Query 019198
Match_columns 344
No_of_seqs 144 out of 1277
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 12:24:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019198.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019198hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3blx_A Isocitrate dehydrogenas 100.0 8E-113 3E-117 833.2 26.9 328 15-343 2-346 (349)
2 1x0l_A Homoisocitrate dehydrog 100.0 2E-111 7E-116 819.6 32.9 310 30-343 2-330 (333)
3 3blx_B Isocitrate dehydrogenas 100.0 4E-111 1E-115 822.5 29.7 320 23-343 15-354 (354)
4 3ty4_A Probable homoisocitrate 100.0 2E-109 5E-114 814.0 33.0 314 28-344 9-365 (366)
5 3flk_A Tartrate dehydrogenase/ 100.0 1E-109 5E-114 815.1 29.8 314 28-343 4-360 (364)
6 3u1h_A 3-isopropylmalate dehyd 100.0 6E-108 2E-112 806.3 31.3 312 28-343 22-376 (390)
7 3udu_A 3-isopropylmalate dehyd 100.0 5E-108 2E-112 802.0 30.1 310 29-343 6-355 (361)
8 2d1c_A Isocitrate dehydrogenas 100.0 2E-107 5E-112 821.6 33.1 314 29-343 19-355 (496)
9 3vmk_A 3-isopropylmalate dehyd 100.0 2E-107 5E-112 802.1 30.6 313 27-343 11-371 (375)
10 1wpw_A 3-isopropylmalate dehyd 100.0 2E-107 7E-112 792.3 30.6 307 30-344 2-336 (336)
11 2y3z_A 3-isopropylmalate dehyd 100.0 3E-107 1E-111 796.8 29.3 309 29-343 3-347 (359)
12 1vlc_A 3-isopropylmalate dehyd 100.0 1E-107 5E-112 800.1 26.8 312 28-343 11-362 (366)
13 1cnz_A IPMDH, IMDH, protein (3 100.0 1E-106 3E-111 795.1 30.1 311 29-343 4-359 (363)
14 3dms_A Isocitrate dehydrogenas 100.0 5E-107 2E-111 811.3 27.2 315 28-344 35-427 (427)
15 3r8w_A 3-isopropylmalate dehyd 100.0 8E-107 3E-111 802.5 28.2 313 28-344 41-398 (405)
16 1w0d_A 3-isopropylmalate dehyd 100.0 3E-106 1E-110 784.7 31.5 305 30-343 2-337 (337)
17 2e0c_A 409AA long hypothetical 100.0 2E-106 8E-111 802.8 29.6 315 28-344 23-407 (409)
18 2iv0_A Isocitrate dehydrogenas 100.0 3E-106 9E-111 802.8 29.6 314 28-343 26-409 (412)
19 1a05_A IPMDH, IMDH, 3-isopropy 100.0 2E-105 5E-110 785.6 30.3 311 30-344 2-355 (358)
20 2d4v_A Isocitrate dehydrogenas 100.0 2E-105 9E-110 798.6 30.7 314 28-343 25-429 (429)
21 1hqs_A Isocitrate dehydrogenas 100.0 2E-105 8E-110 798.1 28.6 315 28-344 18-423 (423)
22 1tyo_A Isocitrate dehydrogenas 100.0 9E-105 3E-109 795.8 30.2 313 28-343 34-421 (435)
23 3us8_A Isocitrate dehydrogenas 100.0 1.6E-99 6E-104 756.9 23.0 311 27-343 28-421 (427)
24 2uxq_A Isocitrate dehydrogenas 100.0 2E-98 7E-103 745.7 23.4 311 28-343 5-397 (402)
25 1lwd_A Isocitrate dehydrogenas 100.0 2.6E-96 9E-101 732.8 23.0 312 27-343 6-406 (413)
26 1zor_A Isocitrate dehydrogenas 100.0 7.5E-96 3E-100 727.0 24.0 311 28-343 6-395 (399)
27 4aoy_A Isocitrate dehydrogenas 100.0 1.6E-95 6E-100 723.3 25.2 312 28-344 6-399 (402)
28 2qfy_A Isocitrate dehydrogenas 100.0 2.7E-94 9.3E-99 720.5 19.4 314 25-343 18-419 (427)
29 3lxy_A 4-hydroxythreonine-4-ph 91.3 0.78 2.7E-05 44.2 9.3 127 163-297 179-327 (334)
30 3cis_A Uncharacterized protein 86.4 18 0.00063 32.6 17.0 155 56-246 100-275 (309)
31 2hi1_A 4-hydroxythreonine-4-ph 82.1 1.3 4.4E-05 42.6 4.7 120 163-297 181-328 (330)
32 1vi1_A Fatty acid/phospholipid 79.5 11 0.00039 35.9 10.5 137 164-312 148-328 (345)
33 1yxo_A 4-hydroxythreonine-4-ph 78.5 0.97 3.3E-05 43.5 2.5 121 163-297 174-322 (328)
34 1itw_A Isocitrate dehydrogenas 75.4 56 0.0019 33.8 14.3 174 150-327 447-652 (741)
35 2b0t_A NADP isocitrate dehydro 75.3 56 0.0019 33.8 14.3 174 150-327 443-648 (738)
36 3l49_A ABC sugar (ribose) tran 73.5 8.4 0.00029 34.0 7.3 74 172-246 110-199 (291)
37 3ksm_A ABC-type sugar transpor 68.0 14 0.00047 32.1 7.3 74 172-246 110-195 (276)
38 1u7n_A Fatty acid/phospholipid 66.1 44 0.0015 31.6 10.9 123 165-297 151-317 (336)
39 4aty_A Terephthalate 1,2-CIS-d 65.0 3.7 0.00013 39.5 3.1 123 163-297 196-340 (349)
40 2af4_C Phosphate acetyltransfe 62.5 35 0.0012 32.2 9.5 98 164-261 178-290 (333)
41 3dlo_A Universal stress protei 58.4 20 0.00067 29.2 6.1 27 166-193 35-61 (155)
42 1td9_A Phosphate acetyltransfe 56.9 50 0.0017 31.1 9.4 99 164-262 179-291 (329)
43 2fn9_A Ribose ABC transporter, 56.3 48 0.0016 29.0 8.8 80 165-246 107-199 (290)
44 3l6u_A ABC-type sugar transpor 56.0 30 0.001 30.2 7.4 181 27-246 6-203 (293)
45 3miz_A Putative transcriptiona 55.7 57 0.002 28.8 9.3 175 27-246 11-205 (301)
46 2rjo_A Twin-arginine transloca 55.4 25 0.00086 31.8 6.9 73 172-246 121-205 (332)
47 3tsn_A 4-hydroxythreonine-4-ph 55.0 7.2 0.00024 38.0 3.2 67 223-297 282-362 (367)
48 4hc4_A Protein arginine N-meth 54.6 14 0.00046 35.9 5.1 60 180-253 101-163 (376)
49 4azs_A Methyltransferase WBDD; 53.5 33 0.0011 34.6 8.0 66 175-249 80-145 (569)
50 3o74_A Fructose transport syst 53.1 43 0.0015 28.8 7.8 90 171-265 106-204 (272)
51 1e2b_A Enzyme IIB-cellobiose; 51.6 65 0.0022 25.2 7.9 69 29-112 3-72 (106)
52 3mt0_A Uncharacterized protein 49.5 1.4E+02 0.0047 26.4 13.0 122 39-194 47-178 (290)
53 4aty_A Terephthalate 1,2-CIS-d 45.8 12 0.00041 35.9 3.1 22 28-49 7-30 (349)
54 2x7x_A Sensor protein; transfe 45.8 43 0.0015 30.1 6.9 74 173-247 114-197 (325)
55 3kuu_A Phosphoribosylaminoimid 45.7 55 0.0019 28.5 7.0 67 24-94 7-78 (174)
56 3d8u_A PURR transcriptional re 45.1 1E+02 0.0035 26.4 9.0 74 171-246 106-189 (275)
57 1gud_A ALBP, D-allose-binding 45.1 59 0.002 28.6 7.5 72 173-246 118-201 (288)
58 3olq_A Universal stress protei 43.6 1.7E+02 0.006 25.8 11.8 26 168-193 175-201 (319)
59 2ioy_A Periplasmic sugar-bindi 42.7 75 0.0026 27.7 7.8 72 173-246 109-191 (283)
60 2fhp_A Methylase, putative; al 42.6 83 0.0028 25.4 7.6 66 176-249 59-127 (187)
61 3fdx_A Putative filament prote 42.3 15 0.00051 28.8 2.7 26 169-195 16-41 (143)
62 3gbv_A Putative LACI-family tr 42.3 1.7E+02 0.0058 25.3 16.9 65 27-94 6-80 (304)
63 3uf6_A LMO1369 protein; struct 41.8 1.3E+02 0.0045 27.9 9.6 201 27-261 16-252 (291)
64 3tb6_A Arabinose metabolism tr 41.8 71 0.0024 27.7 7.5 63 29-94 15-82 (298)
65 1vmi_A Putative phosphate acet 41.1 63 0.0022 30.8 7.4 130 164-297 185-333 (355)
66 1tjy_A Sugar transport protein 41.0 1.3E+02 0.0043 26.9 9.2 74 172-246 112-197 (316)
67 1r5j_A Putative phosphotransac 40.4 1.1E+02 0.0038 28.6 9.0 99 164-262 183-295 (337)
68 3quf_A Extracellular solute-bi 39.9 68 0.0023 29.7 7.4 57 185-246 29-91 (414)
69 3egc_A Putative ribose operon 39.4 1.3E+02 0.0043 26.2 8.8 175 27-246 6-194 (291)
70 2zqe_A MUTS2 protein; alpha/be 39.4 68 0.0023 24.0 6.0 55 160-219 8-62 (83)
71 3i3v_A Probable secreted solut 39.3 80 0.0027 29.1 7.8 61 185-245 7-71 (405)
72 3d02_A Putative LACI-type tran 39.3 81 0.0028 27.5 7.5 74 171-246 111-197 (303)
73 2h3h_A Sugar ABC transporter, 38.8 1.3E+02 0.0043 26.7 8.8 73 173-247 109-191 (313)
74 2q62_A ARSH; alpha/beta, flavo 38.7 97 0.0033 27.8 8.0 81 26-113 31-123 (247)
75 3k01_A Acarbose/maltose bindin 38.6 29 0.001 32.3 4.6 60 185-246 27-92 (412)
76 4grd_A N5-CAIR mutase, phospho 38.4 77 0.0026 27.6 6.8 63 28-94 11-78 (173)
77 3k4h_A Putative transcriptiona 36.9 1.9E+02 0.0064 24.9 9.5 74 172-246 118-200 (292)
78 3cs3_A Sugar-binding transcrip 36.2 1.9E+02 0.0065 24.9 9.4 59 27-93 6-67 (277)
79 3g1w_A Sugar ABC transporter; 35.6 1E+02 0.0035 27.0 7.5 74 172-247 112-196 (305)
80 3c3k_A Alanine racemase; struc 34.4 1.5E+02 0.0051 25.8 8.4 62 27-92 6-73 (285)
81 3brs_A Periplasmic binding pro 34.3 1.3E+02 0.0046 25.9 8.1 73 172-246 116-198 (289)
82 3gv0_A Transcriptional regulat 34.1 1.2E+02 0.004 26.5 7.6 74 171-246 113-196 (288)
83 3qk7_A Transcriptional regulat 34.0 1.5E+02 0.0052 25.9 8.5 64 27-94 4-76 (294)
84 3jy6_A Transcriptional regulat 33.4 52 0.0018 28.6 5.1 75 171-246 109-189 (276)
85 1xmp_A PURE, phosphoribosylami 33.3 89 0.003 27.1 6.3 63 28-94 10-77 (170)
86 3cis_A Uncharacterized protein 33.2 88 0.003 27.9 6.8 26 166-192 29-54 (309)
87 1dbq_A Purine repressor; trans 33.0 1.8E+02 0.0061 25.1 8.6 64 27-93 5-73 (289)
88 3lxy_A 4-hydroxythreonine-4-ph 32.9 25 0.00085 33.7 3.1 21 28-48 7-29 (334)
89 1tvm_A PTS system, galactitol- 32.8 1.3E+02 0.0045 23.5 7.0 57 28-92 20-78 (113)
90 3rot_A ABC sugar transporter, 32.8 1.8E+02 0.0063 25.3 8.8 73 172-246 115-196 (297)
91 3lp6_A Phosphoribosylaminoimid 32.5 97 0.0033 26.9 6.5 62 29-94 7-73 (174)
92 3ors_A N5-carboxyaminoimidazol 32.4 1E+02 0.0034 26.5 6.5 62 29-94 3-69 (163)
93 3m9w_A D-xylose-binding peripl 31.6 2.3E+02 0.0078 24.8 9.3 63 29-94 2-69 (313)
94 3ab8_A Putative uncharacterize 31.6 2.5E+02 0.0085 24.1 17.6 153 55-246 86-242 (268)
95 3k9c_A Transcriptional regulat 31.5 1.6E+02 0.0054 25.7 8.1 169 28-246 11-193 (289)
96 4b4k_A N5-carboxyaminoimidazol 31.4 97 0.0033 27.1 6.3 61 30-94 23-88 (181)
97 3e3m_A Transcriptional regulat 31.4 1.6E+02 0.0056 26.6 8.4 75 171-246 173-258 (355)
98 3uor_A ABC transporter sugar b 31.3 80 0.0027 30.1 6.5 58 185-246 29-91 (458)
99 3brq_A HTH-type transcriptiona 31.1 2.3E+02 0.0078 24.3 9.0 63 27-93 17-87 (296)
100 3bbl_A Regulatory protein of L 30.3 1.4E+02 0.0049 25.9 7.6 63 28-93 3-74 (287)
101 3gyb_A Transcriptional regulat 30.2 1.4E+02 0.0049 25.6 7.5 168 27-246 3-184 (280)
102 2iks_A DNA-binding transcripti 29.8 2.7E+02 0.0092 24.1 9.3 72 172-246 125-205 (293)
103 1elj_A Maltodextrin-binding pr 29.1 60 0.0021 29.8 5.0 44 202-245 20-66 (381)
104 3qd7_X Uncharacterized protein 29.0 1.5E+02 0.005 24.5 6.8 62 159-220 50-112 (137)
105 3tsn_A 4-hydroxythreonine-4-ph 28.9 36 0.0012 33.0 3.5 20 29-48 4-25 (367)
106 1u11_A PURE (N5-carboxyaminoim 28.8 1.2E+02 0.0041 26.5 6.5 62 29-94 21-87 (182)
107 3g85_A Transcriptional regulat 28.7 1.4E+02 0.0048 25.8 7.2 172 27-246 9-196 (289)
108 3c9h_A ABC transporter, substr 28.5 65 0.0022 29.4 5.1 57 185-246 33-95 (355)
109 2qh8_A Uncharacterized protein 27.8 2E+02 0.007 25.3 8.3 67 174-246 127-201 (302)
110 3oow_A Phosphoribosylaminoimid 27.8 1.4E+02 0.0047 25.8 6.6 61 30-94 6-71 (166)
111 3dbi_A Sugar-binding transcrip 26.4 2.5E+02 0.0084 25.1 8.6 73 172-246 168-250 (338)
112 3evi_A Phosducin-like protein 26.3 64 0.0022 25.4 4.0 53 187-246 24-76 (118)
113 3cfx_A UPF0100 protein MA_0280 26.1 1.1E+02 0.0036 27.4 6.0 46 202-247 17-64 (296)
114 3kke_A LACI family transcripti 25.8 2.5E+02 0.0086 24.5 8.4 65 27-94 13-82 (303)
115 3nbm_A PTS system, lactose-spe 25.4 2.4E+02 0.0082 22.0 7.3 57 28-92 5-62 (108)
116 3en0_A Cyanophycinase; serine 25.4 1.4E+02 0.0048 27.7 6.7 61 29-91 56-118 (291)
117 2b3f_A Glucose-binding protein 25.3 1E+02 0.0035 28.5 5.9 45 201-245 14-66 (400)
118 3clk_A Transcription regulator 25.0 1.7E+02 0.0059 25.3 7.1 64 28-93 7-75 (290)
119 3trh_A Phosphoribosylaminoimid 24.6 1.5E+02 0.0051 25.6 6.2 61 30-94 7-72 (169)
120 1ws6_A Methyltransferase; stru 24.5 2.3E+02 0.0078 22.1 7.2 65 176-249 56-121 (171)
121 3rg8_A Phosphoribosylaminoimid 24.4 1.4E+02 0.0049 25.4 6.0 61 30-94 3-69 (159)
122 2fvy_A D-galactose-binding per 24.3 3.1E+02 0.011 23.6 8.7 80 165-246 112-211 (309)
123 3bvr_A NOTI restriction endonu 24.3 20 0.00068 34.2 0.6 29 234-262 71-101 (383)
124 3kjx_A Transcriptional regulat 24.1 1.7E+02 0.0058 26.3 7.0 64 27-93 66-134 (344)
125 1yxo_A 4-hydroxythreonine-4-ph 24.0 38 0.0013 32.4 2.6 18 31-48 4-23 (328)
126 3lft_A Uncharacterized protein 24.0 2.4E+02 0.0081 24.7 7.9 59 29-90 2-69 (295)
127 3cij_A UPF0100 protein AF_0094 23.9 1.2E+02 0.0042 26.8 6.0 46 202-247 17-64 (295)
128 2hsg_A Glucose-resistance amyl 23.5 1.7E+02 0.0058 26.1 6.9 63 27-92 58-125 (332)
129 4gqo_A LMO0859 protein; virule 23.2 1.3E+02 0.0044 27.9 6.1 59 184-244 28-92 (433)
130 3s3t_A Nucleotide-binding prot 23.2 74 0.0025 24.6 3.8 27 166-193 15-41 (146)
131 3hs3_A Ribose operon repressor 23.0 1.8E+02 0.0062 25.1 6.8 72 172-246 110-186 (277)
132 3h5t_A Transcriptional regulat 22.9 1.7E+02 0.0058 26.5 6.9 19 228-246 258-276 (366)
133 2h0a_A TTHA0807, transcription 22.7 2.6E+02 0.009 23.7 7.8 73 172-246 101-188 (276)
134 3hgm_A Universal stress protei 22.5 78 0.0027 24.4 3.9 28 167-195 13-40 (147)
135 1ixc_A CBNR, LYSR-type regulat 22.3 2.9E+02 0.01 23.4 8.0 56 185-245 90-147 (294)
136 1nha_A TFIIF-alpha, transcript 22.3 41 0.0014 25.8 2.0 35 309-343 21-62 (82)
137 3hem_A Cyclopropane-fatty-acyl 22.2 1.8E+02 0.0061 25.8 6.7 62 175-251 86-150 (302)
138 2rgy_A Transcriptional regulat 22.1 3.8E+02 0.013 23.1 9.0 62 28-93 7-77 (290)
139 2i2x_B MTAC, methyltransferase 21.7 2.9E+02 0.0098 24.6 8.0 75 27-110 123-201 (258)
140 3cfz_A UPF0100 protein MJ1186; 21.6 1.5E+02 0.005 26.4 6.0 46 202-247 17-64 (292)
141 2heu_A Sugar ABC transporter, 21.6 1.1E+02 0.0037 28.3 5.2 57 186-245 19-79 (401)
142 3huu_A Transcription regulator 21.2 3E+02 0.01 24.0 8.0 65 27-94 20-94 (305)
143 1jx6_A LUXP protein; protein-l 20.5 1.9E+02 0.0065 25.7 6.6 66 26-92 40-112 (342)
144 4aq4_A SN-glycerol-3-phosphate 20.5 1.3E+02 0.0044 27.5 5.5 44 203-246 21-70 (419)
145 2fep_A Catabolite control prot 20.4 3.2E+02 0.011 23.6 7.9 63 27-92 14-81 (289)
146 1yco_A Branched-chain phosphot 20.4 4.9E+02 0.017 23.7 11.5 227 30-294 2-268 (279)
147 1lxj_A YBL001C, hypothetical 1 20.3 76 0.0026 25.0 3.3 55 31-89 9-68 (104)
148 3p9n_A Possible methyltransfer 20.2 3.5E+02 0.012 21.9 8.6 59 183-250 65-125 (189)
No 1
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A*
Probab=100.00 E-value=8.3e-113 Score=833.24 Aligned_cols=328 Identities=47% Similarity=0.736 Sum_probs=307.1
Q ss_pred hccccc-CCCCCCCCceEEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEeeCC-CCCCcHHHHHHHHhcCeEEEccc
Q 019198 15 TRSVTY-MPRPGDGSPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD-MKRVPQQVLDSIRKNKVCLKGGL 92 (344)
Q Consensus 15 ~~~~~~-~~~~~~~~~~~I~vi~GDGIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~-g~~lp~~~~~~~~~~da~l~G~~ 92 (344)
|+|++. +++++|+++++|+|||||||||||++++++||++++++++|+++++|.. |+++|++++++|+++|++||||+
T Consensus 2 ~~~~~~~~~~~~~~~~~~I~vipGDGIGpEv~~~~~~Vl~a~~~~i~~~~~~~G~~~g~~lp~~tl~~~~~~da~l~Gav 81 (349)
T 3blx_A 2 TAAQAERTLPKKYGGRFTVTLIPGDGVGKEITDSVRTIFEAENIPIDWETINIKQTDHKEGVYEAVESLKRNKIGLKGLW 81 (349)
T ss_dssp -----------CCCCCEEEEEEEESHHHHHHHHHHHHHHHHTTCSEEEEECCCSSTTCHHHHHHHHHHHHHHSEEEEEEC
T ss_pred cccccccCCccccCCceEEEEECCCCcCHHHHHHHHHHHHHcCCCeEEEEEecCcccCCcCcHHHHHHHHHCCEEEECCc
Confidence 456663 4567899999999999999999999999999999999999999999986 99999999999999999999999
Q ss_pred cCCCC-CCCCchhHHHHhhcCcEEEEEEeecCCCCCCCcccccEEEEecCCceeeecccceeeCCEEEEEEEeeHHHHHH
Q 019198 93 KTPVG-GGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSER 171 (344)
Q Consensus 93 ~~p~~-~~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~~~vDivIvREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eR 171 (344)
++|.. ++++|+|+.|||+||||+|+|||+++||+++|++++|++||||||||+|+|.|++..+++++++++|||+++||
T Consensus 82 ~~P~~~~~~~s~~l~lR~~ldlyan~RP~~~~pg~~~~~~~vD~vivREnteg~Y~g~e~~~~~gva~~~~~~T~~~~eR 161 (349)
T 3blx_A 82 HTPADQTGHGSLNVALRKQLDIYANVALFKSLKGVKTRIPDIDLIVIRENTEGEFSGLEHESVPGVVESLKVMTRPKTER 161 (349)
T ss_dssp CSHHHHHTCHHHHHHHHHTSCEEEEEEEEECCTTCCCSSCSCEEEEEEECSSGGGGCEEEECSTTEEEEEEEEEHHHHHH
T ss_pred cCCCCCCCccCchHHHHHHcCCEEEEEEEeccCCCCCCCCCcCEEEEecCCCCcEeCCceeccCCeEEEEEEeCHHHHHH
Confidence 99953 46778999999999999999999999999999999999999999999999999887788999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHH-hhCCCceeeeeeHhHHHHHHHhCCCCccEEecCCcchh
Q 019198 172 IAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVA-TKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGN 250 (344)
Q Consensus 172 iar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva-~eyp~I~~~~~~vD~~~~~Lv~~P~~fdVIvt~NlfGD 250 (344)
|+|+||++|++|+|||||+|||+||||+|||||+++|+|++ ++||+|+++|+|||+|+||||++|++||||||+|||||
T Consensus 162 iar~AF~~A~~r~rkkVt~v~KaNvlk~sdglf~~~~~eva~~eyp~i~~~~~~vD~~~~qlv~~P~~FDVivt~NlfGD 241 (349)
T 3blx_A 162 IARFAFDFAKKYNRKSVTAVHKANIMKLGDGLFRNIITEIGQKEYPDIDVSSIIVDNASMQAVAKPHQFDVLVTPSMYGT 241 (349)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECTTTSTTHHHHHHHHHHHHHHHHCTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHH
T ss_pred HHHHHHHHHHhcCCCcEEEEeCCccchhhHHHHHHHHHHHHHhhCCCeeEEEeeHHHHHHHHhhCcccccEEEECCcchH
Confidence 99999999999988999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred hhhhhhhhhcCCCccccCcccCC-------------CcCccCcCCCChhHHHHHHHHHhhhcCchHHHHHHHHHHHHHHH
Q 019198 251 LVSNTAAGIAGGTGVMPGAGNVG-------------NEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVIS 317 (344)
Q Consensus 251 IlSDlaa~l~GglGl~pSa~nig-------------APdiaGk~iANP~a~Ils~ammL~~lg~~~~a~~i~~Av~~~l~ 317 (344)
||||++|+++||+||+||+ |+| ||||||||+|||+|+|||++|||+|||+.++|++|++||.++++
T Consensus 242 IlSD~aa~l~GslGl~pSa-nig~~~a~fEpvH~GSAPdiAGk~iANP~A~IlS~ammL~~lg~~~~A~~Ie~Av~~~l~ 320 (349)
T 3blx_A 242 ILGNIGAALIGGPGLVAGA-NFGRDYAVFEPGSRHVGLDIKGQNVANPTAMILSSTLMLNHLGLNEYATRISKAVHETIA 320 (349)
T ss_dssp HHHHHHHHHHTCGGGCEEE-EEESSCEEECCTTTTSCC--CCTTCSCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCcccceEE-EECCCceeEcCCCCCchhhhcCCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 997 89999999999999999999999999999999999999999999
Q ss_pred cCcccCCCCCCCCcHHHHHHHHHHhc
Q 019198 318 EEKYRTKDLGGGCTTQQIVDAVIANL 343 (344)
Q Consensus 318 ~g~~~T~DlgG~~sT~e~~~aV~~~l 343 (344)
+|+++|+||||++||+||+|+|+++|
T Consensus 321 ~G~~~T~Dlgg~~~T~e~~daI~~~l 346 (349)
T 3blx_A 321 EGKHTTRDIGGSSSTTDFTNEIINKL 346 (349)
T ss_dssp SSSSCBGGGTCCBCHHHHHHHHHHHH
T ss_pred cCCccCCCcCCCCCHHHHHHHHHHHh
Confidence 99779999999999999999999987
No 2
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A
Probab=100.00 E-value=2e-111 Score=819.57 Aligned_cols=310 Identities=40% Similarity=0.600 Sum_probs=302.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEeeCC-----CCCCcHHHHHHHHhcCeEEEccccCCC--CCCCCc
Q 019198 30 RAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD-----MKRVPQQVLDSIRKNKVCLKGGLKTPV--GGGVSS 102 (344)
Q Consensus 30 ~~I~vi~GDGIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~-----g~~lp~~~~~~~~~~da~l~G~~~~p~--~~~~~s 102 (344)
|+|+|||||||||||++++++||++++++++|+++++|++ |+++|++++++||++|++||||+++|. ..+++|
T Consensus 2 ~~I~vipGDGIGpEv~~~a~~vl~a~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~l~Gav~~P~~~~~~~~s 81 (333)
T 1x0l_A 2 YRICLIEGDGIGHEVIPAARRVLEATGLPLEFVEAEAGWETFERRGTSVPEETVEKILSCHATLFGAATSPTRKVPGFFG 81 (333)
T ss_dssp EEEEEEEESTTHHHHHHHHHHHHHTTTCCEEEEEECCSHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCCSSCCTTCCC
T ss_pred cEEEEECCCCcCHHHHHHHHHHHHHcCCCeEEEEEecchHHHHhhCCcCcHHHHHHHHHCCEEEECCccCCCCCCcCccC
Confidence 7999999999999999999999999999999999999976 999999999999999999999999996 456789
Q ss_pred hhHHHHhhcCcEEEEEEeecCCCCCCCcccccEEEEecCCceeeecccceeeCCEEEEEEEeeHHHHHHHHHHHHHHHHh
Q 019198 103 LNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYL 182 (344)
Q Consensus 103 ~~~~LR~~ldlyanvRP~~~~pg~~~~~~~vDivIvREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~~ 182 (344)
+|++|||+||||+|+|||+++| +++|++++|++||||||||+|+|.+++ .+++++++++|||+++|||+|+||++|++
T Consensus 82 ~~l~lR~~ldlyan~RP~~~~p-~~s~~~~vD~vivREnteg~Y~g~~~~-~~~~a~~~~~~T~~~~eRiar~AF~~A~~ 159 (333)
T 1x0l_A 82 AIRYLRRRLDLYANVRPAKSRP-VPGSRPGVDLVIVRENTEGLYVEQERR-YLDVAIADAVISKKASERIGRAALRIAEG 159 (333)
T ss_dssp HHHHHHHHTTCCEEEEEEECCS-STTCCSSCEEEEEEECGGGTCCCCEEE-ETTEEEEEEEEEHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHcCCEEEEEEEeecc-CCCCCCCCCEEEEecCccceecccccc-CCCeEEEEEEecHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999 999999999999999999999999887 67899999999999999999999999999
Q ss_pred cCCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeeeHhHHHHHHHhCCCCccEEecCCcchhhhhhhhhhhcCC
Q 019198 183 NYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGG 262 (344)
Q Consensus 183 r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~vD~~~~~Lv~~P~~fdVIvt~NlfGDIlSDlaa~l~Gg 262 (344)
|+|||||+|||+||||+|||||+++|+|++++||+|+++|++||+++||||++|++||||||+|||||||||++|+++||
T Consensus 160 r~rkkvt~v~KaNvlk~t~glf~~~~~eva~eyp~I~~~~~~vD~~~m~lv~~P~~FDVivt~NlfGDIlSD~aa~l~Gs 239 (333)
T 1x0l_A 160 RPRKTLHIAHKANVLPLTQGLFLDTVKEVAKDFPLVNVQDIIVDNCAMQLVMRPERFDVIVTTNLLGDILSDLAAGLVGG 239 (333)
T ss_dssp STTCEEEEEECTTTCTTHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTC
T ss_pred cCCCeEEEEecCccchhhhHHHHHHHHHHHHHCCCceEEEEEHHHHHHHHhhCcccceEEEEcCccchhHhHHHHhhcCC
Confidence 98899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCcccCC------------CcCccCcCCCChhHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHcCcccCCCCCCCC
Q 019198 263 TGVMPGAGNVG------------NEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEEKYRTKDLGGGC 330 (344)
Q Consensus 263 lGl~pSa~nig------------APdiaGk~iANP~a~Ils~ammL~~lg~~~~a~~i~~Av~~~l~~g~~~T~DlgG~~ 330 (344)
+||+||+ |+| ||||||||+|||+|+|||++|||+|||+.++|++|++||.+++++| ++|+||||++
T Consensus 240 lGl~psa-nig~~~a~fEp~HGSAPdiaGk~iANP~A~IlS~ammL~~lg~~~~A~~Ie~Av~~~l~~g-~~T~DlgG~~ 317 (333)
T 1x0l_A 240 LGLAPSG-NIGDTTAVFEPVHGSAPDIAGKGIANPTAAILSAAMMLDYLGEKEAAKRVEKAVDLVLERG-PRTPDLGGDA 317 (333)
T ss_dssp STTCEEE-EECSSCEEEEESSCCCGGGTTSSCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-CCCGGGTCCC
T ss_pred cccceee-EECCCceEEeCCCCChhhhcCCCCcCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHcC-CccCccCCCC
Confidence 9999999 998 9999999999999999999999999999999999999999999999 6999999999
Q ss_pred cHHHHHHHHHHhc
Q 019198 331 TTQQIVDAVIANL 343 (344)
Q Consensus 331 sT~e~~~aV~~~l 343 (344)
||+||+|+|+++|
T Consensus 318 ~T~e~~daV~~~l 330 (333)
T 1x0l_A 318 TTEAFTEAVVEAL 330 (333)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999999987
No 3
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B
Probab=100.00 E-value=4.3e-111 Score=822.51 Aligned_cols=320 Identities=43% Similarity=0.729 Sum_probs=307.4
Q ss_pred CCCCCCceEEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEeeCC----CCCCcHHHHHHHHhcCeEEEccccCCCCC
Q 019198 23 RPGDGSPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD----MKRVPQQVLDSIRKNKVCLKGGLKTPVGG 98 (344)
Q Consensus 23 ~~~~~~~~~I~vi~GDGIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~----g~~lp~~~~~~~~~~da~l~G~~~~p~~~ 98 (344)
.++|+++++|+|||||||||||++++++||++++++++|+++++|.+ |+++|++++++|+++|++||||+++|...
T Consensus 15 ~~~~~~~~~I~vipGDGIGpEv~~~~~~Vl~a~~~~i~~~~~~~G~~~~~~g~~lp~~tl~~~~~~da~l~Gav~~P~~~ 94 (354)
T 3blx_B 15 PNPSTGKYTVSFIEGDGIGPEISKSVKKIFSAANVPIEWESCDVSPIFVNGLTTIPDPAVQSITKNLVALKGPLATPIGK 94 (354)
T ss_dssp CCTTTSCEECBCCCCSTTHHHHHHHHHHHHHTTTCSEECCCCCCCCEEETTEEECCHHHHHHHHHHSEEEECCCCCC---
T ss_pred chhcCCceEEEEECCCCcCHHHHHHHHHHHHHcCCCeEEEEEEechhhhhhCCCCCHHHHHHHHHCCEEEECCccCCCCc
Confidence 45788899999999999999999999999999999999999999975 88999999999999999999999999877
Q ss_pred CCCchhHHHHhhcCcEEEEEEeecCCCCCCCcccccEEEEecCCceeeecccceeeCCEEEEEEEeeHHHHHHHHHHHHH
Q 019198 99 GVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFE 178 (344)
Q Consensus 99 ~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~~~vDivIvREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe 178 (344)
+++|+|++|||+||||+|+|||+++||+++|++++|++||||||||+|+|.|++..+++++++++|||+++|||+|+||+
T Consensus 95 ~~~s~~l~lR~~ldlyan~RP~~~~pg~~s~~~~vD~vivREnteg~Y~g~e~~~~~~~a~~~~~~T~~~~eRiar~AFe 174 (354)
T 3blx_B 95 GHRSLNLTLRKTFGLFANVRPAKSIEGFKTTYENVDLVLIRENTEGEYSGIEHIVCPGVVQSIKLITRDASERVIRYAFE 174 (354)
T ss_dssp -CCCHHHHHHHHHTEEEEEEEEECCTTCCCSSCSCEEEEEEECSSEEEEEEEEECSTTEEEEEEEEEHHHHHHHHHHHHH
T ss_pred cccCchHHHHHHcCCEEEEEEecccCCCCCCCCCccEEEEecCcCCcccCCcccccCCEEEEEEEEcHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999998777889999999999999999999999
Q ss_pred HHHhcCCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeeeHhHHHHHHHhCCCCcc--EEecCCcchhhhhhhh
Q 019198 179 YAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFD--VMVTPNLYGNLVSNTA 256 (344)
Q Consensus 179 ~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~vD~~~~~Lv~~P~~fd--VIvt~NlfGDIlSDla 256 (344)
+|++|+|||||+|||+||||+|||||+++|+|++++||+|+++|+|||+++||||++|++|| ||||+|||||||||++
T Consensus 175 ~A~~r~rkkVt~v~KaNvlk~sdglf~~~~~eva~eypdI~~~~~~vD~~~m~lv~~P~~FD~~Vivt~NlfGDIlSD~a 254 (354)
T 3blx_B 175 YARAIGRPRVIVVHKSTIQRLADGLFVNVAKELSKEYPDLTLETELIDNSVLKVVTNPSAYTDAVSVCPNLYGDILSDLN 254 (354)
T ss_dssp HHHHTTCSEEEEEESCTTTCHHHHHHHHHHHHHGGGCTTSEEEEEEHHHHHHHHHHCGGGGTTEEEEECHHHHHHHHHHH
T ss_pred HHHhcCCCeEEEEECCcchHhHHHHHHHHHHHHHHHCCCceEEEEEHHHHHHHHhhChhhCCceEEEecCcccchhHHHH
Confidence 99999889999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred hhh-cCCCccccCcccCC------------CcCccCcCCCChhHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHcC-ccc
Q 019198 257 AGI-AGGTGVMPGAGNVG------------NEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEE-KYR 322 (344)
Q Consensus 257 a~l-~GglGl~pSa~nig------------APdiaGk~iANP~a~Ils~ammL~~lg~~~~a~~i~~Av~~~l~~g-~~~ 322 (344)
|++ +||+||+||+ |+| ||||||||+|||+|+|||++|||+|||+.++|++|++||.+++++| +++
T Consensus 255 a~l~~GslGl~pSa-nig~~~a~fEp~HGSAPdiAGk~iANP~A~IlS~ammL~~lg~~~~A~~Ie~Av~~~l~~g~~~~ 333 (354)
T 3blx_B 255 SGLSAGSLGLTPSA-NIGHKISIFEAVHGSAPDIAGQDKANPTALLLSSVMMLNHMGLTNHADQIQNAVLSTIASGPENR 333 (354)
T ss_dssp HHHHTSSGGGCEEE-EEESSCEEEEECSCCCGGGTTTTCCCTHHHHHHHHHHHHHHTCHHHHHHHHHTHHHHHTSSTTSS
T ss_pred HhhccCCcccccee-EECCCceEEecCCCChhhhcCCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCCCcc
Confidence 999 9999999999 998 9999999999999999999999999999999999999999999999 469
Q ss_pred CCCCCCCCcHHHHHHHHHHhc
Q 019198 323 TKDLGGGCTTQQIVDAVIANL 343 (344)
Q Consensus 323 T~DlgG~~sT~e~~~aV~~~l 343 (344)
|+||||++||+||+|+|+++|
T Consensus 334 T~DlgG~~~T~e~~dav~~~l 354 (354)
T 3blx_B 334 TGDLAGTATTSSFTEAVIKRL 354 (354)
T ss_dssp CGGGTCCCCHHHHHHHHHHTC
T ss_pred CCCcCCCCCHHHHHHHHHhhC
Confidence 999999999999999999976
No 4
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A
Probab=100.00 E-value=1.6e-109 Score=814.04 Aligned_cols=314 Identities=39% Similarity=0.576 Sum_probs=299.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHc----CCCeeEEEEEeeCC-----CCCCcHHHHHHHHh-cCeEEEccccCCCC
Q 019198 28 SPRAVTLIPGDGIGPLVTNAVEQVMEAM----HAPIYFEKYEVHGD-----MKRVPQQVLDSIRK-NKVCLKGGLKTPVG 97 (344)
Q Consensus 28 ~~~~I~vi~GDGIGpEV~~~~~~vl~~~----~~~i~~~~~~~g~~-----g~~lp~~~~~~~~~-~da~l~G~~~~p~~ 97 (344)
++|+|+||||||||||||+++++||+++ +++++|+++++|++ |+++|++++++||+ +|++||||+++|..
T Consensus 9 ~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~~da~L~Gavg~P~~ 88 (366)
T 3ty4_A 9 RRIVLGLIPADGIGKEVVPAARRLMENLPAKHKLKFDFIDLDAGWGTFERTGKALPERTVERLKTECNAALFGAVQSPTH 88 (366)
T ss_dssp CEEEEEEEEESTTHHHHHHHHHHHHHTCCGGGCCEEEEEECCCSHHHHHHHSCSSCHHHHHHHHHHCSEEEEEECCCCSS
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHHHHHhcCCceEEEEecchHHHHHhhCCCCCHHHHHHHHHhCCEEEECCccCCCC
Confidence 5799999999999999999999999996 68899999999975 99999999999999 69999999999975
Q ss_pred C--CCCchhHHHHhhcCcEEEEEEeecCCCCCCCcccccEEEEecCCceeeeccccee----eCCEEEEEEEeeHHHHHH
Q 019198 98 G--GVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIRENTEGEYSGLEHEV----VPGVVESLKVITKFCSER 171 (344)
Q Consensus 98 ~--~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~~~vDivIvREnteG~Y~g~e~~~----~~~va~~~~~~Tr~~~eR 171 (344)
+ +++|+++.|||+||||+|+||||++||+. .+++||+||||||||+|+|.+++. .+++++++++|||+++||
T Consensus 89 ~~~~~~s~~l~LRk~ldlyaNvRP~~~~~g~~--~~~vD~vivREnTeG~Y~g~e~~~~~~~~~~~a~~~~~~Tr~~~eR 166 (366)
T 3ty4_A 89 KVAGYSSPIVALRKKMGLYANVRPVKSLDGAK--GKPVDLVIVRENTECLYVKEERMVQNTPGKRVAEAIRRISEEASTK 166 (366)
T ss_dssp CCTTCCCHHHHHHHHTTCCEEEEEEECCTTCS--SSCCEEEEEEECSCBGGGCCEEEEECCTTCCEEEEEEEEEHHHHHH
T ss_pred CCcccccchHHHHHHhCCeEEEEEEeccCCCC--CCCCcEEEEeeCCCCEeecCcceeccCCCCceEEEEEEecHHHHHH
Confidence 4 67899999999999999999999999984 246999999999999999999875 357999999999999999
Q ss_pred HHHHHHHHHHhc------------CCCceEEEeccchhhhchHHHHHHHHHH---HhhCCCceeeeeeHhHHHHHHHhCC
Q 019198 172 IAKYAFEYAYLN------------YRKKVTAVHKANIMKLADGLFLESCREV---ATKYPSIKYNEIIVDNCCMQLVSKP 236 (344)
Q Consensus 172 iar~AFe~A~~r------------~~~~Vt~v~KaNvlk~tdglf~~~~~ev---a~eyp~I~~~~~~vD~~~~~Lv~~P 236 (344)
|+|+||++|++| +|+|||+|||+|||+.|+|||+++|+|| +++||+|+++|+|||+++||||++|
T Consensus 167 Iar~AFe~A~~r~~~~~~~~~~~~~rkkVt~v~KaNVl~~s~glf~~~~~ev~~~a~eypdV~~~~~~VD~~am~lv~~P 246 (366)
T 3ty4_A 167 IGKMAFEIAKSRQKIRESGTYSIHKKPLVTIIHKSNVMSVTDGLFRESCRHAQSLDPSYASINVDEQIVDSMVYRLFREP 246 (366)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCSCSSCEEEEEECTTTCTTHHHHHHHHHHHHGGGCGGGTTSEEEEEEHHHHHHHHHHCG
T ss_pred HHHHHHHHHHhcCccccccccccCCCCeEEEEECCcchHhHHHHHHHHHHHHHHhHhhCCCceEEeeeHHHHHHHHHhCc
Confidence 999999999998 6899999999999999999999999999 8999999999999999999999999
Q ss_pred CCccEEecCCcchhhhhhhhhhhcCCCccccCcccCC------------CcCccCcCCCChhHHHHHHHHHhhhcCchHH
Q 019198 237 EQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGNVG------------NEKVVEQKKANPVALLLSSAMMLRHLQFPSF 304 (344)
Q Consensus 237 ~~fdVIvt~NlfGDIlSDlaa~l~GglGl~pSa~nig------------APdiaGk~iANP~a~Ils~ammL~~lg~~~~ 304 (344)
++||||||+|||||||||++|+++||+||+||+ |+| ||||||||+|||+|+|||++|||+|||+.++
T Consensus 247 ~~FDViVt~NlfGDILSD~aa~l~GslGl~pSa-nig~~~a~fEpvHGSAPdIaGk~iANP~A~IlS~amML~~lg~~~~ 325 (366)
T 3ty4_A 247 ECFDVVVAPNLYGDILSDGAASLIGSLGLVPSA-NVGDNFVMSEPVHGSAPDIAGRGIANPVATFRSVALMLEFMGHQDA 325 (366)
T ss_dssp GGCSEEEECHHHHHHHHHHHHGGGSCGGGCCCE-EECSSCEEECCSSCCCTTTTTSSCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccCcEEEECccchHHHHHHHHHhcCchhhhcce-eeCCCceEEecCCCChhhcCCCCccCcHHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999999999999999999 998 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCcccCCCCCCCCcHHHHHHHHHHhcC
Q 019198 305 ADRLETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANLD 344 (344)
Q Consensus 305 a~~i~~Av~~~l~~g~~~T~DlgG~~sT~e~~~aV~~~l~ 344 (344)
|++|++||.++|++|+++|+||||++||+||+|+|+++|+
T Consensus 326 A~~Ie~Av~~~l~~G~~~T~Dlgg~~~T~e~~daV~~~l~ 365 (366)
T 3ty4_A 326 AADIYTAVDKVLTEGKVLTPDLGGKSGTNEITDAVLANIH 365 (366)
T ss_dssp HHHHHHHHHHHHHHCSSCCGGGTSCCCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHcCCccCcccCCCcCHHHHHHHHHHHhh
Confidence 9999999999999996699999999999999999999884
No 5
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X*
Probab=100.00 E-value=1.3e-109 Score=815.13 Aligned_cols=314 Identities=32% Similarity=0.513 Sum_probs=299.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHc----CCCeeEEEEEeeC-C-----CCCCcHHHHHHHHhcCeEEEccccCCC-
Q 019198 28 SPRAVTLIPGDGIGPLVTNAVEQVMEAM----HAPIYFEKYEVHG-D-----MKRVPQQVLDSIRKNKVCLKGGLKTPV- 96 (344)
Q Consensus 28 ~~~~I~vi~GDGIGpEV~~~~~~vl~~~----~~~i~~~~~~~g~-~-----g~~lp~~~~~~~~~~da~l~G~~~~p~- 96 (344)
.+|+|+||||||||||||+++++||+++ +++++|+++++|. + |+++|++++++||++|++||||+++|.
T Consensus 4 ~~~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~~g~~lp~~tl~~~~~~da~L~Gavg~P~~ 83 (364)
T 3flk_A 4 HSFRIAAIPGDGIGLEVLPEGIRVLEAAALKHGLALEFDTFEWASCDYYLQHGKMMPDDWAEQLKQYDAIYFGAVGWPDK 83 (364)
T ss_dssp -CEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCEEEEECCCSSHHHHHHHSSSSCTTHHHHHTTSSEEEEEECCBTTT
T ss_pred CceEEEEECCCcccHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCcHHHHhccCCcCCHHHHHHHHHCCEEEECCccCccc
Confidence 3689999999999999999999999986 7999999999999 4 999999999999999999999999995
Q ss_pred -CCCC--CchhHHHHhhcCcEEEEEEeecCCCCCCCc-----ccccEEEEecCCceeeecccceee----CCEEEEEEEe
Q 019198 97 -GGGV--SSLNVQLRKELDLYAALVNCFNLPGLPTRH-----QNVDIVVIRENTEGEYSGLEHEVV----PGVVESLKVI 164 (344)
Q Consensus 97 -~~~~--~s~~~~LR~~ldlyanvRP~~~~pg~~~~~-----~~vDivIvREnteG~Y~g~e~~~~----~~va~~~~~~ 164 (344)
++++ +|+|+.|||+||||+|+||||++||+++|+ +++||+||||||||+|+|.+++.. +++++++++|
T Consensus 84 ~~~~~~~~s~~l~LR~~ldlyanvRP~~~~pg~~splk~~~~~~vD~vivREnteG~Y~g~~~~~~~~~~~~~a~~~~~~ 163 (364)
T 3flk_A 84 VPDHISLWGSLLKFRREFDQYVNIRPVRLFPGVPCALANRKVGDIDFVVVRENTEGEYSSLGGIMFENTENEIVIQESIF 163 (364)
T ss_dssp BCHHHHHHTTHHHHHHHTTCCEEEEEEECCTTCCCSBTTCCTTSSEEEEEEECSSBTCCCCEEEESTTSTTCEEEEEEEE
T ss_pred CCCCcCcccchHHHHHHhCCeEEEEEEeccCCcccccccccCCCCCEEEEeeCCCceecCcCceeccCCCCCEEEEEEEE
Confidence 2222 578999999999999999999999999998 579999999999999999988753 6799999999
Q ss_pred eHHHHHHHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeeeHhHHHHHHHhCCCCccEEec
Q 019198 165 TKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVT 244 (344)
Q Consensus 165 Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~vD~~~~~Lv~~P~~fdVIvt 244 (344)
||+++|||+|+||++|++|++||||+|||+||||.|+|||+++|+||+++||+|+++|+|||+++||||++|++||||||
T Consensus 164 T~~~~eRIar~AFe~A~~r~~kkVt~v~KaNvlk~s~glf~~~~~eva~eypdv~~~~~~vD~~am~lv~~P~~FDVivt 243 (364)
T 3flk_A 164 TRRGVDRILKYAFDLAEKRERKHVTSATKSNGMAISMPYWDKRTEAMAAHYPHVSWDKQHIDILCARFVLQPERFDVVVA 243 (364)
T ss_dssp EHHHHHHHHHHHHHHHHHSSSCEEEEEECTTTSTTHHHHHHHHHHHHHTTCTTCEEEEEEHHHHHHHHHHCGGGCSEEEE
T ss_pred CHHHHHHHHHHHHHHHHhcCCCeEEEEECcchhhhHHHHHHHHHHHHHHHCCCceEEeeEHHHHHHHHHhCcccCcEEEe
Confidence 99999999999999999998889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhhhhhhhhhhcCCCccccCcccCC---------------CcCccCcCCCChhHHHHHHHHHhhhcC-----chHH
Q 019198 245 PNLYGNLVSNTAAGIAGGTGVMPGAGNVG---------------NEKVVEQKKANPVALLLSSAMMLRHLQ-----FPSF 304 (344)
Q Consensus 245 ~NlfGDIlSDlaa~l~GglGl~pSa~nig---------------APdiaGk~iANP~a~Ils~ammL~~lg-----~~~~ 304 (344)
+|||||||||++|+++||+||+||+ |+| ||||||||+|||+|+|||++|||+||| +.++
T Consensus 244 ~NlfGDILSD~aa~l~GslGl~pSa-nig~~~~~~a~fEp~HGSAPdiAGk~iANP~A~IlS~ammL~~lg~~~~~~~~~ 322 (364)
T 3flk_A 244 SNLFGDILSDLGPACAGTIGIAPSA-NLNPERNFPSLFEPVHGSAPDIFGKNIANPIAMIWSGALMLEFLGQGDERYQRA 322 (364)
T ss_dssp CHHHHHHHHHHHHHHTTCSTTCEEE-EECTTCSSCEEEEESSCCCTTTTTSSCCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccchHHHHHHHHHhcCCccccccc-ccCCCCCcceEEecCCCCchhhcCCCccCcHHHHHHHHHHHHHhCcccchhHHH
Confidence 9999999999999999999999999 998 999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHcCcccCCCCCCCCcHHHHHHHHHHhc
Q 019198 305 ADRLETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANL 343 (344)
Q Consensus 305 a~~i~~Av~~~l~~g~~~T~DlgG~~sT~e~~~aV~~~l 343 (344)
|++|++||.+++++|+ +|+||||.+||+||+|+|+++|
T Consensus 323 A~~Ie~Av~~~l~~G~-~T~Dlgg~~~T~e~~~aV~~~l 360 (364)
T 3flk_A 323 HDDMLNAIERVIADGS-VTPDMGGTLSTQQVGAAISDTL 360 (364)
T ss_dssp HHHHHHHHHHHHHHTC-CCGGGTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CCcccCCCcCHHHHHHHHHHHH
Confidence 9999999999999995 9999999999999999999987
No 6
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A
Probab=100.00 E-value=6.5e-108 Score=806.34 Aligned_cols=312 Identities=35% Similarity=0.537 Sum_probs=289.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHc----CCCeeEEEEEeeCC-----CCCCcHHHHHHHHhcCeEEEccccCCCCC
Q 019198 28 SPRAVTLIPGDGIGPLVTNAVEQVMEAM----HAPIYFEKYEVHGD-----MKRVPQQVLDSIRKNKVCLKGGLKTPVGG 98 (344)
Q Consensus 28 ~~~~I~vi~GDGIGpEV~~~~~~vl~~~----~~~i~~~~~~~g~~-----g~~lp~~~~~~~~~~da~l~G~~~~p~~~ 98 (344)
.+|+|+||||||||||||+++++||+++ +++++|+++++|++ |+++|++++++|+++|++||||+++|..+
T Consensus 22 M~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~g~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~daiL~Gavg~P~~~ 101 (390)
T 3u1h_A 22 MKKKIAVLPGDGIGPEVMEAAIEVLKAVAERFGHEFEFEYGLIGGAAIDEAGTPLPEETLDVCRGSDAILLGAVGGPKWD 101 (390)
T ss_dssp --CEEEEEEESTTHHHHHHHHHHHHHHHHHHHSCCCEEEECCCTHHHHHSSSSSSCHHHHHHHHTSSEEEEEECCCSTTT
T ss_pred ccceEEEECCCccCHHHHHHHHHHHHHHHHhcCCCeEEEEEEcCHHHHHhhCCcCCHHHHHHHHHCCEEEECCcCCCCcC
Confidence 3589999999999999999999999998 89999999999986 89999999999999999999999999632
Q ss_pred ----CC--CchhHHHHhhcCcEEEEEEeecCCCCC--CCc-----ccccEEEEecCCceeeecccceee---CCEEEEEE
Q 019198 99 ----GV--SSLNVQLRKELDLYAALVNCFNLPGLP--TRH-----QNVDIVVIRENTEGEYSGLEHEVV---PGVVESLK 162 (344)
Q Consensus 99 ----~~--~s~~~~LR~~ldlyanvRP~~~~pg~~--~~~-----~~vDivIvREnteG~Y~g~e~~~~---~~va~~~~ 162 (344)
+. .+.++.|||+||||||+||||++||++ +|+ +++||+||||||||+|+|.+++.. .+++++++
T Consensus 102 ~~~~~~~~~~~ll~LRk~ldLyANvRP~k~~pg~~~~splk~~~~~~vD~vIVREnTeG~Y~g~~~~~~~~g~~~a~~~~ 181 (390)
T 3u1h_A 102 QNPSELRPEKGLLGIRKGLDLFANLRPVKVYDSLADASPLKKEVIEGVDLVIVRELTGGLYFGEPSERYEEGEEAAVDTL 181 (390)
T ss_dssp SSCCSSSSSCCHHHHHHHTTEEEEEEEEECCGGGTTSSSBCHHHHSSCEEEEEEECSSBSCC-------CTTCSEEEEEE
T ss_pred CCCcccCccchHHHHHHHhCCeEEEEEeeccCCccccCCcccccccCCcEEEEeeCCCCeecCccccccCCCCceEEEEE
Confidence 22 367999999999999999999999997 777 589999999999999999988753 35799999
Q ss_pred EeeHHHHHHHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeeeHhHHHHHHHhCCCCccEE
Q 019198 163 VITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVM 242 (344)
Q Consensus 163 ~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~vD~~~~~Lv~~P~~fdVI 242 (344)
+|||+++|||+|+||++|++| |||||+|||+||| .|||||+++|+||+++||+|+++|+|||++|||||++|++||||
T Consensus 182 ~~Tr~~~eRIar~AFe~A~~r-rkkVT~v~KaNVl-~t~glfr~~~~eva~eYPdV~~~~~~VD~~amqLV~~P~~FDVi 259 (390)
T 3u1h_A 182 LYTREEIERIIRKAFELALTR-KKKVTSVDKANVL-ESSRLWREVAEEVAKEYPDVELEHMLVDNAAMQLIRNPRQFDVI 259 (390)
T ss_dssp EEEHHHHHHHHHHHHHHHHTT-TSEEEEEECTTTC-HHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCSEE
T ss_pred EecHHHHhHHHHHHHHHHHHc-CCceEEEECCccc-ccchHHHHHHHHHHhHCCCCeEEeeeHHHHHHHHHhCcccCcEE
Confidence 999999999999999999998 8999999999999 69999999999999999999999999999999999999999999
Q ss_pred ecCCcchhhhhhhhhhhcCCCccccCcccCC-------------CcCccCcCCCChhHHHHHHHHHhhh-cCchHHHHHH
Q 019198 243 VTPNLYGNLVSNTAAGIAGGTGVMPGAGNVG-------------NEKVVEQKKANPVALLLSSAMMLRH-LQFPSFADRL 308 (344)
Q Consensus 243 vt~NlfGDIlSDlaa~l~GglGl~pSa~nig-------------APdiaGk~iANP~a~Ils~ammL~~-lg~~~~a~~i 308 (344)
||+|||||||||++|+++||+||+||+ |+| ||||||||+|||+|+|||++|||+| ||+.++|++|
T Consensus 260 Vt~NlfGDILSD~aA~l~GslGl~pSa-nig~~~~a~fEpvHGSAPDIAGk~iANP~A~IlS~amML~~~lg~~~~A~~I 338 (390)
T 3u1h_A 260 VTENMFGDILSDEASMITGSLGMLPSA-SLSTDGLGLYEPVHGSAPDIAGKGIANPLATILSAAMMLRYSFGLEEEAKAI 338 (390)
T ss_dssp EECHHHHHHHHHHHHHHHSCTTTCEEE-EEETTSCEEEEESSCCCTTTTTSSCSCTHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred EecccchHHHHHHHHHhcCchhhccee-eecCCCCeeEecCCCChhhhcCCCcCCcHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 999999999999999999999999999 997 9999999999999999999999999 9999999999
Q ss_pred HHHHHHHHHcCcccCCCC--CC--CCcHHHHHHHHHHhc
Q 019198 309 ETAVKRVISEEKYRTKDL--GG--GCTTQQIVDAVIANL 343 (344)
Q Consensus 309 ~~Av~~~l~~g~~~T~Dl--gG--~~sT~e~~~aV~~~l 343 (344)
++||.++|++| ++|+|| || .+||+||+|+|+++|
T Consensus 339 e~AV~~vl~~G-~~T~Dl~~gG~~~~~T~e~~daV~~~l 376 (390)
T 3u1h_A 339 EKAVEKVLAEG-YRTADIAKPGGKYVSTTEMTDEVKAAV 376 (390)
T ss_dssp HHHHHHHHHHT-CCBTTTSCSSCCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CcChhhccCCCCccCHHHHHHHHHHHH
Confidence 99999999999 599999 66 799999999999987
No 7
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A
Probab=100.00 E-value=5.2e-108 Score=801.99 Aligned_cols=310 Identities=30% Similarity=0.453 Sum_probs=293.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHc----CCCeeEEEEEeeCC-----CCCCcHHHHHHHHhcCeEEEccccCCCCC-
Q 019198 29 PRAVTLIPGDGIGPLVTNAVEQVMEAM----HAPIYFEKYEVHGD-----MKRVPQQVLDSIRKNKVCLKGGLKTPVGG- 98 (344)
Q Consensus 29 ~~~I~vi~GDGIGpEV~~~~~~vl~~~----~~~i~~~~~~~g~~-----g~~lp~~~~~~~~~~da~l~G~~~~p~~~- 98 (344)
+|+|+||||||||||||+++++||+++ +++++|+++++|++ |+++|++++++||++|++||||+++|..+
T Consensus 6 ~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~Gavg~P~~~~ 85 (361)
T 3udu_A 6 TYKVAVLAGDGIGPLVMKEALKILTFIAQKYNFSFELNEAKIGGASIDAYGVALSDETLKLCEQSDAILFGSVGGPKWDN 85 (361)
T ss_dssp EEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCEEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGGGTT
T ss_pred ceeEEEECCCccCHHHHHHHHHHHHHHHHhcCCCEEEEEEeccHHHHHhhCCcCCHHHHHHHHHCCcEEECCcCCCCcCC
Confidence 589999999999999999999999986 79999999999986 99999999999999999999999999522
Q ss_pred ---CCC--c-hhHHHHhhcCcEEEEEEeecCCCCC--CC------cccccEEEEecCCceeeecccceeeCCEEEEEEEe
Q 019198 99 ---GVS--S-LNVQLRKELDLYAALVNCFNLPGLP--TR------HQNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVI 164 (344)
Q Consensus 99 ---~~~--s-~~~~LR~~ldlyanvRP~~~~pg~~--~~------~~~vDivIvREnteG~Y~g~e~~~~~~va~~~~~~ 164 (344)
+.+ + +++.|||+||||||+||||++||++ +| ++++|++||||||||+|+|.++.. +++++++++|
T Consensus 86 ~~~~~~~~~~~~l~LRk~ldLyaNvRP~~~~pg~~~~splk~~~~~~~vD~vivREnTeG~Y~g~~~~~-~~~a~~~~~~ 164 (361)
T 3udu_A 86 LPIDQRPERASLLPLRKHFNLFANLRPCKIYESLTHASPLKNEIIQKGVDILCVRELTGGIYFGKQDLG-KESAYDTEIY 164 (361)
T ss_dssp SCGGGSHHHHHHHHHHHHHTCCEEEEEEECCGGGGGGSSBCHHHHTTCCEEEEEEECSSGGGTSCEEEC-SSEEEEEEEE
T ss_pred CCCCcCccccchHHHHHHcCCEEEEEEeeccCCccccCCCccccccCCCcEEEEcccCCCeecCccCCc-CceEEEEEec
Confidence 222 2 3899999999999999999999995 66 357999999999999999998764 6789999999
Q ss_pred eHHHHHHHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeeeHhHHHHHHHhCCCCccEEec
Q 019198 165 TKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVT 244 (344)
Q Consensus 165 Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~vD~~~~~Lv~~P~~fdVIvt 244 (344)
||+++|||+|+||++|++| |||||+|||+|||+ |++||+++|+||+++||+|+++|+|||++|||||++|++||||||
T Consensus 165 Tr~~~eRIar~AFe~A~~r-rkkVT~v~KaNvl~-t~glf~~~~~eva~eypdV~~~~~~VD~~am~lv~~P~~FDViVt 242 (361)
T 3udu_A 165 TKKEIERIARIAFESARIR-KKKVHLIDKANVLA-SSILWREVVANVAKDYQDINLEYMYVDNAAMQIVKNPSIFDVMLC 242 (361)
T ss_dssp EHHHHHHHHHHHHHHHHHT-TSEEEEEECTTTCH-HHHHHHHHHHHHGGGCTTSEEEEEEHHHHHHHHHHCGGGCSEEEE
T ss_pred cHHHHHHHHHHHHHHHHHc-CCcEEEEECchhhc-cchHHHHHHHHHHHHCCCCeEEeeeHHHHHHHHHhCcccCcEEEe
Confidence 9999999999999999999 89999999999996 899999999999999999999999999999999999999999999
Q ss_pred CCcchhhhhhhhhhhcCCCccccCcccCC-------------CcCccCcCCCChhHHHHHHHHHhhh-cCchHHHHHHHH
Q 019198 245 PNLYGNLVSNTAAGIAGGTGVMPGAGNVG-------------NEKVVEQKKANPVALLLSSAMMLRH-LQFPSFADRLET 310 (344)
Q Consensus 245 ~NlfGDIlSDlaa~l~GglGl~pSa~nig-------------APdiaGk~iANP~a~Ils~ammL~~-lg~~~~a~~i~~ 310 (344)
+|||||||||++|+++||+||+||+ |+| ||||||||+|||+|+|||++|||+| ||++++|++|++
T Consensus 243 ~NlfGDILSD~aa~l~GslGl~pSa-nig~~~~a~fEpvHGSAPdIAGk~iANP~A~IlS~amML~~~lg~~~~A~~Ie~ 321 (361)
T 3udu_A 243 SNLFGDILSDELAAINGSLGLLSSA-SLNDKGFGLYEPAGGSAPDIAHLNIANPIAQILSAALMLKYSFKEEQAAQDIEN 321 (361)
T ss_dssp CHHHHHHHHHHHHHHHCCGGGCEEE-EECTTSCEEEEESSCCCGGGTTSSCCCCHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhcCchhhccee-eeCCCCCeeeecCCCChhhhcCCCccCCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999999999999999999 998 9999999999999999999999999 999999999999
Q ss_pred HHHHHHHcCcccCCCCCC--CCcHHHHHHHHHHhc
Q 019198 311 AVKRVISEEKYRTKDLGG--GCTTQQIVDAVIANL 343 (344)
Q Consensus 311 Av~~~l~~g~~~T~DlgG--~~sT~e~~~aV~~~l 343 (344)
||.++|++| ++|+|||| .+||+||+|+|+++|
T Consensus 322 Av~~~l~~g-~~T~DlgG~~~~~T~e~~~aV~~~l 355 (361)
T 3udu_A 322 AISLALAQG-KMTKDLNAKSYLNTDEMGDCILEIL 355 (361)
T ss_dssp HHHHHHHTT-CCCTTTCSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHcC-CcCcCCCCCCccCHHHHHHHHHHHH
Confidence 999999999 59999999 899999999999987
No 8
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus}
Probab=100.00 E-value=1.5e-107 Score=821.64 Aligned_cols=314 Identities=44% Similarity=0.679 Sum_probs=306.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEeeCC-----C-CCCcHHHHHHHHhcCeEEEccccCCCCCCCCc
Q 019198 29 PRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD-----M-KRVPQQVLDSIRKNKVCLKGGLKTPVGGGVSS 102 (344)
Q Consensus 29 ~~~I~vi~GDGIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~-----g-~~lp~~~~~~~~~~da~l~G~~~~p~~~~~~s 102 (344)
+++|++||||||||||++++++||++++++++|+++++|.+ | +++|++++++|+++|++||||+++|.+++++|
T Consensus 19 ~~~IavipGDGIGpEV~~~a~~VL~a~~~~ie~~~~~~G~~~~~~~G~~~lp~etle~ik~~daiLkGavgtP~~~~~~s 98 (496)
T 2d1c_A 19 RKLITVIPGDGIGPECVEATLKVLEAAKAPLAYEVREAGASVFRRGIASGVPQETIESIRKTRVVLKGPLETPVGYGEKS 98 (496)
T ss_dssp CEEEEEECCSTTHHHHHHHHHHHHHHTTCCEEEEECCCSHHHHTTTCTTSCCHHHHHHHHHHCEEEECCCCCCSSSSSCC
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEecCHHHHhccCCCcCcHHHHHHHHHCCEEEECCccCCCcccccC
Confidence 69999999999999999999999999999999999999976 8 99999999999999999999999998777889
Q ss_pred hhHHHHhhcCcEEEEEEeecCCCCCCCc--ccccEEEEecCCceeeecccceeeCCEEEEEEEeeHHHHHHHHHHHHHHH
Q 019198 103 LNVQLRKELDLYAALVNCFNLPGLPTRH--QNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYA 180 (344)
Q Consensus 103 ~~~~LR~~ldlyanvRP~~~~pg~~~~~--~~vDivIvREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A 180 (344)
+|++||++||||+|+||||++||+++|+ +++|++||||||||+|+|.+++..+++++++++|||+++|||+|+||+||
T Consensus 99 ~~l~LRk~LdLyaNlRP~k~~pgl~splk~~~vD~vIVREnTEG~Y~G~e~~~~~~va~~~~v~Tr~~ieRIar~AFe~A 178 (496)
T 2d1c_A 99 ANVTLRKLFETYANVRPVREFPNVPTPYAGRGIDLVVVRENVEDLYAGIEHMQTPSVAQTLKLISWKGSEKIVRFAFELA 178 (496)
T ss_dssp HHHHHHHHTTCCEEEEEEECBTTBCCTTTTSCCEEEEEEECSSBGGGCCEEEEETTEEEEEEEEEHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhCCEEEEEEEeecCCCCccccCCCccEEEEeeCcCceEeceeEecCCCeEEEEEEecHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 78999999999999999999888889999999999999999999999999
Q ss_pred HhcCCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeeeHhHHHHHHHhCCCCccEEecCCcchhhhhhhhhhhc
Q 019198 181 YLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIA 260 (344)
Q Consensus 181 ~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~vD~~~~~Lv~~P~~fdVIvt~NlfGDIlSDlaa~l~ 260 (344)
++|+|+|||+|||+||||.|||||+++|+||+++||+|+++|+|||+|+||||++|++||||||+|||||||||++|+++
T Consensus 179 ~~r~rkkVT~V~KaNVlk~sdGlfr~v~~eVa~eYPdI~~e~~~VD~~amqLV~~P~~FDVIVt~NLfGDILSDlaA~l~ 258 (496)
T 2d1c_A 179 RAEGRKKVHCATKSNIMKLAEGTLKRAFEQVAQEYPDIEAVHIIVDNAAHQLVKRPEQFEVIVTTNMNGDILSDLTSGLI 258 (496)
T ss_dssp HHTTCCEEEEEECTTTCTTHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHTTT
T ss_pred HhcCCCcEEEEECCCchhhHHHHHHHHHHHHHHHCCCceEEEEeHHHHHHHHhhCcCcceEEEECCcchHHHHHHHHHhc
Confidence 99988999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCcccCC------------CcCccCcCCCChhHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHcCcccCCCCCC
Q 019198 261 GGTGVMPGAGNVG------------NEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEEKYRTKDLGG 328 (344)
Q Consensus 261 GglGl~pSa~nig------------APdiaGk~iANP~a~Ils~ammL~~lg~~~~a~~i~~Av~~~l~~g~~~T~DlgG 328 (344)
||+||+||+ |+| ||||||||+|||+|+|||++|||+|||+.++|++|++||.+++++|+++|+||||
T Consensus 259 GslGlapSa-nig~~~a~FEpvHGSAPDIAGk~iANP~A~IlSaamML~hlG~~~~A~~Ie~AV~~vl~~G~~~T~DLgg 337 (496)
T 2d1c_A 259 GGLGFAPSA-NIGNEVAIFEAVHGSAPKYAGKNVINPTAVLLSAVMMLRYLEEFATADLIENALLYTLEEGRVLTGDVVG 337 (496)
T ss_dssp TCGGGCEEE-EECSSCEEEEESSCCCTTTTTSSCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTSSCBHHHHC
T ss_pred CCcccCcEE-EECCCCceeeCCCCchhhhcCCCccCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHcCCeeccccCC
Confidence 999999999 998 9999999999999999999999999999999999999999999999779999999
Q ss_pred ---CCcHHHHHHHHHHhc
Q 019198 329 ---GCTTQQIVDAVIANL 343 (344)
Q Consensus 329 ---~~sT~e~~~aV~~~l 343 (344)
++||+||+|+|+++|
T Consensus 338 ~~~~~sT~e~~daV~~~L 355 (496)
T 2d1c_A 338 YDRGAKTTEYTEAIIQNL 355 (496)
T ss_dssp TTTCBCHHHHHHHHHHTT
T ss_pred CCCCcCHHHHHHHHHHHH
Confidence 899999999999987
No 9
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A*
Probab=100.00 E-value=1.5e-107 Score=802.14 Aligned_cols=313 Identities=32% Similarity=0.476 Sum_probs=294.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHc----CCCeeEEEEEeeCC-----CCCCcHHHHHHHHhcCeEEEccccCCCC
Q 019198 27 GSPRAVTLIPGDGIGPLVTNAVEQVMEAM----HAPIYFEKYEVHGD-----MKRVPQQVLDSIRKNKVCLKGGLKTPVG 97 (344)
Q Consensus 27 ~~~~~I~vi~GDGIGpEV~~~~~~vl~~~----~~~i~~~~~~~g~~-----g~~lp~~~~~~~~~~da~l~G~~~~p~~ 97 (344)
+..|+|+||||||||||||+++++||+++ +++++|+++++|++ |+++|++++++||++|++||||+++|..
T Consensus 11 ~~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~g~~~~~~~~~~G~~~~~~~G~~lp~etl~~~~~~da~L~Gavg~P~~ 90 (375)
T 3vmk_A 11 GSSYQIAVLAGDGIGPEVMAEARKVLAAVEKRFDLSIEYSEYDVGGAAIDNHGCPLPEATLKGCEAADAVLFGSVGGPKW 90 (375)
T ss_dssp TSCEEEEEEEESTTHHHHHHHHHHHHHHHHHHTTCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGGG
T ss_pred CCcceEEEECCCcccHHHHHHHHHHHHHHHHhcCCCEEEEEEECCHHHHHhhCCcCCHHHHHHHHHCCeEEECCcCCCCc
Confidence 46799999999999999999999999997 79999999999986 9999999999999999999999999963
Q ss_pred C---CC----CchhHHHHhhcCcEEEEEEeecCCCCC--CCc------ccccEEEEecCCceeeecccceee----CCEE
Q 019198 98 G---GV----SSLNVQLRKELDLYAALVNCFNLPGLP--TRH------QNVDIVVIRENTEGEYSGLEHEVV----PGVV 158 (344)
Q Consensus 98 ~---~~----~s~~~~LR~~ldlyanvRP~~~~pg~~--~~~------~~vDivIvREnteG~Y~g~e~~~~----~~va 158 (344)
+ +. +++|+.|||+||||||+||||++||++ +|+ +++|||||||||||+|+|.++... ++++
T Consensus 91 ~~~~~~~~~~~~~~l~LRk~ldLyaNvRP~~~~pg~~~~splk~~~~~~~vD~vIvREnTeG~Y~g~~~~~~~~~~~~~a 170 (375)
T 3vmk_A 91 EHLPPNDQPERGALLPLRGHFELFCNMRPAKLHPGLEHMSPLRSDISEKGFDILCVRELTGGIYFGKPKGRQGEGENEEA 170 (375)
T ss_dssp TTSCSTTSHHHHHHHHHHHHTTCCEEEEEEECCTTCGGGSSBCHHHHTTCCEEEEEEECSSBTTTCSSCEEECCGGGCEE
T ss_pred cCCCccccccccchHHHHHHcCCeEEEEEEeccCCCcccCCCCcccccCCCCEEEEeeCCCCEecCCccccccCCCCceE
Confidence 2 22 234899999999999999999999995 664 689999999999999999987642 4689
Q ss_pred EEEEEeeHHHHHHHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeeeHhHHHHHHHhCCCC
Q 019198 159 ESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQ 238 (344)
Q Consensus 159 ~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~vD~~~~~Lv~~P~~ 238 (344)
+++++|||+++|||+|+||+||++| |||||+|||+|||+ +++||+++|+||+++||||+++|+|||++|||||++|++
T Consensus 171 ~~~~~~Tr~~~eRIar~AFe~A~~r-rkkVT~v~KaNvl~-~~glf~~~~~eva~eypdV~~~~~~VD~~am~lv~~P~~ 248 (375)
T 3vmk_A 171 FDTMRYSRKEIRRIAKIAFESAQGR-RKKVTSVDKANVLA-CSVLWREVVEEVAKDYPDVELEHIYIDNATMQLLRRPNE 248 (375)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHTT-TSEEEEEECTTTCH-HHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGG
T ss_pred EEEEEEcHHHHHHHHHHHHHHHHHc-CCcEEEEECchhhh-hhhHHHHHHHHHHHHCCCceEeeeeHHHHHHHHHhCccc
Confidence 9999999999999999999999999 89999999999998 569999999999999999999999999999999999999
Q ss_pred ccEEecCCcchhhhhhhhhhhcCCCccccCcccCC-------------CcCccCcCCCChhHHHHHHHHHhhh-cCchHH
Q 019198 239 FDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGNVG-------------NEKVVEQKKANPVALLLSSAMMLRH-LQFPSF 304 (344)
Q Consensus 239 fdVIvt~NlfGDIlSDlaa~l~GglGl~pSa~nig-------------APdiaGk~iANP~a~Ils~ammL~~-lg~~~~ 304 (344)
||||||+|||||||||++|+++||+||+||+ |+| ||||||||+|||+|+|||++|||+| ||+.++
T Consensus 249 FDViVt~NlfGDILSD~aa~l~GslGl~pSa-nig~~~~a~fEpvHGSAPdIAGk~iANP~A~IlS~amML~~~lg~~~~ 327 (375)
T 3vmk_A 249 FDVMLCSNLFGDIVSDEIAMLTGSMGLLASI-SMNSQGFGMYEPAGGSAPDIAGQGIANPVAQILSAALLLRHSLKLEDA 327 (375)
T ss_dssp CSEEEECHHHHHHHHHHHHHHHTCGGGCEEE-EECTTSCEEEEESSCCCTTTTTSSCSCCHHHHHHHHHHHHHTTCCHHH
T ss_pred CcEEEECchhHHHHHHHHHHhcCCcccccee-eeCCCCceEEecCCCCchhccCCCccCcHHHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999999999999999999 998 9999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHcCcccCCCC-C---C--CCcHHHHHHHHHHhc
Q 019198 305 ADRLETAVKRVISEEKYRTKDL-G---G--GCTTQQIVDAVIANL 343 (344)
Q Consensus 305 a~~i~~Av~~~l~~g~~~T~Dl-g---G--~~sT~e~~~aV~~~l 343 (344)
|++|++||.++|++|+ +|+|| | | .+||+||+|+|+++|
T Consensus 328 A~~Ie~AV~~~l~~G~-~T~Dl~g~~~G~~~~~T~e~~~aV~~~l 371 (375)
T 3vmk_A 328 ALAIEAAVSKALSDGY-LTCELLPASERSQAKSTSQMGDYIAQAI 371 (375)
T ss_dssp HHHHHHHHHHHHHTTC-CCGGGSCGGGGGGCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CCchhccCCCCCCccCHHHHHHHHHHHH
Confidence 9999999999999995 99999 5 6 899999999999987
No 10
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1
Probab=100.00 E-value=2e-107 Score=792.31 Aligned_cols=307 Identities=39% Similarity=0.655 Sum_probs=298.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHc----CCCeeEEEEEeeCC-----CCCCcHHHHHHHHhcCeEEEccccCCCCCCC
Q 019198 30 RAVTLIPGDGIGPLVTNAVEQVMEAM----HAPIYFEKYEVHGD-----MKRVPQQVLDSIRKNKVCLKGGLKTPVGGGV 100 (344)
Q Consensus 30 ~~I~vi~GDGIGpEV~~~~~~vl~~~----~~~i~~~~~~~g~~-----g~~lp~~~~~~~~~~da~l~G~~~~p~~~~~ 100 (344)
|+|+|||||||||||++++++||+++ +++++|+++++|.+ |+++|++++++|+++|++||||+++|..
T Consensus 2 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~t~~~~~~~da~l~Gav~tP~~--- 78 (336)
T 1wpw_A 2 FTVALIQGDGIGPEIVSKSKRILAKINELYSLPIEYIEVEAGDRALARYGEALPKDSLKIIDKADIILKGPVGESAA--- 78 (336)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHHHHHHHHTTCCEEEEEECCSHHHHHHSSSSSCHHHHHHHHTCSEEEECCCCTTHH---
T ss_pred cEEEEECCCCcCHHHHHHHHHHHHHHHHhhCCCeEEEEEecchHHHHhhCCcCCHHHHHHHHHCCEEEECCcCCCCc---
Confidence 79999999999999999999999998 89999999999975 9999999999999999999999999953
Q ss_pred CchhHHHHhhcCcEEEEEEeecCCCCCCCcccccEEEEecCCceeeecccceeeCCEEEEEEEeeHHHHHHHHHHHHHHH
Q 019198 101 SSLNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYA 180 (344)
Q Consensus 101 ~s~~~~LR~~ldlyanvRP~~~~pg~~~~~~~vDivIvREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A 180 (344)
.+|+.|||+||||+|+||||++||+++|++++|++||||||||+|+|.+++..+++++++++|||+++|||+|+||++|
T Consensus 79 -~~~l~lR~~ldlyan~RP~~~~pg~~~~~~~~D~vivREnteg~Y~g~~~~~~~~va~~~~~~T~~~~eRiar~AF~~A 157 (336)
T 1wpw_A 79 -DVVVKLRQIYDMYANIRPAKSIPGIDTKYGNVDILIVRENTEDLYKGFEHIVSDGVAVGMKIITRFASERIAKVGLNFA 157 (336)
T ss_dssp -HHHHHHHHTTTCCEEEEEEECCTTTCCSCSCCEEEEEEECSSBTTTCCEEEEETTEEEEEEEEEHHHHHHHHHHHHHHH
T ss_pred -chHHHHHHHhCCEEEEEEEeccCCCCCCCCCCcEEEEecCccCeEcCCccccCCCeEEEEEEecHHHHHHHHHHHHHHH
Confidence 2799999999999999999999999999999999999999999999999887789999999999999999999999999
Q ss_pred HhcCCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeeeHhHHHHHHHhCCCCccEEecCCcchhhhhhhhhhhc
Q 019198 181 YLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIA 260 (344)
Q Consensus 181 ~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~vD~~~~~Lv~~P~~fdVIvt~NlfGDIlSDlaa~l~ 260 (344)
++| |+|||+|||+||||+|||||+++|+|++++ +|+++|+|||+|+||||++|++||||||+|||||||||++|+++
T Consensus 158 ~~r-rkkvt~v~KaNvlk~t~glf~~~~~eva~~--~I~~~~~~vD~~~~~lv~~P~~FDVivt~NlfGDIlSD~aa~l~ 234 (336)
T 1wpw_A 158 LRR-RKKVTCVHKANVMRITDGLFAEACRSVLKG--KVEYSEMYVDAAAANLVRNPQMFDVIVTENVYGDILSDEASQIA 234 (336)
T ss_dssp HTT-TSEEEEEECTTTCTTHHHHHHHHHHHHHTT--TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHH
T ss_pred HHh-CCeEEEEECCcchhhhhHHHHHHHHHHHHh--CceeEEEeHHHHHHHHhhCcccceEEEEcCcchHHHHHHHHHhc
Confidence 999 899999999999999999999999999988 99999999999999999999999999999999999999999999
Q ss_pred CCCccccCcccCC------------CcCccCcCCCChhHHHHHHHHHhhhcCc-------hHHHHHHHHHHHHHHHcCcc
Q 019198 261 GGTGVMPGAGNVG------------NEKVVEQKKANPVALLLSSAMMLRHLQF-------PSFADRLETAVKRVISEEKY 321 (344)
Q Consensus 261 GglGl~pSa~nig------------APdiaGk~iANP~a~Ils~ammL~~lg~-------~~~a~~i~~Av~~~l~~g~~ 321 (344)
||+||+||+ |+| ||||||||+|||+|+|||++|||+|||+ .++|++|++||.+++++|++
T Consensus 235 GslGl~pSa-nig~~~a~fEp~HGSApdiaGk~iANP~A~IlS~ammL~~lg~~d~~~~~~~~A~~Ie~Av~~~l~~g~~ 313 (336)
T 1wpw_A 235 GSLGIAPSA-NIGDKKALFEPVHGAAFDIAGKNIGNPTAFLLSVSMMYERMYELSNDDRYIKASRALENAIYLVYKERKA 313 (336)
T ss_dssp TCGGGCEEE-EECSSCEEEEESSCCCTTTTTSSCCCTHHHHHHHHHHHHHHHHTTCCTHHHHHHHHHHHHHHHHHHHCSS
T ss_pred CCccccceE-EECCCCceEeCCCCCchhhCCCCCcCcHHHHHHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHcCCc
Confidence 999999999 998 9999999999999999999999999999 99999999999999999966
Q ss_pred cCCCCCCCCcHHHHHHHHHHhcC
Q 019198 322 RTKDLGGGCTTQQIVDAVIANLD 344 (344)
Q Consensus 322 ~T~DlgG~~sT~e~~~aV~~~l~ 344 (344)
+|+||||++||+||+|+|+++|.
T Consensus 314 ~T~DlgG~~~T~e~~dav~~~l~ 336 (336)
T 1wpw_A 314 LTPDVGGNATTDDLINEIYNKLG 336 (336)
T ss_dssp CCGGGTCCCCHHHHHHHHHHSCC
T ss_pred cCCccCCCCCHHHHHHHHHHhhC
Confidence 99999999999999999999873
No 11
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A
Probab=100.00 E-value=2.9e-107 Score=796.80 Aligned_cols=309 Identities=32% Similarity=0.533 Sum_probs=294.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHc----CCCeeEEEEEeeCC-----CCCCcHHHHHHHHhcCeEEEccccCCCCCC
Q 019198 29 PRAVTLIPGDGIGPLVTNAVEQVMEAM----HAPIYFEKYEVHGD-----MKRVPQQVLDSIRKNKVCLKGGLKTPVGGG 99 (344)
Q Consensus 29 ~~~I~vi~GDGIGpEV~~~~~~vl~~~----~~~i~~~~~~~g~~-----g~~lp~~~~~~~~~~da~l~G~~~~p~~~~ 99 (344)
+++|+||||||||||||+++++||+++ +++++|+++++|.+ |+++|++++++||++|++||||+++|...+
T Consensus 3 ~~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~l~Gavg~P~~~~ 82 (359)
T 2y3z_A 3 SMKVAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVEEAEAVLLGSVGGPKWDG 82 (359)
T ss_dssp CEEEEEECCSTTHHHHHHHHHHHHHHHHHHHTCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHHSSEEEECCCCCGGGTT
T ss_pred ccEEEEECCCCcCHHHHHHHHHHHHHHHHhcCCCeEEEEEeccHHHHHhhCCcCCHHHHHHHHHCCEEEEccccCCcccc
Confidence 489999999999999999999999998 79999999999976 999999999999999999999999995321
Q ss_pred -------CCchhHHHHhhcCcEEEEEEeecCCCCC--CCc-----ccccEEEEecCCceeeecccceeeCCEEEEEEEee
Q 019198 100 -------VSSLNVQLRKELDLYAALVNCFNLPGLP--TRH-----QNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVIT 165 (344)
Q Consensus 100 -------~~s~~~~LR~~ldlyanvRP~~~~pg~~--~~~-----~~vDivIvREnteG~Y~g~e~~~~~~va~~~~~~T 165 (344)
+++ |+.|||+||||+|+|||+++||+. +|+ +++|++||||||||+|+|.|+...+++++++++||
T Consensus 83 ~~~~~~~~~~-~l~LR~~ldlyanvRP~~~~pgl~~~splk~~~~~~iD~vivREnteg~Y~g~e~~~~~~~a~~~~~~T 161 (359)
T 2y3z_A 83 LPRKIRPETG-LLSLRKSQDLFANLRPAKVFPGLERLSPLKEEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYS 161 (359)
T ss_dssp SCGGGCHHHH-HHHHHHHTTEEEEEEEEECCTTCGGGSSSCHHHHTTCEEEEEEECSCSTTTCSSCEECSSCEECCCCCC
T ss_pred CCcccccchh-HHHHHHHhCCEEEEEEeeccCCCCCCCCcccccCCCceEEEEecCccceEecCCCcCCCceEEEEEEEc
Confidence 234 899999999999999999999983 665 46999999999999999998766567899999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeeeHhHHHHHHHhCCCCccEEecC
Q 019198 166 KFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTP 245 (344)
Q Consensus 166 r~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~vD~~~~~Lv~~P~~fdVIvt~ 245 (344)
|+++|||+|+||++|++| |+|||+|||+|||| +++||+++|+||+++||+|+++|+|||++|||||++|++||||||+
T Consensus 162 ~~~~eRIar~AFe~A~~r-rkkVt~v~KaNvlk-~~~lf~~~~~eva~eypdI~~~~~~VD~~~mqlv~~P~~FDVivt~ 239 (359)
T 2y3z_A 162 KPEVERVARVAFEAARKR-RKHVVSVDKANVLE-VGEFWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTG 239 (359)
T ss_dssp HHHHHHHHHHHHHHHHTT-TSEEEEEECTTTCH-HHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCSEEEEC
T ss_pred HHHHHHHHHHHHHHHHHc-CCeEEEEECCcccc-ccHHHHHHHHHHHHHCCcEEEEeeEHHHHHHHHhhCcccccEEEEc
Confidence 999999999999999999 89999999999999 8999999999999999999999999999999999999999999999
Q ss_pred CcchhhhhhhhhhhcCCCccccCcccCC------------CcCccCcCCCChhHHHHHHHHHhhh-cCchHHHHHHHHHH
Q 019198 246 NLYGNLVSNTAAGIAGGTGVMPGAGNVG------------NEKVVEQKKANPVALLLSSAMMLRH-LQFPSFADRLETAV 312 (344)
Q Consensus 246 NlfGDIlSDlaa~l~GglGl~pSa~nig------------APdiaGk~iANP~a~Ils~ammL~~-lg~~~~a~~i~~Av 312 (344)
|||||||||++|+++||+||+||+ |+| ||||||||+|||+|+|||++|||+| ||+.++|++|++||
T Consensus 240 NlfGDILSD~aa~l~GslGl~pSa-nig~~~~~fEpvHGSAPdiAGk~iANP~A~IlS~ammL~~slg~~~~A~~Ie~Av 318 (359)
T 2y3z_A 240 NIFGDILSDLASVLPGSLGLLPSA-SLGRGTPVFEPVHGSAPDIAGKGIANPTAAILSAAMMLEHAFGLVELARKVEDAV 318 (359)
T ss_dssp HHHHHHHHHHHHTTTSCGGGCEEE-EEESSCCEEEESSCCCGGGTTSSCSCTHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHhcCccccccee-EeCCCCceeecCCCChhhhCCCCCcCCHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 999999999999999999999999 998 9999999999999999999999999 99999999999999
Q ss_pred HHHHHcCcccCCCCCCCCcHHHHHHHHHHhc
Q 019198 313 KRVISEEKYRTKDLGGGCTTQQIVDAVIANL 343 (344)
Q Consensus 313 ~~~l~~g~~~T~DlgG~~sT~e~~~aV~~~l 343 (344)
.+++++| +|+||||++||+||+|+|+++|
T Consensus 319 ~~~l~~g--~T~Dlgg~~~T~e~~daV~~~l 347 (359)
T 2y3z_A 319 AKALLET--PPPDLGGSAGTEAFTATVLRHL 347 (359)
T ss_dssp HHHHHHS--CCGGGTCCCCHHHHHHHHHHHH
T ss_pred HHHHHcC--CCCccCCCCCHHHHHHHHHHHH
Confidence 9999999 7999999999999999999987
No 12
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1
Probab=100.00 E-value=1.4e-107 Score=800.15 Aligned_cols=312 Identities=33% Similarity=0.482 Sum_probs=297.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHc----CCCeeEEEEEeeCC-----CCCCcHHHHHHHHhcCeEEEccccCCCCC
Q 019198 28 SPRAVTLIPGDGIGPLVTNAVEQVMEAM----HAPIYFEKYEVHGD-----MKRVPQQVLDSIRKNKVCLKGGLKTPVGG 98 (344)
Q Consensus 28 ~~~~I~vi~GDGIGpEV~~~~~~vl~~~----~~~i~~~~~~~g~~-----g~~lp~~~~~~~~~~da~l~G~~~~p~~~ 98 (344)
..++|+||||||||||||+++++||+++ +++++|+++++|++ |+++|++++++||++|++||||+++|...
T Consensus 11 ~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~L~Gavg~P~~~ 90 (366)
T 1vlc_A 11 HHMKIAVLPGDGIGPEVVREALKVLEVVEKKTGKTFEKVFGHIGGDAIDRFGEPLPEETKKICLEADAIFLGSVGGPKWD 90 (366)
T ss_dssp SEEEEEEEEESTHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCTHHHHHHHSSSSCHHHHHHHHHSSEEEEEECCCGGGT
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCccc
Confidence 4579999999999999999999999998 89999999999976 99999999999999999999999999522
Q ss_pred C----CC--ch-hHHHHhhcCcEEEEEEeecCCCCC--CCc------ccccEEEEecCCceeeecccceeeCCEEEEEEE
Q 019198 99 G----VS--SL-NVQLRKELDLYAALVNCFNLPGLP--TRH------QNVDIVVIRENTEGEYSGLEHEVVPGVVESLKV 163 (344)
Q Consensus 99 ~----~~--s~-~~~LR~~ldlyanvRP~~~~pg~~--~~~------~~vDivIvREnteG~Y~g~e~~~~~~va~~~~~ 163 (344)
+ .+ +. |+.|||+||||+|+||||++||++ +|+ +++|++||||||||+|+|.+++..+++++++++
T Consensus 91 ~~~~~~r~~~~~~l~LRk~ldlyaN~RP~~~~pgl~~~splk~~~~~~~vDivIvREnteG~Y~g~~~~~~~~~a~~~~~ 170 (366)
T 1vlc_A 91 DLPPEKRPEIGGLLALRKMLNLYANIRPIKVYRSLVHVSPLKEKVIGSGVDLVTVRELSYGVYYGQPRGLDEEKGFDTMI 170 (366)
T ss_dssp TSCSTTSHHHHTHHHHHHHTTCCEEEEEEECCGGGGGGSSSCHHHHTTCCEEEEEEECSSGGGTEEEEEECSSCEEEECC
T ss_pred cCCcccCcccchhHHHHHHhCCEEEEEEccccCCCCCcCCCcccccCCCceEEEEEeCCCCeecCCccccCCCeEEEEEE
Confidence 1 11 44 999999999999999999999997 576 569999999999999999998877789999999
Q ss_pred eeHHHHHHHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeeeHhHHHHHHHhCCCCccEEe
Q 019198 164 ITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMV 243 (344)
Q Consensus 164 ~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~vD~~~~~Lv~~P~~fdVIv 243 (344)
|||+++|||+|+||++|++| |||||+|||+|||| |+|||+++|+||+++||+|+++|+|||+++||||++|++|||||
T Consensus 171 ~Tr~~~eRIar~AFe~A~~r-rkkVt~v~KaNvlk-t~glf~~~~~eva~eypdV~~~~~~VD~~~mqlv~~P~~FDViv 248 (366)
T 1vlc_A 171 YDRKTVERIARTAFEIAKNR-RKKVTSVDKANVLY-SSMLWRKVVNEVAREYPDVELTHIYVDNAAMQLILKPSQFDVIL 248 (366)
T ss_dssp CCHHHHHHHHHHHHHHHHTT-TSEEEEEECTTTCH-HHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCSEEE
T ss_pred EcHHHHHHHHHHHHHHHHHc-CCeEEEEECCcccc-cchHHHHHHHHHHHHCCCceEEeeeHHHHHHHHhhCcccceEEE
Confidence 99999999999999999999 89999999999999 99999999999999999999999999999999999999999999
Q ss_pred cCCcchhhhhhhhhhhcCCCccccCcccCC-----------CcCccCcCCCChhHHHHHHHHHhhh-cCchHHHHHHHHH
Q 019198 244 TPNLYGNLVSNTAAGIAGGTGVMPGAGNVG-----------NEKVVEQKKANPVALLLSSAMMLRH-LQFPSFADRLETA 311 (344)
Q Consensus 244 t~NlfGDIlSDlaa~l~GglGl~pSa~nig-----------APdiaGk~iANP~a~Ils~ammL~~-lg~~~~a~~i~~A 311 (344)
|+|||||||||++|+++||+||+||+ |+| ||||||||+|||+|+|||++|||+| ||+.++|++|++|
T Consensus 249 t~NlfGDILSD~aa~l~GslGl~pSa-nig~~alfEpvHGSAPdIAGk~iANP~A~IlS~ammL~~slg~~~~A~~Ie~A 327 (366)
T 1vlc_A 249 TTNMFGDILSDESAALPGSLGLLPSA-SFGDKNLYEPAGGSAPDIAGKNIANPIAQILSLAMMLEHSFGMVEEARKIERA 327 (366)
T ss_dssp ECHHHHHHHHHHHTTSSSCGGGCEEE-EESSSEEEEESSCCCTTTTTTTCSCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred EcchhHHHHHHHHHHhcCccccccEe-eeCCceeeecCCCchhhcCCCCccCcHHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 99999999999999999999999999 997 9999999999999999999999999 9999999999999
Q ss_pred HHHHHHcCcccCCCCC---CC-CcHHHHHHHHHHhc
Q 019198 312 VKRVISEEKYRTKDLG---GG-CTTQQIVDAVIANL 343 (344)
Q Consensus 312 v~~~l~~g~~~T~Dlg---G~-~sT~e~~~aV~~~l 343 (344)
|.+++++| ++|+||| |+ +||+||+|+|+++|
T Consensus 328 v~~~l~~g-~~T~Dlg~~gg~~~~T~e~~daV~~~l 362 (366)
T 1vlc_A 328 VELVIEEG-YRTRDIAEDPEKAVSTSQMGDLICKKL 362 (366)
T ss_dssp HHHHHHTT-CCCGGGCSSGGGCCCHHHHHHHHHHHH
T ss_pred HHHHHHcC-CcccccccCCCCCcCHHHHHHHHHHHH
Confidence 99999999 6999998 67 89999999999986
No 13
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A
Probab=100.00 E-value=9.5e-107 Score=795.11 Aligned_cols=311 Identities=32% Similarity=0.501 Sum_probs=293.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHc----CCCeeEEEEEeeCC-----CCCCcHHHHHHHHhcCeEEEccccCCCCC-
Q 019198 29 PRAVTLIPGDGIGPLVTNAVEQVMEAM----HAPIYFEKYEVHGD-----MKRVPQQVLDSIRKNKVCLKGGLKTPVGG- 98 (344)
Q Consensus 29 ~~~I~vi~GDGIGpEV~~~~~~vl~~~----~~~i~~~~~~~g~~-----g~~lp~~~~~~~~~~da~l~G~~~~p~~~- 98 (344)
+++|+||||||||||||+++++||+++ +++++|+++++|++ |+++|++++++||++|++||||+++|...
T Consensus 4 ~~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~L~Gavg~p~~~~ 83 (363)
T 1cnz_A 4 NYHIAVLPGDGIGPEVMAQALKVMDAVRSRFDMRITTSHYDVGGIAIDNHGHPLPKATVEGCEQADAILFGSVGGPKWEN 83 (363)
T ss_dssp CEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGGGTT
T ss_pred ccEEEEeCCCCcCHHHHHHHHHHHHHHHHhcCCceEEEEEeCChHHHhhcCCcCcHHHHHHHHHCCEEEEccccCCcccc
Confidence 589999999999999999999999998 79999999999976 99999999999999999999999999531
Q ss_pred ------CCCchhHHHHhhcCcEEEEEEeecCCCCC--CCc------ccccEEEEecCCceeeeccccee----eCCEEEE
Q 019198 99 ------GVSSLNVQLRKELDLYAALVNCFNLPGLP--TRH------QNVDIVVIRENTEGEYSGLEHEV----VPGVVES 160 (344)
Q Consensus 99 ------~~~s~~~~LR~~ldlyanvRP~~~~pg~~--~~~------~~vDivIvREnteG~Y~g~e~~~----~~~va~~ 160 (344)
.++++++.|||+||||+|+|||+++||+. +|+ +++||+||||||||+|+|.++.. .++++++
T Consensus 84 ~~~~~~~e~~~~l~LR~~ldlyanvRP~~~~pgl~~~splk~~~~~~~vDivivREnteg~Y~g~~~~~~~~~~~~~a~~ 163 (363)
T 1cnz_A 84 LPPESQPERGALLPLRKHFKLFSNLRPAKLYQGLEAFCPLRADIAANGFDILCVRELTGGIYFGQPKGREGSGQYEKAFD 163 (363)
T ss_dssp SCGGGSTTHHHHHHHHHHHTCCEEEEEEECCTTCGGGCSBCHHHHHHCCEEEEEEECSSGGGTCSSCEEECCGGGCEEEE
T ss_pred CCcccCcccchHHHHHHHcCCEEEEEEEEecCCccCCCCCcccccCCCCCEEEEecccCCeecCCcCccccCCCCceEEE
Confidence 23456999999999999999999999983 675 56999999999999999986543 2368999
Q ss_pred EEEeeHHHHHHHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeeeHhHHHHHHHhCCCCcc
Q 019198 161 LKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFD 240 (344)
Q Consensus 161 ~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~vD~~~~~Lv~~P~~fd 240 (344)
+++|||+++|||+|+||++|++| |+|||+|||+|||| +++||+++|+||+++||+|+++|+|||+++||||++|++||
T Consensus 164 ~~~~T~~~~eRiar~AFe~A~~r-rkkVt~v~KaNvlk-~~~lf~~~~~eva~eypdI~~~~~~vD~~~m~lv~~P~~FD 241 (363)
T 1cnz_A 164 TEVYHRFEIERIARIAFESARKR-RRKVTSIDKANVLQ-SSILWREIVNDVAKTYPDVELAHMYIDNATMQLIKDPSQFD 241 (363)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHTT-TSEEEEEECTTTCH-HHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCS
T ss_pred EEEEcHHHHHHHHHHHHHHHHhc-CCeEEEEECCcccc-cchhHHHHHHHHHHHCCCceEeeeeHHHHHHHHhhCcccce
Confidence 99999999999999999999999 89999999999999 89999999999999999999999999999999999999999
Q ss_pred EEecCCcchhhhhhhhhhhcCCCccccCcccCC-------------CcCccCcCCCChhHHHHHHHHHhhh-cCchHHHH
Q 019198 241 VMVTPNLYGNLVSNTAAGIAGGTGVMPGAGNVG-------------NEKVVEQKKANPVALLLSSAMMLRH-LQFPSFAD 306 (344)
Q Consensus 241 VIvt~NlfGDIlSDlaa~l~GglGl~pSa~nig-------------APdiaGk~iANP~a~Ils~ammL~~-lg~~~~a~ 306 (344)
||||+|||||||||++|+++||+||+||+ |+| ||||||||+|||+|+|||++|||+| ||+.++|+
T Consensus 242 Vivt~NlfGDIlSD~aa~l~GslGl~pSa-nig~~~~a~fEpvHGSAPdiAGk~iANP~A~IlS~ammL~~~lg~~~~A~ 320 (363)
T 1cnz_A 242 VLLCSNLFGDILSDECAMITGSMGMLPSA-SLNEQGFGLYEPAGGSAPDIAGKNIANPIAQILSLALLLRYSLDANDAAT 320 (363)
T ss_dssp EEEECHHHHHHHHHHHHHHHTCGGGCEEE-EECTTSCEEEEESSCCCGGGTTTTCSCCHHHHHHHHHHHHHHSSCHHHHH
T ss_pred EEEECCcchHHHHHHHHHhcCCCcccccc-eeCCCCCeEEEcCCCChhhhcCCCccCcHHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999999999999 998 9999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHcCcccCCCC-CC-C-CcHHHHHHHHHHhc
Q 019198 307 RLETAVKRVISEEKYRTKDL-GG-G-CTTQQIVDAVIANL 343 (344)
Q Consensus 307 ~i~~Av~~~l~~g~~~T~Dl-gG-~-~sT~e~~~aV~~~l 343 (344)
+|++||.+++++| .+|+|| || + +||+||+|+|+++|
T Consensus 321 ~Ie~Av~~~l~~g-~~T~Dl~gG~~~~~T~e~~daV~~~l 359 (363)
T 1cnz_A 321 AIEQAINRALEEG-VRTGDLARGAAAVSTDEMGDIIARYV 359 (363)
T ss_dssp HHHHHHHHHHHTT-CCCGGGTTTTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CcCcccCCCCCCCCHHHHHHHHHHHH
Confidence 9999999999999 599999 78 6 89999999999987
No 14
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} SCOP: c.77.1.1 PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4aj3_A* 4aja_A* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A ...
Probab=100.00 E-value=4.6e-107 Score=811.32 Aligned_cols=315 Identities=33% Similarity=0.527 Sum_probs=295.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHc-------CCCeeEEEEEeeCC-----CC--CCcHHHHHHHHhcCeEEEcccc
Q 019198 28 SPRAVTLIPGDGIGPLVTNAVEQVMEAM-------HAPIYFEKYEVHGD-----MK--RVPQQVLDSIRKNKVCLKGGLK 93 (344)
Q Consensus 28 ~~~~I~vi~GDGIGpEV~~~~~~vl~~~-------~~~i~~~~~~~g~~-----g~--~lp~~~~~~~~~~da~l~G~~~ 93 (344)
.+++|+||||||||||||+++++||+++ +++|+|+++++|.+ |+ ++|++++++||++|++||||++
T Consensus 35 ~~~~I~vipGDGIGpEV~~~a~~Vl~aa~~~~~~~~~~i~~~~~~~G~~a~~~~G~~~~lp~etl~~~k~~da~l~G~~~ 114 (427)
T 3dms_A 35 DQPIIPYIEGDGTGFDITPVMIKVVDAAVEKAYGGKKKIHWMEIYAGEKATKVYGPDVWLPEETLQVLKEYVVSIKGPLT 114 (427)
T ss_dssp SSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEECCTHHHHHHHCTTCSSCHHHHHHHHHTCEEEECCCC
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeCCHHHHHhcCCCCCCCHHHHHHHHhcCEEEECCCC
Confidence 4689999999999999999999999985 37999999999986 88 9999999999999999999999
Q ss_pred CCCCCCCCchhHHHHhhcCcEEEEEEeecCCCCCCCc---ccccEEEEecCCceeeecccceee----------------
Q 019198 94 TPVGGGVSSLNVQLRKELDLYAALVNCFNLPGLPTRH---QNVDIVVIRENTEGEYSGLEHEVV---------------- 154 (344)
Q Consensus 94 ~p~~~~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~---~~vDivIvREnteG~Y~g~e~~~~---------------- 154 (344)
+|.+.+++|+|+.|||+||||||+||||++||+++|+ +++||+||||||||+|+|.|++..
T Consensus 115 tP~~~~~~s~~l~LRk~LdLyaNlRPv~~~pg~~splk~~~~vDivIvREnTeG~Y~G~e~~~~~~~~~~~~~~~~~~~g 194 (427)
T 3dms_A 115 TPVGGGIRSLNVALRQELDLYVCLRPIQYFKGVPSPVREPEKTNMVIFRENSEDIYAGIEWAAESEQAKKVIKFLQEEMG 194 (427)
T ss_dssp CCC----CCHHHHHHHHTTCCEEEEEECCCTTCCCSSSCGGGCCEEEEEECSSGGGGCCEECTTCHHHHHHHHHHHHTSC
T ss_pred CCCCcccCChhHHHHHHhCCeEEEEEeecCCCCCCCCCCCCCceEEEEEECCCCEecCcccccCCccccccccccccccc
Confidence 9988788999999999999999999999999999987 479999999999999999986531
Q ss_pred -------CCEEEEEEEeeHHHHHHHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHh-hCCC---------
Q 019198 155 -------PGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVAT-KYPS--------- 217 (344)
Q Consensus 155 -------~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~-eyp~--------- 217 (344)
+++|+++++|||+++|||+|+||+||++|+|||||+|||+||||.|||||+++|+||++ +||+
T Consensus 195 ~~~~~~~~~~a~~~~~~Tr~~~eRIar~AFe~A~~r~rkkVT~V~KaNVlk~tdglfr~~~~eva~~eypdv~~~~~~~~ 274 (427)
T 3dms_A 195 VKKIRFPQTSGIGIKPVSKEGTERLVRKAIQYAIDNDRKSVTLVHKGNIMKFTEGAFRDAGYALAQKEFGAELIDGGPWM 274 (427)
T ss_dssp CCCCSCGGGCCEECCCCCHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTSTTTHHHHHHHHHHHHHHHHCCEESTTSSCE
T ss_pred ccccccCCcceEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEECCccchhhhHHHHHHHHHHHHHhCCcccccccccc
Confidence 34688999999999999999999999999889999999999999999999999999997 7985
Q ss_pred ----------ceeeeeeHhHHHHHHHhCCCCccEEecCCcchhhhhhhhhhhcCCCccccCcccCC------------Cc
Q 019198 218 ----------IKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGNVG------------NE 275 (344)
Q Consensus 218 ----------I~~~~~~vD~~~~~Lv~~P~~fdVIvt~NlfGDIlSDlaa~l~GglGl~pSa~nig------------AP 275 (344)
|+++|+|||+||||||++|++||||||+|||||||||++|+++||+||+||+ ||| ||
T Consensus 275 ~~~~~~~~~~V~~~~~~VD~~amqlv~~P~~FDViVt~NlfGDILSD~aA~l~GslGl~pSa-nig~~~a~fEpvHGSAP 353 (427)
T 3dms_A 275 KFKNPKTGNEIVVKDSIADAFLQQILLRPAEYDVIATLNLNGDYISDALAAQVGGIGIAPGA-NLSDSVAMFEATHGTAP 353 (427)
T ss_dssp EEECTTTCCEEEEEEEEHHHHHHHHHHCGGGCCEEEECHHHHHHHHHHHHHHTTCTTTCEEE-EECSSCEEEEECSCCCG
T ss_pred ccccccccCceEEEEeeHHHHHHHHhhCcccceEEEEcccccHHHHHHHHHhcCCcccccee-eeCCCcceEEeccCChh
Confidence 8899999999999999999999999999999999999999999999999999 998 99
Q ss_pred CccCcCCCChhHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHcCcccCCCCCC------CCcHHHHHHHHHHhcC
Q 019198 276 KVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEEKYRTKDLGG------GCTTQQIVDAVIANLD 344 (344)
Q Consensus 276 diaGk~iANP~a~Ils~ammL~~lg~~~~a~~i~~Av~~~l~~g~~~T~DlgG------~~sT~e~~~aV~~~l~ 344 (344)
||||||+|||+|+|||++|||+|||+.++|++|++||.++|++|+ +|+|||| .+||+||+|+|+++|+
T Consensus 354 dIAGk~iANP~A~IlS~amML~~lg~~~~A~~Ie~AV~~vl~~G~-~T~Dlgg~~~g~~~~~T~e~~daV~~~l~ 427 (427)
T 3dms_A 354 KYAGKDYVNPGSEILSAEMMLRHLGWTEAADVIISAMEKSIKQKR-VTYDFARLMEGATQVSCSGFGQVLIENME 427 (427)
T ss_dssp GGTTSSCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTE-ECHHHHTTSSSCEECCHHHHHHHHHHTTC
T ss_pred hhcCCCcCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCC-cchhhccccCCCCccCHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999995 8999976 5899999999999874
No 15
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana}
Probab=100.00 E-value=8.2e-107 Score=802.46 Aligned_cols=313 Identities=31% Similarity=0.501 Sum_probs=294.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHc----CCCeeEEEEEeeCC-----CCCCcHHHHHHHHhcCeEEEccccCCCCC
Q 019198 28 SPRAVTLIPGDGIGPLVTNAVEQVMEAM----HAPIYFEKYEVHGD-----MKRVPQQVLDSIRKNKVCLKGGLKTPVGG 98 (344)
Q Consensus 28 ~~~~I~vi~GDGIGpEV~~~~~~vl~~~----~~~i~~~~~~~g~~-----g~~lp~~~~~~~~~~da~l~G~~~~p~~~ 98 (344)
.+|+|+||||||||||||+++++||+++ +++++|+++++|++ |+++|++++++|+++|++||||+++|..+
T Consensus 41 ~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~k~~daiL~Gavg~P~~~ 120 (405)
T 3r8w_A 41 KRYTITLLPGDGIGPEVVSIAKNVLQQAGSLEGVEFNFREMPIGGAALDLVGVPLPEETISAAKESDAVLLGAIGGYKWD 120 (405)
T ss_dssp CEEEEEEEEESTTHHHHHHHHHHHHHHHHHHTTCEEEEEECCCHHHHHHHHSSSSCHHHHHHHHHSSEEEEEECCCGGGT
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHHHHHHhcCCceEEEEEEcCHHHHHhhCCcCCHHHHHHHHHCCEEEEccccCCCcc
Confidence 4689999999999999999999999997 78999999999986 99999999999999999999999999532
Q ss_pred ---CCC---chhHHHHhhcCcEEEEEEeecCCCC--CCCc-----ccccEEEEecCCceeeecccceee-----CCEEEE
Q 019198 99 ---GVS---SLNVQLRKELDLYAALVNCFNLPGL--PTRH-----QNVDIVVIRENTEGEYSGLEHEVV-----PGVVES 160 (344)
Q Consensus 99 ---~~~---s~~~~LR~~ldlyanvRP~~~~pg~--~~~~-----~~vDivIvREnteG~Y~g~e~~~~-----~~va~~ 160 (344)
... +.|+.|||+||||+|+||||++||+ ++|+ +++||+||||||||+|+|.++... ++++++
T Consensus 121 ~~~~~~~p~~~ll~LRk~ldLyaNlRP~k~~~gl~~~splk~~~~~~vD~vIvREnTeG~Y~G~e~~~~~~~~~~~~a~~ 200 (405)
T 3r8w_A 121 NNEKHLRPEKGLLQIRAALKVFANLRPATVLPQLVDASTLKREVAEGVDLMVVRELTGGIYFGEPRGIKTNENGEEVGFN 200 (405)
T ss_dssp TSCGGGSHHHHHHHHHHHHTCCEEEEEEECCGGGGGGSSBCHHHHTTCEEEEEEECSCSTTTCSSCEEEECSSSCEEEEE
T ss_pred CCccccCcccchHHHHHHhCCeEEEEEeeccCCccccCccccccCCCceEEEEeeCCCCeecCCccccccCCCCceEEEE
Confidence 222 3489999999999999999999998 4665 479999999999999999987642 347899
Q ss_pred EEEeeHHHHHHHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeeeHhHHHHHHHhCCCCcc
Q 019198 161 LKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFD 240 (344)
Q Consensus 161 ~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~vD~~~~~Lv~~P~~fd 240 (344)
+++|||+++|||+|+||+||++| |||||+|||+|||+.+ +||+++|+||+++||||+++|+|||+++||||++|++||
T Consensus 201 ~~~~Tr~~~eRIar~AFe~A~~r-rkkVT~v~KaNVlk~s-glf~~~~~eva~eYPdV~~~~~~VD~~amqLV~~P~~FD 278 (405)
T 3r8w_A 201 TEVYAAHEIDRIARVAFETARKR-RGKLCSVDKANVLEAS-ILWRKRVTALASEYPDVELSHMYVDNAAMQLVRDPKQFD 278 (405)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHTT-TSEEEEEECTTTCHHH-HHHHHHHHHHGGGSTTSEEEEEEHHHHHHHHHHCGGGCS
T ss_pred EEEecHHHHHHHHHHHHHHHHHc-CCeEEEEECchhhccc-cHHHHHHHHHHhHCCCCeEEeeeHHHHHHHHHhChhhCc
Confidence 99999999999999999999987 8999999999999965 999999999999999999999999999999999999999
Q ss_pred EEecCCcchhhhhhhhhhhcCCCccccCcccCC-------------CcCccCcCCCChhHHHHHHHHHhhh-cCchHHHH
Q 019198 241 VMVTPNLYGNLVSNTAAGIAGGTGVMPGAGNVG-------------NEKVVEQKKANPVALLLSSAMMLRH-LQFPSFAD 306 (344)
Q Consensus 241 VIvt~NlfGDIlSDlaa~l~GglGl~pSa~nig-------------APdiaGk~iANP~a~Ils~ammL~~-lg~~~~a~ 306 (344)
||||+|||||||||++|+++||+||+||+ |+| ||||||||+|||+|+|||++|||+| ||+.++|+
T Consensus 279 ViVt~NlfGDILSD~aA~l~GslGl~pSa-nig~~~~a~fEpvHGSAPDIAGk~iANP~A~IlS~amML~~slg~~~~A~ 357 (405)
T 3r8w_A 279 TIVTNNIFGDILSDEASMITGSIGMLPSA-SLSDSGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLKYGLGEEKAAK 357 (405)
T ss_dssp EEEECHHHHHHHHHHHHHHHSCGGGCEEE-EECSSSCCEEEESSCCCGGGTTTTCCCCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred EEeecchhhHHHHHHHHHhcCccccccee-eecCCCCeEEecCCCChhhhCCCCCCCcHHHHHHHHHHHHhhCccHHHHH
Confidence 99999999999999999999999999999 997 9999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHcCcccCCCC--CCC--CcHHHHHHHHHHhcC
Q 019198 307 RLETAVKRVISEEKYRTKDL--GGG--CTTQQIVDAVIANLD 344 (344)
Q Consensus 307 ~i~~Av~~~l~~g~~~T~Dl--gG~--~sT~e~~~aV~~~l~ 344 (344)
+|++||.++|++| ++|+|| ||. +||+||+|+|+++|+
T Consensus 358 ~Ie~AV~~~l~~G-~~T~Dl~~gG~~~~~T~e~~~aV~~~l~ 398 (405)
T 3r8w_A 358 RIEDAVLVALNNG-FRTGDIYSAGTKLVGCKEMGEEVLKSVD 398 (405)
T ss_dssp HHHHHHHHHHHTT-EECGGGCCTTSEECCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcC-CcCccccCCCCcccCHHHHHHHHHHHHH
Confidence 9999999999999 599999 998 999999999999873
No 16
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A
Probab=100.00 E-value=3.1e-106 Score=784.70 Aligned_cols=305 Identities=31% Similarity=0.524 Sum_probs=291.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEeeCC-----CCCCcHHHHHHHHhcCeEEEccccCCCC-CC--CC
Q 019198 30 RAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD-----MKRVPQQVLDSIRKNKVCLKGGLKTPVG-GG--VS 101 (344)
Q Consensus 30 ~~I~vi~GDGIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~-----g~~lp~~~~~~~~~~da~l~G~~~~p~~-~~--~~ 101 (344)
|+|+||||||||||||+++++||++++.+++|+++++|.+ |+++|++++++||++|++||||+++|.. .+ ++
T Consensus 2 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~G~~~~~~~g~~lp~~t~~~~~~~da~l~Gav~~P~~~~~~~~~ 81 (337)
T 1w0d_A 2 SKLAIIAGDGIGPEVTAEAVKVLDAVVPGVQKTSYDLGARRFHATGEVLPDSVVAELRNHDAILLGAIGDPSVPSGVLER 81 (337)
T ss_dssp CEEEEEEESTTHHHHHHHHHHHHHHHSTTCEEEECCCSHHHHHHHSCSSCHHHHHHHTTSSEEEEEECCCTTSCTTHHHH
T ss_pred cEEEEeCCCCcCHHHHHHHHHHHHHhcCCcEEEEEecchHHHhhhCCcCCHHHHHHHHHCCEEEECCccCCCCCCccccc
Confidence 6999999999999999999999999977899999999976 9999999999999999999999999942 22 36
Q ss_pred chhHHHHhhcCcEEEEEEeecCCCCCCCccc---ccEEEEecCCceeeecccceee----CCEEEEEEEeeHHHHHHHHH
Q 019198 102 SLNVQLRKELDLYAALVNCFNLPGLPTRHQN---VDIVVIRENTEGEYSGLEHEVV----PGVVESLKVITKFCSERIAK 174 (344)
Q Consensus 102 s~~~~LR~~ldlyanvRP~~~~pg~~~~~~~---vDivIvREnteG~Y~g~e~~~~----~~va~~~~~~Tr~~~eRiar 174 (344)
|+|++|||+||||+|+|||+++||+++|+++ +|++||||||||+|+|.|++.. +++++++++|||+++|||+|
T Consensus 82 s~~l~lR~~ldlyan~RP~~~~pg~~s~l~~~~~~DivivREnteg~Y~g~e~~~~~g~~~~~a~~~~~~T~~~~eRiar 161 (337)
T 1w0d_A 82 GLLLRLRFELDHHINLRPARLYPGVASPLSGNPGIDFVVVREGTEGPYTGNGGAIRVGTPNEVATEVSVNTAFGVRRVVA 161 (337)
T ss_dssp HTHHHHHHHTTCCEEEEEEECCTTCCCSBTTCCCCEEEEEEECSCSGGGCCEEEESTTSTTCEEEEEEEEEHHHHHHHHH
T ss_pred chHHHHHHHcCCEEEEEEeecCCCCCCcccCCCCCcEEEEecCCCCeecCCcceecCCCCCCeEEEEEEEcHHHHHHHHH
Confidence 7899999999999999999999999999876 9999999999999999988753 35899999999999999999
Q ss_pred HHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeeeHhHHHHHHHhCCCCccEEecCCcchhhhhh
Q 019198 175 YAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSN 254 (344)
Q Consensus 175 ~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~vD~~~~~Lv~~P~~fdVIvt~NlfGDIlSD 254 (344)
+||+||++| |||||+|||+||||+|||||+++|+|++++||+|+++|+|||+++||||++|++||||||+|||||||||
T Consensus 162 ~AFe~A~~r-rkkVt~v~KaNvlk~s~glf~~~~~eva~eyp~i~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDIlSD 240 (337)
T 1w0d_A 162 DAFERARRR-RKHLTLVHKTNVLTFAGGLWLRTVDEVGECYPDVEVAYQHVDAATIHMITDPGRFDVIVTDNLFGDIITD 240 (337)
T ss_dssp HHHHHHHHT-TSEEEEEECTTTSHHHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHH
T ss_pred HHHHHHHHc-CCeEEEEECCccchhhhHHHHHHHHHHHHHCCceEEEEEEHHHHHHHHhhCcccccEEEECcchhHHHHH
Confidence 999999999 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCccccCcccCC---------------CcCccCcCCCChhHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHcC
Q 019198 255 TAAGIAGGTGVMPGAGNVG---------------NEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEE 319 (344)
Q Consensus 255 laa~l~GglGl~pSa~nig---------------APdiaGk~iANP~a~Ils~ammL~~lg~~~~a~~i~~Av~~~l~~g 319 (344)
++|+++||+||+||+ |+| ||||||||+|||+|+|||++|||+|||+.++|++|++||.+++++|
T Consensus 241 ~aa~l~GslGl~psa-nig~~~~~~a~fEp~HGSAPdiAGk~iANP~A~IlS~ammL~~lg~~~~A~~Ie~Av~~~l~~g 319 (337)
T 1w0d_A 241 LAAAVCGGIGLAASG-NIDATRANPSMFEPVHGSAPDIAGQGIADPTAAIMSVALLLSHLGEHDAAARVDRAVEAHLATR 319 (337)
T ss_dssp HHHHHTTCGGGCEEE-EECTTCSSCEEEEESSCCCGGGTTSSCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHhhhcCCcccCcee-EeCCCCCCceEEecCCCChhhhCCCCCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHcC
Confidence 999999999999999 998 9999999999999999999999999999999999999999999998
Q ss_pred cccCCCCCC-CCcHHHHHHHHHHhc
Q 019198 320 KYRTKDLGG-GCTTQQIVDAVIANL 343 (344)
Q Consensus 320 ~~~T~DlgG-~~sT~e~~~aV~~~l 343 (344)
|| ++||+||+|+|+++|
T Consensus 320 -------gg~~~~T~e~~~av~~~l 337 (337)
T 1w0d_A 320 -------GSERLATSDVGERIAAAL 337 (337)
T ss_dssp -------TTCCCCHHHHHHHHHHTC
T ss_pred -------CCCCcCHHHHHHHHHhhC
Confidence 77 899999999999976
No 17
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A*
Probab=100.00 E-value=2.5e-106 Score=802.79 Aligned_cols=315 Identities=34% Similarity=0.570 Sum_probs=293.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHc-------CCCeeEEEEEeeCC-----CCCCcHHHHHHHHhcCeEEEccccCC
Q 019198 28 SPRAVTLIPGDGIGPLVTNAVEQVMEAM-------HAPIYFEKYEVHGD-----MKRVPQQVLDSIRKNKVCLKGGLKTP 95 (344)
Q Consensus 28 ~~~~I~vi~GDGIGpEV~~~~~~vl~~~-------~~~i~~~~~~~g~~-----g~~lp~~~~~~~~~~da~l~G~~~~p 95 (344)
.+++|+||||||||||||+++++||+++ +++++|+++++|.+ |+++|++++++||++|++||||+++|
T Consensus 23 ~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkGav~tP 102 (409)
T 2e0c_A 23 NKPVILYIEGDGIGPEITNAAIKVINKAVERAYGSSREIKWLEVYAGEKAEKLVNDRFPKETQEMLLKYRVVLKGPLETP 102 (409)
T ss_dssp SSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCCTHHHHHHHSCSSCHHHHHHHHHHCEEEECCCC--
T ss_pred CCceEeeCCCCCcCHHHHHHHHHHHHHHHHhhcCCCCceEEEEEechHHHHHhhCCcCCHHHHHHHHHCCEEEECCccCC
Confidence 4589999999999999999999999997 38999999999976 99999999999999999999999999
Q ss_pred CCCCCCchhHHHHhhcCcEEEEEEeecCCCCCCCcc---cccEEEEecCCceeeeccccee-------------------
Q 019198 96 VGGGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQ---NVDIVVIRENTEGEYSGLEHEV------------------- 153 (344)
Q Consensus 96 ~~~~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~~---~vDivIvREnteG~Y~g~e~~~------------------- 153 (344)
.+.+++|+|++|||+||||+|+|||+++||+++|++ ++||+||||||||+|+|.+++.
T Consensus 103 ~~~~~~s~~l~LR~~LdlyanvRPv~~~~g~~splk~~~~vDivIvREnteg~Y~g~e~~~~~~~~~~v~~f~~~~~~~~ 182 (409)
T 2e0c_A 103 IGKGWKSVNVAIRLMLDLYANIRPVKYIEGLESPLKHPEKVDMIIFRENTDDLYRGIEYPFNSEEAKKIRDFLRKELKVE 182 (409)
T ss_dssp ------CHHHHHHHHTTCCEEEEEEECCTTCCCSBSCCTTCEEEEEEECSSGGGGCCEECTTSHHHHHHHHHHHHHSCCC
T ss_pred CcccccChhHHHHHHcCCEEEEEEEeccCCCCCCCCCccCCcEEEEEcCCCCEeCCcccccCCCcccchhhccchhcccc
Confidence 777788999999999999999999999999999885 6999999999999999998643
Q ss_pred -eCCEEEEEEEeeHHHHHHHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHh-hCCC--------------
Q 019198 154 -VPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVAT-KYPS-------------- 217 (344)
Q Consensus 154 -~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~-eyp~-------------- 217 (344)
.+++++++++|||+++|||+|+||+||++|++||||+|||+||||+|||||+++|+||++ +||+
T Consensus 183 ~~~~~a~~~~~~t~~~~eRiar~AFe~A~~r~rkkVt~v~KaNVlk~sdglf~~~~~eva~~eypd~~~~~~~~~~~~~~ 262 (409)
T 2e0c_A 183 IEDDTGIGIKVMSKYKTQRITRLAIQYAIEHKRKKVTIMHKGNVMKYTEGAFREWAYEVALKEYRDFIVTEEEINQGKPD 262 (409)
T ss_dssp CCSSEEEEEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEEECTTTSTTTHHHHHHHHHHHHHHHSTTTEEEHHHHTTTCCC
T ss_pred CCCceEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECccchhhhhhHHHHHHHHHHHHhCCCcccccccccccccc
Confidence 246899999999999999999999999999888999999999999999999999999997 9999
Q ss_pred ---ceeeeeeHhHHHHHHHhCCCCccEEecCCcchhhhhhhhhhhcCCCccccCcccCC------------CcCccCcCC
Q 019198 218 ---IKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGNVG------------NEKVVEQKK 282 (344)
Q Consensus 218 ---I~~~~~~vD~~~~~Lv~~P~~fdVIvt~NlfGDIlSDlaa~l~GglGl~pSa~nig------------APdiaGk~i 282 (344)
|+++|+|||+++||||++|++||||||+|||||||||++|+++||+||+||+ |+| ||||||||+
T Consensus 263 ~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD~aa~l~GslGl~pSa-nig~~~a~fEp~HGSAPdiAGk~i 341 (409)
T 2e0c_A 263 QGKIILNDRIADNMFQQIIIRPEEYDIILAPNVNGDYISDAAGALIGNIGMLGGA-NIGDEGGMFEAIHGTAPKYAGKNV 341 (409)
T ss_dssp TTSEEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHTTSCGGGCEEE-EEETTEEEEEESSCCCGGGTTTTC
T ss_pred CCeEEEEEEEHHHHHHHHhhCcccccEEEECCcchHHHHHHHHHhcCCcccCceE-EECCCceEEecCCCChhhhcCCcc
Confidence 9999999999999999999999999999999999999999999999999999 998 999999999
Q ss_pred CChhHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHcCcccCCCCCC-----CCcHHHHHHHHHHhcC
Q 019198 283 ANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEEKYRTKDLGG-----GCTTQQIVDAVIANLD 344 (344)
Q Consensus 283 ANP~a~Ils~ammL~~lg~~~~a~~i~~Av~~~l~~g~~~T~DlgG-----~~sT~e~~~aV~~~l~ 344 (344)
|||+|+|||++|||+|||+.++|++|++||.++|++|+ +|+|||| .+||+||+|+|+++|+
T Consensus 342 ANP~A~IlS~ammL~~lg~~~~A~~Ie~Av~~~l~~g~-~T~Dl~g~~g~~~~~T~e~~daV~~~l~ 407 (409)
T 2e0c_A 342 ANPTGIIKAGELMLRWMGWNEAADLIEKAINMAIRDKK-VTQDIARFMGVKALGTKEYADELIKIMD 407 (409)
T ss_dssp SCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTC-CCHHHHHHHTSCCCCHHHHHHHHHHHHT
T ss_pred cCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCC-ccccccccCCCCCcCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999995 8999964 6799999999999874
No 18
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus}
Probab=100.00 E-value=2.6e-106 Score=802.78 Aligned_cols=314 Identities=36% Similarity=0.581 Sum_probs=300.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHc----CCCeeEEEEEeeCC-----CCCCcHHHHHHHHhcCeEEEccccCCCCC
Q 019198 28 SPRAVTLIPGDGIGPLVTNAVEQVMEAM----HAPIYFEKYEVHGD-----MKRVPQQVLDSIRKNKVCLKGGLKTPVGG 98 (344)
Q Consensus 28 ~~~~I~vi~GDGIGpEV~~~~~~vl~~~----~~~i~~~~~~~g~~-----g~~lp~~~~~~~~~~da~l~G~~~~p~~~ 98 (344)
.+++|++|||||||||||+++++||+++ +++++|+++++|.+ |+++|++++++||++|++||||+++|.+.
T Consensus 26 ~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~etl~~~k~~da~LkGav~tP~~~ 105 (412)
T 2iv0_A 26 DNPIIPYFEGDGIGKDVVPAAIRVLDAAADKIGKEVVWFQVYAGEDAYKLYGNYLPDDTLNAIKEFRVALKGPLTTPVGG 105 (412)
T ss_dssp SSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHTCCCEEEECCCSHHHHHHHSCSSCHHHHHHHHHHCEEEECCCCCCSSS
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCCCc
Confidence 3589999999999999999999999998 89999999999986 99999999999999999999999999877
Q ss_pred CCCchhHHHHhhcCcEEEEEEeecCCCCCCCcc---cccEEEEecCCceeeeccccee--------------------eC
Q 019198 99 GVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQ---NVDIVVIRENTEGEYSGLEHEV--------------------VP 155 (344)
Q Consensus 99 ~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~~---~vDivIvREnteG~Y~g~e~~~--------------------~~ 155 (344)
+++|+|++|||+||||+|+|||+++||+++|++ ++|||||||||||+|+|.++.. .+
T Consensus 106 ~~~s~~l~LR~~Ldlyan~RPv~~~~g~~splk~~~~vDivIvREnTeg~Y~G~e~~~~~~~~~~v~~~~~~~~~~~~~~ 185 (412)
T 2iv0_A 106 GYRSLNVTIRQVLDLYANVRPVYYLKGVPSPIKHPEKVNFVIFRENTEDVYAGIEWPRGSEEALKLIRFLKNEFGVTIRE 185 (412)
T ss_dssp SSSHHHHHHHHHTTCCEEEEEEECCTTSCCSBSCGGGCEEEEEEECSSSGGGCCEECTTCHHHHHHHHHHHHHHCCCCCT
T ss_pred cccChhHHHHHHcCCeEEEEEEEecCCCCCCCCCcCCCCEEEEecCCCCEeCCcccccCCccccchhhcccccccccCCC
Confidence 889999999999999999999999999999885 6999999999999999998653 23
Q ss_pred CEEEEEEEeeHHHHHHHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHh-hCCC-----------------
Q 019198 156 GVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVAT-KYPS----------------- 217 (344)
Q Consensus 156 ~va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~-eyp~----------------- 217 (344)
++++++++||++++|||+|+||+||++|+|||||+|||+||||+|+|||+++|+||++ +||+
T Consensus 186 ~~a~~~~~~t~~~~eRiar~AFe~A~~r~rkkVt~v~KaNVlk~t~Glf~~~~~eva~~eypd~~~~~~~~~~~~~~~~~ 265 (412)
T 2iv0_A 186 DSGIGIKPISEFATKRLVRMAIRYAIENNRKSVTLVHKGNIMKYTEGAFRDWGYEVAKQEFGEYCITEDELWDKYGGKQP 265 (412)
T ss_dssp TEEEEEEEEEHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTCTTTHHHHHHHHHHHHHHHSTTTEECHHHHHHHHTTCCC
T ss_pred ceEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECccchhhhhHHHHHHHHHHHHHhCCCccccccchhhhcccccc
Confidence 6899999999999999999999999999888999999999999999999999999997 9999
Q ss_pred ---ceeeeeeHhHHHHHHHhCCCCccEEecCCcchhhhhhhhhhhcCCCccccCcccCC------------CcCccCcCC
Q 019198 218 ---IKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGNVG------------NEKVVEQKK 282 (344)
Q Consensus 218 ---I~~~~~~vD~~~~~Lv~~P~~fdVIvt~NlfGDIlSDlaa~l~GglGl~pSa~nig------------APdiaGk~i 282 (344)
|+++|+|||+++||||++|++||||||+|||||||||++|+++||+||+||+ |+| ||||||||+
T Consensus 266 ~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD~aA~l~GslGlapsa-nig~~~a~fEp~HGSAPdiAGk~i 344 (412)
T 2iv0_A 266 EGKIVVKDRIADNMFQQILTRTDEYDVIALPNLNGDYLSDAAAALIGGLGIAPGS-NIGDGIGVFEPVHGSAPKYAGQNK 344 (412)
T ss_dssp TTCEEEEEEEGGGHHHHHHHSGGGCCEEEECHHHHHHHHHHHHHHTTCGGGCEEE-EEETTEEEEEESSCCCSTTTTSSC
T ss_pred CCeEEEEEEEHHHHHHHHhhCcccccEEEECCcchHHHHHHHHHhcCCccccceE-EECCCceEEeCCCCChhhcCCCcc
Confidence 9999999999999999999999999999999999999999999999999999 998 999999999
Q ss_pred CChhHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHcCcccCCCCC---C--CCcHHHHHHHHHHhc
Q 019198 283 ANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEEKYRTKDLG---G--GCTTQQIVDAVIANL 343 (344)
Q Consensus 283 ANP~a~Ils~ammL~~lg~~~~a~~i~~Av~~~l~~g~~~T~Dlg---G--~~sT~e~~~aV~~~l 343 (344)
|||+|+|||++|||+|||+.++|++|++||.+++++|+ +|+||| | .+||+||+|+|+++|
T Consensus 345 ANP~A~IlS~amML~~lg~~~~A~~Ie~Av~~~l~~g~-~T~Dl~~~~G~~~~~T~e~~daV~~~l 409 (412)
T 2iv0_A 345 VNPTAEILTGALMFEYIGWKDASEMIKKAVEMTISSGI-VTYDIHRHMGGTKVGTREFAEAVVENL 409 (412)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTE-ECHHHHHHHCSEECCHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCC-cccccccccCCCCcCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999995 899996 5 579999999999987
No 19
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1
Probab=100.00 E-value=1.6e-105 Score=785.64 Aligned_cols=311 Identities=34% Similarity=0.526 Sum_probs=290.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHc----CCCeeEEEEEeeCC-----CCCCcHHHHHHHHhcCeEEEccccCCCCCCC
Q 019198 30 RAVTLIPGDGIGPLVTNAVEQVMEAM----HAPIYFEKYEVHGD-----MKRVPQQVLDSIRKNKVCLKGGLKTPVGGGV 100 (344)
Q Consensus 30 ~~I~vi~GDGIGpEV~~~~~~vl~~~----~~~i~~~~~~~g~~-----g~~lp~~~~~~~~~~da~l~G~~~~p~~~~~ 100 (344)
|+|+||||||||||||+++++||+++ +++++|+++++|.+ |+++|++++++||++|++||||+++|...+.
T Consensus 2 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~l~Gavg~p~~~~~ 81 (358)
T 1a05_A 2 KKIAIFAGDGIGPEIVAAARQVLDAVDQAAHLGLRCTEGLVGGAALDASDDPLPAASLQLAMAADAVILGAVGGPRWDAY 81 (358)
T ss_dssp CEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCCEEEECCCHHHHHHHHSSSSCHHHHHHHHHCSEEEEEECCCGGGTTS
T ss_pred cEEEEECCCCcCHHHHHHHHHHHHHHHHhcCCceEEEEEeCCcHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCCcccC
Confidence 79999999999999999999999998 79999999999986 9999999999999999999999999953211
Q ss_pred ------CchhHHHHhhcCcEEEEEEeecCCCCC--CCc-----ccccEEEEecCCceeeeccccee--e--CCEEEEEEE
Q 019198 101 ------SSLNVQLRKELDLYAALVNCFNLPGLP--TRH-----QNVDIVVIRENTEGEYSGLEHEV--V--PGVVESLKV 163 (344)
Q Consensus 101 ------~s~~~~LR~~ldlyanvRP~~~~pg~~--~~~-----~~vDivIvREnteG~Y~g~e~~~--~--~~va~~~~~ 163 (344)
.+.++.|||+||||+|+|||+++||+. +|+ +++||+||||||||+|+|.++.. . +++++++++
T Consensus 82 ~~~~~~e~~ll~lRk~ldlyanvRP~~~~pgl~~~splk~~~~~~vDivIvREnteg~Y~g~~~~~~~~~~~~~a~~~~~ 161 (358)
T 1a05_A 82 PPAKRPEQGLLRLRKGLDLYANLRPAQIFPQLLDASPLRPELVRDVDILVVRELTGDIYFGQPRGLEVIDGKRRGFNTMV 161 (358)
T ss_dssp CGGGSHHHHHHHHHHHHTCCEEEEEEECCTTSGGGCSBCHHHHTTCEEEEEEECSSSTTTCSSCEEEEETTEEEEEEEEE
T ss_pred CccccchhhHHHHHHHcCCEEEEEEEEecCCccCCCCCccccCCCceEEEEEecCCCcccCCcCccccCCCCceEEEEEE
Confidence 122899999999999999999999983 676 46999999999999999986432 1 247899999
Q ss_pred eeHHHHHHHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeeeHhHHHHHHHhCCCCccEEe
Q 019198 164 ITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMV 243 (344)
Q Consensus 164 ~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~vD~~~~~Lv~~P~~fdVIv 243 (344)
|||+++|||+|+||++|++| |+|||+|||+|||| +++||+++|+||+++||+|+++|+|||+|+||||++|++|||||
T Consensus 162 ~T~~~~eRiar~AFe~A~~r-rkkVt~v~KaNvlk-~~~lf~~~~~eva~eypdI~~~~~~vD~~~mqlv~~P~~FDViv 239 (358)
T 1a05_A 162 YDEDEIRRIAHVAFRAAQGR-RKQLCSVDKANVLE-TTRLWREVVTEVARDYPDVRLSHMYVDNAAMQLIRAPAQFDVLL 239 (358)
T ss_dssp EEHHHHHHHHHHHHHHHHTT-TSEEEEEECTTTCH-HHHHHHHHHHHHGGGCTTSEEEEEEHHHHHHHHHHCGGGCSEEE
T ss_pred EcHHHHHHHHHHHHHHHHhc-CCeEEEEECCcccc-cchhHHHHHHHHHHHCCCceEEeeeHHHHHHHHHhCCCcccEEE
Confidence 99999999999999999999 89999999999999 79999999999999999999999999999999999999999999
Q ss_pred cCCcchhhhhhhhhhhcCCCccccCcccCC------------CcCccCcCCCChhHHHHHHHHHhhh-cCchHHHHHHHH
Q 019198 244 TPNLYGNLVSNTAAGIAGGTGVMPGAGNVG------------NEKVVEQKKANPVALLLSSAMMLRH-LQFPSFADRLET 310 (344)
Q Consensus 244 t~NlfGDIlSDlaa~l~GglGl~pSa~nig------------APdiaGk~iANP~a~Ils~ammL~~-lg~~~~a~~i~~ 310 (344)
|+|||||||||++|+++||+||+||+ |+| ||||||||+|||+|+|||++|||+| ||+.++|++|++
T Consensus 240 t~NlfGDIlSD~aa~l~GslGl~pSa-nig~~~~~fEpvHGSAPdiAGk~iANP~A~IlS~ammL~~~lg~~~~A~~Ie~ 318 (358)
T 1a05_A 240 TGNMFGDILSDEASQLTGSIGMLPSA-SLGEGRAMYEPIHGSAPDIAGQDKANPLATILSVAMMLRHSLNAEPWAQRVEA 318 (358)
T ss_dssp ECHHHHHHHHHHHHHTTSCGGGCEEE-EECSSCEEEEESSCCCGGGTTTTCSCCHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred ecCcccHhHHHHHHhhcCCcccccee-eeCCCceeeecCCCChhHhcCCCccCcHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999 998 9999999999999999999999999 999999999999
Q ss_pred HHHHHHHcCcccCCCCCC---C-CcHHHHHHHHHHhcC
Q 019198 311 AVKRVISEEKYRTKDLGG---G-CTTQQIVDAVIANLD 344 (344)
Q Consensus 311 Av~~~l~~g~~~T~DlgG---~-~sT~e~~~aV~~~l~ 344 (344)
||.++|++| .+|+||+| + +||+||+|+|+++|+
T Consensus 319 Av~~~l~~g-~~T~Dl~g~g~~~~~T~e~~daV~~~l~ 355 (358)
T 1a05_A 319 AVQRVLDQG-LRTADIAAPGTPVIGTKAMGAAVVNALN 355 (358)
T ss_dssp HHHHHHHTT-CCCGGGCCTTSCCCCHHHHHHHHHHTTT
T ss_pred HHHHHHHcC-CcCcccccCCCCCcCHHHHHHHHHHHhh
Confidence 999999999 59999953 6 899999999999883
No 20
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans}
Probab=100.00 E-value=2.5e-105 Score=798.64 Aligned_cols=314 Identities=34% Similarity=0.551 Sum_probs=299.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHc-------CCCeeEEEEEeeCC-----CC--CCcHHHHHHHHhcCeEEEcccc
Q 019198 28 SPRAVTLIPGDGIGPLVTNAVEQVMEAM-------HAPIYFEKYEVHGD-----MK--RVPQQVLDSIRKNKVCLKGGLK 93 (344)
Q Consensus 28 ~~~~I~vi~GDGIGpEV~~~~~~vl~~~-------~~~i~~~~~~~g~~-----g~--~lp~~~~~~~~~~da~l~G~~~ 93 (344)
.+++|++|||||||||||+++++||+++ +++|+|+++++|.+ |+ ++|++++++|+++|++||||++
T Consensus 25 ~~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~~~lp~etl~~~k~~da~lkGav~ 104 (429)
T 2d4v_A 25 DQPIIPFIEGDGIGCDVTPAMRSVVDAAVAKVYGGQRQIAWMELFAGQKAVQLYGEGQYLPDETMAAIREYKVAIKGPLE 104 (429)
T ss_dssp SSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEECCTHHHHHHHCTTCSSCHHHHHHHHHHCEEEECCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHHhhcCCCCceEEEEEeeehhhhhccCCCCCCcHHHHHHHHHCCEEEECCcc
Confidence 4589999999999999999999999997 38999999999976 88 9999999999999999999999
Q ss_pred CCCCCCCCchhHHHHhhcCcEEEEEEeecCCCCCCCcc---cccEEEEecCCceeeeccccee-----------------
Q 019198 94 TPVGGGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQ---NVDIVVIRENTEGEYSGLEHEV----------------- 153 (344)
Q Consensus 94 ~p~~~~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~~---~vDivIvREnteG~Y~g~e~~~----------------- 153 (344)
+|.+.+++|+|++|||+||||+|+|||+++||+++|++ ++|||||||||||+|+|.|+..
T Consensus 105 tP~~~~~~s~~l~LRk~LdLyanvRPv~~~~gv~splk~~~~vDivIvREnTeg~Y~G~e~~~~~~~~~~v~~~~~~~~~ 184 (429)
T 2d4v_A 105 TPVGGGIRSLNVAMRQDLDLYVCLRPVRYFEGTPSPMRHPEKVDMVIFRENSEDIYAGIEWPAGSPEAEKIIRFLREEMG 184 (429)
T ss_dssp CCSSSSSCCHHHHHHHHTTCCEEEEEEECCTTCCCSBSCGGGCEEEEEEECSCGGGGCCEECTTCHHHHHHHHHHHHTSC
T ss_pred CCCcccccChhHHHHHHcCCEEEEEEEEecCCCCCCCCCcCCCCEEEEEeCCCCeecCcccccCCcccccceeccccccc
Confidence 99877889999999999999999999999999999885 6999999999999999998652
Q ss_pred ------eCCEEEEEEEeeHHHHHHHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHh-hCCC---------
Q 019198 154 ------VPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVAT-KYPS--------- 217 (344)
Q Consensus 154 ------~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~-eyp~--------- 217 (344)
.+++++++++|||+++|||+|+||+||++|+|||||+|||+||||+|+|||+++|+||++ +||+
T Consensus 185 ~~~~~~~~~~a~~~~~~T~~~~eRIar~AFe~A~~r~rkkVT~v~KaNVlk~tdGlf~~~~~eva~~eypd~~~~~~~~~ 264 (429)
T 2d4v_A 185 VTKIRFPDSSAIGIKPVSTEGSERLIRRTIQYALEHGKPSVSLVHKGNIMKFTEGGFRDWGYALAEREFAGRVFTWRQKA 264 (429)
T ss_dssp CCCCSCGGGEEEEEEEEEHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTSTTTHHHHHHHHHHHHHHHSTTTEEEHHHHH
T ss_pred cccccCCCceEEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEECCccchhhhHHHHHHHHHHHHHhCCCccccccccc
Confidence 235899999999999999999999999999888999999999999999999999999997 9999
Q ss_pred -----------------------ceeeeeeHhHHHHHHHhCCCCccEEecCCcchhhhhhhhhhhcCCCccccCcccCC-
Q 019198 218 -----------------------IKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGNVG- 273 (344)
Q Consensus 218 -----------------------I~~~~~~vD~~~~~Lv~~P~~fdVIvt~NlfGDIlSDlaa~l~GglGl~pSa~nig- 273 (344)
|+++|+|||+++||||++|++||||||+|||||||||++|+++||+||+||+ |||
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~fDVivt~NlfGDILSD~aA~l~GslGl~pSa-nig~ 343 (429)
T 2d4v_A 265 AISKAEGKAAGQKAEQQAIADGKLIIKDVIADNFLQQILLRPEDYSVVATLNLNGDYVSDALAAEVGGIGMAPGA-NLSD 343 (429)
T ss_dssp HHHHHHCHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHCGGGCCEEEECHHHHHHHHHHHHHHTTCGGGCCCE-EECS
T ss_pred cccccccccccchhccccccCCeeEEEEeeHHHHHHHHhhCcccCcEEEECCcccHHHHHHHHHhcCCHhhcCee-EECC
Confidence 9999999999999999999999999999999999999999999999999999 998
Q ss_pred -----------CcCccCcCCCChhHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHcCcccCCCCCC------CCcHHHHH
Q 019198 274 -----------NEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEEKYRTKDLGG------GCTTQQIV 336 (344)
Q Consensus 274 -----------APdiaGk~iANP~a~Ils~ammL~~lg~~~~a~~i~~Av~~~l~~g~~~T~DlgG------~~sT~e~~ 336 (344)
||||||||+|||+|+|||++|||+|||+.++|++|++||.++|++|. +|+|||| .+||+||+
T Consensus 344 ~~a~fEpvHGSAPdiAGk~iANP~A~IlS~amML~hlg~~~~A~~Ie~Av~~~l~~g~-~T~Dlg~~~~g~~~~~T~e~~ 422 (429)
T 2d4v_A 344 THAIFEATHGTAPDIAGQGKANPSSLILSAVMMLEHLGWGEAAQAIVAAMNATIAAGE-VTGDLAALRGDVPALSTTEFT 422 (429)
T ss_dssp SCEEEECSCCCCTTTTTTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-EEHHHHTTCTTCCEECHHHHH
T ss_pred CceEEecCCCChhHhcCCCCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCC-ccccccccCCCCCCcCHHHHH
Confidence 99999999999999999999999999999999999999999999995 8999974 47999999
Q ss_pred HHHHHhc
Q 019198 337 DAVIANL 343 (344)
Q Consensus 337 ~aV~~~l 343 (344)
|+|+++|
T Consensus 423 daV~~~l 429 (429)
T 2d4v_A 423 AALIRRF 429 (429)
T ss_dssp HHHHTTC
T ss_pred HHHHhhC
Confidence 9999875
No 21
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1
Probab=100.00 E-value=2.4e-105 Score=798.10 Aligned_cols=315 Identities=34% Similarity=0.548 Sum_probs=300.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHc-------CCCeeEEEEEeeCC-----CCCCcHHHHHHHHhcCeEEEccccCC
Q 019198 28 SPRAVTLIPGDGIGPLVTNAVEQVMEAM-------HAPIYFEKYEVHGD-----MKRVPQQVLDSIRKNKVCLKGGLKTP 95 (344)
Q Consensus 28 ~~~~I~vi~GDGIGpEV~~~~~~vl~~~-------~~~i~~~~~~~g~~-----g~~lp~~~~~~~~~~da~l~G~~~~p 95 (344)
.+++|++|||||||||||+++++||+++ +++++|+++++|.+ |+++|++++++|+++|++||||+++|
T Consensus 18 ~~~~I~vipGDGIGpEI~~~a~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~lkGav~tP 97 (423)
T 1hqs_A 18 NNPIIPFIEGDGTGPDIWNAASKVLEAAVEKAYKGEKKITWKEVYAGEKAYNKTGEWLPAETLDVIREYFIAIKGPLTTP 97 (423)
T ss_dssp SSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCCTHHHHHHHSCSSCHHHHHHHHHHCEEEECCCCCC
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCHHHHHhhCCcCcHHHHHHHHHCCEEEECCccCC
Confidence 4589999999999999999999999997 38999999999976 99999999999999999999999999
Q ss_pred CCCCCCchhHHHHhhcCcEEEEEEeecCCCCCCCcc---cccEEEEecCCceeeeccccee-------------------
Q 019198 96 VGGGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQ---NVDIVVIRENTEGEYSGLEHEV------------------- 153 (344)
Q Consensus 96 ~~~~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~~---~vDivIvREnteG~Y~g~e~~~------------------- 153 (344)
.+.+++|+|++|||+||||+|+|||+++||+++|++ ++|||||||||||+|+|.++..
T Consensus 98 ~~~~~~s~nl~LRk~LdlyanvRPv~~~pg~~splk~~~~vDivIvREnteg~Y~G~e~~~g~~~~~~v~~~~~~~~~~~ 177 (423)
T 1hqs_A 98 VGGGIRSLNVALRQELDLFVCLRPVRYFTGVPSPVKRPEDTDMVIFRENTEDIYAGIEYAKGSEEVQKLISFLQNELNVN 177 (423)
T ss_dssp SSSSSCCHHHHHHHHTTCCEEEEEEECCTTCCCSBSCGGGCEEEEEEECSCGGGGCCEECTTCHHHHHHHHHHHHHSCCC
T ss_pred CCcCcCChhHHHHHHcCCEEEEEEEeccCCCCCCCCCCCCCcEEEEecCCCCeecccccccCCccccceecccccccccc
Confidence 877889999999999999999999999999999885 6999999999999999998652
Q ss_pred ----eCCEEEEEEEeeHHHHHHHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHh-hCCC-----------
Q 019198 154 ----VPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVAT-KYPS----------- 217 (344)
Q Consensus 154 ----~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~-eyp~----------- 217 (344)
.+++++++++|||+++|||+|+||+||++|+|++||+|||+||||+|+|||+++|+||++ +||+
T Consensus 178 ~~~~~~~~a~~~~~~T~~~~eRiar~AFe~A~~r~rkkVt~v~KaNVlk~t~Glf~~~~~eva~~eypd~~~~~~~~~~~ 257 (423)
T 1hqs_A 178 KIRFPETSGIGIKPVSEEGTSRLVRAAIDYAIEHGRKSVTLVHKGNIMKFTEGAFKNWGYELAEKEYGDKVFTWAQYDRI 257 (423)
T ss_dssp CCSCGGGEEEEEEEEEHHHHHHHHHHHHHHHHHHTCSEEEEEECTTTSTTTHHHHHHHHHHHHHHHHGGGEEEHHHHHHH
T ss_pred ccccCCceEEEEEEEcHHHHHHHHHHHHHHHHHcCCCcEEEEECCccchhhhHHHHHHHHHHHHHhCCCcccchhhhccc
Confidence 236899999999999999999999999999889999999999999999999999999997 9999
Q ss_pred ---------------------ceeeeeeHhHHHHHHHhCCCCccEEecCCcchhhhhhhhhhhcCCCccccCcccCC---
Q 019198 218 ---------------------IKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGNVG--- 273 (344)
Q Consensus 218 ---------------------I~~~~~~vD~~~~~Lv~~P~~fdVIvt~NlfGDIlSDlaa~l~GglGl~pSa~nig--- 273 (344)
|+++|+|||+|+||||++|++||||||+|||||||||++|+++||+||+||+ |||
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD~aA~l~GslGl~pSa-nigp~~ 336 (423)
T 1hqs_A 258 AEEQGKDAANKAQSEAEAAGKIIIKDSIADIFLQQILTRPNEFDVVATMNLNGDYISDALAAQVGGIGIAPGA-NINYET 336 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCTTTCEEE-EECTTT
T ss_pred cccccccccccccccccccCeEEEEEeeHHHHHHHHhhCCCCccEEEECCcchHHHHHHHHhhcCCcccCccc-eecCCC
Confidence 8899999999999999999999999999999999999999999999999999 998
Q ss_pred -----------CcCccCcCCCChhHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHcCcccCCCCCC------CCcHHHHH
Q 019198 274 -----------NEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEEKYRTKDLGG------GCTTQQIV 336 (344)
Q Consensus 274 -----------APdiaGk~iANP~a~Ils~ammL~~lg~~~~a~~i~~Av~~~l~~g~~~T~DlgG------~~sT~e~~ 336 (344)
||||||||+|||+|+|||++|||+|||+.++|++|++||.++|++|. +|+|||| .+||+||+
T Consensus 337 ~~alfEp~HGSAPdiAGk~iANP~A~IlS~amML~hlg~~~~A~~Ie~Av~~~l~~g~-~T~Dl~g~~~g~~~~~T~e~~ 415 (423)
T 1hqs_A 337 GHAIFEATHGTAPKYAGLDKVNPSSVILSGVLLLEHLGWNEAADLVIKSMEKTIASKV-VTYDFARLMDGATEVKCSEFG 415 (423)
T ss_dssp CCEEEEESCCCCGGGTTTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTE-ECHHHHTTSSSCEECCHHHHH
T ss_pred CceEEecCCCChhhhCCCCCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCC-cccccccccCCCCCcCHHHHH
Confidence 99999999999999999999999999999999999999999999995 8999976 68999999
Q ss_pred HHHHHhcC
Q 019198 337 DAVIANLD 344 (344)
Q Consensus 337 ~aV~~~l~ 344 (344)
|+|+++|+
T Consensus 416 daV~~~l~ 423 (423)
T 1hqs_A 416 EELIKNMD 423 (423)
T ss_dssp HHHHHTCC
T ss_pred HHHHHhhC
Confidence 99999985
No 22
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A*
Probab=100.00 E-value=9e-105 Score=795.79 Aligned_cols=313 Identities=34% Similarity=0.554 Sum_probs=299.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHc-------CCCeeEEEEEeeCC-----CCCCcHHHHHHHHhcCeEEEccccCC
Q 019198 28 SPRAVTLIPGDGIGPLVTNAVEQVMEAM-------HAPIYFEKYEVHGD-----MKRVPQQVLDSIRKNKVCLKGGLKTP 95 (344)
Q Consensus 28 ~~~~I~vi~GDGIGpEV~~~~~~vl~~~-------~~~i~~~~~~~g~~-----g~~lp~~~~~~~~~~da~l~G~~~~p 95 (344)
.+++|+||||||||||||+++++||+++ +++|+|+++++|.+ |+++|++++++|+++|++||||+++|
T Consensus 34 ~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~etl~~~k~~da~LkGav~tP 113 (435)
T 1tyo_A 34 DNPVVAFIRGDGVGPEVVESALKVVDAAVKKVYGGSRRIVWWELLAGHLAREKCGELLPKATLEGIRLARVALKGPLETP 113 (435)
T ss_dssp SSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCCSHHHHHHHSSSSCHHHHHHHHHHSEEEECCCCCC
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHHHHHHhhcCCCcceEEEEEechHHHHHhhCCcCCHHHHHHHHhCCeEEECCccCC
Confidence 3589999999999999999999999997 38999999999976 99999999999999999999999999
Q ss_pred CCCCCCchhHHHHhhcCcEEEEEEeecCCCCCCCcc---cccEEEEecCCceeeeccccee-------------------
Q 019198 96 VGGGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQ---NVDIVVIRENTEGEYSGLEHEV------------------- 153 (344)
Q Consensus 96 ~~~~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~~---~vDivIvREnteG~Y~g~e~~~------------------- 153 (344)
.+++++|+|++|||+||||+|+|||+++ |+++|++ ++|||||||||||+|+|.++..
T Consensus 114 ~~~~~~s~~l~LRk~LdlyanlRPv~~~-gv~splk~~~~vDivIvREnTeg~Y~G~e~~~~~~~~~~v~~~~~~~~~~~ 192 (435)
T 1tyo_A 114 VGTGYRSLNVAIRQALDLYANIRPVRYY-GQPAPHKYADRVDMVIFRENTEDVYAGIEWPHDSPEAARIRRFLAEEFGIS 192 (435)
T ss_dssp TTSCTTHHHHHHHHHHTCCEEEEEEECC-SCCCSBTTGGGCEEEEEEECSSSGGGCCEECTTSHHHHHHHHHHHHHHCCC
T ss_pred CcccccChhHHHHHHcCCEEEeEEEEec-CCCCCCCCcCCCcEEEEecCCCCeecccccccCCccccceeccchhhcccc
Confidence 8778899999999999999999999999 9999985 5999999999999999998742
Q ss_pred -eCCEEEEEEEeeHHHHHHHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHh-hCCC--------------
Q 019198 154 -VPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVAT-KYPS-------------- 217 (344)
Q Consensus 154 -~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~-eyp~-------------- 217 (344)
.+++++++++|||+++|||+|+||+||++|+|++||+|||+||||+|+|||+++|+||++ +||+
T Consensus 193 ~~~~~a~~~~~~T~~~~eRIar~AFe~A~~r~rkkVT~v~KaNVlk~tdGlf~~~~~eva~~eypd~~~~e~~~~~~~~~ 272 (435)
T 1tyo_A 193 IREDAGIGVKPISRFATRRLMERALEWALRNGNTVVTIMHKGNIMKYTEGAFMRWAYEVALEKFREHVVTEQEVQEKYGG 272 (435)
T ss_dssp CCTTEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEEECTTTSTTTHHHHHHHHHHHHHHHSGGGEEEHHHHHHHSTT
T ss_pred CCCCeEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhhhHHHHHHHHHHHHHhCCCcccccccccccccc
Confidence 246899999999999999999999999999889999999999999999999999999997 9999
Q ss_pred ------ceeeeeeHhHHHHHHHhCCCCccEEecCCcchhhhhhhhhhhcCCCccccCcccCC------------CcCccC
Q 019198 218 ------IKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGNVG------------NEKVVE 279 (344)
Q Consensus 218 ------I~~~~~~vD~~~~~Lv~~P~~fdVIvt~NlfGDIlSDlaa~l~GglGl~pSa~nig------------APdiaG 279 (344)
|+++|+|||+|+||||++|++||||||+|||||||||++|+++||+||+||+ |+| ||||||
T Consensus 273 ~~~~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD~aA~l~GslGlapSa-nig~~~a~fEpvHGSAPdiAG 351 (435)
T 1tyo_A 273 VRPEGKILVNDRIADNMLQQIITRPWDYQVIVAPNLNGDYISDAASALVGGIGMAAGM-NMGDGIAVAEPVHGTAPKYAG 351 (435)
T ss_dssp CCCTTCEEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCGGGCEEE-EECSSCEEEEESSCCCGGGTT
T ss_pred cccCCeEEEEeeeHHHHHHHHhhCCCCceEEEEcccchHHHHHHHHhhcCCcccCcee-eECCCceeeecCCCChHHhcC
Confidence 9999999999999999999999999999999999999999999999999999 998 999999
Q ss_pred cCCCChhHHHHHHHHHh-hhcCchHHHHHHHHHHHHHHHcCcccCCCCCC------CCcHHHHHHHHHHhc
Q 019198 280 QKKANPVALLLSSAMML-RHLQFPSFADRLETAVKRVISEEKYRTKDLGG------GCTTQQIVDAVIANL 343 (344)
Q Consensus 280 k~iANP~a~Ils~ammL-~~lg~~~~a~~i~~Av~~~l~~g~~~T~DlgG------~~sT~e~~~aV~~~l 343 (344)
||+|||+|+|||++||| +|||+.++|++|++||.++|++|. +|+|||| .+||+||+|+|+++|
T Consensus 352 k~iANP~A~IlS~amML~~hlg~~~~A~~Ie~Av~~~l~~g~-~T~Dlgg~~~g~~~~~T~e~~daV~~~l 421 (435)
T 1tyo_A 352 KDLINPSAEILSASLLIGEFMGWREVKSIVEYAIRKAVQSKK-VTQDLARHMPGVQPLRTSEYTETLIAYI 421 (435)
T ss_dssp SSCSCCHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHTTC-CBHHHHTTSTTCCCBCHHHHHHHHHHHH
T ss_pred CCCcCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCC-cCccccccCCCCCCcCHHHHHHHHHHHH
Confidence 99999999999999999 999999999999999999999995 8999986 579999999999987
No 23
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti}
Probab=100.00 E-value=1.6e-99 Score=756.87 Aligned_cols=311 Identities=19% Similarity=0.206 Sum_probs=290.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEeeCC-----CCCCcHHHHHHHHhcCeEEEccccCCCC----
Q 019198 27 GSPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD-----MKRVPQQVLDSIRKNKVCLKGGLKTPVG---- 97 (344)
Q Consensus 27 ~~~~~I~vi~GDGIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~-----g~~lp~~~~~~~~~~da~l~G~~~~p~~---- 97 (344)
+-+++|++|||||||||||+++++||++.+++++|+++++|.+ |+++|++++++||++|++||||+++|..
T Consensus 28 ~~~~~I~vipGDGIGpEI~~~~~~vL~~~~~~i~~~~~~~G~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~~~~~ 107 (427)
T 3us8_A 28 KVANPVVELDGDEMTRIIWQFIKDKLIHPYLDLDLEYYDLGVENRDATDDQVTIDAANAIKKHGVGVKCATITPDEGRVE 107 (427)
T ss_dssp ECCSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECCHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHHHHH
T ss_pred cccceEEEEcCCcccHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCCccccc
Confidence 4568999999999999999999999999999999999999975 8999999999999999999999999963
Q ss_pred -----CCCCchhHHHHhhcCcEEEEEEeecCCCCCCCcc--cccEEEEecCCceeeecccceee----------------
Q 019198 98 -----GGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQ--NVDIVVIRENTEGEYSGLEHEVV---------------- 154 (344)
Q Consensus 98 -----~~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~~--~vDivIvREnteG~Y~g~e~~~~---------------- 154 (344)
++++|+|++|||+||||+|+||+ .+++++++.+ ++|++||||||||+|+|.|+...
T Consensus 108 e~~l~~~~~s~n~~LRk~LdlyanvRPv-~~~~ip~~~~~~~~DivIvREnteg~Y~g~e~~~~~~~~~~l~~~~~~G~~ 186 (427)
T 3us8_A 108 EFKLKKMWKSPNGTIRNILGGVIFREPI-ICKNVPRLVPGWTKPIIVGRHAFGDQYRATDFKFPGKGKLSIKFVGEDGQT 186 (427)
T ss_dssp HHTCSSCCCCHHHHHHHHHCSEEEEEEC-CCTTSCCSSTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEETTSCE
T ss_pred cccccccccCchHHHHHHhCCeEEecce-eccCCCCCCCCCCCCEEEEEeCCCCccCCceeEEecCCcceeeeecccccc
Confidence 57889999999999999999999 6666665543 59999999999999999987642
Q ss_pred ----------CCEEEEEEEeeHHHHHHHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHh-hCC------C
Q 019198 155 ----------PGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVAT-KYP------S 217 (344)
Q Consensus 155 ----------~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~-eyp------~ 217 (344)
++++ ...++||+++|||+|+||+||++| ++|||+|||+||||.|||||+++|+||++ +|| +
T Consensus 187 ~~~~~~~~~~~~va-~~~~~T~~~~eRiar~AFe~A~~r-~kkVt~v~KaNIlk~tdglfr~~~~eva~~eYp~~~~~~~ 264 (427)
T 3us8_A 187 IEHDVYDAPGAGVA-LAMYNLDESITEFARASFNYGLQR-KVPVYLSTKNTILKAYDGRFKDIFQKVFDEEFAAQFKAEK 264 (427)
T ss_dssp EEEEEEEESSCEEE-EEEEEEHHHHHHHHHHHHHHHHHH-TCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHHHTT
T ss_pred ccccccccCCCcEE-EEEeeCHHHHHHHHHHHHHHHHHc-CCcEEEEECcccchhhhhHHHHHHHHHHHHhCccccCCCC
Confidence 2455 567889999999999999999999 68999999999999999999999999998 996 9
Q ss_pred ceeeeeeHhHHHHHHHhCCCCccEEecCCcchhhhhhhhhhhcCCCccccCcccCC--------------CcC-----cc
Q 019198 218 IKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGNVG--------------NEK-----VV 278 (344)
Q Consensus 218 I~~~~~~vD~~~~~Lv~~P~~fdVIvt~NlfGDIlSDlaa~l~GglGl~pSa~nig--------------APd-----ia 278 (344)
|+++|++||+||||||++|++| ||||+|||||||||++|+++|||||+||+ |+| ||| ||
T Consensus 265 I~~~~~~VD~~~mqlv~~P~~F-Vivt~NlfGDIlSD~aA~l~GslGl~pSa-nig~~~~~a~fEp~HGSAPd~~~~~iA 342 (427)
T 3us8_A 265 LWYEHRLIDDMVASALKWSGGY-VWACKNYDGDVQSDIVAQGFGSLGLMTSV-LMTPDGKTVEAEAAHGTVTRHYRQHQK 342 (427)
T ss_dssp CCEEEEEHHHHHHHHHHSCCCE-EEEECHHHHHHHHHHHHHHHSCTTSEEEE-EECTTSCCEEEECCSCCCHHHHHHHHT
T ss_pred eEEEEEEHHHHHHHHhhCCCCc-EEEeCCcCCcHHHHHHHHhcCChhhCcee-EECCCCCeEEEeCCCCCcCCccchhcC
Confidence 9999999999999999999999 99999999999999999999999999999 997 999 99
Q ss_pred CcCC-CChhHHHHHHHHHhhhcCc-------hHHHHHHHHHHHHHHHcCcccCCCCCC-------CCcHHHHHHHHHHhc
Q 019198 279 EQKK-ANPVALLLSSAMMLRHLQF-------PSFADRLETAVKRVISEEKYRTKDLGG-------GCTTQQIVDAVIANL 343 (344)
Q Consensus 279 Gk~i-ANP~a~Ils~ammL~~lg~-------~~~a~~i~~Av~~~l~~g~~~T~DlgG-------~~sT~e~~~aV~~~l 343 (344)
|||+ |||+|+|||++|||+|||+ .++|++|++||.+++++|+ +|+|||| .+||+||+|+|+++|
T Consensus 343 Gk~i~ANP~A~IlS~ammL~hlG~~~~~~~l~~~A~~Ie~Av~~~l~~g~-~T~Dlgg~~~~~~~~~~T~e~~daV~~~l 421 (427)
T 3us8_A 343 GEETSTNSIASIFAWTRGLAHRAKLDGNAELAKFSETLERVCVDTVESGF-MTKDLALLIGPDQPWLSTTGFLDKIDENL 421 (427)
T ss_dssp TCCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTC-CBHHHHHHHCTTCCCBCHHHHHHHHHHHH
T ss_pred CCCceeCHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHcCC-cCcccccccccCCcccCHHHHHHHHHHHH
Confidence 9998 9999999999999999997 7899999999999999995 9999988 799999999999987
No 24
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A*
Probab=100.00 E-value=2e-98 Score=745.71 Aligned_cols=311 Identities=20% Similarity=0.202 Sum_probs=289.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEeeCC-----CCCCcHHHHHHHHhcCeEEEccccCCCC-----
Q 019198 28 SPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD-----MKRVPQQVLDSIRKNKVCLKGGLKTPVG----- 97 (344)
Q Consensus 28 ~~~~I~vi~GDGIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~-----g~~lp~~~~~~~~~~da~l~G~~~~p~~----- 97 (344)
-+++|++|||||||||||++++++|++++++++|+++++|.+ |+++|++++++|+++|++||||+++|..
T Consensus 5 ~~~~i~~i~GDgig~ei~~~~~~vl~~~~~~~~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkGav~tP~~~~~~~ 84 (402)
T 2uxq_A 5 MKTPLVELDGDEMTRVLWPLIKDKLLLPFIDLQTEYYDLGIEERDRTNDQITIDAAEAIKKYGVGVKNATITPNQDRVEE 84 (402)
T ss_dssp CSSCEEEEECCHHHHHHHHHHHHHHTTTTBCCCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHHHHHH
T ss_pred eecceEEecCCCccHHHHHHHHHHHHhCCCCeEEEEEecCHHHHHhhCCcCCHHHHHHHHhCCEEEECCccCCCcccCcc
Confidence 468999999999999999999999999999999999999976 9999999999999999999999999962
Q ss_pred ----CCCCchhHHHHhhcCcEEEEEEeecCCCCCCCcc--cccEEEEecCCceeeecccceee-----------------
Q 019198 98 ----GGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQ--NVDIVVIRENTEGEYSGLEHEVV----------------- 154 (344)
Q Consensus 98 ----~~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~~--~vDivIvREnteG~Y~g~e~~~~----------------- 154 (344)
++++|+|++||++||||+|+|||+ +|+++++++ ++|++|+||||||+|+|.++...
T Consensus 85 ~~~~~~~~s~~l~LR~~ldlyan~RPv~-~~~~~~~~~~~~~divIvRE~teg~Y~g~e~~~~~~g~~~~~~~~~~g~~~ 163 (402)
T 2uxq_A 85 YGLKEQWKSPNATVRAMLDGTVFRKPIM-VKNIKPSVRSWQKPIVVGRHAYGDFYKNAEIFAEAGGKLEIVVTDKNGKET 163 (402)
T ss_dssp HTCSSCCCCHHHHHHHHHCCEEEEEECC-CTTCCCSBTTCCSCCEEEEECSCGGGGCEEEEETTCEEEEEEEECTTSCEE
T ss_pred ccccccccCchHHHHHHhCCeEEEEEEE-cCCCCCCCCCCCCCeEEEeccCCCcccCcceeeccCCcceeeeeccCCccc
Confidence 367899999999999999999998 799987764 59999999999999998765530
Q ss_pred --------CCEEEEEEEeeHHHHHHHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHH-hhCCC------ce
Q 019198 155 --------PGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVA-TKYPS------IK 219 (344)
Q Consensus 155 --------~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva-~eyp~------I~ 219 (344)
.+.+....++|++++|||+|+||+||++| ++|||+|||+||||.|||||+++|+||+ ++||+ |+
T Consensus 164 ~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r-~~kVt~v~KaNVlk~sdglf~~~~~eva~~eypd~~~~~~I~ 242 (402)
T 2uxq_A 164 RQTIMEVDEPAIVQGIHNTVASIGHFARACFEYSLDQ-KIDCWFATKDTISKQYDQRFKIIFEEIFAQEYKEKFAAAGIE 242 (402)
T ss_dssp EEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHH-TCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHHHHTCC
T ss_pred cccccccCCCceEEEEEECHHHHHHHHHHHHHHHHHc-CCcEEEEECCCcchhhHHHHHHHHHHHHHHhCCCcccCCeEE
Confidence 13455566799999999999999999999 7899999999999999999999999999 69999 99
Q ss_pred eeeeeHhHHHHHHHhCCCCccEEecCCcchhhhhhhhhhhcCCCccccCcccCC-------------CcCc-----cCcC
Q 019198 220 YNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGNVG-------------NEKV-----VEQK 281 (344)
Q Consensus 220 ~~~~~vD~~~~~Lv~~P~~fdVIvt~NlfGDIlSDlaa~l~GglGl~pSa~nig-------------APdi-----aGk~ 281 (344)
++|+|||+||||||++|++| ||||+|||||||||++|+++||+||+||+ |+| |||| ||||
T Consensus 243 ~~~~~vD~~~mqlv~~P~~f-Vivt~NlfGDIlSD~aA~l~GslGl~pSa-nig~~~~~lfEpvHGSAPdi~~~~~aGk~ 320 (402)
T 2uxq_A 243 YFYTLIDDVVARMMKTEGGM-LWACKNYDGDVMSDMVASAFGSLAMMSSV-LVSPYGYFEYEAAHGTVQRHYYQHLKGER 320 (402)
T ss_dssp EEEEEHHHHHHHHTTCCCCS-EEEECHHHHHHHHHHHHHHHTCTTSEEEE-EECTTSCEEEECCSCCCHHHHHHHHTTCC
T ss_pred EEEEEHHHHHHHHccCCCce-EEEEcccchHHHHHHHHHhcCCccccccc-eecCCCCeEEeCCCCChhhhhhhhhcCCC
Confidence 99999999999999999999 99999999999999999999999999999 998 9998 9999
Q ss_pred C-CChhHHHHHHHHHhhhcCchH-------HHHHHHHHHHHHHHcCcccCCCCCC--------CCcHHHHHHHHHHhc
Q 019198 282 K-ANPVALLLSSAMMLRHLQFPS-------FADRLETAVKRVISEEKYRTKDLGG--------GCTTQQIVDAVIANL 343 (344)
Q Consensus 282 i-ANP~a~Ils~ammL~~lg~~~-------~a~~i~~Av~~~l~~g~~~T~DlgG--------~~sT~e~~~aV~~~l 343 (344)
+ |||+|+|||++|||+|||+.+ +|++|++||.+++++| .+|+|||| .+||+||+|+|+++|
T Consensus 321 ~~ANP~A~IlS~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~l~~G-~~T~Dlgg~~~g~~~~~~~T~e~~daI~~~l 397 (402)
T 2uxq_A 321 TSTNPVALIYAWTGALRKRGELDGTPDLCAFCDSLEAITIECIESG-YMTGDLARICEPAAIKVLDSIEFIDELGKRL 397 (402)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTT-EECHHHHTTCSSCCSEECCHHHHHHHHHHHH
T ss_pred cccCcHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHHcC-CcCccccccCCCCCCCCcCHHHHHHHHHHHH
Confidence 6 999999999999999999866 7999999999999999 58999976 589999999999987
No 25
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A*
Probab=100.00 E-value=2.6e-96 Score=732.81 Aligned_cols=312 Identities=21% Similarity=0.231 Sum_probs=287.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEeeCC-----CCCCcHHHHHHHHhcCeEEEccccCCCC----
Q 019198 27 GSPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD-----MKRVPQQVLDSIRKNKVCLKGGLKTPVG---- 97 (344)
Q Consensus 27 ~~~~~I~vi~GDGIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~-----g~~lp~~~~~~~~~~da~l~G~~~~p~~---- 97 (344)
+-+++|++|||||||||||++++++|...+++++|+++++|.+ |+++|++++++|+++|++||||+++|..
T Consensus 6 ~~~~~i~~l~GDgiGpei~~~~~~vl~~~~~~~~~~~~~~G~~~~~~~g~~lp~etl~~ik~~da~LkGav~tP~~~~~~ 85 (413)
T 1lwd_A 6 KVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEARVE 85 (413)
T ss_dssp ECSSCEEEEECCHHHHHHHHHHHHHTTTTTEECCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHHHHH
T ss_pred eecccEEEecCCChhHHHHHHHHHHHHhCCCCeEEEEEecCHHHHhccCCcCcHHHHHHHHHCCEEEECCccCCCcccCc
Confidence 3457899999999999999999999998899999999999986 9999999999999999999999999962
Q ss_pred -----CCCCchhHHHHhhcCcEEEEEEeecCCCCCCCcc--cccEEEEecCCceeeecccceee----------------
Q 019198 98 -----GGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQ--NVDIVVIRENTEGEYSGLEHEVV---------------- 154 (344)
Q Consensus 98 -----~~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~~--~vDivIvREnteG~Y~g~e~~~~---------------- 154 (344)
++++|+|++||++||||+|+|||+. ++++++.+ .+|++|+||||||+|+|.++...
T Consensus 86 ~~~~~~~~~s~~l~LR~~ldlyan~RPv~~-~~~~~~~~~~~~divIvRe~t~g~Y~g~d~~~~~e~~~~~~~~~~~g~~ 164 (413)
T 1lwd_A 86 EFKLKKMWKSPNGTIRNILGGTVFREPIIC-KNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSS 164 (413)
T ss_dssp HHTCSSCCCCHHHHHHHHHCSEEEEEECCC-TTSCCSSTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEETTCCC
T ss_pred cccccccccCccHHHHHhcCCEEEEeeeec-cCCCCCCCCCCCceEEEecccCCccCCceeEeccCCcceeeEeccCCcc
Confidence 3678999999999999999999974 66655543 59999999999999998654420
Q ss_pred ----------CCEEEEEEEeeHHHHHHHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHH-hhCCC------
Q 019198 155 ----------PGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVA-TKYPS------ 217 (344)
Q Consensus 155 ----------~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva-~eyp~------ 217 (344)
.+.+....+||++++|||+|+||+||++| ++|||+|||+||||.|||||+++|+||+ ++||+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r-~~kVt~v~KaNVlk~sdglf~~~~~eva~~eypd~~~~~~ 243 (413)
T 1lwd_A 165 AKQWEVYNFPAGGVGMGMYNTDESISGFAHSCFQYAIQK-KWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKYK 243 (413)
T ss_dssp CEEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHH-TCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHHHTT
T ss_pred cccccccccCCCcEEEEEEEcHHHHHHHHHHHHHHHHHh-CCceEEEECCcchhhHHHHHHHHHHHHHHHhCCCcccCCe
Confidence 23566677999999999999999999999 7899999999999999999999999999 79999
Q ss_pred ceeeeeeHhHHHHHHHhCCCCccEEecCCcchhhhhhhhhhhcCCCccccCcccCC--------------CcCc-----c
Q 019198 218 IKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGNVG--------------NEKV-----V 278 (344)
Q Consensus 218 I~~~~~~vD~~~~~Lv~~P~~fdVIvt~NlfGDIlSDlaa~l~GglGl~pSa~nig--------------APdi-----a 278 (344)
|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+ |+| |||| |
T Consensus 244 I~~~~~~VD~~~mqlv~~P~~F-Vivt~NlfGDILSD~aA~l~GslGl~pSa-nig~~~~~~~fEpvHGSAPdi~~~~~a 321 (413)
T 1lwd_A 244 IWYEHRLIDDMVAQVLKSSGGF-VWACKNYDGDVQSDILAQGFGSLGLMTSV-LVCPDGKTIEAEAAHGTVTRHYREHQK 321 (413)
T ss_dssp CCEEEEEHHHHHHHHHHSCCCE-EEEECHHHHHHHHHHHHHHHTCTTSEEEE-EECTTSSCEEEECCSCCCHHHHHHHHT
T ss_pred EEEEEEEHHHHHHHHhcCCCce-EEEecccccchHHHHHHhhcCCccccccc-eeCCCCCceEEeCCCCChhhhhhhhhc
Confidence 9999999999999999999999 99999999999999999999999999999 998 8998 9
Q ss_pred CcCC-CChhHHHHHHHHHhhhcCchH-------HHHHHHHHHHHHHHcCcccCCCCC----C---------CCcHHHHHH
Q 019198 279 EQKK-ANPVALLLSSAMMLRHLQFPS-------FADRLETAVKRVISEEKYRTKDLG----G---------GCTTQQIVD 337 (344)
Q Consensus 279 Gk~i-ANP~a~Ils~ammL~~lg~~~-------~a~~i~~Av~~~l~~g~~~T~Dlg----G---------~~sT~e~~~ 337 (344)
|||+ |||+|+|||++|||+|||+.+ +|++|++||.++|++| .+|+||| | .+||+||+|
T Consensus 322 Gk~~~ANP~A~IlS~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~l~~G-~~T~Dlg~~~~G~~~~~~~~~~~~T~e~~d 400 (413)
T 1lwd_A 322 GRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESG-AMTKDLAGCIHGLSNVKLNEHFLNTSDFLD 400 (413)
T ss_dssp TCCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTT-CCCHHHHHHHHCTTSCCBTTTBCCHHHHHH
T ss_pred CCCCccChHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHHcC-CcCcccccccCCcccccccCCCCCHHHHHH
Confidence 9996 999999999999999999875 8999999999999999 5899996 5 579999999
Q ss_pred HHHHhc
Q 019198 338 AVIANL 343 (344)
Q Consensus 338 aV~~~l 343 (344)
+|+++|
T Consensus 401 aV~~~l 406 (413)
T 1lwd_A 401 TIKSNL 406 (413)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999987
No 26
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima}
Probab=100.00 E-value=7.5e-96 Score=727.03 Aligned_cols=311 Identities=20% Similarity=0.232 Sum_probs=286.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEeeCC-----CCCCcHHHHHHHHhcCeEEEccccCCCC-----
Q 019198 28 SPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD-----MKRVPQQVLDSIRKNKVCLKGGLKTPVG----- 97 (344)
Q Consensus 28 ~~~~I~vi~GDGIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~-----g~~lp~~~~~~~~~~da~l~G~~~~p~~----- 97 (344)
-+.+|++|||||||||||++++++|++++++++|+++++|.+ |+++|++++++||++|++||||+++|..
T Consensus 6 ~~~~I~~l~GDgiG~ei~~~v~~~l~~~~~~~~~~~~~~G~~~~~~~g~~lp~etl~~ik~~da~lkGav~tP~~~~~~~ 85 (399)
T 1zor_A 6 VKNPIVELDGDEMARVMWKMIKEKLILPYLDIQLVYFDLGIKKRDETDDQITIEAAKAIKKYGVGVKCATITPDAERVKE 85 (399)
T ss_dssp CCSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECCHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHHHHHH
T ss_pred ccccEEEecCCcccHHHHHHHHHHHHhCCCCeEEEEEeCCHHHHhccCCcCcHHHHHHHHHCCEEEEcCccCCCcccCcc
Confidence 357899999999999999999999999999999999999976 9999999999999999999999999962
Q ss_pred ----CCCCchhHHHHhhcCcEEEEEEeecCCCCCCCcc--cccEEEEecCCceeeeccccee----------e-------
Q 019198 98 ----GGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQ--NVDIVVIRENTEGEYSGLEHEV----------V------- 154 (344)
Q Consensus 98 ----~~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~~--~vDivIvREnteG~Y~g~e~~~----------~------- 154 (344)
++++|+|++|||+||||+|+||++ +|+++++.+ .+|++|+||||||.|.|.++.. .
T Consensus 86 ~~~~~~~~s~~l~LR~~ldlyan~RPv~-~~~~~~~~~~~~~divi~Re~t~g~Y~g~d~~~~~e~t~~~~y~~e~~~~~ 164 (399)
T 1zor_A 86 YNLKKAWKSPNATIRAYLDGTVFRKPIM-VKNVPPLVKRWKKPIIIGRHAYGDIYNAVEAKVEGPAEVELVVRNKENKTL 164 (399)
T ss_dssp HTCSSCCCCHHHHHHHHHTCEEEEEECC-BTTBCCSBTTCCSCCEEEECCSSGGGGCEEEEECSSEEEEEEEESSSCEEE
T ss_pred ccccccccCchHHHHHHhCCEEEEEEee-cCCCCCcccCcCccceeeecccCCCcCCceeEecCCCcceeeEeccccccc
Confidence 367899999999999999999998 888877654 4999999999999999876421 0
Q ss_pred ------CCEEEEEEEeeHHHHHHHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHh----hCCC--ceeee
Q 019198 155 ------PGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVAT----KYPS--IKYNE 222 (344)
Q Consensus 155 ------~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~----eyp~--I~~~~ 222 (344)
.+.+....++|++++|||+|+||+||++| ++|||+|||+||||+|||||+++|+||++ +||+ |+++|
T Consensus 165 ~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r-~~kVt~v~KaNvlk~sdglf~~~~~eva~~~~~~yp~~~I~~~~ 243 (399)
T 1zor_A 165 LVHKFEGNGVVMAMHNLEKSIRSFAQSCINYAISE-KVDIWFATKDTISKVYHAYFKDIFQEEVDKRKEELEKAGVNYRY 243 (399)
T ss_dssp EEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHH-TCCEEEEECTTTCTTHHHHHHHHHHHHHHHTHHHHHHTTCCEEE
T ss_pred eeeccCCceEEEEEEecHHHHHHHHHHHHHHHHHh-CCeEEEEECcccHHHHHHHHHHHHHHHHHhhcccCCCCcEEEEE
Confidence 13455666899999999999999999999 67899999999999999999999999987 9995 99999
Q ss_pred eeHhHHHHHHHhCCCCccEEecCCcchhhhhhhhhhhcCCCccccCcccCC-------------CcC-----ccCcCC-C
Q 019198 223 IIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGNVG-------------NEK-----VVEQKK-A 283 (344)
Q Consensus 223 ~~vD~~~~~Lv~~P~~fdVIvt~NlfGDIlSDlaa~l~GglGl~pSa~nig-------------APd-----iaGk~i-A 283 (344)
+|||+||||||++|++| ||||+|||||||||++|+++||+||+||+ |+| ||| |||||+ |
T Consensus 244 ~~vD~~~mqlv~~P~~f-Vivt~NlfGDIlSD~aA~l~GslGl~pSa-nig~~~~~~fEpvHGSAPdi~~~~iaGk~~~A 321 (399)
T 1zor_A 244 MLIDDAAAQILRSEGGM-LWACMNYEGDIMSDMIASGFGSLGLMTSV-LVSPDGVYEFEAAHGTVRRHYYRYLKGEKTST 321 (399)
T ss_dssp EEHHHHHHHHHHSCCCS-EEEECHHHHHHHHHHHHHHHCCGGGEEEE-EECTTCCEEEEESSCCCHHHHHHHTTTCCCCC
T ss_pred EEHHHHHHHhccCCCce-EEEEccchHHHHHHHHHHhcCCcccccee-EecCCCCeEEeCCCCcccccchhhhcCCCCcc
Confidence 99999999999999999 99999999999999999999999999999 998 899 799995 9
Q ss_pred ChhHHHHHHHHHhhhcCch-------HHHHHHHHHHHHHHHcCcccCCCCCC--------CCcHHHHHHHHHHhc
Q 019198 284 NPVALLLSSAMMLRHLQFP-------SFADRLETAVKRVISEEKYRTKDLGG--------GCTTQQIVDAVIANL 343 (344)
Q Consensus 284 NP~a~Ils~ammL~~lg~~-------~~a~~i~~Av~~~l~~g~~~T~DlgG--------~~sT~e~~~aV~~~l 343 (344)
||+|+|||++|||+|||+. ++|++|++||.++|++| .+|+|||| .+||+||+|+|+++|
T Consensus 322 NP~A~IlS~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~l~~g-~~T~Dlgg~~~g~~~~~~~T~e~~daV~~~l 395 (399)
T 1zor_A 322 NPTASIFAWTGAIRKRGELDGTPEVCEFADKLEKAVINTIESG-VITKDLQPFTEPPIDKYVTLEEFIDEVKKNL 395 (399)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTT-CCCGGGGGGCSSCCCCCCCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcCcccccchHHHHHHHHHHHHHHHHHcC-CcCccccccCCCCCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999975 57999999999999999 48999975 489999999999987
No 27
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A
Probab=100.00 E-value=1.6e-95 Score=723.33 Aligned_cols=312 Identities=19% Similarity=0.188 Sum_probs=278.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEeeCC-----CCCCcHHHHHHHHhcCeEEEccccCCCC-----
Q 019198 28 SPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD-----MKRVPQQVLDSIRKNKVCLKGGLKTPVG----- 97 (344)
Q Consensus 28 ~~~~I~vi~GDGIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~-----g~~lp~~~~~~~~~~da~l~G~~~~p~~----- 97 (344)
-+++|++|||||||||+|+..+++++..+++++|+++|+|.+ |+++|++++++||++|++||||++||..
T Consensus 6 ~~~~i~~i~GDei~~e~~~~i~~v~~~~~~~i~~~~~d~G~~~~~~tg~~lp~etl~aik~~~v~lkGa~~tP~~~~~~~ 85 (402)
T 4aoy_A 6 MKVPLVEMDGDEMTRIIWRLIKENLLEPYIELNTEYYDLGLENRDKTEDQVTIDAARAIQKYGVGVKCATITPNAQRVEE 85 (402)
T ss_dssp CSSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECCHHHHHHHTTHHHHHHHHHHHHHSEEEECCCCCCCHHHHHH
T ss_pred ccCcEEEECCCchHHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECcccCCCcccccc
Confidence 358999999999999999999999999999999999999986 8999999999999999999999999973
Q ss_pred ----CCCCchhHHHHhhcCcEEEEEEeecCCCCCCCcc--cccEEEEecCCceeeecccceee-----------------
Q 019198 98 ----GGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQ--NVDIVVIRENTEGEYSGLEHEVV----------------- 154 (344)
Q Consensus 98 ----~~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~~--~vDivIvREnteG~Y~g~e~~~~----------------- 154 (344)
++++|+|++|||+||||+|+||| ++||++++++ ++||+||||||||+|+|.|++..
T Consensus 86 ~~l~~~~~s~n~~LR~~Ldlyan~rPv-~~~~i~~~~~~~~~DivIvREnteg~Y~g~e~~~~~~~~~~~~~~~~~g~~~ 164 (402)
T 4aoy_A 86 YNLKKMWKSPNGTIRAILDGTVFRAPI-VVNSIKPFVKGWKKPISIARHAYGDVYKNVEYYVPSAGKAELVFTSENGEVS 164 (402)
T ss_dssp TTCSSCCCCHHHHHHHHHTCEEEEEEC-CCTTSCCSBTTCCBCCEEEEC------CCEEEEECSCEEEEEEEEETTSCEE
T ss_pred ccccccccChHHHHHHHhCCeEEeeeE-eccCCCCcCCCCCCCEEEEEeccCCeecCceeeccCccceeeeeeccCCccc
Confidence 57899999999999999999999 8999998886 59999999999999999988652
Q ss_pred --------CCEEEEEEEeeHHHHHHHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHh-hCC------Cce
Q 019198 155 --------PGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVAT-KYP------SIK 219 (344)
Q Consensus 155 --------~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~-eyp------~I~ 219 (344)
...+....++|++++|||+|+||+||++| +++||+|||+||||.|||+|+++|+|+++ +|| +|+
T Consensus 165 ~~~~~~~~~~gv~~~~~~t~~~~eRiar~AF~~A~~~-~~~vt~v~KaNilk~tdglf~~~~~eva~~eyp~~~~~~~i~ 243 (402)
T 4aoy_A 165 RQTIHEFDGPGVIMGMHNTDKSIRSFARACFNYALDM-NQDLWFSTKDTISKTYDHRFKDIFQEIYENEYKEKFEAKNLQ 243 (402)
T ss_dssp EEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHH-TCCEEEEECTTTSHHHHHHHHHHHHHHHHHHTHHHHHHTTCC
T ss_pred ccccccccCCeeEEEEEecHHHHHHHHHHHHHHHHHc-CCcEEEEECCccchhhhhHHHHHHHHHHHHhCcccccCCCeE
Confidence 11245667889999999999999999999 58999999999999999999999999997 998 999
Q ss_pred eeeeeHhHHHHHHHhCCCCccEEecCCcchhhhhhhhhhhcCCCccccCcccCC-------------CcC-----ccCcC
Q 019198 220 YNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGNVG-------------NEK-----VVEQK 281 (344)
Q Consensus 220 ~~~~~vD~~~~~Lv~~P~~fdVIvt~NlfGDIlSDlaa~l~GglGl~pSa~nig-------------APd-----iaGk~ 281 (344)
++|++||+++||||++|++| ||||+|||||||||++|+++||+||+||+ |+| ||| |||||
T Consensus 244 ~~~~~vD~~~~~lv~~P~~f-Vivt~Nl~GDIlSD~~A~l~GslGl~psa-nig~~~~~~fEp~HGSApd~~~~~iaGk~ 321 (402)
T 4aoy_A 244 YFYTLIDDAVARIIRSEGGM-VWACKNYDGDVMSDMVASAFGSLAMMTSV-LVSPDGKYEFEAAHGTVTRHYYKHLKGEE 321 (402)
T ss_dssp EEEEEHHHHHHHHHTSCBCS-EEECCC-CHHHHHHHHHHHHSCTTSEEEE-EECTTCCEEEEC-----------------
T ss_pred EEEEEHHHHHHHHhhCCCCc-EEEECCcchHHHHHHHHHhcCchhhcccc-ccCCCCceEEeeccCCccccchhhccCCC
Confidence 99999999999999999999 99999999999999999999999999999 998 999 89999
Q ss_pred C-CChhHHHHHHHHHhhhcCc-------hHHHHHHHHHHHHHHHcCcccCCCCCCCC--------cHHHHHHHHHHhcC
Q 019198 282 K-ANPVALLLSSAMMLRHLQF-------PSFADRLETAVKRVISEEKYRTKDLGGGC--------TTQQIVDAVIANLD 344 (344)
Q Consensus 282 i-ANP~a~Ils~ammL~~lg~-------~~~a~~i~~Av~~~l~~g~~~T~DlgG~~--------sT~e~~~aV~~~l~ 344 (344)
+ |||+|+|||++|||+|+|+ .++|++|++||.+++++|+ +|+||||.+ ||+||+|+|+++|+
T Consensus 322 ~~aNP~A~Ils~a~mL~~~g~~~~~~~l~~~A~~ie~Av~~~l~~g~-~T~Dlgg~~~~~~~~~~~T~ef~~av~~~l~ 399 (402)
T 4aoy_A 322 TSTNSMATIFAWTGALKKRGELDGIKELVDFATKLEQASVQTIENGV-MTKDLASLSEVPEKKIVNTEDFLKEIRKTFE 399 (402)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTE-EEHHHHTTCCCSCCEEECHHHHHHHHHHHHT
T ss_pred cCcCcHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHcCC-CCcccccccccCCCCCcCHHHHHHHHHHHHh
Confidence 7 9999999999999999986 5899999999999999995 899999866 99999999999874
No 28
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A*
Probab=100.00 E-value=2.7e-94 Score=720.52 Aligned_cols=314 Identities=21% Similarity=0.220 Sum_probs=283.8
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEeeCC-----CCCCcHHHHHHHHhcCeEEEccccCCCCC-
Q 019198 25 GDGSPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD-----MKRVPQQVLDSIRKNKVCLKGGLKTPVGG- 98 (344)
Q Consensus 25 ~~~~~~~I~vi~GDGIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~-----g~~lp~~~~~~~~~~da~l~G~~~~p~~~- 98 (344)
|.+-+++|++||||||||||++++.+.+...+++++|+++++|++ |+++|++++++|+++|++||||+++|..+
T Consensus 18 k~~~~~~I~~l~GDgig~evl~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~et~~ai~~~da~lkGav~tP~~~~ 97 (427)
T 2qfy_A 18 KIKVKQPVVELDGDEMTRIIWDKIKKKLILPYLDVDLKYYDLSVESRDATSDKITQDAAEAIKKYGVGIKCATITPDEAR 97 (427)
T ss_dssp CEECSSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHHH
T ss_pred cccceeeEEEecCCCHHHHHHHHHHHHhccCCCceEEEEEecChHHHhccCCcCcHHHHHHHHHCCEEEECCcCCCCCcc
Confidence 444568999999999999999999887776789999999999986 99999999999999999999999999622
Q ss_pred --------CCCchhHHHHhhcCcEEEEEEeec--CC----CCCCCc-----------ccccEEEEecCCceeee------
Q 019198 99 --------GVSSLNVQLRKELDLYAALVNCFN--LP----GLPTRH-----------QNVDIVVIRENTEGEYS------ 147 (344)
Q Consensus 99 --------~~~s~~~~LR~~ldlyanvRP~~~--~p----g~~~~~-----------~~vDivIvREnteG~Y~------ 147 (344)
+++|+|+.||++||||+|+||++. +| |+++|+ .++|++||||||||+|+
T Consensus 98 ~~e~~l~~~~~s~~~~lR~~ldlyan~RP~~~~~~~~l~~g~~~pl~i~R~~~g~~y~~~D~vivREnteg~Y~~~e~te 177 (427)
T 2qfy_A 98 VKEFNLHKMWKSPNGTIRNILGGTVFREPIVIPRIPRLVPRWEKPIIIGRHAHGDQYKATDTLIPGPGSLELVYKPSDPT 177 (427)
T ss_dssp HHHTTCSSCCCCHHHHHHHHHCSEEEEEECCCTTSCCSSTTCCEEEEEEEECSSGGGGCEEEEECSSEEEEEEEEESCTT
T ss_pred cchhhhcccccchHHHHHHhcCCEEEecccccccchhhccCCCCCeeEeecccCCccCCeeEEEeccCccceeeeccccC
Confidence 578999999999999999999875 64 445553 57999999999999999
Q ss_pred ccc---cee----eCCEEEEEEEeeHHHHHHHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHH-hhCCC--
Q 019198 148 GLE---HEV----VPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVA-TKYPS-- 217 (344)
Q Consensus 148 g~e---~~~----~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva-~eyp~-- 217 (344)
|.+ +.. .+++++. .++|++++|||+|+||++|++| ++|||+|||+||||.|||||+++|+||+ ++||+
T Consensus 178 G~~~~~~~~~~~~~~~v~~~-~~~T~~~ieRIar~AFe~A~~r-~~kVt~v~KaNVlk~s~glfr~v~~eva~~eYpd~~ 255 (427)
T 2qfy_A 178 TAQPQTLKVYDYKGSGVAMA-MYNTDESIEGFAHSSFKLAIDK-KLNLFLSTKNTILKKYDGRFKDIFQEVYEAQYKSKF 255 (427)
T ss_dssp TSCCEEEEEEEESSCEEEEE-EEEEHHHHHHHHHHHHHHHHHH-TCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHH
T ss_pred CccccccccccCCCceEEEE-EEEcHHHHHHHHHHHHHHHHHh-CCceEEEECCccchhhhHHHHHHHHHHHHHhCCCcc
Confidence 522 111 1344544 5899999999999999999999 6799999999999999999999999998 79999
Q ss_pred ----ceeeeeeHhHHHHHHHhCCCCccEEecCCcchhhhhhhhhhhcCCCccccCcccCC--------------Cc----
Q 019198 218 ----IKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGNVG--------------NE---- 275 (344)
Q Consensus 218 ----I~~~~~~vD~~~~~Lv~~P~~fdVIvt~NlfGDIlSDlaa~l~GglGl~pSa~nig--------------AP---- 275 (344)
|+++|+|||+||||||++|++| ||||+|||||||||++|+++||+||+||+ |+| ||
T Consensus 256 ~~~~I~~e~~~VD~~amqlV~~P~~F-Vivt~NlfGDILSD~aA~l~GslGl~pSa-nig~~~~~~~fEpvHGSAPdi~~ 333 (427)
T 2qfy_A 256 EQLGIHYEHRLIDDMVAQMIKSKGGF-IMALKNYDGDVQSDIVAQGFGSLGLMTSI-LVTPDGKTFESEAAHGTVTRHYR 333 (427)
T ss_dssp HHHTCCEEEEEHHHHHHHHHHSCEEE-EEEECHHHHHHHHHHHHHHHTCTTSEEEE-EECTTSCCEEEECCSCCCHHHHH
T ss_pred cCCeEEEEEEEHHHHHHHHHhCCCce-EEEECccchHHHHHHHHHhcCccccccee-EeCCCCceeEecCCCCCcccccc
Confidence 9999999999999999999999 99999999999999999999999999999 998 89
Q ss_pred -CccCcCC-CChhHHHHHHHHHhhhcCch-------HHHHHHHHHHHHHHH-cCcccCCCCCC---------CCcHHHHH
Q 019198 276 -KVVEQKK-ANPVALLLSSAMMLRHLQFP-------SFADRLETAVKRVIS-EEKYRTKDLGG---------GCTTQQIV 336 (344)
Q Consensus 276 -diaGk~i-ANP~a~Ils~ammL~~lg~~-------~~a~~i~~Av~~~l~-~g~~~T~DlgG---------~~sT~e~~ 336 (344)
||||||+ |||+|+|||++|||+|||+. ++|++|++||.++|+ +| .+|+|||| .+||+||+
T Consensus 334 ~diAGk~~~ANP~A~IlS~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~l~~~G-~~T~Dlgg~~g~~~~~~~~~T~e~~ 412 (427)
T 2qfy_A 334 KYQKGEETSTNSIASIFAWSRGLLKRGELDNTPALCKFANILESATLNTVQQDG-IMTKDLALACGNNERSAYVTTEEFL 412 (427)
T ss_dssp HHHTTCCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTC-CCCHHHHHHTTCCSGGGCCCHHHHH
T ss_pred hhhcCCCCccCcHHHHHHHHHHHHHhCcccCcchhHHHHHHHHHHHHHHHHhCC-CccccccccCCccccCCCCCHHHHH
Confidence 7899995 99999999999999999976 899999999999999 99 59999975 47999999
Q ss_pred HHHHHhc
Q 019198 337 DAVIANL 343 (344)
Q Consensus 337 ~aV~~~l 343 (344)
|+|+++|
T Consensus 413 daV~~~l 419 (427)
T 2qfy_A 413 DAVEKRL 419 (427)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999987
No 29
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE dehydrogenase, metal-binding, NAD, NADP, oxidoreductase, PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} SCOP: c.77.1.3 PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A
Probab=91.32 E-value=0.78 Score=44.25 Aligned_cols=127 Identities=11% Similarity=0.082 Sum_probs=75.1
Q ss_pred EeeHHHHHHHHHHHHHHHHh-cC--CCceEEEeccchhhhc--hHHH--------HHHHHHHHhhCCCcee-eeeeHhHH
Q 019198 163 VITKFCSERIAKYAFEYAYL-NY--RKKVTAVHKANIMKLA--DGLF--------LESCREVATKYPSIKY-NEIIVDNC 228 (344)
Q Consensus 163 ~~Tr~~~eRiar~AFe~A~~-r~--~~~Vt~v~KaNvlk~t--dglf--------~~~~~eva~eyp~I~~-~~~~vD~~ 228 (344)
.+|.+.+.+.++.+.+--++ -| +-|+-+.- .-+|+ .|+| +-..++..++ ++++ -.+-.|++
T Consensus 179 ~it~e~i~~~i~~~~~~l~~~fGi~~PrIAV~g---LNPHAGE~G~~G~EE~~iI~PAi~~lr~~--Gi~~~GP~paDt~ 253 (334)
T 3lxy_A 179 AITQASLHEVITILDNDLKTKFGITQPQIYVCG---LNPHAGEGGHMGHEEIDTIIPALNTLRQQ--GINLIGPLPADTL 253 (334)
T ss_dssp HCCHHHHHHHHHHHHHHHHHTSCCSSCCEEEEC---SSGGGGGGGTTCSHHHHTHHHHHHHHHHT--TCCEEEEECHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEe---cCCCCCCCCCCCchhHHHHHHHHHHHHHC--CCceeCCCChHHh
Confidence 46889999999888877665 23 34565552 00111 2333 3333444344 6655 45667887
Q ss_pred HHHHHhCCCCccEEecCCcc-hhhhhhh-----hhhhcCCCc-cccCcccCC-CcCccCcCCCChhHHHHHHHHHhh
Q 019198 229 CMQLVSKPEQFDVMVTPNLY-GNLVSNT-----AAGIAGGTG-VMPGAGNVG-NEKVVEQKKANPVALLLSSAMMLR 297 (344)
Q Consensus 229 ~~~Lv~~P~~fdVIvt~Nlf-GDIlSDl-----aa~l~GglG-l~pSa~nig-APdiaGk~iANP~a~Ils~ammL~ 297 (344)
..+-.+ ++||++|+.+.. |-|---+ +-.++.||= +-.|. .-| |-||||||+|||.+++.|.-+..+
T Consensus 254 F~~~~~--~~~D~vlaMYHDQGlip~K~l~F~~gVNvTlGLP~iRTS~-DHGTAfDIAGkG~A~~~S~~~Ai~~A~~ 327 (334)
T 3lxy_A 254 FQPKYL--QHADAVLAMYHDQGLPVLKYQGFGRAVNITLGLPFIRTSV-DHGTALELAATGTADVGSFITALNLAIK 327 (334)
T ss_dssp TSHHHH--TTCSEEEESSHHHHHHHHHHHHTTCCEEEEESSSSCEEEE-SSCCCGGGTTTTCSCCHHHHHHHHHHHH
T ss_pred cChhhh--ccCCEEEEcccchhhHhHHhcccCccEEEecCCCeeeecC-CCCcchhhccCCCCChHHHHHHHHHHHH
Confidence 766554 799999998763 2221111 112222221 22344 444 999999999999999888766544
No 30
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=86.45 E-value=18 Score=32.62 Aligned_cols=155 Identities=17% Similarity=0.207 Sum_probs=79.3
Q ss_pred CCCeeEEEEEeeCCCCCCcHHHHHHHHhcCeEEEccccCCCCCC--CCchhHH-HHhhcCcEEEEEEeecCCCCCCCccc
Q 019198 56 HAPIYFEKYEVHGDMKRVPQQVLDSIRKNKVCLKGGLKTPVGGG--VSSLNVQ-LRKELDLYAALVNCFNLPGLPTRHQN 132 (344)
Q Consensus 56 ~~~i~~~~~~~g~~g~~lp~~~~~~~~~~da~l~G~~~~p~~~~--~~s~~~~-LR~~ldlyanvRP~~~~pg~~~~~~~ 132 (344)
++++++... . |+ ..++.++..+++|.+++|.-+...... ..|.... +|+ -+
T Consensus 100 ~~~~~~~~~-~---g~-~~~~I~~~a~~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~---------------------~~ 153 (309)
T 3cis_A 100 PPTVHSEIV-P---AA-AVPTLVDMSKDAVLMVVGCLGSGRWPGRLLGSVSSGLLRH---------------------AH 153 (309)
T ss_dssp CSCEEEEEE-S---SC-HHHHHHHHGGGEEEEEEESSCTTCCTTCCSCHHHHHHHHH---------------------CS
T ss_pred CceEEEEEe-c---CC-HHHHHHHHhcCCCEEEECCCCCccccccccCcHHHHHHHh---------------------CC
Confidence 556655422 2 32 345666777899999999876432111 1121111 221 13
Q ss_pred ccEEEEecCCceeeecccceeeCCEEEEEEEeeHHHHHHHHHHHHHHHHhcCCCceEEEeccchhhh-------------
Q 019198 133 VDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKL------------- 199 (344)
Q Consensus 133 vDivIvREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~------------- 199 (344)
.+++||+...... .+.....+.+.+. -.+.+++.+++|+++|+.. ..+|+++|=..-...
T Consensus 154 ~PVlvv~~~~~~~----~~~~~~~Ilv~~D--~s~~s~~al~~a~~la~~~-~a~l~ll~v~~~~~~~~~~~~~~~~~~~ 226 (309)
T 3cis_A 154 CPVVIIHDEDSVM----PHPQQAPVLVGVD--GSSASELATAIAFDEASRR-NVDLVALHAWSDVDVSEWPGIDWPATQS 226 (309)
T ss_dssp SCEEEECTTCCCS----CSSCCCCEEEECC--SSHHHHHHHHHHHHHHHHT-TCCEEEEEESCSSCCTTCSSCCHHHHHH
T ss_pred CCEEEEcCCcccC----CCCCCCeEEEEeC--CChHHHHHHHHHHHHHHhc-CCEEEEEEEeecccccCCCcccHHHHHH
Confidence 6677777654210 0000112222222 2356789999999999987 467888873221100
Q ss_pred -chHHHHHHHHHHHhhCCCceeeeeeH----hHHHHHHHhCCCCccEEecCC
Q 019198 200 -ADGLFLESCREVATKYPSIKYNEIIV----DNCCMQLVSKPEQFDVMVTPN 246 (344)
Q Consensus 200 -tdglf~~~~~eva~eyp~I~~~~~~v----D~~~~~Lv~~P~~fdVIvt~N 246 (344)
....+.+...++.+.||+++++.... .....+..+ +.|.||+..
T Consensus 227 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~---~adliV~G~ 275 (309)
T 3cis_A 227 MAEQVLAERLAGWQERYPNVAITRVVVRDQPARQLVQRSE---EAQLVVVGS 275 (309)
T ss_dssp HHHHHHHHHHTTHHHHCTTSCEEEEEESSCHHHHHHHHHT---TCSEEEEES
T ss_pred HHHHHHHHHHHHHHhhCCCCcEEEEEEcCCHHHHHHHhhC---CCCEEEECC
Confidence 01112223333334578887776543 223333343 788777654
No 31
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural GENO PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium}
Probab=82.06 E-value=1.3 Score=42.65 Aligned_cols=120 Identities=18% Similarity=0.214 Sum_probs=74.3
Q ss_pred EeeHHHHHHHHHHHHHHHHh-cC--CCceEEEeccchhhhc--hHHH-HH-------HHHHHHhhCCCcee-eeeeHhHH
Q 019198 163 VITKFCSERIAKYAFEYAYL-NY--RKKVTAVHKANIMKLA--DGLF-LE-------SCREVATKYPSIKY-NEIIVDNC 228 (344)
Q Consensus 163 ~~Tr~~~eRiar~AFe~A~~-r~--~~~Vt~v~KaNvlk~t--dglf-~~-------~~~eva~eyp~I~~-~~~~vD~~ 228 (344)
.+|++.+.+.++...+ -++ -| +-|+-+.- -| +|. .|+| +| ..++..++ ++.+ --.-.|++
T Consensus 181 ~it~e~i~~~i~~~~~-L~~~fgi~~PrIaV~G-LN--PHAGE~G~~G~EE~~iI~PAi~~~r~~--Gi~~~GP~paDT~ 254 (330)
T 2hi1_A 181 TLSTARVETVIGIADT-FLKRVGYVKPRIAVAG-VN--PHAGENGLFGDEETRILTPAITDARAK--GMDVYGPCPPDTV 254 (330)
T ss_dssp HCCHHHHHHHHHHHHH-HHHHTTCSSCEEEEEC-SS--GGGSSTTSCCHHHHHTHHHHHHHHHTT--TCEEEEEECHHHH
T ss_pred hcCHHHHHHHHHHHHH-HHHHcCCCCCCEEEEe-cC--CCCCCCCCCCHhHHHHHHHHHHHHHHC--CCceeCCCCchhh
Confidence 4799999999999988 444 23 23443321 12 222 2444 22 22222233 6666 45667888
Q ss_pred HHHHHhCCCCccEEecCCcchhhhhhhhhhhcCCCccccCcccC-------------C-CcCccCcCCCChhHHHHHHHH
Q 019198 229 CMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGNV-------------G-NEKVVEQKKANPVALLLSSAM 294 (344)
Q Consensus 229 ~~~Lv~~P~~fdVIvt~NlfGDIlSDlaa~l~GglGl~pSa~ni-------------g-APdiaGk~iANP~a~Ils~am 294 (344)
-.+-.+ ++||++|+- |= |.+---.--+|+--+. |+ | |-||||||+|||.+++.|.-+
T Consensus 255 F~~~~~--~~~D~vlaM--YH----DQGlip~K~l~F~~gV-NvTlGLP~iRTSvDHGTAfDIAGkG~A~~~Sl~~Ai~~ 325 (330)
T 2hi1_A 255 FLQAYE--GQYDMVVAM--YH----DQGHIPLKLLGFYDGV-NITAGLPFIRTSADHGTAFDIAWTGKAKSESMAVSIKL 325 (330)
T ss_dssp HHHHHT--TSCSEEEES--SH----HHHHHHHHHCC-CCSE-EEEETSSSEEEEESCCCCTTTTTTTCCCCHHHHHHHHH
T ss_pred cccccc--ccCCEEEEc--cc----ccccHhHhhcccCcce-EEecCCCEEEecCCCCccccccCCCCCChHHHHHHHHH
Confidence 766544 699999973 43 5555444555555555 55 2 999999999999999988766
Q ss_pred Hhh
Q 019198 295 MLR 297 (344)
Q Consensus 295 mL~ 297 (344)
..+
T Consensus 326 A~~ 328 (330)
T 2hi1_A 326 AMQ 328 (330)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 32
>1vi1_A Fatty acid/phospholipid synthesis protein PLSX; structural genomics, unknown function; HET: MSE; 2.95A {Bacillus subtilis} SCOP: c.77.1.4
Probab=79.53 E-value=11 Score=35.91 Aligned_cols=137 Identities=14% Similarity=0.124 Sum_probs=80.0
Q ss_pred eeHHHHHHHHHHHHHHHHh-cCC--CceEEEeccch----hhhchHHHHHHHHHHHhhCCCceee-eeeHhHHHHHHHhC
Q 019198 164 ITKFCSERIAKYAFEYAYL-NYR--KKVTAVHKANI----MKLADGLFLESCREVATKYPSIKYN-EIIVDNCCMQLVSK 235 (344)
Q Consensus 164 ~Tr~~~eRiar~AFe~A~~-r~~--~~Vt~v~KaNv----lk~tdglf~~~~~eva~eyp~I~~~-~~~vD~~~~~Lv~~ 235 (344)
.|.+...++++.+-++|++ -|. -||-+. |+ .+ +...-++.++.+.+. |+++++ .+--|+...
T Consensus 148 ~~~e~L~~~a~~~~~~a~~~~Gi~~PrValL---N~Ge~~~~-g~e~i~~A~~ll~~~-~~i~~~G~ve~d~~~~----- 217 (345)
T 1vi1_A 148 AKPEHLVQYAIMGSVYSQQVRGVTSPRVGLL---NVGTEDKK-GNELTKQTFQILKET-ANINFIGNVEARDLLD----- 217 (345)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSCCSSCEEEEE---ESSSSTTC-SCHHHHHHHHHHHSC-TTSEEEEEEEGGGGGG-----
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCCeEEEE---eCCCCCCC-CCHHHHHHHHHHhcC-CCCeEEeccCCCcccc-----
Confidence 4788889999999999998 553 467776 33 12 223445555444444 788774 345554433
Q ss_pred CCCccEEecCCcchhhhhhhh----------------hhhcCCCcc------------ccCcccCC--------CcCccC
Q 019198 236 PEQFDVMVTPNLYGNLVSNTA----------------AGIAGGTGV------------MPGAGNVG--------NEKVVE 279 (344)
Q Consensus 236 P~~fdVIvt~NlfGDIlSDla----------------a~l~GglGl------------~pSa~nig--------APdiaG 279 (344)
+++||+||.-.=|+|.-=.. +++.+.+|+ -++...+| .|+|++
T Consensus 218 -G~aDVvV~d~~~GNI~lK~~eg~~~~~~~~~k~~f~~~~~~~lg~~l~~P~l~~~~~~~d~~~~gga~llG~~~pvi~~ 296 (345)
T 1vi1_A 218 -DVADVVVTDGFTGNVTLKTLEGSALSIFKMMRDVMTSTLTSKLAAAVLKPKLKEMKMKMEYSNYGGASLFGLKAPVIKA 296 (345)
T ss_dssp -TSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-------CCHHHHHHHHHHHCGGGSCCEEEETBSSCEEEC
T ss_pred -CCCCEEEeCchhhhHHHHHHHhhhhhhHHHHHHHhhcchhhhhhhhhccchHHHHHhcCCccccccceeecCCccEEEe
Confidence 78999998444466654444 223344443 11110132 789999
Q ss_pred cCCCChhHHHHHHHHHhhhcCchHHHHHHHHHH
Q 019198 280 QKKANPVALLLSSAMMLRHLQFPSFADRLETAV 312 (344)
Q Consensus 280 k~iANP~a~Ils~ammL~~lg~~~~a~~i~~Av 312 (344)
++.+|+-+.+.|.++...... ...-+.|++.+
T Consensus 297 ~g~a~~~~i~~ai~~A~~~a~-~~~~~~i~~~~ 328 (345)
T 1vi1_A 297 HGSSDSNAVFRAIRQAREMVS-QNVAALIQEEV 328 (345)
T ss_dssp CTTCCHHHHHHHHHHHHHHHH-TTHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHH-cCHHHHHHHHH
Confidence 999999999988876654321 22344455444
No 33
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural GE PSI; 2.01A {Pseudomonas aeruginosa}
Probab=78.53 E-value=0.97 Score=43.49 Aligned_cols=121 Identities=13% Similarity=0.140 Sum_probs=72.8
Q ss_pred EeeHHHHHHHHHHHHHHHHhc-C--CCceEEEeccchhhhc--hHHH-HH-------HHHHHHhhCCCcee-eeeeHhHH
Q 019198 163 VITKFCSERIAKYAFEYAYLN-Y--RKKVTAVHKANIMKLA--DGLF-LE-------SCREVATKYPSIKY-NEIIVDNC 228 (344)
Q Consensus 163 ~~Tr~~~eRiar~AFe~A~~r-~--~~~Vt~v~KaNvlk~t--dglf-~~-------~~~eva~eyp~I~~-~~~~vD~~ 228 (344)
.+|++.+.+.++...+--+++ | +-|+-+.- -| +|. .|+| +| ..++..++ ++.+ --.-.|++
T Consensus 174 ~it~e~i~~~i~~~~~~L~~~fgi~~PrIaV~G-LN--PHAGE~G~~G~EE~~iI~Pai~~~r~~--Gi~~~GP~paDT~ 248 (328)
T 1yxo_A 174 AISDERLTRVARILHADLRDKFGIAHPRILVCG-LN--PHAGEGGHLGREEIEVIEPCLERLRGE--GLDLIGPLPADTL 248 (328)
T ss_dssp HCCHHHHHHHHHHHHHHHHHTTCCSSCEEEEEC-SS--GGGGTTTTTCSHHHHTHHHHHHHHHTT--TCEEEEEECHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEe-cC--CCCCCCCCCCHhHHHHHHHHHHHHHHC--CCceeCCCCchhh
Confidence 478999999888888755552 3 23443321 12 222 3444 11 22333333 6666 45567887
Q ss_pred HHHHHhCCCCccEEecCCcchhhhhhhhhhhcCCCccccCcccC-------------C-CcCccCcCCCChhHHHHHHHH
Q 019198 229 CMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAGNV-------------G-NEKVVEQKKANPVALLLSSAM 294 (344)
Q Consensus 229 ~~~Lv~~P~~fdVIvt~NlfGDIlSDlaa~l~GglGl~pSa~ni-------------g-APdiaGk~iANP~a~Ils~am 294 (344)
-.+-.+ ++||++|+ ||= |.+---.--+|+--+. |+ | |-||||||+|||.+++.|.-+
T Consensus 249 F~~~~~--~~~D~vla--MYH----DQGlip~K~l~F~~gV-NvTlGLP~iRTSvDHGTAfDIAGkG~A~~~Sl~~Ai~~ 319 (328)
T 1yxo_A 249 FTPKHL--EHCDAVLA--MYH----DQGLPVLKYKGFGAAV-NVTLGLPIIRTSVDHGTALDLAGSGRIDSGSLQVALET 319 (328)
T ss_dssp TSHHHH--TTCSEEEE--SSH----HHHHHHHHHHHTTSCE-EEEESSSSCEEEECSCCCGGGTTTCCCCCHHHHHHHHH
T ss_pred cccccc--cCCCEEEE--ccc----ccccHhHhhcccCcce-EEecCCCEEEecCCCCccccccCCCCCChHHHHHHHHH
Confidence 766544 69999997 343 4544333344444444 44 3 999999999999999988766
Q ss_pred Hhh
Q 019198 295 MLR 297 (344)
Q Consensus 295 mL~ 297 (344)
..+
T Consensus 320 A~~ 322 (328)
T 1yxo_A 320 AYQ 322 (328)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 34
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET: ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB: 1j1w_A*
Probab=75.36 E-value=56 Score=33.84 Aligned_cols=174 Identities=19% Similarity=0.218 Sum_probs=114.2
Q ss_pred cceeeCCEEEEEEEeeHHHHHHHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHhhCC--Cceeeee-eHh
Q 019198 150 EHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYP--SIKYNEI-IVD 226 (344)
Q Consensus 150 e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp--~I~~~~~-~vD 226 (344)
+|.+..|-.+..+..-..-++-.++.|...||..|-.-|.-.|+.-. | |.-..+-+++.-++|- ++++.-| -++
T Consensus 447 eh~Ve~GDIwRmcq~KDapI~DWVkLAV~Rar~sg~pavFWLD~~Ra--H-Da~lI~kV~~yL~~hdt~GLdi~Im~p~~ 523 (741)
T 1itw_A 447 EQSVEAGDIWRMCQAKDAPIQDWVKLAVNRARATNTPAVFWLDPARA--H-DAQVIAKVERYLKDYDTSGLDIRILSPVE 523 (741)
T ss_dssp EEEECTTCEEEEEEECHHHHHHHHHHHHHHHHHHTCCEEEECCTTSH--H-HHHHHHHHHHHHTTSCCTTCCEEEECHHH
T ss_pred EccccCCcchhhhhccCchHHHHHHHHHHHHHhcCCCeEEeeCCCCc--c-HHHHHHHHHHHHHhcCCCCCceEeeCHHH
Confidence 45554554556666667789999999999999987666776665432 2 3333333344445542 5666666 456
Q ss_pred HHHHHHHhCCCCcc-EEecCCcchhhhhhhhhhh--------------cCCCccccCcccCC-CcCccCc------CCCC
Q 019198 227 NCCMQLVSKPEQFD-VMVTPNLYGNLVSNTAAGI--------------AGGTGVMPGAGNVG-NEKVVEQ------KKAN 284 (344)
Q Consensus 227 ~~~~~Lv~~P~~fd-VIvt~NlfGDIlSDlaa~l--------------~GglGl~pSa~nig-APdiaGk------~iAN 284 (344)
++-..|-+=-.+-| +-||.|..=|+|+||.--| +-|=||.-.+ -=| ||...-| =.=+
T Consensus 524 A~~~sleRir~G~dTISVTGNVLRDYLTDLFPIlELGTSAKMLSIVPLm~GGGLfETG-AGGSAPKHVqQ~~eEnhLRWD 602 (741)
T 1itw_A 524 ATRFSLARIREGKDTISVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMSGGGLFETG-AGGSAPKHVQQFLEEGYLRWD 602 (741)
T ss_dssp HHHHHHHHHHTTCCCEEEECHHHHHHHHHHHHHHHHSCSSSSEEEEEBTTSCEEEESC-SSCCCHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHHHcCCCeEEeechhhhhhccccchhhhhccchhHhhhcccccCCccccCC-CCcCchHHHHHHHHcCccchh
Confidence 66666644334445 7799999999999998732 1222332222 112 7874322 2557
Q ss_pred hhHHHHHHHHHhhhcCch-------HHHHHHHHHHHHHHHcCcccCCCCC
Q 019198 285 PVALLLSSAMMLRHLQFP-------SFADRLETAVKRVISEEKYRTKDLG 327 (344)
Q Consensus 285 P~a~Ils~ammL~~lg~~-------~~a~~i~~Av~~~l~~g~~~T~Dlg 327 (344)
.+|-+|+.+--|+||+.. --|+.+.+|+.+.|++++.-.+-.|
T Consensus 603 SLGEFlALa~Sle~l~~~~~N~kA~vLa~tLD~At~~~L~n~KSPsRkvG 652 (741)
T 1itw_A 603 SLGEFLALAASLEHLGNAYKNPKALVLASTLDQATGKILDNNKSPARKVG 652 (741)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTCSCCSSSS
T ss_pred hHHHHHHHHHhHHHHHhhcCChHHHHHHHHHHHHHHHHHhCCCCCCcccC
Confidence 899999999999999863 2388999999999998864344444
No 35
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} PDB: 3mbc_A*
Probab=75.29 E-value=56 Score=33.80 Aligned_cols=174 Identities=18% Similarity=0.172 Sum_probs=114.3
Q ss_pred cceeeCCEEEEEEEeeHHHHHHHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHhhCC--Cceeeee-eHh
Q 019198 150 EHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYP--SIKYNEI-IVD 226 (344)
Q Consensus 150 e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp--~I~~~~~-~vD 226 (344)
+|.+..|-.+..+..-..-++-.++.|...||..|-.-|.-.|+.-. | |.-..+-+++.-++|- ++++.-| -++
T Consensus 443 eh~Ve~GDIwRmcq~KDapI~DWVkLAV~Rar~sg~pavFWLD~~Ra--H-Da~lI~kV~~yL~~hdt~GLdi~Im~p~~ 519 (738)
T 2b0t_A 443 EHDVEANDIWRACQVKDAPIQDWVKLAVTRSRLSGMPAVFWLDPERA--H-DRNLASLVEKYLADHDTEGLDIQILSPVE 519 (738)
T ss_dssp EEEECTTCEEEEEEECHHHHHHHHHHHHHHHHHHCCCEEEECCTTCH--H-HHHHHHHHHHHHTTSCCTTCCEEEECHHH
T ss_pred eccccCCcchhhhhccCchHHHHHHHHHHHHHhcCCCeEEeeCCCCc--c-HHHHHHHHHHHHHhcCCCCCceEeeCHHH
Confidence 45554554556666667789999999999999987666776665432 2 3333333344444542 5666666 456
Q ss_pred HHHHHHHhCCCCcc-EEecCCcchhhhhhhhhhh--------------cCCCccccCcccCC-CcCccCc------CCCC
Q 019198 227 NCCMQLVSKPEQFD-VMVTPNLYGNLVSNTAAGI--------------AGGTGVMPGAGNVG-NEKVVEQ------KKAN 284 (344)
Q Consensus 227 ~~~~~Lv~~P~~fd-VIvt~NlfGDIlSDlaa~l--------------~GglGl~pSa~nig-APdiaGk------~iAN 284 (344)
++-..|-+=-.+-| +-||.|..=|+|+||.--| +-|=||.-.+ -=| ||...-| =.=+
T Consensus 520 A~~~slerir~G~dTISVTGNVLRDYLTDLFPIlELGTSAKMLSIVPLm~GGGLfETG-AGGSAPKHVqQ~~eEnhLRWD 598 (738)
T 2b0t_A 520 ATQLSIDRIRRGEDTISVTGNVLRDYNTDLFPILELGTSAKMLSVVPLMAGGGLFETG-AGGSAPKHVQQVQEENHLRWD 598 (738)
T ss_dssp HHHHHHHHHHTTCCCEEEECHHHHHHHHHHHHHHHHSCSSSCEEEEEBTTSCEEEECC-SSCCCHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHHHcCCCeEEeechhhhhhccccchhhhhccchhHhhhcccccCCccccCC-CCcCchHHHHHHHHcCccchh
Confidence 66666644334445 7799999999999998732 1222332222 112 7874322 2557
Q ss_pred hhHHHHHHHHHhhhcCch-------HHHHHHHHHHHHHHHcCcccCCCCC
Q 019198 285 PVALLLSSAMMLRHLQFP-------SFADRLETAVKRVISEEKYRTKDLG 327 (344)
Q Consensus 285 P~a~Ils~ammL~~lg~~-------~~a~~i~~Av~~~l~~g~~~T~Dlg 327 (344)
.+|-+|+.+--|+||+.. --|+.+.+|+.+.|++++.-.+-.|
T Consensus 599 SLGEFlALa~Sle~l~~~~~N~kA~vLa~tLD~At~~~L~n~KSPsRkvG 648 (738)
T 2b0t_A 599 SLGEFLALAESFRHELNNNGNTKAGVLADALDKATEKLLNEEKSPSRKVG 648 (738)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTCSCCSSTT
T ss_pred hHHHHHHHHHhHHHHHhhcCChHHHHHHHHHHHHHHHHHhCCCCCCcccC
Confidence 899999999999999863 2388999999999998864344444
No 36
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=73.46 E-value=8.4 Score=33.95 Aligned_cols=74 Identities=8% Similarity=0.023 Sum_probs=43.1
Q ss_pred HHHHHHHHHHh--cCCCceEEEeccchhhhchHHHHHHHHHHHhhCCCce-eeeeeH-------h---HHHHHHHhCCC-
Q 019198 172 IAKYAFEYAYL--NYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIK-YNEIIV-------D---NCCMQLVSKPE- 237 (344)
Q Consensus 172 iar~AFe~A~~--r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~-~~~~~v-------D---~~~~~Lv~~P~- 237 (344)
..+.+.++..+ +|.+++.++.-..-.. +.....+-+.+..+++|+++ ++..++ + .++.++++...
T Consensus 110 ~g~~~~~~l~~~~~g~~~i~~i~~~~~~~-~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 188 (291)
T 3l49_A 110 IGAELALQMVADLGGKGNVLVFNGFYSVP-VCKIRYDQMKYVLEAFPDVKIIEPELRDVIPNTIQSAYSNVTDMLTKYPN 188 (291)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECSCTTSH-HHHHHHHHHHHHHHTCTTEEECSSCBCCCSSSHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHcCCCceEEEEeCCCCCc-hHHHHHHHHHHHHHHCCCCEEEeeeccCCCCCCHHHHHHHHHHHHHhCCC
Confidence 34455555555 6778888885332111 22334556666667788877 343322 1 34455555444
Q ss_pred --CccEEecCC
Q 019198 238 --QFDVMVTPN 246 (344)
Q Consensus 238 --~fdVIvt~N 246 (344)
++|.|+|.|
T Consensus 189 ~~~~~ai~~~~ 199 (291)
T 3l49_A 189 EGDVGAIWACW 199 (291)
T ss_dssp TTSCCEEEESS
T ss_pred cCCcCEEEECC
Confidence 899999987
No 37
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=68.01 E-value=14 Score=32.11 Aligned_cols=74 Identities=12% Similarity=0.082 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhc----CCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeeeH--------hHHHHHHHhCCCCc
Q 019198 172 IAKYAFEYAYLN----YRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIV--------DNCCMQLVSKPEQF 239 (344)
Q Consensus 172 iar~AFe~A~~r----~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~v--------D~~~~~Lv~~P~~f 239 (344)
..+.+.++..++ |.+++-++.-..-.. +.....+-+.+..+++|++++..... -..+.++++...++
T Consensus 110 ~g~~~~~~l~~~~~~~G~~~i~~i~~~~~~~-~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 188 (276)
T 3ksm_A 110 AGQLAARALLATLDLSKERNIALLRLRAGNA-STDQREQGFLDVLRKHDKIRIIAAPYAGDDRGAARSEMLRLLKETPTI 188 (276)
T ss_dssp HHHHHHHHHHHHSCTTSCEEEEECBCCTTCH-HHHHHHHHHHHHHTTCTTEEEEECCBCCSSHHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHHHHhcCcCCCceEEEEEcCCCch-hHHHHHHHHHHHHHhCCCcEEEEEecCCCcHHHHHHHHHHHHHhCCCc
Confidence 344555555555 788888886332111 23345566677677888888654321 13455666665679
Q ss_pred cEEecCC
Q 019198 240 DVMVTPN 246 (344)
Q Consensus 240 dVIvt~N 246 (344)
|.|+|.|
T Consensus 189 ~ai~~~~ 195 (276)
T 3ksm_A 189 DGLFTPN 195 (276)
T ss_dssp CEEECCS
T ss_pred eEEEECC
Confidence 9999987
No 38
>1u7n_A Fatty acid/phospholipid synthesis protein PLSX; structural genomics, enterococcus faecalis V583, PSI, protein structure initiative; HET: MSE; 2.26A {Enterococcus faecalis} SCOP: c.77.1.4
Probab=66.10 E-value=44 Score=31.63 Aligned_cols=123 Identities=17% Similarity=0.125 Sum_probs=71.1
Q ss_pred eHHHHHHHHHHHHHHHHh-cCC--CceEEEeccchhh---hchHHHHHHHHHHHhhCCCceeee-eeHhHHHHHHHhCCC
Q 019198 165 TKFCSERIAKYAFEYAYL-NYR--KKVTAVHKANIMK---LADGLFLESCREVATKYPSIKYNE-IIVDNCCMQLVSKPE 237 (344)
Q Consensus 165 Tr~~~eRiar~AFe~A~~-r~~--~~Vt~v~KaNvlk---~tdglf~~~~~eva~eyp~I~~~~-~~vD~~~~~Lv~~P~ 237 (344)
|.+...+++..+-++|++ -|. -||-+. |+-. .+...-++..+.+.+. |++.++- +--|+... +
T Consensus 151 ~~e~L~~~a~~~~~~a~~~~Gi~~PrValL---N~Ge~~~~g~e~v~~A~~ll~~~-~~i~~~G~ve~d~~~~------g 220 (336)
T 1u7n_A 151 KPEHLVQYAVLGSFYAEKVRNVQNPRVGLL---NNGTEETKGSELTKKAFELLAAD-ETINFVGNVEARELLN------G 220 (336)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCSSCCEEEE---CSCC----CCHHHHHHHHHHHHC-TTSCEEEEECGGGGGG------C
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCCeEEEE---eCcCCCCCCCHHHHHHHHHHhcC-CCCeEEeccCCCcccc------C
Confidence 566677777777799998 443 467776 4311 0122334444444434 7777643 44454432 7
Q ss_pred CccEEecCCcchhhhhhhh------------h-----hhcCCCcc---cc-----------Ccc----cCC--CcCccCc
Q 019198 238 QFDVMVTPNLYGNLVSNTA------------A-----GIAGGTGV---MP-----------GAG----NVG--NEKVVEQ 280 (344)
Q Consensus 238 ~fdVIvt~NlfGDIlSDla------------a-----~l~GglGl---~p-----------Sa~----nig--APdiaGk 280 (344)
++||+||.-.=|+|.-=.. . ++.+.+|+ .| ..+ -+| .|+|+++
T Consensus 221 ~~DvvV~d~~~GNi~lK~~eg~~~~~~~~~k~~f~~~~~~~~lg~~li~~~l~~l~~~~d~~~~gga~llG~~~pvi~~~ 300 (336)
T 1u7n_A 221 VADVVVTDGFTGNAVLKSIEGTAMNMMSLLKTAILSEGVKGKMGALLLKNALHGMKDEMDYSKHGGAVLFGLKAPVIKTH 300 (336)
T ss_dssp SCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHTCGGGGCCEEEETBSSCEEECC
T ss_pred CCCEEEeCcchhhHHHHHHHhhHHHHHHHHHHHhccCCchhhhhhhhhhhhHHHHHhccCccccccceeecCcCcEEEeC
Confidence 8999998555577765554 1 22222332 11 110 112 7899999
Q ss_pred CCCChhHHHHHHHHHhh
Q 019198 281 KKANPVALLLSSAMMLR 297 (344)
Q Consensus 281 ~iANP~a~Ils~ammL~ 297 (344)
+.+|+-+.+.|..+..+
T Consensus 301 g~a~~~~i~~ai~~A~~ 317 (336)
T 1u7n_A 301 GATGPDAVRYTIRQIHT 317 (336)
T ss_dssp TTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999988876554
No 39
>4aty_A Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; oxidoreductase; 1.85A {Burkholderia xenovorans LB400}
Probab=64.96 E-value=3.7 Score=39.51 Aligned_cols=123 Identities=19% Similarity=0.203 Sum_probs=66.0
Q ss_pred EeeHHHHHHHHHHHHHHHHhcCCC--ceEEE-eccchhhhchHHH-HH-------HHHHHHhhCCCceee-eeeHhHHHH
Q 019198 163 VITKFCSERIAKYAFEYAYLNYRK--KVTAV-HKANIMKLADGLF-LE-------SCREVATKYPSIKYN-EIIVDNCCM 230 (344)
Q Consensus 163 ~~Tr~~~eRiar~AFe~A~~r~~~--~Vt~v-~KaNvlk~tdglf-~~-------~~~eva~eyp~I~~~-~~~vD~~~~ 230 (344)
.+|++.+.+.++...+.-++-+.+ |+-+. =-.+.= -.|+| +| +.++..++ ++.+. -.-.|.+-
T Consensus 196 ~It~~~I~~~i~~~~~~l~~fgi~~PrIaV~GLNPHaG--E~G~~G~EE~~iI~Pai~~l~~~--gi~v~GP~paDt~F- 270 (349)
T 4aty_A 196 RLDQRHVERAARAAVQALQLMGIAHPVVGLMGINPHAG--EGGLFGRDDIDITEPVARKLRDD--GMTVIGPQGADLLL- 270 (349)
T ss_dssp HCCHHHHHHHHHHHHHHHHHTC-CCCCEEEECSSGGGG--TTTTTCSHHHHTHHHHHHHHHHC---CCEEEEECHHHHT-
T ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCC--ccccccchHHHHHHHHHHHHHHC--CCeEeCCCchhhhh-
Confidence 568888888877776665554422 33332 111111 13444 12 22333332 44443 45567665
Q ss_pred HHHhCCCCccEEecCCcchhh-hh-------hhhhhhcCCCc-cccCcccCC-CcCccCcCCCChhHHHHHHHHHhh
Q 019198 231 QLVSKPEQFDVMVTPNLYGNL-VS-------NTAAGIAGGTG-VMPGAGNVG-NEKVVEQKKANPVALLLSSAMMLR 297 (344)
Q Consensus 231 ~Lv~~P~~fdVIvt~NlfGDI-lS-------Dlaa~l~GglG-l~pSa~nig-APdiaGk~iANP~a~Ils~ammL~ 297 (344)
.+.+||++|+ ||=|= |. |-+-.++.||- +-.|. .-| |-||||||+|||.+++-|.-|...
T Consensus 271 ----~~~~~D~vla--MYHDQgl~p~K~l~f~~~vnitlGLp~iRtS~-dHGta~diagkg~a~~~s~~~Ai~~a~~ 340 (349)
T 4aty_A 271 ----TNPDIDVFVA--MYHDQGHIPVKLRAGRHSAALSIGAGVLFSSV-GHGSGFDIAGTLLADPAPLLGAIRLVTT 340 (349)
T ss_dssp ----TCTTCSEEEE--SSHHHHHHHHHHHHTTSEEEEEESSSSEEEEC-CSCCCTTSTTTTCCCCHHHHHHHHHHHH
T ss_pred ----ccCCCCEEEE--cccccchHHHHhcccCCcEEEecCCCeeEeCC-CCChhhhhccCCCCChHHHHHHHHHHHH
Confidence 3468999988 45441 01 11112233332 12333 444 999999999999999988776654
No 40
>2af4_C Phosphate acetyltransferase; PTA dimer with one COA ligand bound PER monomer, acyltransferase; HET: COA; 2.15A {Methanosarcina thermophila} SCOP: c.77.1.5 PDB: 1qzt_A* 2af3_C*
Probab=62.49 E-value=35 Score=32.18 Aligned_cols=98 Identities=21% Similarity=0.184 Sum_probs=63.8
Q ss_pred eeHHHHHHHHHHHHHHHHh-cC-CCceEEEeccc-hh-h-hchHHHHHHHHHHHhhCCCceee-eeeHhHHHHHHHh---
Q 019198 164 ITKFCSERIAKYAFEYAYL-NY-RKKVTAVHKAN-IM-K-LADGLFLESCREVATKYPSIKYN-EIIVDNCCMQLVS--- 234 (344)
Q Consensus 164 ~Tr~~~eRiar~AFe~A~~-r~-~~~Vt~v~KaN-vl-k-~tdglf~~~~~eva~eyp~I~~~-~~~vD~~~~~Lv~--- 234 (344)
.|.+...+|++.+-++|++ -| .-||-+..=++ .. + .....-++.++.+.+++|++.++ .+-.|++...=+.
T Consensus 178 pt~e~l~~ia~~~~~~~~~~~Gi~PrVAlLs~ge~g~~~~~~~~~v~~A~~ll~~~~~~~~v~Gpl~~D~a~~~~~~~~k 257 (333)
T 2af4_C 178 PSVEDVANIAVISAKTFELLVQDVPKVAMLSYSTKGSAKSKLTEATIASTKLAQELAPDIAIDGELQVDAAIVPKVAASK 257 (333)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCSCCEEEEECSCSTTSCCSHHHHHHHHHHHHHHHHCTTSEEEEEECHHHHHCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCeEEEEeCccCCCCCCCCcHHHHHHHHHHhccCCCcEEEecCcHHHhcCHHHHHhc
Confidence 4688888999999999988 44 34666654211 11 1 01123455555555678998876 5577877655555
Q ss_pred ---CC--CCccEEecCCcc-hhhhhhhhhhhcC
Q 019198 235 ---KP--EQFDVMVTPNLY-GNLVSNTAAGIAG 261 (344)
Q Consensus 235 ---~P--~~fdVIvt~Nlf-GDIlSDlaa~l~G 261 (344)
+| +++||+|+||+| |+|.-=+..-+.|
T Consensus 258 ~~~s~~~G~aDvlV~pd~d~GNI~~K~l~~~~~ 290 (333)
T 2af4_C 258 APGSPVAGKANVFIFPDLNCGNIAYKIAQRLAK 290 (333)
T ss_dssp STTCSSTTSCCEEECSSHHHHHHHHHHHHHTSC
T ss_pred CCCCccCCcCCEEEECCchHHHHHHHHHHHccC
Confidence 44 589999999997 7887766554433
No 41
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=58.41 E-value=20 Score=29.20 Aligned_cols=27 Identities=33% Similarity=0.325 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEec
Q 019198 166 KFCSERIAKYAFEYAYLNYRKKVTAVHK 193 (344)
Q Consensus 166 r~~~eRiar~AFe~A~~r~~~~Vt~v~K 193 (344)
.+.+++.+++|.++|+.. ..+|+++|=
T Consensus 35 s~~s~~al~~A~~la~~~-~a~l~llhV 61 (155)
T 3dlo_A 35 SDRAERVLRFAAEEARLR-GVPVYVVHS 61 (155)
T ss_dssp SHHHHHHHHHHHHHHHHH-TCCEEEEEE
T ss_pred CHHHHHHHHHHHHHHHhc-CCEEEEEEE
Confidence 357899999999999987 467888874
No 42
>1td9_A Phosphate acetyltransferase; structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.75A {Bacillus subtilis} SCOP: c.77.1.5 PDB: 1xco_A
Probab=56.87 E-value=50 Score=31.07 Aligned_cols=99 Identities=17% Similarity=0.114 Sum_probs=64.5
Q ss_pred eeHHHHHHHHHHHHHHHHhcC-CCceEEEeccc-hh-h-hchHHHHHHHHHHHhhCCCceee-eeeHhHHHHHHHh----
Q 019198 164 ITKFCSERIAKYAFEYAYLNY-RKKVTAVHKAN-IM-K-LADGLFLESCREVATKYPSIKYN-EIIVDNCCMQLVS---- 234 (344)
Q Consensus 164 ~Tr~~~eRiar~AFe~A~~r~-~~~Vt~v~KaN-vl-k-~tdglf~~~~~eva~eyp~I~~~-~~~vD~~~~~Lv~---- 234 (344)
.|.+...++++.+-+++++-| +-||-+..=.+ .. + .....-++.++.+.+++|++.++ .+-.|++...=+.
T Consensus 179 pt~e~l~~ia~~~~~~~~~~Gi~PrVAlLs~ge~G~~~~~~~~~i~~A~~ll~~~~~~~~v~Gpl~~D~a~~~~~~~~k~ 258 (329)
T 1td9_A 179 PDSQDLAEIAIESANTAKMFDIEPRVAMLSFSTKGSAKSDETEKVADAVKIAKEKAPELTLDGEFQFDAAFVPSVAEKKA 258 (329)
T ss_dssp CCHHHHHHHHHHHHHHHHTTTCCCCEEEECSSSTTSSCSHHHHHHHHHHHHHHHHCTTSCEEEEECHHHHHCHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCeEEEEeCccCCCCCCCchHHHHHHHHHHHhhCCCCEEEeCCcHHHHcCHHHHHhhC
Confidence 478888999999999998854 34676665211 11 1 01113455555555678988875 5577877755554
Q ss_pred --CC--CCccEEecCCcc-hhhhhhhhhhhcCC
Q 019198 235 --KP--EQFDVMVTPNLY-GNLVSNTAAGIAGG 262 (344)
Q Consensus 235 --~P--~~fdVIvt~Nlf-GDIlSDlaa~l~Gg 262 (344)
+| +++||+|++|+| |+|.-=+..-+.|.
T Consensus 259 ~~s~~~G~aDvlV~pd~d~GNI~~K~l~~~~~~ 291 (329)
T 1td9_A 259 PDSEIKGDANVFVFPSLEAGNIGYKIAQRLGNF 291 (329)
T ss_dssp TTSSCSSCCSEEECSSHHHHHHHHHHHHHTTTC
T ss_pred CCCccCCCCCEEEECChhHHHHHHHHHHHhcCC
Confidence 33 589999999997 88877776554443
No 43
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=56.34 E-value=48 Score=28.97 Aligned_cols=80 Identities=11% Similarity=0.085 Sum_probs=44.0
Q ss_pred eHHHHHHHHHHHHHHHHhc--CCCc--eEEEe-ccchhhhchHHHHHHHHHHHhhCCCceeeeee-----Hh---HHHHH
Q 019198 165 TKFCSERIAKYAFEYAYLN--YRKK--VTAVH-KANIMKLADGLFLESCREVATKYPSIKYNEII-----VD---NCCMQ 231 (344)
Q Consensus 165 Tr~~~eRiar~AFe~A~~r--~~~~--Vt~v~-KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~-----vD---~~~~~ 231 (344)
...+.+..+++..+..... |.++ +.++. ..+.. +.....+-|.+..+++|++++...+ .+ .++.+
T Consensus 107 ~~~~~~~~~~~L~~~~g~~~~G~r~i~i~~l~g~~~~~--~~~~R~~gf~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 184 (290)
T 2fn9_A 107 NYYGGVLAGEYFVKFLKEKYPDAKEIPYAELLGILSAQ--PTWDRSNGFHSVVDQYPEFKMVAQQSAEFDRDTAYKVTEQ 184 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSCSCEEEEEEECCTTCH--HHHHHHHHHHHHHTTSTTEEEEEEEECTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCcccceeEEEEEcCCCCc--hHHHHHHHHHHHHHhCCCCEEEEeccCCCCHHHHHHHHHH
Confidence 3445555555555442211 5677 66554 22221 1223445666666778888764332 12 24566
Q ss_pred HHhCCCCccEEecCC
Q 019198 232 LVSKPEQFDVMVTPN 246 (344)
Q Consensus 232 Lv~~P~~fdVIvt~N 246 (344)
|++...++|.|+|.|
T Consensus 185 ll~~~~~~~ai~~~~ 199 (290)
T 2fn9_A 185 ILQAHPEIKAIWCGN 199 (290)
T ss_dssp HHHHCTTCCEEEESS
T ss_pred HHHhCCCCcEEEECC
Confidence 676656799999987
No 44
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=56.04 E-value=30 Score=30.25 Aligned_cols=181 Identities=12% Similarity=0.109 Sum_probs=88.2
Q ss_pred CCceEEEEEcCCCC---cHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHH--HhcCeEEEccccCCCCCCCC
Q 019198 27 GSPRAVTLIPGDGI---GPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSI--RKNKVCLKGGLKTPVGGGVS 101 (344)
Q Consensus 27 ~~~~~I~vi~GDGI---GpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~--~~~da~l~G~~~~p~~~~~~ 101 (344)
+++++|+++-.+-- -.++...+.+.++..|..+.+. +.... ..-..+.++.+ ++.|+++..+...+. ..
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~-~~~~~~~~~~l~~~~vdgiI~~~~~~~~---~~ 79 (293)
T 3l6u_A 6 PKRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVA--TSQNS-RISEREQILEFVHLKVDAIFITTLDDVY---IG 79 (293)
T ss_dssp ---CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEE--ECSSC-HHHHHHHHHHHHHTTCSEEEEECSCTTT---TH
T ss_pred CCCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEE--CCCCC-HHHHHHHHHHHHHcCCCEEEEecCChHH---HH
Confidence 35688999855432 3456666666666667655543 33211 00111333333 468999887654321 10
Q ss_pred chhHHHHhhcCcEEEEEEeecCCCCCCCcccccEEEEecCCceeeecccceeeCCEEEEEEEeeHHHHHHHHHHHHHH--
Q 019198 102 SLNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEY-- 179 (344)
Q Consensus 102 s~~~~LR~~ldlyanvRP~~~~pg~~~~~~~vDivIvREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~-- 179 (344)
.....+++ .++.+|++-...++. +. ...+..-...+.+..+++..+.
T Consensus 80 ~~~~~~~~---------------------~~iPvV~~~~~~~~~---------~~-~~~V~~D~~~~g~~~~~~l~~~~~ 128 (293)
T 3l6u_A 80 SAIEEAKK---------------------AGIPVFAIDRMIRSD---------AV-VSSITSNNQMIGEQLASYIKNELI 128 (293)
T ss_dssp HHHHHHHH---------------------TTCCEEEESSCCCCT---------TC-SEEEEECHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---------------------cCCCEEEecCCCCCC---------cc-eeEEecCHHHHHHHHHHHHHHHhc
Confidence 11122221 123344442111110 00 0122223345555555555552
Q ss_pred HHh-cCCCceEEEec-cchhhhchHHHHHHHHHHHhhCCCceeeeeeH--------hHHHHHHHhCCCCccEEecCC
Q 019198 180 AYL-NYRKKVTAVHK-ANIMKLADGLFLESCREVATKYPSIKYNEIIV--------DNCCMQLVSKPEQFDVMVTPN 246 (344)
Q Consensus 180 A~~-r~~~~Vt~v~K-aNvlk~tdglf~~~~~eva~eyp~I~~~~~~v--------D~~~~~Lv~~P~~fdVIvt~N 246 (344)
-.+ +.++++-++.- .+.. +.....+-|.+..+++|++++..... -.++.++++...++|.|+|.|
T Consensus 129 g~~~~~~~~i~~i~g~~~~~--~~~~R~~gf~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~ 203 (293)
T 3l6u_A 129 KQTGRSTGRIVEITGTANVY--TTNERHRGFLKGIENEPTLSIVDSVSGNYDPVTSERVMRQVIDSGIPFDAVYCHN 203 (293)
T ss_dssp HHHSCSCEEEEEEECSTTCH--HHHHHHHHHHHHHTTCTTEEEEEEEECTTCHHHHHHHHHHHHHTTCCCSEEEESS
T ss_pred cCCCCCCceEEEEECCCCCc--hHHHHHHHHHHHHHhCCCcEEeeeccCCCCHHHHHHHHHHHHHhCCCCCEEEECC
Confidence 221 11127877753 2221 23345566777777889988765432 134567777777899999987
No 45
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=55.69 E-value=57 Score=28.75 Aligned_cols=175 Identities=11% Similarity=0.108 Sum_probs=86.4
Q ss_pred CCceEEEEEcCCCC---cH-HHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHH--HhcCeEEEccccCCCCCCC
Q 019198 27 GSPRAVTLIPGDGI---GP-LVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSI--RKNKVCLKGGLKTPVGGGV 100 (344)
Q Consensus 27 ~~~~~I~vi~GDGI---Gp-EV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~--~~~da~l~G~~~~p~~~~~ 100 (344)
++..+|+++--+-- -. ++...+.+.++..|..+.+.. .... ..-..+.++.+ ++.|+++..+...+.
T Consensus 11 ~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~--~~~~-~~~~~~~~~~l~~~~vdGiIi~~~~~~~---- 83 (301)
T 3miz_A 11 SRSNTFGIITDYVSTTPYSVDIVRGIQDWANANGKTILIAN--TGGS-SEREVEIWKMFQSHRIDGVLYVTMYRRI---- 83 (301)
T ss_dssp -CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHTTCEEEEEE--CTTC-HHHHHHHHHHHHHTTCSEEEEEEEEEEE----
T ss_pred CCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHCCCEEEEEe--CCCC-hHHHHHHHHHHHhCCCCEEEEecCCccH----
Confidence 35688998854432 23 899999999998887665533 2111 01112333433 367888776643210
Q ss_pred CchhHHHHhhcCcEEEEEEeecCCCCCCCcccccEEEEecCCceeeecccceeeCCEEEEEEEeeHHHHHHHHHHHHHHH
Q 019198 101 SSLNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYA 180 (344)
Q Consensus 101 ~s~~~~LR~~ldlyanvRP~~~~pg~~~~~~~vDivIvREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A 180 (344)
.+.-+ ...++.+|++-...++. .. .+ .+..- -+...+.|.++-
T Consensus 84 ---------------------~~~~~--~~~~iPvV~~~~~~~~~----~~--~~----~V~~D----~~~~g~~a~~~L 126 (301)
T 3miz_A 84 ---------------------VDPES--GDVSIPTVMINCRPQTR----EL--LP----SIEPD----DYQGARDLTRYL 126 (301)
T ss_dssp ---------------------CCCCC--TTCCCCEEEEEEECSST----TS--SC----EEEEC----HHHHHHHHHHHH
T ss_pred ---------------------HHHHH--HhCCCCEEEECCCCCCC----CC--CC----EEeeC----hHHHHHHHHHHH
Confidence 00000 01245666652211110 00 00 11111 233456677777
Q ss_pred HhcCCCceEEEeccchhhhchHHHHHHHHHHHhhC-CCceee-------------eeeHhHHHHHHHhCCCCccEEecCC
Q 019198 181 YLNYRKKVTAVHKANIMKLADGLFLESCREVATKY-PSIKYN-------------EIIVDNCCMQLVSKPEQFDVMVTPN 246 (344)
Q Consensus 181 ~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~ey-p~I~~~-------------~~~vD~~~~~Lv~~P~~fdVIvt~N 246 (344)
.++|.+++-++.-..-.. +.....+-+.+..+++ ..+... .-++..++.++++....+|.|+|.|
T Consensus 127 ~~~G~~~I~~i~~~~~~~-~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~ 205 (301)
T 3miz_A 127 LERGHRRIGYIRLNPILL-GAELRLDAFRRTTSEFGLTENDLSISLGMDGPVGAENNYVFAAATEMLKQDDRPTAIMSGN 205 (301)
T ss_dssp HTTTCCSEEEEECCTTSH-HHHHHHHHHHHHHHHHTCCGGGEEEEECEESSTTSCEECHHHHHHHHHTSTTCCSEEEESS
T ss_pred HHcCCCeEEEEecCccch-hHHHHHHHHHHHHHHcCCCCCcceEEEcCCCCcCccccHHHHHHHHHHcCCCCCcEEEECC
Confidence 778888988886432111 1122333333333222 111111 1111167778888878899999987
No 46
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=55.42 E-value=25 Score=31.78 Aligned_cols=73 Identities=10% Similarity=0.053 Sum_probs=43.6
Q ss_pred HHHHHHHHHHh--cCCCceEEEecc-chhhhchHHHHHHHHHHHhhCCCceeeeeeH-----h---HHHHHHHhC-CCCc
Q 019198 172 IAKYAFEYAYL--NYRKKVTAVHKA-NIMKLADGLFLESCREVATKYPSIKYNEIIV-----D---NCCMQLVSK-PEQF 239 (344)
Q Consensus 172 iar~AFe~A~~--r~~~~Vt~v~Ka-Nvlk~tdglf~~~~~eva~eyp~I~~~~~~v-----D---~~~~~Lv~~-P~~f 239 (344)
..+.|.++..+ +|.++|.++.-. +.. +.....+-|.+..+++|++++...+. + .++.+|++. ..++
T Consensus 121 ~g~~a~~~L~~~~~G~~~I~~i~g~~~~~--~~~~R~~Gf~~al~~~pgi~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 198 (332)
T 2rjo_A 121 YGEETATQLFKSMGGKGGVVALGGIFSNV--PAIERKAGLDAALKKFPGIQLLDFQVADWNSQKAFPIMQAWMTRFNSKI 198 (332)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEECCTTCH--HHHHHHHHHHHHHHTCTTEEEEEEEECTTCHHHHHHHHHHHHHHHGGGE
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCc--cHHHHHHHHHHHHHhCCCcEEEeeccCCCCHHHHHHHHHHHHHhcCCCe
Confidence 34455555555 577888887632 211 12234455666667788887654321 1 245566665 5679
Q ss_pred cEEecCC
Q 019198 240 DVMVTPN 246 (344)
Q Consensus 240 dVIvt~N 246 (344)
|.|+|.|
T Consensus 199 ~aI~~~n 205 (332)
T 2rjo_A 199 KGVWAAN 205 (332)
T ss_dssp EEEEESS
T ss_pred eEEEECC
Confidence 9999987
No 47
>3tsn_A 4-hydroxythreonine-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: UNL; 2.63A {Campylobacter jejuni subsp}
Probab=55.02 E-value=7.2 Score=37.99 Aligned_cols=67 Identities=10% Similarity=0.120 Sum_probs=39.9
Q ss_pred eeHhHHHHHHHhCCCCccEEecCCcchhhhhhhhhhhcCCCccccCcc------------cCC-CcCccCcC-CCChhHH
Q 019198 223 IIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGAG------------NVG-NEKVVEQK-KANPVAL 288 (344)
Q Consensus 223 ~~vD~~~~~Lv~~P~~fdVIvt~NlfGDIlSDlaa~l~GglGl~pSa~------------nig-APdiaGk~-iANP~a~ 288 (344)
.-.|++-.+-.+ .+||.+|+ ||= |.+---.--+|+--+.+ .-| |-|||||| +|||.++
T Consensus 282 ~paDT~F~~~~~--~~~D~vlA--MYH----DQGliplK~l~F~~gVNvTlGLP~IRTSvDHGTAfDIAGkG~~Ad~~Sl 353 (367)
T 3tsn_A 282 LVADTAFTKTGL--KNCNRLVA--MYH----DLALAPLKALYFDKSINVSLNLPIIRVSVDHGTAFDKAYKNAKINTKSY 353 (367)
T ss_dssp BCHHHHTSHHHH--HHCCEEEE--SSH----HHHHHHHHHHCTTTCEEEEESSSSCEEECCCCSCTTSCSSCCCCCCHHH
T ss_pred cCchhhhccchh--cCCCEEEE--ccc----cCcchhhhhcccCccEEEecCCCeeeecCCCCcchhhcCCCCcCChHHH
Confidence 334555443322 57998887 343 34332222233333330 334 99999999 9999999
Q ss_pred HHHHHHHhh
Q 019198 289 LLSSAMMLR 297 (344)
Q Consensus 289 Ils~ammL~ 297 (344)
+-|.-+..+
T Consensus 354 ~~Ai~~A~~ 362 (367)
T 3tsn_A 354 FEAAKFAIN 362 (367)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988776544
No 48
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=54.56 E-value=14 Score=35.87 Aligned_cols=60 Identities=25% Similarity=0.261 Sum_probs=35.6
Q ss_pred HHhcCCCceEEEeccchhhhchHHHHHHHHHHHh--hCCC-ceeeeeeHhHHHHHHHhCCCCccEEecCCcchhhhh
Q 019198 180 AYLNYRKKVTAVHKANIMKLADGLFLESCREVAT--KYPS-IKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVS 253 (344)
Q Consensus 180 A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~--eyp~-I~~~~~~vD~~~~~Lv~~P~~fdVIvt~NlfGDIlS 253 (344)
|.+.|.++|+.|+++++. +.++++.+ .+.+ |++-+--+.. +.-|++|||||++ ++|..|-
T Consensus 101 Aa~aGA~~V~ave~s~~~--------~~a~~~~~~n~~~~~i~~i~~~~~~-----~~lpe~~DvivsE-~~~~~l~ 163 (376)
T 4hc4_A 101 CAQAGARRVYAVEASAIW--------QQAREVVRFNGLEDRVHVLPGPVET-----VELPEQVDAIVSE-WMGYGLL 163 (376)
T ss_dssp HHHTTCSEEEEEECSTTH--------HHHHHHHHHTTCTTTEEEEESCTTT-----CCCSSCEEEEECC-CCBTTBT
T ss_pred HHHhCCCEEEEEeChHHH--------HHHHHHHHHcCCCceEEEEeeeeee-----ecCCccccEEEee-ccccccc
Confidence 445578899999987633 22344332 2333 6655544432 3468999999984 4454443
No 49
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=53.49 E-value=33 Score=34.59 Aligned_cols=66 Identities=11% Similarity=0.167 Sum_probs=42.0
Q ss_pred HHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeeeHhHHHHHHHhCCCCccEEecCCcch
Q 019198 175 YAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYG 249 (344)
Q Consensus 175 ~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~vD~~~~~Lv~~P~~fdVIvt~NlfG 249 (344)
.+..+|+. | -.||-+|= +. --.++++.-|++.+.+.+++...|.-...--..+++||||+|.-++=
T Consensus 80 ~~~~la~~-g-a~V~giD~------~~-~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~e 145 (569)
T 4azs_A 80 FSLSLASK-G-ATIVGIDF------QQ-ENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVFH 145 (569)
T ss_dssp HHHHHHHT-T-CEEEEEES------CH-HHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESCHH
T ss_pred HHHHHHhC-C-CEEEEECC------CH-HHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcchh
Confidence 34556654 3 57999982 22 34577777777777666666665543221123678999999988764
No 50
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=53.09 E-value=43 Score=28.79 Aligned_cols=90 Identities=9% Similarity=0.006 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeeeH-----h---HHHHHHHhCCC-CccE
Q 019198 171 RIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIV-----D---NCCMQLVSKPE-QFDV 241 (344)
Q Consensus 171 Riar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~v-----D---~~~~~Lv~~P~-~fdV 241 (344)
...+.|.++-.++|.+++-++.-..-.. +.....+-|.+..++++ ++...... + .++.++++... .+|.
T Consensus 106 ~~~~~a~~~L~~~G~~~i~~i~~~~~~~-~~~~R~~gf~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a 183 (272)
T 3o74_A 106 DASRQLAASLLSSAPRSIALIGARPELS-VSQARAGGFDEALQGYT-GEVRRYQGEAFSRECGQRLMQQLIDDLGGLPDA 183 (272)
T ss_dssp HHHHHHHHHHHTTCCSEEEEEEECTTSH-HHHHHHHHHHHHTTTCC-SEEEEEEESSSSHHHHHHHHHHHHHHHTSCCSE
T ss_pred HHHHHHHHHHHHCCCcEEEEEecCCCCc-cHHHHHHHHHHHHHHcC-CChheeecCCCCHHHHHHHHHHHHhcCCCCCcE
Confidence 3455677777778888988885432221 22344556666666664 54433322 1 34556666555 8999
Q ss_pred EecCCcchhhhhhhhhhhcCCCcc
Q 019198 242 MVTPNLYGNLVSNTAAGIAGGTGV 265 (344)
Q Consensus 242 Ivt~NlfGDIlSDlaa~l~GglGl 265 (344)
|+|.| |.++--+....-..|+
T Consensus 184 i~~~~---d~~a~g~~~al~~~g~ 204 (272)
T 3o74_A 184 LVTTS---YVLLQGVFDTLQARPV 204 (272)
T ss_dssp EEESS---HHHHHHHHHHHHTSCG
T ss_pred EEEeC---chHHHHHHHHHHHcCC
Confidence 99987 4333333333334454
No 51
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=51.64 E-value=65 Score=25.16 Aligned_cols=69 Identities=13% Similarity=0.208 Sum_probs=48.8
Q ss_pred ceEEEEEcCCCCcHHHH-HHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHHHhcCeEEEccccCCCCCCCCchhHHH
Q 019198 29 PRAVTLIPGDGIGPLVT-NAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRKNKVCLKGGLKTPVGGGVSSLNVQL 107 (344)
Q Consensus 29 ~~~I~vi~GDGIGpEV~-~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~~~~da~l~G~~~~p~~~~~~s~~~~L 107 (344)
.++|.+.=|.|++-.++ ...+++++.-|++++.+.++++. +.+ .+.++|++|.||-.. .....+
T Consensus 3 mkkIll~Cg~G~sTS~l~~k~~~~~~~~gi~~~i~a~~~~~----~~~----~~~~~Dvil~~pqv~-------~~~~~~ 67 (106)
T 1e2b_A 3 KKHIYLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETL----AGE----KGQNADVVLLGPQIA-------YMLPEI 67 (106)
T ss_dssp CEEEEEECSSSTTTHHHHHHHHHHHHHSCCSEEEEEECSSS----TTH----HHHHCSEEEECTTSG-------GGHHHH
T ss_pred CcEEEEECCCchhHHHHHHHHHHHHHHCCCCeEEEEecHHH----HHh----hccCCCEEEEccchh-------hhHHHH
Confidence 46899999999988754 45666777779998887777743 232 257899999988332 335567
Q ss_pred HhhcC
Q 019198 108 RKELD 112 (344)
Q Consensus 108 R~~ld 112 (344)
++.++
T Consensus 68 ~~~~~ 72 (106)
T 1e2b_A 68 QRLLP 72 (106)
T ss_dssp HHHSS
T ss_pred HHHhc
Confidence 77664
No 52
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=49.47 E-value=1.4e+02 Score=26.35 Aligned_cols=122 Identities=9% Similarity=0.021 Sum_probs=67.5
Q ss_pred CCcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHH--HHhcCeEEEccccCCCCCC--CCchhH-HHHhhcCc
Q 019198 39 GIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDS--IRKNKVCLKGGLKTPVGGG--VSSLNV-QLRKELDL 113 (344)
Q Consensus 39 GIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~--~~~~da~l~G~~~~p~~~~--~~s~~~-~LR~~ldl 113 (344)
.-..+..+...+-++..++++++....-| ...++..+. -+++|.+++|.-+...... ..|... .+|+
T Consensus 47 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~g----~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~vl~~---- 118 (290)
T 3mt0_A 47 RDHSAALNDLAQELREEGYSVSTNQAWKD----SLHQTIIAEQQAEGCGLIIKQHFPDNPLKKAILTPDDWKLLRF---- 118 (290)
T ss_dssp SCCHHHHHHHHHHHHHTTCCEEEEEECSS----SHHHHHHHHHHHHTCSEEEEECCCSCTTSTTSCCHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHhhCCCeEEEEEEeCC----CHHHHHHHHHHhcCCCEEEEecccCCchhhcccCHHHHHHHhc----
Confidence 44567777777777777888777553221 223344444 3569999999876532111 112211 1222
Q ss_pred EEEEEEeecCCCCCCCcccccEEEEecCCceeeecccceeeCCEEEEEEEeeHH-----HHHHHHHHHHHHHHhcCCCce
Q 019198 114 YAALVNCFNLPGLPTRHQNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKF-----CSERIAKYAFEYAYLNYRKKV 188 (344)
Q Consensus 114 yanvRP~~~~pg~~~~~~~vDivIvREnteG~Y~g~e~~~~~~va~~~~~~Tr~-----~~eRiar~AFe~A~~r~~~~V 188 (344)
-+.+++++++...- .. ..+...+...... -+++.+++|+++|+.. ..+|
T Consensus 119 -----------------~~~PVlvv~~~~~~---~~-----~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~-~a~l 172 (290)
T 3mt0_A 119 -----------------APCPVLMTKTARPW---TG-----GKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLA-KATL 172 (290)
T ss_dssp -----------------CSSCEEEECCCSCS---TT-----CEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHT-TCEE
T ss_pred -----------------CCCCEEEecCCCCC---CC-----CeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHc-CCeE
Confidence 13567777743321 11 1122222221111 1799999999999987 4788
Q ss_pred EEEecc
Q 019198 189 TAVHKA 194 (344)
Q Consensus 189 t~v~Ka 194 (344)
+++|=.
T Consensus 173 ~ll~v~ 178 (290)
T 3mt0_A 173 HVISAH 178 (290)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 888743
No 53
>4aty_A Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; oxidoreductase; 1.85A {Burkholderia xenovorans LB400}
Probab=45.82 E-value=12 Score=35.94 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=18.3
Q ss_pred CceEEEEEcCC--CCcHHHHHHHH
Q 019198 28 SPRAVTLIPGD--GIGPLVTNAVE 49 (344)
Q Consensus 28 ~~~~I~vi~GD--GIGpEV~~~~~ 49 (344)
++.+|++-.|| ||||||+-.+.
T Consensus 7 ~~~kIaIT~GDPaGIGpEIilKa~ 30 (349)
T 4aty_A 7 RAMTVALAIGDPNGIGPEIAVKAA 30 (349)
T ss_dssp CCCCEEEECCCTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCcchhHHHHHHHHH
Confidence 46899999997 99999976553
No 54
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=45.77 E-value=43 Score=30.14 Aligned_cols=74 Identities=9% Similarity=0.045 Sum_probs=41.1
Q ss_pred HHHHHHHHHhc--CCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeee-H----h---HHHHHHHhCCCCccEE
Q 019198 173 AKYAFEYAYLN--YRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEII-V----D---NCCMQLVSKPEQFDVM 242 (344)
Q Consensus 173 ar~AFe~A~~r--~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~-v----D---~~~~~Lv~~P~~fdVI 242 (344)
.+.|.++..++ |.+++.++.-..-.. +.....+-|.+..+++|++++.... - + .++.+|++....+|.|
T Consensus 114 g~~a~~~L~~~~~G~~~I~~i~~~~~~~-~~~~R~~Gf~~al~~~pg~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~aI 192 (325)
T 2x7x_A 114 GRSVGNYIASSLKGKGNIVELTGLSGST-PAMERHQGFMAAISKFPDIKLIDKADAAWERGPAEIEMDSMLRRHPKIDAV 192 (325)
T ss_dssp HHHHHHHHHHHTTTEEEEEEEESCTTSH-HHHHHHHHHHHHHHTCTEEEEEEEEECTTSHHHHHHHHHHHHHHCSCCCEE
T ss_pred HHHHHHHHHHHcCCCceEEEEECCCCCc-cHHHHHHHHHHHHHhCCCCEEEeeecCCCCHHHHHHHHHHHHHhCCCCCEE
Confidence 34444555443 677888775321111 1223345556666678888765422 1 1 2445666655568999
Q ss_pred ecCCc
Q 019198 243 VTPNL 247 (344)
Q Consensus 243 vt~Nl 247 (344)
+|.|=
T Consensus 193 ~~~nd 197 (325)
T 2x7x_A 193 YAHND 197 (325)
T ss_dssp EESST
T ss_pred EECCC
Confidence 99874
No 55
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=45.65 E-value=55 Score=28.50 Aligned_cols=67 Identities=12% Similarity=0.190 Sum_probs=48.9
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHHH-----hcCeEEEccccC
Q 019198 24 PGDGSPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIR-----KNKVCLKGGLKT 94 (344)
Q Consensus 24 ~~~~~~~~I~vi~GDGIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~~-----~~da~l~G~~~~ 94 (344)
+-|..+.+|++|-|---=-++++++.++|+.+|+++|..-.-+ ...|++..+-.+ .+++++-++-..
T Consensus 7 ~~~~m~~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~ev~V~Sa----HR~p~~~~~~~~~a~~~g~~ViIa~AG~a 78 (174)
T 3kuu_A 7 SAYAAGVKIAIVMGSKSDWATMQFAADVLTTLNVPFHVEVVSA----HRTPDRLFSFAEQAEANGLHVIIAGNGGA 78 (174)
T ss_dssp CSSCCCCCEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCT----TTCHHHHHHHHHHTTTTTCSEEEEEEESS
T ss_pred ccccCCCcEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEEcc----cCCHHHHHHHHHHHHhCCCcEEEEECChh
Confidence 4455566899998866668999999999999998855433222 467888887775 368888777543
No 56
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=45.12 E-value=1e+02 Score=26.42 Aligned_cols=74 Identities=8% Similarity=0.005 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeee-------eHh---HHHHHHHhCCCCcc
Q 019198 171 RIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEI-------IVD---NCCMQLVSKPEQFD 240 (344)
Q Consensus 171 Riar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~-------~vD---~~~~~Lv~~P~~fd 240 (344)
...+.|.++..++|.+++.++.-..-.. +.....+-|.+..+++. ++++.. -.+ ..+.++++....+|
T Consensus 106 ~~~~~a~~~L~~~G~~~i~~i~~~~~~~-~~~~R~~gf~~~l~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 183 (275)
T 3d8u_A 106 EVGKACTRHLIEQGFKNVGFIGARGNHS-TLQRQLHGWQSAMIENY-LTPDHFLTTHEAPSSQLGAEGLAKLLLRDSSLN 183 (275)
T ss_dssp HHHHHHHHHHHTTTCCCEEEEECSCSSH-HHHHHHHHHHHHHHHTT-CCCCCEEECSSCCCHHHHHHHHHHHHTTCTTCC
T ss_pred HHHHHHHHHHHHCCCCeEEEEcCCCCCc-hHHHHHHHHHHHHHHcC-CCCCccEEEeCCCChhHHHHHHHHHHhCCCCCC
Confidence 3445566666667888888775321111 11222334444433331 221111 112 34567777777899
Q ss_pred EEecCC
Q 019198 241 VMVTPN 246 (344)
Q Consensus 241 VIvt~N 246 (344)
.|+|.|
T Consensus 184 ai~~~~ 189 (275)
T 3d8u_A 184 ALVCSH 189 (275)
T ss_dssp EEEESS
T ss_pred EEEEcC
Confidence 999987
No 57
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=45.10 E-value=59 Score=28.58 Aligned_cols=72 Identities=11% Similarity=0.050 Sum_probs=39.7
Q ss_pred HHHHHHHHHhc-C--CCceEEEe-ccchhhhchHHHHHHHHHHHhhCCCceeeeee-----Hh---HHHHHHHhCCCCcc
Q 019198 173 AKYAFEYAYLN-Y--RKKVTAVH-KANIMKLADGLFLESCREVATKYPSIKYNEII-----VD---NCCMQLVSKPEQFD 240 (344)
Q Consensus 173 ar~AFe~A~~r-~--~~~Vt~v~-KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~-----vD---~~~~~Lv~~P~~fd 240 (344)
.+.|.++-.++ | .+++-++. ..+.. +...-.+-+.+..+++|++++.... .+ .++.+|++.+..+|
T Consensus 118 g~~a~~~L~~~~G~~~~~I~~i~g~~~~~--~~~~R~~Gf~~al~~~~g~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 195 (288)
T 1gud_A 118 GAKGASFIIDKLGAEGGEVAIIEGKAGNA--SGEARRNGATEAFKKASQIKLVASQPADWDRIKALDVATNVLQRNPNIK 195 (288)
T ss_dssp HHHHHHHHHHHHGGGCEEEEEEECSTTCH--HHHHHHHHHHHHHHTCTTEEEEEEEECTTCHHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHHhCCCCCEEEEEeCCCCCc--hHhHHHHHHHHHHHhCCCcEEEEeecCCccHHHHHHHHHHHHHhCCCce
Confidence 34444544444 5 67887775 22221 1122234455555667887654332 11 24456676666799
Q ss_pred EEecCC
Q 019198 241 VMVTPN 246 (344)
Q Consensus 241 VIvt~N 246 (344)
.|+|.|
T Consensus 196 ai~~~n 201 (288)
T 1gud_A 196 AIYCAN 201 (288)
T ss_dssp EEEESS
T ss_pred EEEECC
Confidence 999987
No 58
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=43.55 E-value=1.7e+02 Score=25.84 Aligned_cols=26 Identities=4% Similarity=-0.028 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHhcC-CCceEEEec
Q 019198 168 CSERIAKYAFEYAYLNY-RKKVTAVHK 193 (344)
Q Consensus 168 ~~eRiar~AFe~A~~r~-~~~Vt~v~K 193 (344)
.+++.+++|+++|+... ..+|+++|=
T Consensus 175 ~s~~al~~a~~la~~~~~~a~l~ll~v 201 (319)
T 3olq_A 175 LNLKLIELTNDLSHRIQKDPDVHLLSA 201 (319)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCEEEEEE
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEEe
Confidence 57999999999999861 357888764
No 59
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=42.74 E-value=75 Score=27.71 Aligned_cols=72 Identities=17% Similarity=0.165 Sum_probs=40.3
Q ss_pred HHHHHHHHHhc-C-CCceEEEec-cchhhhchHHHHHHHHHHHhhCCCceeeeee-----Hh---HHHHHHHhCCCCccE
Q 019198 173 AKYAFEYAYLN-Y-RKKVTAVHK-ANIMKLADGLFLESCREVATKYPSIKYNEII-----VD---NCCMQLVSKPEQFDV 241 (344)
Q Consensus 173 ar~AFe~A~~r-~-~~~Vt~v~K-aNvlk~tdglf~~~~~eva~eyp~I~~~~~~-----vD---~~~~~Lv~~P~~fdV 241 (344)
.+.|-++-.++ | .+|+.++.- .+.. +.....+-+++..++||++++.... .+ ..+.+|++.+.++|.
T Consensus 109 g~~a~~~L~~~~gg~~~I~~i~g~~~~~--~~~~R~~Gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~a 186 (283)
T 2ioy_A 109 GEMAAEFIAKALKGKGNVVELEGIPGAS--AARDRGKGFDEAIAKYPDIKIVAKQAADFDRSKGLSVMENILQAQPKIDA 186 (283)
T ss_dssp HHHHHHHHHHHTTTCEEEEEEECCTTCH--HHHHHHHHHHHHHTTCTTEEEEEEEECTTCHHHHHHHHHHHHHHCSCCCE
T ss_pred HHHHHHHHHHHcCCCceEEEEECCCCCc--cHHHHHHHHHHHHHhCCCCEEEeeccCCCCHHHHHHHHHHHHHhCCCccE
Confidence 34445555554 3 678877752 2221 1122334556666778887654321 12 234556665557999
Q ss_pred EecCC
Q 019198 242 MVTPN 246 (344)
Q Consensus 242 Ivt~N 246 (344)
|+|.|
T Consensus 187 i~~~n 191 (283)
T 2ioy_A 187 VFAQN 191 (283)
T ss_dssp EEESS
T ss_pred EEECC
Confidence 99998
No 60
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=42.59 E-value=83 Score=25.36 Aligned_cols=66 Identities=17% Similarity=0.142 Sum_probs=35.0
Q ss_pred HHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHhhC---CCceeeeeeHhHHHHHHHhCCCCccEEecCCcch
Q 019198 176 AFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKY---PSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYG 249 (344)
Q Consensus 176 AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~ey---p~I~~~~~~vD~~~~~Lv~~P~~fdVIvt~NlfG 249 (344)
+..+++ ++..+|+.+|..- -..+.+++-.+.+ +.+++...-+......+-..++.||+|++...|.
T Consensus 59 ~~~~~~-~~~~~v~~vD~~~-------~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~ 127 (187)
T 2fhp_A 59 AIEAVS-RGMDKSICIEKNF-------AALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYA 127 (187)
T ss_dssp HHHHHH-TTCSEEEEEESCH-------HHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGG
T ss_pred HHHHHH-cCCCEEEEEECCH-------HHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCCCC
Confidence 344444 4457899999542 2233334333222 2354444333333333444578999999876665
No 61
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=42.32 E-value=15 Score=28.78 Aligned_cols=26 Identities=19% Similarity=0.125 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEeccc
Q 019198 169 SERIAKYAFEYAYLNYRKKVTAVHKAN 195 (344)
Q Consensus 169 ~eRiar~AFe~A~~r~~~~Vt~v~KaN 195 (344)
+++.+++|.++|++. ..+|+++|=..
T Consensus 16 s~~al~~a~~la~~~-~a~l~ll~v~~ 41 (143)
T 3fdx_A 16 TERIISHVESEARID-DAEVHFLTVIP 41 (143)
T ss_dssp CTTHHHHHHHHHHHH-TCEEEEEEEEC
T ss_pred HHHHHHHHHHHHHhc-CCeEEEEEEec
Confidence 578899999999987 46888887443
No 62
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=42.26 E-value=1.7e+02 Score=25.30 Aligned_cols=65 Identities=5% Similarity=-0.048 Sum_probs=40.5
Q ss_pred CCceEEEEE-cC---CCCcHHHHHHHHHHHHHc-CCCeeEEEEEeeCCCCCCcH---HHHHHH--HhcCeEEEccccC
Q 019198 27 GSPRAVTLI-PG---DGIGPLVTNAVEQVMEAM-HAPIYFEKYEVHGDMKRVPQ---QVLDSI--RKNKVCLKGGLKT 94 (344)
Q Consensus 27 ~~~~~I~vi-~G---DGIGpEV~~~~~~vl~~~-~~~i~~~~~~~g~~g~~lp~---~~~~~~--~~~da~l~G~~~~ 94 (344)
+++++|+++ |. +..-.++...+.+.++.. |..+.+........ -++ +.++.+ ++.|+++..|...
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~---~~~~~~~~i~~l~~~~vdgiii~~~~~ 80 (304)
T 3gbv_A 6 NKKYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDPY---DYNSFVATSQAVIEEQPDGVMFAPTVP 80 (304)
T ss_dssp -CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECSS---CHHHHHHHHHHHHTTCCSEEEECCSSG
T ss_pred CCcceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCCC---CHHHHHHHHHHHHhcCCCEEEECCCCh
Confidence 356889877 43 335577888888888887 77777765543221 122 233443 4689998877644
No 63
>3uf6_A LMO1369 protein; structural genomics, the center for structural genomics of I diseases, csgid, unknown function, transferase; HET: COD; 1.80A {Listeria monocytogenes} PDB: 3tng_A* 3u9e_A*
Probab=41.82 E-value=1.3e+02 Score=27.85 Aligned_cols=201 Identities=13% Similarity=0.088 Sum_probs=107.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEeeCC--------------C-CCCcHH---HHHHHH--hcCe
Q 019198 27 GSPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD--------------M-KRVPQQ---VLDSIR--KNKV 86 (344)
Q Consensus 27 ~~~~~I~vi~GDGIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~--------------g-~~lp~~---~~~~~~--~~da 86 (344)
..+++|++-.|+. +++++++.++++.- . + +.+.+|.+ . +.-|+. ....++ ++|+
T Consensus 16 ~~~kriv~~e~~d--~~vl~Aa~~a~~eg-~-~--~~ILvG~~~~I~~~~~~~~eIid~~~~~~aar~a~~mV~~G~ADa 89 (291)
T 3uf6_A 16 TSSFVFAVAGADD--EVVLETIRLALKQK-L-G--KFLLFGKKEDKTLTANESVTWIQTDTAEAAAQGAILAVKNKEADI 89 (291)
T ss_dssp CCCCEEEEETCCS--HHHHHHHHHHHHTT-C-C--EEEEEESSCCHHHHTSTTEEEEECCSHHHHHHHHHHHHHTTSCSE
T ss_pred cCCCeEEEeCCCC--HHHHHHHHHHHHcC-C-c--eEEEEcCHHHHhhhccCCCEEECCCChHHHHHHHHHHHHCCCCCE
Confidence 4568999998764 89999999998862 1 1 12233321 0 011121 122233 5899
Q ss_pred EEEccccCCCCCCCCchhHHHHhhcCcEEEEEEeecCCCCCCCcccccEEEEecCCceeeecccceeeCCEEEEEEEeeH
Q 019198 87 CLKGGLKTPVGGGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITK 166 (344)
Q Consensus 87 ~l~G~~~~p~~~~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~~~vDivIvREnteG~Y~g~e~~~~~~va~~~~~~Tr 166 (344)
.++|.++| ...||..|+--..+||.+. ...+-++++ ....+.+.= .+-++ ... -|-
T Consensus 90 ~vsG~~~t---------~~~lr~~l~~~~G~r~~~~-------vs~~~~~~~-p~~~~~~~~----~D~gv--N~~-P~~ 145 (291)
T 3uf6_A 90 LVKGFIPT---------ATLMHHVLKKENGLRTDQL-------LSQIAIFDI-PTYHKPLLI----TDCAM--NVA-PKT 145 (291)
T ss_dssp EEECSSCH---------HHHHHHHTCGGGSCCCSSC-------CEEEEEEEC-TTSSSCEEE----ECSSS--CSS-CCH
T ss_pred EEECCCCh---------HHHHHHHhccccCCCCCce-------eeEEEEEEE-cCCCCcEEE----eecee--ecC-CCH
Confidence 99998654 2345555432112233211 111222222 111222110 00000 000 146
Q ss_pred HHHHHHHHHHHHHHHhcCC--CceEEE---eccchhhhchHHHHHHHHHHHhh-CCCceeeee-eHhHHHHHHH------
Q 019198 167 FCSERIAKYAFEYAYLNYR--KKVTAV---HKANIMKLADGLFLESCREVATK-YPSIKYNEI-IVDNCCMQLV------ 233 (344)
Q Consensus 167 ~~~eRiar~AFe~A~~r~~--~~Vt~v---~KaNvlk~tdglf~~~~~eva~e-yp~I~~~~~-~vD~~~~~Lv------ 233 (344)
+.--.|+..+-++|+.-|- -||-+. +|.|-. . ..-++. .++.++ .|++.++-. ..|++.-.=+
T Consensus 146 e~la~ia~~aa~~ar~~Gie~PkVAlLS~s~~gs~~--~-~~~~~A-~~llk~~~~~~~vdGel~~D~Al~~~~~~~k~p 221 (291)
T 3uf6_A 146 KEKIAITENALAVAHQIGITNPKIALLSAVEEVTAK--M-PSTLEA-QEVVQHFGNQISVSGPLALDVAISKEAALHKGI 221 (291)
T ss_dssp HHHHHHHHHHHHHHHHHTCCSCCEEEECSCSSCCTT--S-HHHHHH-HHHHHHHTTTSCEEEEECHHHHHCHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEEeCCccCCcC--c-hHHHHH-HHHHHhhCCCCEEEecchHHHhcCHHHHHhhCC
Confidence 7777888889999998664 366554 444421 1 112233 344444 499888764 5888753322
Q ss_pred hCC--CCccEEecCCc-chhhhhhhhhhhcC
Q 019198 234 SKP--EQFDVMVTPNL-YGNLVSNTAAGIAG 261 (344)
Q Consensus 234 ~~P--~~fdVIvt~Nl-fGDIlSDlaa~l~G 261 (344)
.+| ++.||+|+||+ =|+|+--+...+.|
T Consensus 222 ~s~vaG~Anvli~P~l~agNi~yK~l~~~~~ 252 (291)
T 3uf6_A 222 TDSSAGEADILIAPNIETGNALYKSLVYFAG 252 (291)
T ss_dssp CCTTTTCCSEEECSSHHHHHHHHHHHHHHSC
T ss_pred CCccCCCCCEEEECChHHHHHHHHHHHHhcC
Confidence 223 47899999998 79999988876554
No 64
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=41.79 E-value=71 Score=27.73 Aligned_cols=63 Identities=8% Similarity=0.134 Sum_probs=36.9
Q ss_pred ceEEEEEcCCC---CcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHH--HhcCeEEEccccC
Q 019198 29 PRAVTLIPGDG---IGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSI--RKNKVCLKGGLKT 94 (344)
Q Consensus 29 ~~~I~vi~GDG---IGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~--~~~da~l~G~~~~ 94 (344)
+++|+++--+- --.++.....+.++..|..+.+. +.... ..-..+.++.+ ++.|+++..|...
T Consensus 15 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~-~~~~~~~~~~l~~~~vdgiIi~~~~~ 82 (298)
T 3tb6_A 15 NKTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLT--STNNN-PDNERRGLENLLSQHIDGLIVEPTKS 82 (298)
T ss_dssp CCEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEE--ECTTC-HHHHHHHHHHHHHTCCSEEEECCSST
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEE--eCCCC-hHHHHHHHHHHHHCCCCEEEEecccc
Confidence 47899985443 34577777777777777666553 22211 01112333433 4689999877654
No 65
>1vmi_A Putative phosphate acetyltransferase; NP_416953.1, structura genomics, JCSG, protein structure initiative, PSI, joint CE structural genomics; 2.32A {Escherichia coli} SCOP: c.77.1.5
Probab=41.11 E-value=63 Score=30.82 Aligned_cols=130 Identities=17% Similarity=0.120 Sum_probs=77.6
Q ss_pred eeHHHHHHHHHHHHHHHHhc-CC-CceEEEeccc----hhhhchHHHHHHHHHHHhhCCCceee-eeeHhHHHHHHHh--
Q 019198 164 ITKFCSERIAKYAFEYAYLN-YR-KKVTAVHKAN----IMKLADGLFLESCREVATKYPSIKYN-EIIVDNCCMQLVS-- 234 (344)
Q Consensus 164 ~Tr~~~eRiar~AFe~A~~r-~~-~~Vt~v~KaN----vlk~tdglf~~~~~eva~eyp~I~~~-~~~vD~~~~~Lv~-- 234 (344)
.|.+...+|++.+-++|++- |- -||-+..=++ -.+. ...-++.++.+.+++|++.++ .+-.|++...=+.
T Consensus 185 pt~e~l~~ia~~a~~~a~~~~Gi~PrVAlLs~ge~Gs~~~~~-~~~i~~A~~llk~~~~~~~v~Gpl~~D~A~~~~~~~~ 263 (355)
T 1vmi_A 185 PTAAQLADIALASAETWRAITGEEPRVAMLSFSSNGSARHPC-VANVQQATEIVRERAPKLVVDGELQFDAAFVPEVAAQ 263 (355)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHSSCCEEEEECSCSTTSSCSHH-HHHHHHHHHHHHHHCTTSEEEEEECHHHHHCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCCCCCcc-HHHHHHHHHHHhccCCCCEEEeCCChHHhhCHHHHhh
Confidence 36888889999999999885 53 4666665222 1121 123355555555678988775 4567877655444
Q ss_pred ----CC--CCccEEecCCcc-hhhhhhhhhhhcCCC--c-cccCcccCCCcCccCcCCCChhHHHHHHHHHhh
Q 019198 235 ----KP--EQFDVMVTPNLY-GNLVSNTAAGIAGGT--G-VMPGAGNVGNEKVVEQKKANPVALLLSSAMMLR 297 (344)
Q Consensus 235 ----~P--~~fdVIvt~Nlf-GDIlSDlaa~l~Ggl--G-l~pSa~nigAPdiaGk~iANP~a~Ils~ammL~ 297 (344)
+| +++||+|+||+| |+|.-=+...+.|.- | +.-+. + .|=+--..-++.-+.+.+.++...
T Consensus 264 k~~~s~~~G~aDvlV~Pd~d~GNI~~K~l~~~~~~~~~G~illGl-~--~Pvi~tS~~~s~~~i~n~ia~a~~ 333 (355)
T 1vmi_A 264 KAPASPLQGKANVMVFPSLEAGNIGYKIAQRLGGYRAVGPLIQGL-A--APMHDLSRGCSVQEIIELALVAAV 333 (355)
T ss_dssp HCTTCTTTTCCSEEECSSHHHHHHHHHHHHHHHCEEEEEEEEESB-S--SCEEECCTTCCHHHHHHHHHHHHC
T ss_pred cCCCCccCCCCCEEEECChhHHhHHHHHHHHccCccCcCceeecC-C--CcEEECCCCCCHHHHHHHHHHHHH
Confidence 44 479999999997 888777765554432 1 11111 1 343433445555566666655543
No 66
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=40.99 E-value=1.3e+02 Score=26.92 Aligned_cols=74 Identities=9% Similarity=0.181 Sum_probs=40.7
Q ss_pred HHHHHHHHHHh---cCCCceEEEeccchhhhchHHHHHHHHHHH-hhCCCceeeeee-----Hh---HHHHHHHhCCCCc
Q 019198 172 IAKYAFEYAYL---NYRKKVTAVHKANIMKLADGLFLESCREVA-TKYPSIKYNEII-----VD---NCCMQLVSKPEQF 239 (344)
Q Consensus 172 iar~AFe~A~~---r~~~~Vt~v~KaNvlk~tdglf~~~~~eva-~eyp~I~~~~~~-----vD---~~~~~Lv~~P~~f 239 (344)
..+.+.++..+ +|++++.++.=..-.. ....|.+-+.+.. +.||++++.... .+ ..+.+|++...++
T Consensus 112 ~g~~~~~~L~~~~~~g~~~i~~i~g~~~~~-~~~~r~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 190 (316)
T 1tjy_A 112 LGSMLVEMAAHQVDKEKAKVAFFYSSPTVT-DQNQWVKEAKAKISQEHPGWEIVTTQFGYNDATKSLQTAEGIIKAYPDL 190 (316)
T ss_dssp HHHHHHHHHHHHHCSSSEEEEEEESCSSCH-HHHHHHHHHHHHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHcCCCCCEEEEEEcCCCCh-hHHHHHHHHHHHHHhhCCCcEEEEeccCCCCHHHHHHHHHHHHHhCCCC
Confidence 34445555444 4677887775221111 1235566666654 458888764432 12 2334555543479
Q ss_pred cEEecCC
Q 019198 240 DVMVTPN 246 (344)
Q Consensus 240 dVIvt~N 246 (344)
|.|+|.|
T Consensus 191 ~aI~~~n 197 (316)
T 1tjy_A 191 DAIIAPD 197 (316)
T ss_dssp CEEEECS
T ss_pred CEEEECC
Confidence 9999998
No 67
>1r5j_A Putative phosphotransacetylase; lactate dehydrogenase-like nucleotide-binding fold, structural genomics, BSGC structure funded by NIH; 2.70A {Streptococcus pyogenes} SCOP: c.77.1.5
Probab=40.42 E-value=1.1e+02 Score=28.58 Aligned_cols=99 Identities=17% Similarity=0.074 Sum_probs=64.0
Q ss_pred eeHHHHHHHHHHHHHHHHhcC-CCceEEEeccchh-hhchH--HHHHHHHHHHhhCCCceeee-eeHhHHHHHHHh----
Q 019198 164 ITKFCSERIAKYAFEYAYLNY-RKKVTAVHKANIM-KLADG--LFLESCREVATKYPSIKYNE-IIVDNCCMQLVS---- 234 (344)
Q Consensus 164 ~Tr~~~eRiar~AFe~A~~r~-~~~Vt~v~KaNvl-k~tdg--lf~~~~~eva~eyp~I~~~~-~~vD~~~~~Lv~---- 234 (344)
.|.+...++++.+-+++++-| +-||-+..=++.- ....+ .-++.++.+.+++|++.++- +-.|++...=+.
T Consensus 183 ~t~e~l~~ia~~~~~~~~~~Gi~PrVAlLs~~~~G~e~~~~~~~i~~A~~llk~~~~~~~v~Gpl~~D~a~~~~~~~~k~ 262 (337)
T 1r5j_A 183 PTAQELAEIAVNTAETAKIFDIDPKIAMLSFSTKGSGKAPQVDKVREATEIATGLNPDLALDGELQFDAAFVPETAAIKA 262 (337)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCCCEEEECSCSTTSSCSHHHHHHHHHHHHHHHHCTTSCEEEEECHHHHHCHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCeEEEEecCccCCCCCCCcHHHHHHHHHHhccCCCcEEEecCcHHHhcCHHHHHhhC
Confidence 478889999999999998854 2456655321111 11111 24566555566889887764 467887544443
Q ss_pred --CC--CCccEEecCCcc-hhhhhhhhhhhcCC
Q 019198 235 --KP--EQFDVMVTPNLY-GNLVSNTAAGIAGG 262 (344)
Q Consensus 235 --~P--~~fdVIvt~Nlf-GDIlSDlaa~l~Gg 262 (344)
+| +++||+|++|++ |+|.-=+..-+.|.
T Consensus 263 ~~s~~~G~aDvlv~p~~d~GnI~~K~l~~~~~~ 295 (337)
T 1r5j_A 263 PDSAVAGQANTFVFPDLQSGNIGYKIAQRLGMF 295 (337)
T ss_dssp CSCSSTTCCCEEECSSHHHHHHHHHHHHHTTCC
T ss_pred CCCccCCCCCEEEECChHHHHHHHHHHHHhcCC
Confidence 22 689999999996 78877776655444
No 68
>3quf_A Extracellular solute-binding protein, family 1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Bifidobacterium longum subsp}
Probab=39.89 E-value=68 Score=29.73 Aligned_cols=57 Identities=12% Similarity=0.087 Sum_probs=40.0
Q ss_pred CCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeeeH---hHHHHHH---HhCCCCccEEecCC
Q 019198 185 RKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIV---DNCCMQL---VSKPEQFDVMVTPN 246 (344)
Q Consensus 185 ~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~v---D~~~~~L---v~~P~~fdVIvt~N 246 (344)
+..|++.+=.+ +..+.++++++.++||+|+++...+ |....+| +..-..+||+...+
T Consensus 29 ~~~l~~~~~~~-----~~~~~~~~~~f~~~~p~i~V~~~~~~~~~~~~~kl~~~~~sg~~pDv~~~~~ 91 (414)
T 3quf_A 29 KTKISFYSYFK-----DNQIGEVVKGFEKKNPDITLDVQYGQDPAQYISTLQTRLAGGKPPTIFNLTM 91 (414)
T ss_dssp CEEEEEEESSC-----HHHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHHHHSSSCCSEEEECT
T ss_pred CEEEEEEecCC-----chHHHHHHHHHHHHCcCeEEEEEeCCChHHHHHHHHHHHhCCCCCCEEEECC
Confidence 44566665322 3478889999999999999999875 4544444 34456899998765
No 69
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=39.45 E-value=1.3e+02 Score=26.21 Aligned_cols=175 Identities=14% Similarity=0.111 Sum_probs=84.7
Q ss_pred CCceEEEEEcCCCCc---HHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHH--HhcCeEEEccccCCCCCCCC
Q 019198 27 GSPRAVTLIPGDGIG---PLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSI--RKNKVCLKGGLKTPVGGGVS 101 (344)
Q Consensus 27 ~~~~~I~vi~GDGIG---pEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~--~~~da~l~G~~~~p~~~~~~ 101 (344)
+++++|+++--+--. .++...+.+.++..|..+.+. +.... ..-..+.++.+ ++.|+++..+....
T Consensus 6 ~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~-~~~~~~~~~~l~~~~vdgiIi~~~~~~------ 76 (291)
T 3egc_A 6 KRSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLA--NTAED-IVREREAVGQFFERRVDGLILAPSEGE------ 76 (291)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEE--ECTTC-HHHHHHHHHHHHHTTCSEEEECCCSSC------
T ss_pred CCCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEE--eCCCC-HHHHHHHHHHHHHCCCCEEEEeCCCCC------
Confidence 456889998555333 456667777777777655543 33211 01122334444 46888888765431
Q ss_pred chhHHHHhhcCcEEEEEEeecCCCCCCCcccccEEEEecCCceeeecccceeeCCEEEEEEEeeHHHHHHHHHHHHHHHH
Q 019198 102 SLNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAY 181 (344)
Q Consensus 102 s~~~~LR~~ldlyanvRP~~~~pg~~~~~~~vDivIvREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~ 181 (344)
.. .++ .+. ..++.+|++-....+ ++. -.+..-. ....+.|.++..
T Consensus 77 ~~--~~~-~~~-----------------~~~iPvV~~~~~~~~----------~~~-~~V~~D~----~~~g~~a~~~L~ 121 (291)
T 3egc_A 77 HD--YLR-TEL-----------------PKTFPIVAVNRELRI----------PGC-GAVLSEN----VRGARTAVEYLI 121 (291)
T ss_dssp CH--HHH-HSS-----------------CTTSCEEEESSCCCC----------TTC-EEEEECH----HHHHHHHHHHHH
T ss_pred hH--HHH-Hhh-----------------ccCCCEEEEecccCC----------CCC-CEEEECc----HHHHHHHHHHHH
Confidence 11 111 110 013445555322211 000 0111112 334556666666
Q ss_pred hcCCCceEEEeccchhhhchHHHHHHHHHHHhhCC-Cce--------eeeeeHhHHHHHHHhCCCCccEEecCC
Q 019198 182 LNYRKKVTAVHKANIMKLADGLFLESCREVATKYP-SIK--------YNEIIVDNCCMQLVSKPEQFDVMVTPN 246 (344)
Q Consensus 182 ~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp-~I~--------~~~~~vD~~~~~Lv~~P~~fdVIvt~N 246 (344)
++|.+++.++.-..-.. +.....+-|.+..+++. .+. ++..-.-.++.++++...++|.|+|.|
T Consensus 122 ~~G~~~i~~i~~~~~~~-~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~ 194 (291)
T 3egc_A 122 ARGHTRIGAIVGSAGLM-TSRERLKGFRAAMSAAGLPVRQEWIAAGGVRADNGRDGAIKVLTGADRPTALLTSS 194 (291)
T ss_dssp HTTCCSEEEECSCTTSH-HHHHHHHHHHHHHHHTTCCCCGGGEEC------CCHHHHHHHHTC-CCCSEEEESS
T ss_pred HcCCCEEEEEeCCCCCc-CHHHHHHHHHHHHHHcCCCCCHHHeEeCCCChhHHHHHHHHHHhCCCCCcEEEECC
Confidence 77888998886432111 22333444555444431 111 111122256677887778899999987
No 70
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=39.37 E-value=68 Score=24.04 Aligned_cols=55 Identities=16% Similarity=0.091 Sum_probs=41.9
Q ss_pred EEEEeeHHHHHHHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHhhCCCce
Q 019198 160 SLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIK 219 (344)
Q Consensus 160 ~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~ 219 (344)
+..=.|.+++.+.+...++-|..+|.+.|.++|=- +.|.-++.+.++-+++|.|.
T Consensus 8 DLhG~~~~eA~~~l~~fl~~a~~~g~~~v~IIHGk-----G~GvLr~~V~~~L~~~~~V~ 62 (83)
T 2zqe_A 8 DLRGLTVAEALLEVDQALEEARALGLSTLRLLHGK-----GTGALRQAIREALRRDKRVE 62 (83)
T ss_dssp ECTTCCHHHHHHHHHHHHHHHHHTTCSEEEEECCS-----TTSHHHHHHHHHHHHCTTEE
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECC-----CchHHHHHHHHHHhcCCcee
Confidence 33345788899999999999999988999999931 23566777777777778765
No 71
>3i3v_A Probable secreted solute-binding lipoprotein; transporter, PSI-II, structural genomics, protein structure initiative; 2.30A {Streptomyces coelicolor}
Probab=39.35 E-value=80 Score=29.14 Aligned_cols=61 Identities=8% Similarity=0.136 Sum_probs=40.0
Q ss_pred CCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeeeHh----HHHHHHHhCCCCccEEecC
Q 019198 185 RKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVD----NCCMQLVSKPEQFDVMVTP 245 (344)
Q Consensus 185 ~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~vD----~~~~~Lv~~P~~fdVIvt~ 245 (344)
+.+||+.+-..--......|.+++++..++||+|+++...+. .-....+..-..+||+...
T Consensus 7 ~~tl~~~~~~~~~~~~~~~~~~~~~~f~~~~p~i~V~~~~~~~~~~~kl~~~~~sg~~pDv~~~~ 71 (405)
T 3i3v_A 7 PDTLVVHTQLGTTAPGSPTYLAAVDRFREENPGVKIKNLVNGDDLAQVYETSRLARKEADVVMVN 71 (405)
T ss_dssp CCSEEEEESCSSSSTTHHHHHHHHHHHHHHSTTCCEEEEECSTTHHHHHHHHHHTTCCCSEEEEC
T ss_pred CcEEEEEeecCCCchhhHHHHHHHHHHHHHCCCcEEEEEECcHHHHHHHHHHHHCCCCCcEEEec
Confidence 567888763221111245788999999999999999888762 2223334455579999884
No 72
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=39.26 E-value=81 Score=27.55 Aligned_cols=74 Identities=14% Similarity=0.096 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHh-cCCC-ceEEEe-ccchhhhchHHHHHHHHHHH-hhCCCceeeeee------Hh---HHHHHHHhCCC
Q 019198 171 RIAKYAFEYAYL-NYRK-KVTAVH-KANIMKLADGLFLESCREVA-TKYPSIKYNEII------VD---NCCMQLVSKPE 237 (344)
Q Consensus 171 Riar~AFe~A~~-r~~~-~Vt~v~-KaNvlk~tdglf~~~~~eva-~eyp~I~~~~~~------vD---~~~~~Lv~~P~ 237 (344)
...+.|.++..+ .|.+ ++.++. ..+.. ......+-|.+.. +.+|++++.... .+ ..+.++++...
T Consensus 111 ~~g~~a~~~l~~~~g~~~~i~~i~g~~~~~--~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 188 (303)
T 3d02_A 111 KFAAEYVEHMAKRMGGKGGYVIYVGSLTVP--QHNLWADLLVKYQKEHYPDMHEVTRRMPVAESVDDSRRTTLDLMKTYP 188 (303)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEECSCSSCH--HHHHHHHHHHHHHHHHCTTEEESSSCBSCTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCcCceEEEEecCCCCc--cHHHHHHHHHHHHHhhCCCCEEEEeecCCCCCHHHHHHHHHHHHHhCC
Confidence 344555666655 5655 777664 22221 1122334444443 356776653211 12 23445555444
Q ss_pred CccEEecCC
Q 019198 238 QFDVMVTPN 246 (344)
Q Consensus 238 ~fdVIvt~N 246 (344)
++|.|+|.|
T Consensus 189 ~~~ai~~~~ 197 (303)
T 3d02_A 189 DLKAVVSFG 197 (303)
T ss_dssp TEEEEEESS
T ss_pred CCCEEEEeC
Confidence 699999988
No 73
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=38.84 E-value=1.3e+02 Score=26.65 Aligned_cols=73 Identities=8% Similarity=-0.056 Sum_probs=40.4
Q ss_pred HHHHHHHHHhc--CCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeeeH-----h---HHHHHHHhCCCCccEE
Q 019198 173 AKYAFEYAYLN--YRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIV-----D---NCCMQLVSKPEQFDVM 242 (344)
Q Consensus 173 ar~AFe~A~~r--~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~v-----D---~~~~~Lv~~P~~fdVI 242 (344)
.+.|.++..++ |.++|.++.-..-.. +.....+-|++..++ +++++..... + ..+.+|++...++|.|
T Consensus 109 g~~a~~~L~~~~~G~~~I~~i~~~~~~~-~~~~R~~gf~~~l~~-~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai 186 (313)
T 2h3h_A 109 GYTAGLIMKELLGGKGKVVIGTGSLTAM-NSLQRIQGFKDAIKD-SEIEIVDILNDEEDGARAVSLAEAALNAHPDLDAF 186 (313)
T ss_dssp HHHHHHHHHHHHTSCSEEEEEESCSSCH-HHHHHHHHHHHHHTT-SSCEEEEEEECSSCHHHHHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHHHHHcCCCCEEEEEECCCCCc-cHHHHHHHHHHHhcC-CCCEEEEeecCCCCHHHHHHHHHHHHHHCcCceEE
Confidence 34455555554 778888876431111 122344555565555 6776543321 1 3445666654579999
Q ss_pred ecCCc
Q 019198 243 VTPNL 247 (344)
Q Consensus 243 vt~Nl 247 (344)
+|.|=
T Consensus 187 ~~~~d 191 (313)
T 2h3h_A 187 FGVYA 191 (313)
T ss_dssp EECST
T ss_pred EEcCC
Confidence 99873
No 74
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=38.72 E-value=97 Score=27.80 Aligned_cols=81 Identities=10% Similarity=0.124 Sum_probs=50.5
Q ss_pred CCCceEEEEEcCC----CCcHHHHHHHHHHHHHcCCCeeEEEEEeeCC-----CCCCc---HHHHHHHHhcCeEEEcccc
Q 019198 26 DGSPRAVTLIPGD----GIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD-----MKRVP---QQVLDSIRKNKVCLKGGLK 93 (344)
Q Consensus 26 ~~~~~~I~vi~GD----GIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~-----g~~lp---~~~~~~~~~~da~l~G~~~ 93 (344)
....++|.+|-|- |....+.+++.+.++..|. +++.+++... ....| .+..+.++++|+++++.
T Consensus 31 ~~~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~--eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~s-- 106 (247)
T 2q62_A 31 STHRPRILILYGSLRTVSYSRLLAEEARRLLEFFGA--EVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVS-- 106 (247)
T ss_dssp CCSCCEEEEEECCCCSSCHHHHHHHHHHHHHHHTTC--EEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEEEE--
T ss_pred cCCCCeEEEEEccCCCCCHHHHHHHHHHHHHhhCCC--EEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEEEe--
Confidence 3356789999775 6777888888888877665 4455555432 00122 44567888999999865
Q ss_pred CCCCCCCCchhHHHHhhcCc
Q 019198 94 TPVGGGVSSLNVQLRKELDL 113 (344)
Q Consensus 94 ~p~~~~~~s~~~~LR~~ldl 113 (344)
|.. +.+.-..|..-+|.
T Consensus 107 -P~Y--n~sipa~LKn~iD~ 123 (247)
T 2q62_A 107 -PER--HGAMTGIMKAQIDW 123 (247)
T ss_dssp -ECS--SSSCCHHHHHHHHT
T ss_pred -CCC--CCCccHHHHHHHHH
Confidence 321 12334456666664
No 75
>3k01_A Acarbose/maltose binding protein GACH; ABC transporter, acarbose-binding protein, transport protein; 1.35A {Streptomyces glaucescens} PDB: 3jzj_A* 3k00_A* 3k02_A*
Probab=38.58 E-value=29 Score=32.34 Aligned_cols=60 Identities=15% Similarity=0.137 Sum_probs=42.5
Q ss_pred CCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeeeHh--HHHHHH---HhCCC-CccEEecCC
Q 019198 185 RKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVD--NCCMQL---VSKPE-QFDVMVTPN 246 (344)
Q Consensus 185 ~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~vD--~~~~~L---v~~P~-~fdVIvt~N 246 (344)
..+||+-+-.+ ......+.++++++.++||+|+++...++ ....+| +.... .+||+.+.+
T Consensus 27 ~~~l~~w~~~~--~~~~~~~~~~~~~f~~~~pgi~V~~~~~~~~~~~~kl~~~~~sg~~~pDv~~~~~ 92 (412)
T 3k01_A 27 SGTVTFWDTSN--EAEKATYQALAEGFEKEHPKVDVKYVNVPFGEANAKFKNAAGGNSGAPDVMRTEV 92 (412)
T ss_dssp CEEEEEEECCC--TTTHHHHHHHHHTHHHHCTTEEEEEEECCHHHHHHHHHHHHHTTSSCCSEEEEEH
T ss_pred CcEEEEecCCC--CcchHHHHHHHHHHHHHCcCeEEEEEecChHHHHHHHHHHHhcCCCCCCEEEecC
Confidence 45788887665 22346788999999999999999988763 333333 34555 699998743
No 76
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=38.40 E-value=77 Score=27.55 Aligned_cols=63 Identities=17% Similarity=0.240 Sum_probs=45.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHHHh-----cCeEEEccccC
Q 019198 28 SPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRK-----NKVCLKGGLKT 94 (344)
Q Consensus 28 ~~~~I~vi~GDGIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~~~-----~da~l~G~~~~ 94 (344)
.+.+|++|-|---=-++++.+.++|+.+|+++|..- +|. ...|++..+-.++ .++++-|+-+.
T Consensus 11 ~~P~V~IimGS~SD~~v~~~a~~~l~~~gi~~ev~V--~sa--HR~p~~l~~~~~~a~~~g~~ViIa~AG~a 78 (173)
T 4grd_A 11 SAPLVGVLMGSSSDWDVMKHAVAILQEFGVPYEAKV--VSA--HRMPDEMFDYAEKARERGLRAIIAGAGGA 78 (173)
T ss_dssp SSCSEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEE--CCT--TTSHHHHHHHHHHHTTTTCSEEEEEEESS
T ss_pred CCCeEEEEeCcHhHHHHHHHHHHHHHHcCCCEEEEE--Ecc--ccCHHHHHHHHHHHHhcCCeEEEEecccc
Confidence 456899998866667899999999999998744322 222 4678888777654 57787777543
No 77
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=36.90 E-value=1.9e+02 Score=24.94 Aligned_cols=74 Identities=8% Similarity=0.029 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHhhC-CCceee-----ee---eHhHHHHHHHhCCCCccEE
Q 019198 172 IAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKY-PSIKYN-----EI---IVDNCCMQLVSKPEQFDVM 242 (344)
Q Consensus 172 iar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~ey-p~I~~~-----~~---~vD~~~~~Lv~~P~~fdVI 242 (344)
..+.|.++..++|.+++.++.-..-... .....+-|.+..+++ ..+..+ .. ..-..+.++++....+|.|
T Consensus 118 ~g~~a~~~L~~~G~~~i~~i~~~~~~~~-~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai 196 (292)
T 3k4h_A 118 AAREVAEYLISLGHKQIAFIGGGSDLLV-TRDRLAGMSDALKLADIVLPKEYILHFDFSRESGQQAVEELMGLQQPPTAI 196 (292)
T ss_dssp HHHHHHHHHHHTTCCCEEEEESCTTBHH-HHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSSSCCSEE
T ss_pred HHHHHHHHHHHCCCceEEEEeCcccchh-HHHHHHHHHHHHHHcCCCCChheEEecCCCHHHHHHHHHHHHcCCCCCcEE
Confidence 4455666666678889888864322111 122334444443333 111111 11 1123566777877789999
Q ss_pred ecCC
Q 019198 243 VTPN 246 (344)
Q Consensus 243 vt~N 246 (344)
+|.|
T Consensus 197 ~~~~ 200 (292)
T 3k4h_A 197 MATD 200 (292)
T ss_dssp EESS
T ss_pred EEcC
Confidence 9987
No 78
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=36.17 E-value=1.9e+02 Score=24.87 Aligned_cols=59 Identities=0% Similarity=-0.115 Sum_probs=33.8
Q ss_pred CCceEEEEEcC---CCCcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHHHhcCeEEEcccc
Q 019198 27 GSPRAVTLIPG---DGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRKNKVCLKGGLK 93 (344)
Q Consensus 27 ~~~~~I~vi~G---DGIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~~~~da~l~G~~~ 93 (344)
+++.+|+++-- +.--.+++..+.+.++..|..+.+ ++.... .-.+.. + +.|+++..+..
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~--~~~~~~--~~~~~~---~-~vdgiI~~~~~ 67 (277)
T 3cs3_A 6 RQTNIIGVYLADYGGSFYGELLEGIKKGLALFDYEMIV--CSGKKS--HLFIPE---K-MVDGAIILDWT 67 (277)
T ss_dssp CCCCEEEEEECSSCTTTHHHHHHHHHHHHHTTTCEEEE--EESTTT--TTCCCT---T-TCSEEEEECTT
T ss_pred cCCcEEEEEecCCCChhHHHHHHHHHHHHHHCCCeEEE--EeCCCC--HHHHhh---c-cccEEEEecCC
Confidence 35678999843 334557777777777777765544 232221 111111 1 88988887643
No 79
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=35.65 E-value=1e+02 Score=26.99 Aligned_cols=74 Identities=11% Similarity=0.020 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhc--CCCceEEEeccchhhhchHHHHHHHHHHH-hhCCCceeeeeeH-----h---HHHHHHHhCCCCcc
Q 019198 172 IAKYAFEYAYLN--YRKKVTAVHKANIMKLADGLFLESCREVA-TKYPSIKYNEIIV-----D---NCCMQLVSKPEQFD 240 (344)
Q Consensus 172 iar~AFe~A~~r--~~~~Vt~v~KaNvlk~tdglf~~~~~eva-~eyp~I~~~~~~v-----D---~~~~~Lv~~P~~fd 240 (344)
..+.|.++..++ |.+++.++.-.... +.....+-|.+.. +.+++++...... + .++.++++...++|
T Consensus 112 ~g~~~~~~l~~~~~g~~~i~~i~~~~~~--~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 189 (305)
T 3g1w_A 112 AGMNAAYKMAELLDGEGEVAVITLPNQL--NHQERTTGFKETLEAEFPAIEVIAVEDGRGDSLHSRRVAHQLLEDYPNLA 189 (305)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEECTTCH--HHHHHHHHHHHHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCTTEE
T ss_pred HHHHHHHHHHHHhCCCcEEEEEeCCCcc--cHHHHHHHHHHHHHhhCCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCce
Confidence 445566666666 78888888744321 2233344455543 3567666543321 1 23556666556799
Q ss_pred EEecCCc
Q 019198 241 VMVTPNL 247 (344)
Q Consensus 241 VIvt~Nl 247 (344)
.|+|.|=
T Consensus 190 ai~~~~d 196 (305)
T 3g1w_A 190 GIFATEA 196 (305)
T ss_dssp EEEESSH
T ss_pred EEEECCC
Confidence 9999873
No 80
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=34.36 E-value=1.5e+02 Score=25.77 Aligned_cols=62 Identities=8% Similarity=0.068 Sum_probs=34.2
Q ss_pred CCceEEEEEcCC---CCcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCC-CcHHHHHHH--HhcCeEEEccc
Q 019198 27 GSPRAVTLIPGD---GIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKR-VPQQVLDSI--RKNKVCLKGGL 92 (344)
Q Consensus 27 ~~~~~I~vi~GD---GIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~-lp~~~~~~~--~~~da~l~G~~ 92 (344)
++.++|+++--+ .-..++...+.+.++..|..+.+. +... +. -..+.++.+ ++.|+++..+.
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~--~~~~--~~~~~~~~~~~l~~~~vdgiI~~~~ 73 (285)
T 3c3k_A 6 AKTGMLLVMVSNIANPFCAAVVKGIEKTAEKNGYRILLC--NTES--DLARSRSCLTLLSGKMVDGVITMDA 73 (285)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEE--ECTT--CHHHHHHHTHHHHTTCCSEEEECCC
T ss_pred CCCCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEE--eCCC--CHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 346789988433 234567777777777778666543 2211 11 011223333 46788887664
No 81
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=34.35 E-value=1.3e+02 Score=25.86 Aligned_cols=73 Identities=14% Similarity=-0.065 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhc-C-CCceEEEecc-chhhhchHHHHHHHHHHHhhCCCceeeeee----Hh---HHHHHHHhCCCCccE
Q 019198 172 IAKYAFEYAYLN-Y-RKKVTAVHKA-NIMKLADGLFLESCREVATKYPSIKYNEII----VD---NCCMQLVSKPEQFDV 241 (344)
Q Consensus 172 iar~AFe~A~~r-~-~~~Vt~v~Ka-Nvlk~tdglf~~~~~eva~eyp~I~~~~~~----vD---~~~~~Lv~~P~~fdV 241 (344)
..+.+.++..++ | .+||-++.-. +.. +.....+-+.+..++++..-.+... .+ ..+.++++....+|.
T Consensus 116 ~g~~~~~~L~~~~G~~~~i~~i~~~~~~~--~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a 193 (289)
T 3brs_A 116 AGIRIGAVTKNLVRKSGKIGVISFVKNSK--TAMDREEGLKIGLSDDSNKIEAIYYCDSNYDKAYDGTVELLTKYPDISV 193 (289)
T ss_dssp HHHHHHHHHHHHTSSSCEEEEEESCTTSH--HHHHHHHHHHHHHGGGGGGEEEEEECTTCHHHHHHHHHHHHHHCTTEEE
T ss_pred HHHHHHHHHHHHcCCCceEEEEECCCCCc--cHHHHHHHHHHHHHhCCCcEEeeecCCCCHHHHHHHHHHHHHhCCCceE
Confidence 444555666665 5 7888887532 211 1223345555555566543111111 12 234566665567999
Q ss_pred EecCC
Q 019198 242 MVTPN 246 (344)
Q Consensus 242 Ivt~N 246 (344)
|+|.|
T Consensus 194 i~~~~ 198 (289)
T 3brs_A 194 MVGLN 198 (289)
T ss_dssp EEESS
T ss_pred EEECC
Confidence 99987
No 82
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=34.11 E-value=1.2e+02 Score=26.54 Aligned_cols=74 Identities=12% Similarity=0.071 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeee----------eHhHHHHHHHhCCCCcc
Q 019198 171 RIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEI----------IVDNCCMQLVSKPEQFD 240 (344)
Q Consensus 171 Riar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~----------~vD~~~~~Lv~~P~~fd 240 (344)
...+.|.++-.++|.+++-++.-..-.. +.....+-+.+..+++ +++++.. -.-.++.++++....+|
T Consensus 113 ~~g~~a~~~L~~~G~~~I~~i~~~~~~~-~~~~R~~gf~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 190 (288)
T 3gv0_A 113 AYAYEAVERLAQCGRKRIAVIVPPSRFS-FHDHARKGFNRGIRDF-GLTEFPIDAVTIETPLEKIRDFGQRLMQSSDRPD 190 (288)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCCTTSH-HHHHHHHHHHHHHHHT-TCEECCCCSCCTTSCHHHHHHHHHHHTTSSSCCS
T ss_pred HHHHHHHHHHHHCCCCeEEEEcCCcccc-hHHHHHHHHHHHHHHc-CCCcchhheeccccchHHHHHHHHHHHhCCCCCc
Confidence 3455667777777888988885331111 1122334444444443 2222211 11246677888777899
Q ss_pred EEecCC
Q 019198 241 VMVTPN 246 (344)
Q Consensus 241 VIvt~N 246 (344)
.|+|.|
T Consensus 191 ai~~~~ 196 (288)
T 3gv0_A 191 GIVSIS 196 (288)
T ss_dssp EEEESC
T ss_pred EEEEcC
Confidence 999988
No 83
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=34.02 E-value=1.5e+02 Score=25.87 Aligned_cols=64 Identities=8% Similarity=-0.021 Sum_probs=38.7
Q ss_pred CCceEEEEEcC----C---CCcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHHH--hcCeEEEccccC
Q 019198 27 GSPRAVTLIPG----D---GIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIR--KNKVCLKGGLKT 94 (344)
Q Consensus 27 ~~~~~I~vi~G----D---GIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~~--~~da~l~G~~~~ 94 (344)
++..+|+++-- + -.-.++...+.+.++..|..+.+...+ . ..-..+.++.+. +.|+++..+...
T Consensus 4 ~~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~--~--~~~~~~~~~~l~~~~vdGiIi~~~~~ 76 (294)
T 3qk7_A 4 GRTDAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPDE--P--GEKYQSLIHLVETRRVDALIVAHTQP 76 (294)
T ss_dssp -CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEEEEEEC--T--TCCCHHHHHHHHHTCCSEEEECSCCS
T ss_pred CccceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEEEEeCC--C--hhhHHHHHHHHHcCCCCEEEEeCCCC
Confidence 34678888743 2 233567777777777778776654432 1 223445555553 689999877544
No 84
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=33.38 E-value=52 Score=28.63 Aligned_cols=75 Identities=13% Similarity=-0.009 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhcCCCceEEEeccch-hhhchHHHHHHHHHHHhhCCCceeeee--eH---hHHHHHHHhCCCCccEEec
Q 019198 171 RIAKYAFEYAYLNYRKKVTAVHKANI-MKLADGLFLESCREVATKYPSIKYNEI--IV---DNCCMQLVSKPEQFDVMVT 244 (344)
Q Consensus 171 Riar~AFe~A~~r~~~~Vt~v~KaNv-lk~tdglf~~~~~eva~eyp~I~~~~~--~v---D~~~~~Lv~~P~~fdVIvt 244 (344)
...+.|.++-.++|.+++-++.-..- .. +.....+-|.+..+++|.+.+... .- -..+.++++...++|.|+|
T Consensus 109 ~~g~~a~~~L~~~G~~~I~~i~~~~~~~~-~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~ 187 (276)
T 3jy6_A 109 EAAKAATTAFRQQGYQHVVVLTSELELSR-TRQERYRGILAAAQDVDVLEVSESSYNHSEVHQRLTQLITQNDQKTVAFA 187 (276)
T ss_dssp HHHHHHHHHHHTTTCCEEEEEEECSTTCH-HHHHHHHHHHTTCSEEEEEEECSSSCCHHHHHHHHHHHHHSSSSCEEEEE
T ss_pred HHHHHHHHHHHHcCCCeEEEEecCCCCCc-hHHHHHHHHHHHHHhCCcEEEeccccCCcHHHHHHHHHHhcCCCCcEEEE
Confidence 34566777777788889888765432 21 223445566666566664333211 11 1223445577778999999
Q ss_pred CC
Q 019198 245 PN 246 (344)
Q Consensus 245 ~N 246 (344)
.|
T Consensus 188 ~~ 189 (276)
T 3jy6_A 188 LK 189 (276)
T ss_dssp SS
T ss_pred eC
Confidence 77
No 85
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=33.25 E-value=89 Score=27.08 Aligned_cols=63 Identities=14% Similarity=0.158 Sum_probs=45.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHHHh-----cCeEEEccccC
Q 019198 28 SPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRK-----NKVCLKGGLKT 94 (344)
Q Consensus 28 ~~~~I~vi~GDGIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~~~-----~da~l~G~~~~ 94 (344)
.+..|+++-|---=-++++.+.++|+.+|+++|..-.-+ ...|++..+-.++ +++++-++-..
T Consensus 10 ~~~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv~V~Sa----HR~p~~l~~~~~~a~~~g~~ViIa~AG~a 77 (170)
T 1xmp_A 10 MKSLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSA----HRTPDYMFEYAETARERGLKVIIAGAGGA 77 (170)
T ss_dssp -CCSEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCT----TTSHHHHHHHHHHTTTTTCCEEEEEEESS
T ss_pred CCCcEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEEec----cCCHHHHHHHHHHHHhCCCcEEEEECCch
Confidence 356789998866668999999999999998844333222 4678888877764 67888777543
No 86
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=33.18 E-value=88 Score=27.95 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEe
Q 019198 166 KFCSERIAKYAFEYAYLNYRKKVTAVH 192 (344)
Q Consensus 166 r~~~eRiar~AFe~A~~r~~~~Vt~v~ 192 (344)
.+.+++.+++|.++|++. ..+|+++|
T Consensus 29 s~~s~~al~~A~~lA~~~-~a~l~ll~ 54 (309)
T 3cis_A 29 SPAAQVAVRWAARDAELR-KIPLTLVH 54 (309)
T ss_dssp SHHHHHHHHHHHHHHHHH-TCCEEEEE
T ss_pred CHHHHHHHHHHHHHHHhc-CCcEEEEE
Confidence 346789999999999987 46788887
No 87
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=32.99 E-value=1.8e+02 Score=25.05 Aligned_cols=64 Identities=9% Similarity=0.037 Sum_probs=32.9
Q ss_pred CCceEEEEEcCCC---CcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHH--HhcCeEEEcccc
Q 019198 27 GSPRAVTLIPGDG---IGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSI--RKNKVCLKGGLK 93 (344)
Q Consensus 27 ~~~~~I~vi~GDG---IGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~--~~~da~l~G~~~ 93 (344)
+++++|+++--+- -..++...+.+.++..|..+.+ .+.... ..--.+.++.+ ++.|+++..+..
T Consensus 5 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~--~~~~~~-~~~~~~~~~~l~~~~vdgii~~~~~ 73 (289)
T 1dbq_A 5 NHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLIL--GNAWNN-LEKQRAYLSMMAQKRVDGLLVMCSE 73 (289)
T ss_dssp ---CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEE--EECTTC-HHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred CCCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEE--EcCCCC-hHHHHHHHHHHHhCCCCEEEEEecc
Confidence 3467899885432 3345666777777777766554 232211 00011223333 468888876644
No 88
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE dehydrogenase, metal-binding, NAD, NADP, oxidoreductase, PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} SCOP: c.77.1.3 PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A
Probab=32.92 E-value=25 Score=33.70 Aligned_cols=21 Identities=24% Similarity=0.657 Sum_probs=17.4
Q ss_pred CceEEEEEcCC--CCcHHHHHHH
Q 019198 28 SPRAVTLIPGD--GIGPLVTNAV 48 (344)
Q Consensus 28 ~~~~I~vi~GD--GIGpEV~~~~ 48 (344)
++.+|++-.|| |||||++-.+
T Consensus 7 ~~~~iaiT~GDpaGIGpEiilka 29 (334)
T 3lxy_A 7 HNNRLVITPGEPAGVGPDLAITL 29 (334)
T ss_dssp CCSEEEEECCCTTSSHHHHHHHH
T ss_pred CCCEEEEeCCCCccchHHHHHHh
Confidence 46799999998 7999997554
No 89
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=32.82 E-value=1.3e+02 Score=23.49 Aligned_cols=57 Identities=9% Similarity=0.205 Sum_probs=42.2
Q ss_pred CceEEEEEcCCCCcHHH--HHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHHHhcCeEEEccc
Q 019198 28 SPRAVTLIPGDGIGPLV--TNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRKNKVCLKGGL 92 (344)
Q Consensus 28 ~~~~I~vi~GDGIGpEV--~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~~~~da~l~G~~ 92 (344)
.+++|.++=|-|+|-.. ....++.++..+++++.+..++.. ++.. .+++|+++.++-
T Consensus 20 ~~kkIlvvC~sG~gTS~ll~~kl~~~~~~~gi~~~V~~~~~~~----~~~~----~~~~DlIist~~ 78 (113)
T 1tvm_A 20 SKRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNE----IETY----MDGVHLICTTAR 78 (113)
T ss_dssp SSEEEEEESCSCSSHHHHHHHHHHHHHHHTTCCEEEEEECTTT----TTTS----TTSCSEEEESSC
T ss_pred cccEEEEECCCCHHHHHHHHHHHHHHHHHcCCeEEEEEecHHH----Hhhc----cCCCCEEEECCc
Confidence 46799999999999876 477778888888887776665533 2221 357899998773
No 90
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=32.81 E-value=1.8e+02 Score=25.30 Aligned_cols=73 Identities=10% Similarity=-0.043 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhcC--CCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeeeH-------hHHHHHHHhCCCCccEE
Q 019198 172 IAKYAFEYAYLNY--RKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIV-------DNCCMQLVSKPEQFDVM 242 (344)
Q Consensus 172 iar~AFe~A~~r~--~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~v-------D~~~~~Lv~~P~~fdVI 242 (344)
..+.|.++..++| .+++.++.-..-.. +.....+-|++..+++ ++++..... -.++.++++...++|.|
T Consensus 115 ~g~~a~~~l~~~g~~~~~i~~i~g~~~~~-~~~~R~~Gf~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai 192 (297)
T 3rot_A 115 AGKKLGEKALELTPSAKRALVLNPQPGHI-GLEKRAYGIKTILQDK-GIFFEELDVGTDPNQVQSRVKSYFKIHPETNII 192 (297)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEEESCTTCH-HHHHHHHHHHHHHHHT-TCEEEEEECCSCHHHHHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHHHHHhcCCCceEEEEeCCCCcH-HHHHHHHHHHHHHHhc-CCeEEEeecCCChHHHHHHHHHHHHhCCCCCEE
Confidence 4455666666666 77888875322111 1223445555555555 666544331 13345556555578999
Q ss_pred ecCC
Q 019198 243 VTPN 246 (344)
Q Consensus 243 vt~N 246 (344)
+|.|
T Consensus 193 ~~~~ 196 (297)
T 3rot_A 193 FCLT 196 (297)
T ss_dssp EESS
T ss_pred EEcC
Confidence 9988
No 91
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=32.49 E-value=97 Score=26.93 Aligned_cols=62 Identities=16% Similarity=0.186 Sum_probs=45.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHH-----HhcCeEEEccccC
Q 019198 29 PRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSI-----RKNKVCLKGGLKT 94 (344)
Q Consensus 29 ~~~I~vi~GDGIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~-----~~~da~l~G~~~~ 94 (344)
+.+|+++-|---=-++++.+.++|+.+|+++|..-.-+ ...|++..+-+ +.+++++-++-..
T Consensus 7 ~~~V~IimgS~SD~~v~~~a~~~L~~~gi~~ev~V~Sa----HR~p~~~~~~~~~a~~~g~~ViIa~AG~a 73 (174)
T 3lp6_A 7 RPRVGVIMGSDSDWPVMADAAAALAEFDIPAEVRVVSA----HRTPEAMFSYARGAAARGLEVIIAGAGGA 73 (174)
T ss_dssp CCSEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECCT----TTCHHHHHHHHHHHHHHTCCEEEEEEESS
T ss_pred CCeEEEEECcHHhHHHHHHHHHHHHHcCCCEEEEEECC----CCCHHHHHHHHHHHHhCCCCEEEEecCch
Confidence 45799998866668999999999999998854433222 45777777665 4578888877543
No 92
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=32.38 E-value=1e+02 Score=26.54 Aligned_cols=62 Identities=11% Similarity=0.151 Sum_probs=45.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHHH-----hcCeEEEccccC
Q 019198 29 PRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIR-----KNKVCLKGGLKT 94 (344)
Q Consensus 29 ~~~I~vi~GDGIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~~-----~~da~l~G~~~~ 94 (344)
+.+|+++-|---=-++++++.++|+.+|++.|..-.-+ ...|++..+-.+ .+++++-++-..
T Consensus 3 ~~~V~Iimgs~SD~~v~~~a~~~l~~~gi~~ev~V~Sa----HR~p~~~~~~~~~a~~~g~~ViIa~AG~a 69 (163)
T 3ors_A 3 AMKVAVIMGSSSDWKIMQESCNMLDYFEIPYEKQVVSA----HRTPKMMVQFASEARERGINIIIAGAGGA 69 (163)
T ss_dssp CCCEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECCT----TTSHHHHHHHHHHTTTTTCCEEEEEEESS
T ss_pred CCeEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEECC----cCCHHHHHHHHHHHHhCCCcEEEEECCch
Confidence 35688888766668999999999999998854433222 467888877765 378888877544
No 93
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=31.63 E-value=2.3e+02 Score=24.84 Aligned_cols=63 Identities=8% Similarity=0.076 Sum_probs=37.6
Q ss_pred ceEEEEEcC---CCCcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHH--HhcCeEEEccccC
Q 019198 29 PRAVTLIPG---DGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSI--RKNKVCLKGGLKT 94 (344)
Q Consensus 29 ~~~I~vi~G---DGIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~--~~~da~l~G~~~~ 94 (344)
+++|+++-- +---.++...+.+.++..|..+.+.. .... ..-..+.++.+ ++.|+++..|...
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~--~~~~-~~~~~~~i~~l~~~~vdgiIi~~~~~ 69 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQS--ANGN-EETQMSQIENMINRGVDVLVIIPYNG 69 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEE--CTTC-HHHHHHHHHHHHHTTCSEEEEECSST
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEC--CCCC-HHHHHHHHHHHHHcCCCEEEEeCCCh
Confidence 467888733 44667888888888888887665532 2111 01112334433 4689999877644
No 94
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=31.56 E-value=2.5e+02 Score=24.10 Aligned_cols=153 Identities=11% Similarity=0.019 Sum_probs=76.4
Q ss_pred cCCCeeEEEEEeeCCCCCCcHHHHHHHHhcCeEEEccccCC-CCCC--CCchhHHHHhhcCcEEEEEEeecCCCCCCCcc
Q 019198 55 MHAPIYFEKYEVHGDMKRVPQQVLDSIRKNKVCLKGGLKTP-VGGG--VSSLNVQLRKELDLYAALVNCFNLPGLPTRHQ 131 (344)
Q Consensus 55 ~~~~i~~~~~~~g~~g~~lp~~~~~~~~~~da~l~G~~~~p-~~~~--~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~~ 131 (344)
.++++++... .| + ..++.++.-.++|.+++|.-+.. .... ..|....+=+. .
T Consensus 86 ~g~~~~~~~~-~g---~-~~~~I~~~~~~~dliV~G~~g~~~~~~~~~~Gs~~~~v~~~--------------------a 140 (268)
T 3ab8_A 86 AGVAVEAVLE-EG---V-PHEAILRRARAADLLVLGRSGEAHGDGFGGLGSTADRVLRA--------------------S 140 (268)
T ss_dssp TTCCEEEEEE-EE---C-HHHHHHHHHTTCSEEEEESSCTTSCTTCCSCCHHHHHHHHH--------------------C
T ss_pred CCCCeEEEEe-cC---C-HHHHHHhhccCCCEEEEeccCCCccccccccchhHHHHHHh--------------------C
Confidence 4777766532 33 2 23344444567999999987643 2111 11221111111 1
Q ss_pred cccEEEEecCCceeeecccceeeCCEEEEEEEeeHHHHHHHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHH
Q 019198 132 NVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREV 211 (344)
Q Consensus 132 ~vDivIvREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~ev 211 (344)
+.++++||+... .| ..+.+.+. -...+++.+++|+++|+..+ .+|+++|=..--........+....+
T Consensus 141 ~~PVlvv~~~~~-~~--------~~ilv~~d--~s~~~~~al~~a~~la~~~~-a~l~ll~v~~~~~~~~~~l~~~~~~l 208 (268)
T 3ab8_A 141 PVPVLLAPGEPV-EL--------EGALLGYD--ASESAVRALHALAPLARALG-LGVRVVSVHEDPARAEAWALEAEAYL 208 (268)
T ss_dssp SSCEEEECSSCC-CC--------CEEEEECC--SCHHHHHHHHHHHHHHHHHT-CCEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCC-CC--------CEEEEEEC--CCHHHHHHHHHHHHhhhcCC-CEEEEEEEcCcHHHHHHHHHHHHHHH
Confidence 366777776533 11 11222222 24567889999999999874 56888873322111122233333333
Q ss_pred HhhCCCceeeeee-HhHHHHHHHhCCCCccEEecCC
Q 019198 212 ATKYPSIKYNEII-VDNCCMQLVSKPEQFDVMVTPN 246 (344)
Q Consensus 212 a~eyp~I~~~~~~-vD~~~~~Lv~~P~~fdVIvt~N 246 (344)
.+ .+++++... -.+....|+.--.+.|.||+..
T Consensus 209 ~~--~~~~~~~~~~~g~~~~~i~~~a~~~dliV~G~ 242 (268)
T 3ab8_A 209 RD--HGVEASALVLGGDAADHLLRLQGPGDLLALGA 242 (268)
T ss_dssp HH--TTCCEEEEEECSCHHHHHHHHCCTTEEEEEEC
T ss_pred HH--cCCceEEEEeCCChHHHHHHHHHhCCEEEECC
Confidence 22 255555442 2334444444333339888776
No 95
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=31.52 E-value=1.6e+02 Score=25.71 Aligned_cols=169 Identities=9% Similarity=0.032 Sum_probs=83.6
Q ss_pred CceEEEEEcCCCCc---HHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHH--HhcCeEEEccccCCCCCCCCc
Q 019198 28 SPRAVTLIPGDGIG---PLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSI--RKNKVCLKGGLKTPVGGGVSS 102 (344)
Q Consensus 28 ~~~~I~vi~GDGIG---pEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~--~~~da~l~G~~~~p~~~~~~s 102 (344)
+.++|+++- |--. .++...+.+.++..|..+.+.. .... .. ..+.++.+ ++.|+++..|...+. .
T Consensus 11 ~~~~Igvi~-~~~~~~~~~~~~gi~~~a~~~g~~~~~~~--~~~~-~~-~~~~~~~l~~~~vdgiIi~~~~~~~-----~ 80 (289)
T 3k9c_A 11 SSRLLGVVF-ELQQPFHGDLVEQIYAAATRRGYDVMLSA--VAPS-RA-EKVAVQALMRERCEAAILLGTRFDT-----D 80 (289)
T ss_dssp --CEEEEEE-ETTCHHHHHHHHHHHHHHHHTTCEEEEEE--EBTT-BC-HHHHHHHHTTTTEEEEEEETCCCCH-----H
T ss_pred CCCEEEEEE-ecCCchHHHHHHHHHHHHHHCCCEEEEEe--CCCC-HH-HHHHHHHHHhCCCCEEEEECCCCCH-----H
Confidence 468899998 5433 3566666666666676655533 2221 12 45556655 467888877654321 1
Q ss_pred hhHHHHhhcCcEEEEEEeecCCCCCCCcccccEEEEecCCceeeecccceeeCCEEEEEEEeeHHHHHHHHHHHHHHHHh
Q 019198 103 LNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYL 182 (344)
Q Consensus 103 ~~~~LR~~ldlyanvRP~~~~pg~~~~~~~vDivIvREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~~ 182 (344)
....+++ + +.+|++-...++ ++.. .+..-. ....+.|.++-.+
T Consensus 81 ~~~~~~~--~--------------------iPvV~i~~~~~~----------~~~~-~V~~D~----~~~~~~a~~~L~~ 123 (289)
T 3k9c_A 81 ELGALAD--R--------------------VPALVVARASGL----------PGVG-AVRGDD----VAGITLAVDHLTE 123 (289)
T ss_dssp HHHHHHT--T--------------------SCEEEESSCCSS----------TTSE-EEEECH----HHHHHHHHHHHHH
T ss_pred HHHHHHc--C--------------------CCEEEEcCCCCC----------CCCC-EEEeCh----HHHHHHHHHHHHH
Confidence 1111211 2 223333211110 0000 111111 2345566666667
Q ss_pred cCCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeee------eeH---hHHHHHHHhCCCCccEEecCC
Q 019198 183 NYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNE------IIV---DNCCMQLVSKPEQFDVMVTPN 246 (344)
Q Consensus 183 r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~------~~v---D~~~~~Lv~~P~~fdVIvt~N 246 (344)
+|.+++-++.-..-. +.....+-|.+..+++. +.++. ... -.++.++++...++|.|+|.|
T Consensus 124 ~G~~~I~~i~~~~~~--~~~~R~~Gf~~al~~~g-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~ 193 (289)
T 3k9c_A 124 LGHRNIAHIDGADAP--GGADRRAGFLAAMDRHG-LSASATVVTGGTTETEGAEGMHTLLEMPTPPTAVVAFN 193 (289)
T ss_dssp TTCCSEEEECCTTST--THHHHHHHHHHHHHHTT-CGGGEEEECCCSSHHHHHHHHHHHHTSSSCCSEEEESS
T ss_pred CCCCcEEEEeCCCCc--cHHHHHHHHHHHHHHCC-CCCCccEEECCCCHHHHHHHHHHHHcCCCCCCEEEECC
Confidence 788898888654322 22334445555444432 22111 111 235667778777899999987
No 96
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=31.44 E-value=97 Score=27.10 Aligned_cols=61 Identities=15% Similarity=0.174 Sum_probs=45.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHHHh-----cCeEEEccccC
Q 019198 30 RAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRK-----NKVCLKGGLKT 94 (344)
Q Consensus 30 ~~I~vi~GDGIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~~~-----~da~l~G~~~~ 94 (344)
..|++|-|---=-++++.+.++|+.+|+++|..-.-+ ...|++..+-+++ .++++-|+-+.
T Consensus 23 p~V~IimGS~SD~~v~~~a~~~L~~~gI~~e~~V~SA----HRtp~~l~~~~~~a~~~g~~ViIa~AG~a 88 (181)
T 4b4k_A 23 SLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSA----HRTPDYMFEYAETARERGLKVIIAGAGGA 88 (181)
T ss_dssp CSEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCT----TTSHHHHHHHHHHTTTTTCCEEEEEECSS
T ss_pred ccEEEEECCHhHHHHHHHHHHHHHHcCCCeeEEEEcc----ccChHHHHHHHHHHHhcCceEEEEecccc
Confidence 4599998876667899999999999997755443333 4678888877765 46888877544
No 97
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=31.35 E-value=1.6e+02 Score=26.58 Aligned_cols=75 Identities=5% Similarity=-0.033 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceee--e------eeHh---HHHHHHHhCCCCc
Q 019198 171 RIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYN--E------IIVD---NCCMQLVSKPEQF 239 (344)
Q Consensus 171 Riar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~--~------~~vD---~~~~~Lv~~P~~f 239 (344)
.-.+.|.++-.++|.+++-++.-..-.........+-|.+..+++ +++++ . .-.+ .++.+|++.+.++
T Consensus 173 ~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~R~~Gf~~al~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 251 (355)
T 3e3m_A 173 RAAYDMTNALLARGFRKIVFLGEKDDDWTRGAARRAGFKRAMREA-GLNPDQEIRLGAPPLSIEDGVAAAELILQEYPDT 251 (355)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEEESSCTTSHHHHHHHHHHHHHHHT-TSCSCCEEEESCSSCCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHCCCCeEEEEccCcccChhHHHHHHHHHHHHHHC-CcCCCccEEEecCCCCHHHHHHHHHHHHcCCCCC
Confidence 345566666677788888877542111110122333344433333 11111 1 1112 4556777776789
Q ss_pred cEEecCC
Q 019198 240 DVMVTPN 246 (344)
Q Consensus 240 dVIvt~N 246 (344)
|.|+|.|
T Consensus 252 ~ai~~~n 258 (355)
T 3e3m_A 252 DCIFCVS 258 (355)
T ss_dssp CEEEESS
T ss_pred cEEEECC
Confidence 9999988
No 98
>3uor_A ABC transporter sugar binding protein; ALFA/beta protein, periplasmic-binding protein, maltose, SUG binding protein; 2.20A {Xanthomonas axonopodis PV}
Probab=31.31 E-value=80 Score=30.05 Aligned_cols=58 Identities=14% Similarity=0.102 Sum_probs=39.4
Q ss_pred CCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeeeHh--HHHHHH---HhCCCCccEEecCC
Q 019198 185 RKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVD--NCCMQL---VSKPEQFDVMVTPN 246 (344)
Q Consensus 185 ~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~vD--~~~~~L---v~~P~~fdVIvt~N 246 (344)
+.+||+-+-.+ ....+.+++.++.++||+|+++...++ ....+| +..-..+||+...+
T Consensus 29 ~~tlt~w~~~~----~~~~~~~~~~~F~~~~pgi~V~~~~~~~~~~~~kl~~~~~sg~~pDv~~~~~ 91 (458)
T 3uor_A 29 KTTVRFWAMGK----EAEVVAELVADFEKQNPTIHVDVQNIPMTAAHEKLLTAFAADGLPDVCQLGN 91 (458)
T ss_dssp CEEEEEEECTH----HHHHHHHHHHHHHTTCTTEEEEEEECCHHHHHHHHHHHHHTTCCCSEEEEET
T ss_pred CeEEEEEecCC----cHHHHHHHHHHHHHHCCCcEEEEEEcChHHHHHHHHHHHhCCCCCCEEEECc
Confidence 45677765322 235788899999999999999988763 333333 33445799998765
No 99
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=31.05 E-value=2.3e+02 Score=24.28 Aligned_cols=63 Identities=6% Similarity=-0.041 Sum_probs=34.7
Q ss_pred CCceEEEEEcCC-----CCcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCC-CcHHHHHHH--HhcCeEEEcccc
Q 019198 27 GSPRAVTLIPGD-----GIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKR-VPQQVLDSI--RKNKVCLKGGLK 93 (344)
Q Consensus 27 ~~~~~I~vi~GD-----GIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~-lp~~~~~~~--~~~da~l~G~~~ 93 (344)
+++.+|+++-.+ --..++...+.+.++..|..+.+ ++... ++ --.+.++.+ ++.|+++..+..
T Consensus 17 ~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~--~~~~~--~~~~~~~~~~~l~~~~vdgii~~~~~ 87 (296)
T 3brq_A 17 KSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLL--ADGKH--SAEEERQAIQYLLDLRCDAIMIYPRF 87 (296)
T ss_dssp --CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEE--ECCTT--SHHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred CCCceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEE--EeCCC--CHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 346789988433 34567888888888877765543 22211 11 011233333 468888876643
No 100
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=30.34 E-value=1.4e+02 Score=25.90 Aligned_cols=63 Identities=6% Similarity=-0.140 Sum_probs=37.1
Q ss_pred CceEEEEEcCC-------CCcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHH--HhcCeEEEcccc
Q 019198 28 SPRAVTLIPGD-------GIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSI--RKNKVCLKGGLK 93 (344)
Q Consensus 28 ~~~~I~vi~GD-------GIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~--~~~da~l~G~~~ 93 (344)
++.+|+++--+ .--.++...+.+.++..|..+.+. +... ...-..+.++.+ ++.|+++..+..
T Consensus 3 ~s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~-~~~~~~~~~~~l~~~~vdgiIi~~~~ 74 (287)
T 3bbl_A 3 LSFMIGYSWTQTEPGQVNHILDQFLSSMVREAGAVNYFVLPF--PFSE-DRSQIDIYRDLIRSGNVDGFVLSSIN 74 (287)
T ss_dssp CCCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHTTCEEEEC--CCCS-STTCCHHHHHHHHTTCCSEEEECSCC
T ss_pred ceeEEEEEecccccccCChhHHHHHHHHHHHHHHcCCEEEEE--eCCC-chHHHHHHHHHHHcCCCCEEEEeecC
Confidence 35788888433 345678888888888888665442 2211 112233445554 468888887643
No 101
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=30.24 E-value=1.4e+02 Score=25.58 Aligned_cols=168 Identities=8% Similarity=-0.046 Sum_probs=82.0
Q ss_pred CCceEEEEEcCC---CCcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHH--HhcCeEEEccccCCCCCCCC
Q 019198 27 GSPRAVTLIPGD---GIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSI--RKNKVCLKGGLKTPVGGGVS 101 (344)
Q Consensus 27 ~~~~~I~vi~GD---GIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~--~~~da~l~G~~~~p~~~~~~ 101 (344)
+++++|+++--+ .--.++...+.+.++..|..+.+...+ .. .-..+.++.+ ++.|+++ -+.....
T Consensus 3 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~---~~~~~~~~~l~~~~vdgiI-~~~~~~~----- 72 (280)
T 3gyb_A 3 LRTQLIAVLIDDYSNPWFIDLIQSLSDVLTPKGYRLSVIDSL-TS---QAGTDPITSALSMRPDGII-IAQDIPD----- 72 (280)
T ss_dssp -CCCEEEEEESCTTSGGGHHHHHHHHHHHGGGTCEEEEECSS-SS---CSSSCHHHHHHTTCCSEEE-EESCC-------
T ss_pred CccCEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEEEeCC-Cc---hHHHHHHHHHHhCCCCEEE-ecCCCCh-----
Confidence 346789988533 244667777777777777666554433 11 1123344444 4788888 4332210
Q ss_pred chhHHHHhhcCcEEEEEEeecCCCCCCCcccccEEEEecCC-ceeeecccceeeCCEEEEEEEeeHHHHHHHHHHHHHHH
Q 019198 102 SLNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIRENT-EGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYA 180 (344)
Q Consensus 102 s~~~~LR~~ldlyanvRP~~~~pg~~~~~~~vDivIvREnt-eG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A 180 (344)
..+.+ .++.+|++-... ++.. . + .+..- -....+.|.++.
T Consensus 73 ---~~~~~---------------------~~iPvV~~~~~~~~~~~--~-----~----~V~~D----~~~~g~~a~~~L 113 (280)
T 3gyb_A 73 ---FTVPD---------------------SLPPFVIAGTRITQAST--H-----D----SVAND----DFRGAEIATKHL 113 (280)
T ss_dssp ------------------------------CCCEEEESCCCSSSCS--T-----T----EEEEC----HHHHHHHHHHHH
T ss_pred ---hhHhh---------------------cCCCEEEECCCCCCCCC--C-----C----EEEec----hHHHHHHHHHHH
Confidence 01111 134444442221 1100 0 0 11111 233455666666
Q ss_pred HhcCCCceEEEeccchhhhchHHHHHHHHHHHhhC-CCceeee-------eeHhHHHHHHHhCCCCccEEecCC
Q 019198 181 YLNYRKKVTAVHKANIMKLADGLFLESCREVATKY-PSIKYNE-------IIVDNCCMQLVSKPEQFDVMVTPN 246 (344)
Q Consensus 181 ~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~ey-p~I~~~~-------~~vD~~~~~Lv~~P~~fdVIvt~N 246 (344)
.++|.+++.++.-..-. .....+-|.+..+++ ..+.... .-.-.++.++++....+|.|+|.|
T Consensus 114 ~~~G~~~i~~i~~~~~~---~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~ 184 (280)
T 3gyb_A 114 IDLGHTHIAHLRVGSGA---GLRRFESFEATMRAHGLEPLSNDYLGPAVEHAGYTETLALLKEHPEVTAIFSSN 184 (280)
T ss_dssp HHTTCCSEEEECCSSHH---HHHHHHHHHHHHHHTTCCCEECCCCSCCCHHHHHHHHHHHHHHCTTCCEEEESS
T ss_pred HHCCCCeEEEEeCCCch---HHHHHHHHHHHHHHcCcCCCcccccCCCCHHHHHHHHHHHHhCCCCCCEEEECC
Confidence 67788898888754322 122334444443333 1221111 112234566777667899999987
No 102
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=29.83 E-value=2.7e+02 Score=24.08 Aligned_cols=72 Identities=10% Similarity=-0.059 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcCCCceEEEecc-chhhhchHHHHHHHHHHHhhCCCceeeeee-----Hh---HHHHHHHhCCCCccEE
Q 019198 172 IAKYAFEYAYLNYRKKVTAVHKA-NIMKLADGLFLESCREVATKYPSIKYNEII-----VD---NCCMQLVSKPEQFDVM 242 (344)
Q Consensus 172 iar~AFe~A~~r~~~~Vt~v~Ka-Nvlk~tdglf~~~~~eva~eyp~I~~~~~~-----vD---~~~~~Lv~~P~~fdVI 242 (344)
..+.|.++-.++|.+++.++.-. +.. +.....+-|.+..++++ ++.+..+ .+ .++.+|++....+|.|
T Consensus 125 ~~~~a~~~L~~~G~~~I~~i~~~~~~~--~~~~R~~Gf~~~l~~~g-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai 201 (293)
T 2iks_A 125 DAEMLAEELRKFPAETVLYLGALPELS--VSFLREQGFRTAWKDDP-REVHFLYANSYEREAAAQLFEKWLETHPMPQAL 201 (293)
T ss_dssp HHHHHHHHHHTSCCSSEEEEEECTTSH--HHHHHHHHHHHHHTTCC-CCEEEEEESSSCHHHHHHHHHHHTTTSCCCSEE
T ss_pred HHHHHHHHHHHCCCCEEEEEecCcccc--cHHHHHHHHHHHHHHcC-CCccEEEcCCCChhhHHHHHHHHHhcCCCCCEE
Confidence 34456666666788888877532 211 12233455555555554 2222111 11 3456777777789999
Q ss_pred ecCC
Q 019198 243 VTPN 246 (344)
Q Consensus 243 vt~N 246 (344)
+|.|
T Consensus 202 ~~~~ 205 (293)
T 2iks_A 202 FTTS 205 (293)
T ss_dssp EESS
T ss_pred EECC
Confidence 9987
No 103
>1elj_A Maltodextrin-binding protein; protein-carbohydrate complex, maltose binding protein, MBP fold, ABC transporter fold, thermophilic protein; HET: CME GLC; 1.85A {Pyrococcus furiosus} SCOP: c.94.1.1
Probab=29.15 E-value=60 Score=29.85 Aligned_cols=44 Identities=14% Similarity=0.051 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhhCCCceeeeeeHhHHHHHHHh---CCCCccEEecC
Q 019198 202 GLFLESCREVATKYPSIKYNEIIVDNCCMQLVS---KPEQFDVMVTP 245 (344)
Q Consensus 202 glf~~~~~eva~eyp~I~~~~~~vD~~~~~Lv~---~P~~fdVIvt~ 245 (344)
..+.+++++..++||+|+++...++....+|.+ .-..+||+...
T Consensus 20 ~~~~~~i~~F~~~~p~i~V~~~~~~~~~~kl~~~~~~g~~PDv~~~~ 66 (381)
T 1elj_A 20 EVFQSLAEEYMALCPEVEIVFEQKPNLEDALKAAIPTGQGPDLFIWA 66 (381)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEECTTHHHHHHHHTTTTCSCSEEEEE
T ss_pred HHHHHHHHHHHHHCCCcEEEEEECCcHHHHHHHHHhcCCCCcEEEeC
Confidence 467788888888999999998887755555543 33468987654
No 104
>3qd7_X Uncharacterized protein YDAL; alpha/beta/alpha fold, endonuclease, hydrolase; 2.30A {Escherichia coli}
Probab=28.99 E-value=1.5e+02 Score=24.46 Aligned_cols=62 Identities=11% Similarity=0.011 Sum_probs=44.3
Q ss_pred EEEEEeeHHHHHHHHHHHHHHHHhcCCCceEEEe-ccchhhhchHHHHHHHHHHHhhCCCcee
Q 019198 159 ESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVH-KANIMKLADGLFLESCREVATKYPSIKY 220 (344)
Q Consensus 159 ~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~-KaNvlk~tdglf~~~~~eva~eyp~I~~ 220 (344)
++..=.|.+++...+...+.-|..+|.+.|.++| |.+-.+...+.-++.+.++-+++|.|.-
T Consensus 50 LDLHG~~~~EA~~~L~~fL~~a~~~g~r~V~IIHGKG~gs~~~~~vLk~~V~~wL~~~~~V~~ 112 (137)
T 3qd7_X 50 LNLLRQPVEECRKMVFSFIQQALADGLRNVLIIHGKGRDDKSHANIVRSYVARWLTEFDDVQA 112 (137)
T ss_dssp EECTTCCHHHHHHHHHHHHHHHHHTTCSEEEEECCCCSSTTSHHHHHHHHHHHHHHTSTTEEE
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCchHHHHHHHHHHHhcCCceeE
Confidence 4555578899999999999999999888999998 4442221223566777777667787653
No 105
>3tsn_A 4-hydroxythreonine-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: UNL; 2.63A {Campylobacter jejuni subsp}
Probab=28.86 E-value=36 Score=33.02 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=17.0
Q ss_pred ceEEEEEcCC--CCcHHHHHHH
Q 019198 29 PRAVTLIPGD--GIGPLVTNAV 48 (344)
Q Consensus 29 ~~~I~vi~GD--GIGpEV~~~~ 48 (344)
+.+|++-.|| ||||||+-.+
T Consensus 4 ~~~iaIT~GDpaGIGpEI~~ka 25 (367)
T 3tsn_A 4 MKKLAISIGDINSIGLEILVRS 25 (367)
T ss_dssp CCEEEEECCCTTTTHHHHHHHH
T ss_pred CCEEEEeCCCCccchHHHHHHh
Confidence 4689999999 8999998765
No 106
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=28.82 E-value=1.2e+02 Score=26.54 Aligned_cols=62 Identities=16% Similarity=0.182 Sum_probs=45.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHHHh-----cCeEEEccccC
Q 019198 29 PRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRK-----NKVCLKGGLKT 94 (344)
Q Consensus 29 ~~~I~vi~GDGIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~~~-----~da~l~G~~~~ 94 (344)
+.+|++|-|---=-++++.+.++|+.+|+++|..-.-+ ...|++..+-.++ +++++-++-..
T Consensus 21 ~~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv~V~Sa----HR~p~~l~~~~~~a~~~g~~ViIa~AG~a 87 (182)
T 1u11_A 21 APVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSA----HRTPDRLADYARTAAERGLNVIIAGAGGA 87 (182)
T ss_dssp CCSEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCT----TTCHHHHHHHHHHTTTTTCCEEEEEEESS
T ss_pred CCEEEEEECcHHHHHHHHHHHHHHHHcCCCeEEEEEcc----cCCHHHHHHHHHHHHhCCCcEEEEecCch
Confidence 45799998866668999999999999998844333222 4678888877764 67888777544
No 107
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=28.71 E-value=1.4e+02 Score=25.79 Aligned_cols=172 Identities=10% Similarity=0.027 Sum_probs=84.8
Q ss_pred CCceEEEEE-cCC---CCcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHH--HhcCeEEEccccCCCCCCC
Q 019198 27 GSPRAVTLI-PGD---GIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSI--RKNKVCLKGGLKTPVGGGV 100 (344)
Q Consensus 27 ~~~~~I~vi-~GD---GIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~--~~~da~l~G~~~~p~~~~~ 100 (344)
+++++|+++ |.+ .--.++.....+.++..|..+.+...+...+. ..+.++.+ ++.|+++..+...+
T Consensus 9 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~---~~~~~~~l~~~~vdgiIi~~~~~~----- 80 (289)
T 3g85_A 9 QSKPTIALYWSSDISVNIISRFLRGLQSKLAKQNYNYNVVICPYKTDC---LHLEKGISKENSFDAAIIANISNY----- 80 (289)
T ss_dssp --CCEEEEEEETTSCGGGHHHHHHHHHHHHHHTTTCSEEEEEEECTTC---GGGCGGGSTTTCCSEEEESSCCHH-----
T ss_pred CCCceEEEEeccccchHHHHHHHHHHHHHHHHcCCeEEEEecCCCchh---HHHHHHHHhccCCCEEEEecCCcc-----
Confidence 356889988 533 23456777777777777888776554432221 12222322 46888888764321
Q ss_pred CchhHHHHhhcCcEEEEEEeecCCCCCCCcccccEEEEecCCceeeecccceeeCCEEEEEEEeeHHHHHHHHHHHHHHH
Q 019198 101 SSLNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYA 180 (344)
Q Consensus 101 ~s~~~~LR~~ldlyanvRP~~~~pg~~~~~~~vDivIvREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A 180 (344)
...+.+..+ .++.+|++-...++. . .+..-. ....+.|.++-
T Consensus 81 ---~~~~~~~~~------------------~~iPvV~~~~~~~~~------------~-~V~~D~----~~~~~~a~~~L 122 (289)
T 3g85_A 81 ---DLEYLNKAS------------------LTLPIILFNRLSNKY------------S-SVNVDN----YKMGEKASLLF 122 (289)
T ss_dssp ---HHHHHHHCC------------------CSSCEEEESCCCSSS------------E-EEEECH----HHHHHHHHHHH
T ss_pred ---cHHHHHhcc------------------CCCCEEEECCCCCCC------------C-EEEeCH----HHHHHHHHHHH
Confidence 112222211 134444442211110 0 111112 23445566666
Q ss_pred HhcCCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceee-------eee---HhHHHHHHHhCCCCccEEecCC
Q 019198 181 YLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYN-------EII---VDNCCMQLVSKPEQFDVMVTPN 246 (344)
Q Consensus 181 ~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~-------~~~---vD~~~~~Lv~~P~~fdVIvt~N 246 (344)
.++|.+++-++.-..-.. +.....+-+.+..+++ +++++ ... .-.++.++++....+|.|+|.|
T Consensus 123 ~~~G~~~i~~i~~~~~~~-~~~~R~~gf~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~ 196 (289)
T 3g85_A 123 AKKRYKSAAAILTESLND-AMDNRNKGFIETCHKN-GIKISENHIIAAENSIHGGVDAAKKLMKLKNTPKALFCNS 196 (289)
T ss_dssp HHTTCCBCEEEECCCSSH-HHHHHHHHHHHHHHHT-TCBCCGGGEEECCSSHHHHHHHHHHHTTSSSCCSEEEESS
T ss_pred HHcCCCEEEEEeCCcccc-cHHHHHHHHHHHHHHc-CCCCChhheeccCCCHHHHHHHHHHHHcCCCCCcEEEEcC
Confidence 677888888876431111 1122233444443333 12211 111 1235677788777899999987
No 108
>3c9h_A ABC transporter, substrate binding protein; structural genom MCSG, PSI-2, protein structure initiative; HET: CIT; 1.90A {Agrobacterium tumefaciens str}
Probab=28.54 E-value=65 Score=29.40 Aligned_cols=57 Identities=9% Similarity=0.036 Sum_probs=37.6
Q ss_pred CCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeeeHhH--HHHHHHhC----CCCccEEecCC
Q 019198 185 RKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDN--CCMQLVSK----PEQFDVMVTPN 246 (344)
Q Consensus 185 ~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~vD~--~~~~Lv~~----P~~fdVIvt~N 246 (344)
..+|++.+=. +...+.++++++.++||+|+++....+. ...+|... -..+||+...+
T Consensus 33 ~~~L~v~~~~-----~~~~~~~~~~~Fe~~~Pgi~V~~~~~~~~~~~~kl~~~~~ag~~~~DV~~~~~ 95 (355)
T 3c9h_A 33 AQTLVVYSSL-----DEPLATPMIEGFQKANPDIAVHYEDMLTGEIYDRIVKETDAGKKTADFAFSSA 95 (355)
T ss_dssp -CEEEEEECS-----CHHHHHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHHHHTTCCBCSEEEESC
T ss_pred CCEEEEEeCC-----CHHHHHHHHHHHHHHCcCeEEEEEeCChHHHHHHHHHHHhcCCCCCCEEEecc
Confidence 3567776522 1246788888888899999998877643 44555432 24689988765
No 109
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=27.83 E-value=2e+02 Score=25.30 Aligned_cols=67 Identities=18% Similarity=0.055 Sum_probs=40.2
Q ss_pred HHHHHHHHhc--CCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeeeHh------HHHHHHHhCCCCccEEecC
Q 019198 174 KYAFEYAYLN--YRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVD------NCCMQLVSKPEQFDVMVTP 245 (344)
Q Consensus 174 r~AFe~A~~r--~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~vD------~~~~~Lv~~P~~fdVIvt~ 245 (344)
+.++++..+. |.+|+-++.-..-. +.....+-+++..+++ ++++....+. .++.+|. .++|.|++.
T Consensus 127 ~~~~~~l~~~~Pg~~~I~~i~~~~~~--~~~~r~~g~~~al~~~-gi~~~~~~~~~~~~~~~~~~~l~---~~~dai~~~ 200 (302)
T 2qh8_A 127 EQHVELIKEILPNVKSIGVVYNPGEA--NAVSLMELLKLSAAKH-GIKLVEATALKSADVQSATQAIA---EKSDVIYAL 200 (302)
T ss_dssp HHHHHHHHHHSTTCCEEEEEECTTCH--HHHHHHHHHHHHHHHT-TCEEEEEECSSGGGHHHHHHHHG---GGCSEEEEC
T ss_pred HHHHHHHHHhCCCCcEEEEEecCCCc--chHHHHHHHHHHHHHc-CCEEEEEecCChHHHHHHHHHHh---ccCCEEEEC
Confidence 4566777776 78899888644321 1122335555655665 6776665442 3445554 267899998
Q ss_pred C
Q 019198 246 N 246 (344)
Q Consensus 246 N 246 (344)
|
T Consensus 201 ~ 201 (302)
T 2qh8_A 201 I 201 (302)
T ss_dssp S
T ss_pred C
Confidence 7
No 110
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=27.82 E-value=1.4e+02 Score=25.77 Aligned_cols=61 Identities=16% Similarity=0.174 Sum_probs=44.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHHHh-----cCeEEEccccC
Q 019198 30 RAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRK-----NKVCLKGGLKT 94 (344)
Q Consensus 30 ~~I~vi~GDGIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~~~-----~da~l~G~~~~ 94 (344)
.+|+++-|---=-++++++.++|+.+|+++|..-.-+ ...|++..+-+++ +++++-++-..
T Consensus 6 p~V~IimgS~SD~~v~~~a~~~l~~~gi~~ev~V~Sa----HRtp~~l~~~~~~~~~~g~~ViIa~AG~a 71 (166)
T 3oow_A 6 VQVGVIMGSKSDWSTMKECCDILDNLGIGYECEVVSA----HRTPDKMFDYAETAKERGLKVIIAGAGGA 71 (166)
T ss_dssp EEEEEEESSGGGHHHHHHHHHHHHHTTCEEEEEECCT----TTCHHHHHHHHHHTTTTTCCEEEEEECSS
T ss_pred CeEEEEECcHHhHHHHHHHHHHHHHcCCCEEEEEEcC----cCCHHHHHHHHHHHHhCCCcEEEEECCcc
Confidence 4799998866668999999999999998544333222 4678888887753 58888777543
No 111
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=26.36 E-value=2.5e+02 Score=25.05 Aligned_cols=73 Identities=12% Similarity=0.063 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeee-------eeH---hHHHHHHHhCCCCccE
Q 019198 172 IAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNE-------IIV---DNCCMQLVSKPEQFDV 241 (344)
Q Consensus 172 iar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~-------~~v---D~~~~~Lv~~P~~fdV 241 (344)
-.+.|.++-.++|.+++-++.-..-.. +.....+-|.+..+++ +++++. ... -.++.+|++...++|.
T Consensus 168 ~~~~a~~~L~~~G~~~I~~i~~~~~~~-~~~~R~~Gf~~al~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~a 245 (338)
T 3dbi_A 168 TSFNAVAELINAGHQEIAFLTGSMDSP-TSIERLAGYKDALAQH-GIALNEKLIANGKWTPASGAEGVEMLLERGAKFSA 245 (338)
T ss_dssp HHHHHHHHHHHTTCCSEEEECCCTTCH-HHHHHHHHHHHHHHHT-TCCCCGGGEECCCSSHHHHHHHHHHHHHTTCCCSE
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCCCCc-cHHHHHHHHHHHHHHC-CCCCCcceEEeCCCCHHHHHHHHHHHHcCCCCCeE
Confidence 445566666777889988885431111 1223334444444443 122111 111 2456777877778999
Q ss_pred EecCC
Q 019198 242 MVTPN 246 (344)
Q Consensus 242 Ivt~N 246 (344)
|+|.|
T Consensus 246 i~~~n 250 (338)
T 3dbi_A 246 LVASN 250 (338)
T ss_dssp EEESS
T ss_pred EEECC
Confidence 99988
No 112
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}
Probab=26.26 E-value=64 Score=25.39 Aligned_cols=53 Identities=19% Similarity=0.239 Sum_probs=36.0
Q ss_pred ceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeeeHhHHHHHHHhCCCCccEEecCC
Q 019198 187 KVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPN 246 (344)
Q Consensus 187 ~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~vD~~~~~Lv~~P~~fdVIvt~N 246 (344)
+.++||=..-.=-.+.....++++++++||++.+-...+|.+ +.+|+|-..|.
T Consensus 24 ~~vvv~F~a~wc~~C~~~~p~l~~la~~~~~v~f~kvd~d~~-------~~~~~v~~~PT 76 (118)
T 3evi_A 24 VWVIIHLYRSSIPMCLLVNQHLSLLARKFPETKFVKAIVNSC-------IQHYHDNCLPT 76 (118)
T ss_dssp CEEEEEEECTTSHHHHHHHHHHHHHHHHCTTSEEEEEEGGGT-------STTCCGGGCSE
T ss_pred CeEEEEEeCCCChHHHHHHHHHHHHHHHCCCCEEEEEEhHHh-------HHHCCCCCCCE
Confidence 355555322221236778889999999999999999899863 57777544444
No 113
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, LIGA unknown function, transport protein; 1.60A {Methanosarcina acetivorans}
Probab=26.15 E-value=1.1e+02 Score=27.38 Aligned_cols=46 Identities=13% Similarity=0.171 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhhCCCceeeeeeH--hHHHHHHHhCCCCccEEecCCc
Q 019198 202 GLFLESCREVATKYPSIKYNEIIV--DNCCMQLVSKPEQFDVMVTPNL 247 (344)
Q Consensus 202 glf~~~~~eva~eyp~I~~~~~~v--D~~~~~Lv~~P~~fdVIvt~Nl 247 (344)
..+.++.++..++||+|+++...- ..+..++...-..+||+++.+.
T Consensus 17 ~~~~~l~~~F~~~~~gi~V~~~~~~s~~l~~~i~~~g~~~Dv~~~a~~ 64 (296)
T 3cfx_A 17 VPFEELEAEFEAQHPGVDVQREAAGSAQSVRKITELGKKADVLASADY 64 (296)
T ss_dssp HHHHHHHHHHHHHSTTCEEEEEECCHHHHHHHHHTSCCCCSEEEESST
T ss_pred HHHHHHHHHHHHHCCCceEEEEeCchHHHHHHHHhCCCCCcEEEECCh
Confidence 467788888888899998887654 3456666652346999998764
No 114
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=25.81 E-value=2.5e+02 Score=24.53 Aligned_cols=65 Identities=12% Similarity=0.090 Sum_probs=36.9
Q ss_pred CCceEEEEEcCCC---CcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHH--HhcCeEEEccccC
Q 019198 27 GSPRAVTLIPGDG---IGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSI--RKNKVCLKGGLKT 94 (344)
Q Consensus 27 ~~~~~I~vi~GDG---IGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~--~~~da~l~G~~~~ 94 (344)
++..+|+++--|- --.++...+.+.++..|..+.+.. .... ..-..+.++.+ ++.|+++..+...
T Consensus 13 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~--~~~~-~~~~~~~~~~l~~~~vdgiI~~~~~~ 82 (303)
T 3kke_A 13 SRSGTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQ--IDAP-PRGTQQLSRLVSEGRVDGVLLQRRED 82 (303)
T ss_dssp ----CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEEE--CCST-THHHHHHHHHHHSCSSSEEEECCCTT
T ss_pred CCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEe--CCCC-hHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 3467899885443 346788888888888887766533 2111 11123444544 4688998877543
No 115
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=25.43 E-value=2.4e+02 Score=22.04 Aligned_cols=57 Identities=7% Similarity=-0.045 Sum_probs=38.9
Q ss_pred CceEEEEEcCCCCcHHHH-HHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHHHhcCeEEEccc
Q 019198 28 SPRAVTLIPGDGIGPLVT-NAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRKNKVCLKGGL 92 (344)
Q Consensus 28 ~~~~I~vi~GDGIGpEV~-~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~~~~da~l~G~~ 92 (344)
.+++|.++=+.|..-.++ ...++..+.-|++++..-...+.. . +.++++|++|+||=
T Consensus 5 ~~mkIlL~C~aGmSTsllv~km~~~a~~~gi~v~i~a~~~~~~----~----~~~~~~DvvLLgPQ 62 (108)
T 3nbm_A 5 KELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAH----Y----DIMGVYDLIILAPQ 62 (108)
T ss_dssp CCEEEEEEESSSSHHHHHHHHHHHHHHHHTCSEEEEEEETTSC----T----TTGGGCSEEEECGG
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEcchHHH----H----hhccCCCEEEEChH
Confidence 468999999999887764 344455555588887766555321 1 22367999999993
No 116
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=25.40 E-value=1.4e+02 Score=27.67 Aligned_cols=61 Identities=10% Similarity=0.169 Sum_probs=42.5
Q ss_pred ceEEEEEcCCCCcH-HHHHHHHHHHHHcCC-CeeEEEEEeeCCCCCCcHHHHHHHHhcCeEEEcc
Q 019198 29 PRAVTLIPGDGIGP-LVTNAVEQVMEAMHA-PIYFEKYEVHGDMKRVPQQVLDSIRKNKVCLKGG 91 (344)
Q Consensus 29 ~~~I~vi~GDGIGp-EV~~~~~~vl~~~~~-~i~~~~~~~g~~g~~lp~~~~~~~~~~da~l~G~ 91 (344)
+.+|++||=..--| +..+...++++.+|+ .++. .++....+.-.++..+.++++|+++++-
T Consensus 56 ~~~I~~IptAs~~~~~~~~~~~~~f~~lG~~~v~~--L~i~~r~~a~~~~~~~~l~~ad~I~v~G 118 (291)
T 3en0_A 56 DAIIGIIPSASREPLLIGERYQTIFSDMGVKELKV--LDIRDRAQGDDSGYRLFVEQCTGIFMTG 118 (291)
T ss_dssp GCEEEEECTTCSSHHHHHHHHHHHHHHHCCSEEEE--CCCCSGGGGGCHHHHHHHHHCSEEEECC
T ss_pred CCeEEEEeCCCCChHHHHHHHHHHHHHcCCCeeEE--EEecCccccCCHHHHHHHhcCCEEEECC
Confidence 47999998655334 567888888888887 3443 3442212344567788999999999876
No 117
>2b3f_A Glucose-binding protein; protein-carbohydrate complex, periplasmic binding protein, galactose, GBP, sugar binding protein; HET: GAL; 1.56A {Thermus thermophilus HB27} PDB: 2b3b_A*
Probab=25.34 E-value=1e+02 Score=28.51 Aligned_cols=45 Identities=18% Similarity=0.098 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHhhCCCceeeeeeH-----hHHHHHHH---hCCCCccEEecC
Q 019198 201 DGLFLESCREVATKYPSIKYNEIIV-----DNCCMQLV---SKPEQFDVMVTP 245 (344)
Q Consensus 201 dglf~~~~~eva~eyp~I~~~~~~v-----D~~~~~Lv---~~P~~fdVIvt~ 245 (344)
...|++++++..++||+|+++...+ |....+|. ..-..+||+...
T Consensus 14 ~~~~~~~~~~f~~~~p~i~V~~~~~~~~~~~~~~~kl~~~~~~g~~pDv~~~~ 66 (400)
T 2b3f_A 14 GPALEALIRLYKQKYPGVEVINATVTGGAGVNARAVLKTRMLGGDPPDTFQVH 66 (400)
T ss_dssp CHHHHHHHHHHHHHCTTCEEEEEECCCGGGHHHHHHHHHHHHTTCCCSEEEEE
T ss_pred HHHHHHHHHHHHHHCCCceEEEEecCCCcchhHHHHHHHHHhCCCCCCEEeec
Confidence 3578888888888999999988876 34444443 234567988776
No 118
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=25.05 E-value=1.7e+02 Score=25.31 Aligned_cols=64 Identities=8% Similarity=0.045 Sum_probs=33.0
Q ss_pred CceEEEEEcCC---CCcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHH--HhcCeEEEcccc
Q 019198 28 SPRAVTLIPGD---GIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSI--RKNKVCLKGGLK 93 (344)
Q Consensus 28 ~~~~I~vi~GD---GIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~--~~~da~l~G~~~ 93 (344)
++.+|+++--+ ....++...+.+.++..|..+.+.. +.... ..--.+.++.+ ++.|+++..+..
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~-~~~~~-~~~~~~~~~~l~~~~vdgiI~~~~~ 75 (290)
T 3clk_A 7 SSNVIAAVVSSVRTNFAQQILDGIQEEAHKNGYNLIIVY-SGSAD-PEEQKHALLTAIERPVMGILLLSIA 75 (290)
T ss_dssp -CCEEEEECCCCSSSHHHHHHHHHHHHHHTTTCEEEEEC------------CHHHHHHSSCCSEEEEESCC
T ss_pred cCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEe-CCCCC-HHHHHHHHHHHHhcCCCEEEEeccc
Confidence 45789998543 2345677777777777776655430 22111 01112234444 468888876644
No 119
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=24.55 E-value=1.5e+02 Score=25.62 Aligned_cols=61 Identities=10% Similarity=0.138 Sum_probs=44.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHHH-----hcCeEEEccccC
Q 019198 30 RAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIR-----KNKVCLKGGLKT 94 (344)
Q Consensus 30 ~~I~vi~GDGIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~~-----~~da~l~G~~~~ 94 (344)
.+|+++-|---=-++++.+.++|+.+|+++|..-.-+ ...|++..+-++ .+++++-++-..
T Consensus 7 ~~V~IimgS~SD~~v~~~a~~~l~~~gi~~ev~V~Sa----HR~p~~~~~~~~~a~~~g~~ViIa~AG~a 72 (169)
T 3trh_A 7 IFVAILMGSDSDLSTMETAFTELKSLGIPFEAHILSA----HRTPKETVEFVENADNRGCAVFIAAAGLA 72 (169)
T ss_dssp CEEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECCT----TTSHHHHHHHHHHHHHTTEEEEEEEECSS
T ss_pred CcEEEEECcHHhHHHHHHHHHHHHHcCCCEEEEEEcc----cCCHHHHHHHHHHHHhCCCcEEEEECChh
Confidence 4788988766667899999999999998855433222 467888877665 367888777543
No 120
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=24.51 E-value=2.3e+02 Score=22.11 Aligned_cols=65 Identities=15% Similarity=0.087 Sum_probs=31.5
Q ss_pred HHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHhhCC-CceeeeeeHhHHHHHHHhCCCCccEEecCCcch
Q 019198 176 AFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYP-SIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYG 249 (344)
Q Consensus 176 AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp-~I~~~~~~vD~~~~~Lv~~P~~fdVIvt~NlfG 249 (344)
+..+|+. +. +|+.+|.+-- ..+.+++-.+..+ .+++.+.-+......+-..++.||+|++...|.
T Consensus 56 ~~~l~~~-~~-~v~~vD~~~~-------~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~ 121 (171)
T 1ws6_A 56 GLEAASE-GW-EAVLVEKDPE-------AVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPYA 121 (171)
T ss_dssp HHHHHHT-TC-EEEEECCCHH-------HHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCTT
T ss_pred HHHHHHC-CC-eEEEEeCCHH-------HHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCCCc
Confidence 4444544 33 3888885321 2233333332222 344333332222223333456899999987664
No 121
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=24.39 E-value=1.4e+02 Score=25.45 Aligned_cols=61 Identities=7% Similarity=0.116 Sum_probs=43.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHHH------hcCeEEEccccC
Q 019198 30 RAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIR------KNKVCLKGGLKT 94 (344)
Q Consensus 30 ~~I~vi~GDGIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~~------~~da~l~G~~~~ 94 (344)
.+|+++-|---=-++++++.++|+.+|+++|..-.-+ ...|++..+-.+ ..++++-++-..
T Consensus 3 ~~V~Iimgs~SD~~v~~~a~~~l~~~gi~~ev~V~sa----HR~p~~~~~~~~~a~~~~~~~ViIa~AG~a 69 (159)
T 3rg8_A 3 PLVIILMGSSSDMGHAEKIASELKTFGIEYAIRIGSA----HKTAEHVVSMLKEYEALDRPKLYITIAGRS 69 (159)
T ss_dssp CEEEEEESSGGGHHHHHHHHHHHHHTTCEEEEEECCT----TTCHHHHHHHHHHHHTSCSCEEEEEECCSS
T ss_pred CeEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEEcc----cCCHHHHHHHHHHhhhcCCCcEEEEECCch
Confidence 3688887765667899999999999998755432222 467888877664 367888777543
No 122
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=24.35 E-value=3.1e+02 Score=23.61 Aligned_cols=80 Identities=5% Similarity=-0.097 Sum_probs=39.8
Q ss_pred eHHHHHHHHHHHHHHHHh--------cCCCceEEEecc-chhhhchHHHHHHHHHHHhhC-CCceeeee-e----Hh---
Q 019198 165 TKFCSERIAKYAFEYAYL--------NYRKKVTAVHKA-NIMKLADGLFLESCREVATKY-PSIKYNEI-I----VD--- 226 (344)
Q Consensus 165 Tr~~~eRiar~AFe~A~~--------r~~~~Vt~v~Ka-Nvlk~tdglf~~~~~eva~ey-p~I~~~~~-~----vD--- 226 (344)
...+.+..+++..+...+ +|.+++.++.-. +.. +.....+-|.+..+++ +.++.... . .+
T Consensus 112 ~~~~g~~~~~~L~~~~~~~~~~~~~g~g~~~i~~i~~~~~~~--~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~ 189 (309)
T 2fvy_A 112 SKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHP--DAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAK 189 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCTTCSSSEEEEEEECSTTCH--HHHHHHHHHHHHHHHTTCCEEEEEEEECTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccCCCceEEEEEEcCCCCc--cHHHHHHHHHHHHHhcCCceEEEEEecCCCCHHHHH
Confidence 455556666666655432 455677666422 211 1122333344443333 33332211 1 11
Q ss_pred HHHHHHHhC-C-CCccEEecCC
Q 019198 227 NCCMQLVSK-P-EQFDVMVTPN 246 (344)
Q Consensus 227 ~~~~~Lv~~-P-~~fdVIvt~N 246 (344)
.++.+|++. | ..+|.|+|.|
T Consensus 190 ~~~~~~l~~~~~~~~~ai~~~~ 211 (309)
T 2fvy_A 190 DKMDAWLSGPNANKIEVVIANN 211 (309)
T ss_dssp HHHHHHHTSTTGGGCCEEEESS
T ss_pred HHHHHHHHhCCCCCccEEEECC
Confidence 345566665 6 6899999987
No 123
>3bvr_A NOTI restriction endonuclease; protein-DNA complex; HET: DNA; 2.50A {Nocardia otitidiscaviarum} PDB: 3bvq_A* 3c25_A*
Probab=24.34 E-value=20 Score=34.16 Aligned_cols=29 Identities=24% Similarity=0.319 Sum_probs=23.8
Q ss_pred hCCCCccEEecCCcc--hhhhhhhhhhhcCC
Q 019198 234 SKPEQFDVMVTPNLY--GNLVSNTAAGIAGG 262 (344)
Q Consensus 234 ~~P~~fdVIvt~Nlf--GDIlSDlaa~l~Gg 262 (344)
.+++.||||+|||.+ +.|++|.+.-+.|=
T Consensus 71 ~d~ePydvIiCPiRL~dy~il~~~s~~~Fg~ 101 (383)
T 3bvr_A 71 VDNERYDWLVCPNRALDPLFMSAASRKLFGY 101 (383)
T ss_dssp ETTEEEEEECCGGGGCCHHHHHHHHHHHHTC
T ss_pred CCCCCceEEEcccccccHHHHHHHHHHhcCC
Confidence 467788999999976 55889998888775
No 124
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=24.10 E-value=1.7e+02 Score=26.31 Aligned_cols=64 Identities=17% Similarity=0.131 Sum_probs=33.7
Q ss_pred CCceEEEEEcCC---CCcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHH--HhcCeEEEcccc
Q 019198 27 GSPRAVTLIPGD---GIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSI--RKNKVCLKGGLK 93 (344)
Q Consensus 27 ~~~~~I~vi~GD---GIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~--~~~da~l~G~~~ 93 (344)
++.++|+++--+ ---.++...+.+.++..|..+.+. +.... ..-..+.++.+ ++.|.++..+..
T Consensus 66 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~-~~~~~~~i~~l~~~~vdGiIi~~~~ 134 (344)
T 3kjx_A 66 NRVNLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVG--VTDYL-PEKEEKVLYEMLSWRPSGVIIAGLE 134 (344)
T ss_dssp SCCSEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEE--ECTTC-HHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEE--eCCCC-HHHHHHHHHHHHhCCCCEEEEECCC
Confidence 456889998544 234566666666666666655432 22111 01112233333 357888876543
No 125
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural GE PSI; 2.01A {Pseudomonas aeruginosa}
Probab=24.05 E-value=38 Score=32.38 Aligned_cols=18 Identities=39% Similarity=0.743 Sum_probs=15.3
Q ss_pred EEEEEcCC--CCcHHHHHHH
Q 019198 31 AVTLIPGD--GIGPLVTNAV 48 (344)
Q Consensus 31 ~I~vi~GD--GIGpEV~~~~ 48 (344)
+|++-.|| ||||||+-.+
T Consensus 4 ~iaIT~GDpaGIGpEii~ka 23 (328)
T 1yxo_A 4 RFALTPGEPAGIGPDLCLLL 23 (328)
T ss_dssp CEEEECCSTTSSHHHHHHHH
T ss_pred EEEEcCCCCcchhHHHHHHH
Confidence 58888998 8999998755
No 126
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=23.99 E-value=2.4e+02 Score=24.71 Aligned_cols=59 Identities=7% Similarity=0.132 Sum_probs=36.6
Q ss_pred ceEEEEEcCCCCc----HHHHHHHHHHHHHcCC---CeeEEEEEeeCCCCCCcHHHHHHH--HhcCeEEEc
Q 019198 29 PRAVTLIPGDGIG----PLVTNAVEQVMEAMHA---PIYFEKYEVHGDMKRVPQQVLDSI--RKNKVCLKG 90 (344)
Q Consensus 29 ~~~I~vi~GDGIG----pEV~~~~~~vl~~~~~---~i~~~~~~~g~~g~~lp~~~~~~~--~~~da~l~G 90 (344)
+++|+|+|. +. .+++....+.++..|. .+.+...+.... ..--.+.++.+ ++.|+++..
T Consensus 2 ~~~Igvi~~--~~~p~~~~i~~gi~~~l~~~gy~g~~v~l~~~~~~~~-~~~~~~~~~~l~~~~vDgII~~ 69 (295)
T 3lft_A 2 NAKIGVLQF--VSHPSLDLIYKGIQDGLAEEGYKDDQVKIDFMNSEGD-QSKVATMSKQLVANGNDLVVGI 69 (295)
T ss_dssp CEEEEEEEC--SCCHHHHHHHHHHHHHHHHTTCCGGGEEEEEEECTTC-HHHHHHHHHHHTTSSCSEEEEE
T ss_pred ceEEEEEEc--cCChhHHHHHHHHHHHHHHcCCCCCceEEEEecCCCC-HHHHHHHHHHHHhcCCCEEEEC
Confidence 689999963 43 5788888888888888 777766555332 00012233333 357877754
No 127
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A
Probab=23.95 E-value=1.2e+02 Score=26.84 Aligned_cols=46 Identities=13% Similarity=0.122 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhhCCCceeeeeeH--hHHHHHHHhCCCCccEEecCCc
Q 019198 202 GLFLESCREVATKYPSIKYNEIIV--DNCCMQLVSKPEQFDVMVTPNL 247 (344)
Q Consensus 202 glf~~~~~eva~eyp~I~~~~~~v--D~~~~~Lv~~P~~fdVIvt~Nl 247 (344)
..+.++..+..++||+|+++...- ..+..++...-..+||+++.+.
T Consensus 17 ~~~~~l~~~F~~~~~gi~V~~~~~~s~~l~~~i~~~g~~~Dv~~~a~~ 64 (295)
T 3cij_A 17 EPMKAFKRAFEEKHPNVEVQTEAAGSAATIRKVTELGRKADVIATADY 64 (295)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEEECHHHHHHHHHTSCCCCSEEEESST
T ss_pred HHHHHHHHHHHHHCCCceEEEEeCcHHHHHHHHHhCCCCCCEEEEcCh
Confidence 467788888888899998887654 3455666552336999998764
No 128
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=23.53 E-value=1.7e+02 Score=26.09 Aligned_cols=63 Identities=8% Similarity=0.068 Sum_probs=34.7
Q ss_pred CCceEEEEEcC---CCCcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHH--HhcCeEEEccc
Q 019198 27 GSPRAVTLIPG---DGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSI--RKNKVCLKGGL 92 (344)
Q Consensus 27 ~~~~~I~vi~G---DGIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~--~~~da~l~G~~ 92 (344)
++..+|+++-- +.-..++...+.+.++..|..+.+. +.... .....+.++.+ ++.|+++..+.
T Consensus 58 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~-~~~~~~~~~~l~~~~vdgiI~~~~ 125 (332)
T 2hsg_A 58 KKTTTVGVIIPDISNIFYAELARGIEDIATMYKYNIILS--NSDQN-QDKELHLLNNMLGKQVDGIIFMSG 125 (332)
T ss_dssp C-CCEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEEEEE--ECCSH-HHHHHHHHHHTSCCSSCCEEECCS
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEE--eCCCC-hHHHHHHHHHHHhCCCcEEEEecC
Confidence 45688998843 3345677788888887778765543 22110 00011233333 35788877654
No 129
>4gqo_A LMO0859 protein; virulence, pathogenesis, vaccine candidate, center for struc genomics of infectious diseases, csgid, niaid; HET: MSE PGE; 2.10A {Listeria monocytogenes}
Probab=23.23 E-value=1.3e+02 Score=27.95 Aligned_cols=59 Identities=10% Similarity=0.022 Sum_probs=36.1
Q ss_pred CCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeeeH---hHHH---HHHHhCCCCccEEec
Q 019198 184 YRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIV---DNCC---MQLVSKPEQFDVMVT 244 (344)
Q Consensus 184 ~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~v---D~~~---~~Lv~~P~~fdVIvt 244 (344)
|+.+||+-+=.|-- -...|.+++++..++||+|+++...+ |..- ...+..-...||+.+
T Consensus 28 gk~~it~W~~~~~~--~~~~~~~~i~~F~~~~p~i~V~~~~~~~~~~~~~kl~~~~asg~~PDv~~~ 92 (433)
T 4gqo_A 28 GKTKVTFWAAPNPT--QVKYWDEMAKAYEKENPDVTIEVSQMKESPSSEATIQSAIASKTAPTMSEN 92 (433)
T ss_dssp -CEEEEEEECSCHH--HHHHHHHHHHHHHHHCTTEEEEEEECCCSSSHHHHHHHHHHHTCCCSEEEE
T ss_pred CCEEEEEEeCCCch--HHHHHHHHHHHHHHHCcCeEEEEEEcCCcHHHHHHHHHHHHCCCCCeEEEE
Confidence 34456665533321 13578888888888999999998765 2222 222444566888764
No 130
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=23.19 E-value=74 Score=24.63 Aligned_cols=27 Identities=15% Similarity=0.021 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEec
Q 019198 166 KFCSERIAKYAFEYAYLNYRKKVTAVHK 193 (344)
Q Consensus 166 r~~~eRiar~AFe~A~~r~~~~Vt~v~K 193 (344)
.+.+++.+++|.++|++. ..+|+++|=
T Consensus 15 s~~s~~al~~A~~la~~~-~a~l~ll~v 41 (146)
T 3s3t_A 15 SDAAQAAFTEAVNIAQRH-QANLTALYV 41 (146)
T ss_dssp SHHHHHHHHHHHHHHHHH-TCEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHhc-CCEEEEEEE
Confidence 356899999999999987 467888764
No 131
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=23.03 E-value=1.8e+02 Score=25.09 Aligned_cols=72 Identities=21% Similarity=0.117 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeeeH-----hHHHHHHHhCCCCccEEecCC
Q 019198 172 IAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIV-----DNCCMQLVSKPEQFDVMVTPN 246 (344)
Q Consensus 172 iar~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~v-----D~~~~~Lv~~P~~fdVIvt~N 246 (344)
..+.|.++-. +|.+++-++.-..-.. +.....+-+.+..+++ +++++..++ -.++.++++...++|.|+|.|
T Consensus 110 ~g~~a~~~L~-~G~~~I~~i~~~~~~~-~~~~R~~Gf~~~l~~~-g~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~ 186 (277)
T 3hs3_A 110 GGKESIKLLS-KKIEKVLIQHWPLSLP-TIRERIEAMTAEASKL-KIDYLLEETPENNPYISAQSALNKSNQFDAIITVN 186 (277)
T ss_dssp HHHHHHHTSC-TTCCEEEEEESCTTSH-HHHHHHHHHHHHHHHT-TCEEEEEECCSSCHHHHHHHHHHTGGGCSEEECSS
T ss_pred HHHHHHHHHH-hCCCEEEEEeCCCcCc-cHHHHHHHHHHHHHHC-CCCCCCCCccCCchHHHHHHHHcCCCCCCEEEECC
Confidence 3445555555 7888988885432111 1223334455544444 344433111 245677777777899999988
No 132
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=22.86 E-value=1.7e+02 Score=26.55 Aligned_cols=19 Identities=5% Similarity=0.162 Sum_probs=15.4
Q ss_pred HHHHHHhCCCCccEEecCC
Q 019198 228 CCMQLVSKPEQFDVMVTPN 246 (344)
Q Consensus 228 ~~~~Lv~~P~~fdVIvt~N 246 (344)
++.+|++....+|.|+|.|
T Consensus 258 ~~~~ll~~~~~~~ai~~~n 276 (366)
T 3h5t_A 258 VAKELLETHPDLTAVLCTV 276 (366)
T ss_dssp HHHHHHHHCTTCCEEEESS
T ss_pred HHHHHHcCCCCCcEEEECC
Confidence 5667777777899999988
No 133
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=22.69 E-value=2.6e+02 Score=23.71 Aligned_cols=73 Identities=5% Similarity=-0.139 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhcCCCceEEEeccc-h---hhhchH-HHHHHHHHHHhhCCCceee-----e--eeHh---HHHHHHHhCC
Q 019198 172 IAKYAFEYAYLNYRKKVTAVHKAN-I---MKLADG-LFLESCREVATKYPSIKYN-----E--IIVD---NCCMQLVSKP 236 (344)
Q Consensus 172 iar~AFe~A~~r~~~~Vt~v~KaN-v---lk~tdg-lf~~~~~eva~eyp~I~~~-----~--~~vD---~~~~~Lv~~P 236 (344)
..+.+.++..++|.+|+.++.-.. - .. +.. ...+-+.+..+++ +++++ . .-.+ .++.++++..
T Consensus 101 ~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~-~~~~~R~~gf~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 178 (276)
T 2h0a_A 101 GGRLAGAYLARFPGPIFAIAVEEEPDRAFRR-TVFAERMAGFQEALKEA-GRPFSPDRLYITRHSQEGGRLALRHFLEKA 178 (276)
T ss_dssp HHHHHHHHHTTSSSCEEEEEECCSCCC---C-CHHHHHHHHHHHHHHHT-TCCCCGGGEEEECSSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCCeEEEEecCcccccccc-hhHHHHHHHHHHHHHHc-CCCCChHHeeecCCChHHHHHHHHHHHhCC
Confidence 344555566667888988775322 1 11 112 2233334433333 12211 1 1112 3456777776
Q ss_pred CCccEEecCC
Q 019198 237 EQFDVMVTPN 246 (344)
Q Consensus 237 ~~fdVIvt~N 246 (344)
..+|.|+|.|
T Consensus 179 ~~~~ai~~~~ 188 (276)
T 2h0a_A 179 SPPLNVFAGA 188 (276)
T ss_dssp CSSEEEECSS
T ss_pred CCCCEEEECC
Confidence 6799999876
No 134
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=22.54 E-value=78 Score=24.44 Aligned_cols=28 Identities=4% Similarity=-0.089 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCceEEEeccc
Q 019198 167 FCSERIAKYAFEYAYLNYRKKVTAVHKAN 195 (344)
Q Consensus 167 ~~~eRiar~AFe~A~~r~~~~Vt~v~KaN 195 (344)
+.+++.+++|.++|++. ..+|+++|=..
T Consensus 13 ~~s~~al~~A~~la~~~-~a~l~ll~v~~ 40 (147)
T 3hgm_A 13 KGAVKALEKGVGLQQLT-GAELYILCVFK 40 (147)
T ss_dssp HHHHHHHHHHHHHHHHH-CCEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhc-CCEEEEEEEec
Confidence 56899999999999987 57888887433
No 135
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=22.32 E-value=2.9e+02 Score=23.42 Aligned_cols=56 Identities=9% Similarity=-0.018 Sum_probs=36.1
Q ss_pred CCceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeeeHh--HHHHHHHhCCCCccEEecC
Q 019198 185 RKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVD--NCCMQLVSKPEQFDVMVTP 245 (344)
Q Consensus 185 ~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~vD--~~~~~Lv~~P~~fdVIvt~ 245 (344)
..+|++.-=..+. ..++-.+..++.++||+|+++-..-+ .....|.. +++|+.++.
T Consensus 90 ~g~l~Ig~~~~~~---~~~l~~~l~~f~~~~P~i~l~~~~~~~~~~~~~l~~--g~~Dl~i~~ 147 (294)
T 1ixc_A 90 VGELSVAYFGTPI---YRSLPLLLRAFLTSTPTATVSLTHMTKDEQVEGLLA--GTIHVGFSR 147 (294)
T ss_dssp CEEEEEEECSGGG---GTHHHHHHHHHHHHCTTEEEEEEECCHHHHHHHHHH--TSCSEEEES
T ss_pred CceEEEEEccchh---HHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHC--CCccEEEEe
Confidence 4567776544433 34677888888999999988776543 44444444 567776654
No 136
>1nha_A TFIIF-alpha, transcription initiation factor IIF, alpha subunit; transcription factor, human general transcription factor TFIIF, RAP74; NMR {Homo sapiens} SCOP: a.4.5.30 PDB: 1onv_A
Probab=22.30 E-value=41 Score=25.77 Aligned_cols=35 Identities=34% Similarity=0.469 Sum_probs=26.5
Q ss_pred HHHHHHHHHcCcccCCCCC-------CCCcHHHHHHHHHHhc
Q 019198 309 ETAVKRVISEEKYRTKDLG-------GGCTTQQIVDAVIANL 343 (344)
Q Consensus 309 ~~Av~~~l~~g~~~T~Dlg-------G~~sT~e~~~aV~~~l 343 (344)
|++|+++|....+.|.||- +..+++|..+.+.+.|
T Consensus 21 Ee~VRryL~rkPmTT~dLl~KFK~r~~~~~~~e~v~~~a~IL 62 (82)
T 1nha_A 21 EDAVRRYLTRKPMTTKDLLKKFQTKKTGLSSEQTVNVLAQIL 62 (82)
T ss_dssp HHHHHHHHHHSCBCHHHHHHHTTSSCCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHhcccCCCHHHHHHHHHHH
Confidence 4789999987777888982 3468888888776654
No 137
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=22.18 E-value=1.8e+02 Score=25.80 Aligned_cols=62 Identities=6% Similarity=-0.064 Sum_probs=35.9
Q ss_pred HHHHHHHhcCCCceEEEeccchhhhchHHHHHHHHHHHhhCC---CceeeeeeHhHHHHHHHhCCCCccEEecCCcchhh
Q 019198 175 YAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYP---SIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNL 251 (344)
Q Consensus 175 ~AFe~A~~r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp---~I~~~~~~vD~~~~~Lv~~P~~fdVIvt~NlfGDI 251 (344)
.+..+|++.+ .+|+.+|-+- -..+.+++-.++.+ .|++... |.. .+ ++.||+|++.+.+..+
T Consensus 86 ~~~~la~~~~-~~v~gvD~s~-------~~~~~a~~~~~~~~~~~~v~~~~~--d~~--~~---~~~fD~v~~~~~~~~~ 150 (302)
T 3hem_A 86 TMRHAVAEYD-VNVIGLTLSE-------NQYAHDKAMFDEVDSPRRKEVRIQ--GWE--EF---DEPVDRIVSLGAFEHF 150 (302)
T ss_dssp HHHHHHHHHC-CEEEEEECCH-------HHHHHHHHHHHHSCCSSCEEEEEC--CGG--GC---CCCCSEEEEESCGGGT
T ss_pred HHHHHHHhCC-CEEEEEECCH-------HHHHHHHHHHHhcCCCCceEEEEC--CHH--Hc---CCCccEEEEcchHHhc
Confidence 4556666655 6899998432 22344444443322 3444433 332 22 7899999999887554
No 138
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=22.09 E-value=3.8e+02 Score=23.07 Aligned_cols=62 Identities=10% Similarity=0.019 Sum_probs=34.5
Q ss_pred CceEEEEEcCCC---CcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCC-cHH---HHHHH--HhcCeEEEcccc
Q 019198 28 SPRAVTLIPGDG---IGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRV-PQQ---VLDSI--RKNKVCLKGGLK 93 (344)
Q Consensus 28 ~~~~I~vi~GDG---IGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~l-p~~---~~~~~--~~~da~l~G~~~ 93 (344)
+..+|+++--+- -..++...+.+.++..|..+.+ .+... +.- ..+ .++.+ ++.|+++..+..
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~--~~~~~--~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 77 (290)
T 2rgy_A 7 QLGIIGLFVPTFFGSYYGTILKQTDLELRAVHRHVVV--ATGCG--ESTPREQALEAVRFLIGRDCDGVVVISHD 77 (290)
T ss_dssp -CCEEEEECSCSCSHHHHHHHHHHHHHHHHTTCEEEE--ECCCS--SSCHHHHHHHHHHHHHHTTCSEEEECCSS
T ss_pred CCCeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEE--EeCCC--chhhhhhHHHHHHHHHhcCccEEEEecCC
Confidence 467899985442 2346677777777777765543 22221 111 122 44444 468888887644
No 139
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=21.74 E-value=2.9e+02 Score=24.62 Aligned_cols=75 Identities=17% Similarity=0.172 Sum_probs=44.3
Q ss_pred CCceEEEEEcCCC--CcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHHHh--cCeEEEccccCCCCCCCCc
Q 019198 27 GSPRAVTLIPGDG--IGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRK--NKVCLKGGLKTPVGGGVSS 102 (344)
Q Consensus 27 ~~~~~I~vi~GDG--IGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~~~--~da~l~G~~~~p~~~~~~s 102 (344)
+++.-++..+||. +|--++... |+..|+++ +++|. +.-|++..+.+++ .|++..-.+.++..+..+.
T Consensus 123 ~~~vlla~~~gd~HdiG~~iva~~---L~~~G~~V----i~LG~--~vp~e~l~~~~~~~~~d~V~lS~l~~~~~~~~~~ 193 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNIVTAL---LRANGYNV----VDLGR--DVPAEEVLAAVQKEKPIMLTGTALMTTTMYAFKE 193 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHHHHHH---HHHTTCEE----EEEEE--ECCSHHHHHHHHHHCCSEEEEECCCTTTTTHHHH
T ss_pred CCeEEEEeCCCCccHHHHHHHHHH---HHHCCCEE----EECCC--CCCHHHHHHHHHHcCCCEEEEEeeccCCHHHHHH
Confidence 4567777888887 888777665 66777544 34543 2235566678875 5666666655543322223
Q ss_pred hhHHHHhh
Q 019198 103 LNVQLRKE 110 (344)
Q Consensus 103 ~~~~LR~~ 110 (344)
....||+.
T Consensus 194 ~i~~l~~~ 201 (258)
T 2i2x_B 194 VNDMLLEN 201 (258)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhc
Confidence 34456653
No 140
>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii}
Probab=21.60 E-value=1.5e+02 Score=26.38 Aligned_cols=46 Identities=11% Similarity=0.242 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhhCCCceeeeeeHh--HHHHHHHhCCCCccEEecCCc
Q 019198 202 GLFLESCREVATKYPSIKYNEIIVD--NCCMQLVSKPEQFDVMVTPNL 247 (344)
Q Consensus 202 glf~~~~~eva~eyp~I~~~~~~vD--~~~~~Lv~~P~~fdVIvt~Nl 247 (344)
..+.++.++..++||+|+++...-. .+..|+...-..+||+++.+.
T Consensus 17 ~~~~~l~~~F~~~~~gi~V~~~~~~s~~l~~~i~~~g~~~Dv~~~a~~ 64 (292)
T 3cfz_A 17 VPFEEYEKMFEKEHPNVDVEREPAGSVACVRKIIDLGKKADILASADY 64 (292)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEECHHHHHHHHHTSCCCCSEEEESST
T ss_pred HHHHHHHHHHHHHCCCceEEEEeCCHHHHHHHHHhcCCCCcEEEECCh
Confidence 4677788887788999888876543 455666552346999998764
No 141
>2heu_A Sugar ABC transporter, sugar-binding protein; periplasmic binding protein, transport protein; 1.04A {Streptococcus pneumoniae} PDB: 2hq0_A 2i58_A* 2hfb_A
Probab=21.58 E-value=1.1e+02 Score=28.35 Aligned_cols=57 Identities=21% Similarity=0.202 Sum_probs=37.6
Q ss_pred CceEEEeccchhhhchHHHHHHHHHHHhhCCCceeeeeeHhHHHHHH---HhCCCCccEEec-C
Q 019198 186 KKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQL---VSKPEQFDVMVT-P 245 (344)
Q Consensus 186 ~~Vt~v~KaNvlk~tdglf~~~~~eva~eyp~I~~~~~~vD~~~~~L---v~~P~~fdVIvt-~ 245 (344)
..|++.+-.+- ....|++++++..++||+|+++...++....+| +..-..+||+.+ .
T Consensus 19 ~tl~~~~~~~~---~~~~~~~~~~~f~~~~p~i~V~~~~~~~~~~kl~~~~~~g~~pDv~~~~~ 79 (401)
T 2heu_A 19 VTIEYFNQKKE---MTKTLEEITRDFEKENPKIKVKVVNVPNAGEVLKTRVLAGDVPDVVNIYP 79 (401)
T ss_dssp EEEEEECCCGG---GHHHHHHHHHHHHHHCTTEEEEEECCTTHHHHHHHHHHTTCCCSEEECCT
T ss_pred EEEEEEecCCc---HHHHHHHHHHHHHHHCcCeEEEEEeCCcHHHHHHHHHhcCCCCCEEEecC
Confidence 34665553221 125678888888889999999988776543333 334467899988 5
No 142
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=21.22 E-value=3e+02 Score=24.01 Aligned_cols=65 Identities=11% Similarity=0.001 Sum_probs=35.5
Q ss_pred CCceEEEEEcCC--------CCcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHH--HhcCeEEEccccC
Q 019198 27 GSPRAVTLIPGD--------GIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSI--RKNKVCLKGGLKT 94 (344)
Q Consensus 27 ~~~~~I~vi~GD--------GIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~--~~~da~l~G~~~~ 94 (344)
++..+|+++--+ .--.++...+.+.++..|..+.+. ..... .....+.++.+ ++.|+++..|...
T Consensus 20 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~-~~~~~~~~~~l~~~~vdgiIi~~~~~ 94 (305)
T 3huu_A 20 NKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMT--VSENS-GDLYHEVKTMIQSKSVDGFILLYSLK 94 (305)
T ss_dssp -CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEEC--CCSSH-HHHHHHHHHHHHTTCCSEEEESSCBT
T ss_pred CCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEE--eCCCC-hHHHHHHHHHHHhCCCCEEEEeCCcC
Confidence 456899999555 123466667777777777655542 11110 01112334444 4689988876543
No 143
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=20.52 E-value=1.9e+02 Score=25.74 Aligned_cols=66 Identities=8% Similarity=-0.002 Sum_probs=38.1
Q ss_pred CCCceEEEEEcCC----CCcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCC-CcHHHHHHH--HhcCeEEEccc
Q 019198 26 DGSPRAVTLIPGD----GIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKR-VPQQVLDSI--RKNKVCLKGGL 92 (344)
Q Consensus 26 ~~~~~~I~vi~GD----GIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~-lp~~~~~~~--~~~da~l~G~~ 92 (344)
.+++.+|+++--+ ---.+++....+.++..|..+.+..++...+++. --.+.++.+ ++.|+++. +.
T Consensus 40 ~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi-~~ 112 (342)
T 1jx6_A 40 TQRPIKISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIF-TL 112 (342)
T ss_dssp CSSCEEEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEE-CC
T ss_pred cCCceEEEEEecCCcccHHHHHHHHHHHHHHHHcCCeEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEE-eC
Confidence 4566899998433 3345677777777877887776654443210111 011233433 46899988 53
No 144
>4aq4_A SN-glycerol-3-phosphate-binding periplasmic prote; diester-binding protein; HET: G3P; 1.80A {Escherichia coli}
Probab=20.48 E-value=1.3e+02 Score=27.51 Aligned_cols=44 Identities=5% Similarity=-0.044 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhhCCCceeeeeeH---hHHHHHHHh---CCCCccEEecCC
Q 019198 203 LFLESCREVATKYPSIKYNEIIV---DNCCMQLVS---KPEQFDVMVTPN 246 (344)
Q Consensus 203 lf~~~~~eva~eyp~I~~~~~~v---D~~~~~Lv~---~P~~fdVIvt~N 246 (344)
.+.+++.+..++||+|+++.... |....+++. .-...||+...+
T Consensus 21 ~~~~~i~~F~~~~p~i~V~~~~~~~~~~~~~~~~aa~~sg~~PDv~~~~~ 70 (419)
T 4aq4_A 21 EVDSLAQRFNAENPDYKIVPTYKGNYEQNLSAGIAAFRTGNAPAILQVYE 70 (419)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHHHHTTCCCSEEEEEG
T ss_pred HHHHHHHHHHHHCcCeEEEEEeCCCHHHHHHHHHHHHhcCCCCeEEEECc
Confidence 46677777778899999987765 334444443 445679886543
No 145
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=20.41 E-value=3.2e+02 Score=23.62 Aligned_cols=63 Identities=11% Similarity=0.090 Sum_probs=33.3
Q ss_pred CCceEEEEEcCC---CCcHHHHHHHHHHHHHcCCCeeEEEEEeeCCCCCCcHHHHHHH--HhcCeEEEccc
Q 019198 27 GSPRAVTLIPGD---GIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSI--RKNKVCLKGGL 92 (344)
Q Consensus 27 ~~~~~I~vi~GD---GIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~g~~lp~~~~~~~--~~~da~l~G~~ 92 (344)
++.++|+++--| .--.++...+.+.++..|..+.+ .+.... ..--.+.++.+ ++.|+++..+.
T Consensus 14 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~--~~~~~~-~~~~~~~~~~l~~~~vdgiIi~~~ 81 (289)
T 2fep_A 14 KKTTTVGVIIPDISSIFYSELARGIEDIATMYKYNIIL--SNSDQN-MEKELHLLNTMLGKQVDGIVFMGG 81 (289)
T ss_dssp --CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEE--EECTTC-HHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCCCeEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEE--EeCCCC-HHHHHHHHHHHHhCCCCEEEEecC
Confidence 356789988433 23346677777777777766544 232211 00012233333 46888888664
No 146
>1yco_A Branched-chain phosphotransacylase; structural genomics, protein structure initiative, PSI, nysgxrc; 2.40A {Enterococcus faecalis}
Probab=20.38 E-value=4.9e+02 Score=23.69 Aligned_cols=227 Identities=15% Similarity=0.120 Sum_probs=118.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEeeCC------C-------CCCcHHHH---HHHH--hcCeEEEcc
Q 019198 30 RAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD------M-------KRVPQQVL---DSIR--KNKVCLKGG 91 (344)
Q Consensus 30 ~~I~vi~GDGIGpEV~~~~~~vl~~~~~~i~~~~~~~g~~------g-------~~lp~~~~---~~~~--~~da~l~G~ 91 (344)
++|++..|+. +++++++.++++. ..+- .+.+.+|.+ + +..|..+. +.++ ++|++++|.
T Consensus 2 kriv~~e~~d--~~vl~aa~~a~~~-~~~~-~~~iLvG~~~~l~~~~~~~Iv~~~~~~~~a~~a~~lV~~G~aDa~vsG~ 77 (279)
T 1yco_A 2 ITVSIAGGSQ--PEILQLVKKALKE-AEQP-LQFIVFDTNENLDTENLWKYVHCSDEAAVAQEAVSLVATGQAQILLKGI 77 (279)
T ss_dssp EEEEEETCCS--HHHHHHHHHHHHH-CCSC-EEEEEEESSCCCCSSCCSEEEECSSHHHHHHHHHHHHHSTTCSEEEECS
T ss_pred cEEEEecCCC--HHHHHHHHHHHHh-CCCC-CeEEEEECHHHcCCCCCeEEEcCCCCHHHHHHHHHHHHCCCCCEEEeCC
Confidence 5788888853 8999999999998 4300 012233321 0 11122222 3333 699999998
Q ss_pred ccCCCCCCCCchhH-HHHhhcCcEEEEEEeecCCCCCCCcccccEEEEecCCceee--ecccceeeCCEEEEEEEeeHHH
Q 019198 92 LKTPVGGGVSSLNV-QLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIRENTEGEY--SGLEHEVVPGVVESLKVITKFC 168 (344)
Q Consensus 92 ~~~p~~~~~~s~~~-~LR~~ldlyanvRP~~~~pg~~~~~~~vDivIvREnteG~Y--~g~e~~~~~~va~~~~~~Tr~~ 168 (344)
++|+ ..+. .|++.+++ + +| . +...+-++.... .+.+ ....-... -|-+.
T Consensus 78 ~~t~------~~l~~~l~~~ig~----~-----~g-~-r~s~~~~~~~p~--~~~~~l~D~g~N~~---------p~~e~ 129 (279)
T 1yco_A 78 IQTH------TLLKEMLKSEHQL----K-----NK-P-ILSHVAMVELPA--GKTFLLTDCAMNIA---------PTQAT 129 (279)
T ss_dssp SCHH------HHHHHHTCTTTCC----B-----CS-S-SCEEEEEEECSS--SCEEEEECSSSCSS---------CCHHH
T ss_pred CChH------HHHHHHHHHhcCC----C-----CC-C-eEEEEEEEEecC--CCEEEEEeCCCCCC---------CCHHH
Confidence 8762 1111 23334443 1 22 1 111122222111 2221 11111001 14667
Q ss_pred HHHHHHHHHHHHHhcCC--CceEEEe---ccchhhhchHHHHHHHHHH--HhhCCCceee-eeeHhHHHHHHHh------
Q 019198 169 SERIAKYAFEYAYLNYR--KKVTAVH---KANIMKLADGLFLESCREV--ATKYPSIKYN-EIIVDNCCMQLVS------ 234 (344)
Q Consensus 169 ~eRiar~AFe~A~~r~~--~~Vt~v~---KaNvlk~tdglf~~~~~ev--a~eyp~I~~~-~~~vD~~~~~Lv~------ 234 (344)
--.|+..+-++|+.-|- -||-+.. |.|- ....-++..+-+ .++.|++.++ ++-.|++.-.=++
T Consensus 130 l~~ia~~a~~~a~~lGi~~PkVAlLs~~~~g~~---~~~~~~~a~~l~k~l~~~~~~~~dG~i~~D~A~~~~~~~~k~~~ 206 (279)
T 1yco_A 130 LIEIVENAKEVAQKLGLHHPKIALLSAAENFNP---KMPSSVLAKEVTAHFNDQQEATVFGPLSLDLATSEEAVAHKRYS 206 (279)
T ss_dssp HHHHHHHHHHHHHHTTCSSCEEEEECSCSSCCT---TCHHHHHHHHHHHHHSSCSSCEEEEEECHHHHHCHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEeccccCCC---CChHHHHHHHHHHHHHhCCCCEEEeeCcHHhhcCHHHHHhcCCC
Confidence 77889999999998764 3666653 4441 112233333221 2234887775 4566866544444
Q ss_pred CC--CCccEEecCCc-chhhhhhhhhhhcCCCccccCcccCC--CcCccCcCCCChhHHHHHHHH
Q 019198 235 KP--EQFDVMVTPNL-YGNLVSNTAAGIAGGTGVMPGAGNVG--NEKVVEQKKANPVALLLSSAM 294 (344)
Q Consensus 235 ~P--~~fdVIvt~Nl-fGDIlSDlaa~l~GglGl~pSa~nig--APdiaGk~iANP~a~Ils~am 294 (344)
++ ++-||+||||+ =|||+-=+.-.+.|+ -..| . -+| .|=+.-..-++.-+.+.|.++
T Consensus 207 s~~~G~adVlV~Pd~~aGNi~~K~~~~~~~~-~~gg-i-llG~~~pV~~~sr~~~~~~i~nai~~ 268 (279)
T 1yco_A 207 GPIMGDADILVVPTIDVGNCLYKSLTLFGHA-KVGG-T-IVGTKVPVVLTSRSDSTESKFHSLRF 268 (279)
T ss_dssp SSCSSCCSEEECSSHHHHHHHHHHHHHHSCC-EEEE-E-EESBSSCEEECCTTSCHHHHHHHHHH
T ss_pred CccCCCCCEEEECCchHHHHHHHHHHHhCCC-eEee-e-eecCCccEEECCCCCCHHHHHHHHHH
Confidence 44 36899999999 599988887666544 2222 3 333 444444455566555555544
No 147
>1lxj_A YBL001C, hypothetical 11.5KDA protein in HTB2-NTH2 interge region; hypothetical protein, HTB2-NTH2 intergenic region; 1.80A {Saccharomyces cerevisiae} SCOP: d.58.48.1
Probab=20.31 E-value=76 Score=24.97 Aligned_cols=55 Identities=11% Similarity=0.022 Sum_probs=33.0
Q ss_pred EEEEEc-CCC--CcHHHHHHHHHHHHHcCCCeeEEEEEeeCC--CCCCcHHHHHHHHhcCeEEE
Q 019198 31 AVTLIP-GDG--IGPLVTNAVEQVMEAMHAPIYFEKYEVHGD--MKRVPQQVLDSIRKNKVCLK 89 (344)
Q Consensus 31 ~I~vi~-GDG--IGpEV~~~~~~vl~~~~~~i~~~~~~~g~~--g~~lp~~~~~~~~~~da~l~ 89 (344)
-+.++| |.| -=.+.++++.++|+..|++.+. .+.|.. |+ .++.++.++++.-.++
T Consensus 9 e~sv~Plg~~~~svs~~Va~~i~~i~~sGl~y~~--~pm~T~IEGe--~devm~vv~~~~e~~~ 68 (104)
T 1lxj_A 9 DVCMVPIGTDSASISDFVALIEKKIRESPLKSTL--HSAGTTIEGP--WDDVMGLIGEIHEYGH 68 (104)
T ss_dssp EEEEEEESCSCSCCHHHHHHHHHHHHTSSSEEEE--ETTEEEEEEE--HHHHHHHHHHHHHHHH
T ss_pred EEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEe--CCCccEEEcC--HHHHHHHHHHHHHHHH
Confidence 456676 432 1234566677888877765543 333332 55 7888888887666554
No 148
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=20.20 E-value=3.5e+02 Score=21.87 Aligned_cols=59 Identities=8% Similarity=-0.001 Sum_probs=30.7
Q ss_pred cCCCceEEEeccchhhhchHHHHHHHHHHHhh--CCCceeeeeeHhHHHHHHHhCCCCccEEecCCcchh
Q 019198 183 NYRKKVTAVHKANIMKLADGLFLESCREVATK--YPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGN 250 (344)
Q Consensus 183 r~~~~Vt~v~KaNvlk~tdglf~~~~~eva~e--yp~I~~~~~~vD~~~~~Lv~~P~~fdVIvt~NlfGD 250 (344)
++..+|+.+|..--+ .+.+++-++. .+.+++.+.-+.....+ ..++.||+|++..-|..
T Consensus 65 ~~~~~v~~vD~~~~~-------~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~~~~fD~i~~~~p~~~ 125 (189)
T 3p9n_A 65 RGAASVLFVESDQRS-------AAVIARNIEALGLSGATLRRGAVAAVVAA--GTTSPVDLVLADPPYNV 125 (189)
T ss_dssp TTCSEEEEEECCHHH-------HHHHHHHHHHHTCSCEEEEESCHHHHHHH--CCSSCCSEEEECCCTTS
T ss_pred CCCCeEEEEECCHHH-------HHHHHHHHHHcCCCceEEEEccHHHHHhh--ccCCCccEEEECCCCCc
Confidence 345689999864322 2333333222 23455444333222111 13678999998766654
Done!