~r~~y~~T~eFidav~ 410 (422)
T KOG1526|consen 332 GQETSTNSIASIFAWTRGLAHRAKLDNNEALAKFANALEKACIETVESGK-MTKDLALCIHGKVERSDYLNTEEFIDAVA 410 (422)
T ss_pred CCCccCcchHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhcc-chHhHHHHhcCCccccccccHHHHHHHHH
Confidence 65 79999999999999999966 35789999999999999996 89999 34 368999999999
Q ss_pred Hhc
Q 019198 341 ANL 343 (344)
Q Consensus 341 ~~l 343 (344)
++|
T Consensus 411 ~~L 413 (422)
T KOG1526|consen 411 SNL 413 (422)
T ss_pred HHH
Confidence 887
No 32
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=79.81 E-value=1.6 Score=43.40 Aligned_cols=123 Identities=17% Similarity=0.167 Sum_probs=66.1
Q ss_pred EeeHHHHHHHHHHHHHHHHhcCC--CceEE-EeccchhhhchHHH-HHHHHHHH---hh--CCCcee-eeeeHhHHHHHH
Q 019198 163 VITKFCSERIAKYAFEYAYLNYR--KKVTA-VHKANIMKLADGLF-LESCREVA---TK--YPSIKY-NEIIVDNCCMQL 232 (344)
Q Consensus 163 ~~Tr~~~eRiar~AFe~A~~r~~--~~Vt~-v~KaNvlk~tdglf-~~~~~eva---~e--yp~I~~-~~~~vD~~~~~L 232 (344)
.+|.+.+.+.++...+.-++-|. -|+-+ .=..+.=. .|+| +|.-+.+. ++ -.++++ --.-.|++..+-
T Consensus 177 ~it~e~i~~~i~~~~~~l~~~gi~~PrIaV~gLNPHAGE--~G~~G~EE~~iI~PAi~~~~~~G~~v~GP~paDt~F~~~ 254 (326)
T PRK03371 177 TLNTARVETVIGIADTFLKRVGYVKPRIAVAGVNPHAGE--NGLFGDEEIRIVTPAIEAMRAKGMDVYGPCPPDTVFLQA 254 (326)
T ss_pred HhCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCCCCCC--CCCCcHHHHHHHHHHHHHHHHCCCcccCCCCchhhcccc
Confidence 57888888888777765553332 23322 22222221 3666 44333321 11 013332 233446655443
Q ss_pred HhCCCCccEEecCCcchhhhhhhhhhhcCCCccccCcccC-------------C-CcCccCcCCCChhHHHHHHHHHh
Q 019198 233 VSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGNV-------------G-NEKVVEQKKANPVALLLSSAMML 296 (344)
Q Consensus 233 v~~P~~fdVIvt~NlfGDIlSDlaa~l~GglGl~pSa~ni-------------g-APdiaGk~iANP~a~Ils~ammL 296 (344)
.+ .+||++|+. |= |.+--=.-.++.--+. |+ | |-||||||+|||.+|+-|.-+..
T Consensus 255 ~~--~~~D~vvaM--YH----DQGliP~K~l~F~~gV-NvTlGLP~iRTS~DHGTAfDIAGkG~A~~~S~~~Ai~lA~ 323 (326)
T PRK03371 255 YE--GQYDMVVAM--YH----DQGHIPLKLLGFYDGV-NITAGLPFIRTSADHGTAFDIAWTGKAKSESMAVSIKLAM 323 (326)
T ss_pred cc--cCCCEEEEc--cc----cccchhheecccccce-EEecCCCeeEecCCCCchhhhhcCCcCCHHHHHHHHHHHH
Confidence 33 579988873 32 3332223333433344 43 3 89999999999999998876644
No 33
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=78.87 E-value=1.6 Score=43.35 Aligned_cols=124 Identities=13% Similarity=0.084 Sum_probs=68.7
Q ss_pred EeeHHHHHHHHHHHHHHHHhcCC--CceEE-EeccchhhhchHHH-HHHHHHHH---h--hCCCceee-eeeHhHHHHHH
Q 019198 163 VITKFCSERIAKYAFEYAYLNYR--KKVTA-VHKANIMKLADGLF-LESCREVA---T--KYPSIKYN-EIIVDNCCMQL 232 (344)
Q Consensus 163 ~~Tr~~~eRiar~AFe~A~~r~~--~~Vt~-v~KaNvlk~tdglf-~~~~~eva---~--eyp~I~~~-~~~vD~~~~~L 232 (344)
.+|.+.+.+.++.+.+.-+.-+. .|+-+ .=..+.=. .|+| +|.-+.+. + .-.+++++ -+-.|++-.+-
T Consensus 178 ~it~e~i~~~i~~~~~~l~~~gi~~PrIaV~GLNPHAGE--~G~~G~EE~~iI~PAI~~~~~~g~~v~GP~paDt~F~~~ 255 (332)
T PRK03743 178 YVTKERVLDYIQRCTKALEKLGIKNPKIAVAGLNPHSGE--HGLFGDEEVDEIIPAVEAAQEMGINVEGPVPADSVFHLA 255 (332)
T ss_pred HhCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCCCCCC--CCCCcHHHHHHHHHHHHHHHHCCCcccCCCCchhhcccc
Confidence 57888888888888886664331 23322 22222221 3566 33322221 1 11233332 34456665444
Q ss_pred HhCCCCccEEecCCcchhhhhhhhhhhcCCCccccCcccC-------------C-CcCccCcCCCChhHHHHHHHHHhh
Q 019198 233 VSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGNV-------------G-NEKVVEQKKANPVALLLSSAMMLR 297 (344)
Q Consensus 233 v~~P~~fdVIvt~NlfGDIlSDlaa~l~GglGl~pSa~ni-------------g-APdiaGk~iANP~a~Ils~ammL~ 297 (344)
.+ ++||++|+. |= |.+--=.-.++.--+. |+ | |-||||||+|||.+|+.|.-+..+
T Consensus 256 ~~--~~~D~vvaM--YH----DQGliP~K~l~F~~gV-NvTlGLP~iRTS~DHGTAfDIAGkg~A~~~S~~~Ai~lA~~ 325 (332)
T PRK03743 256 LQ--GRYDAVLSL--YH----DQGHIATKTLDFERTI-AITNGLPFLRTSVDHGTAFDIAGTGKASSVSMEEAILLAAK 325 (332)
T ss_pred cc--cCCCEEEEc--cc----ccCChhheecccCCce-EEecCCCeeEeCCCCcchhhhhcCCCCCHHHHHHHHHHHHH
Confidence 33 579988873 32 3333223333433344 43 3 889999999999999988776554
No 34
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=78.73 E-value=1.7 Score=43.25 Aligned_cols=124 Identities=13% Similarity=0.129 Sum_probs=66.2
Q ss_pred EeeHHHHHHHHHHHHHHHHhcCC--CceEEE-eccchhhhchHHH-HHHHHHH----Hh-hCCCcee-eeeeHhHHHHHH
Q 019198 163 VITKFCSERIAKYAFEYAYLNYR--KKVTAV-HKANIMKLADGLF-LESCREV----AT-KYPSIKY-NEIIVDNCCMQL 232 (344)
Q Consensus 163 ~~Tr~~~eRiar~AFe~A~~r~~--~~Vt~v-~KaNvlk~tdglf-~~~~~ev----a~-eyp~I~~-~~~~vD~~~~~L 232 (344)
.+|.+.+.+.++...+.-++.|- -|+-+. =..+.=. .|+| +|.-+.+ .+ .-.++++ --.-.|++..+-
T Consensus 178 ~it~e~i~~~i~~~~~~l~~~gi~~PrIaV~gLNPHAGE--~G~~G~EE~~iI~PAI~~~~~~G~~v~GP~paDt~F~~~ 255 (332)
T PRK00232 178 AITPERLEEVIRILHADLRRKGIAEPRIAVCGLNPHAGE--GGHFGREEIDIIIPALEELRAEGINLVGPLPADTLFQPA 255 (332)
T ss_pred HhCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeeCCCCCC--CCCCCHHHHHHHHHHHHHHHhCCCCcCCCCCchhhcccc
Confidence 57888888888888776663332 233322 1112111 3555 3322222 11 0113332 233446655444
Q ss_pred HhCCCCccEEecCCcchhhhhhhhhhhcCCCccccCcccC-------------C-CcCccCcCCCChhHHHHHHHHHhh
Q 019198 233 VSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGNV-------------G-NEKVVEQKKANPVALLLSSAMMLR 297 (344)
Q Consensus 233 v~~P~~fdVIvt~NlfGDIlSDlaa~l~GglGl~pSa~ni-------------g-APdiaGk~iANP~a~Ils~ammL~ 297 (344)
.+ .+||++|+. |= |.+--=.--+++--+. |+ | |-||||||+|||.+|+-|.-+..+
T Consensus 256 ~~--~~~D~vvaM--YH----DQGliP~K~l~F~~gV-NvTlGLPiiRTS~DHGTAfDIAGkg~A~~~S~~~Ai~lA~~ 325 (332)
T PRK00232 256 YL--GDADAVLAM--YH----DQGLPVLKYLGFGRGV-NITLGLPFIRTSVDHGTALDLAGKGIADVGSFITALNLAIR 325 (332)
T ss_pred cc--CCCCEEEEC--cc----cccchhheecccCcce-EEecCCCeeEeCCCCcchhhhhcCCCCCHHHHHHHHHHHHH
Confidence 33 579988873 32 2332222333333333 33 3 889999999999999988776544
No 35
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=77.85 E-value=1.8 Score=43.27 Aligned_cols=126 Identities=13% Similarity=0.104 Sum_probs=69.5
Q ss_pred EeeHHHHHHHHHHHHHHHHh-cC--CCceEEE-eccchhhhchHHH-HHH-------HHHHHhhCCCceee-eeeHhHHH
Q 019198 163 VITKFCSERIAKYAFEYAYL-NY--RKKVTAV-HKANIMKLADGLF-LES-------CREVATKYPSIKYN-EIIVDNCC 229 (344)
Q Consensus 163 ~~Tr~~~eRiar~AFe~A~~-r~--~~~Vt~v-~KaNvlk~tdglf-~~~-------~~eva~eyp~I~~~-~~~vD~~~ 229 (344)
.+|.+.+.+-++.+.+.-++ -| +-|+-+. =..+.-. .|+| +|. .++..++.+++++. -.-.|++.
T Consensus 180 ~it~~~I~~~i~~~~~~l~~~~gi~~PrIaV~GLNPHAGE--~G~~G~EE~~iI~PAIe~~r~~g~g~~v~GP~paDt~F 257 (345)
T PRK02746 180 TLTPELITSKLDLLIDFLQRDFGIEKPRIAIAGLNPHAGE--QGQLGTEEKDWLIPWLESWRQKNPDIQLLGPIPPDTCW 257 (345)
T ss_pred HhCHHHHHHHHHHHHHHHHHHcCCCCCcEEEEeeCCCCCC--CCCCcHHHHHHHHHHHHHHHhcCCCceeeCCCCchhhc
Confidence 56788888777777665553 22 2233332 1122221 3455 332 22223333345543 34457776
Q ss_pred HHHHhC------CCCccEEecCCcchhhhhhhhhhhcCCCccccCcccC-------------C-CcCccCcCCCChhHHH
Q 019198 230 MQLVSK------PEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGNV-------------G-NEKVVEQKKANPVALL 289 (344)
Q Consensus 230 ~~Lv~~------P~~fdVIvt~NlfGDIlSDlaa~l~GglGl~pSa~ni-------------g-APdiaGk~iANP~a~I 289 (344)
.+-.+. ..+||++|+. |= |.+--=.--++.--+. |+ | |-||||||+|||.+|+
T Consensus 258 ~~~~~~~~~~~~~~~~D~vvaM--YH----DQGliP~K~l~F~~gV-NvTlGLP~iRTS~DHGTAfDIAGkg~A~~~S~~ 330 (345)
T PRK02746 258 VSPAQAWYGKGVAEAPDGYLAL--YH----DQGLIPVKLMAFDRAV-NTTIGLPFIRTSPDHGTAFDIAGKGIARPQSMK 330 (345)
T ss_pred cccccccccccccCCCCEEEEC--cc----cCCChhheeeccCcce-EEecCCCeeEeCCCCcchhhhhcCCCCCHHHHH
Confidence 665542 2579999984 33 3332223333333444 43 3 8899999999999999
Q ss_pred HHHHHHhh
Q 019198 290 LSSAMMLR 297 (344)
Q Consensus 290 ls~ammL~ 297 (344)
-|.-+..+
T Consensus 331 ~Ai~lA~~ 338 (345)
T PRK02746 331 AAIKLAWE 338 (345)
T ss_pred HHHHHHHH
Confidence 88776544
No 36
>PF03971 IDH: Monomeric isocitrate dehydrogenase; InterPro: IPR004436 This family of enzymes catalyses the NADP(+)-dependent oxidative decarboxylation of isocitrate to form 2-oxoglutarate, CO2, and NADPH within the Krebs cycle (1.1.1.42 from EC). Thus this enzyme supplies the cell with a key intermediate in energy metabolism, and precursors for biosynthetic pathways. The activity of this enzyme, which is controlled by phosphorylation, helps regulate carbon flux between the Krebs cycle and the glyoxylate bypass, which is an alternate route that accumulates carbon for biosynthesis when acetate is the sole carbon source for growth []. The phosphorylation state of this enzyme is controlled by isocitrate dehydrogenase kinase/phosphatase. This family has been found in a number of bacterial species including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. The structure of isocitrate dehydrogenase from Azotobacter vinelandii (P16100 from SWISSPROT) has been determined []. This molecule consists of two distinct domains, a small domain and a large domain, with a folding topology similar to that of dimeric isocitrate dehydrogenase from Escherichia coli (P08200 from SWISSPROT). The structure of the large domain repeats a motif observed in the dimeric enzyme. Such a fusional structure by domain duplication enables a single polypeptide chain to form a structure at the catalytic site that is homologous to the dimeric enzyme, the catalytic site of which is located at the interface of two identical subunits.; GO: 0004450 isocitrate dehydrogenase (NADP+) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process; PDB: 1ITW_D 1J1W_A 3MBC_A 2B0T_A.
Probab=77.65 E-value=71 Score=34.49 Aligned_cols=174 Identities=19% Similarity=0.232 Sum_probs=100.0
Q ss_pred cceeeCCEEEEEEEeeHHHHHHHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHhhC--CCceeeeee-Hh
Q 019198 150 EHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKY--PSIKYNEII-VD 226 (344)
Q Consensus 150 e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~ey--p~I~~~~~~-vD 226 (344)
+|.+..|-.+..+-.-..-++-.++.|...||..|-.-|.-.|+.-. | |.-..+-+++.-++| .++++.-|- +|
T Consensus 443 eh~Ve~GDIwRmcq~KD~pI~DWVkLAV~Rar~tg~paiFWLD~~RA--H-Da~lI~kV~~yL~~hdt~gldi~Im~P~~ 519 (735)
T PF03971_consen 443 EHEVEAGDIWRMCQTKDAPIRDWVKLAVNRARATGTPAIFWLDENRA--H-DAELIKKVEKYLKDHDTSGLDIRIMSPVE 519 (735)
T ss_dssp EEEE-TT-EEEEEEE-HHHHHHHHHHHHHHHHHHT--EEEE--TTSH--H-HHHHHHHHHHHHTTS--TT--EEEE-HHH
T ss_pred EeeecCCcchhhhcccCchHHHHHHHHHHHHHhhCCCeEEecCCCCc--c-HHHHHHHHHHHHHhcCCCCCceEeeCHHH
Confidence 34554554455565667778999999999999987666777776432 2 333333334434444 356777774 56
Q ss_pred HHHHHHHhCCCCcc-EEecCCcchhhhhhhhhhhc-C-------------CCccccCcccCC-CcCccCc----C--CCC
Q 019198 227 NCCMQLVSKPEQFD-VMVTPNLYGNLVSNTAAGIA-G-------------GTGVMPGAGNVG-NEKVVEQ----K--KAN 284 (344)
Q Consensus 227 ~~~~~Lv~~P~~fd-VIvt~NlfGDIlSDlaa~l~-G-------------glGl~pSa~nig-APdiaGk----~--iAN 284 (344)
++-..|-+=-.+-| +-||.|..=|+|+||.--|= | |=||.-.+ -=| ||...-| | .=+
T Consensus 520 A~~~sler~r~G~dTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLm~GGGLFETG-AGGSAPKHVqQf~eEnhLRWD 598 (735)
T PF03971_consen 520 ATRFSLERIRAGKDTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLMNGGGLFETG-AGGSAPKHVQQFVEENHLRWD 598 (735)
T ss_dssp HHHHHHHHHHTT---EEEE-HHHHHHHHHHHHHHHHS-STTSEEEEEBTTS-EEEES--SS---HHHHHHHCCCS-----
T ss_pred HHHHHHHHHHcCCCeEEeechHHHhhhcchhhhhhhccchhhhhhhhcccCCceeccC-CCCCccHHHHHHHHcCccccc
Confidence 66555644344555 67999999999999986531 2 12222222 111 7874322 3 557
Q ss_pred hhHHHHHHHHHhhhcCch-------HHHHHHHHHHHHHHHcCcccCCCCC
Q 019198 285 PVALLLSSAMMLRHLQFP-------SFADRLETAVKRVISEEKYRTKDLG 327 (344)
Q Consensus 285 P~a~Ils~ammL~~lg~~-------~~a~~i~~Av~~~l~~g~~~T~Dlg 327 (344)
.+|-.||.+--|+||+.. --|+++.+|+.+.|++++.-.+-.|
T Consensus 599 SLGEFlALa~Sle~l~~~~~n~ka~vLa~tLd~At~~~L~n~ksPsRkvg 648 (735)
T PF03971_consen 599 SLGEFLALAVSLEHLAQKTGNPKAKVLADTLDAATGKFLENNKSPSRKVG 648 (735)
T ss_dssp THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHTT-S--SSTT
T ss_pred chhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCCCCccCC
Confidence 899999999999999853 3488999999999999863333333
No 37
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. This model represents PdxA, an NAD+-dependent 4-hydroxythreonine 4-phosphate dehydrogenase (EC 1.1.1.262) active in pyridoxal phosphate biosynthesis.
Probab=76.50 E-value=2.2 Score=42.24 Aligned_cols=121 Identities=14% Similarity=0.139 Sum_probs=65.6
Q ss_pred EeeHHHHHHHHHHHHHHHHhc-C--CCceEE-EeccchhhhchHHH-HHHHH-------HHHhhCCCceee-eeeHhHHH
Q 019198 163 VITKFCSERIAKYAFEYAYLN-Y--RKKVTA-VHKANIMKLADGLF-LESCR-------EVATKYPSIKYN-EIIVDNCC 229 (344)
Q Consensus 163 ~~Tr~~~eRiar~AFe~A~~r-~--~~~Vt~-v~KaNvlk~tdglf-~~~~~-------eva~eyp~I~~~-~~~vD~~~ 229 (344)
.+|.+.+.+-++.+.+.-++. | +.|+-+ .=..+.=. .|+| +|..+ +..++ ++.++ -.-.|++-
T Consensus 170 ~it~~~i~~~i~~~~~~l~~~~gi~~PrIaV~gLNPHAGE--~G~~G~EE~~iI~PAI~~~~~~--G~~v~GP~paDt~F 245 (320)
T TIGR00557 170 ALTPELLVEKLRILHADLRRDFGIARPRIAVAGLNPHAGE--GGHLGREEIDIIIPALEALRAE--GIDLIGPLPADTLF 245 (320)
T ss_pred HhCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCCCC--CCCCcHHHHHHHHHHHHHHHHC--CCcccCCCCchhhc
Confidence 478888888888888777642 2 223322 22222221 3555 33222 22222 23222 33445555
Q ss_pred HHHHhCCCCccEEecCCcchhhhhhhhhhhcCCCccccCcccC-------------C-CcCccCcCCCChhHHHHHHHHH
Q 019198 230 MQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGNV-------------G-NEKVVEQKKANPVALLLSSAMM 295 (344)
Q Consensus 230 ~~Lv~~P~~fdVIvt~NlfGDIlSDlaa~l~GglGl~pSa~ni-------------g-APdiaGk~iANP~a~Ils~amm 295 (344)
.+-.+ ++||++|+. |= |.+--=.-.++.--+. |+ | |-||||||+|||.+|+-|.-+.
T Consensus 246 ~~~~~--~~~D~vvaM--YH----DQGliP~K~l~F~~gV-NvTlGLPiiRTS~DHGTAfDIAGkg~A~~~S~~~Ai~~A 316 (320)
T TIGR00557 246 HPAAL--AKYDAVLAM--YH----DQGLIPLKYLGFDEGV-NVTLGLPFIRTSPDHGTAFDIAGKGKADPGSLIAAIKLA 316 (320)
T ss_pred ccccc--cCCCEEEEC--cc----cccchhheecccCcce-EEecCCCeeEeCCCCcchhhhhcCCCCCHHHHHHHHHHH
Confidence 44222 579988873 32 3332223333333334 33 3 8899999999999999877664
Q ss_pred h
Q 019198 296 L 296 (344)
Q Consensus 296 L 296 (344)
.
T Consensus 317 ~ 317 (320)
T TIGR00557 317 I 317 (320)
T ss_pred H
Confidence 4
No 38
>PF04166 PdxA: Pyridoxal phosphate biosynthetic protein PdxA; InterPro: IPR005255 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents 4-hydroxythreonine-4-phosphate dehydrogenase (PdxA, 1.1.1.262 from EC). PdxA takes part in vitamin B6 biosynthesis, forming pyridoxine 5'-phosphate from 4-(phosphohydroxy)-L-threonine and 1-deoxy-D-xylulose-5-phosphate.; GO: 0050570 4-hydroxythreonine-4-phosphate dehydrogenase activity, 0051287 NAD binding, 0008615 pyridoxine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1YXO_A 1PS6_A 1PS7_C 1PTM_B 1R8K_B 2HI1_A 3LXY_A 3TSN_B.
Probab=70.39 E-value=3 Score=40.87 Aligned_cols=121 Identities=17% Similarity=0.138 Sum_probs=60.0
Q ss_pred EeeHHHHHHHHHHHHHHHHh-cC--CCceEEEeccchhhhc--hHHHH-H----HHHHHHh-hCCCceeeee-eHhHHHH
Q 019198 163 VITKFCSERIAKYAFEYAYL-NY--RKKVTAVHKANIMKLA--DGLFL-E----SCREVAT-KYPSIKYNEI-IVDNCCM 230 (344)
Q Consensus 163 ~~Tr~~~eRiar~AFe~A~~-r~--~~~Vt~v~KaNvlk~t--dglf~-~----~~~eva~-eyp~I~~~~~-~vD~~~~ 230 (344)
.+|.+.+.+.++...+.-++ -| +.|+-+.- -| +|. .|+|= | +.-.+.+ .-.++.+.-= -.|++-.
T Consensus 151 ~it~~~i~~~i~~~~~~l~~~~gi~~PrIaV~g-LN--PHaGe~G~~G~EE~~~I~PAI~~~~~~gi~v~GP~paDt~F~ 227 (298)
T PF04166_consen 151 LITKERILEKIRLLHKSLKRDFGIENPRIAVAG-LN--PHAGEGGLFGREEIEIIIPAIEEARAEGIDVFGPYPADTVFG 227 (298)
T ss_dssp H--HHHHHHHHHHHHHHHHHTTT-SS-EEEEE--SS--GGGGTTTTTBSHHHHTHHHHHHHHHHTTHEEEEEE-HHHHTS
T ss_pred hcCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEE-eC--CCCCCCCCCcHhHHHHHHHHHHHHHhCCCceECCCccHHhhh
Confidence 57888888888777666555 22 22333321 12 222 34552 2 2222221 1246665543 4466654
Q ss_pred HHHhCCCCccEEecCCcchhhhhhhhhhhcCCCccccCcc------------cCC-CcCccCcCCCChhHHHHHHHH
Q 019198 231 QLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAG------------NVG-NEKVVEQKKANPVALLLSSAM 294 (344)
Q Consensus 231 ~Lv~~P~~fdVIvt~NlfGDIlSDlaa~l~GglGl~pSa~------------nig-APdiaGk~iANP~a~Ils~am 294 (344)
+- .-++||++|+ ||=| .+--=.--++.--+.+ .-| |-||||||+|||.+|+.|.-+
T Consensus 228 ~~--~~~~fD~vva--MYHD----QGlip~K~l~f~~gVnvTlGLP~iRTS~DHGTAfDIAGkg~A~~~s~~~Ai~~ 296 (298)
T PF04166_consen 228 KA--NRGKFDAVVA--MYHD----QGLIPFKLLGFDEGVNVTLGLPIIRTSPDHGTAFDIAGKGIADPSSMIEAIKL 296 (298)
T ss_dssp HH--HHTT-SEEEE--SSHH----HHHHHHHHHCTTTSEEEEESSSSEEEEESS-S-CCGTTTTTS-THHHHHHHHH
T ss_pred cc--hhccCCEEEE--eecc----cCccceeecccccceEEecCCCeeeecCCCCchhhhhCCCCCChHHHHHHHHH
Confidence 43 3468999998 3433 3322222222222330 333 999999999999999988755
No 39
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=66.49 E-value=19 Score=28.34 Aligned_cols=62 Identities=23% Similarity=0.209 Sum_probs=38.8
Q ss_pred HHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHH-hh--CCCceeeeeeHhHHHHHHHhCCCCccEEecCC
Q 019198 174 KYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVA-TK--YPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPN 246 (344)
Q Consensus 174 r~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva-~e--yp~I~~~~~~vD~~~~~Lv~~P~~fdVIvt~N 246 (344)
+.++.+|++++..+|+.++.+- -+.+.+++-+ +. -+.|.+.+ -|. ......+++||+|++.+
T Consensus 14 ~~~~~l~~~~~~~~v~gvD~s~-------~~~~~a~~~~~~~~~~~~i~~~~--~d~--~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 14 RLSIALARLFPGARVVGVDISP-------EMLEIARERAAEEGLSDRITFVQ--GDA--EFDPDFLEPFDLVICSG 78 (112)
T ss_dssp HHHHHHHHHHTTSEEEEEESSH-------HHHHHHHHHHHHTTTTTTEEEEE--SCC--HGGTTTSSCEEEEEECS
T ss_pred HHHHHHHhcCCCCEEEEEeCCH-------HHHHHHHHHHHhcCCCCCeEEEE--Ccc--ccCcccCCCCCEEEECC
Confidence 4567778755567899999532 2334444433 22 24455444 333 45667788999999999
No 40
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=66.45 E-value=4.3 Score=40.27 Aligned_cols=24 Identities=13% Similarity=0.212 Sum_probs=20.3
Q ss_pred CcCccCcCCCChhHHHHHHHHHhh
Q 019198 274 NEKVVEQKKANPVALLLSSAMMLR 297 (344)
Q Consensus 274 APdiaGk~iANP~a~Ils~ammL~ 297 (344)
|-||||||||||.+++-|..+.-+
T Consensus 301 AfDiAgkGiA~~~S~~~Ai~lA~~ 324 (332)
T COG1995 301 AFDIAGKGIADPGSLIAAIKLAAK 324 (332)
T ss_pred hhhhhcCCcCCchHHHHHHHHHHH
Confidence 999999999999999877765443
No 41
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=64.63 E-value=5.1 Score=39.86 Aligned_cols=124 Identities=10% Similarity=0.063 Sum_probs=69.4
Q ss_pred EeeHHHHHHHHHHHHHHHHhc-C--CCceEEE-eccchhhhchHHH-HHHHHHHH----h-hCCCcee-eeeeHhHHHHH
Q 019198 163 VITKFCSERIAKYAFEYAYLN-Y--RKKVTAV-HKANIMKLADGLF-LESCREVA----T-KYPSIKY-NEIIVDNCCMQ 231 (344)
Q Consensus 163 ~~Tr~~~eRiar~AFe~A~~r-~--~~~Vt~v-~KaNvlk~tdglf-~~~~~eva----~-eyp~I~~-~~~~vD~~~~~ 231 (344)
.+|.+.+.+.++...+.-++. | +-|+-+. =..+.=. .|+| +|..+.+. + .-.++.+ --+-.|++..+
T Consensus 173 ~it~e~i~~~i~l~~~~l~~~~gi~~PrIaV~GLNPHAGE--~G~~G~EE~~iI~PAi~~~~~~Gi~v~GP~paDt~F~~ 250 (329)
T PRK01909 173 ALTIDGLVETLAIIDRDLRRDFGLAAPRILVTGLNPHAGE--NGYLGREEIDVIEPALARARAAGIDARGPYPADTLFQP 250 (329)
T ss_pred HhCHHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCCCCCC--CCCCcHHHHHHHHHHHHHHHHCCCCccCCCCchhhccc
Confidence 578888988888888866632 2 2233322 1222221 4566 44333221 1 1123332 24455666655
Q ss_pred HHhCCCCccEEecCCcchhhhhhhhhhhcCCCccccCcccC-------------C-CcCccCcCCCChhHHHHHHHHHhh
Q 019198 232 LVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGNV-------------G-NEKVVEQKKANPVALLLSSAMMLR 297 (344)
Q Consensus 232 Lv~~P~~fdVIvt~NlfGDIlSDlaa~l~GglGl~pSa~ni-------------g-APdiaGk~iANP~a~Ils~ammL~ 297 (344)
-.+ .+||++|+. |= |.+---.-.++.--+. |+ | |-||||||+|||.+|+-|.-+..+
T Consensus 251 ~~~--~~~D~vvaM--YH----DQGliP~K~l~F~~gV-NvTlGLP~iRTSvDHGTAfDIAGkg~A~~~S~~~Ai~lA~~ 321 (329)
T PRK01909 251 RYL--EDADCVLAM--FH----DQGLPVLKYATFGEGI-NVTLGLPIIRTSVDHGTALDLAGTGRADPGSMIAAIDTAVT 321 (329)
T ss_pred ccc--cCCCEEEEc--cc----cccchhheecccCcce-EEecCCCeeEeCCCCcchhhhhcCCCCCHHHHHHHHHHHHH
Confidence 444 479988873 33 3333323334444444 43 3 889999999999999988776544
No 42
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=63.76 E-value=5.4 Score=39.80 Aligned_cols=123 Identities=11% Similarity=0.068 Sum_probs=66.3
Q ss_pred EeeHHHHHHHHHHHHHHHHh-cCC--CceEEE-eccchhhhchHHH-HHHHHHH-------HhhCCCcee-eeeeHhHHH
Q 019198 163 VITKFCSERIAKYAFEYAYL-NYR--KKVTAV-HKANIMKLADGLF-LESCREV-------ATKYPSIKY-NEIIVDNCC 229 (344)
Q Consensus 163 ~~Tr~~~eRiar~AFe~A~~-r~~--~~Vt~v-~KaNvlk~tdglf-~~~~~ev-------a~eyp~I~~-~~~~vD~~~ 229 (344)
.+|.+.+.+.++.+.+.-++ -|. -|+-+. =..+.=. .|+| +|..+.+ .++ ++.+ --.-.|++-
T Consensus 182 ~it~e~i~~~i~l~~~~l~~~~gi~~PrIaV~GLNPHAGE--~G~~G~EE~~iI~PAI~~~~~~--Gi~v~GP~paDt~F 257 (336)
T PRK05312 182 ALTPELIVATARITAADLRRRFGIASPRLAVAGLNPHAGE--GGALGREDIDIIAPAIEQLRAE--GIDARGPLPADTMF 257 (336)
T ss_pred HhCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeeCCCCCC--CCCCcHHHHHHHHHHHHHHHHC--CCCccCCCCchhhc
Confidence 57888888888888876663 231 233322 1222221 3555 3332222 222 3322 233446555
Q ss_pred HHHHhCCCCccEEecCCcchhhhhhhhhhhcCCCccccCcc------------cCC-CcCccCcCCCChhHHHHHHHHHh
Q 019198 230 MQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAG------------NVG-NEKVVEQKKANPVALLLSSAMML 296 (344)
Q Consensus 230 ~~Lv~~P~~fdVIvt~NlfGDIlSDlaa~l~GglGl~pSa~------------nig-APdiaGk~iANP~a~Ils~ammL 296 (344)
.+-.+ .+||++|+. |= |.+---.-.++.--+.+ .-| |-||||||+|||.+|+-|.-+..
T Consensus 258 ~~~~~--~~~D~vvaM--YH----DQGliP~K~l~F~~gVNvTlGLP~iRTSvDHGTAfDIAGkg~A~~~S~~~Ai~lA~ 329 (336)
T PRK05312 258 HAAAR--ATYDAAICM--YH----DQALIPIKTLDFDGGVNVTLGLPFIRTSPDHGTAFDIAGKGIARPDSLIAALRLAA 329 (336)
T ss_pred ccccc--cCCCEEEEc--cc----ccCChhheecccCcceEEecCCCeeEeCCCCcchhhhhcCCCCCHHHHHHHHHHHH
Confidence 44322 579988873 32 23322223333333330 333 88999999999999998877654
Q ss_pred h
Q 019198 297 R 297 (344)
Q Consensus 297 ~ 297 (344)
+
T Consensus 330 ~ 330 (336)
T PRK05312 330 Q 330 (336)
T ss_pred H
Confidence 4
No 43
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=63.56 E-value=1e+02 Score=33.29 Aligned_cols=152 Identities=18% Similarity=0.200 Sum_probs=98.7
Q ss_pred eHHHHHHHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHhhC--CCceeeeee-HhHHHHHHHhCCCCcc-
Q 019198 165 TKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKY--PSIKYNEII-VDNCCMQLVSKPEQFD- 240 (344)
Q Consensus 165 Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~ey--p~I~~~~~~-vD~~~~~Lv~~P~~fd- 240 (344)
-..-++-.++.|...||..|-.-|.-.|+.-. | |.-..+-++..-++| .++++.-|- ++++-..|=+=-.+-|
T Consensus 462 KD~pI~DWVkLAV~Rar~sg~pavFWLD~~Ra--H-Da~lI~kV~~yL~~hdt~gldi~Im~p~~A~~~slerir~G~dT 538 (741)
T TIGR00178 462 KDAPIQDWVKLAVTRARATGTPAVFWLDPARA--H-DAQLIKKVETYLKDHDTEGLDIQILSPVEATRFSLARIRRGEDT 538 (741)
T ss_pred cCchHHHHHHHHHHHHHhcCCCeEEEeCCCch--h-HHHHHHHHHHHHHhcCCCCCceEeeCHHHHHHHHHHHHHcCCCe
Confidence 34568889999999999987666776665432 1 221222223333333 356677774 5555555544334455
Q ss_pred EEecCCcchhhhhhhhhhh--------------cCCCccccCcccCC-CcCccCc----C--CCChhHHHHHHHHHhhhc
Q 019198 241 VMVTPNLYGNLVSNTAAGI--------------AGGTGVMPGAGNVG-NEKVVEQ----K--KANPVALLLSSAMMLRHL 299 (344)
Q Consensus 241 VIvt~NlfGDIlSDlaa~l--------------~GglGl~pSa~nig-APdiaGk----~--iANP~a~Ils~ammL~~l 299 (344)
+-||.|..=|+|+||.--| +-|=||.-.+ -=| ||...-| | .=+.+|-.|+.+--|+||
T Consensus 539 ISVTGNVLRDYLTDLFPILElGTSAKMLSIVPLm~GGGLFETG-AGGSAPKHVqQf~eEnhLRWDSLGEFlALa~Sle~l 617 (741)
T TIGR00178 539 ISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLMAGGGLFETG-AGGSAPKHVQQFLEENHLRWDSLGEFLALAASLEHL 617 (741)
T ss_pred EEEechhHHhhhcchhhhhhhccchhhhhhhhcccCCceecCC-CCCCccHHHHHHHHcCcccccchhhHHHHHHHHHHH
Confidence 6699999999999998543 2222333222 212 8875432 2 557789999999999999
Q ss_pred Cch-------HHHHHHHHHHHHHHHcCc
Q 019198 300 QFP-------SFADRLETAVKRVISEEK 320 (344)
Q Consensus 300 g~~-------~~a~~i~~Av~~~l~~g~ 320 (344)
+.. --|+++.+|+.+.|++++
T Consensus 618 a~~~~n~ka~vLa~tLd~At~k~L~n~k 645 (741)
T TIGR00178 618 GNATGNPKALVLADTLDAATGKLLDNNK 645 (741)
T ss_pred HHhcCChHHHHHHHHHHHHHHHHHhCCC
Confidence 863 238889999999999886
No 44
>cd07186 CofD_like LPPG:FO 2-phospho-L-lactate transferase; important in F420 biosynthesis. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis.
Probab=62.03 E-value=69 Score=31.61 Aligned_cols=105 Identities=18% Similarity=0.197 Sum_probs=57.8
Q ss_pred CCcHHHHHHHHhcCeEEEccccCCC---CC--CCCchhHHHHhhcCcEEEEEEeecC---C----------CCC------
Q 019198 72 RVPQQVLDSIRKNKVCLKGGLKTPV---GG--GVSSLNVQLRKELDLYAALVNCFNL---P----------GLP------ 127 (344)
Q Consensus 72 ~lp~~~~~~~~~~da~l~G~~~~p~---~~--~~~s~~~~LR~~ldlyanvRP~~~~---p----------g~~------ 127 (344)
.-.++++++++++|.+++||- +|. .+ ........||+.=---+.|-|+..= . |++
T Consensus 172 ~~~p~vl~AI~~AD~IVlGPg-sp~TSI~P~LlVpgI~eAL~~s~A~vV~Vspiig~~~v~Gpa~~~m~a~G~~~s~~gv 250 (303)
T cd07186 172 RPAPEVLEAIEDADLVIIGPS-NPVTSIGPILALPGIREALRDKKAPVVAVSPIIGGKAVSGPAAKLMAALGFEPSAAGV 250 (303)
T ss_pred CCCHHHHHHHHhCCEEEECCC-ccHHHhhhhccchhHHHHHHhCCCCEEEEcCCCCCCCCCchHHHHHHHcCCCCcHHHH
Confidence 457899999999999999993 331 11 1122334566664455556665531 1 111
Q ss_pred -CCccc-ccEEEEecCCceeeecccceeeCCEEEEEEEeeHHHHHHHHHHHH
Q 019198 128 -TRHQN-VDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAF 177 (344)
Q Consensus 128 -~~~~~-vDivIvREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AF 177 (344)
..|++ +|..++-+--...-..++.....-.+.++.--+.+..+|++|.+.
T Consensus 251 a~~Y~~~~d~~vid~~D~~~~~~~~~~g~~v~~~~t~m~~~~~~~~la~~~l 302 (303)
T cd07186 251 AEIYGDLLDGFVIDEADRALADAIEALGIEVSRTDTLMTDEEDKIRLAREVL 302 (303)
T ss_pred HHHhhccccEEEEcccccccchhcccCCceeEecCccCCCHHHHHHHHHHHh
Confidence 11344 588777654322211111110011345666677888889988765
No 45
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=60.57 E-value=29 Score=31.26 Aligned_cols=67 Identities=18% Similarity=0.145 Sum_probs=39.2
Q ss_pred HHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeeeHhHHHHHHHhCCCCccEEecCC
Q 019198 175 YAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPN 246 (344)
Q Consensus 175 ~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~vD~~~~~Lv~~P~~fdVIvt~N 246 (344)
.++| |..||-++|++|+|..-. ....++-.+.+..+- .+++-..-+-....++......||+|.+.=
T Consensus 56 lGlE-ALSRGA~~v~fVE~~~~a---~~~i~~N~~~l~~~~-~~~v~~~d~~~~l~~~~~~~~~fDiIflDP 122 (183)
T PF03602_consen 56 LGLE-ALSRGAKSVVFVEKNRKA---IKIIKKNLEKLGLED-KIRVIKGDAFKFLLKLAKKGEKFDIIFLDP 122 (183)
T ss_dssp HHHH-HHHTT-SEEEEEES-HHH---HHHHHHHHHHHT-GG-GEEEEESSHHHHHHHHHHCTS-EEEEEE--
T ss_pred cHHH-HHhcCCCeEEEEECCHHH---HHHHHHHHHHhCCCc-ceeeeccCHHHHHHhhcccCCCceEEEECC
Confidence 4666 788889999999987643 345566555554221 234434433345566777889999887643
No 46
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=59.82 E-value=7.1 Score=38.51 Aligned_cols=122 Identities=11% Similarity=0.069 Sum_probs=64.6
Q ss_pred EeeHHHHHHHHHHHHHHHHhcCCCceEEEeccchhhhchHHH-HHH------HHHHHhhCCCceee--eeeHhHHHHHHH
Q 019198 163 VITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLF-LES------CREVATKYPSIKYN--EIIVDNCCMQLV 233 (344)
Q Consensus 163 ~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf-~~~------~~eva~eyp~I~~~--~~~vD~~~~~Lv 233 (344)
.+|.+.+.+-++...+.-+ .+|=-|.-.. .+.=. .|+| +|. .++..+. .+++++ -.-.|++-.+-.
T Consensus 158 ~it~~~i~~~i~~~~~~l~-~PrIaV~gLN-PHAGE--~G~~G~EE~iI~PAi~~~~~~-~g~~~~~GP~paDt~F~~~~ 232 (307)
T PRK03946 158 LIKVKKLVKFLLDFYKSTK-FKKIGVLGLN-PHAGD--NGVIGGEEEEIKKAIKKANQF-LGFEIFFGPLVPDSAFTPNK 232 (307)
T ss_pred HhCHHHHHHHHHHHHHHhc-CCCEEEEeeC-CCCCC--CCCCCcchHHHHHHHHHHHHh-cCCCcccCCcCchhhccccc
Confidence 5677777777766665433 3221222222 22211 2445 222 2222211 144444 566677765543
Q ss_pred hCCCCccEEecCCcchhhhhhhhhhhcCCCccccCcc------------cCC-CcCccCcC-CCChhHHHHHHHHHhh
Q 019198 234 SKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAG------------NVG-NEKVVEQK-KANPVALLLSSAMMLR 297 (344)
Q Consensus 234 ~~P~~fdVIvt~NlfGDIlSDlaa~l~GglGl~pSa~------------nig-APdiaGk~-iANP~a~Ils~ammL~ 297 (344)
+ .+||++|+. |=| .+--=.-.++.--+.+ +-| |-|||||| +|||.+|+-|.-+..+
T Consensus 233 ~--~~~D~vlaM--YHD----QGlip~K~l~F~~gVnvTlGLP~iRTSpDHGTAfDIAGkg~~A~~~S~~~Ai~lA~~ 302 (307)
T PRK03946 233 R--KKFNYYVAM--YHD----QGLAPLKALYFDESINVSLNLPILRTSVDHGTAFDIAYKNAKANTKSYLNAIKYAIN 302 (307)
T ss_pred c--cCCCEEEEC--ccc----cCchhheeeccCcceEEecCCCEeEecCCCCchhhhcCCCCcCCHHHHHHHHHHHHH
Confidence 3 589999884 332 3222222333333330 334 88999999 9999999988766444
No 47
>PTZ00435 isocitrate dehydrogenase; Provisional
Probab=59.40 E-value=15 Score=37.77 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=20.5
Q ss_pred cccEEEEecCCceeeecccceeeC
Q 019198 132 NVDIVVIRENTEGEYSGLEHEVVP 155 (344)
Q Consensus 132 ~vDivIvREnteG~Y~g~e~~~~~ 155 (344)
..+++++||||||.|.+.++....
T Consensus 127 ~~~i~i~Ren~e~~y~~id~vi~r 150 (413)
T PTZ00435 127 KKPIVIGRHAFGDQYKATDFVVDG 150 (413)
T ss_pred CCCeeeeccccCCCcCceEEEEec
Confidence 478999999999999999876543
No 48
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=56.01 E-value=85 Score=28.53 Aligned_cols=62 Identities=15% Similarity=0.127 Sum_probs=34.0
Q ss_pred CCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeee-----Hh---HHHHHHHhCCCCccEEecCC
Q 019198 184 YRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEII-----VD---NCCMQLVSKPEQFDVMVTPN 246 (344)
Q Consensus 184 ~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~-----vD---~~~~~Lv~~P~~fdVIvt~N 246 (344)
|.++|-++.=.+-. .+.....+-+++..+++|++++.... .+ ..+.+++++...+|.|++.|
T Consensus 121 g~~~i~~l~~~~~~-~~~~~R~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~aI~~~~ 190 (270)
T cd06308 121 GKGNILEIWGLEGS-SPAIERHDGFKEALSKYPKIKIVAQQDGDWLKEKAEEKMEELLQANPDIDLVYAHN 190 (270)
T ss_pred CCceEEEEECCCCC-chHHHHHHHHHHHHHHCCCCEEEEecCCCccHHHHHHHHHHHHHhCCCCcEEEeCC
Confidence 66788877411111 12223345556655677777643321 11 34556666555799998864
No 49
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=55.09 E-value=56 Score=31.03 Aligned_cols=62 Identities=8% Similarity=0.098 Sum_probs=44.1
Q ss_pred ceEEEEEcCCCCcH-HHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHHHhcCeEEEcc
Q 019198 29 PRAVTLIPGDGIGP-LVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRKNKVCLKGG 91 (344)
Q Consensus 29 ~~~I~vi~GDGIGp-EV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~~~~da~l~G~ 91 (344)
..+|++||-.+-.| +..+...+.++.+|+. +.+..++....+.-.++.++.++++|+++++-
T Consensus 28 ~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~-~v~~l~i~~r~~a~~~~~~~~l~~ad~I~~~G 90 (250)
T TIGR02069 28 DAIIVIITSASEEPREVGERYITIFSRLGVK-EVKILDVREREDASDENAIALLSNATGIFFTG 90 (250)
T ss_pred CceEEEEeCCCCChHHHHHHHHHHHHHcCCc-eeEEEecCChHHccCHHHHHHHhhCCEEEEeC
Confidence 46999999655444 6788888899998874 23344443222445677889999999999865
No 50
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=52.58 E-value=1.1e+02 Score=23.72 Aligned_cols=80 Identities=13% Similarity=0.103 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEeccchhh--------hchHHHHHHHHHHHhh--CCCceeeeeeHhHH-HHHHH-
Q 019198 166 KFCSERIAKYAFEYAYLNYRKKVTAVHKANIMK--------LADGLFLESCREVATK--YPSIKYNEIIVDNC-CMQLV- 233 (344)
Q Consensus 166 r~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvlk--------~tdglf~~~~~eva~e--yp~I~~~~~~vD~~-~~~Lv- 233 (344)
...+.+++++|.++|..+ ..+++++|=..-.. ....-.++...++.+. ++++.+...+++.- ...|+
T Consensus 9 ~~~~~~~l~~a~~~a~~~-~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 87 (130)
T cd00293 9 SEESERALRWAARLARRL-GAELVLLHVVDPPPSSAAELAELLEEEARALLEALREALAEAGVKVETVVLEGDPAEAILE 87 (130)
T ss_pred CHHHHHHHHHHHHHHHhc-CCEEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEecCCCHHHHHH
Confidence 567889999999999997 57888876321110 0112234444444432 56777766654321 22332
Q ss_pred -hCCCCccEEecCC
Q 019198 234 -SKPEQFDVMVTPN 246 (344)
Q Consensus 234 -~~P~~fdVIvt~N 246 (344)
.+-.++|++|...
T Consensus 88 ~~~~~~~dlvvig~ 101 (130)
T cd00293 88 AAEELGADLIVMGS 101 (130)
T ss_pred HHHHcCCCEEEEcC
Confidence 2456789888764
No 51
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=46.86 E-value=1.5e+02 Score=26.95 Aligned_cols=72 Identities=15% Similarity=0.104 Sum_probs=37.8
Q ss_pred HHHHHHHHHhc--CCCceEEEe-ccchhhhchHHHHHHHHHHHhhCCCceeeeee-----H---hHHHHHHHhCCCCccE
Q 019198 173 AKYAFEYAYLN--YRKKVTAVH-KANIMKLADGLFLESCREVATKYPSIKYNEII-----V---DNCCMQLVSKPEQFDV 241 (344)
Q Consensus 173 ar~AFe~A~~r--~~~~Vt~v~-KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~-----v---D~~~~~Lv~~P~~fdV 241 (344)
.+.+.++..++ |++++.++. ..+.. +.....+-+.+..+++|++++.... . -....++++++.++|.
T Consensus 108 g~~~~~~l~~~~~g~~~i~~l~~~~~~~--~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a 185 (275)
T cd06320 108 GVRGAEWIIDKLAEGGKVAIIEGKAGAF--AAEQRTEGFTEAIKKASGIEVVASQPADWDREKAYDVATTILQRNPDLKA 185 (275)
T ss_pred HHHHHHHHHHHhCCCceEEEEeCCCCCc--cHHHHHHHHHHHHhhCCCcEEEEecCCCccHHHHHHHHHHHHHhCCCccE
Confidence 33444444443 566777663 22322 1122334455555556676643211 1 1244567776668999
Q ss_pred EecCC
Q 019198 242 MVTPN 246 (344)
Q Consensus 242 Ivt~N 246 (344)
|++.|
T Consensus 186 i~~~~ 190 (275)
T cd06320 186 IYCNN 190 (275)
T ss_pred EEECC
Confidence 99986
No 52
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=46.40 E-value=1.7e+02 Score=26.32 Aligned_cols=72 Identities=14% Similarity=0.102 Sum_probs=38.6
Q ss_pred HHHHHHHhc--CCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeee----HhH---HHHHHHhCCCCccEEecC
Q 019198 175 YAFEYAYLN--YRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEII----VDN---CCMQLVSKPEQFDVMVTP 245 (344)
Q Consensus 175 ~AFe~A~~r--~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~----vD~---~~~~Lv~~P~~fdVIvt~ 245 (344)
.+.++..++ |.+++.++.-.. .. +.....+-+++..+++|++++.... .+. .+.++++....+++|++.
T Consensus 109 ~~~~~l~~~~~g~~~i~~i~~~~-~~-~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 186 (267)
T cd06322 109 LAGELAAKVLNGKGQVAIIDYPT-VQ-SVVDRVRGFKEALADYPNIKIVAVQPGITRAEALTAAQNILQANPDLDGIFAF 186 (267)
T ss_pred HHHHHHHHHhCCCceEEEEecCC-Cc-cHHHHHHHHHHHHHhCCCcEEEEecCCCChHHHHHHHHHHHHhCCCCCEEEEc
Confidence 344444433 567888876322 22 2234445556655667777643221 122 244566555578999998
Q ss_pred Ccc
Q 019198 246 NLY 248 (344)
Q Consensus 246 Nlf 248 (344)
|-.
T Consensus 187 ~d~ 189 (267)
T cd06322 187 GDD 189 (267)
T ss_pred CCc
Confidence 743
No 53
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=45.78 E-value=86 Score=29.14 Aligned_cols=65 Identities=11% Similarity=0.088 Sum_probs=36.1
Q ss_pred CCceEEEEEcCC---CCcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHH--HhcCeEEEccccC
Q 019198 27 GSPRAVTLIPGD---GIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSI--RKNKVCLKGGLKT 94 (344)
Q Consensus 27 ~~~~~I~vi~GD---GIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~--~~~da~l~G~~~~ 94 (344)
++..+|+++--+ ---.++.....+.++..+..+.+...+. ......+.++.+ ++.|+++.-+...
T Consensus 33 ~~~~~ig~v~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~---~~~~~~~~i~~l~~~~vDgiIi~~~~~ 102 (309)
T PRK11041 33 NESRTILVIVPDICDPFFSEIIRGIEVTAAEHGYLVLIGDCAH---QNQQEKTFVNLIITKQIDGMLLLGSRL 102 (309)
T ss_pred CCCcEEEEEeCCCcCccHHHHHHHHHHHHHHCCCEEEEEeCCC---ChHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 345788887433 3556677777777777776665432211 111122333332 4688888866543
No 54
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=45.15 E-value=1.5e+02 Score=26.59 Aligned_cols=78 Identities=17% Similarity=0.123 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeee-----eeHh---HHHHHHHhCCC
Q 019198 166 KFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNE-----IIVD---NCCMQLVSKPE 237 (344)
Q Consensus 166 r~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~-----~~vD---~~~~~Lv~~P~ 237 (344)
+...+..+++..+.. .|.+++.++.-.+-.. +...+.+-+.+..++|+++++.. .-.+ ..+.++.+++.
T Consensus 104 ~~~~~~~~~~l~~~~--~g~~~i~~l~~~~~~~-~~~~r~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 180 (268)
T cd06323 104 VAGGKMAAEYLVKLL--GGKGKVVELQGIPGAS-AARERGKGFHEVVDKYPGLKVVASQPADFDRAKGLNVMENILQAHP 180 (268)
T ss_pred HHHHHHHHHHHHHHh--CCCceEEEEeCCCCCc-cHHHHHHHHHHHHHhCCCcEEEecccCCCCHHHHHHHHHHHHHHCC
Confidence 333444555444332 1457777774221111 22344455556555666665431 1111 23556776666
Q ss_pred CccEEecCC
Q 019198 238 QFDVMVTPN 246 (344)
Q Consensus 238 ~fdVIvt~N 246 (344)
++|.|+|.|
T Consensus 181 ~~~ai~~~~ 189 (268)
T cd06323 181 DIKGVFAQN 189 (268)
T ss_pred CcCEEEEcC
Confidence 799888876
No 55
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=43.82 E-value=92 Score=33.47 Aligned_cols=110 Identities=20% Similarity=0.176 Sum_probs=70.5
Q ss_pred EEEEEEEeeHHHHHH-HHHHHHHHHHhc--CCC--------ceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeee--
Q 019198 157 VVESLKVITKFCSER-IAKYAFEYAYLN--YRK--------KVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEI-- 223 (344)
Q Consensus 157 va~~~~~~Tr~~~eR-iar~AFe~A~~r--~~~--------~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~-- 223 (344)
++..+-..+-.+.|| +.|.|.+.|+.. ++| +|+++-.+=--+....+|.+...+ +.-|..+++.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 241 (578)
T PRK15490 164 LALCTGSLGSGGAERQISRLAIEIARKYRQKGKIGGLKVEEPVELIIRSLTPELRQDFFLKEVLE--EQVEVLEIAKITG 241 (578)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHHHHHhcccccccccccceeEEEeecCcccCcchhHHHHHh--cCCceEEeeccch
Confidence 455555556666655 888999998753 233 688887766666666788887777 22333333322
Q ss_pred -eHhHH----------------------H--HHHHhCCCCccEEecCCcchhhhhhhhhhhcCCCccccCc
Q 019198 224 -IVDNC----------------------C--MQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGA 269 (344)
Q Consensus 224 -~vD~~----------------------~--~~Lv~~P~~fdVIvt~NlfGDIlSDlaa~l~GglGl~pSa 269 (344)
+.|.+ . +.|+ +-.++|||-|-|....+++=++|-++|-.-+..+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i-r~~rpDIVHt~~~~a~l~g~laA~lagvpviv~~~ 311 (578)
T PRK15490 242 NLFDDATIESPELRLLLSHLPPVCKYGIKHLVPHL-CERKLDYLSVWQDGACLMIALAALIAGVPRIQLGL 311 (578)
T ss_pred hhhhhccccchHHHHHHhcCChHHHHHHHHHHHHH-HHcCCCEEEEcCcccHHHHHHHHHhcCCCEEEEee
Confidence 23333 1 2222 33688999999998889999999888766554443
No 56
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=42.76 E-value=1.3e+02 Score=27.12 Aligned_cols=50 Identities=8% Similarity=0.033 Sum_probs=27.1
Q ss_pred CcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHH--HhcCeEEEccc
Q 019198 40 IGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSI--RKNKVCLKGGL 92 (344)
Q Consensus 40 IGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~--~~~da~l~G~~ 92 (344)
--.+++..+.+.++..|..+.+...+. ......+.++.+ ++.|+++.-+.
T Consensus 13 ~~~~~~~g~~~~a~~~g~~~~~~~~~~---~~~~~~~~i~~~~~~~vdgii~~~~ 64 (268)
T cd06270 13 FFGPLLSGVESVARKAGKHLIITAGHH---SAEKEREAIEFLLERRCDALILHSK 64 (268)
T ss_pred chHHHHHHHHHHHHHCCCEEEEEeCCC---chHHHHHHHHHHHHcCCCEEEEecC
Confidence 335677777777777777666532211 111122333332 46888887653
No 57
>PRK07742 phosphate butyryltransferase; Validated
Probab=42.43 E-value=3.3e+02 Score=26.44 Aligned_cols=208 Identities=15% Similarity=0.144 Sum_probs=106.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEeeCC----------C-----------CCCcHHH----HHHHH
Q 019198 28 SPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD----------M-----------KRVPQQV----LDSIR 82 (344)
Q Consensus 28 ~~~~I~vi~GDGIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~----------g-----------~~lp~~~----~~~~~ 82 (344)
++.+|++-.|+ -+++++++.+.++.-. + +.+.+|.+ | ..-+.+. .+.++
T Consensus 14 ~~~ri~~~~~~--d~~vl~Aa~~a~~e~~--~--~~iLvG~~~~I~~~~~~~~l~~~~~~~Ii~~~~~~~s~~~a~~lV~ 87 (299)
T PRK07742 14 PKKTVAVAVAE--DEEVIEAVAKAIELQL--A--RFRLYGNQEKIMGMLQEHGLQTSEHIEIIHAQSSAEAAELAVKAVR 87 (299)
T ss_pred CCCeEEEeCCC--CHHHHHHHHHHHHcCC--c--eEEEECCHHHHHHHHHHCCCCCCCCcEEECCCCHHHHHHHHHHHHH
Confidence 45788888876 4889999988887631 2 22223322 1 0001222 44555
Q ss_pred --hcCeEEEccccCCCCCCCCchhHHHHhhcCcEEEEEEeecCCCCCCCcccccEEEEecCCceeeecccceeeCCEEEE
Q 019198 83 --KNKVCLKGGLKTPVGGGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIRENTEGEYSGLEHEVVPGVVES 160 (344)
Q Consensus 83 --~~da~l~G~~~~p~~~~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~~~vDivIvREnteG~Y~g~e~~~~~~va~~ 160 (344)
++|++++|..++ -..+|..++....+++...++.+ =++.+ ....|.+. .-+++..
T Consensus 88 ~G~aD~lvsG~~tt---------a~~~~~~l~~~~Gi~~~~~~s~v-------~~~~~-P~~~~~~~------l~D~g~n 144 (299)
T PRK07742 88 NGEADVLMKGNVPT---------ANILKAVLNKEWGLRKGSVLSHV-------AVFEV-PNYDRLIF------VTDAAMN 144 (299)
T ss_pred CCCCCEEEECCcCH---------HHHHHHHhccccCCCCCCcccce-------ehhhe-ecCCCcEE------EEeceec
Confidence 799999988754 22346666543333332222211 00000 00011110 0011111
Q ss_pred EEEeeHHHHHHHHHHHHHHHHhcCC--CceEEEeccchhhhchHHHHHHHHHHHh-----hCCCceeee-eeHhHHHHHH
Q 019198 161 LKVITKFCSERIAKYAFEYAYLNYR--KKVTAVHKANIMKLADGLFLESCREVAT-----KYPSIKYNE-IIVDNCCMQL 232 (344)
Q Consensus 161 ~~~~Tr~~~eRiar~AFe~A~~r~~--~~Vt~v~KaNvlk~tdglf~~~~~eva~-----eyp~I~~~~-~~vD~~~~~L 232 (344)
+. -|-+.-..|+..|-++|+.-|. -||-+..=.+--......-++. .++++ ++|+..++- +.+|++.-.=
T Consensus 145 ~~-p~~e~l~~ia~~a~~~a~~lGie~PkVAlLs~gee~~k~~~~~~eA-~~l~~~~~~~~~~~~~vdG~l~~D~A~~~~ 222 (299)
T PRK07742 145 IA-PDLEQKAAIIQNAVEVARAIGIDLPKVAPLAAVEVVNPAMQATIDA-AALTQMNRRGQIKNCVVDGPLALDNAVSQI 222 (299)
T ss_pred CC-cCHHHHHHHHHHHHHHHHHhCCCCCeEEEEecccCCCCCCHHHHHH-HHHHHHHhhCCCCCeEEeechHHHHhcCHH
Confidence 11 2455566778888899987653 3565553222111122233332 22222 468888754 4556654331
Q ss_pred ---HhCC-----CCccEEecCCc-chhhhhhhhhhhcCCCcccc
Q 019198 233 ---VSKP-----EQFDVMVTPNL-YGNLVSNTAAGIAGGTGVMP 267 (344)
Q Consensus 233 ---v~~P-----~~fdVIvt~Nl-fGDIlSDlaa~l~GglGl~p 267 (344)
.+-| ++-||+|.||+ -|||+--+...+.|+ .+.|
T Consensus 223 ~a~~k~~~s~v~G~Anvli~Pnl~agNi~~K~l~~~~~~-~~g~ 265 (299)
T PRK07742 223 AAEHKGIVSDVAGKADILLVPTIEAGNVLYKSLVYFADA-KVGA 265 (299)
T ss_pred HHHHhCCCCCCCCcCCEEEeCChHHHHHHHHHHHHhcCC-cEec
Confidence 2222 25789999999 599988877777665 4433
No 58
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=42.43 E-value=1.1e+02 Score=24.58 Aligned_cols=56 Identities=13% Similarity=0.191 Sum_probs=38.8
Q ss_pred CceEEEEEcCCCCcHHHH-HHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHHHhcCeEEEcc
Q 019198 28 SPRAVTLIPGDGIGPLVT-NAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRKNKVCLKGG 91 (344)
Q Consensus 28 ~~~~I~vi~GDGIGpEV~-~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~~~~da~l~G~ 91 (344)
+.++|.++=|.|++-.++ ...++.++.-|++++++...++. .-+...++|++|.+|
T Consensus 2 ~~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~~~--------~~~~~~~~Dvill~p 58 (95)
T TIGR00853 2 NETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGSYGA--------AGEKLDDADVVLLAP 58 (95)
T ss_pred CccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEecHHH--------HHhhcCCCCEEEECc
Confidence 357899999999987754 34455555568888887766632 112345789999988
No 59
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=42.06 E-value=69 Score=27.75 Aligned_cols=57 Identities=11% Similarity=0.135 Sum_probs=40.2
Q ss_pred ceEEEEEcCCC--CcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHHHh--cCeEEEccccC
Q 019198 29 PRAVTLIPGDG--IGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRK--NKVCLKGGLKT 94 (344)
Q Consensus 29 ~~~I~vi~GDG--IGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~~~--~da~l~G~~~~ 94 (344)
+.-++.+.||+ +|..++..+ |+..| |+-+++|. +.-|++.++++++ .|++....+.+
T Consensus 3 ~vvigtv~~D~HdiGk~iv~~~---l~~~G----feVi~LG~--~v~~e~~v~aa~~~~adiVglS~l~~ 63 (134)
T TIGR01501 3 TIVLGVIGSDCHAVGNKILDHA---FTNAG----FNVVNLGV--LSPQEEFIKAAIETKADAILVSSLYG 63 (134)
T ss_pred eEEEEEecCChhhHhHHHHHHH---HHHCC----CEEEECCC--CCCHHHHHHHHHHcCCCEEEEecccc
Confidence 56788999998 898777665 67776 45566765 3557888899987 45555555544
No 60
>TIGR00651 pta phosphate acetyltransferase. Model contains a gene from E.coli coding for ethanolamine utilization protein (euti) and also contains similarity to malate oxidoreductases
Probab=41.06 E-value=2.1e+02 Score=28.02 Aligned_cols=98 Identities=18% Similarity=0.125 Sum_probs=58.7
Q ss_pred eHHHHHHHHHHHHHHHHhcC--CCceEEEe---ccchhhhchHHHHHHHHHHHhhCCCceeee-eeHhHHHHHH---HhC
Q 019198 165 TKFCSERIAKYAFEYAYLNY--RKKVTAVH---KANIMKLADGLFLESCREVATKYPSIKYNE-IIVDNCCMQL---VSK 235 (344)
Q Consensus 165 Tr~~~eRiar~AFe~A~~r~--~~~Vt~v~---KaNvlk~tdglf~~~~~eva~eyp~I~~~~-~~vD~~~~~L---v~~ 235 (344)
|-+.--.|+..|-++|+.-| .-||-+.. |.|---.+...-++.+.-+.+++|++.++- +-+|++.-.= .+-
T Consensus 157 ~~e~l~~ia~~a~~~a~~lg~~~PkVAlLs~S~~gs~~~~~~~kv~eA~~l~~~~~~~~~vdG~l~~D~Al~~~~a~~K~ 236 (303)
T TIGR00651 157 NAEQLAEIAIQSAKSAKSFGEIEPKVALLSYSTKGSGSGEDVEKVREATRIAKEKRPDLTIDGELQFDAAFVEKVAEKKA 236 (303)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCCCccHHHHHHHHHHhccCCCeEEEecCchhhhCCHHHHHhhC
Confidence 34555667888889998765 34665553 222111112233455444445789887764 4557664221 112
Q ss_pred C-----CCccEEecCCcc-hhhhhhhhhhhcCC
Q 019198 236 P-----EQFDVMVTPNLY-GNLVSNTAAGIAGG 262 (344)
Q Consensus 236 P-----~~fdVIvt~Nlf-GDIlSDlaa~l~Gg 262 (344)
| ++-||+|+||++ |||+--+.-.+.|+
T Consensus 237 ~~s~v~G~AdvLV~Pnl~aGNi~~K~~~~~~~~ 269 (303)
T TIGR00651 237 PNSPVAGSANVFVFPDLDAGNIGYKIVQRLGDA 269 (303)
T ss_pred CCCccCCcCCEEEeCCchHHHHHHHHHHHhcCC
Confidence 2 368899999997 89988777766554
No 61
>PRK12862 malic enzyme; Reviewed
Probab=40.33 E-value=1.6e+02 Score=32.71 Aligned_cols=99 Identities=18% Similarity=0.106 Sum_probs=65.9
Q ss_pred EeeHHHHHHHHHHHHHHHHhcC-CCceEEE---eccchhhhchHHHHHHHHHHHhhCCCceeee-eeHhHHHHHHHhC--
Q 019198 163 VITKFCSERIAKYAFEYAYLNY-RKKVTAV---HKANIMKLADGLFLESCREVATKYPSIKYNE-IIVDNCCMQLVSK-- 235 (344)
Q Consensus 163 ~~Tr~~~eRiar~AFe~A~~r~-~~~Vt~v---~KaNvlk~tdglf~~~~~eva~eyp~I~~~~-~~vD~~~~~Lv~~-- 235 (344)
-.|.+...++++.+.++++.-| .-||-+. ++.|.-..+...-++.++.+.+++|++.++- +-.|++.-.=++.
T Consensus 608 ~pt~e~La~ia~~aa~~ar~~GIePRVAvLshs~~Gs~~~ee~~~i~pAiellr~~~~g~~VdGPl~aDtAf~~~~~~~K 687 (763)
T PRK12862 608 DPTAEELAEITILAAEEVRRFGIEPKVALLSHSNFGSSDSPSARKMREALEILRERAPDLEVDGEMHGDAALDEELRDRI 687 (763)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcccccCCCCCchHHHHHHHHHHHHhcCCCcEEEcCCCHHHHcCHHHHhhc
Confidence 4578888999999999999765 3467666 3332112222344566666667889888764 4668776543332
Q ss_pred -C-----CCccEEecCCcc-hhhhhhhhhhhcC
Q 019198 236 -P-----EQFDVMVTPNLY-GNLVSNTAAGIAG 261 (344)
Q Consensus 236 -P-----~~fdVIvt~Nlf-GDIlSDlaa~l~G 261 (344)
| ++|||+|++|+. |+|.--+..-+.|
T Consensus 688 ~~~s~vaG~aDvLV~P~~DqGNI~~Kll~f~~g 720 (763)
T PRK12862 688 FPDSRLEGEANLLVFPNLDAANIAYNLLKTAAG 720 (763)
T ss_pred CCCCccCCCCCEEEecChhHhhHHHHHHHHhcc
Confidence 2 359999999994 8998888776654
No 62
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=40.31 E-value=53 Score=32.55 Aligned_cols=44 Identities=23% Similarity=0.292 Sum_probs=31.8
Q ss_pred HHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeeeHhH
Q 019198 175 YAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDN 227 (344)
Q Consensus 175 ~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~vD~ 227 (344)
||+|+|+ ||- +|.++- + |..-...+.+|+.++|+ |++....+|-
T Consensus 65 yA~eLAk-rG~-nvvLIs-----R-t~~KL~~v~kEI~~~~~-vev~~i~~Df 108 (312)
T KOG1014|consen 65 YARELAK-RGF-NVVLIS-----R-TQEKLEAVAKEIEEKYK-VEVRIIAIDF 108 (312)
T ss_pred HHHHHHH-cCC-EEEEEe-----C-CHHHHHHHHHHHHHHhC-cEEEEEEEec
Confidence 8999998 454 477764 3 44455788888888888 8888777773
No 63
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=40.17 E-value=79 Score=27.21 Aligned_cols=57 Identities=12% Similarity=0.154 Sum_probs=38.8
Q ss_pred eEEEEEcCCC--CcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHHHh--cCeEEEccccCC
Q 019198 30 RAVTLIPGDG--IGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRK--NKVCLKGGLKTP 95 (344)
Q Consensus 30 ~~I~vi~GDG--IGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~~~--~da~l~G~~~~p 95 (344)
.-++.+.||+ ||..++..+ |+..| |+-+++|. +.-|++.++++++ .|++..-.+.+.
T Consensus 2 vvigtv~gD~HdiGkniv~~~---L~~~G----feVidLG~--~v~~e~~v~aa~~~~adiVglS~L~t~ 62 (128)
T cd02072 2 IVLGVIGSDCHAVGNKILDHA---FTEAG----FNVVNLGV--LSPQEEFIDAAIETDADAILVSSLYGH 62 (128)
T ss_pred EEEEEeCCchhHHHHHHHHHH---HHHCC----CEEEECCC--CCCHHHHHHHHHHcCCCEEEEeccccC
Confidence 4578889998 999887765 66666 44566765 2446777788877 555655565554
No 64
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type. This model does not discriminate cytosolic, mitochondrial, and chloroplast proteins. However, the model starts very near the amino end of the cytosolic form; the finding of additional amino-terminal sequence may indicate a transit peptide.
Probab=38.64 E-value=24 Score=36.23 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=19.7
Q ss_pred cccEEEEecCCceeeecccceee
Q 019198 132 NVDIVVIRENTEGEYSGLEHEVV 154 (344)
Q Consensus 132 ~vDivIvREnteG~Y~g~e~~~~ 154 (344)
..+++|+|||||+.|.+.+....
T Consensus 124 ~~~i~i~R~~~~~~y~~iD~viv 146 (409)
T TIGR00127 124 EKPIIIGRHAFGDQYRATDFVVP 146 (409)
T ss_pred CCCeeeeccccCCCcCceEEEEe
Confidence 38899999999999999886653
No 65
>PRK13606 LPPG:FO 2-phospho-L-lactate transferase; Provisional
Probab=38.54 E-value=32 Score=33.91 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=18.4
Q ss_pred CCcHHHHHHHHhcCeEEEcc
Q 019198 72 RVPQQVLDSIRKNKVCLKGG 91 (344)
Q Consensus 72 ~lp~~~~~~~~~~da~l~G~ 91 (344)
.-.++++++++++|.+++||
T Consensus 174 ~a~p~vl~AI~~AD~IiiGP 193 (303)
T PRK13606 174 KPAPGVLEAIEEADAVIIGP 193 (303)
T ss_pred CCCHHHHHHHHhCCEEEECC
Confidence 46789999999999999999
No 66
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=38.47 E-value=1.6e+02 Score=26.66 Aligned_cols=50 Identities=8% Similarity=-0.041 Sum_probs=27.1
Q ss_pred CcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHH--HhcCeEEEccc
Q 019198 40 IGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSI--RKNKVCLKGGL 92 (344)
Q Consensus 40 IGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~--~~~da~l~G~~ 92 (344)
--.++.....+.++..|..+.+...+. . ..-..+.++.+ +++|+++..+.
T Consensus 16 ~~~~~~~~i~~~~~~~g~~~~~~~~~~--~-~~~~~~~~~~l~~~~vdgiii~~~ 67 (268)
T cd06277 16 FYSEIYRAIEEEAKKYGYNLILKFVSD--E-DEEEFELPSFLEDGKVDGIILLGG 67 (268)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEEeCCC--C-hHHHHHHHHHHHHCCCCEEEEeCC
Confidence 345666677777777776665554332 1 11111223322 46899988663
No 67
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=38.28 E-value=2.1e+02 Score=25.64 Aligned_cols=52 Identities=4% Similarity=-0.059 Sum_probs=29.8
Q ss_pred CcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHH--HhcCeEEEcccc
Q 019198 40 IGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSI--RKNKVCLKGGLK 93 (344)
Q Consensus 40 IGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~--~~~da~l~G~~~ 93 (344)
-..++...+.+.++..|..+.+...+-+. +..-.+.++.+ .++|+++.-|..
T Consensus 13 ~~~~~~~gi~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~l~~~~vdgiii~~~~ 66 (270)
T cd01545 13 YVSEIQLGALDACRDTGYQLVIEPCDSGS--PDLAERVRALLQRSRVDGVILTPPL 66 (270)
T ss_pred cHHHHHHHHHHHHHhCCCeEEEEeCCCCc--hHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 45677788888888878766654433211 11233444444 257888776543
No 68
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=37.28 E-value=2.1e+02 Score=25.81 Aligned_cols=58 Identities=10% Similarity=0.106 Sum_probs=30.6
Q ss_pred EEEEcC---CCCcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHH--HHhcCeEEEccc
Q 019198 32 VTLIPG---DGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDS--IRKNKVCLKGGL 92 (344)
Q Consensus 32 I~vi~G---DGIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~--~~~~da~l~G~~ 92 (344)
|+++-. |.--.++.....+.++..|..+.+. +.... ...-.+.++. -++.|+++..+.
T Consensus 2 Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~--~~~~~-~~~~~~~l~~~~~~~vdgii~~~~ 64 (273)
T cd06305 2 IAVVRYGGSGDFDQAYLAGTKAEAEALGGDLRVY--DAGGD-DAKQADQIDQAIAQKVDAIIIQHG 64 (273)
T ss_pred eEEEeecCCCcHHHHHHHHHHHHHHHcCCEEEEE--CCCCC-HHHHHHHHHHHHHcCCCEEEEecC
Confidence 556633 4445667777777777777766553 22111 0011122222 136888888664
No 69
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=36.80 E-value=2.4e+02 Score=25.32 Aligned_cols=75 Identities=12% Similarity=-0.012 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHhhCC---Cce-eeeee-----HhHHHHHHHhCCCCccE
Q 019198 171 RIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYP---SIK-YNEII-----VDNCCMQLVSKPEQFDV 241 (344)
Q Consensus 171 Riar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp---~I~-~~~~~-----vD~~~~~Lv~~P~~fdV 241 (344)
+..+.+.++..++|.++|.++.-.... .+.....+-|.+..+++. ... +...- .-.+..++++....+|+
T Consensus 108 ~~g~~~~~~l~~~g~~~i~~i~~~~~~-~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a 186 (270)
T cd06294 108 QAGYDATEYLIKLGHKKIAFVGGDLDL-EVTQDRLQGYKQALEDHGIPDRNEVIISLDFSEEGGYKALKKLLEQHPRPTA 186 (270)
T ss_pred HHHHHHHHHHHHcCCccEEEecCCccc-HHHHHHHHHHHHHHHHcCCCCCcceEEecCCchHHHHHHHHHHHhCCCCCCE
Confidence 344555566566677888888522111 122234455555554442 111 11111 11344466766668999
Q ss_pred EecCC
Q 019198 242 MVTPN 246 (344)
Q Consensus 242 Ivt~N 246 (344)
|+|.|
T Consensus 187 i~~~~ 191 (270)
T cd06294 187 IVATD 191 (270)
T ss_pred EEECC
Confidence 99987
No 70
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=36.58 E-value=1.7e+02 Score=28.49 Aligned_cols=73 Identities=27% Similarity=0.464 Sum_probs=45.8
Q ss_pred HHHHHHhCCCCccEEecCCcchhhhhhhhhhhcCC----CccccCcccCCCcCccCcCCCChhHHHHHHHHHhhhcCchH
Q 019198 228 CCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGG----TGVMPGAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQFPS 303 (344)
Q Consensus 228 ~~~~Lv~~P~~fdVIvt~NlfGDIlSDlaa~l~Gg----lGl~pSa~nigAPdiaGk~iANP~a~Ils~ammL~~lg~~~ 303 (344)
.+.++... +||+|++--=.|- ++-.+.+|++. +|+.|.+ . -. .+-+-||.+.
T Consensus 50 ~a~~a~~~--~~D~via~GGDGT-v~evingl~~~~~~~LgilP~G-T-----------------~N---dfAr~Lgip~ 105 (301)
T COG1597 50 IAREAAVE--GYDTVIAAGGDGT-VNEVANGLAGTDDPPLGILPGG-T-----------------AN---DFARALGIPL 105 (301)
T ss_pred HHHHHHhc--CCCEEEEecCcch-HHHHHHHHhcCCCCceEEecCC-c-----------------hH---HHHHHcCCCc
Confidence 34444444 9999999888886 66677777654 6666666 2 12 2223466554
Q ss_pred HHHHHHHHHHHHHHcCcccCCCCC
Q 019198 304 FADRLETAVKRVISEEKYRTKDLG 327 (344)
Q Consensus 304 ~a~~i~~Av~~~l~~g~~~T~Dlg 327 (344)
. .+++|++ .+.+|..++-|||
T Consensus 106 ~--~~~~Al~-~i~~g~~~~vDlg 126 (301)
T COG1597 106 D--DIEAALE-LIKSGETRKVDLG 126 (301)
T ss_pred h--hHHHHHH-HHHcCCeEEEeeh
Confidence 3 4556655 5667777888997
No 71
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=35.96 E-value=36 Score=34.13 Aligned_cols=21 Identities=33% Similarity=0.476 Sum_probs=17.6
Q ss_pred ceEEEEEcCC--CCcHHHHHHHH
Q 019198 29 PRAVTLIPGD--GIGPLVTNAVE 49 (344)
Q Consensus 29 ~~~I~vi~GD--GIGpEV~~~~~ 49 (344)
+.+|++--|| ||||||+-.+.
T Consensus 9 ~p~IaIT~GDpaGIGPEii~ka~ 31 (345)
T PRK02746 9 RPRLAITLGDPAGIGPEVILKAL 31 (345)
T ss_pred CCcEEEeCCCCcchHHHHHHHHH
Confidence 3589999998 89999987774
No 72
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=35.81 E-value=1.2e+02 Score=27.42 Aligned_cols=76 Identities=9% Similarity=0.093 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhcCCCceEEEeccchhhhchHH----HHHHHHHHHhhCCC--ceeeeeeHhHHHHHHHhCCCCccEEe
Q 019198 170 ERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGL----FLESCREVATKYPS--IKYNEIIVDNCCMQLVSKPEQFDVMV 243 (344)
Q Consensus 170 eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~tdgl----f~~~~~eva~eyp~--I~~~~~~vD~~~~~Lv~~P~~fdVIv 243 (344)
.+..+.|.++-.++|.+++.++.... .. +... |++.+.+..-.+.. +..+..-.-..++++.+++...+.|+
T Consensus 100 ~~~g~~a~~~L~~~g~~~i~~~~~~~-~~-~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~ 177 (263)
T cd06280 100 RAAARTLVEHLVAQGYRRIGGLFGNA-ST-TGAERRAGYEDAMRRHGLAPDARFVAPTAEAAEAALAAWLAAPERPEALV 177 (263)
T ss_pred HHHHHHHHHHHHHCCCceEEEEeCCC-CC-CHHHHHHHHHHHHHHcCCCCChhhcccCHHHHHHHHHHHhcCCCCCcEEE
Confidence 34556677777777778888764322 11 1112 34444332111111 11111111225567776666789999
Q ss_pred cCCc
Q 019198 244 TPNL 247 (344)
Q Consensus 244 t~Nl 247 (344)
|.|=
T Consensus 178 ~~~d 181 (263)
T cd06280 178 ASNG 181 (263)
T ss_pred ECCc
Confidence 9664
No 73
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=35.19 E-value=2.6e+02 Score=31.17 Aligned_cols=99 Identities=18% Similarity=0.114 Sum_probs=64.8
Q ss_pred eHHHHHHHHHHHHHHHHhcC-CCceEEE---eccchhhhchHHHHHHHHHHHhhCCCceeeee-eHhHHHHHHH------
Q 019198 165 TKFCSERIAKYAFEYAYLNY-RKKVTAV---HKANIMKLADGLFLESCREVATKYPSIKYNEI-IVDNCCMQLV------ 233 (344)
Q Consensus 165 Tr~~~eRiar~AFe~A~~r~-~~~Vt~v---~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~-~vD~~~~~Lv------ 233 (344)
|-+.--.|+..|-++|+.-| .-||-+. ++.|.--.+...-++..+-+.+++|++.++-. .+|++.-.=+
T Consensus 602 taeqLa~IA~~aa~~ar~lGiePRVALLS~Sn~Gse~~k~~~~vreA~~llk~~~~~l~~dGemq~D~Al~~~va~~K~p 681 (752)
T PRK07232 602 TAEELAEIALMAAEEVRRFGIEPRVALLSHSNFGSSDSPSARKMREAVELLRERAPDLEVDGEMHGDAALNEEIRKDLYP 681 (752)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCeEEEEeccccCCCCCCcHHHHHHHHHHHHhhCCCcEEEEechHHHhCCHHHHHhhCC
Confidence 45556677888888998765 3477777 66553322333445555555567898887654 5676643222
Q ss_pred hCC--CCccEEecCCcc-hhhhhhhhhhhcCCC
Q 019198 234 SKP--EQFDVMVTPNLY-GNLVSNTAAGIAGGT 263 (344)
Q Consensus 234 ~~P--~~fdVIvt~Nlf-GDIlSDlaa~l~Ggl 263 (344)
.+| ++-||+|.||+- |||+--+...+.|+-
T Consensus 682 ~s~vaG~ANVLIfPdLeaGNI~yKllq~l~g~~ 714 (752)
T PRK07232 682 FSRLKGPANVLVMPNLEAANISYNLLKELGGGV 714 (752)
T ss_pred CCccCCcCCEEEeCCchhhHHHHHHHHHhcCCe
Confidence 222 356899999994 999999988887764
No 74
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=35.12 E-value=1.5e+02 Score=23.34 Aligned_cols=66 Identities=20% Similarity=0.056 Sum_probs=34.9
Q ss_pred HHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHhh--CCCceeeeeeHhHHHHHHHhCCCCccEEecCCcchh
Q 019198 175 YAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATK--YPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGN 250 (344)
Q Consensus 175 ~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~e--yp~I~~~~~~vD~~~~~Lv~~P~~fdVIvt~NlfGD 250 (344)
.++.+|++.+..+|+.+|.+..+ .+.+++-.++ .+.+++.. -|.. ..+-..+..||+|++.+-..+
T Consensus 33 ~~~~l~~~~~~~~v~~vD~s~~~-------~~~a~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~D~v~~~~~~~~ 100 (124)
T TIGR02469 33 ITIEAARLVPNGRVYAIERNPEA-------LRLIERNARRFGVSNIVIVE--GDAP-EALEDSLPEPDRVFIGGSGGL 100 (124)
T ss_pred HHHHHHHHCCCceEEEEcCCHHH-------HHHHHHHHHHhCCCceEEEe--cccc-ccChhhcCCCCEEEECCcchh
Confidence 56677776555789999954322 3333333322 33343322 2211 112234568999998774443
No 75
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=35.05 E-value=1.2e+02 Score=28.56 Aligned_cols=71 Identities=13% Similarity=0.217 Sum_probs=38.0
Q ss_pred HHHHHHHHHhcCCCc-eEEEecc-chhhhchHHHHHHHHHHHhhCCCceeeeeeH-------h---HHHHHHHhCCCCcc
Q 019198 173 AKYAFEYAYLNYRKK-VTAVHKA-NIMKLADGLFLESCREVATKYPSIKYNEIIV-------D---NCCMQLVSKPEQFD 240 (344)
Q Consensus 173 ar~AFe~A~~r~~~~-Vt~v~Ka-Nvlk~tdglf~~~~~eva~eyp~I~~~~~~v-------D---~~~~~Lv~~P~~fd 240 (344)
.+.|.++-.++|.++ +.++.-. +.....+.+ +=+++..+++ ++.++..++ . .++.+|+.++..||
T Consensus 106 ~~~a~~~Li~~Gh~~~I~~i~~~~~~~~~~~R~--~Gy~~Al~~~-Gl~~~~~~i~~~~~~~~~g~~~~~~ll~~~p~id 182 (279)
T PF00532_consen 106 GYEATEYLIKKGHRRPIAFIGGPEDSSTSRERL--QGYRDALKEA-GLPIDEEWIFEGDFDYESGYEAARELLESHPDID 182 (279)
T ss_dssp HHHHHHHHHHTTCCSTEEEEEESTTTHHHHHHH--HHHHHHHHHT-TSCEEEEEEEESSSSHHHHHHHHHHHHHTSTT-S
T ss_pred HHHHHHHHHhcccCCeEEEEecCcchHHHHHHH--HHHHHHHHHc-CCCCCcccccccCCCHHHHHHHHHHHHhhCCCCE
Confidence 346677777888888 6665542 222111112 2233333333 232222211 1 45678888888899
Q ss_pred EEecCC
Q 019198 241 VMVTPN 246 (344)
Q Consensus 241 VIvt~N 246 (344)
.|+|.|
T Consensus 183 ai~~~n 188 (279)
T PF00532_consen 183 AIFCAN 188 (279)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 999988
No 76
>PRK13054 lipid kinase; Reviewed
Probab=34.21 E-value=1.1e+02 Score=29.30 Aligned_cols=79 Identities=9% Similarity=0.073 Sum_probs=44.8
Q ss_pred CceEEEeccchhhhchHHHHHHHHHHHhhCCCceeee-e---eHhHHHHHHHhCCCCccEEecCCcchhhhhhhhhhhcC
Q 019198 186 KKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNE-I---IVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAG 261 (344)
Q Consensus 186 ~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~-~---~vD~~~~~Lv~~P~~fdVIvt~NlfGDIlSDlaa~l~G 261 (344)
++++++...+-- ....|.++...+.+..-++++.. . .....+.+.. ..++|+||+--=.|. ++..+.++.+
T Consensus 4 ~~~~~i~N~~~~--~~~~~~~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~--~~~~d~vvv~GGDGT-l~evv~~l~~ 78 (300)
T PRK13054 4 PKSLLILNGKSA--GNEELREAVGLLREEGHTLHVRVTWEKGDAARYVEEAL--ALGVATVIAGGGDGT-INEVATALAQ 78 (300)
T ss_pred ceEEEEECCCcc--chHHHHHHHHHHHHcCCEEEEEEecCCCcHHHHHHHHH--HcCCCEEEEECCccH-HHHHHHHHHh
Confidence 566676655532 34567776655544322333211 1 1233333443 245899998887887 6777777764
Q ss_pred C-------CccccCc
Q 019198 262 G-------TGVMPGA 269 (344)
Q Consensus 262 g-------lGl~pSa 269 (344)
. +|+.|++
T Consensus 79 ~~~~~~~~lgiiP~G 93 (300)
T PRK13054 79 LEGDARPALGILPLG 93 (300)
T ss_pred hccCCCCcEEEEeCC
Confidence 2 6777766
No 77
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=33.72 E-value=2.1e+02 Score=26.01 Aligned_cols=76 Identities=13% Similarity=0.093 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhc--CCCceEEEecc-chhhhchHHHHHHHHHHHhhCCCceeeee-----eHh---HHHHHHHh-CCCC
Q 019198 171 RIAKYAFEYAYLN--YRKKVTAVHKA-NIMKLADGLFLESCREVATKYPSIKYNEI-----IVD---NCCMQLVS-KPEQ 238 (344)
Q Consensus 171 Riar~AFe~A~~r--~~~~Vt~v~Ka-Nvlk~tdglf~~~~~eva~eyp~I~~~~~-----~vD---~~~~~Lv~-~P~~ 238 (344)
...+.+.++..++ +.+++.++.-. +.. ......+-+.+..+++|+++.... -.+ .++.++++ +|..
T Consensus 108 ~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~--~~~~R~~Gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 185 (273)
T cd06309 108 EEGRRAADWLAKATGGKGNIVELQGTVGSS--VAIDRKKGFAEVIKKYPNMKIVASQTGDFTRAKGKEVMEALLKAHGDD 185 (273)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEeCCCCCc--hHHHHHHHHHHHHHHCCCCEEeeccCCcccHHHHHHHHHHHHHhCCCC
Confidence 3445555555554 66788777522 211 112333444444445665543221 112 24456664 5657
Q ss_pred ccEEecCCcc
Q 019198 239 FDVMVTPNLY 248 (344)
Q Consensus 239 fdVIvt~Nlf 248 (344)
+|+|++.|-.
T Consensus 186 ~~aI~~~~d~ 195 (273)
T cd06309 186 IDAVYAHNDE 195 (273)
T ss_pred ccEEEECCcH
Confidence 9999998744
No 78
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=33.49 E-value=2.8e+02 Score=25.58 Aligned_cols=42 Identities=10% Similarity=-0.050 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHHHhcCeEEEcc
Q 019198 42 PLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRKNKVCLKGG 91 (344)
Q Consensus 42 pEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~~~~da~l~G~ 91 (344)
.+++....+.++..|..+-+...+ . .++.+. ..+.|+++..+
T Consensus 23 ~~~~~~i~~~~~~~gy~~~~~~~~---~----~~~~l~-~~~vdgiIi~~ 64 (269)
T cd06287 23 MEVAAAAAESALERGLALCLVPPH---E----ADSPLD-ALDIDGAILVE 64 (269)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCC---C----chhhhh-ccCcCeEEEec
Confidence 477777888888878766554322 1 112232 45788877643
No 79
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=33.49 E-value=3.3e+02 Score=24.55 Aligned_cols=74 Identities=19% Similarity=0.170 Sum_probs=37.4
Q ss_pred HHHHHHHHHhc--CCCceEEEec-cchhhhchHHHHHHHHHHHhhCCCceeeeee--------HhHHHHHHHhCCCCccE
Q 019198 173 AKYAFEYAYLN--YRKKVTAVHK-ANIMKLADGLFLESCREVATKYPSIKYNEII--------VDNCCMQLVSKPEQFDV 241 (344)
Q Consensus 173 ar~AFe~A~~r--~~~~Vt~v~K-aNvlk~tdglf~~~~~eva~eyp~I~~~~~~--------vD~~~~~Lv~~P~~fdV 241 (344)
.+.+.++..++ +++++.++.= .+.. ....+.+-+++..++++++++.... .-.++.++++...+.|+
T Consensus 111 g~~~~~~l~~~~~g~~~i~~i~~~~~~~--~~~~R~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 188 (272)
T cd06300 111 GKQGAEWLVKELGGKGNVLVVRGLAGHP--VDEDRYAGAKEVLKEYPGIKIVGEVYGDWDQAVAQKAVADFLASNPDVDG 188 (272)
T ss_pred HHHHHHHHHHHcCCCceEEEEECCCCCc--chHHHHHHHHHHHHHCCCcEEEeecCCCCCHHHHHHHHHHHHHhCCCcCE
Confidence 34444444444 5677777742 1211 1112333444444556655443211 12355666665447899
Q ss_pred EecCCcc
Q 019198 242 MVTPNLY 248 (344)
Q Consensus 242 Ivt~Nlf 248 (344)
|+|.|-.
T Consensus 189 i~~~~d~ 195 (272)
T cd06300 189 IWTQGGD 195 (272)
T ss_pred EEecCCC
Confidence 9998755
No 80
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=33.41 E-value=2.4e+02 Score=25.88 Aligned_cols=49 Identities=6% Similarity=0.015 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHH--HhcCeEEEcccc
Q 019198 42 PLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSI--RKNKVCLKGGLK 93 (344)
Q Consensus 42 pEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~--~~~da~l~G~~~ 93 (344)
.++...+.+.++..|..+.|...+- . ..--.+.++.+ ++.|+++..|..
T Consensus 15 ~~~~~gi~~~~~~~G~~~~~~~~~~--d-~~~~~~~i~~~~~~~vdgiii~~~~ 65 (272)
T cd06313 15 AQGKQAADEAGKLLGVDVTWYGGAL--D-AVKQVAAIENMASQGWDFIAVDPLG 65 (272)
T ss_pred HHHHHHHHHHHHHcCCEEEEecCCC--C-HHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 4677777777777787776643221 1 00111222222 357888887653
No 81
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=33.02 E-value=1.7e+02 Score=24.10 Aligned_cols=54 Identities=15% Similarity=0.222 Sum_probs=39.5
Q ss_pred eEEEEEcCCCCcHHHHH-HHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHHHhcCeEEEcc
Q 019198 30 RAVTLIPGDGIGPLVTN-AVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRKNKVCLKGG 91 (344)
Q Consensus 30 ~~I~vi~GDGIGpEV~~-~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~~~~da~l~G~ 91 (344)
.+|.++=|-|+|-.++- ...+..+..+++++.+.+..... . +...++|++|.||
T Consensus 4 kkIllvC~~G~sTSll~~km~~~~~~~gi~~~V~A~~~~~~-----~---~~~~~~DviLl~P 58 (106)
T PRK10499 4 KHIYLFCSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLA-----G---EKGQNADVVLLGP 58 (106)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHCCCCEEEEEeecchh-----h---ccccCCCEEEECH
Confidence 58999999999999988 77777777788888765443211 1 1234689999988
No 82
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=32.63 E-value=2.9e+02 Score=24.64 Aligned_cols=52 Identities=4% Similarity=-0.006 Sum_probs=28.1
Q ss_pred cHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHH--HhcCeEEEccccC
Q 019198 41 GPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSI--RKNKVCLKGGLKT 94 (344)
Q Consensus 41 GpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~--~~~da~l~G~~~~ 94 (344)
-.++.....+.++..+..+.+...+- .......+.++.+ .+.|+++..+...
T Consensus 14 ~~~~~~gi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~vdgiii~~~~~ 67 (264)
T cd01574 14 PSSTLAAIESAAREAGYAVTLSMLAE--ADEEALRAAVRRLLAQRVDGVIVNAPLD 67 (264)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEeCCC--CchHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 35677777777777776655442211 0011223334434 3588888766543
No 83
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=32.40 E-value=2.3e+02 Score=25.27 Aligned_cols=51 Identities=6% Similarity=-0.024 Sum_probs=29.5
Q ss_pred CCCcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHH-HHHH--HhcCeEEEccc
Q 019198 38 DGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQV-LDSI--RKNKVCLKGGL 92 (344)
Q Consensus 38 DGIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~-~~~~--~~~da~l~G~~ 92 (344)
|---.++.....+.++..|..+.+...+- +.-..+. .+.+ ++.|+++..+.
T Consensus 15 ~~~~~~~~~~i~~~~~~~g~~~~~~~~~~----~~~~~~~~~~~~~~~~vdgiii~~~ 68 (268)
T cd06271 15 DPFFAEFLSGLSEALAEHGYDLVLLPVDP----DEDPLEVYRRLVESGLVDGVIISRT 68 (268)
T ss_pred CccHHHHHHHHHHHHHHCCceEEEecCCC----cHHHHHHHHHHHHcCCCCEEEEecC
Confidence 45566788888888888887766654321 1112222 2323 35788887654
No 84
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=32.40 E-value=3.2e+02 Score=24.73 Aligned_cols=69 Identities=19% Similarity=0.238 Sum_probs=36.4
Q ss_pred HHHHHHHHhc--CCCceEEEec-cchhhhchHHHHHHHHHHHhhCCCceeeee-eH----h---HHHHHHHhCCCCccEE
Q 019198 174 KYAFEYAYLN--YRKKVTAVHK-ANIMKLADGLFLESCREVATKYPSIKYNEI-IV----D---NCCMQLVSKPEQFDVM 242 (344)
Q Consensus 174 r~AFe~A~~r--~~~~Vt~v~K-aNvlk~tdglf~~~~~eva~eyp~I~~~~~-~v----D---~~~~~Lv~~P~~fdVI 242 (344)
+.+.++..++ ++++|.++.= .+ . +.....+-|.+.-++|| +++... .. + ..+.+++++..++|+|
T Consensus 114 ~~aa~~l~~~~~g~~~i~~~~g~~~-~--~~~~R~~gf~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai 189 (274)
T cd06311 114 RVAGEYIATKLGGNGNIVVLRGIPT-P--IDNERVDAFDAAIAKYP-IKILDRQYANWNRDDAFSVMQDLLTKFPKIDAV 189 (274)
T ss_pred HHHHHHHHHHhCCCCeEEEEECCCC-c--chhHHHHHHHHHHhhCC-cEEEeccCCCCcHHHHHHHHHHHHHhCCCcCEE
Confidence 3444444443 5678877742 22 2 22344556666656777 554321 11 1 2234555543369999
Q ss_pred ecCC
Q 019198 243 VTPN 246 (344)
Q Consensus 243 vt~N 246 (344)
+|.|
T Consensus 190 ~~~~ 193 (274)
T cd06311 190 WAHD 193 (274)
T ss_pred EECC
Confidence 9987
No 85
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=32.36 E-value=2.3e+02 Score=25.38 Aligned_cols=74 Identities=9% Similarity=0.050 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhcCCCceEEEe-ccchhhhchHHHHHHHHHHHhhCC-Cceee---ee--eHh---HHHHHHHhCCCCcc
Q 019198 171 RIAKYAFEYAYLNYRKKVTAVH-KANIMKLADGLFLESCREVATKYP-SIKYN---EI--IVD---NCCMQLVSKPEQFD 240 (344)
Q Consensus 171 Riar~AFe~A~~r~~~~Vt~v~-KaNvlk~tdglf~~~~~eva~eyp-~I~~~---~~--~vD---~~~~~Lv~~P~~fd 240 (344)
..++.|.++..++|.++|-++. ..+.. ....+.+-|.+..+++. ++... .. -.+ ....+++++...+|
T Consensus 102 ~~~~~a~~~l~~~g~~~i~~l~~~~~~~--~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 179 (269)
T cd06288 102 QGGYDATRHLLAAGHRRIAFINGEPWML--AAKDRLKGYRQALAEAGIPFDPDLVVHGDWSADDGYEAAAALLDLDDRPT 179 (269)
T ss_pred HHHHHHHHHHHHcCCceEEEEeCCccch--hHHHHHHHHHHHHHHcCCCCCHHHeEeCCCChHHHHHHHHHHHhCCCCCC
Confidence 3455666666667788888884 22311 12233444455444442 11111 11 111 33456665544799
Q ss_pred EEecCC
Q 019198 241 VMVTPN 246 (344)
Q Consensus 241 VIvt~N 246 (344)
+|++.|
T Consensus 180 ai~~~~ 185 (269)
T cd06288 180 AIFCGN 185 (269)
T ss_pred EEEEeC
Confidence 999876
No 86
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=31.58 E-value=52 Score=32.81 Aligned_cols=25 Identities=28% Similarity=0.573 Sum_probs=17.9
Q ss_pred ceEEEEEcCC--CCcHHHHHHHHHHHHHcC
Q 019198 29 PRAVTLIPGD--GIGPLVTNAVEQVMEAMH 56 (344)
Q Consensus 29 ~~~I~vi~GD--GIGpEV~~~~~~vl~~~~ 56 (344)
+.+|++-.|| |||||| ..+.++...
T Consensus 3 ~~~iAit~GDPaGIGPEi---~~~~~~~~~ 29 (332)
T COG1995 3 KPRIAITMGDPAGIGPEL---VALALAELP 29 (332)
T ss_pred CCceEecCCCcccCCHHH---HHHHhhhcc
Confidence 4689999998 899999 344444443
No 87
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=31.40 E-value=1.8e+02 Score=23.21 Aligned_cols=55 Identities=7% Similarity=0.204 Sum_probs=41.2
Q ss_pred ceEEEEEcCCCCcHHHH--HHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHHHhcCeEEEcc
Q 019198 29 PRAVTLIPGDGIGPLVT--NAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRKNKVCLKGG 91 (344)
Q Consensus 29 ~~~I~vi~GDGIGpEV~--~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~~~~da~l~G~ 91 (344)
+++|.+.=|-|+|-..+ ...+++++.-|++++++..+++. ++ ..++++|+++.++
T Consensus 2 k~kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~~~~e----~~----~~~~~~D~iv~t~ 58 (94)
T PRK10310 2 KRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNE----IE----TYMDGVHLICTTA 58 (94)
T ss_pred CCeEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecHHH----Hh----hhcCCCCEEEECC
Confidence 35799999999998887 56669999999999888766642 22 2235689988765
No 88
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=31.19 E-value=1.7e+02 Score=26.34 Aligned_cols=52 Identities=8% Similarity=-0.027 Sum_probs=25.6
Q ss_pred CCcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHH--HhcCeEEEcccc
Q 019198 39 GIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSI--RKNKVCLKGGLK 93 (344)
Q Consensus 39 GIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~--~~~da~l~G~~~ 93 (344)
.--.++.....+.++..|..+.+...+ . ...--.+.++.+ ++.|+++..|..
T Consensus 12 ~~~~~~~~gi~~~~~~~gy~~~~~~~~--~-~~~~~~~~i~~l~~~~~dgiii~~~~ 65 (265)
T cd06290 12 PFYGRILKGMERGLNGSGYSPIIATGH--W-NQSRELEALELLKSRRVDALILLGGD 65 (265)
T ss_pred chHHHHHHHHHHHHHHCCCEEEEEeCC--C-CHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 344566666666666667555442211 1 011111333333 248888877643
No 89
>KOG0189 consensus Phosphoadenosine phosphosulfate reductase [Amino acid transport and metabolism]
Probab=31.06 E-value=1.2e+02 Score=28.79 Aligned_cols=60 Identities=17% Similarity=0.165 Sum_probs=44.8
Q ss_pred HHHHHhcCC-CceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeeeHhHHH-HHHHhCCCCcc
Q 019198 177 FEYAYLNYR-KKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCC-MQLVSKPEQFD 240 (344)
Q Consensus 177 Fe~A~~r~~-~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~vD~~~-~~Lv~~P~~fd 240 (344)
.+||.+.++ -+|.+++-..-.+.|-.|| .+|.+.|+.|.++.|.-|++. ..++++-..|-
T Consensus 62 id~~~~~~~~~~l~~idT~~~~PeT~~l~----d~VekkY~~i~I~~~~pd~~e~ea~~~~K~~~~ 123 (261)
T KOG0189|consen 62 IDMLSKTGRPFRLFFIDTLHHFPETLRLF----DAVEKKYGNIRIHVYFPDAVEVEALFASKGGFS 123 (261)
T ss_pred HHHHHHcCCCceeEEeeccccChHHHHHH----HHHHHhcCceEEEEEcchhHHHHHHHHhccchh
Confidence 466766654 3799998887777776565 567888999999999999886 44677666553
No 90
>COG2838 Icd Monomeric isocitrate dehydrogenase [Energy production and conversion]
Probab=30.82 E-value=5.3e+02 Score=27.64 Aligned_cols=156 Identities=17% Similarity=0.165 Sum_probs=96.0
Q ss_pred EEEeeHHHHHHHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHhhC--CCceeeee-eHhHHHHHHHhCCC
Q 019198 161 LKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKY--PSIKYNEI-IVDNCCMQLVSKPE 237 (344)
Q Consensus 161 ~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~ey--p~I~~~~~-~vD~~~~~Lv~~P~ 237 (344)
.+.....-++..++.|.+.||..|---|.-.|-.-. .|.-...-++..-+++ .+..+.-+ .+.++-..|.+=-.
T Consensus 460 ~cq~kdapi~dWVkLaV~RarlS~~pavFWLDp~Ra---hd~~li~kV~~yLkdhdt~GldI~Ilsp~ea~~~sl~rl~~ 536 (744)
T COG2838 460 MCQVKDAPIRDWVKLAVTRARLSGMPAVFWLDPYRA---HDKELIKKVEAYLKDHDTNGLDIQILSPVEAMRYSLERLRR 536 (744)
T ss_pred HHhcccchHHHHHHHHHHHHhhcCCceEEEeCcCcc---chHHHHHHHHHHhhhcCCCCcceEEecHHHHHHHHHHHHHc
Confidence 334456678889999999999876444555443221 2332233333333332 24445444 45666566655445
Q ss_pred Ccc-EEecCCcchhhhhhhhhhh--------------cCCCccccCcccCC-CcCccC----cC--CCChhHHHHHHHHH
Q 019198 238 QFD-VMVTPNLYGNLVSNTAAGI--------------AGGTGVMPGAGNVG-NEKVVE----QK--KANPVALLLSSAMM 295 (344)
Q Consensus 238 ~fd-VIvt~NlfGDIlSDlaa~l--------------~GglGl~pSa~nig-APdiaG----k~--iANP~a~Ils~amm 295 (344)
+-| +-||.|..-|.|+|+.--| +-|=||.-.+ -=| ||...- +| .=+.+|-+|+.+.-
T Consensus 537 G~DtIsvTGNvLRDYlTDLFPIlELGTSAKMLSiVPlmaGGgmfETG-AGGSAPKhVqQ~~eENhLRWDSLGEFLALa~s 615 (744)
T COG2838 537 GEDTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLMAGGGMFETG-AGGSAPKHVQQLVEENHLRWDSLGEFLALAAS 615 (744)
T ss_pred CCceeEecchHHHHHHhhhhhHhhcccccchheeeeeccCCceeecC-CCCCCcHHHHHHHHhcccchhhHHHHHHHHHH
Confidence 556 5699999999999998543 2222333222 212 776432 23 45678999999999
Q ss_pred hhhcCch-------HHHHHHHHHHHHHHHcCc
Q 019198 296 LRHLQFP-------SFADRLETAVKRVISEEK 320 (344)
Q Consensus 296 L~~lg~~-------~~a~~i~~Av~~~l~~g~ 320 (344)
|||+|.. --|+++.+|..+.|...+
T Consensus 616 le~~~~k~gn~kAkvLa~~LD~AtgklLdn~K 647 (744)
T COG2838 616 LEHLGNKTGNAKAKVLAKALDAATGKLLDNNK 647 (744)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHHHHHHhcCC
Confidence 9998853 347788888888887765
No 91
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=30.80 E-value=41 Score=33.57 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=16.9
Q ss_pred eEEEEEcCC--CCcHHHHHHHH
Q 019198 30 RAVTLIPGD--GIGPLVTNAVE 49 (344)
Q Consensus 30 ~~I~vi~GD--GIGpEV~~~~~ 49 (344)
.+|++--|| ||||||+-.+.
T Consensus 4 p~iaIT~GDpaGIGpEii~ka~ 25 (332)
T PRK03743 4 PIIAIPIGDPAGIGPEIVVKTL 25 (332)
T ss_pred CeEEEeCCCCcchHHHHHHHHH
Confidence 479999998 89999987774
No 92
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=30.49 E-value=62 Score=26.45 Aligned_cols=38 Identities=18% Similarity=0.333 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHhhCC
Q 019198 166 KFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYP 216 (344)
Q Consensus 166 r~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp 216 (344)
....|||.|.|.+-=+-. |..+|.=|+.+|+++++.|-
T Consensus 23 ~keaERigr~AlKaGL~e-------------ieI~d~eL~~~FeeIa~RFr 60 (92)
T PF07820_consen 23 TKEAERIGRIALKAGLGE-------------IEISDAELQAAFEEIAARFR 60 (92)
T ss_pred HHHHHHHHHHHHHccccc-------------ccCCHHHHHHHHHHHHHHHh
Confidence 456889998885433221 34578889999999988773
No 93
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=30.42 E-value=1.8e+02 Score=26.06 Aligned_cols=51 Identities=6% Similarity=-0.014 Sum_probs=30.1
Q ss_pred CcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHHH--hcCeEEEcccc
Q 019198 40 IGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIR--KNKVCLKGGLK 93 (344)
Q Consensus 40 IGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~~--~~da~l~G~~~ 93 (344)
--.++.....+.++..|..+.+...+. +..-..+.++.+. +.|+++..|..
T Consensus 13 ~~~~i~~gi~~~~~~~g~~~~~~~~~~---~~~~~~~~i~~l~~~~vdgiii~~~~ 65 (260)
T cd06286 13 YFSQLVDGIEKAALKHGYKVVLLQTNY---DKEKELEYLELLKTKQVDGLILCSRE 65 (260)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEeCCC---ChHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 446788888888888887766543221 1112224444443 47888887653
No 94
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=30.03 E-value=1.8e+02 Score=23.28 Aligned_cols=53 Identities=15% Similarity=0.160 Sum_probs=35.8
Q ss_pred EEEEEcCCCCcHHHHH-HHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHHHhcCeEEEcc
Q 019198 31 AVTLIPGDGIGPLVTN-AVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRKNKVCLKGG 91 (344)
Q Consensus 31 ~I~vi~GDGIGpEV~~-~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~~~~da~l~G~ 91 (344)
+|.++=|-|++..++. ..++.++.-+++++++...++. .-+...++|++|.+|
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~~~v~~~~~~~--------~~~~~~~~Diil~~P 54 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGIDAEIEAVPESE--------LEEYIDDADVVLLGP 54 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCceEEEEecHHH--------HHHhcCCCCEEEECh
Confidence 4778889999988653 3344445558888777766632 113456789999887
No 95
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=29.76 E-value=4.1e+02 Score=24.29 Aligned_cols=62 Identities=3% Similarity=-0.063 Sum_probs=31.1
Q ss_pred cCCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeeeH--------hHHHHHHHhCCCCccEEecCC
Q 019198 183 NYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIV--------DNCCMQLVSKPEQFDVMVTPN 246 (344)
Q Consensus 183 r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~v--------D~~~~~Lv~~P~~fdVIvt~N 246 (344)
+|.+++-++.-..-. +...-.+-|++..+++|+++...... -..+.++++...++|.|+|.|
T Consensus 129 ~g~~~i~~l~~~~~~--~~~~R~~gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~n 198 (280)
T cd06303 129 PNHARYAMLYFSPGY--ISTARGDTFIDCVHARNNWTLTSEFYTDATRQKAYQATSDILSNNPDVDFIYACS 198 (280)
T ss_pred CCCcEEEEEECCCCc--chhHHHHHHHHHHHhCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCCcEEEECC
Confidence 566777777422111 11111234444445566654322111 124456666555799999976
No 96
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=29.49 E-value=46 Score=33.20 Aligned_cols=21 Identities=29% Similarity=0.642 Sum_probs=17.7
Q ss_pred ceEEEEEcCC--CCcHHHHHHHH
Q 019198 29 PRAVTLIPGD--GIGPLVTNAVE 49 (344)
Q Consensus 29 ~~~I~vi~GD--GIGpEV~~~~~ 49 (344)
+.+|++--|| ||||||+-.++
T Consensus 5 ~p~iaIT~GDpaGIGpEii~kal 27 (329)
T PRK01909 5 PLQIAITTGEPAGVGPELTVRAL 27 (329)
T ss_pred CCeEEEeCCCCcchHHHHHHHHH
Confidence 3589999998 89999987774
No 97
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=29.48 E-value=3.5e+02 Score=23.90 Aligned_cols=71 Identities=17% Similarity=0.182 Sum_probs=36.6
Q ss_pred HHHHHHHhc--CCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeee-Hh-------HHHHHHHhCCCCccEEec
Q 019198 175 YAFEYAYLN--YRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEII-VD-------NCCMQLVSKPEQFDVMVT 244 (344)
Q Consensus 175 ~AFe~A~~r--~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~-vD-------~~~~~Lv~~P~~fdVIvt 244 (344)
.+.++..++ |.+++.++.-.+-.. +...+.+-|++..++.+++++.... .+ ..+.++++....+++|++
T Consensus 109 ~~~~~l~~~~~g~~~i~~i~~~~~~~-~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 187 (267)
T cd01536 109 LAGEYLAKLLGGKGKVAIIEGPPGSS-NAQERVKGFRDALKEYPDIEIVAVQDGNWDREKALQAMEDLLQANPDIDAIFA 187 (267)
T ss_pred HHHHHHHHHhCCCceEEEEEcccccc-hHHHHHHHHHHHHHhCCCcEEEEEecCCCcHHHHHHHHHHHHHhCCCccEEEE
Confidence 344444443 567887774322211 1234455566655544334332221 11 355677765446899999
Q ss_pred CC
Q 019198 245 PN 246 (344)
Q Consensus 245 ~N 246 (344)
.|
T Consensus 188 ~~ 189 (267)
T cd01536 188 AN 189 (267)
T ss_pred ec
Confidence 88
No 98
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=28.93 E-value=2.8e+02 Score=24.88 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=15.6
Q ss_pred CCCcHHHHHHHHHHHHHcCCCeeE
Q 019198 38 DGIGPLVTNAVEQVMEAMHAPIYF 61 (344)
Q Consensus 38 DGIGpEV~~~~~~vl~~~~~~i~~ 61 (344)
|---.++.....+.++..|..+.+
T Consensus 11 ~~~~~~~~~~i~~~~~~~g~~~~~ 34 (268)
T cd06273 11 NAIFARVIQAFQETLAAHGYTLLV 34 (268)
T ss_pred CchHHHHHHHHHHHHHHCCCEEEE
Confidence 445566777777777777765554
No 99
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=28.85 E-value=2.2e+02 Score=25.21 Aligned_cols=58 Identities=16% Similarity=0.273 Sum_probs=40.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHHHh-----cCeEEEccc
Q 019198 31 AVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRK-----NKVCLKGGL 92 (344)
Q Consensus 31 ~I~vi~GDGIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~~~-----~da~l~G~~ 92 (344)
+|+++-|-.-=-++++.+.++|+.+|++++..-.-+ ...|++..+.+++ +++++-++-
T Consensus 2 ~V~Ii~gs~SD~~~~~~a~~~L~~~gi~~~~~V~sa----HR~p~~l~~~~~~~~~~~~~viIa~AG 64 (150)
T PF00731_consen 2 KVAIIMGSTSDLPIAEEAAKTLEEFGIPYEVRVASA----HRTPERLLEFVKEYEARGADVIIAVAG 64 (150)
T ss_dssp EEEEEESSGGGHHHHHHHHHHHHHTT-EEEEEE--T----TTSHHHHHHHHHHTTTTTESEEEEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHHcCCCEEEEEEec----cCCHHHHHHHHHHhccCCCEEEEEECC
Confidence 678887766667899999999999996665533333 4568888877765 466666553
No 100
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=28.83 E-value=2e+02 Score=25.98 Aligned_cols=71 Identities=14% Similarity=0.169 Sum_probs=47.7
Q ss_pred CCCcHHHHHHHHHHHHHcCCCeeEEEEEe----eCC------C---CCCc----HHHHHHHHhcCeEEEccccCCCCCCC
Q 019198 38 DGIGPLVTNAVEQVMEAMHAPIYFEKYEV----HGD------M---KRVP----QQVLDSIRKNKVCLKGGLKTPVGGGV 100 (344)
Q Consensus 38 DGIGpEV~~~~~~vl~~~~~~i~~~~~~~----g~~------g---~~lp----~~~~~~~~~~da~l~G~~~~p~~~~~ 100 (344)
+|--..+.+++++-++..|.+++...+.- +.. . ..++ ++.++.++++|++++|. |.. +
T Consensus 13 ~G~t~~l~~~~~~g~~~~G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI~gs---Pvy--~ 87 (207)
T COG0655 13 NGNTAKLAEAVLEGAEEAGAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGIIFGS---PVY--F 87 (207)
T ss_pred CCcHHHHHHHHHHHHHHcCCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEEEeC---Cee--c
Confidence 78888999999999999988877665541 111 1 3344 44555599999999875 321 2
Q ss_pred CchhHHHHhhcCc
Q 019198 101 SSLNVQLRKELDL 113 (344)
Q Consensus 101 ~s~~~~LR~~ldl 113 (344)
.....+|+.-+|=
T Consensus 88 g~vsa~~K~fiDR 100 (207)
T COG0655 88 GNVSAQMKAFIDR 100 (207)
T ss_pred CCchHHHHHHHhh
Confidence 2345667777773
No 101
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=28.65 E-value=3.3e+02 Score=23.80 Aligned_cols=75 Identities=7% Similarity=-0.031 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeee-----eHh---HHHHHHHhCCCCccEEe
Q 019198 172 IAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEI-----IVD---NCCMQLVSKPEQFDVMV 243 (344)
Q Consensus 172 iar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~-----~vD---~~~~~Lv~~P~~fdVIv 243 (344)
..+.+.+++.+.+.++|.+++-.+-.. ....+.+.+++..+++++++.... -.+ ....+++..-.+.|+++
T Consensus 105 ~~~~~~~~l~~~g~~~i~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 183 (264)
T cd01537 105 AGYLAGEHLAEKGHRRIALLAGPLGSS-TARERVAGFKDALKEAGPIEIVLVQEGDWDAEKGYQAAEELLTAHPDPTAIF 183 (264)
T ss_pred HHHHHHHHHHHhcCCcEEEEECCCCCC-cHHHHHHHHHHHHHHcCCcChhhhccCCCCHHHHHHHHHHHHhcCCCCCEEE
Confidence 455666777776778888886543321 122334444444333331221111 112 23445555433789888
Q ss_pred cCCc
Q 019198 244 TPNL 247 (344)
Q Consensus 244 t~Nl 247 (344)
+.|-
T Consensus 184 ~~~~ 187 (264)
T cd01537 184 AAND 187 (264)
T ss_pred EcCc
Confidence 8874
No 102
>PF05542 DUF760: Protein of unknown function (DUF760); InterPro: IPR008479 This entry contains uncharacterised proteins.
Probab=28.51 E-value=84 Score=24.95 Aligned_cols=46 Identities=24% Similarity=0.303 Sum_probs=32.6
Q ss_pred hhhhhhhhhhcCCCccccCcccCCCcCccCcCCCChhHHHHHHHHHhhh-cCc
Q 019198 250 NLVSNTAAGIAGGTGVMPGAGNVGNEKVVEQKKANPVALLLSSAMMLRH-LQF 301 (344)
Q Consensus 250 DIlSDlaa~l~GglGl~pSa~nigAPdiaGk~iANP~a~Ils~ammL~~-lg~ 301 (344)
|++--...++.|+++ |+. .++..=+-...++|-+++++||.-| |.-
T Consensus 28 e~m~~~v~~llG~l~--p~~----~~~~~i~~s~~~La~L~~~~mm~GYfLr~ 74 (86)
T PF05542_consen 28 EAMKQHVSGLLGNLS--PSD----QFNVTIQTSRENLAQLLAWSMMTGYFLRN 74 (86)
T ss_pred HHHHHHHHHHHcCCC--Ccc----cCcceeEECHHHHHHHHHHHHHHhHHHHH
Confidence 445556677788877 777 4454444566788999999999988 443
No 103
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=28.43 E-value=1.9e+02 Score=24.17 Aligned_cols=77 Identities=19% Similarity=0.221 Sum_probs=46.7
Q ss_pred eEEEEEcC----CCCcHHHHHHHHHHHHHcCCCeeEEEEEeeCC--------------CCCCcHHHHHHHHhcCeEEEcc
Q 019198 30 RAVTLIPG----DGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD--------------MKRVPQQVLDSIRKNKVCLKGG 91 (344)
Q Consensus 30 ~~I~vi~G----DGIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~--------------g~~lp~~~~~~~~~~da~l~G~ 91 (344)
+||.+|-| +|....+++++.+.++..+ ++.+.+++... -+.-.++..+.++++|+++++.
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g--~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~s 78 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAG--AEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFAS 78 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHTT--EEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEE
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHcC--CEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEee
Confidence 35666644 4778889999999998885 55555565432 0122345577888999998865
Q ss_pred ccCCCCCCCCchhHHHHhhcCc
Q 019198 92 LKTPVGGGVSSLNVQLRKELDL 113 (344)
Q Consensus 92 ~~~p~~~~~~s~~~~LR~~ldl 113 (344)
|.- +.++...|..-||.
T Consensus 79 ---P~y--~~~~s~~lK~~lD~ 95 (152)
T PF03358_consen 79 ---PVY--NGSVSGQLKNFLDR 95 (152)
T ss_dssp ---EEB--TTBE-HHHHHHHHT
T ss_pred ---cEE--cCcCChhhhHHHHH
Confidence 321 11334556666663
No 104
>PRK12861 malic enzyme; Reviewed
Probab=27.46 E-value=4.2e+02 Score=29.56 Aligned_cols=98 Identities=16% Similarity=0.105 Sum_probs=60.0
Q ss_pred eHHHHHHHHHHHHHHHHhcCC-CceEEEeccch---hhhchHHHHHHHHHHHhhCCCceee-eeeHhHHHHHHHh-----
Q 019198 165 TKFCSERIAKYAFEYAYLNYR-KKVTAVHKANI---MKLADGLFLESCREVATKYPSIKYN-EIIVDNCCMQLVS----- 234 (344)
Q Consensus 165 Tr~~~eRiar~AFe~A~~r~~-~~Vt~v~KaNv---lk~tdglf~~~~~eva~eyp~I~~~-~~~vD~~~~~Lv~----- 234 (344)
|-+....|+..|.++|+.-|- -||-+..=+|. --.+....++..+-+.+++|+++++ ++..|++.-.-++
T Consensus 611 ~aeqla~Ia~~aa~~ak~lGiePkVAlLS~St~GS~~~~~~~km~eA~~l~~~~~pd~~vdGemq~DaAl~~e~a~~K~p 690 (764)
T PRK12861 611 DAEQIAEFTIAAARQMEWLNLTPKVALLSRSNFGSGSAASGVKMRRALEIVREQAPDLEADGEMHGDCALDEGLRARLLP 690 (764)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCeEEEEeccccCCCCCCchhHHHHHHHHHHhhCCCcEEEecCcHHHhCCHHHHHhcCC
Confidence 344455567777788877653 35666642232 1112234455555445578988876 4467865433221
Q ss_pred -C--CCCccEEecCCc-chhhhhhhhhhhcCC
Q 019198 235 -K--PEQFDVMVTPNL-YGNLVSNTAAGIAGG 262 (344)
Q Consensus 235 -~--P~~fdVIvt~Nl-fGDIlSDlaa~l~Gg 262 (344)
+ -++-||+|+||+ =|||+-.+.-.+.|+
T Consensus 691 ~s~vaG~ANVLVfPnLeAGNI~yKll~~l~g~ 722 (764)
T PRK12861 691 MSPLKGAANLLVCPNVDAGNIAYNLLKTEAGS 722 (764)
T ss_pred CCcCCCcCCEEEECCcchhhHHHHHHHHHcCC
Confidence 2 236789999999 999999998877753
No 105
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=27.42 E-value=90 Score=24.38 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=21.6
Q ss_pred eHHHHHHHHHHHHHHHHhcCCCceEEEe
Q 019198 165 TKFCSERIAKYAFEYAYLNYRKKVTAVH 192 (344)
Q Consensus 165 Tr~~~eRiar~AFe~A~~r~~~~Vt~v~ 192 (344)
-.+.+++.+++|+++|++. ..+|+++|
T Consensus 11 ~~~~~~~al~~a~~la~~~-~~~i~~l~ 37 (140)
T PF00582_consen 11 GSEESRRALRFALELAKRS-GAEITLLH 37 (140)
T ss_dssp SSHHHHHHHHHHHHHHHHH-TCEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHhh-CCeEEEEE
Confidence 4566789999999999997 56777765
No 106
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=27.11 E-value=2.3e+02 Score=22.96 Aligned_cols=56 Identities=13% Similarity=0.006 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHhcCCCceEEE-eccchhhhchHHHHHHHHHHHhhCCCceeeeeeHhH
Q 019198 169 SERIAKYAFEYAYLNYRKKVTAV-HKANIMKLADGLFLESCREVATKYPSIKYNEIIVDN 227 (344)
Q Consensus 169 ~eRiar~AFe~A~~r~~~~Vt~v-~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~vD~ 227 (344)
..+-.+-.|.-+.+++ +.|++. ++.+-- .+...+.++++++++|+.|++....+|.
T Consensus 7 ~~~~~~~~~~~~l~~~-~~vvv~f~a~wC~--~C~~~~~~l~~la~~~~~i~~~~vd~d~ 63 (113)
T cd02975 7 DRKALKEEFFKEMKNP-VDLVVFSSKEGCQ--YCEVTKQLLEELSELSDKLKLEIYDFDE 63 (113)
T ss_pred HHHHHHHHHHHHhCCC-eEEEEEeCCCCCC--ChHHHHHHHHHHHHhcCceEEEEEeCCc
Confidence 4445555555555553 334333 444433 3677888999999888888888877774
No 107
>TIGR02709 branched_ptb branched-chain phosphotransacylase. This model distinguishes branched-chain phosphotransacylases like that of Enterococcus faecalis from closely related subfamilies of phosphate butyryltransferase (EC 2.3.1.19) (TIGR02706) and phosphate acetyltransferase (EC 2.3.1.8) (TIGR00651). Members of this family and of TIGR02706 show considerable crossreactivity, and the occurrence of a member of either family near an apparent leucine dehydrogenase will suggest activity on branched chain-acyl-CoA compounds.
Probab=27.07 E-value=5.9e+02 Score=24.72 Aligned_cols=128 Identities=19% Similarity=0.117 Sum_probs=69.9
Q ss_pred eHHHHHHHHHHHHHHHHhcCC--CceEEEe---ccch-hhhchHHHHHHHHHHHhhCCCceeeee-eHhHHHHH------
Q 019198 165 TKFCSERIAKYAFEYAYLNYR--KKVTAVH---KANI-MKLADGLFLESCREVATKYPSIKYNEI-IVDNCCMQ------ 231 (344)
Q Consensus 165 Tr~~~eRiar~AFe~A~~r~~--~~Vt~v~---KaNv-lk~tdglf~~~~~eva~eyp~I~~~~~-~vD~~~~~------ 231 (344)
|-++-..|++.|-+.|++-|. -||-++. |.|- ++.|. --++.. +..++-|+..++-. .+|++.-.
T Consensus 125 ~~eqk~~I~~nA~~~ar~lGie~PkVAlLS~se~~s~~~~st~-~a~~l~-~~~~~~~~~~vdGpl~~D~Al~~e~a~~K 202 (271)
T TIGR02709 125 TQATLIEIVENAKEVAQKLGLHHPKIALLSAAENFNPKMPSSV-LAKEVT-AHFNDQQEATVFGPLSLDLATSEEAVAHK 202 (271)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCCeEEEEecccCCCCCCchHH-HHHHHH-HHHHhCCCCEEEecCchhhhcCHHHHHhh
Confidence 566677789999999998764 3555543 3232 11111 122222 33333378777654 45655322
Q ss_pred HHhCC--CCccEEecCCc-chhhhhhhhhhhcCCCccccCcccCC--CcCccCcCCCChhHHHHHHHHHhh
Q 019198 232 LVSKP--EQFDVMVTPNL-YGNLVSNTAAGIAGGTGVMPGAGNVG--NEKVVEQKKANPVALLLSSAMMLR 297 (344)
Q Consensus 232 Lv~~P--~~fdVIvt~Nl-fGDIlSDlaa~l~GglGl~pSa~nig--APdiaGk~iANP~a~Ils~ammL~ 297 (344)
-..+| ++-||+|.||+ -|||+--+.-.+. +. -..+. -+| .|=+-=.--.++-.-++|.++.++
T Consensus 203 ~~~s~vaG~AniLI~PnleaGNi~yK~l~~~~-~~-~~ggi-l~G~~~PV~~~SR~~s~~~~~~siala~~ 270 (271)
T TIGR02709 203 RYSGPIMGDADILVVPTIDVGNCLYKSLTLFG-HA-KVGGT-IVGTKVPVVLTSRSDSTESKFHSLRFAMR 270 (271)
T ss_pred CCCCCCCCcCCEEEcCChHHHHHHHHHHHHhc-CC-eEEcc-cccCCCCEEECCCCCCHHHHHHHHHHHhc
Confidence 22333 46799999999 5899887766543 32 22223 333 332222223344556666666554
No 108
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=26.83 E-value=3.5e+02 Score=24.37 Aligned_cols=57 Identities=12% Similarity=0.002 Sum_probs=28.5
Q ss_pred EEEEcCC---CCcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHH--HhcCeEEEcc
Q 019198 32 VTLIPGD---GIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSI--RKNKVCLKGG 91 (344)
Q Consensus 32 I~vi~GD---GIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~--~~~da~l~G~ 91 (344)
|+++-.+ .--.++.....+.++..|..+.+...+- . ..-..+.++.+ ++.|+++.-+
T Consensus 2 Ig~i~~~~~~~~~~~~~~gi~~~~~~~gy~v~~~~~~~--~-~~~~~~~i~~~~~~~~dgiii~~ 63 (269)
T cd06293 2 IGLVVPDIANPFFAELADAVEEEADARGLSLVLCATRN--R-PERELTYLRWLDTNHVDGLIFVT 63 (269)
T ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEEEEeCCC--C-HHHHHHHHHHHHHCCCCEEEEeC
Confidence 5555432 2334566666677776776665443221 1 01112333333 3588888754
No 109
>PF01547 SBP_bac_1: Bacterial extracellular solute-binding protein; InterPro: IPR006059 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins and a high affinity periplasmic solute-binding protein. In Gram-positive bacteria, which are surrounded by a single membrane and therefore have no periplasmic region, the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute through the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped into eight family clusters [], which generally correlate with the nature of the solute bound. Family 1 includes the maltose/maltodextrin-binding proteins of Enterobacteriaceae (gene malE) [] and Streptococcus pneumoniae malX; multiple oligosaccharide binding protein of Streptococcus mutans (gene msmE); Escherichia coli glycerol-3-phosphate-binding protein; Serratia marcescens iron-binding protein (gene sfuA) and the homologous proteins (gene fbp) from Haemophilus influenzae and Neisseria; and the E. coli thiamine-binding protein (gene tbpA).; GO: 0005215 transporter activity, 0006810 transport; PDB: 3CFZ_A 2THI_A 3THI_A 4THI_A 1O7T_C 1D9Y_A 1URG_A 1URS_A 1URD_B 3OMB_A ....
Probab=26.69 E-value=1.4e+02 Score=27.13 Aligned_cols=42 Identities=19% Similarity=0.240 Sum_probs=28.8
Q ss_pred HHHHHH-HHHHhhCCCceeeeeeH--hHHHHH---HHhCCCCc-cEEec
Q 019198 203 LFLESC-REVATKYPSIKYNEIIV--DNCCMQ---LVSKPEQF-DVMVT 244 (344)
Q Consensus 203 lf~~~~-~eva~eyp~I~~~~~~v--D~~~~~---Lv~~P~~f-dVIvt 244 (344)
-|.+.+ ++..+++|+|+++...+ ++...+ .+..-... ||+.+
T Consensus 9 ~~~~~~~~~f~k~~~~i~V~~~~~~~~~~~~~~~~~~~sg~~p~Dv~~~ 57 (315)
T PF01547_consen 9 ALQELIIEEFEKEHPGIKVEIEFIPWDDYQQKLNTALASGDAPYDVIFI 57 (315)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEEETHHHHHHHHHHHHHTTGSSESEEEE
T ss_pred HHHHHHHHHHHHHCCCcEEEEEECCCccHHHHHHHHHHcCCChhheEEe
Confidence 567777 77777799999999887 443331 23444444 99998
No 110
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=26.61 E-value=54 Score=32.75 Aligned_cols=21 Identities=33% Similarity=0.711 Sum_probs=17.3
Q ss_pred ceEEEEEcCC--CCcHHHHHHHH
Q 019198 29 PRAVTLIPGD--GIGPLVTNAVE 49 (344)
Q Consensus 29 ~~~I~vi~GD--GIGpEV~~~~~ 49 (344)
+.+|++--|| ||||||+-.+.
T Consensus 4 ~p~iaIT~GDpaGIGpEIi~ka~ 26 (332)
T PRK00232 4 KPRIAITPGDPAGIGPELVAKLL 26 (332)
T ss_pred CCcEEEeCCCCcccHHHHHHHHH
Confidence 3578999898 89999987774
No 111
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=26.42 E-value=2.7e+02 Score=24.96 Aligned_cols=46 Identities=7% Similarity=-0.054 Sum_probs=25.8
Q ss_pred CcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHHH--hcCeEEEccc
Q 019198 40 IGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIR--KNKVCLKGGL 92 (344)
Q Consensus 40 IGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~~--~~da~l~G~~ 92 (344)
--.++.....+.++..|..+.+...+ -+.+.++.+. +.|+++.-+.
T Consensus 13 ~~~~~~~gi~~~~~~~g~~~~~~~~~-------~~~~~~~~l~~~~vdgii~~~~ 60 (261)
T cd06272 13 ALTELVTGINQAISKNGYNMNVSITP-------SLAEAEDLFKENRFDGVIIFGE 60 (261)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEecc-------cHHHHHHHHHHcCcCEEEEeCC
Confidence 33456666666666667665554332 1334444443 5788876553
No 112
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=26.31 E-value=4.8e+02 Score=23.44 Aligned_cols=79 Identities=18% Similarity=0.159 Sum_probs=41.0
Q ss_pred eHHHHHHHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceee-eeeH-----h---HHHHHHHhC
Q 019198 165 TKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYN-EIIV-----D---NCCMQLVSK 235 (344)
Q Consensus 165 Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~-~~~v-----D---~~~~~Lv~~ 235 (344)
.....+..+++..+.+. |+++|-++.=.+.. +.-...+-+.+..+++|+++.. ..+. + ..+.++++.
T Consensus 103 ~~~~g~~~~~~l~~~~~--g~~~i~~i~g~~~~--~~~~R~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 178 (271)
T cd06321 103 NVQAGEISCQYLADRLG--GKGNVAILNGPPVS--AVLDRVAGCKAALAKYPGIKLLSDDQNGKGSRDGGLRVMQGLLTR 178 (271)
T ss_pred hHHHHHHHHHHHHHHhC--CCceEEEEeCCCCc--hHHHHHHHHHHHHHhCCCcEEEeeecCCCCChhhHHHHHHHHHHh
Confidence 34555656655554432 56777777422211 1123345566666677776421 1111 1 134455554
Q ss_pred CCCccEEecCCc
Q 019198 236 PEQFDVMVTPNL 247 (344)
Q Consensus 236 P~~fdVIvt~Nl 247 (344)
....|.|+|.|-
T Consensus 179 ~~~~~ai~~~~d 190 (271)
T cd06321 179 FPKLDGVFAIND 190 (271)
T ss_pred CCCCCEEEECCc
Confidence 446899999764
No 113
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=26.16 E-value=47 Score=32.81 Aligned_cols=19 Identities=26% Similarity=0.476 Sum_probs=16.1
Q ss_pred eEEEEEcCC--CCcHHHHHHH
Q 019198 30 RAVTLIPGD--GIGPLVTNAV 48 (344)
Q Consensus 30 ~~I~vi~GD--GIGpEV~~~~ 48 (344)
.+|++--|| ||||||+-.+
T Consensus 2 p~iaiT~GDpaGIGpEii~ka 22 (307)
T PRK03946 2 KKIAISIGDINGIGLEIALKS 22 (307)
T ss_pred CeEEEcCCCCcccHHHHHHHh
Confidence 468888888 8999998777
No 114
>cd06063 H2MP_Cyano-H2up This group of endopeptidases include HupW enzymes that are specific to the cyanobacterial hydrogenase and are involved in the C-terminal cleavage of the hydrogenase large subunit precursor protein. Cyanobacterial nickel-iron (NiFe)-hydrogenases are found exclusively in the N2-fixing strains and are encoded by hup (hydrogen uptake) genes. These uptake hydrogenases are heterodimers with a large (hupL) and small subunit (hupS) and catalyze the consumption of the H2 produced during N2 fixation. Sequence similarity shows that the putative metal-binding resides are well conserved in this group of hydrogen maturation proteases. This group also includes such proteins as the hydrogenase III from Aquifex aeolicus.
Probab=25.69 E-value=1.1e+02 Score=26.39 Aligned_cols=45 Identities=18% Similarity=0.281 Sum_probs=31.4
Q ss_pred CCCCcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHHHhcCeEEE
Q 019198 37 GDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRKNKVCLK 89 (344)
Q Consensus 37 GDGIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~~~~da~l~ 89 (344)
=||+|+.|+++..+ ...+-+++-+|.| ..+.+.+..++++|.+++
T Consensus 13 DDG~G~~v~~~L~~----~~~~~~v~~id~g----t~~~~l~~~l~~~d~vIi 57 (146)
T cd06063 13 DDGVGPILIRRLQA----YLLPPHVRLVDCG----TAGMEVMFRARGAKQLII 57 (146)
T ss_pred cCcHHHHHHHHHhh----cCCCCCeEEEECC----CCHHHHHHHhcCCCEEEE
Confidence 38999999888754 2334345556664 457888888888888765
No 115
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=25.49 E-value=52 Score=32.76 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=17.1
Q ss_pred ceEEEEEcCC--CCcHHHHHHHH
Q 019198 29 PRAVTLIPGD--GIGPLVTNAVE 49 (344)
Q Consensus 29 ~~~I~vi~GD--GIGpEV~~~~~ 49 (344)
.++|++--|| ||||||+-.+.
T Consensus 2 ~~~iaIT~GDpaGIGpEii~ka~ 24 (326)
T PRK03371 2 TKIIAVTMGDPAGIGPEIIIKSL 24 (326)
T ss_pred CCcEEEeCCCCcchHHHHHHHHh
Confidence 3578888898 99999987764
No 116
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=25.26 E-value=4.6e+02 Score=22.90 Aligned_cols=73 Identities=15% Similarity=0.127 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHhhCC-Cceeeeee-----Hh---HHHHHHHhCCCCccEEe
Q 019198 173 AKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYP-SIKYNEII-----VD---NCCMQLVSKPEQFDVMV 243 (344)
Q Consensus 173 ar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp-~I~~~~~~-----vD---~~~~~Lv~~P~~fdVIv 243 (344)
.+.+.++..++|+++|.++.=.+-.. ....+.+.+.+..+++. +++..... .+ ..+.++++.....|+|+
T Consensus 104 g~~~~~~l~~~g~~~i~~i~~~~~~~-~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 182 (264)
T cd06267 104 AYLAVEHLIELGHRRIAFIGGPPDLS-TARERLEGYREALEEAGIPLDEELIVEGDFSEESGYEAARELLASGERPTAIF 182 (264)
T ss_pred HHHHHHHHHHCCCceEEEecCCCccc-hHHHHHHHHHHHHHHcCCCCCcceEEecccchhhHHHHHHHHHhcCCCCcEEE
Confidence 34444555556778888874322211 11223345555544432 33222111 11 23345565544899999
Q ss_pred cCC
Q 019198 244 TPN 246 (344)
Q Consensus 244 t~N 246 (344)
+.|
T Consensus 183 ~~~ 185 (264)
T cd06267 183 AAN 185 (264)
T ss_pred EcC
Confidence 874
No 117
>TIGR01819 F420_cofD LPPG:FO 2-phospho-L-lactate transferase. This model represents LPPG:Fo 2-phospho-L-lactate transferase, which catalyses the fourth step in the biosynthesis of coenzyme F420, a flavin derivative found in methanogens, the Mycobacteria, and several other lineages. This enzyme is characterized so far in Methanococcus jannaschii but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. The clade represented by this model is one of two major divisions of proteins in pfam model pfam01933.
Probab=25.00 E-value=30 Score=34.03 Aligned_cols=20 Identities=35% Similarity=0.544 Sum_probs=18.0
Q ss_pred CCcHHHHHHHHhcCeEEEcc
Q 019198 72 RVPQQVLDSIRKNKVCLKGG 91 (344)
Q Consensus 72 ~lp~~~~~~~~~~da~l~G~ 91 (344)
.-.++++++++++|+|++||
T Consensus 171 ~a~peal~AI~~AD~IIlGP 190 (297)
T TIGR01819 171 SIAPKVLEAIRKEDNILIGP 190 (297)
T ss_pred CCCHHHHHHHHhCCEEEECC
Confidence 34679999999999999999
No 118
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=24.58 E-value=2.4e+02 Score=26.91 Aligned_cols=85 Identities=22% Similarity=0.243 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHH-hhCC-Cceee------eeeHhHHHHHHHhCCCCccEE
Q 019198 171 RIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVA-TKYP-SIKYN------EIIVDNCCMQLVSKPEQFDVM 242 (344)
Q Consensus 171 Riar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva-~eyp-~I~~~------~~~vD~~~~~Lv~~P~~fdVI 242 (344)
.....||++-....+-.+..+||.--.|..+||-...-.=++ -||. +++.. ..+...+.+-+-.+|++- |+
T Consensus 125 ~~ln~AFrvL~e~~k~~LIai~kgryykr~~Gl~lgpG~fv~aLeyatg~~a~vvGKP~~~fFe~al~~~gv~p~~a-VM 203 (262)
T KOG3040|consen 125 QRLNRAFRVLLEMKKPLLIAIGKGRYYKRVDGLCLGPGPFVAALEYATGCEATVVGKPSPFFFESALQALGVDPEEA-VM 203 (262)
T ss_pred HHHHHHHHHHHcCCCCeEEEecCceeeeeccccccCchHHHHHhhhccCceEEEecCCCHHHHHHHHHhcCCChHHh-eE
Confidence 456679999998755689999999999999999876544443 3563 34332 335666666666778877 88
Q ss_pred ecCCcchhhhhhhh
Q 019198 243 VTPNLYGNLVSNTA 256 (344)
Q Consensus 243 vt~NlfGDIlSDla 256 (344)
+-..+-+|+..-+.
T Consensus 204 IGDD~~dDvgGAq~ 217 (262)
T KOG3040|consen 204 IGDDLNDDVGGAQA 217 (262)
T ss_pred EccccccchhhHhh
Confidence 87776666654333
No 119
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=24.51 E-value=61 Score=32.41 Aligned_cols=20 Identities=40% Similarity=0.612 Sum_probs=16.7
Q ss_pred eEEEEEcCC--CCcHHHHHHHH
Q 019198 30 RAVTLIPGD--GIGPLVTNAVE 49 (344)
Q Consensus 30 ~~I~vi~GD--GIGpEV~~~~~ 49 (344)
.+|++--|| ||||||+-.+.
T Consensus 4 p~iaIT~GDpaGIGpEii~ka~ 25 (336)
T PRK05312 4 RPLALSLGDPAGIGPEIALKAW 25 (336)
T ss_pred CeEEEeCCCCcchHHHHHHHHH
Confidence 478999998 89999987763
No 120
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=24.48 E-value=3.4e+02 Score=21.01 Aligned_cols=60 Identities=23% Similarity=0.267 Sum_probs=37.9
Q ss_pred CCCceEEEeccchhhhchHHHHHHHHHHHhhCCC-ceeee------------eeHhHHH-HHHHh---CCCCccEEecC
Q 019198 184 YRKKVTAVHKANIMKLADGLFLESCREVATKYPS-IKYNE------------IIVDNCC-MQLVS---KPEQFDVMVTP 245 (344)
Q Consensus 184 ~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~-I~~~~------------~~vD~~~-~~Lv~---~P~~fdVIvt~ 245 (344)
..++|++++=..-. .+-+|++..+++++++|+ +.+-+ -+|+... .++.. ++.+.+|.+|.
T Consensus 23 ~~~~v~l~~~~r~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~v~iCG 99 (109)
T PF00175_consen 23 DNRKVTLFYGARTP--EDLLFRDELEALAQEYPNRFHVVYVSSPDDGWDGFKGRVTDLLLEDLLPEKIDPDDTHVYICG 99 (109)
T ss_dssp CTSEEEEEEEESSG--GGSTTHHHHHHHHHHSTTCEEEEEETTTTSSTTSEESSHHHHHHHHHHHHHHCTTTEEEEEEE
T ss_pred CCCCEEEEEEEccc--ccccchhHHHHHHhhcccccccccccccccccCCceeehhHHHHHhhcccccCCCCCEEEEEC
Confidence 35788888854433 266889999999988887 33322 2444443 45554 56666677764
No 121
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=24.17 E-value=2.9e+02 Score=24.78 Aligned_cols=75 Identities=9% Similarity=0.024 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhcCCCceEEEec-cc---hhhhchHHHHHHHHHHHhhCCCcee-----eeeeHhHHHHHHHhCCCCccE
Q 019198 171 RIAKYAFEYAYLNYRKKVTAVHK-AN---IMKLADGLFLESCREVATKYPSIKY-----NEIIVDNCCMQLVSKPEQFDV 241 (344)
Q Consensus 171 Riar~AFe~A~~r~~~~Vt~v~K-aN---vlk~tdglf~~~~~eva~eyp~I~~-----~~~~vD~~~~~Lv~~P~~fdV 241 (344)
+..+.|.++-.++|.+++-++.- .+ ......| |++.+++-.-+++...+ +....-..+.++++...+.|.
T Consensus 100 ~ag~~a~~~L~~~g~~~i~~i~~~~~~~~~~~R~~G-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a 178 (265)
T cd06285 100 LGGRLATRHLLDLGHRRIAVLAGPDYASTARDRLAG-FRAALAEAGIEVPPERIVYSGFDIEGGEAAAEKLLRSDSPPTA 178 (265)
T ss_pred HHHHHHHHHHHHCCCccEEEEeCCcccccHHHHHHH-HHHHHHHcCCCCChhhEEeCCCCHHHHHHHHHHHHcCCCCCCE
Confidence 44455556666677888877742 11 1122233 45555442222221111 111111344455544447899
Q ss_pred EecCC
Q 019198 242 MVTPN 246 (344)
Q Consensus 242 Ivt~N 246 (344)
|+|.|
T Consensus 179 i~~~~ 183 (265)
T cd06285 179 IFAVN 183 (265)
T ss_pred EEEcC
Confidence 99886
No 122
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=24.10 E-value=2.2e+02 Score=28.26 Aligned_cols=71 Identities=10% Similarity=0.143 Sum_probs=39.3
Q ss_pred CCceEEEEE-cCCCCcHHHHHHHHHHHHH-------------cCCCeeEEEEEeeCC--CCCCcHHHHHHHHhcCeEEEc
Q 019198 27 GSPRAVTLI-PGDGIGPLVTNAVEQVMEA-------------MHAPIYFEKYEVHGD--MKRVPQQVLDSIRKNKVCLKG 90 (344)
Q Consensus 27 ~~~~~I~vi-~GDGIGpEV~~~~~~vl~~-------------~~~~i~~~~~~~g~~--g~~lp~~~~~~~~~~da~l~G 90 (344)
+..++|+++ .+-|||+-+.=-.+ ++- -|+..|+.+++-... |-.=+++.-++++.+|+++.
T Consensus 26 ~~~~KVAvlGAaGGIGQPLSLLlK--~np~Vs~LaLYDi~~~~GVaaDlSHI~T~s~V~g~~g~~~L~~al~~advVvI- 102 (345)
T KOG1494|consen 26 QRGLKVAVLGAAGGIGQPLSLLLK--LNPLVSELALYDIANTPGVAADLSHINTNSSVVGFTGADGLENALKGADVVVI- 102 (345)
T ss_pred cCcceEEEEecCCccCccHHHHHh--cCcccceeeeeecccCCcccccccccCCCCceeccCChhHHHHHhcCCCEEEe-
Confidence 467999999 66689996542221 110 023333333332221 22225566677788998876
Q ss_pred cccCCCCCCC
Q 019198 91 GLKTPVGGGV 100 (344)
Q Consensus 91 ~~~~p~~~~~ 100 (344)
|-|-|+.++.
T Consensus 103 PAGVPRKPGM 112 (345)
T KOG1494|consen 103 PAGVPRKPGM 112 (345)
T ss_pred cCCCCCCCCC
Confidence 4477765443
No 123
>PRK00861 putative lipid kinase; Reviewed
Probab=23.89 E-value=2.1e+02 Score=27.30 Aligned_cols=80 Identities=9% Similarity=0.107 Sum_probs=41.6
Q ss_pred CceEEEeccchhhh-chHHHHHHHHHHHhhCCCceeeee----eHhHHHHHHHhCCCCccEEecCCcchhhhhhhhhhhc
Q 019198 186 KKVTAVHKANIMKL-ADGLFLESCREVATKYPSIKYNEI----IVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIA 260 (344)
Q Consensus 186 ~~Vt~v~KaNvlk~-tdglf~~~~~eva~eyp~I~~~~~----~vD~~~~~Lv~~P~~fdVIvt~NlfGDIlSDlaa~l~ 260 (344)
+++.++...+.=+. ....|.++...+.+. .++++... .....+.+... +.+|+||+--=.|. ++..+.++.
T Consensus 3 ~~~~iI~NP~sG~~~~~~~~~~i~~~l~~~-~~~~~~~t~~~~~a~~~a~~~~~--~~~d~vv~~GGDGT-l~evv~~l~ 78 (300)
T PRK00861 3 RSACLIFNPVAGQGNPEVDLALIRAILEPE-MDLDIYLTTPEIGADQLAQEAIE--RGAELIIASGGDGT-LSAVAGALI 78 (300)
T ss_pred ceEEEEECCCCCCCchhhhHHHHHHHHHhc-CceEEEEccCCCCHHHHHHHHHh--cCCCEEEEECChHH-HHHHHHHHh
Confidence 45666665554321 123466665444432 23332221 12233333332 56788888766666 677777776
Q ss_pred CC---CccccCc
Q 019198 261 GG---TGVMPGA 269 (344)
Q Consensus 261 Gg---lGl~pSa 269 (344)
+. +|+.|.+
T Consensus 79 ~~~~~lgviP~G 90 (300)
T PRK00861 79 GTDIPLGIIPRG 90 (300)
T ss_pred cCCCcEEEEcCC
Confidence 54 5666666
No 124
>PRK09701 D-allose transporter subunit; Provisional
Probab=23.57 E-value=5.7e+02 Score=24.05 Aligned_cols=63 Identities=10% Similarity=0.078 Sum_probs=34.7
Q ss_pred eEEEEEcCC---CCcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHH--HhcCeEEEcccc
Q 019198 30 RAVTLIPGD---GIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSI--RKNKVCLKGGLK 93 (344)
Q Consensus 30 ~~I~vi~GD---GIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~--~~~da~l~G~~~ 93 (344)
.+|+++.-| .--.++...+.+.++..|..+.+...+.... ..-..+.++.+ ++.|+++.-+..
T Consensus 25 ~~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~v~~~~~~~~~~-~~~~~~~i~~l~~~~vDgiIi~~~~ 92 (311)
T PRK09701 25 AEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGD-FQSQLQLFEDLSNKNYKGIAFAPLS 92 (311)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHHHcCCeEEEecCCCCCC-HHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 478888644 3345667777777777777666543222111 11112334343 358888887643
No 125
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=23.38 E-value=3.3e+02 Score=24.41 Aligned_cols=51 Identities=8% Similarity=0.098 Sum_probs=25.5
Q ss_pred CcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHH--HHhcCeEEEcccc
Q 019198 40 IGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDS--IRKNKVCLKGGLK 93 (344)
Q Consensus 40 IGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~--~~~~da~l~G~~~ 93 (344)
--.++.....+.++..|..+.+...+- . ..-..+.++. -++.|+++..+..
T Consensus 13 ~~~~~~~~~~~~~~~~g~~~~~~~~~~--~-~~~~~~~i~~l~~~~vdgiii~~~~ 65 (264)
T cd06274 13 SFARIAKRLEALARERGYQLLIACSDD--D-PETERETVETLIARQVDALIVAGSL 65 (264)
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEeCCC--C-HHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 345566666666666676655532211 0 0011122222 2368888877654
No 126
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=22.96 E-value=2.3e+02 Score=21.77 Aligned_cols=39 Identities=21% Similarity=0.275 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHhhCCC
Q 019198 168 CSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPS 217 (344)
Q Consensus 168 ~~eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~ 217 (344)
-..++++.|+++|++++ .||.. ++..-...+++ ..+|.|
T Consensus 39 ia~~L~~~~l~~a~~~~-~kv~p---------~C~y~~~~~~~-hpey~d 77 (78)
T PF14542_consen 39 IAKKLVEAALDYARENG-LKVVP---------TCSYVAKYFRR-HPEYQD 77 (78)
T ss_dssp HHHHHHHHHHHHHHHTT--EEEE---------TSHHHHHHHHH--GGGTT
T ss_pred HHHHHHHHHHHHHHHCC-CEEEE---------ECHHHHHHHHh-Cccccc
Confidence 35889999999999984 55543 35555555543 334544
No 127
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=22.81 E-value=5.6e+02 Score=22.97 Aligned_cols=60 Identities=13% Similarity=0.164 Sum_probs=29.8
Q ss_pred EEEEEcCCC---CcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCC-CcHHHHHHH--HhcCeEEEccc
Q 019198 31 AVTLIPGDG---IGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKR-VPQQVLDSI--RKNKVCLKGGL 92 (344)
Q Consensus 31 ~I~vi~GDG---IGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~-lp~~~~~~~--~~~da~l~G~~ 92 (344)
||+++..|= --.+++....+.++..|..+.+...+-. +++ -..+.++.+ ++.|+++..+.
T Consensus 1 ~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~i~~l~~~~vdgvii~~~ 66 (273)
T cd06310 1 KIALVPKGTTSDFWQAVKAGAEAAAKELGVKVTFQGPASE--TDVAGQVNLLENAIARGPDAILLAPT 66 (273)
T ss_pred CeEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEecCccC--CCHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 577776551 1245566666666666766655432111 111 111222222 35888887654
No 128
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi
Probab=22.67 E-value=4.1e+02 Score=24.06 Aligned_cols=44 Identities=7% Similarity=-0.049 Sum_probs=25.9
Q ss_pred CCCcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHHHhcCeEEEc
Q 019198 38 DGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRKNKVCLKG 90 (344)
Q Consensus 38 DGIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~~~~da~l~G 90 (344)
+-.-.+++....+.++..+..+.+...+- +.....++.|+++..
T Consensus 16 ~~~~~~~~~gi~~~~~~~g~~~~~~~~~~---------~~~~~~~~vdgii~~ 59 (270)
T cd01544 16 DPYYLSIRLGIEKRAQELGIELTKFFRDD---------DLLEILEDVDGIIAI 59 (270)
T ss_pred CccHHHHHHHHHHHHHHcCCEEEEEeccc---------hhHHhccCcCEEEEe
Confidence 44456777777888887776665543211 112234677877754
No 129
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional
Probab=22.30 E-value=44 Score=35.02 Aligned_cols=37 Identities=16% Similarity=0.166 Sum_probs=27.8
Q ss_pred cccEEEEecCCceeeecccceee-CCEEEEEEEeeHHHHH
Q 019198 132 NVDIVVIRENTEGEYSGLEHEVV-PGVVESLKVITKFCSE 170 (344)
Q Consensus 132 ~vDivIvREnteG~Y~g~e~~~~-~~va~~~~~~Tr~~~e 170 (344)
..+|+|.|||++|.|.+.+.... +|. -..++||+..|
T Consensus 195 ~~pI~i~Rha~gd~Y~~iD~vi~~~g~--~~~~~~rEnte 232 (483)
T PLN03065 195 KKPICIGRHAFGDQYRATDTVIKGPGK--LKMVFVPEDGN 232 (483)
T ss_pred CCCeEEeecccCCCcCceEEEEecCCe--eEEEeecCCCC
Confidence 37899999999999999887643 343 34567777665
No 130
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=22.19 E-value=5.2e+02 Score=23.33 Aligned_cols=57 Identities=11% Similarity=0.050 Sum_probs=29.9
Q ss_pred EEEEEcCC----CCcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHH-----HhcCeEEEccc
Q 019198 31 AVTLIPGD----GIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSI-----RKNKVCLKGGL 92 (344)
Q Consensus 31 ~I~vi~GD----GIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~-----~~~da~l~G~~ 92 (344)
||+++.-+ .--.++.....+.++..|..+.+...+- .-++...+.+ ++.|+++..|.
T Consensus 1 ~i~~i~~~~~~~~~~~~~~~g~~~~~~~~g~~v~~~~~~~-----~~~~~~~~~i~~l~~~~vdgiii~~~ 66 (271)
T cd06312 1 KIAFVTHGPAGDPFWTVVKNGAEDAAKDLGVDVEYRGPET-----FDVADMARLIEAAIAAKPDGIVVTIP 66 (271)
T ss_pred CEEEecCCCCCCcHHHHHHHHHHHHHHHhCCEEEEECCCC-----CCHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 46666543 2334566666777777676665533211 0122222222 35888888764
No 131
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=22.10 E-value=3.8e+02 Score=23.78 Aligned_cols=21 Identities=5% Similarity=-0.042 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhcCCCceEEEe
Q 019198 172 IAKYAFEYAYLNYRKKVTAVH 192 (344)
Q Consensus 172 iar~AFe~A~~r~~~~Vt~v~ 192 (344)
..+.+.++..++|.++|.++.
T Consensus 103 ~g~~~~~~l~~~g~~~i~~i~ 123 (266)
T cd06282 103 AARDVAQALAALGHRRIAMLA 123 (266)
T ss_pred HHHHHHHHHHHcCcccEEEec
Confidence 444555555566778888874
No 132
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.03 E-value=4.3e+02 Score=23.45 Aligned_cols=74 Identities=8% Similarity=0.016 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhcCCCceEEEecc-chhhhchHHHHHHHHHHHhhC-CCc---ee---eeeeHhHHHHHHHhCCCCccEE
Q 019198 171 RIAKYAFEYAYLNYRKKVTAVHKA-NIMKLADGLFLESCREVATKY-PSI---KY---NEIIVDNCCMQLVSKPEQFDVM 242 (344)
Q Consensus 171 Riar~AFe~A~~r~~~~Vt~v~Ka-Nvlk~tdglf~~~~~eva~ey-p~I---~~---~~~~vD~~~~~Lv~~P~~fdVI 242 (344)
+..+.+.++..++|.++|.++.-. +. ....-+.+-|.+..+++ .++ .. +..-......+++++...+|+|
T Consensus 101 ~~g~~~~~~l~~~g~~~i~~i~~~~~~--~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 178 (266)
T cd06278 101 EAGRLAAELLLAKGCRRIAFIGGPADT--STSRERERGFRDALAAAGVPVVVEEAGDYSYEGGYEAARRLLASRPRPDAI 178 (266)
T ss_pred HHHHHHHHHHHHCCCceEEEEcCCCcc--cchHHHHHHHHHHHHHcCCChhhhccCCCCHHHHHHHHHHHHhcCCCCCEE
Confidence 344556666667788899888532 11 11112233333333221 111 11 1111223445666554479999
Q ss_pred ecCC
Q 019198 243 VTPN 246 (344)
Q Consensus 243 vt~N 246 (344)
+|.|
T Consensus 179 ~~~~ 182 (266)
T cd06278 179 FCAN 182 (266)
T ss_pred EEcC
Confidence 9986
No 133
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=22.02 E-value=5.3e+02 Score=22.86 Aligned_cols=73 Identities=10% Similarity=0.114 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhcCCCceEEEecc-chhhhchHHHHHHHHHHHhhCC-C--cee---eeeeHhH---HHHHHHhCCCCccE
Q 019198 172 IAKYAFEYAYLNYRKKVTAVHKA-NIMKLADGLFLESCREVATKYP-S--IKY---NEIIVDN---CCMQLVSKPEQFDV 241 (344)
Q Consensus 172 iar~AFe~A~~r~~~~Vt~v~Ka-Nvlk~tdglf~~~~~eva~eyp-~--I~~---~~~~vD~---~~~~Lv~~P~~fdV 241 (344)
..+.|.++..++|.+++.+++=. +.. ....+.+-|.+..++++ . ... ...-.+. ...++++....+|.
T Consensus 102 ~g~~~~~~l~~~g~~~i~~l~~~~~~~--~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a 179 (267)
T cd06284 102 AARLAVDHLISLGHRRIALITGPRDNP--LARDRLEGYRQALAEAGLPADEELIQEGDFSLESGYAAARRLLALPDRPTA 179 (267)
T ss_pred HHHHHHHHHHHcCCceEEEEcCCccch--hHHHHHHHHHHHHHHcCCCCCcceEEeCCCChHHHHHHHHHHHhCCCCCcE
Confidence 33445555556677888877421 211 12234445555444432 1 111 1111222 22345544457898
Q ss_pred EecCC
Q 019198 242 MVTPN 246 (344)
Q Consensus 242 Ivt~N 246 (344)
|++.|
T Consensus 180 i~~~~ 184 (267)
T cd06284 180 IFCFS 184 (267)
T ss_pred EEEcC
Confidence 88875
No 134
>cd06062 H2MP_MemB-H2up Endopeptidases belonging to membrane-bound hydrogenases group. These hydrogenases transfer electrons from H2 to a cytochrome that is bound to a membrane-located complex coupling electron transfer to transmembrane proton translocation. Endopeptidase HybD from E. coli is well studied in this group. Maturation of [NiFe] hydrogenases include proteolytic processing of large subunit, assembly with other subunits, and formation of the nickel metallocenter. Hydrogenase maturation endopeptidase (HybD) cleaves a short C-terminal peptide after a His or an Arg residue in the large subunit (pre-HybC) of hydrogenase 2 (hyb operon) in E. coli. This cleavage is nickel dependent. A variety of endopeptidases belong to this group that are similar in function and sequence homology. They include such proteins as HynC, HoxM, and HupD.
Probab=21.98 E-value=1.6e+02 Score=25.18 Aligned_cols=46 Identities=17% Similarity=0.202 Sum_probs=32.0
Q ss_pred CCCCcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHHHhcCeEEE
Q 019198 37 GDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRKNKVCLK 89 (344)
Q Consensus 37 GDGIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~~~~da~l~ 89 (344)
=||+|+.|.+...+.. ..+-+++-++.| ..+.+.++.++++|.+++
T Consensus 13 DDG~G~~va~~L~~~~---~~~~~v~vi~~~----~~~~~l~~~l~~~d~vii 58 (146)
T cd06062 13 DEGIGVHAVERLEENY---SFPENVELIDGG----TLGLELLPYIEEADRLII 58 (146)
T ss_pred cCcHHHHHHHHHHHhc---CCCCCeEEEECC----CCHHHHHHHHhcCCEEEE
Confidence 3899999988765331 344456666664 357888888888888765
No 135
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=21.86 E-value=2.3e+02 Score=30.03 Aligned_cols=110 Identities=9% Similarity=0.165 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHhhCCC-ceee--eeeHhHHHHHHH--hCCCCccEEecCCcchhhhhhhhhhhcCCCccccCcccCC---
Q 019198 202 GLFLESCREVATKYPS-IKYN--EIIVDNCCMQLV--SKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGNVG--- 273 (344)
Q Consensus 202 glf~~~~~eva~eyp~-I~~~--~~~vD~~~~~Lv--~~P~~fdVIvt~NlfGDIlSDlaa~l~GglGl~pSa~nig--- 273 (344)
.-+++.+.+++.+|++ ++++ .--.+......- ...+.+|||++----+.+|-.-.. .|-. .|.
T Consensus 13 ~~l~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~dviIsrG~ta~~i~~~~~--------iPVv-~i~~s~ 83 (526)
T TIGR02329 13 SRLFDLFRDIAPEFDHRANITPIQLGFEDAVREIRQRLGAERCDVVVAGGSNGAYLKSRLS--------LPVI-VIKPTG 83 (526)
T ss_pred HHHHHHHHHHHHhCCCCceEEEEeccHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHhCC--------CCEE-EecCCh
Confidence 3478899999999988 4444 444444443321 125589999999888887776332 3444 443
Q ss_pred ---------CcCccCc----CCCChhHHHHHHHHHhhh-cCc--hHHHHHHHHHHHHHHHcCc
Q 019198 274 ---------NEKVVEQ----KKANPVALLLSSAMMLRH-LQF--PSFADRLETAVKRVISEEK 320 (344)
Q Consensus 274 ---------APdiaGk----~iANP~a~Ils~ammL~~-lg~--~~~a~~i~~Av~~~l~~g~ 320 (344)
|-...++ +--|.+-.+-..+.+|.. +.. -...+-++.+|.+.-++|.
T Consensus 84 ~Dil~al~~a~~~~~~ia~vg~~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~~~~l~~~G~ 146 (526)
T TIGR02329 84 FDVMQALARARRIASSIGVVTHQDTPPALRRFQAAFNLDIVQRSYVTEEDARSCVNDLRARGI 146 (526)
T ss_pred hhHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCceEEEEecCHHHHHHHHHHHHHCCC
Confidence 2222222 122223333344444432 221 1445567788888888884
No 136
>cd00518 H2MP Hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). These enzymes belong to the peptidase family M52. Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE, the large subunit of hydrogenase 3. This cleavage is nickel dependent. This CD also includes such hydrogenase-processing proteins as HydD, HupW, and HoxW, as well as, proteins of the F420-reducing hydrogenase of methanogens (e.g., FrcD). Also included, is the Pyrococcus furiosus FrxA protein, a bifunctional endopeptidase/ sulfhydrogenase found in NADP-reducing hyperthermophiles.The Pyrococcus FrxA is not related to those found in Helicobacter pylori.
Probab=21.84 E-value=1.1e+02 Score=25.79 Aligned_cols=45 Identities=22% Similarity=0.321 Sum_probs=31.1
Q ss_pred CCCCcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHHHhcCeEEE
Q 019198 37 GDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRKNKVCLK 89 (344)
Q Consensus 37 GDGIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~~~~da~l~ 89 (344)
=||+|+.+.+.-.+-. .+-+++-++.| ..+.+.+..++++|.+++
T Consensus 12 DDGvG~~v~~~L~~~~----~~~~v~~id~g----t~~~~l~~~l~~~d~vii 56 (139)
T cd00518 12 DDGFGPAVAERLEERY----LPPGVEVIDGG----TLGLELLDLLEGADRVII 56 (139)
T ss_pred cCcHHHHHHHHHHhcC----CCCCeEEEECC----CCHHHHHHHHhcCCeEEE
Confidence 3899999888765432 13345555554 458888899999988765
No 137
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=21.77 E-value=4.6e+02 Score=23.57 Aligned_cols=67 Identities=18% Similarity=0.166 Sum_probs=34.0
Q ss_pred HHHHHHHhc--CCCceEEEe-ccchhhhchHHHHHHHHHHHhhCCCceeeeeeH---hH---HHHHHHhCCCCccEEecC
Q 019198 175 YAFEYAYLN--YRKKVTAVH-KANIMKLADGLFLESCREVATKYPSIKYNEIIV---DN---CCMQLVSKPEQFDVMVTP 245 (344)
Q Consensus 175 ~AFe~A~~r--~~~~Vt~v~-KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~v---D~---~~~~Lv~~P~~fdVIvt~ 245 (344)
.+.++..+. |.++|.++. ..+.. ..-+.+.+++..+++ ++++....+ +. ...++..+ .|+|++.
T Consensus 119 ~~~~~l~~~~~g~~~i~~l~~~~~~~---~~~r~~g~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~---~dai~~~ 191 (281)
T cd06325 119 TQLELLKKLLPDAKTVGVLYNPSEAN---SVVQVKELKKAAAKL-GIEVVEATVSSSNDVQQAAQSLAGK---VDAIYVP 191 (281)
T ss_pred HHHHHHHHHCCCCcEEEEEeCCCCcc---HHHHHHHHHHHHHhC-CCEEEEEecCCHHHHHHHHHHhccc---CCEEEEc
Confidence 344455554 678888774 22211 123445566655553 555544322 22 22334333 4899998
Q ss_pred Ccc
Q 019198 246 NLY 248 (344)
Q Consensus 246 Nlf 248 (344)
|-.
T Consensus 192 ~d~ 194 (281)
T cd06325 192 TDN 194 (281)
T ss_pred Cch
Confidence 743
No 138
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=21.70 E-value=4e+02 Score=23.95 Aligned_cols=60 Identities=22% Similarity=0.176 Sum_probs=33.3
Q ss_pred HHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHh--hCCCceeeeeeHhHHHHHHHhCCCCccEEecCC
Q 019198 175 YAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVAT--KYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPN 246 (344)
Q Consensus 175 ~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~--eyp~I~~~~~~vD~~~~~Lv~~P~~fdVIvt~N 246 (344)
.++.+|+..+..+||.+|+.--+ .+.+++.++ ..+++++.+..+.. +-. ++.||+|++.+
T Consensus 59 ~al~la~~~~~~~V~giD~s~~~-------l~~A~~~~~~~~l~~i~~~~~d~~~----~~~-~~~fDlV~~~~ 120 (187)
T PRK00107 59 PGIPLAIARPELKVTLVDSLGKK-------IAFLREVAAELGLKNVTVVHGRAEE----FGQ-EEKFDVVTSRA 120 (187)
T ss_pred HHHHHHHHCCCCeEEEEeCcHHH-------HHHHHHHHHHcCCCCEEEEeccHhh----CCC-CCCccEEEEcc
Confidence 46666766556789999965433 222333322 23345444443322 222 56899999854
No 139
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=21.67 E-value=3.1e+02 Score=26.07 Aligned_cols=88 Identities=13% Similarity=0.157 Sum_probs=42.8
Q ss_pred HHHHHHHHhcCCCceEEEecc-ch---hhhchHHHHHHHHHHHhhCCCcee--eeeeH---hHHHHHHHhCCCCccEEec
Q 019198 174 KYAFEYAYLNYRKKVTAVHKA-NI---MKLADGLFLESCREVATKYPSIKY--NEIIV---DNCCMQLVSKPEQFDVMVT 244 (344)
Q Consensus 174 r~AFe~A~~r~~~~Vt~v~Ka-Nv---lk~tdglf~~~~~eva~eyp~I~~--~~~~v---D~~~~~Lv~~P~~fdVIvt 244 (344)
+.|.++-.++|.+++-++.-. +. .....| |++.+++..-.+....+ ...-. -.+..+++..+..+|.|+|
T Consensus 165 ~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~G-f~~al~~~gi~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~ 243 (346)
T PRK10401 165 RMATRMLLNNGHQRIGYLSSSHGIEDDAMRRAG-WMSALKEQGIIPPESWIGTGTPDMQGGEAAMVELLGRNLQLTAVFA 243 (346)
T ss_pred HHHHHHHHHCCCCeEEEEeCCCcCcchHHHHHH-HHHHHHHcCCCCChhheecCCCChHHHHHHHHHHHcCCCCCcEEEE
Confidence 445555556678888877422 11 111122 55555442111111111 01111 1345567766668999999
Q ss_pred CCcchhhhhhhhhhhcCCCcc
Q 019198 245 PNLYGNLVSNTAAGIAGGTGV 265 (344)
Q Consensus 245 ~NlfGDIlSDlaa~l~GglGl 265 (344)
.| |.++--+....-..|+
T Consensus 244 ~n---d~~A~g~~~al~~~G~ 261 (346)
T PRK10401 244 YN---DNMAAGALTALKDNGI 261 (346)
T ss_pred CC---cHHHHHHHHHHHHcCC
Confidence 87 5555444333334444
No 140
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=21.44 E-value=3.2e+02 Score=25.95 Aligned_cols=20 Identities=15% Similarity=0.237 Sum_probs=14.9
Q ss_pred HHHHHHhCCCCccEEecCCc
Q 019198 228 CCMQLVSKPEQFDVMVTPNL 247 (344)
Q Consensus 228 ~~~~Lv~~P~~fdVIvt~Nl 247 (344)
+..++++.+..+|.|+|.|-
T Consensus 227 ~~~~~l~~~~~~~ai~~~nD 246 (343)
T PRK10727 227 AMTELLGRGRNFTAVACYND 246 (343)
T ss_pred HHHHHHhCCCCCCEEEEcCc
Confidence 45667777777999999773
No 141
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=21.28 E-value=91 Score=30.95 Aligned_cols=45 Identities=24% Similarity=0.333 Sum_probs=34.5
Q ss_pred CCceEEEeccchhhhchHHHHHHHHHHH-hhCCCceeeeeeHhHHHH
Q 019198 185 RKKVTAVHKANIMKLADGLFLESCREVA-TKYPSIKYNEIIVDNCCM 230 (344)
Q Consensus 185 ~~~Vt~v~KaNvlk~tdglf~~~~~eva-~eyp~I~~~~~~vD~~~~ 230 (344)
+.||.+|+ .||-.--..|-+|+++++. +.||.++.+..|||+-..
T Consensus 70 nSkvI~Ve-GnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~ 115 (393)
T KOG3877|consen 70 NSKVIVVE-GNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGN 115 (393)
T ss_pred cceEEEEe-CCcccCchhHHHHHHHHhCCcccccccccceeecccCc
Confidence 57898887 6776433457778888885 689999999999987643
No 142
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=21.21 E-value=3.7e+02 Score=25.37 Aligned_cols=20 Identities=15% Similarity=0.125 Sum_probs=14.3
Q ss_pred HHHHHHhCCCCccEEecCCc
Q 019198 228 CCMQLVSKPEQFDVMVTPNL 247 (344)
Q Consensus 228 ~~~~Lv~~P~~fdVIvt~Nl 247 (344)
...++++....+|.|+|.|=
T Consensus 233 ~~~~~l~~~~~~~ai~~~nd 252 (342)
T PRK10014 233 AITALLRHNPTISAVVCYNE 252 (342)
T ss_pred HHHHHHcCCCCCCEEEECCc
Confidence 34566666668999999873
No 143
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.97 E-value=5.2e+02 Score=22.93 Aligned_cols=75 Identities=13% Similarity=-0.020 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHhhC-CCce-----eee---eeHhHHHHHHHhCCCCccEE
Q 019198 172 IAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKY-PSIK-----YNE---IIVDNCCMQLVSKPEQFDVM 242 (344)
Q Consensus 172 iar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~ey-p~I~-----~~~---~~vD~~~~~Lv~~P~~fdVI 242 (344)
..+.+.++..+.|.++|.++.-..-.. ....+.+-|.+..+++ +.+. ... ...-....++.++...+|+|
T Consensus 104 ~~~~~~~~l~~~g~~~i~~l~~~~~~~-~~~~r~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 182 (268)
T cd06289 104 GARLATEHLISLGHRRIAFIGGLEDSS-TRRERLAGYRAALAEAGLPFDSELVVEGPPSRQGGAEAVAQLLDLPPRPTAI 182 (268)
T ss_pred HHHHHHHHHHHCCCCCEEEecCCcccc-chHHHHHHHHHHHHHcCCCCCchhEEecCcchhhHHHHHHHHHcCCCCCCEE
Confidence 345555666666778888774221111 1223334444443332 1111 111 11123344555554479999
Q ss_pred ecCCc
Q 019198 243 VTPNL 247 (344)
Q Consensus 243 vt~Nl 247 (344)
+|.|-
T Consensus 183 ~~~~~ 187 (268)
T cd06289 183 VCFND 187 (268)
T ss_pred EEcCc
Confidence 99874
No 144
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=20.92 E-value=2.3e+02 Score=25.62 Aligned_cols=75 Identities=21% Similarity=0.285 Sum_probs=44.5
Q ss_pred CCCceEEEEEcCCC--CcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCc-HHHHHHHHh--cCeEEEccccCCCCCCC
Q 019198 26 DGSPRAVTLIPGDG--IGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVP-QQVLDSIRK--NKVCLKGGLKTPVGGGV 100 (344)
Q Consensus 26 ~~~~~~I~vi~GDG--IGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp-~~~~~~~~~--~da~l~G~~~~p~~~~~ 100 (344)
..++.-++.+|||. +|.-++... |+..| |+.+++|. .+| ++.++.+++ .|++..-...++..+..
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~---l~~~G----~~vi~LG~---~vp~e~~v~~~~~~~pd~v~lS~~~~~~~~~~ 152 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTM---LRANG----FDVIDLGR---DVPIDTVVEKVKKEKPLMLTGSALMTTTMYGQ 152 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHH---HHhCC----cEEEECCC---CCCHHHHHHHHHHcCCCEEEEccccccCHHHH
Confidence 34577888899997 777666554 55555 55666754 455 555677765 55565555544432222
Q ss_pred CchhHHHHhh
Q 019198 101 SSLNVQLRKE 110 (344)
Q Consensus 101 ~s~~~~LR~~ 110 (344)
+.....||+.
T Consensus 153 ~~~i~~l~~~ 162 (197)
T TIGR02370 153 KDINDKLKEE 162 (197)
T ss_pred HHHHHHHHHc
Confidence 3334455554
No 145
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=20.76 E-value=2.2e+02 Score=25.68 Aligned_cols=74 Identities=18% Similarity=0.289 Sum_probs=42.7
Q ss_pred CCceEEEEEcCCC--CcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCc-HHHHHHHHh--cCeEEEccccCCCCCCCC
Q 019198 27 GSPRAVTLIPGDG--IGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVP-QQVLDSIRK--NKVCLKGGLKTPVGGGVS 101 (344)
Q Consensus 27 ~~~~~I~vi~GDG--IGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp-~~~~~~~~~--~da~l~G~~~~p~~~~~~ 101 (344)
+++.-++.+|||. +|--++.. +|+..|.+ .+++|. .+| ++..+.+++ .|++.+-...++..+..+
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~---~l~~~G~~----vi~lG~---~~p~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~ 151 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVAT---MLEANGFE----VIDLGR---DVPPEEFVEAVKEHKPDILGLSALMTTTMGGMK 151 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHH---HHHHCCCE----EEECCC---CCCHHHHHHHHHHcCCCEEEEeccccccHHHHH
Confidence 4567778889987 77776655 47777744 466764 455 566666665 455544444443222223
Q ss_pred chhHHHHhh
Q 019198 102 SLNVQLRKE 110 (344)
Q Consensus 102 s~~~~LR~~ 110 (344)
.....||+.
T Consensus 152 ~~i~~lr~~ 160 (201)
T cd02070 152 EVIEALKEA 160 (201)
T ss_pred HHHHHHHHC
Confidence 334556654
No 146
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=20.70 E-value=6e+02 Score=22.90 Aligned_cols=61 Identities=18% Similarity=0.275 Sum_probs=47.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHHH---h--cCeEEEccccCC
Q 019198 31 AVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIR---K--NKVCLKGGLKTP 95 (344)
Q Consensus 31 ~I~vi~GDGIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~~---~--~da~l~G~~~~p 95 (344)
+|++|=|---=-++|..+.++|+.+++++|..-+... .-|+...+-.+ + .++++-|+-+.-
T Consensus 4 ~V~IIMGS~SD~~~mk~Aa~~L~~fgi~ye~~VvSAH----RTPe~m~~ya~~a~~~g~~viIAgAGgAA 69 (162)
T COG0041 4 KVGIIMGSKSDWDTMKKAAEILEEFGVPYEVRVVSAH----RTPEKMFEYAEEAEERGVKVIIAGAGGAA 69 (162)
T ss_pred eEEEEecCcchHHHHHHHHHHHHHcCCCeEEEEEecc----CCHHHHHHHHHHHHHCCCeEEEecCcchh
Confidence 7899988777789999999999999999988877774 45766665553 2 456888886653
No 147
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=20.48 E-value=2.8e+02 Score=24.82 Aligned_cols=19 Identities=16% Similarity=0.326 Sum_probs=13.7
Q ss_pred HHHHHHhCCCCccEEecCC
Q 019198 228 CCMQLVSKPEQFDVMVTPN 246 (344)
Q Consensus 228 ~~~~Lv~~P~~fdVIvt~N 246 (344)
.+.+++++....|.|+|.|
T Consensus 168 ~~~~~l~~~~~~~ai~~~~ 186 (269)
T cd06275 168 AMQRLLAQPKRPTAVFCGN 186 (269)
T ss_pred HHHHHHcCCCCCcEEEECC
Confidence 4556666555789999988
No 148
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=20.46 E-value=1.3e+02 Score=23.99 Aligned_cols=28 Identities=7% Similarity=0.064 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCceEEEeccc
Q 019198 167 FCSERIAKYAFEYAYLNYRKKVTAVHKAN 195 (344)
Q Consensus 167 ~~~eRiar~AFe~A~~r~~~~Vt~v~KaN 195 (344)
+.+++++++|+.+|+.. ..+|+++|=.+
T Consensus 10 ~~~~~~l~~a~~la~~~-~~~v~ll~v~~ 37 (132)
T cd01988 10 NTARDLLELAAALARAQ-NGEIIPLNVIE 37 (132)
T ss_pred hhHHHHHHHHHHHhhcC-CCeEEEEEEEe
Confidence 56899999999999886 56787776443
No 149
>PRK10466 hybD hydrogenase 2 maturation endopeptidase; Provisional
Probab=20.46 E-value=1.8e+02 Score=25.51 Aligned_cols=48 Identities=19% Similarity=0.275 Sum_probs=32.5
Q ss_pred CCCcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHHHhcCeEEE-ccc
Q 019198 38 DGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRKNKVCLK-GGL 92 (344)
Q Consensus 38 DGIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~~~~da~l~-G~~ 92 (344)
||+|+++.++..+. ...+-+++-+|.| ..+.+.++.+..+|.+++ -++
T Consensus 16 DGvG~~va~~L~~~---~~~~~~v~vid~g----t~~~~ll~~l~~~d~vIiVDA~ 64 (164)
T PRK10466 16 EAIGVRIVEALEQR---YILPDYVEILDGG----TAGMELLGDMANRDHLIIADAI 64 (164)
T ss_pred CcHHHHHHHHHHHh---cCCCCCeEEEecc----ccHHHHHHHHhCCCEEEEEEec
Confidence 78999998776432 2344445556665 457888888888888755 444
No 150
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.34 E-value=6.3e+02 Score=22.63 Aligned_cols=80 Identities=10% Similarity=-0.004 Sum_probs=40.0
Q ss_pred eHHHHHHHHHHHHHHHHhc--CCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeee------eHhH---HHHHHH
Q 019198 165 TKFCSERIAKYAFEYAYLN--YRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEI------IVDN---CCMQLV 233 (344)
Q Consensus 165 Tr~~~eRiar~AFe~A~~r--~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~------~vD~---~~~~Lv 233 (344)
.....+..+++.++.+.+. |+++|-++.-..-.. +...+.+-|++..+++ +++.... ..+. .+.+++
T Consensus 103 ~~~~g~~~~~~l~~~~~~~~~g~~~i~~i~~~~~~~-~~~~r~~gf~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l 180 (277)
T cd06319 103 NYEGAYDLGKFLAAAMKAQGWADGKVGMVAIPQKRK-NGQKRTKGFKEAMKEA-GCDLAGIRQQKDFSYQETFDYTNDLL 180 (277)
T ss_pred cHHHHHHHHHHHHHHHHhhCCCCCcEEEEeccCCCc-cHHHHHHHHHHHHHhc-CCceEeeccCCCCCHHHHHHHHHHHH
Confidence 3556677888888877654 456777664211000 1112233334433332 1111111 1122 234667
Q ss_pred hCCCCccEEecCC
Q 019198 234 SKPEQFDVMVTPN 246 (344)
Q Consensus 234 ~~P~~fdVIvt~N 246 (344)
+....+|+|+|.|
T Consensus 181 ~~~~~~~ai~~~~ 193 (277)
T cd06319 181 TANPDIRAIWLQG 193 (277)
T ss_pred HhCCCCCEEEECC
Confidence 6656789999976
No 151
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=20.21 E-value=4.5e+02 Score=23.61 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=22.1
Q ss_pred CCceEEEeccchhhhchHHHHHHHHHHHhhCCCceee
Q 019198 185 RKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYN 221 (344)
Q Consensus 185 ~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~ 221 (344)
+++|++++=.. - ..+-.|++.+.+++++++.+.+.
T Consensus 131 ~~~v~l~~~~r-~-~~~~~~~~~l~~l~~~~~~~~~~ 165 (232)
T cd06212 131 DRPVRFFYGAR-T-ARDLFYLEEIAALGEKIPDFTFI 165 (232)
T ss_pred CCcEEEEEecc-c-hHHhccHHHHHHHHHhCCCEEEE
Confidence 45788876322 1 12446678888887778876654
No 152
>TIGR03863 PQQ_ABC_bind ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are putative substrate-binding proteins of an ABC transporter family that associates, in gene neighborhood and phylogenomic profile, with pyrroloquinoline-quinone (PQQ)-dependent degradation of certain alcohols, such as 2-phenylethanol in Pseudomonas putida U.
Probab=20.21 E-value=2.5e+02 Score=27.65 Aligned_cols=101 Identities=17% Similarity=0.280 Sum_probs=53.4
Q ss_pred EEEEeeHHHHHHHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeee-eeH---------hHHH
Q 019198 160 SLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNE-IIV---------DNCC 229 (344)
Q Consensus 160 ~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~-~~v---------D~~~ 229 (344)
.+...+.....-++++ +.+.+.|||.+++-.+.. +.-|.+.+++.++++ ++++-. ... |--.
T Consensus 107 r~~~~~~~~~~ala~~----~~~~g~kkvaii~~~~~~---g~~~~~~~~~~~~~~-G~~vv~~~~~~~~~~~~~~d~s~ 178 (347)
T TIGR03863 107 HTLPSRAMLADALAQY----LAAKRWRRILLIQGPLPA---DALYADAFRRSAKRF-GAKIVAERPFTFSGDPRRTDQSE 178 (347)
T ss_pred EecCChHhHHHHHHHH----HHHcCCCEEEEEeCCCcc---cHHHHHHHHHHHHHC-CCEEEEeEEeccCCchhhhhccc
Confidence 3334444555555554 444467899999876654 344567777766665 333221 111 1110
Q ss_pred -HHHHhCCCCccEEecCCcchhhhhh------hhhhhcCCCccccCc
Q 019198 230 -MQLVSKPEQFDVMVTPNLYGNLVSN------TAAGIAGGTGVMPGA 269 (344)
Q Consensus 230 -~~Lv~~P~~fdVIvt~NlfGDIlSD------laa~l~GglGl~pSa 269 (344)
..+.+. .+.|||+..+..||..-. ....+.|.-|+.++.
T Consensus 179 ~~~~~~~-s~pDvv~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~~ 224 (347)
T TIGR03863 179 VPLFTQG-ADYDVVVVADEAGEFARYLPYATWLPRPVAGSAGLVPTA 224 (347)
T ss_pred CceeecC-CCCCEEEEecchhhHhhhcccccccccccccccCccccc
Confidence 233444 788999987774442211 122355666666544
No 153
>PRK08051 fre FMN reductase; Validated
Probab=20.01 E-value=6.3e+02 Score=22.86 Aligned_cols=37 Identities=14% Similarity=0.166 Sum_probs=24.8
Q ss_pred CCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeee
Q 019198 185 RKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEI 223 (344)
Q Consensus 185 ~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~ 223 (344)
.++|++++=..-- .+-.|.+.+.+++++||+..+...
T Consensus 130 ~~~v~l~~g~r~~--~~~~~~~el~~l~~~~~~~~~~~~ 166 (232)
T PRK08051 130 NRPITLYWGGREE--DHLYDLDELEALALKHPNLHFVPV 166 (232)
T ss_pred CCcEEEEEEeccH--HHhhhhHHHHHHHHHCCCcEEEEE
Confidence 4567776633322 355678888899999988776543
Done!