Query 019200
Match_columns 344
No_of_seqs 160 out of 1511
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 07:31:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019200.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019200hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 3.1E-69 6.8E-74 498.2 33.4 306 8-317 1-310 (316)
2 KOG1575 Voltage-gated shaker-l 100.0 5.8E-68 1.3E-72 480.1 32.3 317 5-326 9-335 (336)
3 TIGR01293 Kv_beta voltage-depe 100.0 4.1E-62 9E-67 454.0 32.5 299 10-315 1-317 (317)
4 PRK09912 L-glyceraldehyde 3-ph 100.0 8.7E-62 1.9E-66 456.4 33.3 309 4-317 9-334 (346)
5 PRK10625 tas putative aldo-ket 100.0 1E-61 2.3E-66 456.5 33.8 304 8-316 1-339 (346)
6 COG0656 ARA1 Aldo/keto reducta 100.0 3.3E-60 7.1E-65 422.2 27.2 257 8-318 3-266 (280)
7 PLN02587 L-galactose dehydroge 100.0 1.3E-59 2.8E-64 436.8 31.5 287 10-317 1-301 (314)
8 cd06660 Aldo_ket_red Aldo-keto 100.0 8.1E-58 1.8E-62 419.7 32.2 281 10-314 1-285 (285)
9 PRK10376 putative oxidoreducta 100.0 3.2E-57 7E-62 415.9 30.9 272 11-316 10-288 (290)
10 PF00248 Aldo_ket_red: Aldo/ke 100.0 3.3E-57 7.1E-62 415.2 25.9 276 22-315 1-282 (283)
11 PRK11172 dkgB 2,5-diketo-D-glu 100.0 6.8E-55 1.5E-59 395.9 28.3 246 18-317 1-253 (267)
12 PRK14863 bifunctional regulato 100.0 2.5E-55 5.4E-60 402.8 24.5 279 17-325 2-290 (292)
13 KOG1577 Aldo/keto reductase fa 100.0 3.4E-54 7.4E-59 383.5 25.5 258 10-318 6-287 (300)
14 COG4989 Predicted oxidoreducta 100.0 1.1E-53 2.5E-58 364.3 23.1 285 8-317 1-294 (298)
15 PRK11565 dkgA 2,5-diketo-D-glu 100.0 2.1E-52 4.6E-57 380.8 28.7 254 10-318 6-264 (275)
16 KOG1576 Predicted oxidoreducta 100.0 2.7E-52 5.8E-57 358.4 23.4 283 6-305 20-310 (342)
17 COG1453 Predicted oxidoreducta 100.0 2.5E-49 5.5E-54 355.7 24.7 271 8-315 1-284 (391)
18 KOG3023 Glutamate-cysteine lig 97.9 3.1E-05 6.8E-10 67.0 6.3 71 140-211 155-227 (285)
19 cd03319 L-Ala-DL-Glu_epimerase 92.8 5.1 0.00011 37.2 14.9 154 39-216 134-291 (316)
20 cd03174 DRE_TIM_metallolyase D 89.4 6 0.00013 35.4 11.5 107 103-211 14-135 (265)
21 PRK08392 hypothetical protein; 87.9 17 0.00038 31.6 14.6 151 42-209 15-179 (215)
22 TIGR02370 pyl_corrinoid methyl 84.9 13 0.00027 32.1 10.3 145 39-205 10-164 (197)
23 cd00739 DHPS DHPS subgroup of 82.7 25 0.00054 31.7 11.6 101 105-211 21-127 (257)
24 cd02070 corrinoid_protein_B12- 82.0 30 0.00064 29.8 11.5 149 39-209 9-170 (201)
25 PRK07535 methyltetrahydrofolat 81.1 41 0.00088 30.4 12.4 135 105-269 22-158 (261)
26 PRK07945 hypothetical protein; 80.4 52 0.0011 30.9 14.9 107 41-161 111-227 (335)
27 cd03316 MR_like Mandelate race 79.7 55 0.0012 30.8 14.6 153 39-212 139-299 (357)
28 PRK08609 hypothetical protein; 79.1 77 0.0017 32.2 16.1 151 43-208 351-522 (570)
29 cd00423 Pterin_binding Pterin 79.0 42 0.00091 30.1 11.9 102 105-212 21-128 (258)
30 PRK10550 tRNA-dihydrouridine s 77.7 60 0.0013 30.1 13.5 133 39-184 73-224 (312)
31 PF07021 MetW: Methionine bios 76.9 6.1 0.00013 33.8 5.4 151 44-217 4-172 (193)
32 PRK13958 N-(5'-phosphoribosyl) 75.4 9.8 0.00021 33.1 6.5 68 117-186 16-84 (207)
33 COG1748 LYS9 Saccharopine dehy 74.2 21 0.00046 34.2 8.8 81 41-137 79-159 (389)
34 COG2355 Zn-dependent dipeptida 73.8 38 0.00082 31.4 10.0 106 42-163 150-260 (313)
35 PRK10558 alpha-dehydro-beta-de 73.3 54 0.0012 29.5 10.9 68 146-214 9-79 (256)
36 PRK13796 GTPase YqeH; Provisio 72.3 72 0.0016 30.3 12.1 120 38-169 54-176 (365)
37 cd02930 DCR_FMN 2,4-dienoyl-Co 70.9 95 0.0021 29.3 13.1 38 146-183 267-305 (353)
38 COG1140 NarY Nitrate reductase 70.2 2.4 5.2E-05 39.8 1.4 55 152-206 262-317 (513)
39 cd02069 methionine_synthase_B1 69.6 76 0.0017 27.6 10.8 145 39-205 13-168 (213)
40 PRK00164 moaA molybdenum cofac 68.9 99 0.0021 28.7 14.4 149 38-209 49-228 (331)
41 PRK04452 acetyl-CoA decarbonyl 68.4 1E+02 0.0022 28.7 12.7 96 116-214 83-185 (319)
42 PRK10128 2-keto-3-deoxy-L-rham 67.7 96 0.0021 28.1 11.2 65 147-213 9-77 (267)
43 cd03315 MLE_like Muconate lact 67.6 92 0.002 27.9 16.0 156 39-217 85-244 (265)
44 PRK01222 N-(5'-phosphoribosyl) 67.4 17 0.00037 31.6 6.2 68 117-186 18-86 (210)
45 cd04740 DHOD_1B_like Dihydroor 66.6 1E+02 0.0022 28.1 14.3 151 39-205 100-286 (296)
46 PRK09613 thiH thiamine biosynt 66.2 1E+02 0.0022 30.5 11.9 171 38-210 28-238 (469)
47 TIGR03822 AblA_like_2 lysine-2 65.8 1.2E+02 0.0025 28.3 13.6 109 106-217 120-240 (321)
48 cd00308 enolase_like Enolase-s 64.8 54 0.0012 28.6 9.0 87 126-216 120-208 (229)
49 COG0135 TrpF Phosphoribosylant 64.6 47 0.001 28.9 8.2 84 117-209 17-103 (208)
50 PRK07379 coproporphyrinogen II 64.5 44 0.00096 32.2 9.0 60 105-166 179-255 (400)
51 PRK06294 coproporphyrinogen II 64.3 48 0.001 31.5 9.1 61 104-166 166-243 (370)
52 cd07944 DRE_TIM_HOA_like 4-hyd 63.4 95 0.0021 28.0 10.5 107 101-210 13-128 (266)
53 PF03102 NeuB: NeuB family; I 63.4 53 0.0011 29.3 8.6 111 38-167 53-183 (241)
54 PF00682 HMGL-like: HMGL-like 63.3 60 0.0013 28.5 9.1 162 38-214 11-193 (237)
55 PRK14457 ribosomal RNA large s 62.7 1.4E+02 0.003 28.2 14.7 136 81-217 99-266 (345)
56 PRK05660 HemN family oxidoredu 61.9 57 0.0012 31.1 9.2 61 104-166 170-243 (378)
57 cd07943 DRE_TIM_HOA 4-hydroxy- 61.6 1.2E+02 0.0026 27.2 10.8 105 104-210 18-131 (263)
58 TIGR00190 thiC thiamine biosyn 61.4 70 0.0015 30.7 9.2 144 39-210 75-222 (423)
59 TIGR03239 GarL 2-dehydro-3-deo 61.1 1.2E+02 0.0027 27.1 10.6 65 148-214 4-72 (249)
60 TIGR01928 menC_lowGC/arch o-su 59.8 1.5E+02 0.0032 27.6 16.5 154 39-217 132-287 (324)
61 PRK05692 hydroxymethylglutaryl 59.0 30 0.00066 31.7 6.5 103 104-209 22-138 (287)
62 PRK00730 rnpA ribonuclease P; 58.9 53 0.0012 26.5 7.0 63 81-153 46-110 (138)
63 cd00740 MeTr MeTr subgroup of 58.0 1.4E+02 0.0031 26.7 13.4 104 104-213 22-128 (252)
64 PRK09058 coproporphyrinogen II 57.3 54 0.0012 32.1 8.3 29 104-133 226-254 (449)
65 PRK08446 coproporphyrinogen II 57.0 1.3E+02 0.0028 28.4 10.6 60 105-166 162-231 (350)
66 COG2949 SanA Uncharacterized m 57.0 98 0.0021 26.9 8.6 99 108-212 76-181 (235)
67 PRK09856 fructoselysine 3-epim 56.2 1.2E+02 0.0026 27.0 10.0 119 110-264 15-144 (275)
68 TIGR02026 BchE magnesium-proto 55.9 1.5E+02 0.0033 29.4 11.3 66 138-205 320-392 (497)
69 PRK05414 urocanate hydratase; 55.8 27 0.00059 34.4 5.7 126 45-184 116-266 (556)
70 TIGR01502 B_methylAsp_ase meth 55.7 73 0.0016 30.9 8.7 86 127-213 265-357 (408)
71 TIGR01228 hutU urocanate hydra 55.7 27 0.00058 34.3 5.6 127 45-185 107-258 (545)
72 PRK06361 hypothetical protein; 55.6 1.3E+02 0.0029 25.7 18.6 187 41-273 10-201 (212)
73 TIGR01278 DPOR_BchB light-inde 55.1 2.3E+02 0.005 28.3 14.6 100 69-182 69-193 (511)
74 PRK13352 thiamine biosynthesis 55.1 1E+02 0.0022 29.7 9.3 145 39-211 75-226 (431)
75 cd03322 rpsA The starvation se 54.4 66 0.0014 30.4 8.2 71 143-213 202-274 (361)
76 cd03314 MAL Methylaspartate am 54.4 2E+02 0.0043 27.5 11.3 84 129-212 230-320 (369)
77 PF13378 MR_MLE_C: Enolase C-t 54.3 23 0.0005 27.0 4.3 54 162-216 3-57 (111)
78 smart00642 Aamy Alpha-amylase 54.1 27 0.00058 29.1 4.9 22 194-215 73-94 (166)
79 COG1801 Uncharacterized conser 53.9 1.7E+02 0.0036 26.5 10.2 108 22-138 4-116 (263)
80 COG0159 TrpA Tryptophan syntha 52.8 1.8E+02 0.0039 26.4 13.4 18 194-211 137-154 (265)
81 TIGR00735 hisF imidazoleglycer 52.7 1.7E+02 0.0037 26.1 11.8 89 116-207 162-253 (254)
82 COG1151 6Fe-6S prismane cluste 52.6 69 0.0015 32.1 7.9 125 108-267 360-493 (576)
83 PF05913 DUF871: Bacterial pro 52.2 1E+02 0.0022 29.3 8.9 211 39-298 12-235 (357)
84 cd00408 DHDPS-like Dihydrodipi 52.1 1.8E+02 0.0039 26.2 16.5 133 37-188 14-161 (281)
85 PRK13347 coproporphyrinogen II 51.7 78 0.0017 31.1 8.4 61 104-166 215-291 (453)
86 cd03323 D-glucarate_dehydratas 50.7 2.4E+02 0.0051 27.1 14.8 151 39-214 168-322 (395)
87 PF14871 GHL6: Hypothetical gl 50.6 29 0.00064 27.8 4.4 25 190-214 43-67 (132)
88 COG2874 FlaH Predicted ATPases 50.2 72 0.0016 28.0 6.8 114 41-163 43-167 (235)
89 COG0218 Predicted GTPase [Gene 50.0 1.7E+02 0.0037 25.3 10.4 101 40-153 90-198 (200)
90 COG1121 ZnuC ABC-type Mn/Zn tr 49.6 89 0.0019 28.1 7.6 67 105-174 112-207 (254)
91 PRK12928 lipoyl synthase; Prov 49.5 2.1E+02 0.0046 26.2 10.6 76 138-214 185-281 (290)
92 TIGR00216 ispH_lytB (E)-4-hydr 49.4 85 0.0019 28.7 7.6 117 145-296 145-273 (280)
93 PRK01045 ispH 4-hydroxy-3-meth 49.1 78 0.0017 29.2 7.4 108 154-296 156-275 (298)
94 PLN02746 hydroxymethylglutaryl 49.0 62 0.0014 30.6 6.9 100 104-209 64-180 (347)
95 cd03318 MLE Muconate Lactonizi 48.9 99 0.0021 29.2 8.5 73 143-215 227-301 (365)
96 PRK08195 4-hyroxy-2-oxovalerat 48.8 2.1E+02 0.0046 26.8 10.5 108 101-210 18-134 (337)
97 PRK05628 coproporphyrinogen II 47.8 1.4E+02 0.003 28.3 9.3 28 104-132 171-198 (375)
98 TIGR02534 mucon_cyclo muconate 47.4 59 0.0013 30.8 6.7 73 144-216 227-301 (368)
99 cd01974 Nitrogenase_MoFe_beta 47.4 2.7E+02 0.0059 27.0 11.4 108 62-182 65-192 (435)
100 PRK13803 bifunctional phosphor 47.0 1.1E+02 0.0024 31.4 8.8 69 119-187 20-89 (610)
101 TIGR03217 4OH_2_O_val_ald 4-hy 46.7 2.5E+02 0.0055 26.3 10.9 108 101-210 17-133 (333)
102 PF11020 DUF2610: Domain of un 46.7 46 0.001 24.0 4.3 28 245-272 48-75 (82)
103 PF00682 HMGL-like: HMGL-like 46.5 1.3E+02 0.0027 26.4 8.3 98 104-207 10-124 (237)
104 PRK15072 bifunctional D-altron 46.4 1.4E+02 0.0031 28.7 9.2 70 144-213 246-317 (404)
105 PLN00191 enolase 46.4 1.7E+02 0.0036 28.9 9.6 97 105-210 295-394 (457)
106 PLN02363 phosphoribosylanthran 45.7 75 0.0016 28.6 6.6 75 106-186 56-131 (256)
107 PF11242 DUF2774: Protein of u 45.5 29 0.00063 23.7 2.9 22 253-274 15-36 (63)
108 PRK00208 thiG thiazole synthas 45.5 2.3E+02 0.0049 25.4 14.7 106 103-210 71-181 (250)
109 PF07287 DUF1446: Protein of u 45.1 80 0.0017 30.0 7.0 90 143-264 11-100 (362)
110 PRK14461 ribosomal RNA large s 45.1 1.9E+02 0.0041 27.6 9.4 91 128-218 231-355 (371)
111 PRK12360 4-hydroxy-3-methylbut 44.6 1.3E+02 0.0029 27.5 8.1 114 147-296 150-274 (281)
112 PRK09427 bifunctional indole-3 44.4 67 0.0015 31.6 6.6 66 118-187 273-339 (454)
113 cd03325 D-galactonate_dehydrat 44.2 1.3E+02 0.0028 28.3 8.4 69 143-211 215-285 (352)
114 COG1168 MalY Bifunctional PLP- 44.2 2.9E+02 0.0064 26.4 11.8 151 39-220 39-207 (388)
115 COG2102 Predicted ATPases of P 44.0 71 0.0015 28.0 5.9 101 138-266 73-177 (223)
116 TIGR03821 AblA_like_1 lysine-2 43.5 2.8E+02 0.006 25.8 13.2 109 106-217 126-246 (321)
117 PRK07259 dihydroorotate dehydr 43.4 2.6E+02 0.0056 25.5 12.9 153 39-205 102-289 (301)
118 TIGR00126 deoC deoxyribose-pho 42.8 2.3E+02 0.0049 24.7 9.2 72 39-125 130-205 (211)
119 PRK06424 transcription factor; 42.7 78 0.0017 25.8 5.7 80 194-274 23-109 (144)
120 PRK06582 coproporphyrinogen II 42.4 1.5E+02 0.0033 28.4 8.6 61 104-166 173-250 (390)
121 COG4130 Predicted sugar epimer 42.1 1.9E+02 0.0042 25.4 8.1 81 164-263 49-136 (272)
122 PRK14017 galactonate dehydrata 41.8 1.3E+02 0.0029 28.6 8.2 70 144-213 217-288 (382)
123 COG4943 Predicted signal trans 41.7 2.4E+02 0.0052 27.9 9.6 127 69-210 340-477 (524)
124 PRK08599 coproporphyrinogen II 41.4 1.7E+02 0.0036 27.8 8.8 60 104-165 163-239 (377)
125 PRK00077 eno enolase; Provisio 40.9 2.5E+02 0.0055 27.3 10.0 96 105-209 261-361 (425)
126 cd01965 Nitrogenase_MoFe_beta_ 40.7 3.5E+02 0.0075 26.2 12.1 108 63-183 62-188 (428)
127 PF05690 ThiG: Thiazole biosyn 40.6 2.7E+02 0.0058 24.9 12.0 168 21-211 9-182 (247)
128 cd04731 HisF The cyclase subun 40.6 2.5E+02 0.0055 24.6 10.5 85 116-203 156-243 (243)
129 PRK05799 coproporphyrinogen II 40.5 2.1E+02 0.0044 27.1 9.2 28 104-132 162-189 (374)
130 COG2987 HutU Urocanate hydrata 40.3 57 0.0012 31.7 5.1 108 67-184 148-266 (561)
131 cd07943 DRE_TIM_HOA 4-hydroxy- 40.2 2.7E+02 0.0059 24.9 16.2 158 36-214 17-197 (263)
132 smart00052 EAL Putative diguan 40.0 2E+02 0.0043 24.6 8.5 100 108-211 99-210 (241)
133 cd00405 PRAI Phosphoribosylant 40.0 1.6E+02 0.0035 25.1 7.8 45 117-168 68-112 (203)
134 COG0635 HemN Coproporphyrinoge 40.0 3.6E+02 0.0078 26.2 16.1 108 21-166 149-276 (416)
135 TIGR01496 DHPS dihydropteroate 39.9 2.8E+02 0.0061 24.9 13.5 99 105-211 20-125 (257)
136 TIGR00676 fadh2 5,10-methylene 39.8 2.9E+02 0.0062 25.0 13.6 155 41-218 15-193 (272)
137 cd01301 rDP_like renal dipepti 39.1 1.8E+02 0.004 26.9 8.3 107 41-163 154-263 (309)
138 TIGR02026 BchE magnesium-proto 38.8 3.8E+02 0.0082 26.6 11.1 106 104-213 221-345 (497)
139 COG0422 ThiC Thiamine biosynth 38.7 3.6E+02 0.0078 25.8 10.3 146 39-211 76-224 (432)
140 cd03321 mandelate_racemase Man 38.6 3.4E+02 0.0074 25.5 13.2 151 39-209 141-293 (355)
141 TIGR01060 eno phosphopyruvate 38.3 3.1E+02 0.0068 26.6 10.2 96 105-209 262-362 (425)
142 COG1751 Uncharacterized conser 38.3 1.2E+02 0.0026 25.0 6.0 76 35-123 8-84 (186)
143 COG3172 NadR Predicted ATPase/ 38.2 1.8E+02 0.0038 24.5 7.0 97 53-154 79-185 (187)
144 KOG0023 Alcohol dehydrogenase, 38.0 2.1E+02 0.0045 26.9 8.2 148 6-207 172-324 (360)
145 PRK09061 D-glutamate deacylase 37.8 2.9E+02 0.0063 27.6 10.1 114 43-164 171-285 (509)
146 PF02401 LYTB: LytB protein; 37.7 1.1E+02 0.0024 28.0 6.5 115 146-296 145-274 (281)
147 cd07948 DRE_TIM_HCS Saccharomy 37.6 2.4E+02 0.0053 25.4 8.7 102 102-210 16-131 (262)
148 cd03327 MR_like_2 Mandelate ra 37.6 2E+02 0.0044 26.8 8.6 69 143-211 210-280 (341)
149 PRK14459 ribosomal RNA large s 37.3 2.2E+02 0.0048 27.2 8.7 90 128-217 241-361 (373)
150 PRK05588 histidinol-phosphatas 37.3 3E+02 0.0064 24.4 16.2 104 41-160 16-143 (255)
151 TIGR02090 LEU1_arch isopropylm 37.2 3.6E+02 0.0078 25.5 10.2 26 37-62 18-43 (363)
152 PLN02428 lipoic acid synthase 37.0 3.7E+02 0.008 25.5 11.5 157 38-214 130-324 (349)
153 PLN02389 biotin synthase 36.5 3.9E+02 0.0084 25.6 11.3 101 38-155 116-227 (379)
154 PF00809 Pterin_bind: Pterin b 36.2 1.3E+02 0.0028 26.0 6.6 89 119-213 29-125 (210)
155 TIGR01290 nifB nitrogenase cof 36.2 4.2E+02 0.0092 25.9 12.6 83 103-190 58-146 (442)
156 PRK14465 ribosomal RNA large s 35.9 3.8E+02 0.0083 25.3 14.7 93 82-174 104-207 (342)
157 PRK00507 deoxyribose-phosphate 35.9 2E+02 0.0044 25.2 7.7 76 38-125 133-209 (221)
158 TIGR02311 HpaI 2,4-dihydroxyhe 35.8 3.2E+02 0.0069 24.4 11.2 65 147-212 3-70 (249)
159 COG3215 PilZ Tfp pilus assembl 35.7 1.3E+02 0.0029 22.8 5.4 80 39-120 18-106 (117)
160 TIGR03247 glucar-dehydr glucar 35.6 2.2E+02 0.0048 27.9 8.6 86 128-213 252-338 (441)
161 TIGR03597 GTPase_YqeH ribosome 35.5 2.4E+02 0.0052 26.7 8.8 120 38-169 48-170 (360)
162 TIGR00538 hemN oxygen-independ 35.3 2.4E+02 0.0052 27.6 9.0 60 105-166 215-290 (455)
163 PRK07328 histidinol-phosphatas 35.1 3.3E+02 0.0072 24.4 14.5 109 42-162 19-161 (269)
164 PRK12581 oxaloacetate decarbox 34.9 4.6E+02 0.01 25.9 13.3 111 39-165 103-215 (468)
165 PF01175 Urocanase: Urocanase; 34.9 46 0.00099 32.9 3.7 128 44-185 105-257 (546)
166 TIGR01927 menC_gamma/gm+ o-suc 34.7 3.2E+02 0.0069 25.1 9.3 73 145-217 196-270 (307)
167 COG4464 CapC Capsular polysacc 34.6 1.6E+02 0.0036 25.8 6.6 33 34-67 14-46 (254)
168 PRK08208 coproporphyrinogen II 34.5 3.3E+02 0.0072 26.4 9.7 61 104-166 204-275 (430)
169 cd02810 DHOD_DHPD_FMN Dihydroo 34.1 3.5E+02 0.0076 24.4 12.2 131 39-184 109-272 (289)
170 PF00072 Response_reg: Respons 33.5 1.7E+02 0.0037 21.3 6.2 68 117-187 35-104 (112)
171 COG2185 Sbm Methylmalonyl-CoA 33.2 2.2E+02 0.0048 23.2 6.8 57 158-218 19-77 (143)
172 PRK13352 thiamine biosynthesis 33.0 1.2E+02 0.0026 29.3 6.0 120 142-296 122-246 (431)
173 cd02932 OYE_YqiM_FMN Old yello 33.0 4.1E+02 0.0088 24.7 13.5 94 82-183 219-319 (336)
174 PTZ00081 enolase; Provisional 32.7 3.7E+02 0.008 26.3 9.6 97 105-210 281-382 (439)
175 PF01053 Cys_Met_Meta_PP: Cys/ 32.6 4.5E+02 0.0098 25.2 10.4 80 141-220 105-187 (386)
176 PRK07003 DNA polymerase III su 32.0 6.5E+02 0.014 26.8 13.3 96 105-206 99-197 (830)
177 PRK05283 deoxyribose-phosphate 31.9 2.4E+02 0.0053 25.4 7.6 78 39-127 144-227 (257)
178 PF04476 DUF556: Protein of un 31.7 3.7E+02 0.008 23.9 10.7 148 48-207 14-183 (235)
179 PRK07531 bifunctional 3-hydrox 31.5 3.9E+02 0.0085 26.5 9.8 125 124-273 79-218 (495)
180 TIGR00048 radical SAM enzyme, 31.0 2.6E+02 0.0057 26.5 8.1 106 116-221 206-339 (355)
181 TIGR00035 asp_race aspartate r 30.9 2.1E+02 0.0045 25.0 7.1 65 103-168 12-88 (229)
182 KOG0059 Lipid exporter ABCA1 a 30.6 2.5E+02 0.0055 30.2 8.8 72 104-177 669-769 (885)
183 PRK09249 coproporphyrinogen II 30.5 3.4E+02 0.0074 26.5 9.2 26 105-131 215-240 (453)
184 cd06543 GH18_PF-ChiA-like PF-C 30.5 4.3E+02 0.0093 24.3 12.3 186 16-216 66-265 (294)
185 cd01948 EAL EAL domain. This d 30.5 3.4E+02 0.0074 23.1 8.9 102 107-211 97-209 (240)
186 PLN02522 ATP citrate (pro-S)-l 30.5 87 0.0019 32.0 5.0 85 67-158 234-325 (608)
187 PRK01313 rnpA ribonuclease P; 30.4 2.7E+02 0.0059 22.2 6.9 62 81-152 47-113 (129)
188 PRK14468 ribosomal RNA large s 30.3 4.7E+02 0.01 24.6 14.9 95 81-175 91-199 (343)
189 COG2055 Malate/L-lactate dehyd 30.2 3E+02 0.0066 26.0 8.1 88 104-209 5-113 (349)
190 TIGR00677 fadh2_euk methylenet 30.2 4.2E+02 0.0092 24.1 13.7 157 41-218 16-197 (281)
191 PRK03031 rnpA ribonuclease P; 30.1 2.6E+02 0.0057 21.8 6.8 49 105-153 62-114 (122)
192 PRK15108 biotin synthase; Prov 29.9 4.7E+02 0.01 24.5 10.6 108 105-216 76-196 (345)
193 PRK02901 O-succinylbenzoate sy 29.6 4.4E+02 0.0095 24.6 9.3 72 144-217 173-245 (327)
194 PRK04390 rnpA ribonuclease P; 29.6 2.7E+02 0.0059 21.7 7.1 49 105-153 59-110 (120)
195 PLN02540 methylenetetrahydrofo 29.6 6.2E+02 0.013 25.8 15.4 152 41-209 15-202 (565)
196 TIGR03822 AblA_like_2 lysine-2 29.5 4.6E+02 0.01 24.3 13.1 103 38-155 119-228 (321)
197 PRK06740 histidinol-phosphatas 29.5 4.7E+02 0.01 24.4 11.5 23 41-63 61-83 (331)
198 PHA02128 hypothetical protein 29.4 1.6E+02 0.0035 22.5 5.1 70 141-210 60-150 (151)
199 PF09989 DUF2229: CoA enzyme a 29.3 1.3E+02 0.0027 26.5 5.3 27 184-210 192-218 (221)
200 PRK12331 oxaloacetate decarbox 29.1 5.6E+02 0.012 25.2 11.3 102 104-209 22-141 (448)
201 PRK14465 ribosomal RNA large s 29.0 4.7E+02 0.01 24.6 9.4 90 128-217 215-331 (342)
202 COG2069 CdhD CO dehydrogenase/ 29.0 4.7E+02 0.01 24.2 10.6 94 116-214 158-261 (403)
203 cd04728 ThiG Thiazole synthase 28.7 4.3E+02 0.0093 23.7 14.9 106 103-210 71-181 (248)
204 COG0761 lytB 4-Hydroxy-3-methy 28.5 3.3E+02 0.0071 25.0 7.8 120 142-296 144-277 (294)
205 PRK03459 rnpA ribonuclease P; 28.3 2.9E+02 0.0064 21.6 6.8 63 81-153 48-114 (122)
206 PF01402 RHH_1: Ribbon-helix-h 28.3 98 0.0021 18.4 3.2 22 248-269 8-29 (39)
207 COG4555 NatA ABC-type Na+ tran 28.1 2.8E+02 0.0061 24.4 6.9 71 103-175 103-202 (245)
208 cd05007 SIS_Etherase N-acetylm 28.1 4.4E+02 0.0095 23.6 11.0 123 41-174 36-164 (257)
209 PF01118 Semialdhyde_dh: Semia 28.0 87 0.0019 24.2 3.7 28 39-66 75-102 (121)
210 TIGR03471 HpnJ hopanoid biosyn 28.0 5E+02 0.011 25.4 9.9 155 39-205 228-392 (472)
211 PRK14466 ribosomal RNA large s 28.0 2.9E+02 0.0063 26.1 7.7 102 82-187 102-215 (345)
212 PRK08776 cystathionine gamma-s 27.9 2.7E+02 0.0059 26.8 7.8 75 142-216 111-187 (405)
213 cd03320 OSBS o-Succinylbenzoat 27.7 3E+02 0.0066 24.5 7.7 73 143-216 166-239 (263)
214 COG2159 Predicted metal-depend 27.7 2.7E+02 0.0059 25.5 7.4 94 118-213 55-166 (293)
215 cd01297 D-aminoacylase D-amino 27.4 5.6E+02 0.012 24.6 11.4 102 42-155 168-275 (415)
216 PF00356 LacI: Bacterial regul 27.4 81 0.0018 20.1 2.8 42 254-301 2-43 (46)
217 TIGR01182 eda Entner-Doudoroff 27.3 2.4E+02 0.0053 24.4 6.6 88 106-209 18-106 (204)
218 PRK12570 N-acetylmuramic acid- 27.2 4.9E+02 0.011 23.9 10.0 57 115-174 117-173 (296)
219 PRK12928 lipoyl synthase; Prov 27.2 4.9E+02 0.011 23.8 9.6 103 104-209 86-208 (290)
220 PRK08255 salicylyl-CoA 5-hydro 27.1 7.6E+02 0.017 26.0 13.1 158 37-206 540-737 (765)
221 PF00697 PRAI: N-(5'phosphorib 27.0 65 0.0014 27.6 3.1 82 117-208 14-96 (197)
222 PRK00499 rnpA ribonuclease P; 27.0 2.9E+02 0.0064 21.2 6.8 63 81-153 38-104 (114)
223 TIGR00238 KamA family protein. 26.7 5.3E+02 0.011 24.1 13.3 107 107-217 144-263 (331)
224 CHL00076 chlB photochlorophyll 26.6 6.6E+02 0.014 25.1 14.1 89 126-214 117-248 (513)
225 TIGR00423 radical SAM domain p 26.5 5.1E+02 0.011 23.8 10.2 48 104-154 35-82 (309)
226 PRK14462 ribosomal RNA large s 26.4 5.6E+02 0.012 24.3 13.6 138 65-221 168-344 (356)
227 PRK09454 ugpQ cytoplasmic glyc 26.4 4.5E+02 0.0098 23.2 14.6 22 39-60 20-41 (249)
228 cd07937 DRE_TIM_PC_TC_5S Pyruv 26.0 4.9E+02 0.011 23.5 16.4 168 36-214 16-204 (275)
229 TIGR00381 cdhD CO dehydrogenas 26.0 6E+02 0.013 24.4 11.9 105 108-217 128-253 (389)
230 PF10668 Phage_terminase: Phag 26.0 1.3E+02 0.0029 20.5 3.7 17 253-269 24-40 (60)
231 PRK14454 ribosomal RNA large s 25.9 5.6E+02 0.012 24.1 14.2 134 82-217 100-262 (342)
232 PTZ00413 lipoate synthase; Pro 25.7 6.1E+02 0.013 24.4 11.9 160 37-215 176-373 (398)
233 PRK00087 4-hydroxy-3-methylbut 25.6 2.8E+02 0.0061 28.7 7.8 117 147-299 147-275 (647)
234 PRK06015 keto-hydroxyglutarate 25.5 2.8E+02 0.0061 23.9 6.7 88 106-209 14-102 (201)
235 PRK08084 DNA replication initi 25.5 2.5E+02 0.0054 24.6 6.6 44 126-169 98-145 (235)
236 COG3623 SgaU Putative L-xylulo 25.1 1.3E+02 0.0029 26.7 4.5 76 15-91 65-155 (287)
237 PRK09389 (R)-citramalate synth 24.8 7E+02 0.015 24.8 10.2 26 37-62 20-45 (488)
238 PRK00912 ribonuclease P protei 24.8 4.7E+02 0.01 22.8 13.9 139 41-209 16-172 (237)
239 COG2089 SpsE Sialic acid synth 24.8 5.9E+02 0.013 23.9 11.7 116 38-172 87-222 (347)
240 TIGR01430 aden_deam adenosine 24.8 5.5E+02 0.012 23.6 13.7 104 106-214 138-242 (324)
241 PRK14460 ribosomal RNA large s 24.6 6.1E+02 0.013 24.0 15.7 175 27-221 119-338 (354)
242 COG2040 MHT1 Homocysteine/sele 24.5 5.6E+02 0.012 23.6 12.0 168 39-212 41-241 (300)
243 PF14502 HTH_41: Helix-turn-he 24.5 78 0.0017 20.5 2.3 29 252-280 7-37 (48)
244 PF01244 Peptidase_M19: Membra 24.4 1.5E+02 0.0033 27.6 5.2 107 41-163 160-271 (320)
245 TIGR03849 arch_ComA phosphosul 24.0 2.2E+02 0.0047 25.4 5.8 96 112-209 12-118 (237)
246 cd04734 OYE_like_3_FMN Old yel 24.0 6E+02 0.013 23.8 10.7 109 37-164 130-251 (343)
247 PRK05835 fructose-bisphosphate 23.9 2.9E+02 0.0062 25.7 6.8 40 169-209 90-133 (307)
248 cd02933 OYE_like_FMN Old yello 23.8 6.1E+02 0.013 23.7 13.4 25 37-61 141-172 (338)
249 PF02679 ComA: (2R)-phospho-3- 23.8 1.2E+02 0.0026 27.1 4.2 97 112-209 25-131 (244)
250 cd07939 DRE_TIM_NifV Streptomy 23.7 5.2E+02 0.011 23.0 13.2 40 38-78 17-57 (259)
251 cd04742 NPD_FabD 2-Nitropropan 23.7 3.2E+02 0.0068 26.6 7.3 88 117-211 6-102 (418)
252 COG2861 Uncharacterized protei 23.6 3.7E+02 0.0081 24.0 7.0 40 127-167 78-131 (250)
253 PRK02910 light-independent pro 23.5 7.5E+02 0.016 24.7 14.2 104 63-182 64-193 (519)
254 TIGR02082 metH 5-methyltetrahy 23.5 1.1E+03 0.023 26.6 15.8 174 106-320 366-545 (1178)
255 KOG2264 Exostosin EXT1L [Signa 23.4 1.9E+02 0.0041 29.1 5.6 60 67-142 632-693 (907)
256 TIGR03070 couple_hipB transcri 23.4 81 0.0017 20.2 2.4 22 252-273 5-26 (58)
257 PF01207 Dus: Dihydrouridine s 23.2 3.4E+02 0.0074 25.0 7.3 133 39-183 64-212 (309)
258 PRK14457 ribosomal RNA large s 23.2 6.4E+02 0.014 23.8 15.4 108 110-217 196-332 (345)
259 cd08556 GDPD Glycerophosphodie 23.1 4.2E+02 0.0091 21.6 7.5 151 39-212 11-168 (189)
260 cd08590 PI-PLCc_Rv2075c_like C 23.1 3.3E+02 0.0072 24.6 7.0 18 142-159 150-167 (267)
261 cd07940 DRE_TIM_IPMS 2-isoprop 23.0 5.5E+02 0.012 22.9 9.6 99 102-208 14-131 (268)
262 cd04747 OYE_like_5_FMN Old yel 22.9 6.6E+02 0.014 23.8 13.1 25 36-60 132-163 (361)
263 cd01973 Nitrogenase_VFe_beta_l 22.9 7.3E+02 0.016 24.3 13.7 109 62-183 66-194 (454)
264 PLN02444 HMP-P synthase 22.8 6E+02 0.013 25.8 8.9 85 103-209 295-379 (642)
265 COG0820 Predicted Fe-S-cluster 22.7 6.6E+02 0.014 23.8 9.0 109 81-189 99-222 (349)
266 cd00248 Mth938-like Mth938-lik 22.7 2.1E+02 0.0046 21.9 4.9 51 162-212 37-87 (109)
267 PRK02083 imidazole glycerol ph 22.6 5.4E+02 0.012 22.7 9.9 87 118-207 162-251 (253)
268 cd03313 enolase Enolase: Enola 22.4 7.1E+02 0.015 24.0 11.0 96 105-209 261-361 (408)
269 PRK10200 putative racemase; Pr 22.4 3.4E+02 0.0073 23.8 6.8 66 103-169 12-89 (230)
270 cd00885 cinA Competence-damage 22.4 1.9E+02 0.0041 24.1 5.0 47 44-94 22-69 (170)
271 KOG0173 20S proteasome, regula 22.1 66 0.0014 28.6 2.1 23 33-55 178-200 (271)
272 cd07945 DRE_TIM_CMS Leptospira 22.0 1.5E+02 0.0033 27.0 4.6 98 103-210 14-134 (280)
273 TIGR02660 nifV_homocitr homoci 21.9 6.8E+02 0.015 23.6 10.0 91 111-208 25-130 (365)
274 PRK05406 LamB/YcsF family prot 21.8 4.1E+02 0.0088 23.8 7.0 81 24-121 13-95 (246)
275 PRK00414 gmhA phosphoheptose i 21.8 5E+02 0.011 22.0 9.6 121 40-174 30-157 (192)
276 PRK12323 DNA polymerase III su 21.8 4.1E+02 0.0088 27.7 7.9 97 105-207 104-203 (700)
277 COG0626 MetC Cystathionine bet 21.5 3.8E+02 0.0081 25.9 7.3 82 140-221 112-196 (396)
278 PF01904 DUF72: Protein of unk 21.4 5.5E+02 0.012 22.4 11.5 138 46-211 11-149 (230)
279 PRK14455 ribosomal RNA large s 21.1 3.3E+02 0.0073 25.7 6.9 83 139-221 244-343 (356)
280 PRK14467 ribosomal RNA large s 21.1 7.1E+02 0.015 23.5 13.9 136 81-217 97-263 (348)
281 cd08562 GDPD_EcUgpQ_like Glyce 21.0 4.3E+02 0.0094 22.6 7.3 23 39-61 11-33 (229)
282 cd07938 DRE_TIM_HMGL 3-hydroxy 21.0 4.5E+02 0.0097 23.8 7.5 99 105-209 17-132 (274)
283 TIGR02814 pfaD_fam PfaD family 20.9 3.4E+02 0.0075 26.6 7.0 88 117-211 11-107 (444)
284 PRK15440 L-rhamnonate dehydrat 20.9 3.3E+02 0.0071 26.2 6.8 68 143-210 247-318 (394)
285 PRK10551 phage resistance prot 20.9 4.8E+02 0.01 26.1 8.3 98 109-210 365-473 (518)
286 PRK07094 biotin synthase; Prov 20.8 6.6E+02 0.014 23.0 9.4 142 38-190 70-219 (323)
287 PRK10415 tRNA-dihydrouridine s 20.8 6.8E+02 0.015 23.2 11.7 135 39-185 75-225 (321)
288 cd02801 DUS_like_FMN Dihydrour 20.7 5.4E+02 0.012 22.0 9.8 133 39-184 65-213 (231)
289 PF04481 DUF561: Protein of un 20.6 4.8E+02 0.01 23.0 6.9 106 39-154 25-145 (242)
290 PRK06552 keto-hydroxyglutarate 20.6 4E+02 0.0088 23.1 6.8 60 142-208 50-113 (213)
291 COG4152 ABC-type uncharacteriz 20.6 6.5E+02 0.014 22.9 8.0 70 104-175 101-199 (300)
292 COG0710 AroD 3-dehydroquinate 20.4 6.1E+02 0.013 22.5 14.5 85 39-128 12-98 (231)
293 PRK09284 thiamine biosynthesis 20.4 7E+02 0.015 25.3 8.8 85 103-209 290-374 (607)
294 PRK12558 glutamyl-tRNA synthet 20.4 2E+02 0.0044 28.2 5.3 59 104-170 47-105 (445)
295 PRK01492 rnpA ribonuclease P; 20.3 4.2E+02 0.0092 20.6 6.9 61 82-151 47-114 (118)
296 PF13467 RHH_4: Ribbon-helix-h 20.2 1.2E+02 0.0026 21.2 2.7 29 248-276 20-48 (67)
297 TIGR01428 HAD_type_II 2-haloal 20.0 2.1E+02 0.0045 23.9 4.9 64 110-175 61-128 (198)
298 COG4626 Phage terminase-like p 20.0 4.3E+02 0.0093 26.7 7.4 73 138-213 410-485 (546)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=3.1e-69 Score=498.19 Aligned_cols=306 Identities=43% Similarity=0.681 Sum_probs=273.9
Q ss_pred CCeeecCCCCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCEEecccCcCCCchHHHHHHHHhcCC-CCCeE
Q 019200 8 VPRVKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLP-REKIQ 86 (344)
Q Consensus 8 m~~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~Al~~Gin~~DtA~~Yg~g~sE~~lG~~l~~~~-R~~~~ 86 (344)
|+++.||++|++||+||||||.+|+.+. ..+.+++.++|++|+++||||||||+.||.|.||+++|++|+... |++++
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~~~-~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~~~Rd~vv 79 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGDTD-DEEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKERGRRDKVV 79 (316)
T ss_pred CCceecCCCCceecceeeeccccCCCCC-chhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhccCCCCeEE
Confidence 7899999999999999999999987422 235567888999999999999999999999999999999999754 89999
Q ss_pred EEecccccCCC-CcccccCCChHHHHHHHHHHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecCCCC
Q 019200 87 VATKFGIAGIG-VAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEAS 165 (344)
Q Consensus 87 I~tK~~~~~~~-~~~~~~~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~ 165 (344)
|+||++..... ......+.++++|+++++.||+|||||||||||+||||+..+.++++++|.+|+++||||+||+||++
T Consensus 80 IaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p~~e~~~aL~~l~~~G~ir~iG~S~~~ 159 (316)
T COG0667 80 IATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETPIEETLEALDELVREGKIRYIGVSNYS 159 (316)
T ss_pred EEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCC
Confidence 99999977643 11113678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc-CCceeeeccccccccchhhhHHHHHHHhCCcEEecccCCcccCCCCCCCCCCCCCccccc-ccCccccc
Q 019200 166 PGTIRRAHAV-HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSFLHF-LPRFKGEN 243 (344)
Q Consensus 166 ~~~l~~~~~~-~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~-~~~~~~~~ 243 (344)
++++.++++. .+++++|.+||+++|+.+.+++++|+++||++++|+||++|+|+++.... +.+.+.. .+.+..+.
T Consensus 160 ~~~i~~a~~~~~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~G~Ltgk~~~~---~~~~r~~~~~~~~~~~ 236 (316)
T COG0667 160 AEQIAEALAVAAPIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLASGLLTGKYLPG---PEGSRASELPRFQREL 236 (316)
T ss_pred HHHHHHHHHhcCCceeecccCccccccchhHHHHHHHHcCCeEEEecCccccccCCCcCCC---cchhhccccccchhhh
Confidence 9999999999 59999999999999987777999999999999999999999999994432 2222222 25566667
Q ss_pred hhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEeecCCCCHHHHHHHHhhcCCCCCHHHHHHHHhhCCC
Q 019200 244 LDRNKSIYFRIGNLAKKYNCTSAQLALAWVLGQGDDVVPIPGTTKMKNLDDNIDSLRIKLTKEDLKEISDAVPI 317 (344)
Q Consensus 244 ~~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~v~~vi~G~~~~~~l~~nl~a~~~~L~~e~~~~i~~~~~~ 317 (344)
.+........++++|+++|+|++|+||+|++++|.|++||+|+++++||++|+++++..|+++++++|++....
T Consensus 237 ~~~~~~~~~~l~~~a~~~g~t~aq~ALawvl~~~~v~~~I~Ga~~~~qL~en~~A~~~~L~~~~~~~l~~~~~~ 310 (316)
T COG0667 237 TERGLAILRALEELAKELGATPAQVALAWVLAQPGVTSPIVGASKAEQLEENLAALDIKLSEEELAALDEISAE 310 (316)
T ss_pred hHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceEeecCCCHHHHHHHHHHhcCCCCHHHHHHHHHHhhh
Confidence 77888899999999999999999999999999999999999999999999999999999999999999988764
No 2
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=5.8e-68 Score=480.13 Aligned_cols=317 Identities=44% Similarity=0.719 Sum_probs=284.2
Q ss_pred CCCCCeeecCCCCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCEEecccCcCCCchHHHHHHHHhc--CCC
Q 019200 5 KHQVPRVKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ--LPR 82 (344)
Q Consensus 5 ~~~m~~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~Al~~Gin~~DtA~~Yg~g~sE~~lG~~l~~--~~R 82 (344)
...|+|+.+|++|++||++|||+|.+.. |+...++++|.++|++|+++|+||||||++||.|.||.++|++|++ .+|
T Consensus 9 ~~~~~~~~lg~~gl~Vs~lglG~m~~~~-~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~~~~R 87 (336)
T KOG1575|consen 9 ELGMLRRKLGNSGLKVSPLGLGCMGWTT-FGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSRGWRR 87 (336)
T ss_pred hhcceeeeccCCCceecceeecceeeec-cccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhcCCcC
Confidence 4478999999999999999999975543 5555799999999999999999999999999999999999999998 579
Q ss_pred CCeEEEecccccCCCCcccccCCChHHHHHHHHHHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecC
Q 019200 83 EKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS 162 (344)
Q Consensus 83 ~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs 162 (344)
+++||+||++..... ......++..+...++.|++|||++||||||+||+|+.+++++++++|.+|+++|||||||+|
T Consensus 88 ~~vviaTK~~~~~~~--~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~piee~m~aL~~lve~Gki~yiGlS 165 (336)
T KOG1575|consen 88 DKVVIATKFGFDYGG--ETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVPIEETMRALTDLVEQGKIRYWGLS 165 (336)
T ss_pred CcEEEEEEEeccCCC--cCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCCHHHHHHHHHHHHhcCceEEEEec
Confidence 999999999977621 224568889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhhcCC--ceeeeccccccccchh-hhHHHHHHHhCCcEEecccCCcccCCCC-CCCCCCCCCcccc----
Q 019200 163 EASPGTIRRAHAVHP--ITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRGFFGGK-AVVENVPADSFLH---- 234 (344)
Q Consensus 163 ~~~~~~l~~~~~~~~--~~~~q~~~n~~~~~~~-~~l~~~~~~~gi~v~a~~pl~~G~L~~~-~~~~~~~~~~~~~---- 234 (344)
+++++++++++...+ +.++|++||++.|+.+ .+++++|++.||++++|+||++|+|+|+ ...++.+.++.+.
T Consensus 166 e~sa~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk~~~~e~~~~~~~~~~~~~ 245 (336)
T KOG1575|consen 166 EWSAEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTGKYKLGEDSRNGDKRFQFLG 245 (336)
T ss_pred cCCHHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceeccCcccccccccccccccccc
Confidence 999999999999977 9999999999999954 5699999999999999999999999999 5555566655433
Q ss_pred cccCccccchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEeecCCCCHHHHHHHHhhcCCCCCHHHHHHHHhh
Q 019200 235 FLPRFKGENLDRNKSIYFRIGNLAKKYNCTSAQLALAWVLGQGDDVVPIPGTTKMKNLDDNIDSLRIKLTKEDLKEISDA 314 (344)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~v~~vi~G~~~~~~l~~nl~a~~~~L~~e~~~~i~~~ 314 (344)
..+++... ...+..++++.++|+++|+|++|+||+|+++++.|++||||+++.+||+||++|+...|+++++.+|++.
T Consensus 246 ~~~~~~~~--~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~ve~l~eni~Al~~~Lt~e~~~~l~~~ 323 (336)
T KOG1575|consen 246 LSPQTEEG--DKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKVSSPIPGASKIEQLKENIGALSVKLTPEEIKELEEI 323 (336)
T ss_pred cccccchh--hhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCcHHHHHHHHhhhhccCCHHHHHHHHHh
Confidence 23333322 5577899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccCCCCCc
Q 019200 315 VPIEEVAGNRDP 326 (344)
Q Consensus 315 ~~~~~~~~~~~~ 326 (344)
.+.....+++|.
T Consensus 324 ~~~~~~~~~~~~ 335 (336)
T KOG1575|consen 324 IDKILGFGPRSI 335 (336)
T ss_pred hccccCcCCCCC
Confidence 998888888775
No 3
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=4.1e-62 Score=453.97 Aligned_cols=299 Identities=30% Similarity=0.472 Sum_probs=252.1
Q ss_pred eeecCCCCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCEEecccCcCCCchHHHHHHHHhc--CCCCCeEE
Q 019200 10 RVKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ--LPREKIQV 87 (344)
Q Consensus 10 ~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~Al~~Gin~~DtA~~Yg~g~sE~~lG~~l~~--~~R~~~~I 87 (344)
|+.||++|++||+||||||++ ||...+.+++.++|++|+++|||+||||+.||.|.||+++|++|+. .+|++++|
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~---~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~~~R~~~~i 77 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVT---FGGQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKKGWRRSSYVI 77 (317)
T ss_pred CcccCCCCCeecceeecCCcc---CCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhcCCCcccEEE
Confidence 578999999999999999974 2333578899999999999999999999999999999999999985 26999999
Q ss_pred EecccccCCCCcccccCCChHHHHHHHHHHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecCCCCHH
Q 019200 88 ATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPG 167 (344)
Q Consensus 88 ~tK~~~~~~~~~~~~~~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~ 167 (344)
+||++..... ....+.+++.+++++++||+||||||||+|++|||++..+++++|++|++|+++||||+||+||++++
T Consensus 78 aTK~~~~~~~--~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~~~e~~~aL~~l~~~G~ir~iGvSn~~~~ 155 (317)
T TIGR01293 78 TTKIFWGGKA--ETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTPMEETVRAMTYVINQGMAMYWGTSRWSSM 155 (317)
T ss_pred EeeeccCCCC--CCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCCHH
Confidence 9998643211 01235689999999999999999999999999999988889999999999999999999999999999
Q ss_pred HHHHHhhc------CCceeeeccccccccch-hhhHHHHHHHhCCcEEecccCCcccCCCCCCCCCCCCCccccccc---
Q 019200 168 TIRRAHAV------HPITAVQMEWSLWTRDI-EEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSFLHFLP--- 237 (344)
Q Consensus 168 ~l~~~~~~------~~~~~~q~~~n~~~~~~-~~~l~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~--- 237 (344)
+++++... .+++++|++||++++.. +.+++++|+++||++++|+||++|+|+++.... .+++. +...+
T Consensus 156 ~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Ltg~~~~~-~~~~~-~~~~~~~~ 233 (317)
T TIGR01293 156 EIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVSGKYDSG-IPPYS-RATLKGYQ 233 (317)
T ss_pred HHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccCCCCCCC-CCCcc-cccccccc
Confidence 98776543 46788999999999874 568999999999999999999999999984332 22221 11111
Q ss_pred ----CccccchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEeecCCCCHHHHHHHHhhcCC--CCCHHHHHHH
Q 019200 238 ----RFKGENLDRNKSIYFRIGNLAKKYNCTSAQLALAWVLGQGDDVVPIPGTTKMKNLDDNIDSLRI--KLTKEDLKEI 311 (344)
Q Consensus 238 ----~~~~~~~~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~v~~vi~G~~~~~~l~~nl~a~~~--~L~~e~~~~i 311 (344)
.+..+.....+...+.++++|+++|+|++|+||+|++++|+|++||+|+++++||++|+++++. +||++++++|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~~~~Ls~e~~~~l 313 (317)
T TIGR01293 234 WLKDKILSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSAEQLMENLGSLQVLPKLSSSIIHEI 313 (317)
T ss_pred hhhhhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHHHhhccCCCCHHHHHHH
Confidence 0111122234567788999999999999999999999999999999999999999999999987 9999999999
Q ss_pred HhhC
Q 019200 312 SDAV 315 (344)
Q Consensus 312 ~~~~ 315 (344)
++++
T Consensus 314 ~~~~ 317 (317)
T TIGR01293 314 DSIL 317 (317)
T ss_pred HhhC
Confidence 9763
No 4
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=8.7e-62 Score=456.41 Aligned_cols=309 Identities=26% Similarity=0.472 Sum_probs=256.7
Q ss_pred cCCCCCeeecCCCCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCEEecccCcCC--CchHHHHHHHHhcC-
Q 019200 4 EKHQVPRVKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQ--NANEVLLGKALKQL- 80 (344)
Q Consensus 4 ~~~~m~~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~Al~~Gin~~DtA~~Yg~--g~sE~~lG~~l~~~- 80 (344)
....|++++||+||++||+||||||+. ||...+.+++.++|++|++.|||+||||+.||. |.||+.+|++|++.
T Consensus 9 ~~~~m~~r~lg~tg~~vs~lglG~~~~---~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~ 85 (346)
T PRK09912 9 RYGQMQYRYCGKSGLRLPALSLGLWHN---FGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDF 85 (346)
T ss_pred CCCCcceeecCCCCcccccccccCccc---cCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhcc
Confidence 455799999999999999999999962 333336678899999999999999999999994 89999999999852
Q ss_pred --CCCCeEEEecccccCCCCcccccCCChHHHHHHHHHHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCcccE
Q 019200 81 --PREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKY 158 (344)
Q Consensus 81 --~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~ 158 (344)
.|+++||+||+|.....+ ....+.+++.+++++++||+|||+||||+|++|||++..+++++|++|++|+++||||+
T Consensus 86 ~~~Rd~~~I~TK~g~~~~~~-~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~GkIr~ 164 (346)
T PRK09912 86 AAYRDELIISTKAGYDMWPG-PYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALY 164 (346)
T ss_pred cCCCCeEEEEEEecccCCCC-cCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeE
Confidence 599999999998532111 11234689999999999999999999999999999988889999999999999999999
Q ss_pred EecCCCCHHHHHHHhhc-----CCceeeeccccccccchh-hhHHHHHHHhCCcEEecccCCcccCCCCCCCCCCCCCcc
Q 019200 159 IGLSEASPGTIRRAHAV-----HPITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSF 232 (344)
Q Consensus 159 iGvs~~~~~~l~~~~~~-----~~~~~~q~~~n~~~~~~~-~~l~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~ 232 (344)
||||||++++++++.+. .+++++|++||++++..+ .+++++|+++||++++|+||++|+|+++.... .|.+..
T Consensus 165 iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt~~~~~~-~~~~~~ 243 (346)
T PRK09912 165 VGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGKYLNG-IPQDSR 243 (346)
T ss_pred EEecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCccccCCCCCC-CCCCcc
Confidence 99999999988766542 367899999999998754 46999999999999999999999999884221 121110
Q ss_pred cc----cccCccccch-hhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEeecCCCCHHHHHHHHhhcC-CCCCHH
Q 019200 233 LH----FLPRFKGENL-DRNKSIYFRIGNLAKKYNCTSAQLALAWVLGQGDDVVPIPGTTKMKNLDDNIDSLR-IKLTKE 306 (344)
Q Consensus 233 ~~----~~~~~~~~~~-~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~v~~vi~G~~~~~~l~~nl~a~~-~~L~~e 306 (344)
.. ....|.+..+ +..+...+.+.++|+++|+|++|+||+|++++|.|++||+|+++++||++|++++. .+|+++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~~~L~~e 323 (346)
T PRK09912 244 MHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIGASRAEQLEENVQALNNLTFSTE 323 (346)
T ss_pred ccccccchhhhchhhccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHhhhcCCCCCHH
Confidence 00 0011111111 23456678999999999999999999999999999999999999999999999984 799999
Q ss_pred HHHHHHhhCCC
Q 019200 307 DLKEISDAVPI 317 (344)
Q Consensus 307 ~~~~i~~~~~~ 317 (344)
++++|+++++.
T Consensus 324 ~~~~l~~~~~~ 334 (346)
T PRK09912 324 ELAQIDQHIAD 334 (346)
T ss_pred HHHHHHHhhCc
Confidence 99999998864
No 5
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=1e-61 Score=456.51 Aligned_cols=304 Identities=29% Similarity=0.392 Sum_probs=254.2
Q ss_pred CCeeecCCCCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCEEecccCcC-------CCchHHHHHHHHhc-
Q 019200 8 VPRVKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYG-------QNANEVLLGKALKQ- 79 (344)
Q Consensus 8 m~~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~Al~~Gin~~DtA~~Yg-------~g~sE~~lG~~l~~- 79 (344)
|+|++||+||++||+||||||++|+ ..+.+++.++|++|+++|||+||||+.|| .|.||.++|++|++
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~----~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~ 76 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGE----QNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKR 76 (346)
T ss_pred CCceecCCCCCccccEeEeccccCC----CCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhc
Confidence 7899999999999999999998864 24678999999999999999999999998 48899999999985
Q ss_pred CCCCCeEEEecccccCCCCcc---cccCCChHHHHHHHHHHHhhcCCCceeEEEeccCCC-----------------CCC
Q 019200 80 LPREKIQVATKFGIAGIGVAG---VIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDT-----------------SVP 139 (344)
Q Consensus 80 ~~R~~~~I~tK~~~~~~~~~~---~~~~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~-----------------~~~ 139 (344)
.+|++++|+||++........ ...+.+++.+++++++||+|||+||||||++|||+. ..+
T Consensus 77 ~~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~ 156 (346)
T PRK10625 77 GSREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVS 156 (346)
T ss_pred CCcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccccCCCC
Confidence 359999999998632211000 012478999999999999999999999999999964 246
Q ss_pred HHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhc------CCceeeeccccccccchhhhHHHHHHHhCCcEEecccC
Q 019200 140 IEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV------HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPL 213 (344)
Q Consensus 140 ~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~------~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~pl 213 (344)
++++|++|++|+++||||+||+|||+.++++++... ..+.++|++||++++..+.+++++|+++||++++|+||
T Consensus 157 ~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via~spL 236 (346)
T PRK10625 157 LLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCL 236 (346)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEEeccc
Confidence 789999999999999999999999999988775432 35788999999999877668999999999999999999
Q ss_pred CcccCCCCCCCCCCCCCcccc-cccCccccchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEeecCCCCHHHH
Q 019200 214 GRGFFGGKAVVENVPADSFLH-FLPRFKGENLDRNKSIYFRIGNLAKKYNCTSAQLALAWVLGQGDDVVPIPGTTKMKNL 292 (344)
Q Consensus 214 ~~G~L~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~v~~vi~G~~~~~~l 292 (344)
++|+|+++......+.+ .+. ....|............+.+.++|+++|+|++|+||+|++++|.|+++|+|+++++||
T Consensus 237 ~~G~Ltg~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~~v~~~I~G~~~~~~l 315 (346)
T PRK10625 237 AFGTLTGKYLNGAKPAG-ARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTLLGATTMEQL 315 (346)
T ss_pred cCeeccCCCCCCCCCCC-cccccccccccccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEeCCCCHHHH
Confidence 99999998432222222 110 1111221112345667889999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCHHHHHHHHhhCC
Q 019200 293 DDNIDSLRIKLTKEDLKEISDAVP 316 (344)
Q Consensus 293 ~~nl~a~~~~L~~e~~~~i~~~~~ 316 (344)
++|+++++++|+++++++|+++.+
T Consensus 316 ~en~~a~~~~L~~~~~~~l~~~~~ 339 (346)
T PRK10625 316 KTNIESLHLTLSEEVLAEIEAVHQ 339 (346)
T ss_pred HHHHhhccCCCCHHHHHHHHHHHh
Confidence 999999999999999999999875
No 6
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=3.3e-60 Score=422.19 Aligned_cols=257 Identities=33% Similarity=0.541 Sum_probs=231.6
Q ss_pred CCeeecCCCCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCEEecccCcCCCchHHHHHHHHhc--CCCCCe
Q 019200 8 VPRVKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ--LPREKI 85 (344)
Q Consensus 8 m~~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~Al~~Gin~~DtA~~Yg~g~sE~~lG~~l~~--~~R~~~ 85 (344)
+.+.++ ++|.+||.||||||.+++ .+.+.+.+.+|++.|+|+||||..|| ||+.+|+++++ .+|+++
T Consensus 3 ~~~~~l-~~g~~iP~iGlGt~~~~~-------~~~~~~av~~Al~~Gyr~IDTA~~Yg---nE~~VG~aI~~s~v~Reel 71 (280)
T COG0656 3 KTKVTL-NNGVEIPAIGLGTWQIGD-------DEWAVRAVRAALELGYRLIDTAEIYG---NEEEVGEAIKESGVPREEL 71 (280)
T ss_pred Cceeec-CCCCcccCcceEeeecCC-------chhHHHHHHHHHHhCcceEecHhHhc---CHHHHHHHHHhcCCCHHHe
Confidence 455677 567789999999998764 23389999999999999999999999 89999999998 689999
Q ss_pred EEEecccccCCCCcccccCCChHHHHHHHHHHHhhcCCCceeEEEeccCCCC--CCHHHHHHHHHHHHHcCcccEEecCC
Q 019200 86 QVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS--VPIEETIGEMKKLVEEGKIKYIGLSE 163 (344)
Q Consensus 86 ~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~--~~~~~~~~~L~~l~~~G~ir~iGvs~ 163 (344)
||+||++... .+++.+.+++++||+|||+||+|||++|||.+. ..+.++|++|++++++|+||+|||||
T Consensus 72 FittKvw~~~---------~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ir~IGVSN 142 (280)
T COG0656 72 FITTKVWPSD---------LGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGLIRAIGVSN 142 (280)
T ss_pred EEEeecCCcc---------CCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCCccEEEeeC
Confidence 9999998653 678999999999999999999999999999763 33789999999999999999999999
Q ss_pred CCHHHHHHHhhc--CCceeeeccccccccchhhhHHHHHHHhCCcEEecccCCccc-CCCCCCCCCCCCCcccccccCcc
Q 019200 164 ASPGTIRRAHAV--HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGF-FGGKAVVENVPADSFLHFLPRFK 240 (344)
Q Consensus 164 ~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G~-L~~~~~~~~~~~~~~~~~~~~~~ 240 (344)
|+.++|+++++. ..++++|++||++.++. +++++|+++||.++|||||++|. |...
T Consensus 143 F~~~~L~~l~~~~~~~p~~NQIe~hp~~~q~--el~~~~~~~gI~v~AysPL~~g~~l~~~------------------- 201 (280)
T COG0656 143 FGVEHLEELLSLAKVKPAVNQIEYHPYLRQP--ELLPFCQRHGIAVEAYSPLAKGGKLLDN------------------- 201 (280)
T ss_pred CCHHHHHHHHHhcCCCCceEEEEeccCCCcH--HHHHHHHHcCCEEEEECCcccccccccC-------------------
Confidence 999999999877 44899999999999985 49999999999999999999654 3321
Q ss_pred ccchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEeecCCCCHHHHHHHHhhcCCCCCHHHHHHHHhhCCCC
Q 019200 241 GENLDRNKSIYFRIGNLAKKYNCTSAQLALAWVLGQGDDVVPIPGTTKMKNLDDNIDSLRIKLTKEDLKEISDAVPIE 318 (344)
Q Consensus 241 ~~~~~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~v~~vi~G~~~~~~l~~nl~a~~~~L~~e~~~~i~~~~~~~ 318 (344)
+.+.+||++||.|++|++|+|+++++ .+|||.+++++|+++|++++++.||+|||++|+++....
T Consensus 202 -----------~~l~~Ia~k~g~t~AQv~L~W~i~~g--v~~Ipks~~~~ri~eN~~~~~f~Ls~ed~~~i~~l~~~~ 266 (280)
T COG0656 202 -----------PVLAEIAKKYGKTPAQVALRWHIQRG--VIVIPKSTTPERIRENLAAFDFELSEEDMAAIDALDRGY 266 (280)
T ss_pred -----------hHHHHHHHHhCCCHHHHHHHHHHhCC--cEEecCCCCHHHHHHHHhhhcCCCCHHHHHHHHhhcccc
Confidence 58999999999999999999999999 489999999999999999999999999999999999865
No 7
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=1.3e-59 Score=436.77 Aligned_cols=287 Identities=29% Similarity=0.472 Sum_probs=246.3
Q ss_pred eeecCCCCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCEEecccCcCCCchHHHHHHHHhc--CCCCCeEE
Q 019200 10 RVKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ--LPREKIQV 87 (344)
Q Consensus 10 ~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~Al~~Gin~~DtA~~Yg~g~sE~~lG~~l~~--~~R~~~~I 87 (344)
||+||+||++||.||||||++|+.|+. ++.+++.++|++|++.|||+||||+.||.|.||+.+|++|+. .+|+++||
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~~~~-~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~~~R~~v~I 79 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSVFGP-VSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKALGIPREKYVV 79 (314)
T ss_pred CCcCCCCCCcccCcccccccccCCCCC-CCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhCCCCcceEEE
Confidence 678999999999999999999876764 488899999999999999999999999999999999999986 36999999
Q ss_pred EecccccCCCCcccccCCChHHHHHHHHHHHhhcCCCceeEEEeccCCC---CCCHHHHHHHHHHHHHcCcccEEecCCC
Q 019200 88 ATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDT---SVPIEETIGEMKKLVEEGKIKYIGLSEA 164 (344)
Q Consensus 88 ~tK~~~~~~~~~~~~~~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~---~~~~~~~~~~L~~l~~~G~ir~iGvs~~ 164 (344)
+||++.... ..+++++.+++++++||+|||+||||+|++|+|+. ...++++|++|++|+++||||+||+|||
T Consensus 80 ~TK~~~~~~-----~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~ 154 (314)
T PLN02587 80 STKCGRYGE-----GFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGKVRFIGITGL 154 (314)
T ss_pred EeccccCCC-----CCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 999984321 13578999999999999999999999999999974 2356789999999999999999999999
Q ss_pred CHHHHHHHhhc---C--CceeeeccccccccchhhhHHHHHHHhCCcEEecccCCcccCCCCCCCCCCCCCcccccccCc
Q 019200 165 SPGTIRRAHAV---H--PITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSFLHFLPRF 239 (344)
Q Consensus 165 ~~~~l~~~~~~---~--~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~ 239 (344)
++++++.+... . .+..+|+.||++++.. .+++++|+++||++++|+||++|+|+++.... +
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ll~~~~~~gi~v~a~spl~~G~L~~~~~~~-------------~ 220 (314)
T PLN02587 155 PLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSL-EDLLPYLKSKGVGVISASPLAMGLLTENGPPE-------------W 220 (314)
T ss_pred CHHHHHHHHHhhhcCCCCeEEeccccCcchhhH-HHHHHHHHHcCceEEEechhhccccCCCCCCC-------------C
Confidence 99888776543 2 2333578999987754 48999999999999999999999999863111 0
Q ss_pred cccchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEeecCCCCHHHHHHHHhhcC----CCCCHHHHHHHHhhC
Q 019200 240 KGENLDRNKSIYFRIGNLAKKYNCTSAQLALAWVLGQGDDVVPIPGTTKMKNLDDNIDSLR----IKLTKEDLKEISDAV 315 (344)
Q Consensus 240 ~~~~~~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~v~~vi~G~~~~~~l~~nl~a~~----~~L~~e~~~~i~~~~ 315 (344)
.+ ..+......+.++++|+++++|++|+||+|++++|.|++||+|+++++||++|++++. .+|+++++++|+++.
T Consensus 221 ~~-~~~~~~~~~~~l~~~a~~~~~s~aq~al~~~l~~~~v~~~i~G~~~~~~l~~nl~a~~~~~~~~l~~~~~~~l~~~~ 299 (314)
T PLN02587 221 HP-APPELKSACAAAATHCKEKGKNISKLALQYSLSNKDISTTLVGMNSVQQVEENVAAATELETSGIDEELLSEVEAIL 299 (314)
T ss_pred CC-CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEecCCCHHHHHHHHHHHhhcccCCCCHHHHHHHHHhh
Confidence 00 1134456778899999999999999999999999999999999999999999999976 379999999999998
Q ss_pred CC
Q 019200 316 PI 317 (344)
Q Consensus 316 ~~ 317 (344)
+.
T Consensus 300 ~~ 301 (314)
T PLN02587 300 AP 301 (314)
T ss_pred cc
Confidence 63
No 8
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=8.1e-58 Score=419.68 Aligned_cols=281 Identities=41% Similarity=0.672 Sum_probs=251.3
Q ss_pred eeecCCCCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCEEecccCcCCCchHHHHHHHHhcCC-CCCeEEE
Q 019200 10 RVKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLP-REKIQVA 88 (344)
Q Consensus 10 ~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~Al~~Gin~~DtA~~Yg~g~sE~~lG~~l~~~~-R~~~~I~ 88 (344)
++.||+||++||+||||||.++..| .+.+++.+++++|++.|||+||||+.||.|.||+.+|++|++.. |++++|+
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~~---~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~~~R~~~~i~ 77 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGGY---VDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKERGPREEVFIA 77 (285)
T ss_pred CcccCCCCceecCcceeccccCCCC---CCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhccCCcCcEEEE
Confidence 5789999999999999999987655 47899999999999999999999999999999999999999754 9999999
Q ss_pred ecccccCCCCcccccCCChHHHHHHHHHHHhhcCCCceeEEEeccCCCCCC-HHHHHHHHHHHHHcCcccEEecCCCCHH
Q 019200 89 TKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVP-IEETIGEMKKLVEEGKIKYIGLSEASPG 167 (344)
Q Consensus 89 tK~~~~~~~~~~~~~~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~~-~~~~~~~L~~l~~~G~ir~iGvs~~~~~ 167 (344)
||++..... ..+.+++.+++++++||++||++|||+|+||+|+.... ..++|++|++++++|+||+||+|+++++
T Consensus 78 tK~~~~~~~----~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~ 153 (285)
T cd06660 78 TKVGPRPGD----GRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIGVSNFSAE 153 (285)
T ss_pred eeecCCCCC----CCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEEEeeCCCHH
Confidence 999865321 14578999999999999999999999999999987665 8899999999999999999999999999
Q ss_pred HHHHHhhc--CCceeeeccccccccchhhhHHHHHHHhCCcEEecccCCcccCCCCCCCCCCCCCcccccccCccccchh
Q 019200 168 TIRRAHAV--HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSFLHFLPRFKGENLD 245 (344)
Q Consensus 168 ~l~~~~~~--~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (344)
.+.++.+. .+++++|++||++++..+.+++++|+++||++++|+||++|.|+++......++
T Consensus 154 ~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~~~~~~---------------- 217 (285)
T cd06660 154 QLEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAGGLLTGKYLPGAPPP---------------- 217 (285)
T ss_pred HHHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccCceecCCCCCCCCCC----------------
Confidence 99999888 899999999999999876679999999999999999999999986622111111
Q ss_pred hhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEeecCCCCHHHHHHHHhhcCCCCCHHHHHHHHhh
Q 019200 246 RNKSIYFRIGNLAKKYNCTSAQLALAWVLGQGDDVVPIPGTTKMKNLDDNIDSLRIKLTKEDLKEISDA 314 (344)
Q Consensus 246 ~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~v~~vi~G~~~~~~l~~nl~a~~~~L~~e~~~~i~~~ 314 (344)
.......+..++.+++++++|+|++|++++|.+++||+|+++++||++|+++...+|+++++++|+++
T Consensus 218 -~~~~~~~~~~~~~~~~~s~~q~al~~~l~~p~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~l~~~ 285 (285)
T cd06660 218 -EGDLLEALKEIAEKHGVTPAQVALRWLLQQPGVTSVIPGASSPERLEENLAALDFELSDEDLAALDAL 285 (285)
T ss_pred -hhhHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHhhccCCCCHHHHHHHhhC
Confidence 01145789999999999999999999999999999999999999999999999999999999999863
No 9
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=3.2e-57 Score=415.89 Aligned_cols=272 Identities=27% Similarity=0.468 Sum_probs=237.2
Q ss_pred eecCCCCccccccccccccCCC--CCCCCCCHHHHHHHHHHHHHcCCCEEecccCcCCCchHHHHHHHHhcCCCCCeEEE
Q 019200 11 VKLGTQGLEVSKLGYGCMNLSG--GYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVA 88 (344)
Q Consensus 11 ~~lg~tg~~vs~lglG~~~~~~--~~~~~~~~~~~~~~l~~Al~~Gin~~DtA~~Yg~g~sE~~lG~~l~~~~R~~~~I~ 88 (344)
+.|+ |++||+||||||++|+ .||...+++++.++|++|++.|||+||||+.||.|.+|+++|++++. .|++++|+
T Consensus 10 ~~l~--g~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~-~R~~~~i~ 86 (290)
T PRK10376 10 FTLG--GRSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHP-YPDDLTIV 86 (290)
T ss_pred eecC--CeeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhc-CCCeEEEE
Confidence 4553 9999999999999975 36765578899999999999999999999999999999999999973 69999999
Q ss_pred ecccccCCCCcccccCCChHHHHHHHHHHHhhcCCCceeEEEeccCCC-----CCCHHHHHHHHHHHHHcCcccEEecCC
Q 019200 89 TKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDT-----SVPIEETIGEMKKLVEEGKIKYIGLSE 163 (344)
Q Consensus 89 tK~~~~~~~~~~~~~~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~-----~~~~~~~~~~L~~l~~~G~ir~iGvs~ 163 (344)
||++........+..+.+++.+++++++||+||||||||+|++|+++. ..+++++|++|++|+++||||+||+||
T Consensus 87 TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~l~~~Gkir~iGvSn 166 (290)
T PRK10376 87 TKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAELQRQGLVRHIGLSN 166 (290)
T ss_pred eeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHHHHHCCceeEEEecC
Confidence 999764322111234678999999999999999999999999988521 235789999999999999999999999
Q ss_pred CCHHHHHHHhhcCCceeeeccccccccchhhhHHHHHHHhCCcEEecccCCcccCCCCCCCCCCCCCcccccccCccccc
Q 019200 164 ASPGTIRRAHAVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSFLHFLPRFKGEN 243 (344)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (344)
|++++++++.+..+++++|++||++++.. .+++++|+++||++++|+||+++..
T Consensus 167 ~~~~~l~~~~~~~~~~~~q~~~~~~~~~~-~~~~~~~~~~gi~v~a~~pL~g~~~------------------------- 220 (290)
T PRK10376 167 VTPTQVAEARKIAEIVCVQNHYNLAHRAD-DALIDALARDGIAYVPFFPLGGFTP------------------------- 220 (290)
T ss_pred CCHHHHHHHHhhCCeEEEecccCCCcCCh-HHHHHHHHHcCCEEEEeecCCCCCh-------------------------
Confidence 99999999988888999999999999864 5799999999999999999974210
Q ss_pred hhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEeecCCCCHHHHHHHHhhcCCCCCHHHHHHHHhhCC
Q 019200 244 LDRNKSIYFRIGNLAKKYNCTSAQLALAWVLGQGDDVVPIPGTTKMKNLDDNIDSLRIKLTKEDLKEISDAVP 316 (344)
Q Consensus 244 ~~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~v~~vi~G~~~~~~l~~nl~a~~~~L~~e~~~~i~~~~~ 316 (344)
...+.+.++|+++|+|++|+||+|+++++.+++||+|+++++|+++|+++.+++|+++++++|+++.+
T Consensus 221 -----~~~~~l~~ia~~~~~t~aq~al~w~l~~~~~~~~i~G~~~~~~l~en~~a~~~~L~~e~~~~l~~~~~ 288 (290)
T PRK10376 221 -----LQSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENLAAAELVLSEEVLAELDGIAR 288 (290)
T ss_pred -----hhhHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEeeCCCCHHHHHHHHhhccCCCCHHHHHHHHHHHh
Confidence 01257899999999999999999999997777899999999999999999999999999999998865
No 10
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=3.3e-57 Score=415.23 Aligned_cols=276 Identities=37% Similarity=0.599 Sum_probs=234.9
Q ss_pred ccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCEEecccCcCCCchHHHHHHHHhc--CCCCCeEEEecccccCCCCc
Q 019200 22 KLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ--LPREKIQVATKFGIAGIGVA 99 (344)
Q Consensus 22 ~lglG~~~~~~~~~~~~~~~~~~~~l~~Al~~Gin~~DtA~~Yg~g~sE~~lG~~l~~--~~R~~~~I~tK~~~~~~~~~ 99 (344)
+||||||++++. ..+.+++.++|+.|++.|||+||||+.||+|.||+.+|++|++ .+|++++|+||+....
T Consensus 1 ~l~lG~~~~~~~---~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~~~~r~~~~i~tK~~~~~---- 73 (283)
T PF00248_consen 1 PLGLGTWRLGGE---RVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKSRVPRDDIFISTKVYGDG---- 73 (283)
T ss_dssp SBEEECTTBTTT---TSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHTSSTGGGSEEEEEEESSS----
T ss_pred CEEEEccccCCC---CCCHHHHHHHHHHHHHcCCCeeccccccccccccccccccccccccccccccccccccccc----
Confidence 589999998752 4699999999999999999999999999999999999999998 6899999999992211
Q ss_pred ccccCCChHHHHHHHHHHHhhcCCCceeEEEeccCCCCCC-HHHHHHHHHHHHHcCcccEEecCCCCHHHHHHH--hhcC
Q 019200 100 GVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVP-IEETIGEMKKLVEEGKIKYIGLSEASPGTIRRA--HAVH 176 (344)
Q Consensus 100 ~~~~~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~~-~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~--~~~~ 176 (344)
....+.+++.+++++++||++||+||||+|++|+|+.... .+++|++|++|+++|+||+||||||+++.++++ ....
T Consensus 74 ~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 153 (283)
T PF00248_consen 74 KPEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQLEAALKIGSI 153 (283)
T ss_dssp STGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHTCTSS
T ss_pred cccccccccccccccccccccccccchhccccccccccccccchhhhhhhhccccccccccccccccccccccccccccc
Confidence 2346789999999999999999999999999999998888 899999999999999999999999999999999 5568
Q ss_pred CceeeeccccccccchhhhHHHHHHHhCCcEEecccCCcccCCCCCCC-CCCCCCcccccccCccccchhhhHHHHHHHH
Q 019200 177 PITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVV-ENVPADSFLHFLPRFKGENLDRNKSIYFRIG 255 (344)
Q Consensus 177 ~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 255 (344)
+|+++|++||++.+....+++++|+++||++++|+|+++|+|+++... ...+..... ...+...+.+.
T Consensus 154 ~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~G~l~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~ 222 (283)
T PF00248_consen 154 PPDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAGGLLTGKYKSPPPPPSRASL-----------RDAQELADALR 222 (283)
T ss_dssp -ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGGGCGGTTTTTTTTSTTTSGS-----------STHGGGHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccCccccccccCCCccccccc-----------chhhhhhhhhh
Confidence 899999999999777778999999999999999999999999987322 222221111 01345668999
Q ss_pred HHHHHcCCCHHHHHHHHHHhCCCCeEeecCCCCHHHHHHHHhhcCCCCCHHHHHHHHhhC
Q 019200 256 NLAKKYNCTSAQLALAWVLGQGDDVVPIPGTTKMKNLDDNIDSLRIKLTKEDLKEISDAV 315 (344)
Q Consensus 256 ~la~~~~~s~~qlal~~~l~~~~v~~vi~G~~~~~~l~~nl~a~~~~L~~e~~~~i~~~~ 315 (344)
++++++|+|++|+||+|++++|.+++||+|+++++||++|+++++.+||++++++|+++.
T Consensus 223 ~~a~~~g~s~~q~al~~~l~~~~~~~~i~g~~~~~~l~en~~a~~~~L~~~~~~~i~~~~ 282 (283)
T PF00248_consen 223 ELAEEHGVSPAQLALRWVLSHPGVASVIVGASSPEHLEENLAALDFPLTEEELAEIDQIL 282 (283)
T ss_dssp HHHHHHTSSHHHHHHHHHHTSHTTEEEEEB-SSHHHHHHHHGGSSSG--HHHHHHHHTTH
T ss_pred hhhhhcccccchhhhhhhhhccccccccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999874
No 11
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=6.8e-55 Score=395.90 Aligned_cols=246 Identities=29% Similarity=0.448 Sum_probs=220.6
Q ss_pred ccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCEEecccCcCCCchHHHHHHHHhc--CCCCCeEEEecccccC
Q 019200 18 LEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ--LPREKIQVATKFGIAG 95 (344)
Q Consensus 18 ~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~Al~~Gin~~DtA~~Yg~g~sE~~lG~~l~~--~~R~~~~I~tK~~~~~ 95 (344)
++||.||||||+++ .+++.+++++|++.|||+||||+.|| +|..+|++|+. .+|+++||+||++..
T Consensus 1 ~~vs~lglGt~~~~--------~~~~~~~i~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~R~~v~i~TK~~~~- 68 (267)
T PRK11172 1 MSIPAFGLGTFRLK--------DQVVIDSVKTALELGYRAIDTAQIYD---NEAAVGQAIAESGVPRDELFITTKIWID- 68 (267)
T ss_pred CCCCCEeeEccccC--------hHHHHHHHHHHHHcCCCEEEccchhC---CHHHHHHHHHHcCCChhHeEEEEEeCCC-
Confidence 36899999999753 36799999999999999999999999 69999999985 369999999998532
Q ss_pred CCCcccccCCChHHHHHHHHHHHhhcCCCceeEEEeccCCCC--CCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHh
Q 019200 96 IGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS--VPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAH 173 (344)
Q Consensus 96 ~~~~~~~~~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~--~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~ 173 (344)
+.+++.+++++++||+|||+||||+|++|||++. .+.+++|++|++|+++||||+||||||+.+++++++
T Consensus 69 --------~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~ 140 (267)
T PRK11172 69 --------NLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTREIGISNFTIALMKQAI 140 (267)
T ss_pred --------CCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHHH
Confidence 3678999999999999999999999999999763 567899999999999999999999999999998887
Q ss_pred hc---CCceeeeccccccccchhhhHHHHHHHhCCcEEecccCCcccCCCCCCCCCCCCCcccccccCccccchhhhHHH
Q 019200 174 AV---HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSFLHFLPRFKGENLDRNKSI 250 (344)
Q Consensus 174 ~~---~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (344)
+. .+++++|++||++.+. .+++++|+++||++++|+||++|.+...
T Consensus 141 ~~~~~~~~~~~Q~~~~~~~~~--~~ll~~~~~~gi~v~a~spl~~G~~~~~----------------------------- 189 (267)
T PRK11172 141 AAVGAENIATNQIELSPYLQN--RKVVAFAKEHGIHVTSYMTLAYGKVLKD----------------------------- 189 (267)
T ss_pred HhcCCCCCeEEeeecCCCCCc--HHHHHHHHHCCCEEEEECCCCCCcccCC-----------------------------
Confidence 64 3678999999999875 5799999999999999999999865321
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEeecCCCCHHHHHHHHhhcCCCCCHHHHHHHHhhCCC
Q 019200 251 YFRIGNLAKKYNCTSAQLALAWVLGQGDDVVPIPGTTKMKNLDDNIDSLRIKLTKEDLKEISDAVPI 317 (344)
Q Consensus 251 ~~~l~~la~~~~~s~~qlal~~~l~~~~v~~vi~G~~~~~~l~~nl~a~~~~L~~e~~~~i~~~~~~ 317 (344)
+.+.++|+++|+|++|+||+|+++++. +||+|+++++||++|+++++++||++++++|+++.+.
T Consensus 190 -~~l~~~a~~~~~s~aqval~w~l~~~~--~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~i~~~~~~ 253 (267)
T PRK11172 190 -PVIARIAAKHNATPAQVILAWAMQLGY--SVIPSSTKRENLASNLLAQDLQLDAEDMAAIAALDRN 253 (267)
T ss_pred -HHHHHHHHHhCCCHHHHHHHHHHhCCC--EeecCCCCHHHHHHHHhhcCCCcCHHHHHHHhhhccC
Confidence 358899999999999999999999974 6999999999999999999999999999999999754
No 12
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=2.5e-55 Score=402.77 Aligned_cols=279 Identities=18% Similarity=0.233 Sum_probs=233.6
Q ss_pred CccccccccccccCCCC-------CCCCCCHHHHHHHHHHHHHcCCCEEecccCcCCCchHHHHHHHHhcCCCCCeEEEe
Q 019200 17 GLEVSKLGYGCMNLSGG-------YSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVAT 89 (344)
Q Consensus 17 g~~vs~lglG~~~~~~~-------~~~~~~~~~~~~~l~~Al~~Gin~~DtA~~Yg~g~sE~~lG~~l~~~~R~~~~I~t 89 (344)
+++||+||||||++|+. |+. ++++++.++|+.|++.|||+||||+.||. ||.++|++|+...+++++|+|
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~-~~~~ea~~~l~~A~~~Gin~~DTA~~YG~--SE~~lG~al~~~~~~~~~i~t 78 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGR-TPEAEARDILNIAARAGLSVLDASGLFGR--AETVLGQLIPRPVPFRVTLST 78 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCC-CCHHHHHHHHHHHHHcCCCEEecchhhhh--HHHHHhhhhccCCceEeeccc
Confidence 57899999999999863 443 58999999999999999999999999974 999999999753346788899
Q ss_pred cccccCCCCcccccCCChHHHHHHHHHHHhhcCCCceeEEEeccCCCC-CCH-HHHHHHHHHHHHcCcccEEecCCCCHH
Q 019200 90 KFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS-VPI-EETIGEMKKLVEEGKIKYIGLSEASPG 167 (344)
Q Consensus 90 K~~~~~~~~~~~~~~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~-~~~-~~~~~~L~~l~~~G~ir~iGvs~~~~~ 167 (344)
|.. +.+++.+++++++||+|||+||||+|++|+|+.. .+. +++|++|++|+++||||+|||||++++
T Consensus 79 k~~-----------~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~ 147 (292)
T PRK14863 79 VRA-----------DRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAKIGVSAHASD 147 (292)
T ss_pred ccc-----------cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceEeeeccCHH
Confidence 842 2468999999999999999999999999999763 333 678999999999999999999999999
Q ss_pred HHHHHhhcCCceeeeccccccccchh-hhHHHHHHHhCCcEEecccCCcccCCCCCCCCCCCCCcccccccCccccchhh
Q 019200 168 TIRRAHAVHPITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSFLHFLPRFKGENLDR 246 (344)
Q Consensus 168 ~l~~~~~~~~~~~~q~~~n~~~~~~~-~~l~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (344)
++..+....+++++|++||+++++.+ .+++++|+++||++++|+||++|+|++... ..+. .+..
T Consensus 148 ~~~~~~~~~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~~~~~--~~~~-------------~~~~ 212 (292)
T PRK14863 148 DPVGVARRFKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLFLPPD--RVPA-------------QLKG 212 (292)
T ss_pred HHHHHHhcCCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCccccCCcc--cCcc-------------chhh
Confidence 98888777889999999999998754 469999999999999999999999975311 0110 0112
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEeecCCCCHHHHHHHHhhcCCCCCHHHHHHHHhhCCCCccCCCCC
Q 019200 247 NKSIYFRIGNLAKKYNCTSAQLALAWVLGQGDDVVPIPGTTKMKNLDDNIDSLRIKLTKEDLKEISDAVPIEEVAGNRD 325 (344)
Q Consensus 247 ~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~v~~vi~G~~~~~~l~~nl~a~~~~L~~e~~~~i~~~~~~~~~~~~~~ 325 (344)
....+..+.+++.+.++|++|+||+|++++|.|+++|+|+++++||++|+++...+++++.+++|.--.+ .-+.+.+|
T Consensus 213 ~~~~~~~~~~~~~~~~~s~aqlalaw~l~~p~v~~~I~G~~~~~ql~~n~~a~~~~~~~~~~~~l~~~~~-~~~~~~~~ 290 (292)
T PRK14863 213 ASGRLSRVRRMIAEGRSDPLQAALGFALSRPEGSAVLVGVNSAAELSAVVAAASSPPPDLDWDDMAIDDP-VALDPRRW 290 (292)
T ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHHHhcCCCccchhhccCChh-hccCcccc
Confidence 2345567788888999999999999999999999999999999999999999999999988887765443 33444444
No 13
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=3.4e-54 Score=383.48 Aligned_cols=258 Identities=32% Similarity=0.484 Sum_probs=230.6
Q ss_pred eeecCCCCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCEEecccCcCCCchHHHHHHHHhc------CCCC
Q 019200 10 RVKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ------LPRE 83 (344)
Q Consensus 10 ~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~Al~~Gin~~DtA~~Yg~g~sE~~lG~~l~~------~~R~ 83 (344)
...| ++|.++|.||||||+. +..++.+.++.|++.|+++||||..|+ +|+-+|++|++ .+|+
T Consensus 6 ~~~L-n~G~~mP~iGlGTw~~--------~~~~~~~aV~~Al~~GYRHIDtA~~Y~---NE~evG~aik~~i~~~~v~Re 73 (300)
T KOG1577|consen 6 TVKL-NNGFKMPIIGLGTWQS--------PPGQVAEAVKAAIKAGYRHIDTAHVYG---NEKEVGEAIKELLAEGGVKRE 73 (300)
T ss_pred eEec-cCCCccceeeeEeccc--------ChhhHHHHHHHHHHhCcceeechhhhC---ChHHHHHHHHHHhhhCCcchh
Confidence 6778 8999999999999972 668899999999999999999999999 79999999986 4899
Q ss_pred CeEEEecccccCCCCcccccCCChHHHHHHHHHHHhhcCCCceeEEEeccCCCC----------------CCHHHHHHHH
Q 019200 84 KIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS----------------VPIEETIGEM 147 (344)
Q Consensus 84 ~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~----------------~~~~~~~~~L 147 (344)
++||+||++... ..++.++.++++||++||+||+|+|++|||-.. .+..++|++|
T Consensus 74 diFiTSKlw~~~---------~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~tW~am 144 (300)
T KOG1577|consen 74 DIFITSKLWPTD---------HAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIETWKAM 144 (300)
T ss_pred hheeeeccCccc---------cChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHHHHHHH
Confidence 999999998653 678999999999999999999999999999643 3467899999
Q ss_pred HHHHHcCcccEEecCCCCHHHHHHHhhc--CCceeeeccccccccchhhhHHHHHHHhCCcEEecccCCcccCCCCCCCC
Q 019200 148 KKLVEEGKIKYIGLSEASPGTIRRAHAV--HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVE 225 (344)
Q Consensus 148 ~~l~~~G~ir~iGvs~~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G~L~~~~~~~ 225 (344)
+++++.|++|+||||||+..++++++.. .++.++|++++++.++ .+++++|+++||-|.|||||+.+.= + .
T Consensus 145 E~~~~~Gl~rsIGVSNF~~~~le~ll~~~ki~P~vnQvE~HP~~~Q--~~L~~fCk~~~I~v~AYSpLg~~~~-~----~ 217 (300)
T KOG1577|consen 145 EKLVDEGLVRSIGVSNFNIKQLEELLNLAKIKPAVNQVECHPYLQQ--KKLVEFCKSKGIVVTAYSPLGSPGR-G----S 217 (300)
T ss_pred HHHHHcCCceEeeeecCCHHHHHHHHhcCCCCCccceeeccCCcCh--HHHHHHHhhCCcEEEEecCCCCCCC-c----c
Confidence 9999999999999999999999999887 6789999999998886 5799999999999999999986531 0 0
Q ss_pred CCCCCcccccccCccccchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEeecCCCCHHHHHHHHhhcCCCCCH
Q 019200 226 NVPADSFLHFLPRFKGENLDRNKSIYFRIGNLAKKYNCTSAQLALAWVLGQGDDVVPIPGTTKMKNLDDNIDSLRIKLTK 305 (344)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~v~~vi~G~~~~~~l~~nl~a~~~~L~~ 305 (344)
+ .-.-+.+.+||++|+.|++|++|||+++++. +|||.++|++|+++|++.+++.||+
T Consensus 218 ~---------------------ll~~~~l~~iA~K~~kt~aQIlLrw~~q~g~--~vipKS~~~~Ri~eN~~vfdf~Lt~ 274 (300)
T KOG1577|consen 218 D---------------------LLEDPVLKEIAKKYNKTPAQILLRWALQRGV--SVIPKSSNPERIKENFKVFDFELTE 274 (300)
T ss_pred c---------------------cccCHHHHHHHHHhCCCHHHHHHHHHHhCCc--EEEeccCCHHHHHHHHhhccccCCH
Confidence 0 0111689999999999999999999999996 9999999999999999999999999
Q ss_pred HHHHHHHhhCCCC
Q 019200 306 EDLKEISDAVPIE 318 (344)
Q Consensus 306 e~~~~i~~~~~~~ 318 (344)
+|++.|+......
T Consensus 275 ed~~~i~~~~~~~ 287 (300)
T KOG1577|consen 275 EDMKKLDSLNSNE 287 (300)
T ss_pred HHHHHHhhccccc
Confidence 9999999877654
No 14
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=1.1e-53 Score=364.33 Aligned_cols=285 Identities=28% Similarity=0.425 Sum_probs=255.6
Q ss_pred CCeeecCCCCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCEEecccCcCCCchHHHHHHHHhc--CCCCCe
Q 019200 8 VPRVKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ--LPREKI 85 (344)
Q Consensus 8 m~~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~Al~~Gin~~DtA~~Yg~g~sE~~lG~~l~~--~~R~~~ 85 (344)
|++.++++.++.+|++.+|+|++.. |+ ++..+....++.|++.|||+||-|+.||++..|.++|.+|+- ..|+++
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d-~~--~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~p~lReki 77 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLND-WN--MSARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLAPGLREKI 77 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhh-cc--CCHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcChhhhhhe
Confidence 7889999999999999999999975 54 366899999999999999999999999999999999999986 469999
Q ss_pred EEEecccccCCCC---cccccCCChHHHHHHHHHHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecC
Q 019200 86 QVATKFGIAGIGV---AGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS 162 (344)
Q Consensus 86 ~I~tK~~~~~~~~---~~~~~~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs 162 (344)
.|.||+|...... ....+++|.++|..|+++||+||+|||+|++++|+||+..+.+|+.+++..|+++||||++|||
T Consensus 78 eivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd~eeVAeAf~~L~~sGKVr~fGVS 157 (298)
T COG4989 78 EIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMDAEEVAEAFTHLHKSGKVRHFGVS 157 (298)
T ss_pred EeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCCHHHHHHHHHHHHhcCCeeeeecC
Confidence 9999999765422 1236789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhhc--CCceeeeccccccccch-hhhHHHHHHHhCCcEEecccCCcccCCCCCCCCCCCCCcccccccCc
Q 019200 163 EASPGTIRRAHAV--HPITAVQMEWSLWTRDI-EEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSFLHFLPRF 239 (344)
Q Consensus 163 ~~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~-~~~l~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~ 239 (344)
||++.+++-+.+. .++.++|++.|++.... ..+.+++|+++.|..++||||++|.+...
T Consensus 158 Nf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~g------------------ 219 (298)
T COG4989 158 NFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLG------------------ 219 (298)
T ss_pred CCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCccccC------------------
Confidence 9999998777666 45788999999998764 36799999999999999999999866422
Q ss_pred cccchhhhHHHHHHHHHHHHHcC-CCHHHHHHHHHHhCCCCeEeecCCCCHHHHHHHHhhcCCCCCHHHHHHHHhhCCC
Q 019200 240 KGENLDRNKSIYFRIGNLAKKYN-CTSAQLALAWVLGQGDDVVPIPGTTKMKNLDDNIDSLRIKLTKEDLKEISDAVPI 317 (344)
Q Consensus 240 ~~~~~~~~~~~~~~l~~la~~~~-~s~~qlal~~~l~~~~v~~vi~G~~~~~~l~~nl~a~~~~L~~e~~~~i~~~~~~ 317 (344)
....++....+..+|.++| +|..++|++|++.+|.-..||+|+.+++++++.++|++..||.++|-+|..+..+
T Consensus 220 ----~~~~q~l~~~l~~ia~e~ga~s~~~VaiAWllR~Pa~~~PiiGt~~~eRi~~a~~Al~~~LtRqqWf~Iy~Aa~G 294 (298)
T COG4989 220 ----DDKFQRLRKVLDRIAEEYGAVSITAVAIAWLLRHPAKPQPIIGTGNLERIRAAIKALSLTLTRQQWFEIYTAAIG 294 (298)
T ss_pred ----CcchHHHHHHHHHHHHHhCcccHHHHHHHHHHhCcCcccceecCCCHHHHHHHHHHhhccccHHHHHHHHHHhcc
Confidence 1234667789999999999 7999999999999999999999999999999999999999999999999887644
No 15
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=2.1e-52 Score=380.80 Aligned_cols=254 Identities=31% Similarity=0.421 Sum_probs=223.3
Q ss_pred eeecCCCCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCEEecccCcCCCchHHHHHHHHhc--CCCCCeEE
Q 019200 10 RVKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ--LPREKIQV 87 (344)
Q Consensus 10 ~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~Al~~Gin~~DtA~~Yg~g~sE~~lG~~l~~--~~R~~~~I 87 (344)
+..| ++|+.||.||||||++ +.+++.+++++|++.|||+||||+.|| +|+.+|++|+. .+|++++|
T Consensus 6 ~~~l-~~g~~v~~lglG~~~~--------~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~R~~~~i 73 (275)
T PRK11565 6 VIKL-QDGNVMPQLGLGVWQA--------SNEEVITAIHKALEVGYRSIDTAAIYK---NEEGVGKALKEASVAREELFI 73 (275)
T ss_pred eEEc-CCCCccCCcceECccC--------CHHHHHHHHHHHHHhCCCEEEchhhhC---CHHHHHHHHHHcCCCHHHEEE
Confidence 3556 8999999999999864 457899999999999999999999998 69999999986 25899999
Q ss_pred EecccccCCCCcccccCCChHHHHHHHHHHHhhcCCCceeEEEeccCCCCC-CHHHHHHHHHHHHHcCcccEEecCCCCH
Q 019200 88 ATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSV-PIEETIGEMKKLVEEGKIKYIGLSEASP 166 (344)
Q Consensus 88 ~tK~~~~~~~~~~~~~~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~-~~~~~~~~L~~l~~~G~ir~iGvs~~~~ 166 (344)
+||++. .+++.+++++++||+|||+||||+|++|+|++.. ...++|++|++|+++|+||+||||||++
T Consensus 74 ~tK~~~-----------~~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~ 142 (275)
T PRK11565 74 TTKLWN-----------DDHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSIGVCNFQI 142 (275)
T ss_pred EEEecC-----------cchHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCeeEEeeccCCH
Confidence 999852 2467899999999999999999999999998653 5789999999999999999999999999
Q ss_pred HHHHHHhhcC--CceeeeccccccccchhhhHHHHHHHhCCcEEecccCCcccCCCCCCCCCCCCCcccccccCccccch
Q 019200 167 GTIRRAHAVH--PITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSFLHFLPRFKGENL 244 (344)
Q Consensus 167 ~~l~~~~~~~--~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (344)
+++++++... ++.++|++||++.+. .+++++|+++||++++|+||++|.- + .+.
T Consensus 143 ~~l~~~~~~~~v~~~~~Q~~~~~~~~~--~~~~~~~~~~~i~~~a~spl~~G~~-~-----------------~~~---- 198 (275)
T PRK11565 143 HHLQRLIDETGVTPVINQIELHPLMQQ--RQLHAWNATHKIQTESWSPLAQGGK-G-----------------VFD---- 198 (275)
T ss_pred HHHHHHHHhCCCCceeeeeecCCccch--HHHHHHHHHCCCEEEEEccCCCCCc-c-----------------ccc----
Confidence 9999887543 467899999999875 5799999999999999999997630 0 000
Q ss_pred hhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEeecCCCCHHHHHHHHhhcCCCCCHHHHHHHHhhCCCC
Q 019200 245 DRNKSIYFRIGNLAKKYNCTSAQLALAWVLGQGDDVVPIPGTTKMKNLDDNIDSLRIKLTKEDLKEISDAVPIE 318 (344)
Q Consensus 245 ~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~v~~vi~G~~~~~~l~~nl~a~~~~L~~e~~~~i~~~~~~~ 318 (344)
.+.+.++|+++|+|++|+||+|+++++. +||+|+++++|+++|+++.+++|+++++++|+++....
T Consensus 199 ------~~~l~~ia~~~g~s~aq~aL~w~l~~~~--~~I~g~~~~~~i~~n~~a~~~~Ls~~~~~~i~~~~~~~ 264 (275)
T PRK11565 199 ------QKVIRDLADKYGKTPAQIVIRWHLDSGL--VVIPKSVTPSRIAENFDVFDFRLDKDELGEIAKLDQGK 264 (275)
T ss_pred ------CHHHHHHHHHhCCCHHHHHHHHHHcCCC--EeeCCCCCHHHHHHHHhccCCCcCHHHHHHHHhhcccC
Confidence 1568999999999999999999999975 68999999999999999999999999999999998643
No 16
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=2.7e-52 Score=358.40 Aligned_cols=283 Identities=27% Similarity=0.420 Sum_probs=249.0
Q ss_pred CCCCeeecCCCCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCEEecccCcCCCchHHHHHHHHhcCCCCCe
Q 019200 6 HQVPRVKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKI 85 (344)
Q Consensus 6 ~~m~~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~Al~~Gin~~DtA~~Yg~g~sE~~lG~~l~~~~R~~~ 85 (344)
-.|.||.+|+||++||+||||+..++..|+.. ++++....+..|+++|||+|||++.||.++||..+|.++++.||+.+
T Consensus 20 rrmeyR~lg~tgl~VSk~~fGga~L~~~fgd~-~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~vPR~aY 98 (342)
T KOG1576|consen 20 RRMEYRQLGSTGLRVSKLGFGGAALGQLFGDE-DEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKDVPREAY 98 (342)
T ss_pred HHHHHhhcCCCcceeeeeeecchhhhhhcCCc-chhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhhCChhhe
Confidence 35899999999999999999999999988874 77888777777999999999999999999999999999999999999
Q ss_pred EEEecccccCCCCcccccCCChHHHHHHHHHHHhhcCCCceeEEEeccCCCC----CCHHHHHHHHHHHHHcCcccEEec
Q 019200 86 QVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS----VPIEETIGEMKKLVEEGKIKYIGL 161 (344)
Q Consensus 86 ~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~----~~~~~~~~~L~~l~~~G~ir~iGv 161 (344)
||+||+|....+. ...+|++++.+++|+++||+||++||+|++|+|..+.. ..+.|++.+|++||++||||+||+
T Consensus 99 yIaTKvgRy~ld~-~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~lk~~Gk~RfiGi 177 (342)
T KOG1576|consen 99 YIATKVGRYELDY-ANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEELKQEGKIRFIGI 177 (342)
T ss_pred eeeeeeeecccCc-cccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHHHHHHhcCceeEeee
Confidence 9999999765332 34589999999999999999999999999999998743 346799999999999999999999
Q ss_pred CCCCHHHHHHHhhc--CCceeee--ccccccccchhhhHHHHHHHhCCcEEecccCCcccCCCCCCCCCCCCCccccccc
Q 019200 162 SEASPGTIRRAHAV--HPITAVQ--MEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSFLHFLP 237 (344)
Q Consensus 162 s~~~~~~l~~~~~~--~~~~~~q--~~~n~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~ 237 (344)
+.++.+.+.++.+. +.++++- ..|++.+... ...+++.+.+|++|+..++++.|+|+.+.+++..|.
T Consensus 178 tgypldvl~~~ae~~~G~~dvvlsY~ry~l~d~tL-l~~~~~~~sk~vgVi~AsalsmgLLt~~gp~~wHPa-------- 248 (342)
T KOG1576|consen 178 TGYPLDVLTECAERGKGRLDVVLSYCRYTLNDNTL-LRYLKRLKSKGVGVINASALSMGLLTNQGPPPWHPA-------- 248 (342)
T ss_pred cccchHHHHHHHhcCCCceeeehhhhhhccccHHH-HHHHHHHHhcCceEEehhhHHHHHhhcCCCCCCCCC--------
Confidence 99999999999877 3466655 6777766543 467888889999999999999999998765555554
Q ss_pred CccccchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEeecCCCCHHHHHHHHhhcCCCCCH
Q 019200 238 RFKGENLDRNKSIYFRIGNLAKKYNCTSAQLALAWVLGQGDDVVPIPGTTKMKNLDDNIDSLRIKLTK 305 (344)
Q Consensus 238 ~~~~~~~~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~v~~vi~G~~~~~~l~~nl~a~~~~L~~ 305 (344)
..+..+...+..++|.+.|+.++.+|+.|+++.|+++++++|++|.++|+.|+++....||.
T Consensus 249 ------S~Elk~~a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~s~~~l~~nLdan~~~ls~ 310 (342)
T KOG1576|consen 249 ------SDELKEAAKAAAEYCQSRNVELGKLAMYYAMSLPGVSTVLVGMSSRQLLRINLDANFDRLSS 310 (342)
T ss_pred ------CHHHHHHHHHHHHHHHHcCccHHHHHHHHHHccCCcceEEecCchHHHHHHHHHhhhccccc
Confidence 24567777888999999999999999999999999999999999999999999987667777
No 17
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=2.5e-49 Score=355.69 Aligned_cols=271 Identities=27% Similarity=0.382 Sum_probs=243.0
Q ss_pred CCeeecCCCCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCEEecccCcCCCchHHHHHHHHhcCCCCCeEE
Q 019200 8 VPRVKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQV 87 (344)
Q Consensus 8 m~~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~Al~~Gin~~DtA~~Yg~g~sE~~lG~~l~~~~R~~~~I 87 (344)
|.||.+|+||.++|.||||+|++-..|...+|.+.+.+++++|+++|||+||||..|..|.||..+|++|++..|++|++
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~Rekv~L 80 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGYREKVKL 80 (391)
T ss_pred CchhhcCCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhcccceEEE
Confidence 78999999999999999999999877766679999999999999999999999999988889999999999988999999
Q ss_pred EecccccCCCCcccccCCChHHHHHHHHHHHhhcCCCceeEEEeccCCCCCCHH-----HHHHHHHHHHHcCcccEEecC
Q 019200 88 ATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIE-----ETIGEMKKLVEEGKIKYIGLS 162 (344)
Q Consensus 88 ~tK~~~~~~~~~~~~~~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~~~~-----~~~~~L~~l~~~G~ir~iGvs 162 (344)
+||+.... --+++.+++-++++|++|++||+|+|+||..+. ..++ ..++.+++++++|+||++|+|
T Consensus 81 aTKlp~~~--------~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~-e~~~k~~~~g~~df~~kak~eGkIr~~GFS 151 (391)
T COG1453 81 ATKLPSWP--------VKDREDMERIFNEQLEKLGTDYIDYYLIHGLNT-ETWEKIERLGVFDFLEKAKAEGKIRNAGFS 151 (391)
T ss_pred EeecCCcc--------ccCHHHHHHHHHHHHHHhCCchhhhhhhccccH-HHHHHHHccChHHHHHHHHhcCcEEEeeec
Confidence 99997543 257899999999999999999999999999976 3333 369999999999999999999
Q ss_pred CC-CHHHHHHHhhcCCceeeeccccccccchh--hhHHHHHHHhCCcEEecccCCcccCCCCCCCCCCCCCcccccccCc
Q 019200 163 EA-SPGTIRRAHAVHPITAVQMEWSLWTRDIE--EEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSFLHFLPRF 239 (344)
Q Consensus 163 ~~-~~~~l~~~~~~~~~~~~q~~~n~~~~~~~--~~l~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~ 239 (344)
.| +.+.+.+++...+++++|++||.++.... .+.+++|.++|++|+.++|+.+|-|..+. |
T Consensus 152 fHgs~e~~~~iv~a~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~~v-----P----------- 215 (391)
T COG1453 152 FHGSTEVFKEIVDAYPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYNV-----P----------- 215 (391)
T ss_pred CCCCHHHHHHHHhcCCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcccCC-----C-----------
Confidence 98 56788999999999999999999998643 37999999999999999999999887431 1
Q ss_pred cccchhhhHHHHHHHHHHHHHcC--CCHHHHHHHHHHhCCCCeEeecCCCCHHHHHHHHhhcCC--C-CCHHHHHHHHhh
Q 019200 240 KGENLDRNKSIYFRIGNLAKKYN--CTSAQLALAWVLGQGDDVVPIPGTTKMKNLDDNIDSLRI--K-LTKEDLKEISDA 314 (344)
Q Consensus 240 ~~~~~~~~~~~~~~l~~la~~~~--~s~~qlal~~~l~~~~v~~vi~G~~~~~~l~~nl~a~~~--~-L~~e~~~~i~~~ 314 (344)
+++.++++++. .||++.|+||+++||.|.+|++|+++++||+||++.++. | ||++|++.|+++
T Consensus 216 ------------~~~~~l~~~~~~~~sP~~wa~R~~~shp~V~~vlsGm~~~~~l~enLk~~~~~~p~lte~e~~il~~v 283 (391)
T COG1453 216 ------------EKLEELCRPASPKRSPAEWALRYLLSHPEVTTVLSGMNTPEQLEENLKIASELEPSLTEEELQILEKV 283 (391)
T ss_pred ------------HHHHHHHHhcCCCCCcHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHHHhhcCCccCHHHHHHHHHH
Confidence 67888998876 689999999999999999999999999999999998864 4 999998887776
Q ss_pred C
Q 019200 315 V 315 (344)
Q Consensus 315 ~ 315 (344)
.
T Consensus 284 ~ 284 (391)
T COG1453 284 E 284 (391)
T ss_pred H
Confidence 4
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=97.87 E-value=3.1e-05 Score=66.96 Aligned_cols=71 Identities=17% Similarity=0.194 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhc--CCceeeeccccccccchhhhHHHHHHHhCCcEEecc
Q 019200 140 IEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV--HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYS 211 (344)
Q Consensus 140 ~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~ 211 (344)
+.++|+.||+++.+|+|..||+|.+++.+|++++.. ..+.++|+...-++.-+ .++.+||.++.|.+..++
T Consensus 155 lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvP-pdLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 155 LKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVP-PDLQAFADRHDIQLLTHS 227 (285)
T ss_pred HHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccCC-HHHHHHhhhcceeeeecC
Confidence 457899999999999999999999999999999887 45677888777766544 589999999999998765
No 19
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=92.83 E-value=5.1 Score=37.17 Aligned_cols=154 Identities=12% Similarity=0.078 Sum_probs=95.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEecccCcCCC--chHHHHHHHHhcCCCCCeEEEecccccCCCCcccccCCChHHHHHHHHH
Q 019200 39 SEEDGISMIKHAFSKGITFFDTADVYGQN--ANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEA 116 (344)
Q Consensus 39 ~~~~~~~~l~~Al~~Gin~~DtA~~Yg~g--~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~ 116 (344)
+.++..+.++.+.+.|++.|+.-- |.. .....+. ++++.-. ++-|.-+... .++.+... .+-+
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~--g~~~~~d~~~v~-~lr~~~g-~~~l~vD~n~----------~~~~~~A~-~~~~ 198 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKL--GGDLEDDIERIR-AIREAAP-DARLRVDANQ----------GWTPEEAV-ELLR 198 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEe--CCChhhHHHHHH-HHHHhCC-CCeEEEeCCC----------CcCHHHHH-HHHH
Confidence 567778888889999999999742 321 1122222 3333112 5666666532 24444432 2333
Q ss_pred HHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCccc-EEecCCCCHHHHHHHhhcCCceeeecccccccc-chhh
Q 019200 117 SLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTR-DIEE 194 (344)
Q Consensus 117 SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~ 194 (344)
.|+.+++.+ +-.|-+. +-++.+.+|++...|. ..|=+-++.+.++++++....+++|+.-+.+-. ..-.
T Consensus 199 ~l~~~~l~~-----iEeP~~~----~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~~~~ 269 (316)
T cd03319 199 ELAELGVEL-----IEQPVPA----GDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYDGINIKLMKTGGLTEAL 269 (316)
T ss_pred HHHhcCCCE-----EECCCCC----CCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEeccccCCHHHHH
Confidence 555555444 3444322 2366778888877766 334455788899999998889999998666421 1126
Q ss_pred hHHHHHHHhCCcEEecccCCcc
Q 019200 195 EIIPLCRELGIGIVPYSPLGRG 216 (344)
Q Consensus 195 ~l~~~~~~~gi~v~a~~pl~~G 216 (344)
.+..+|+++|+.++..+-+..+
T Consensus 270 ~~~~~a~~~gi~~~~~~~~~~~ 291 (316)
T cd03319 270 RIADLARAAGLKVMVGCMVESS 291 (316)
T ss_pred HHHHHHHHcCCCEEEECchhhH
Confidence 7999999999999987655443
No 20
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=89.41 E-value=6 Score=35.42 Aligned_cols=107 Identities=17% Similarity=0.147 Sum_probs=71.1
Q ss_pred cCCChHHHHHHHHHHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcC-cccEEecCCCCHHHHHHHhhcCCceee
Q 019200 103 VKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG-KIKYIGLSEASPGTIRRAHAVHPITAV 181 (344)
Q Consensus 103 ~~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G-~ir~iGvs~~~~~~l~~~~~~~~~~~~ 181 (344)
..++.+...+-++ .|..+|+++|.+-..-.+......++.++.++.+.+.+ .++...++......++.+.+.. ++.+
T Consensus 14 ~~~s~e~~~~i~~-~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g-~~~i 91 (265)
T cd03174 14 ATFSTEDKLEIAE-ALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAG-VDEV 91 (265)
T ss_pred CCCCHHHHHHHHH-HHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCC-cCEE
Confidence 3467777666666 47889999988877655432222346788899999988 6777777765566777776654 4666
Q ss_pred eccccccc--------cc----h--hhhHHHHHHHhCCcEEecc
Q 019200 182 QMEWSLWT--------RD----I--EEEIIPLCRELGIGIVPYS 211 (344)
Q Consensus 182 q~~~n~~~--------~~----~--~~~l~~~~~~~gi~v~a~~ 211 (344)
++.+..-+ +. . -...++++++.|+.+...-
T Consensus 92 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 92 RIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 66554431 11 1 1467888999998877654
No 21
>PRK08392 hypothetical protein; Provisional
Probab=87.88 E-value=17 Score=31.56 Aligned_cols=151 Identities=17% Similarity=0.119 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHcCCCEEecccCcCCC---chHHHHHHHHhcCCCCCeEEEecccccCCCCcccccCCChHHHHHHHHHHH
Q 019200 42 DGISMIKHAFSKGITFFDTADVYGQN---ANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASL 118 (344)
Q Consensus 42 ~~~~~l~~Al~~Gin~~DtA~~Yg~g---~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~SL 118 (344)
...++++.|.+.|++.+=.++|.... .-+..+-+.-+-..+.++ .-..|.... ..++. ....++.+
T Consensus 15 ~~~e~v~~A~~~Gl~~i~iTdH~~~~~~~~~~~y~~~i~~l~~~~~i--~il~GiE~~--------~~~~~-~~~~~~~~ 83 (215)
T PRK08392 15 SVRDNIAEAERKGLRLVGISDHIHYFTPSKFNAYINEIRQWGEESEI--VVLAGIEAN--------ITPNG-VDITDDFA 83 (215)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCCccchhhHHHHHHHHHHHhhccCc--eEEEeEEee--------ecCCc-chhHHHHH
Confidence 36889999999999999776665321 011222221110112233 223332211 11111 12233444
Q ss_pred hhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecCCC-------C-HHHHHHHhhc---CCceeeeccccc
Q 019200 119 KRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA-------S-PGTIRRAHAV---HPITAVQMEWSL 187 (344)
Q Consensus 119 ~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~-------~-~~~l~~~~~~---~~~~~~q~~~n~ 187 (344)
++ .||+ +..+|........++-.+.+.++.+.+.+.-+|=-.. . ...++++++. .. ..++.|-
T Consensus 84 ~~--~D~v-I~SvH~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g---~~lEiNt 157 (215)
T PRK08392 84 KK--LDYV-IASVHEWFGRPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYG---KAFEISS 157 (215)
T ss_pred hh--CCEE-EEEeecCcCCcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhC---CEEEEeC
Confidence 43 4665 7788954333334566788888888898776664321 1 1222222222 11 1222222
Q ss_pred cccchhhhHHHHHHHhCCcEEe
Q 019200 188 WTRDIEEEIIPLCRELGIGIVP 209 (344)
Q Consensus 188 ~~~~~~~~l~~~~~~~gi~v~a 209 (344)
..+.+...+++.|++.|+.++.
T Consensus 158 ~~~~p~~~~l~~~~~~G~~~~i 179 (215)
T PRK08392 158 RYRVPDLEFIRECIKRGIKLTF 179 (215)
T ss_pred CCCCCCHHHHHHHHHcCCEEEE
Confidence 1222335688888888876543
No 22
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=84.89 E-value=13 Score=32.07 Aligned_cols=145 Identities=12% Similarity=0.009 Sum_probs=87.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEecccCcCCCchHHHHHHHHhc----CCCCCeEEEecccccCCCCcccccCCChHHHHHHH
Q 019200 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ----LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCC 114 (344)
Q Consensus 39 ~~~~~~~~l~~Al~~Gin~~DtA~~Yg~g~sE~~lG~~l~~----~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v 114 (344)
|.+++.++++.|++.|++..|.- +..+..++.. -.+.+++++-= ....+.+++.+
T Consensus 10 d~~~~~~~v~~~l~~g~~~~~i~--------~~~l~p~m~~iG~~w~~gei~va~~-------------~~a~~~~~~~l 68 (197)
T TIGR02370 10 EEDDVVEGAQKALDAGIDPIELI--------EKGLMAGMGVVGKLFEDGELFLPHV-------------MMSADAMLAGI 68 (197)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHH--------HHHHHHHHHHHHHHHcCCCccHHHH-------------HHHHHHHHHHH
Confidence 78999999999999999877753 3344444433 12445544211 13445566666
Q ss_pred HHHHhhcCCC----ceeEEEeccCCCCCCHHHHHHHHHHHHHcCc-ccEEecCCCCHHHHHHHhhcCCceeeeccccccc
Q 019200 115 EASLKRLDVD----YIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWT 189 (344)
Q Consensus 115 ~~SL~rLg~d----~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~ 189 (344)
+.....+... .---+++-.+..+...-...-.-.-|+..|. |.++|... +++.+.+.+....++++.+.+....
T Consensus 69 ~~l~~~~~~~~~~~~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~v-p~e~~v~~~~~~~pd~v~lS~~~~~ 147 (197)
T TIGR02370 69 KVLTPEMEKAVETEVLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDV-PIDTVVEKVKKEKPLMLTGSALMTT 147 (197)
T ss_pred HHHHHHhhccccCCCCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCC-CHHHHHHHHHHcCCCEEEEcccccc
Confidence 6665555421 1123344444333322333333445566786 77888655 7777878777788888888776654
Q ss_pred cchh-hhHHHHHHHhCC
Q 019200 190 RDIE-EEIIPLCRELGI 205 (344)
Q Consensus 190 ~~~~-~~l~~~~~~~gi 205 (344)
.... .++++.+++.+.
T Consensus 148 ~~~~~~~~i~~l~~~~~ 164 (197)
T TIGR02370 148 TMYGQKDINDKLKEEGY 164 (197)
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 4322 678888998854
No 23
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=82.69 E-value=25 Score=31.67 Aligned_cols=101 Identities=19% Similarity=0.151 Sum_probs=63.4
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEEe-ccCCCC-CC----HHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhcCCc
Q 019200 105 GAPDYVRSCCEASLKRLDVDYIDLYYQ-HRVDTS-VP----IEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPI 178 (344)
Q Consensus 105 ~~~~~i~~~v~~SL~rLg~d~iDl~~l-H~~~~~-~~----~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 178 (344)
++.+.+.+..++.+ +-|-+.||+--- -+|... .+ ++.+...++.+++.-.+- +.+-++.++.++++++...-
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~G~~ 98 (257)
T cd00739 21 LSLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVL-ISVDTFRAEVARAALEAGAD 98 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHhCCC
Confidence 55566655555443 458899998643 334432 12 233444566666653333 78889999999999987532
Q ss_pred eeeeccccccccchhhhHHHHHHHhCCcEEecc
Q 019200 179 TAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYS 211 (344)
Q Consensus 179 ~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~ 211 (344)
+-...+..... .++++.++++|..++++.
T Consensus 99 --iINdisg~~~~--~~~~~l~~~~~~~vV~m~ 127 (257)
T cd00739 99 --IINDVSGGSDD--PAMLEVAAEYGAPLVLMH 127 (257)
T ss_pred --EEEeCCCCCCC--hHHHHHHHHcCCCEEEEC
Confidence 22223333222 478999999999999954
No 24
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=81.97 E-value=30 Score=29.79 Aligned_cols=149 Identities=17% Similarity=0.125 Sum_probs=86.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEecccCcCCCchHHHHHHHHhc----CCCCCeEEEecccccCCCCcccccCCChHHHHHHH
Q 019200 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ----LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCC 114 (344)
Q Consensus 39 ~~~~~~~~l~~Al~~Gin~~DtA~~Yg~g~sE~~lG~~l~~----~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v 114 (344)
|.+.+.+++..+++.|+...|.- +.++..++++ -.+++++++-= .+..+.++..+
T Consensus 9 D~~~~~~~v~~~l~~g~~~~~i~--------~~~l~p~m~~vG~~w~~~~i~va~e-------------~~as~~~~~~l 67 (201)
T cd02070 9 DEEETVELVKKALEAGIDPQDII--------EEGLAPGMDIVGDKYEEGEIFVPEL-------------LMAADAMKAGL 67 (201)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHH--------HHHHHHHHHHHHHHHccCCeeHHHH-------------HHHHHHHHHHH
Confidence 78899999999999998766542 2344444433 12444544322 13334455555
Q ss_pred HHHHhhcCCCc---eeEEEeccCCCCCCHHHHHHHHHHHHHcCc-ccEEecCCCCHHHHHHHhhcCCceeeecccccccc
Q 019200 115 EASLKRLDVDY---IDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWTR 190 (344)
Q Consensus 115 ~~SL~rLg~d~---iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~ 190 (344)
......+.... ---+++-.+..+...-...=.-.-|+..|. |.++| .+.+++.+.+.+....++++-+.++.-..
T Consensus 68 ~~l~~~~~~~~~~~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG-~~~p~~~l~~~~~~~~~d~v~lS~~~~~~ 146 (201)
T cd02070 68 DLLKPLLGKSKSAKKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLG-RDVPPEEFVEAVKEHKPDILGLSALMTTT 146 (201)
T ss_pred HHHHHHHhhcCCCCCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECC-CCCCHHHHHHHHHHcCCCEEEEecccccc
Confidence 55555554322 123444544433332233333345667787 56778 45577888887777778888877755443
Q ss_pred ch-hhhHHHHHHHhC----CcEEe
Q 019200 191 DI-EEEIIPLCRELG----IGIVP 209 (344)
Q Consensus 191 ~~-~~~l~~~~~~~g----i~v~a 209 (344)
-. -.++++.+++.+ +.++.
T Consensus 147 ~~~~~~~i~~lr~~~~~~~~~i~v 170 (201)
T cd02070 147 MGGMKEVIEALKEAGLRDKVKVMV 170 (201)
T ss_pred HHHHHHHHHHHHHCCCCcCCeEEE
Confidence 22 257888888775 45554
No 25
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=81.12 E-value=41 Score=30.38 Aligned_cols=135 Identities=13% Similarity=0.178 Sum_probs=79.2
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhc--CCceeee
Q 019200 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV--HPITAVQ 182 (344)
Q Consensus 105 ~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~--~~~~~~q 182 (344)
.+.+.+.+..++. ..-|-+.||+-.= +......+.+...++.+++.-.+ -+-+-+++++.++++++. +..-++-
T Consensus 22 ~d~~~i~~~A~~~-~~~GAdiIDVg~~--~~~~eE~~r~~~~v~~l~~~~~~-plsIDT~~~~v~eaaL~~~~G~~iINs 97 (261)
T PRK07535 22 KDAAFIQKLALKQ-AEAGADYLDVNAG--TAVEEEPETMEWLVETVQEVVDV-PLCIDSPNPAAIEAGLKVAKGPPLINS 97 (261)
T ss_pred CCHHHHHHHHHHH-HHCCCCEEEECCC--CCchhHHHHHHHHHHHHHHhCCC-CEEEeCCCHHHHHHHHHhCCCCCEEEe
Confidence 4455555555544 3568899998743 22223344556666666654222 478889999999999987 4332222
Q ss_pred ccccccccchhhhHHHHHHHhCCcEEecccCCcccCCCCCCCCCCCCCcccccccCccccchhhhHHHHHHHHHHHHHcC
Q 019200 183 MEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSFLHFLPRFKGENLDRNKSIYFRIGNLAKKYN 262 (344)
Q Consensus 183 ~~~n~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~ 262 (344)
.|..... ...+++.++++|..+++..--..|. |. ..+.....+..+-+.|.++|
T Consensus 98 --Is~~~~~-~~~~~~l~~~~g~~vv~m~~~~~g~----------P~-------------t~~~~~~~l~~~v~~a~~~G 151 (261)
T PRK07535 98 --VSAEGEK-LEVVLPLVKKYNAPVVALTMDDTGI----------PK-------------DAEDRLAVAKELVEKADEYG 151 (261)
T ss_pred --CCCCCcc-CHHHHHHHHHhCCCEEEEecCCCCC----------CC-------------CHHHHHHHHHHHHHHHHHcC
Confidence 2332211 2478999999999999764322332 10 11223455556666777888
Q ss_pred CCHHHHH
Q 019200 263 CTSAQLA 269 (344)
Q Consensus 263 ~s~~qla 269 (344)
+++.++.
T Consensus 152 I~~~~Ii 158 (261)
T PRK07535 152 IPPEDIY 158 (261)
T ss_pred CCHhHEE
Confidence 7666643
No 26
>PRK07945 hypothetical protein; Provisional
Probab=80.43 E-value=52 Score=30.91 Aligned_cols=107 Identities=17% Similarity=0.108 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHcCCCEEecccCcCC-----CchHHHHHHHHhcC-----CCCCeEEEecccccCCCCcccccCCChHHH
Q 019200 41 EDGISMIKHAFSKGITFFDTADVYGQ-----NANEVLLGKALKQL-----PREKIQVATKFGIAGIGVAGVIVKGAPDYV 110 (344)
Q Consensus 41 ~~~~~~l~~Al~~Gin~~DtA~~Yg~-----g~sE~~lG~~l~~~-----~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i 110 (344)
....+++++|.+.|+..+=.++|... +.+...+-+.++.. .-.+ |--+.|.... +.++.+.+..
T Consensus 111 ~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~ky~~--I~Il~GiE~d----~~~~g~~~~~ 184 (335)
T PRK07945 111 SPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEELAP--FRILTGIEVD----ILDDGSLDQE 184 (335)
T ss_pred CCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHhcCC--ceEEEEeEec----ccCCCCcchh
Confidence 44789999999999998877766432 22222222222221 1112 3333333221 0111222333
Q ss_pred HHHHHHHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEec
Q 019200 111 RSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGL 161 (344)
Q Consensus 111 ~~~v~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGv 161 (344)
++.|+. .||+ +..+|+.... +.++..+.+.+..+.+.+..+|=
T Consensus 185 ----~~~l~~--~D~v-IgSvH~~~~~-~~~~~~~~l~~ai~~~~~dvlgH 227 (335)
T PRK07945 185 ----PELLDR--LDVV-VASVHSKLRM-DAAAMTRRMLAAVANPHTDVLGH 227 (335)
T ss_pred ----HHHHHh--CCEE-EEEeecCCCC-CHHHHHHHHHHHhcCCCCeEEec
Confidence 233333 4666 7788986432 34556678888888888887774
No 27
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=79.66 E-value=55 Score=30.75 Aligned_cols=153 Identities=12% Similarity=0.123 Sum_probs=90.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEecc--cCcCC----CchHHHHHHHHhcCCCCCeEEEecccccCCCCcccccCCChHHHHH
Q 019200 39 SEEDGISMIKHAFSKGITFFDTA--DVYGQ----NANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRS 112 (344)
Q Consensus 39 ~~~~~~~~l~~Al~~Gin~~DtA--~~Yg~----g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~ 112 (344)
+.++..+.++.+.+.|++.|-.- ..|.. -...+.+ +++++.-.+++.|..... ..++.+...+
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v-~~ir~~~g~~~~l~vDaN----------~~~~~~~a~~ 207 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARV-RAVREAVGPDVDLMVDAN----------GRWDLAEAIR 207 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHH-HHHHHhhCCCCEEEEECC----------CCCCHHHHHH
Confidence 45777788888889999988742 22210 0011222 233332224555555442 1245444432
Q ss_pred HHHHHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCccc-EEecCCCCHHHHHHHhhcCCceeeecccccccc-
Q 019200 113 CCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTR- 190 (344)
Q Consensus 113 ~v~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~- 190 (344)
-+++|. ..++.++..|-+. +.++.+.+|++.-.+. ..|=+-++++.+.++++...++++|+.....-.
T Consensus 208 ----~~~~l~--~~~i~~iEqP~~~----~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi 277 (357)
T cd03316 208 ----LARALE--EYDLFWFEEPVPP----DDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKVGGI 277 (357)
T ss_pred ----HHHHhC--ccCCCeEcCCCCc----cCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCCCEEecCccccCCH
Confidence 333332 2345556666433 2456677888775555 333455788999999988888999998666431
Q ss_pred chhhhHHHHHHHhCCcEEeccc
Q 019200 191 DIEEEIIPLCRELGIGIVPYSP 212 (344)
Q Consensus 191 ~~~~~l~~~~~~~gi~v~a~~p 212 (344)
.....+...|+++|+.++..+.
T Consensus 278 ~~~~~i~~~a~~~g~~~~~~~~ 299 (357)
T cd03316 278 TEAKKIAALAEAHGVRVAPHGA 299 (357)
T ss_pred HHHHHHHHHHHHcCCeEeccCC
Confidence 1125799999999999887653
No 28
>PRK08609 hypothetical protein; Provisional
Probab=79.13 E-value=77 Score=32.16 Aligned_cols=151 Identities=17% Similarity=0.192 Sum_probs=79.5
Q ss_pred HHHHHHHHHHcCCCEEecccCcCC-----CchHHHHHHHHhc---CCC--CCeEEEecccccCCCCcccccCCChHHHHH
Q 019200 43 GISMIKHAFSKGITFFDTADVYGQ-----NANEVLLGKALKQ---LPR--EKIQVATKFGIAGIGVAGVIVKGAPDYVRS 112 (344)
Q Consensus 43 ~~~~l~~Al~~Gin~~DtA~~Yg~-----g~sE~~lG~~l~~---~~R--~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~ 112 (344)
..++++.|.+.|+..+=.++|+.. |.+...+-..++. .++ .++.| ..|... ++.++....
T Consensus 351 leemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l~~~~~~i~I--l~GiEv--------~i~~~g~~d 420 (570)
T PRK08609 351 IEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKALNEKYPEIDI--LSGIEM--------DILPDGSLD 420 (570)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHHHHhcCCCeE--EEEEEE--------eecCCcchh
Confidence 566999999999999988888631 2233333332221 111 12222 223221 111111122
Q ss_pred HHHHHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecCC------CC--H---HHHHHHhhcCCceee
Q 019200 113 CCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE------AS--P---GTIRRAHAVHPITAV 181 (344)
Q Consensus 113 ~v~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~------~~--~---~~l~~~~~~~~~~~~ 181 (344)
-.+..|+. .||+ +..+|++.. .+.++.++.+.++.+.|.+.-||=-. .. . +.+.+++.... .++
T Consensus 421 ~~~~~L~~--~D~v-I~SvH~~~~-~~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G-~~l 495 (570)
T PRK08609 421 YDDEVLAE--LDYV-IAAIHSSFS-QSEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETN-TAL 495 (570)
T ss_pred hcHHHHHh--hCEE-EEEeecCCC-CCHHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhC-CEE
Confidence 22334544 4666 788897643 34567788889988888877666443 11 1 22222212122 245
Q ss_pred eccccccccchhhhHHHHHHHhCCcEE
Q 019200 182 QMEWSLWTRDIEEEIIPLCRELGIGIV 208 (344)
Q Consensus 182 q~~~n~~~~~~~~~l~~~~~~~gi~v~ 208 (344)
|+.-+.+.......++..|.+.|+.+.
T Consensus 496 EINa~~~r~~~~~~~~~~~~e~Gv~i~ 522 (570)
T PRK08609 496 ELNANPNRLDLSAEHLKKAQEAGVKLA 522 (570)
T ss_pred EEcCCccccCccHHHHHHHHHcCCEEE
Confidence 555544433333567888888887654
No 29
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=78.99 E-value=42 Score=30.13 Aligned_cols=102 Identities=19% Similarity=0.138 Sum_probs=66.5
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEEe-ccCCCC-----CCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhcCCc
Q 019200 105 GAPDYVRSCCEASLKRLDVDYIDLYYQ-HRVDTS-----VPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPI 178 (344)
Q Consensus 105 ~~~~~i~~~v~~SL~rLg~d~iDl~~l-H~~~~~-----~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 178 (344)
.+.+.+.+..++.+ .-|-|.||+--- -+|... ..++.+...++.+++.-.+ -|.+-++.++.++++++....
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~-piSIDT~~~~v~~aaL~~g~~ 98 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDV-PISVDTFNAEVAEAALKAGAD 98 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCcHHHHHHHHHhCCC
Confidence 56677766666554 568899999743 345421 1223456667777665233 388899999999999988632
Q ss_pred eeeeccccccccchhhhHHHHHHHhCCcEEeccc
Q 019200 179 TAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSP 212 (344)
Q Consensus 179 ~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~p 212 (344)
+-...+....+ .++++.++++|..++....
T Consensus 99 --iINdis~~~~~--~~~~~l~~~~~~~vV~m~~ 128 (258)
T cd00423 99 --IINDVSGGRGD--PEMAPLAAEYGAPVVLMHM 128 (258)
T ss_pred --EEEeCCCCCCC--hHHHHHHHHcCCCEEEECc
Confidence 22223333211 4689999999999998754
No 30
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=77.74 E-value=60 Score=30.14 Aligned_cols=133 Identities=11% Similarity=0.001 Sum_probs=84.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEec---cc-----CcCCC----chHHHHHHHHhcC---CCCCeEEEecccccCCCCccccc
Q 019200 39 SEEDGISMIKHAFSKGITFFDT---AD-----VYGQN----ANEVLLGKALKQL---PREKIQVATKFGIAGIGVAGVIV 103 (344)
Q Consensus 39 ~~~~~~~~l~~Al~~Gin~~Dt---A~-----~Yg~g----~sE~~lG~~l~~~---~R~~~~I~tK~~~~~~~~~~~~~ 103 (344)
+.++..+....+.+.|+..||- ++ .||.| ..-+.+.+.++.. -..++-|+.|+.....
T Consensus 73 ~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~------- 145 (312)
T PRK10550 73 YPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWD------- 145 (312)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCC-------
Confidence 6677777778888899999993 22 36655 2334555555442 1124678888754321
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEeccCCCCCCHH--H-HHHHHHHHHHcCcccEEecCCC-CHHHHHHHhhcCCce
Q 019200 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIE--E-TIGEMKKLVEEGKIKYIGLSEA-SPGTIRRAHAVHPIT 179 (344)
Q Consensus 104 ~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~~~~--~-~~~~L~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~ 179 (344)
+.+.. ..+-+.++..| +|.+.+|.-....... . -|+...++++.-.|--||..+. +++..+++++....+
T Consensus 146 --~~~~~-~~~a~~l~~~G---vd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~D 219 (312)
T PRK10550 146 --SGERK-FEIADAVQQAG---ATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCD 219 (312)
T ss_pred --CchHH-HHHHHHHHhcC---CCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCC
Confidence 11222 34555677777 5777788654322111 1 3778888888777888888764 788888888777778
Q ss_pred eeecc
Q 019200 180 AVQME 184 (344)
Q Consensus 180 ~~q~~ 184 (344)
.+++-
T Consensus 220 gVmiG 224 (312)
T PRK10550 220 AVMIG 224 (312)
T ss_pred EEEEc
Confidence 77774
No 31
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=76.94 E-value=6.1 Score=33.84 Aligned_cols=151 Identities=18% Similarity=0.199 Sum_probs=95.1
Q ss_pred HHHHHHHHHcCCCEEecccCcCCCchHHHHHHHHhcCCCCCeEEEecccccCCCCcccccCCChHHHHHHH---------
Q 019200 44 ISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCC--------- 114 (344)
Q Consensus 44 ~~~l~~Al~~Gin~~DtA~~Yg~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v--------- 114 (344)
.+++..-++-|-+.+|-+-..| .+-+.|++. .++.. .+...+.+.+.+++
T Consensus 4 ~~~I~~~I~pgsrVLDLGCGdG------~LL~~L~~~--k~v~g-------------~GvEid~~~v~~cv~rGv~Viq~ 62 (193)
T PF07021_consen 4 LQIIAEWIEPGSRVLDLGCGDG------ELLAYLKDE--KQVDG-------------YGVEIDPDNVAACVARGVSVIQG 62 (193)
T ss_pred HHHHHHHcCCCCEEEecCCCch------HHHHHHHHh--cCCeE-------------EEEecCHHHHHHHHHcCCCEEEC
Confidence 3566677788999999765444 344556531 12210 11234555555554
Q ss_pred --HHHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhh--cCCceeeecccccccc
Q 019200 115 --EASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHA--VHPITAVQMEWSLWTR 190 (344)
Q Consensus 115 --~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~--~~~~~~~q~~~n~~~~ 190 (344)
+..|..+.-+.+|.+.+...= ..+....+.|+++.+-|+---|++.||.-+..+.-+- -.-+..-.++|+-++.
T Consensus 63 Dld~gL~~f~d~sFD~VIlsqtL--Q~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdT 140 (193)
T PF07021_consen 63 DLDEGLADFPDQSFDYVILSQTL--QAVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDT 140 (193)
T ss_pred CHHHhHhhCCCCCccEEehHhHH--HhHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCC
Confidence 445555555566666554321 1123345568888888998889999998877655433 2334567788887765
Q ss_pred c-h----hhhHHHHHHHhCCcEEecccCCccc
Q 019200 191 D-I----EEEIIPLCRELGIGIVPYSPLGRGF 217 (344)
Q Consensus 191 ~-~----~~~l~~~~~~~gi~v~a~~pl~~G~ 217 (344)
. . -++..++|++.|+.++-..++..+.
T Consensus 141 PNih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 141 PNIHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred CCcccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 3 1 1688999999999999998888654
No 32
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=75.44 E-value=9.8 Score=33.06 Aligned_cols=68 Identities=15% Similarity=0.203 Sum_probs=48.0
Q ss_pred HHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecC-CCCHHHHHHHhhcCCceeeecccc
Q 019200 117 SLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPGTIRRAHAVHPITAVQMEWS 186 (344)
Q Consensus 117 SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~n 186 (344)
.+..+|.|++=+++........+.+.. ..+.+.. .+.++.+||. |.+++.+.++.+...++++|++-+
T Consensus 16 ~~~~~GaD~iGfIf~~~SpR~V~~~~a-~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~~~~~d~vQLHG~ 84 (207)
T PRK13958 16 AASQLPIDAIGFIHYEKSKRHQTITQI-KKLASAV-PNHIDKVCVVVNPDLTTIEHILSNTSINTIQLHGT 84 (207)
T ss_pred HHHHcCCCEEEEecCCCCcccCCHHHH-HHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhCCCCEEEECCC
Confidence 455699999999855544444544443 3333322 2568899996 778899999999888999999753
No 33
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=74.18 E-value=21 Score=34.15 Aligned_cols=81 Identities=12% Similarity=0.154 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHcCCCEEecccCcCCCchHHHHHHHHhcCCCCCeEEEecccccCCCCcccccCCChHHHHHHHHHHHhh
Q 019200 41 EDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKR 120 (344)
Q Consensus 41 ~~~~~~l~~Al~~Gin~~DtA~~Yg~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~SL~r 120 (344)
.....++++|++.|++++||+.+... ..-+.... .+..+.+..-+|..+. .+--.....+++-.+
T Consensus 79 ~~~~~i~ka~i~~gv~yvDts~~~~~---~~~~~~~a---~~Agit~v~~~G~dPG--------i~nv~a~~a~~~~~~- 143 (389)
T COG1748 79 FVDLTILKACIKTGVDYVDTSYYEEP---PWKLDEEA---KKAGITAVLGCGFDPG--------ITNVLAAYAAKELFD- 143 (389)
T ss_pred hhhHHHHHHHHHhCCCEEEcccCCch---hhhhhHHH---HHcCeEEEcccCcCcc--------hHHHHHHHHHHHhhc-
Confidence 44568999999999999999976542 22222222 3456777777765431 222223333332222
Q ss_pred cCCCceeEEEeccCCCC
Q 019200 121 LDVDYIDLYYQHRVDTS 137 (344)
Q Consensus 121 Lg~d~iDl~~lH~~~~~ 137 (344)
.+++||+|..+.|+..
T Consensus 144 -~i~si~iy~g~~g~~~ 159 (389)
T COG1748 144 -EIESIDIYVGGLGEHG 159 (389)
T ss_pred -cccEEEEEEecCCCCC
Confidence 5899999999998754
No 34
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=73.83 E-value=38 Score=31.44 Aligned_cols=106 Identities=15% Similarity=0.211 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHcCCCEEecccCcCCCchHHHHHHHHhcCCCCCeEEEecccccCCCCcccccCCChHHHHHHHHHHHhhc
Q 019200 42 DGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRL 121 (344)
Q Consensus 42 ~~~~~l~~Al~~Gin~~DtA~~Yg~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~SL~rL 121 (344)
.-+++|+.+-++|| .+|.++. +++.+=+++.- .+..+|+|......- .+..++--.+++++..++=
T Consensus 150 ~Gk~lV~~~N~LgI-iiDlSH~-----s~kt~~Dvl~~--s~~PviaSHSN~~al------~~h~RNl~D~qlkaI~~~g 215 (313)
T COG2355 150 FGKELVREMNELGI-IIDLSHL-----SDKTFWDVLDL--SKAPVVASHSNARAL------VDHPRNLSDEQLKAIAETG 215 (313)
T ss_pred HHHHHHHHHHhcCC-EEEeccc-----CCccHHHHHhc--cCCceEEecCCchhc------cCCCCCCCHHHHHHHHhcC
Confidence 46899999999999 9999876 57777777763 566788877655432 2233444445556666665
Q ss_pred CCCceeEEEeccC-----CCCCCHHHHHHHHHHHHHcCcccEEecCC
Q 019200 122 DVDYIDLYYQHRV-----DTSVPIEETIGEMKKLVEEGKIKYIGLSE 163 (344)
Q Consensus 122 g~d~iDl~~lH~~-----~~~~~~~~~~~~L~~l~~~G~ir~iGvs~ 163 (344)
|+ |.+.++-.. .+..++++.++.++.+++.+=+++||+.+
T Consensus 216 Gv--Igv~~~~~fl~~~~~~~atldd~v~hI~h~v~~~G~dhVglGs 260 (313)
T COG2355 216 GV--IGVNFIPAFLRPGGAARATLDDLVRHIDHFVELVGIDHVGLGS 260 (313)
T ss_pred CE--EEEEeehhhccCCCCCCCCHHHHHHHHHHHHHhcCcceeEecc
Confidence 53 555444322 23558899999999999999999999975
No 35
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=73.26 E-value=54 Score=29.51 Aligned_cols=68 Identities=10% Similarity=-0.007 Sum_probs=42.3
Q ss_pred HHHHHHHcCcccEEec-CCCCHHHHHHHhhc--CCceeeeccccccccchhhhHHHHHHHhCCcEEecccCC
Q 019200 146 EMKKLVEEGKIKYIGL-SEASPGTIRRAHAV--HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLG 214 (344)
Q Consensus 146 ~L~~l~~~G~ir~iGv-s~~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~pl~ 214 (344)
.|.+-.++|+. .+|+ .......+.++... ..+.++-.+.++++......++..|+..|+..+.+-|-.
T Consensus 9 ~lk~~l~~g~~-~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~ 79 (256)
T PRK10558 9 KFKAALAAKQV-QIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTN 79 (256)
T ss_pred HHHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCC
Confidence 35555556874 4554 22222334444444 445556668888887655678889999999988876554
No 36
>PRK13796 GTPase YqeH; Provisional
Probab=72.32 E-value=72 Score=30.31 Aligned_cols=120 Identities=14% Similarity=0.182 Sum_probs=79.2
Q ss_pred CCHHHHHHHHHHHHHcC---CCEEecccCcCCCchHHHHHHHHhcCCCCCeEEEecccccCCCCcccccCCChHHHHHHH
Q 019200 38 VSEEDGISMIKHAFSKG---ITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCC 114 (344)
Q Consensus 38 ~~~~~~~~~l~~Al~~G---in~~DtA~~Yg~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v 114 (344)
++.++..++++..-+.- +-.+|..+.-+. -...+.+.+. .+.-++|.+|.-... .....+.+.+-+
T Consensus 54 ~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s--~~~~L~~~~~--~kpviLViNK~DLl~-------~~~~~~~i~~~l 122 (365)
T PRK13796 54 LTDDDFLKLLNGIGDSDALVVNVVDIFDFNGS--WIPGLHRFVG--NNPVLLVGNKADLLP-------KSVKKNKVKNWL 122 (365)
T ss_pred CCHHHHHHHHHhhcccCcEEEEEEECccCCCc--hhHHHHHHhC--CCCEEEEEEchhhCC-------CccCHHHHHHHH
Confidence 56677778888777655 556786553332 2333444432 455678999986532 123455666666
Q ss_pred HHHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecCCCCHHHH
Q 019200 115 EASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTI 169 (344)
Q Consensus 115 ~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l 169 (344)
+...+.+|....|++.+..-. ...++++++.+.++.+.+.+-.+|.+|..-..+
T Consensus 123 ~~~~k~~g~~~~~v~~vSAk~-g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTL 176 (365)
T PRK13796 123 RQEAKELGLRPVDVVLISAQK-GHGIDELLEAIEKYREGRDVYVVGVTNVGKSTL 176 (365)
T ss_pred HHHHHhcCCCcCcEEEEECCC-CCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHH
Confidence 666777776555777776543 345788889998887788899999999877544
No 37
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=70.88 E-value=95 Score=29.27 Aligned_cols=38 Identities=24% Similarity=0.187 Sum_probs=19.5
Q ss_pred HHHHHHHcCcccEEecCC-CCHHHHHHHhhcCCceeeec
Q 019200 146 EMKKLVEEGKIKYIGLSE-ASPGTIRRAHAVHPITAVQM 183 (344)
Q Consensus 146 ~L~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~ 183 (344)
..+++++.=.+--++.-. .+++.++++++....+.+++
T Consensus 267 ~~~~ik~~v~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~ 305 (353)
T cd02930 267 ATAKLKRAVDIPVIASNRINTPEVAERLLADGDADMVSM 305 (353)
T ss_pred HHHHHHHhCCCCEEEcCCCCCHHHHHHHHHCCCCChhHh
Confidence 344455544444444433 35566666666555555544
No 38
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=70.23 E-value=2.4 Score=39.77 Aligned_cols=55 Identities=16% Similarity=0.283 Sum_probs=35.9
Q ss_pred HcCcccEEecCCCCHHHHHHHhhcCC-ceeeeccccccccchhhhHHHHHHHhCCc
Q 019200 152 EEGKIKYIGLSEASPGTIRRAHAVHP-ITAVQMEWSLWTRDIEEEIIPLCRELGIG 206 (344)
Q Consensus 152 ~~G~ir~iGvs~~~~~~l~~~~~~~~-~~~~q~~~n~~~~~~~~~l~~~~~~~gi~ 206 (344)
=-|+|||+||--++++.+.++..... -+..+.+..++....+..+++.+++.||+
T Consensus 262 CVGriRYlGVlLYDaDrv~eaAs~~~e~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 262 CVGRIRYLGVLLYDADRVEEAASTENEKDLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred hhcceeeeeeeeecHHHHHHhhcCccHHHHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 35999999999999999988876532 23333333333322234577777777765
No 39
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=69.57 E-value=76 Score=27.64 Aligned_cols=145 Identities=12% Similarity=-0.030 Sum_probs=81.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEecccCcCCCchHHHHHHHHhc----CCCCCeEEEecccccCCCCcccccCCChHHHHHHH
Q 019200 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ----LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCC 114 (344)
Q Consensus 39 ~~~~~~~~l~~Al~~Gin~~DtA~~Yg~g~sE~~lG~~l~~----~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v 114 (344)
|.+++.++++.|++.|+...|+- +..+-.++.+ ..+.+++++-= .++.+.++..+
T Consensus 13 D~~~~~~~l~~al~~~~~~~~ii--------~~~l~p~m~~vG~~w~~gei~vaqe-------------~~as~~~~~~l 71 (213)
T cd02069 13 IRDGIEEDTEEARQQYARPLEII--------NGPLMDGMKVVGDLFGAGKMFLPQV-------------LKSARVMKAAV 71 (213)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHH--------HHHHHHHHHHHHHHHccCCCcHHHH-------------HHHHHHHHHHH
Confidence 78999999999999987665542 2334444433 13455554422 13445566666
Q ss_pred HHHHhhcCCC-----ceeEEEeccCCCCCCHHHHHHHHHHHHHcCc-ccEEecCCCCHHHHHHHhhcCCceeeecccccc
Q 019200 115 EASLKRLDVD-----YIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPGTIRRAHAVHPITAVQMEWSLW 188 (344)
Q Consensus 115 ~~SL~rLg~d-----~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~ 188 (344)
.....++... ..--+++-.+..+..--...=.-.-|+..|. |-++|... +++.+.+......++++.+....-
T Consensus 72 ~~l~~~l~~~~~~~~~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~v-p~e~~v~~~~~~~~~~V~lS~~~~ 150 (213)
T cd02069 72 AYLEPYMEKEKGENSSKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMV-PIEKILEAAKEHKADIIGLSGLLV 150 (213)
T ss_pred HHHHHHHhhccccCCCCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCC-CHHHHHHHHHHcCCCEEEEccchh
Confidence 6653333211 1112334444333222222222233556776 77888655 667777777767778887766654
Q ss_pred ccchh-hhHHHHHHHhCC
Q 019200 189 TRDIE-EEIIPLCRELGI 205 (344)
Q Consensus 189 ~~~~~-~~l~~~~~~~gi 205 (344)
..-.. +++++.+++.+.
T Consensus 151 ~~~~~~~~~i~~L~~~~~ 168 (213)
T cd02069 151 PSLDEMVEVAEEMNRRGI 168 (213)
T ss_pred ccHHHHHHHHHHHHhcCC
Confidence 33222 678888888765
No 40
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=68.88 E-value=99 Score=28.69 Aligned_cols=149 Identities=15% Similarity=0.154 Sum_probs=82.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEecccCcCCCc------hHHHHHHHHhcC-CCCCeEEEecccccCCCCcccccCCChHHH
Q 019200 38 VSEEDGISMIKHAFSKGITFFDTADVYGQNA------NEVLLGKALKQL-PREKIQVATKFGIAGIGVAGVIVKGAPDYV 110 (344)
Q Consensus 38 ~~~~~~~~~l~~Al~~Gin~~DtA~~Yg~g~------sE~~lG~~l~~~-~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i 110 (344)
.+.++..++++.+.+.|++.|.-. | |+ -.+++-. +++. .-..+.|+|-... +
T Consensus 49 ls~eei~~~i~~~~~~gi~~I~~t---G-GEPll~~~l~~li~~-i~~~~~~~~i~itTNG~l----------------l 107 (331)
T PRK00164 49 LSLEEIERLVRAFVALGVRKVRLT---G-GEPLLRKDLEDIIAA-LAALPGIRDLALTTNGYL----------------L 107 (331)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE---C-CCCcCccCHHHHHHH-HHhcCCCceEEEEcCchh----------------H
Confidence 678899999999999999888743 2 21 1222222 2221 1235666666311 1
Q ss_pred HHHHHHHHhhcCCCceeEEEeccCCC--------CCCHHHHHHHHHHHHHcCc----ccEEecCCCCHHHHHHHhhc---
Q 019200 111 RSCCEASLKRLDVDYIDLYYQHRVDT--------SVPIEETIGEMKKLVEEGK----IKYIGLSEASPGTIRRAHAV--- 175 (344)
Q Consensus 111 ~~~v~~SL~rLg~d~iDl~~lH~~~~--------~~~~~~~~~~L~~l~~~G~----ir~iGvs~~~~~~l~~~~~~--- 175 (344)
.+.+ ..|...|++.+- +.+|..++ ...+++++++++.+++.|. |..+.+.+.+.+++.++.+.
T Consensus 108 ~~~~-~~L~~agl~~i~-ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~ 185 (331)
T PRK00164 108 ARRA-AALKDAGLDRVN-VSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKD 185 (331)
T ss_pred HHHH-HHHHHcCCCEEE-EEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHh
Confidence 1222 234455655443 44555432 2357889999999999885 33444444555555554443
Q ss_pred CCceeeeccccccccc---------hhhhHHHHHHHhCCcEEe
Q 019200 176 HPITAVQMEWSLWTRD---------IEEEIIPLCRELGIGIVP 209 (344)
Q Consensus 176 ~~~~~~q~~~n~~~~~---------~~~~l~~~~~~~gi~v~a 209 (344)
.++.+.-++|.++... ...++++..++.|+.+..
T Consensus 186 ~gv~v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 228 (331)
T PRK00164 186 RGIQLRFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTLQP 228 (331)
T ss_pred CCCeEEEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCcccc
Confidence 3444444445543321 014677777777665443
No 41
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=68.40 E-value=1e+02 Score=28.72 Aligned_cols=96 Identities=15% Similarity=0.199 Sum_probs=55.6
Q ss_pred HHHhhcCCCceeEEEecc-CCC-CCCHHHHHHHHHHHHHcCcccE-EecCCC---CHHHHHHHhhcCC-ceeeecccccc
Q 019200 116 ASLKRLDVDYIDLYYQHR-VDT-SVPIEETIGEMKKLVEEGKIKY-IGLSEA---SPGTIRRAHAVHP-ITAVQMEWSLW 188 (344)
Q Consensus 116 ~SL~rLg~d~iDl~~lH~-~~~-~~~~~~~~~~L~~l~~~G~ir~-iGvs~~---~~~~l~~~~~~~~-~~~~q~~~n~~ 188 (344)
+.-+.+|.|+||+-+.-. |+. +...++....++...+.=.+=- |..|.. +++.++++++... -..+....|
T Consensus 83 ~q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~~pLInSat-- 160 (319)
T PRK04452 83 KCVEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGSAE-- 160 (319)
T ss_pred HHHHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEECC--
Confidence 344688989988876543 332 2234445555555544333333 665643 7888888877622 111222122
Q ss_pred ccchhhhHHHHHHHhCCcEEecccCC
Q 019200 189 TRDIEEEIIPLCRELGIGIVPYSPLG 214 (344)
Q Consensus 189 ~~~~~~~l~~~~~~~gi~v~a~~pl~ 214 (344)
..--+.+.+.|+++|..|++.+|..
T Consensus 161 -~en~~~i~~lA~~y~~~Vva~s~~D 185 (319)
T PRK04452 161 -EDNYKKIAAAAMAYGHAVIAWSPLD 185 (319)
T ss_pred -HHHHHHHHHHHHHhCCeEEEEcHHH
Confidence 1112579999999999999987553
No 42
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=67.69 E-value=96 Score=28.13 Aligned_cols=65 Identities=14% Similarity=0.014 Sum_probs=39.7
Q ss_pred HHHHHHcCcccEEec-CC-CCHHHHHHHhhc--CCceeeeccccccccchhhhHHHHHHHhCCcEEecccC
Q 019200 147 MKKLVEEGKIKYIGL-SE-ASPGTIRRAHAV--HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPL 213 (344)
Q Consensus 147 L~~l~~~G~ir~iGv-s~-~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~pl 213 (344)
|.+..++|+.- +|+ .. -++. +.+.+.. ..+.++-.+.++++......++..++..|+..+..-|-
T Consensus 9 lk~~L~~G~~~-~G~~~~~~sp~-~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~ 77 (267)
T PRK10128 9 FKEGLRKGEVQ-IGLWLSSTTSY-MAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVE 77 (267)
T ss_pred HHHHHHcCCce-EEEEecCCCcH-HHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCC
Confidence 44555557753 443 23 3444 3344343 34445566888888765567888888889888876653
No 43
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=67.61 E-value=92 Score=27.86 Aligned_cols=156 Identities=14% Similarity=0.161 Sum_probs=93.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEecccCcCCCchHHHH--HHHHhcCCCCCeEEEecccccCCCCcccccCCChHHHHHHHHH
Q 019200 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLL--GKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEA 116 (344)
Q Consensus 39 ~~~~~~~~l~~Al~~Gin~~DtA~~Yg~g~sE~~l--G~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~ 116 (344)
+.++..+.++.+.+.|++.|-.-- |.. .++.+ =+++++.-.+++.|.-... ..++.+...+-++
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKv--g~~-~~~d~~~v~~vr~~~g~~~~l~vDan----------~~~~~~~a~~~~~- 150 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKV--GRD-PARDVAVVAALREAVGDDAELRVDAN----------RGWTPKQAIRALR- 150 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEec--CCC-HHHHHHHHHHHHHhcCCCCEEEEeCC----------CCcCHHHHHHHHH-
Confidence 456677788888899999887532 111 22222 2233332233454443332 1245444433332
Q ss_pred HHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCccc-EEecCCCCHHHHHHHhhcCCceeeecccccccc-chhh
Q 019200 117 SLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTR-DIEE 194 (344)
Q Consensus 117 SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~ 194 (344)
.|+.++ +.++..|-+. +-++.+.+|++.-.+. ..|=+-++.+.+.++++...++++|+..+..-. ....
T Consensus 151 ~l~~~~-----i~~iEeP~~~----~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~ 221 (265)
T cd03315 151 ALEDLG-----LDYVEQPLPA----DDLEGRAALARATDTPIMADESAFTPHDAFRELALGAADAVNIKTAKTGGLTKAQ 221 (265)
T ss_pred HHHhcC-----CCEEECCCCc----ccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCEEEEecccccCHHHHH
Confidence 444444 4445555432 2356677787776555 444455788889998888889999998776532 1126
Q ss_pred hHHHHHHHhCCcEEecccCCccc
Q 019200 195 EIIPLCRELGIGIVPYSPLGRGF 217 (344)
Q Consensus 195 ~l~~~~~~~gi~v~a~~pl~~G~ 217 (344)
.+...|+++|+.++..+.+..++
T Consensus 222 ~~~~~A~~~gi~~~~~~~~~s~i 244 (265)
T cd03315 222 RVLAVAEALGLPVMVGSMIESGL 244 (265)
T ss_pred HHHHHHHHcCCcEEecCccchHH
Confidence 79999999999999876665443
No 44
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=67.43 E-value=17 Score=31.65 Aligned_cols=68 Identities=19% Similarity=0.255 Sum_probs=46.2
Q ss_pred HHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecC-CCCHHHHHHHhhcCCceeeecccc
Q 019200 117 SLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPGTIRRAHAVHPITAVQMEWS 186 (344)
Q Consensus 117 SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~n 186 (344)
-+..+|.|++=+++........+.+.. ..+.... .+.+..+||. +-+++.+.++++...++++|++-+
T Consensus 18 ~~~~~Gad~iGfI~~~~S~R~V~~~~a-~~i~~~~-~~~i~~VgVf~~~~~~~i~~~~~~~~~d~vQLHg~ 86 (210)
T PRK01222 18 AAAELGADAIGFVFYPKSPRYVSPEQA-AELAAAL-PPFVKVVGVFVNASDEEIDEIVETVPLDLLQLHGD 86 (210)
T ss_pred HHHHcCCCEEEEccCCCCCCcCCHHHH-HHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 344689999998754443344444433 3333322 3568899997 568889999998889999999654
No 45
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=66.59 E-value=1e+02 Score=28.06 Aligned_cols=151 Identities=13% Similarity=0.115 Sum_probs=91.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEec---cc-------CcCCCchHHHHHHHHhcCCCC-CeEEEecccccCCCCcccccCCCh
Q 019200 39 SEEDGISMIKHAFSKGITFFDT---AD-------VYGQNANEVLLGKALKQLPRE-KIQVATKFGIAGIGVAGVIVKGAP 107 (344)
Q Consensus 39 ~~~~~~~~l~~Al~~Gin~~Dt---A~-------~Yg~g~sE~~lG~~l~~~~R~-~~~I~tK~~~~~~~~~~~~~~~~~ 107 (344)
+.++..+..+.+.+.|+..||. ++ .|+ .+.+.+-+.++..++. ++-|..|+++..
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~--~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~------------ 165 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFG--TDPEAVAEIVKAVKKATDVPVIVKLTPNV------------ 165 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCccccc--CCHHHHHHHHHHHHhccCCCEEEEeCCCc------------
Confidence 5677888888888999999986 22 233 2566666666653322 677888985321
Q ss_pred HHHHHHHHHHHhhcCCCceeEEE------eccCCCC-------------CCHHHHHHHHHHHHHcCcccEEecCCC-CHH
Q 019200 108 DYVRSCCEASLKRLDVDYIDLYY------QHRVDTS-------------VPIEETIGEMKKLVEEGKIKYIGLSEA-SPG 167 (344)
Q Consensus 108 ~~i~~~v~~SL~rLg~d~iDl~~------lH~~~~~-------------~~~~~~~~~L~~l~~~G~ir~iGvs~~-~~~ 167 (344)
+.+. .+-+.++..|.|.|++.- +|.-... ....-.++.+.++++.=.+--||+... +++
T Consensus 166 ~~~~-~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~ 244 (296)
T cd04740 166 TDIV-EIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGE 244 (296)
T ss_pred hhHH-HHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHH
Confidence 1222 223457788887776641 1110000 001124677777777656888998885 788
Q ss_pred HHHHHhhcCCceeeeccccccc-cc----hhhhHHHHHHHhCC
Q 019200 168 TIRRAHAVHPITAVQMEWSLWT-RD----IEEEIIPLCRELGI 205 (344)
Q Consensus 168 ~l~~~~~~~~~~~~q~~~n~~~-~~----~~~~l~~~~~~~gi 205 (344)
.+.+++... .+.+|+-=-++. +. ..+++.++.+++|.
T Consensus 245 da~~~l~~G-Ad~V~igra~l~~p~~~~~i~~~l~~~~~~~g~ 286 (296)
T cd04740 245 DALEFLMAG-ASAVQVGTANFVDPEAFKEIIEGLEAYLDEEGI 286 (296)
T ss_pred HHHHHHHcC-CCEEEEchhhhcChHHHHHHHHHHHHHHHHcCC
Confidence 888888765 577887433222 11 22556677777664
No 46
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=66.18 E-value=1e+02 Score=30.47 Aligned_cols=171 Identities=15% Similarity=0.167 Sum_probs=95.3
Q ss_pred CCHHHHHHHHHHHHH-cCCCEEecccCcCCC---chHHHHHHH--Hhc-CCCCCeEEEecccccCC-----------CCc
Q 019200 38 VSEEDGISMIKHAFS-KGITFFDTADVYGQN---ANEVLLGKA--LKQ-LPREKIQVATKFGIAGI-----------GVA 99 (344)
Q Consensus 38 ~~~~~~~~~l~~Al~-~Gin~~DtA~~Yg~g---~sE~~lG~~--l~~-~~R~~~~I~tK~~~~~~-----------~~~ 99 (344)
.+.++..++++.+++ .+++.=|.+..+... .-|.+.-.| +++ .--+.+++.+=+..... ...
T Consensus 28 ~~~~~v~~il~Kal~~~~Ls~eEal~LL~~~~~~~le~L~~~A~~ir~~~~Gn~I~lfapLyiSN~C~n~C~YCgfs~~n 107 (469)
T PRK09613 28 PDKDEIREILEKAKEKKGLSPEEAAVLLNVEDPELLEEIFEAAREIKEKIYGNRIVLFAPLYISNYCVNNCVYCGFRRSN 107 (469)
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHcCCChhHHHHHHHHHHHHHHHHcCCEEEEEEeccccCCCCCCCccCCCccCC
Confidence 366778888888886 366665655544321 122233222 222 11233333332211100 000
Q ss_pred c--cccCCChHHHHHHHHHHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHH----cCcccEEecC--CCCHHHHHH
Q 019200 100 G--VIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVE----EGKIKYIGLS--EASPGTIRR 171 (344)
Q Consensus 100 ~--~~~~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~----~G~ir~iGvs--~~~~~~l~~ 171 (344)
+ .....+.+.|.+.++. +..+|...+-|+.=..| +..+++.+.+.++.+++ .|.++.++|+ ..+.+.+++
T Consensus 108 ~~i~r~~Ls~EEI~~ea~~-~~~~G~~~i~LvsGe~p-~~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~eey~~ 185 (469)
T PRK09613 108 KEIKRKKLTQEEIREEVKA-LEDMGHKRLALVAGEDP-PNCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVENYKK 185 (469)
T ss_pred CCCCceECCHHHHHHHHHH-HHHCCCCEEEEEeCCCC-CCCCHHHHHHHHHHHHHhccccCcceeeEEEeecCCHHHHHH
Confidence 1 1235789999999985 57899887766522222 34567777777777775 5677777765 456778888
Q ss_pred HhhcC--Cceeeeccccc-----ccc-----chh--hhHHHHHHHhCCcEEec
Q 019200 172 AHAVH--PITAVQMEWSL-----WTR-----DIE--EEIIPLCRELGIGIVPY 210 (344)
Q Consensus 172 ~~~~~--~~~~~q~~~n~-----~~~-----~~~--~~l~~~~~~~gi~v~a~ 210 (344)
+.+.+ .+.+.|-.||. +++ ..+ .+.++.+++.||.-+..
T Consensus 186 LkeaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~ 238 (469)
T PRK09613 186 LKEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGI 238 (469)
T ss_pred HHHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCe
Confidence 77753 33444555442 111 111 46788888999874444
No 47
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=65.77 E-value=1.2e+02 Score=28.32 Aligned_cols=109 Identities=16% Similarity=0.082 Sum_probs=60.3
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEeccCCCCC-CHHHHHHHHHHHHHcCcccEEecCC---------CCHHHHHHHhhc
Q 019200 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDTSV-PIEETIGEMKKLVEEGKIKYIGLSE---------ASPGTIRRAHAV 175 (344)
Q Consensus 106 ~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~-~~~~~~~~L~~l~~~G~ir~iGvs~---------~~~~~l~~~~~~ 175 (344)
+.+.+.+.++...+..+ |.-+.|-.=|+.. +...+.+.++.+++-|.|+.+.+.+ .+.+.++.+.+.
T Consensus 120 ~~~e~~~~i~~i~~~~~---I~~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~ 196 (321)
T TIGR03822 120 SPAELDAAFAYIADHPE---IWEVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTS 196 (321)
T ss_pred CHHHHHHHHHHHHhCCC---ccEEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHc
Confidence 44555555554333333 3334454444443 3456778888888888776455533 234445545444
Q ss_pred CCceeeeccccccc--cchhhhHHHHHHHhCCcEEecccCCccc
Q 019200 176 HPITAVQMEWSLWT--RDIEEEIIPLCRELGIGIVPYSPLGRGF 217 (344)
Q Consensus 176 ~~~~~~q~~~n~~~--~~~~~~l~~~~~~~gi~v~a~~pl~~G~ 217 (344)
.....+-+..|-.. .......++.+++.||.+...+++..|.
T Consensus 197 g~~v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gv 240 (321)
T TIGR03822 197 GKTVYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRGV 240 (321)
T ss_pred CCcEEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCC
Confidence 42223333333111 0111457788889999999999998775
No 48
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=64.81 E-value=54 Score=28.64 Aligned_cols=87 Identities=11% Similarity=0.034 Sum_probs=60.0
Q ss_pred eeEEEeccCCCCCCHHHHHHHHHHHHHcCccc-EEecCCCCHHHHHHHhhcCCceeeeccccccccc-hhhhHHHHHHHh
Q 019200 126 IDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRD-IEEEIIPLCREL 203 (344)
Q Consensus 126 iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~l~~~~~~~ 203 (344)
.++.++-.|-+.. -++.+.+|.+...+. ..+=|-++.+.+.++++...++++|+..+.+-.- .-..+..+|+++
T Consensus 120 ~~i~~iEeP~~~~----d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~~d~~~~k~~~~GGi~~~~~i~~~a~~~ 195 (229)
T cd00308 120 YGLAWIEEPCAPD----DLEGYAALRRRTGIPIAADESVTTVDDALEALELGAVDILQIKPTRVGGLTESRRAADLAEAF 195 (229)
T ss_pred cCCCeEECCCCcc----CHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHc
Confidence 4566666654433 355677788777665 3344556778887788878889999987765321 125789999999
Q ss_pred CCcEEecccCCcc
Q 019200 204 GIGIVPYSPLGRG 216 (344)
Q Consensus 204 gi~v~a~~pl~~G 216 (344)
|+.++..+.+..+
T Consensus 196 gi~~~~~~~~~s~ 208 (229)
T cd00308 196 GIRVMVHGTLESS 208 (229)
T ss_pred CCEEeecCCCCCH
Confidence 9999998776544
No 49
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=64.57 E-value=47 Score=28.91 Aligned_cols=84 Identities=18% Similarity=0.231 Sum_probs=55.0
Q ss_pred HHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCc-ccEEecC-CCCHHHHHHHhhcCCceeeeccccccccchhh
Q 019200 117 SLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLS-EASPGTIRRAHAVHPITAVQMEWSLWTRDIEE 194 (344)
Q Consensus 117 SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~-ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~ 194 (344)
....+|.||+=+++.-......+.++ ..++.+.-. ++.+||. |.+.+.+.++.+...++.+|++-.. ..
T Consensus 17 ~a~~~gad~iG~If~~~SpR~Vs~~~----a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~~ld~VQlHG~e-----~~ 87 (208)
T COG0135 17 AAAKAGADYIGFIFVPKSPRYVSPEQ----AREIASAVPKVKVVGVFVNESIEEILEIAEELGLDAVQLHGDE-----DP 87 (208)
T ss_pred HHHHcCCCEEEEEEcCCCCCcCCHHH----HHHHHHhCCCCCEEEEECCCCHHHHHHHHHhcCCCEEEECCCC-----CH
Confidence 34568999988777664444444443 333333333 8899997 5577889999999999999996553 23
Q ss_pred hHHHHHHHhC-CcEEe
Q 019200 195 EIIPLCRELG-IGIVP 209 (344)
Q Consensus 195 ~l~~~~~~~g-i~v~a 209 (344)
+.++..++.. +.|+-
T Consensus 88 ~~~~~l~~~~~~~v~k 103 (208)
T COG0135 88 EYIDQLKEELGVPVIK 103 (208)
T ss_pred HHHHHHHhhcCCceEE
Confidence 4556556543 55553
No 50
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=64.46 E-value=44 Score=32.17 Aligned_cols=60 Identities=13% Similarity=0.030 Sum_probs=37.4
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEEeccCCCC-------------CCHH---HHH-HHHHHHHHcCcccEEecCCCCH
Q 019200 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS-------------VPIE---ETI-GEMKKLVEEGKIKYIGLSEASP 166 (344)
Q Consensus 105 ~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~-------------~~~~---~~~-~~L~~l~~~G~ir~iGvs~~~~ 166 (344)
-+.+.+++.++..+ +|+.++|.+|.+.--... .+.+ +.+ .+.+.|.+.|.. ++++|||..
T Consensus 179 qt~e~~~~tl~~~~-~l~p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~Gy~-~yeisnfa~ 255 (400)
T PRK07379 179 QTLEDWQASLEAAI-ALNPTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQAGYE-HYEISNYAK 255 (400)
T ss_pred CCHHHHHHHHHHHH-cCCCCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCc-eeeeeheEC
Confidence 57788888887555 488999999877632110 0111 122 355667777864 578888753
No 51
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=64.28 E-value=48 Score=31.53 Aligned_cols=61 Identities=18% Similarity=0.118 Sum_probs=38.7
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEecc-CCC-----------CCCH-H---HHH-HHHHHHHHcCcccEEecCCCCH
Q 019200 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHR-VDT-----------SVPI-E---ETI-GEMKKLVEEGKIKYIGLSEASP 166 (344)
Q Consensus 104 ~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~-~~~-----------~~~~-~---~~~-~~L~~l~~~G~ir~iGvs~~~~ 166 (344)
.-+.+.+++.++..+ .|+.++|.+|.+.- |.. ..+. + +.+ .+.+.|.+.|. .++++|||..
T Consensus 166 gqt~~~~~~~l~~~~-~l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yeis~fa~ 243 (370)
T PRK06294 166 TQSLSDFIVDLHQAI-TLPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGF-TRYELASYAK 243 (370)
T ss_pred CCCHHHHHHHHHHHH-ccCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCC-CeeeeeeeeC
Confidence 357888998888766 48999999998863 211 0011 1 222 34555667776 4578888754
No 52
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=63.43 E-value=95 Score=28.03 Aligned_cols=107 Identities=13% Similarity=0.176 Sum_probs=0.0
Q ss_pred cccCCChHHHHHHHHHHHhhcCCCceeEEEeccCCCCCCH------HHHHHHHHHHHHcCcccEEecCCCC---HHHHHH
Q 019200 101 VIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPI------EETIGEMKKLVEEGKIKYIGLSEAS---PGTIRR 171 (344)
Q Consensus 101 ~~~~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~~~------~~~~~~L~~l~~~G~ir~iGvs~~~---~~~l~~ 171 (344)
....++.+.+.+-++. |.++|+++|++-+.......... .+.++.+..+.+ +..+..+++... .+.+..
T Consensus 13 ~~~~f~~~~~~~ia~~-L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~ 90 (266)
T cd07944 13 NNWDFGDEFVKAIYRA-LAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDIDLLEP 90 (266)
T ss_pred cCccCCHHHHHHHHHH-HHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc-cCCEEEEEECCCCCCHHHHHH
Q ss_pred HhhcCCceeeeccccccccchhhhHHHHHHHhCCcEEec
Q 019200 172 AHAVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPY 210 (344)
Q Consensus 172 ~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~ 210 (344)
+.+ ..++.+.+.+..-.-..-.+.+++++++|+.|...
T Consensus 91 a~~-~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~ 128 (266)
T cd07944 91 ASG-SVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFN 128 (266)
T ss_pred Hhc-CCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEE
No 53
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=63.43 E-value=53 Score=29.30 Aligned_cols=111 Identities=22% Similarity=0.221 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEecccCcCC----------------C--chHHHHHHHHhcCCCCCeEEEecccccCCCCc
Q 019200 38 VSEEDGISMIKHAFSKGITFFDTADVYGQ----------------N--ANEVLLGKALKQLPREKIQVATKFGIAGIGVA 99 (344)
Q Consensus 38 ~~~~~~~~~l~~Al~~Gin~~DtA~~Yg~----------------g--~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~ 99 (344)
.+.++-.++.+++-+.||.||=|.-.-.. + -+-.+|-. ++ ....-++|+|-.
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~-~A-~tgkPvIlSTG~-------- 122 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEY-IA-KTGKPVILSTGM-------- 122 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHH-HH-TT-S-EEEE-TT--------
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHH-HH-HhCCcEEEECCC--------
Confidence 57889999999999999999987642220 0 01111111 11 123446666654
Q ss_pred ccccCCChHHHHHHHHHHHhhcCCCceeEEEeccCCCC-CCHH-HHHHHHHHHHHcCcccEEecCCCCHH
Q 019200 100 GVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS-VPIE-ETIGEMKKLVEEGKIKYIGLSEASPG 167 (344)
Q Consensus 100 ~~~~~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~-~~~~-~~~~~L~~l~~~G~ir~iGvs~~~~~ 167 (344)
.+.+.|+++++...++-+ -++.++|+.... .+.+ --+..+..|++.=- --||.|.|+..
T Consensus 123 -----stl~EI~~Av~~~~~~~~---~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~g 183 (241)
T PF03102_consen 123 -----STLEEIERAVEVLREAGN---EDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG-VPVGYSDHTDG 183 (241)
T ss_dssp -------HHHHHHHHHHHHHHCT-----EEEEEE-SSSS--GGG--TTHHHHHHHHST-SEEEEEE-SSS
T ss_pred -----CCHHHHHHHHHHHHhcCC---CCEEEEecCCCCCCChHHcChHHHHHHHHhcC-CCEEeCCCCCC
Confidence 467788888876644444 589999997532 2333 33666777775433 57799998764
No 54
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=63.28 E-value=60 Score=28.46 Aligned_cols=162 Identities=15% Similarity=0.205 Sum_probs=86.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEecccCcCCCchHHHHHHHHhcCCCCCeEEEecccccCCCCcccccCCChHHHHHHHHHH
Q 019200 38 VSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEAS 117 (344)
Q Consensus 38 ~~~~~~~~~l~~Al~~Gin~~DtA~~Yg~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~S 117 (344)
.+.++..++++...+.||..|+++...-.-...+.+.+..+..+. ..+.+-+. ...+.++..++..
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~------------~~~~~i~~~~~~~ 76 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREALPN--ARLQALCR------------ANEEDIERAVEAA 76 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHHHS--SEEEEEEE------------SCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhhcc--cccceeee------------ehHHHHHHHHHhh
Confidence 477889999999999999999998222211123334444332222 22222221 3455676666643
Q ss_pred HhhcCCCceeEEEeccCC-----CCC----CHHHHHHHHHHHHHcCcccEEecCC---CCHHHHHHHhhc---CCceeee
Q 019200 118 LKRLDVDYIDLYYQHRVD-----TSV----PIEETIGEMKKLVEEGKIKYIGLSE---ASPGTIRRAHAV---HPITAVQ 182 (344)
Q Consensus 118 L~rLg~d~iDl~~lH~~~-----~~~----~~~~~~~~L~~l~~~G~ir~iGvs~---~~~~~l~~~~~~---~~~~~~q 182 (344)
...|.+.+.++.=-++. ... .++.+.+.++..++.|.-..+++.. ++++.+.++.+. ..++.+.
T Consensus 77 -~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~ 155 (237)
T PF00682_consen 77 -KEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIY 155 (237)
T ss_dssp -HHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEE
T ss_pred -HhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEE
Confidence 46777777655322210 011 1345566677777888888888754 355555444333 2344444
Q ss_pred c--cccccccchhhhHHHHHHHh----CCcEEecccCC
Q 019200 183 M--EWSLWTRDIEEEIIPLCREL----GIGIVPYSPLG 214 (344)
Q Consensus 183 ~--~~n~~~~~~~~~l~~~~~~~----gi~v~a~~pl~ 214 (344)
+ .+..+.+..-.+++...+++ .+++.++.-++
T Consensus 156 l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~G 193 (237)
T PF00682_consen 156 LADTVGIMTPEDVAELVRALREALPDIPLGFHAHNDLG 193 (237)
T ss_dssp EEETTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS
T ss_pred eeCccCCcCHHHHHHHHHHHHHhccCCeEEEEecCCcc
Confidence 4 34444444335666666653 35555555554
No 55
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=62.71 E-value=1.4e+02 Score=28.19 Aligned_cols=136 Identities=13% Similarity=0.076 Sum_probs=80.5
Q ss_pred CCCCeEEEecccccCCC------CcccccCCChHHHHHHHHHHHhhcCCCceeEEEe-ccCCCCCCHHHHHHHHHHHHHc
Q 019200 81 PREKIQVATKFGIAGIG------VAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQ-HRVDTSVPIEETIGEMKKLVEE 153 (344)
Q Consensus 81 ~R~~~~I~tK~~~~~~~------~~~~~~~~~~~~i~~~v~~SL~rLg~d~iDl~~l-H~~~~~~~~~~~~~~L~~l~~~ 153 (344)
.|-.++|+|.+|....- ..+...+.+++.|..++....+.++. .++-+.+ .-=++....+.+.+++..+++.
T Consensus 99 ~r~t~cvSsqvGC~~~C~FC~tg~~g~~rnlt~~EIv~qv~~~~~~~~~-~~~~IvfmGmGEPlln~~~v~~~i~~l~~~ 177 (345)
T PRK14457 99 KRLTVCVSSQVGCPMACDFCATGKGGLKRSLKAHEIVDQVLTVQEDMQR-RVSHVVFMGMGEPLLNIDEVLAAIRCLNQD 177 (345)
T ss_pred CCCEEEEeCCCCCCCcCCcCCCCCCCCccccCHHHHHHHHHHHHHHhcC-CCCEEEEEecCccccCHHHHHHHHHHHhcc
Confidence 36678888887764431 11233468999999999988877753 3564444 3345666678899999999875
Q ss_pred -Cc-ccEEecCCC-CHHHHHHHhhcC------Cceeeeccccccccchh----------------hhHHHHHHHhCCcEE
Q 019200 154 -GK-IKYIGLSEA-SPGTIRRAHAVH------PITAVQMEWSLWTRDIE----------------EEIIPLCRELGIGIV 208 (344)
Q Consensus 154 -G~-ir~iGvs~~-~~~~l~~~~~~~------~~~~~q~~~n~~~~~~~----------------~~l~~~~~~~gi~v~ 208 (344)
|. .|.|=+|+. -+..++++.+.. ....+.+..|..+.... ..+.++..+.|-.|.
T Consensus 178 ~~i~~r~itvST~G~~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr~I~ 257 (345)
T PRK14457 178 LGIGQRRITVSTVGVPKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAITGRRVS 257 (345)
T ss_pred cCCccCceEEECCCchhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCEEE
Confidence 43 356666654 334566665433 11234454444433211 234455556677777
Q ss_pred ecccCCccc
Q 019200 209 PYSPLGRGF 217 (344)
Q Consensus 209 a~~pl~~G~ 217 (344)
..-||-.|+
T Consensus 258 iey~LIpGv 266 (345)
T PRK14457 258 FEYILLGGV 266 (345)
T ss_pred EEEEEECCc
Confidence 766766554
No 56
>PRK05660 HemN family oxidoreductase; Provisional
Probab=61.91 E-value=57 Score=31.13 Aligned_cols=61 Identities=10% Similarity=0.023 Sum_probs=37.6
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEecc-CCC-------CC-CHHHHHH----HHHHHHHcCcccEEecCCCCH
Q 019200 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHR-VDT-------SV-PIEETIG----EMKKLVEEGKIKYIGLSEASP 166 (344)
Q Consensus 104 ~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~-~~~-------~~-~~~~~~~----~L~~l~~~G~ir~iGvs~~~~ 166 (344)
.-+.+.+.+.++..++ |+.++|.+|.+-- |.. .. ..++.++ +.+.|.+.|. ..+++|||..
T Consensus 170 gqt~~~~~~~l~~~~~-l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yei~~fa~ 243 (378)
T PRK05660 170 DQSLEEALDDLRQAIA-LNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGY-QQYETSAYAK 243 (378)
T ss_pred CCCHHHHHHHHHHHHh-cCCCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHHcCC-cEeecccccC
Confidence 3578888888886554 9999999987742 221 01 1122232 3445666776 4578888754
No 57
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=61.64 E-value=1.2e+02 Score=27.24 Aligned_cols=105 Identities=16% Similarity=0.176 Sum_probs=60.4
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEeccCCC-----CCCHHHHHHHHHHHHHc-CcccEEecC---CCCHHHHHHHhh
Q 019200 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDT-----SVPIEETIGEMKKLVEE-GKIKYIGLS---EASPGTIRRAHA 174 (344)
Q Consensus 104 ~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~-----~~~~~~~~~~L~~l~~~-G~ir~iGvs---~~~~~~l~~~~~ 174 (344)
.++.+...+-++ .|.++|+++|.+-+...... .-+....++.++.+++. +..+...++ ......++.+.+
T Consensus 18 ~~~~~~k~~i~~-~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~ 96 (263)
T cd07943 18 QFTLEQVRAIAR-ALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAAD 96 (263)
T ss_pred ecCHHHHHHHHH-HHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHHH
Confidence 466666665555 59999999999985532110 00112245566666443 346666554 224566666666
Q ss_pred cCCceeeeccccccccchhhhHHHHHHHhCCcEEec
Q 019200 175 VHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPY 210 (344)
Q Consensus 175 ~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~ 210 (344)
. .++.+.+.+..-+-..-.+.+++++++|+.+...
T Consensus 97 ~-g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 97 L-GVDVVRVATHCTEADVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred c-CCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEE
Confidence 4 4455555443322222357889999999877654
No 58
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=61.36 E-value=70 Score=30.70 Aligned_cols=144 Identities=17% Similarity=0.172 Sum_probs=85.6
Q ss_pred CHHHHHHHHHHHHHcCCCE-EecccCcCCCchHHHHHHH-HhcCCCCCeEEEecccccCCC--CcccccCCChHHHHHHH
Q 019200 39 SEEDGISMIKHAFSKGITF-FDTADVYGQNANEVLLGKA-LKQLPREKIQVATKFGIAGIG--VAGVIVKGAPDYVRSCC 114 (344)
Q Consensus 39 ~~~~~~~~l~~Al~~Gin~-~DtA~~Yg~g~sE~~lG~~-l~~~~R~~~~I~tK~~~~~~~--~~~~~~~~~~~~i~~~v 114 (344)
+.+.-.+=++.|++.|-.. .|-+ ..|+ -..+.+. |+. ..+-|-| +..+... ..+...+.+.+.+.+.+
T Consensus 75 d~~~E~~K~~~A~~~GADtiMDLS-tGgd---l~~iR~~il~~---s~vpvGT-VPiYqa~~~~~~~~~~mt~d~~~~~i 146 (423)
T TIGR00190 75 DIEEEVEKALIAIKYGADTVMDLS-TGGD---LDEIRKAILDA---VPVPVGT-VPIYQAAEKVHGAVEDMDEDDMFRAI 146 (423)
T ss_pred CHHHHHHHHHHHHHcCCCeEeecc-CCCC---HHHHHHHHHHc---CCCCccC-ccHHHHHHHhcCChhhCCHHHHHHHH
Confidence 4555566689999999764 4443 2332 3333333 322 1222222 1111100 00123568888998888
Q ss_pred HHHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhcCCceeeeccccccccchhh
Q 019200 115 EASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDIEE 194 (344)
Q Consensus 115 ~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~ 194 (344)
++..+ +-+|.+-+|.- -+.+.++.++++|+ ..|+-+-...-+..+.... -.-|++.... .
T Consensus 147 e~qa~----dGVDfmTiH~G-------i~~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~~------~~ENPlye~f-D 206 (423)
T TIGR00190 147 EKQAK----DGVDFMTIHAG-------VLLEYVERLKRSGR--ITGIVSRGGAILAAWMLHH------HKENPLYKNF-D 206 (423)
T ss_pred HHHHH----hCCCEEEEccc-------hhHHHHHHHHhCCC--ccCeecCcHHHHHHHHHHc------CCcCchHHHH-H
Confidence 87776 44788999984 25678889999885 6677666666555543322 2345666655 4
Q ss_pred hHHHHHHHhCCcEEec
Q 019200 195 EIIPLCRELGIGIVPY 210 (344)
Q Consensus 195 ~l~~~~~~~gi~v~a~ 210 (344)
.+++.|+++++.+-.-
T Consensus 207 ~lLeI~~~yDVtlSLG 222 (423)
T TIGR00190 207 YILEIAKEYDVTLSLG 222 (423)
T ss_pred HHHHHHHHhCeeeecc
Confidence 7999999999988443
No 59
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=61.08 E-value=1.2e+02 Score=27.06 Aligned_cols=65 Identities=11% Similarity=-0.034 Sum_probs=39.3
Q ss_pred HHHHHcCcccEEec-CC-CCHHHHHHHhhc--CCceeeeccccccccchhhhHHHHHHHhCCcEEecccCC
Q 019200 148 KKLVEEGKIKYIGL-SE-ASPGTIRRAHAV--HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLG 214 (344)
Q Consensus 148 ~~l~~~G~ir~iGv-s~-~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~pl~ 214 (344)
.+-.++|+. .+|+ .+ -++. +.+.+.. ..+.++-.+..+++...-..++..++..|+..+.+-|-.
T Consensus 4 k~~l~~g~~-~~G~~~~~~sp~-~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~ 72 (249)
T TIGR03239 4 RQDLLARET-LIGCWSALGNPI-TTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWN 72 (249)
T ss_pred HHHHHcCCc-eEEEEEcCCCcH-HHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCC
Confidence 333445764 3443 23 3444 4444444 444556668888877655678888888898888876553
No 60
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=59.79 E-value=1.5e+02 Score=27.56 Aligned_cols=154 Identities=14% Similarity=0.053 Sum_probs=91.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEecccCcCCCchHHHHHHHHhcCCCCCeEEEecccccCCCCcccccCCChHHHHHHHHHHH
Q 019200 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASL 118 (344)
Q Consensus 39 ~~~~~~~~l~~Al~~Gin~~DtA~~Yg~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~SL 118 (344)
+.++..+.+..+.+.|++.|=.-- +. ..+.-.=+++++.- .++-|.- ... ..++.+..+ .+ +.|
T Consensus 132 ~~~~~~~~a~~~~~~Gf~~~KiKv--~~-~~d~~~v~~vr~~~-~~~~l~v----DaN------~~~~~~~a~-~~-~~l 195 (324)
T TIGR01928 132 NDEQMLKQIESLKATGYKRIKLKI--TP-QIMHQLVKLRRLRF-PQIPLVI----DAN------ESYDLQDFP-RL-KEL 195 (324)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEe--CC-chhHHHHHHHHHhC-CCCcEEE----ECC------CCCCHHHHH-HH-HHH
Confidence 456677777888899999874211 11 12222223333311 1222221 111 124555432 12 334
Q ss_pred hhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCccc-EEecCCCCHHHHHHHhhcCCceeeeccccccccc-hhhhH
Q 019200 119 KRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRD-IEEEI 196 (344)
Q Consensus 119 ~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~l 196 (344)
+.+ ++.++-.|-. .+.++.+.+|+++-.+. ..|=|.++...+..+++...++++|+....+-.- .-..+
T Consensus 196 ~~~-----~~~~iEeP~~----~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~~~~ 266 (324)
T TIGR01928 196 DRY-----QLLYIEEPFK----IDDLSMLDELAKGTITPICLDESITSLDDARNLIELGNVKVINIKPGRLGGLTEVQKA 266 (324)
T ss_pred hhC-----CCcEEECCCC----hhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCCEEEeCcchhcCHHHHHHH
Confidence 433 5555555532 23457788888876555 5666778999999999988889999877654321 12679
Q ss_pred HHHHHHhCCcEEecccCCccc
Q 019200 197 IPLCRELGIGIVPYSPLGRGF 217 (344)
Q Consensus 197 ~~~~~~~gi~v~a~~pl~~G~ 217 (344)
...|+.+|+.++..+.+..|+
T Consensus 267 ~~~A~~~gi~~~~~~~~es~i 287 (324)
T TIGR01928 267 IETCREHGAKVWIGGMLETGI 287 (324)
T ss_pred HHHHHHcCCeEEEcceEcccH
Confidence 999999999999876565443
No 61
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=58.99 E-value=30 Score=31.67 Aligned_cols=103 Identities=13% Similarity=0.059 Sum_probs=60.9
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhcCCceeeec
Q 019200 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAVQM 183 (344)
Q Consensus 104 ~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~ 183 (344)
.++.+...+ +-+.|.++|+++|.+-.++.|.......+.++.+..+.+...++...+. .+...++.+.+... +.+.+
T Consensus 22 ~~s~e~k~~-ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~g~-~~v~i 98 (287)
T PRK05692 22 FIPTADKIA-LIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAAGA-DEVAV 98 (287)
T ss_pred CcCHHHHHH-HHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHcCC-CEEEE
Confidence 355555544 4456999999999998666554222222345666666554446666655 46777888777532 33333
Q ss_pred ccccc--------ccch------hhhHHHHHHHhCCcEEe
Q 019200 184 EWSLW--------TRDI------EEEIIPLCRELGIGIVP 209 (344)
Q Consensus 184 ~~n~~--------~~~~------~~~l~~~~~~~gi~v~a 209 (344)
..+.- .+.. -...+++++++|+.+.+
T Consensus 99 ~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~ 138 (287)
T PRK05692 99 FASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRG 138 (287)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 22221 1111 14689999999998864
No 62
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=58.85 E-value=53 Score=26.54 Aligned_cols=63 Identities=10% Similarity=0.175 Sum_probs=45.3
Q ss_pred CCCCeEEEecccccCCCCcccccCCChHHHHHHHHHHHhhcC--CCceeEEEeccCCCCCCHHHHHHHHHHHHHc
Q 019200 81 PREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLD--VDYIDLYYQHRVDTSVPIEETIGEMKKLVEE 153 (344)
Q Consensus 81 ~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~SL~rLg--~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~ 153 (344)
.|=-+.|+-|+|. -..++.|++.+.++++.+. ....|++++.......++.++...|..+.++
T Consensus 46 ~RlG~sVSKKvg~----------AV~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~~~f~~L~~~l~~~~~~ 110 (138)
T PRK00730 46 CKVGITVSKKFGK----------AHQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQPDFLKLLQDFLQQIPE 110 (138)
T ss_pred ceEEEEEeccccc----------chhHHHHHHHHHHHHHHhhcccCCceEEEEeccccCCCHHHHHHHHHHHHHH
Confidence 3555677777653 2567788888888887763 3568999999988767777777777766653
No 63
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=58.03 E-value=1.4e+02 Score=26.74 Aligned_cols=104 Identities=13% Similarity=-0.004 Sum_probs=61.9
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhc--CCceee
Q 019200 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV--HPITAV 181 (344)
Q Consensus 104 ~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~--~~~~~~ 181 (344)
..+++.+.+..++.++ -|.|+||+-. .|......++.-..+..+++.-. .-|.+-+++++.++++++. +.. +
T Consensus 22 ~~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~~~~~~ee~~r~v~~i~~~~~-~piSIDT~~~~v~e~aL~~~~G~~--i 95 (252)
T cd00740 22 AEDYDEALDVARQQVE-GGAQILDLNV--DYGGLDGVSAMKWLLNLLATEPT-VPLMLDSTNWEVIEAGLKCCQGKC--V 95 (252)
T ss_pred cCCHHHHHHHHHHHHH-CCCCEEEECC--CCCCCCHHHHHHHHHHHHHHhcC-CcEEeeCCcHHHHHHHHhhCCCCc--E
Confidence 4567777777777765 4999999865 23321122233233222332212 2478888999999999886 332 2
Q ss_pred ecccccccc-chhhhHHHHHHHhCCcEEecccC
Q 019200 182 QMEWSLWTR-DIEEEIIPLCRELGIGIVPYSPL 213 (344)
Q Consensus 182 q~~~n~~~~-~~~~~l~~~~~~~gi~v~a~~pl 213 (344)
-...+.... .....+++.++++|..++....-
T Consensus 96 INsIs~~~~~e~~~~~~~~~~~~~~~vV~m~~~ 128 (252)
T cd00740 96 VNSINLEDGEERFLKVARLAKEHGAAVVVLAFD 128 (252)
T ss_pred EEeCCCCCCccccHHHHHHHHHhCCCEEEeccC
Confidence 333333321 11246889999999999987543
No 64
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=57.28 E-value=54 Score=32.13 Aligned_cols=29 Identities=21% Similarity=0.227 Sum_probs=22.8
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEecc
Q 019200 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHR 133 (344)
Q Consensus 104 ~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~ 133 (344)
.-+.+.+++.++..+ .|+.++|++|.+.-
T Consensus 226 gqT~e~~~~~l~~~~-~l~~~~is~y~L~~ 254 (449)
T PRK09058 226 GQTPEIWQQDLAIVR-DLGLDGVDLYALNL 254 (449)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEEecccc
Confidence 357888888888655 48999999998764
No 65
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=56.99 E-value=1.3e+02 Score=28.36 Aligned_cols=60 Identities=15% Similarity=0.083 Sum_probs=38.0
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEEecc-CCCC--------CCHHHHH-HHHHHHHHcCcccEEecCCCCH
Q 019200 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHR-VDTS--------VPIEETI-GEMKKLVEEGKIKYIGLSEASP 166 (344)
Q Consensus 105 ~~~~~i~~~v~~SL~rLg~d~iDl~~lH~-~~~~--------~~~~~~~-~~L~~l~~~G~ir~iGvs~~~~ 166 (344)
-+.+.+++.++..+ +|+.+++.+|.+.- |... .+.++.+ .+.+.|.+.|. ..+++|||..
T Consensus 162 qt~~~~~~~l~~~~-~l~~~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~l~~~Gy-~~yeis~fa~ 231 (350)
T PRK08446 162 DNKKLLKEELKLAK-ELPINHLSAYSLTIEENTPFFEKNHKKKDDENLAKFFIEQLEELGF-KQYEISNFGK 231 (350)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEeccceecCCChhHHhhhcCCCHHHHHHHHHHHHHHCCC-cEEEeehhhC
Confidence 57788888887644 58999999988753 2110 1122333 34566667785 5788888753
No 66
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=56.98 E-value=98 Score=26.94 Aligned_cols=99 Identities=15% Similarity=0.286 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCc------ccEEecCCCC-HHHHHHHhhcCCcee
Q 019200 108 DYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK------IKYIGLSEAS-PGTIRRAHAVHPITA 180 (344)
Q Consensus 108 ~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~------ir~iGvs~~~-~~~l~~~~~~~~~~~ 180 (344)
.+....++..-+--.-..|+-+++...+...+.+|-+...++|.+.|. ..|-|+++.+ .-...+.-....|.+
T Consensus 76 ~yy~~Ri~aA~~ly~~gKV~~LLlSGDN~~~sYnEp~tM~kdL~~~GVp~~~i~lDyAGFrTLDSvvRA~kVF~~~~ftI 155 (235)
T COG2949 76 RYYTYRIDAAIALYKAGKVNYLLLSGDNATVSYNEPRTMRKDLIAAGVPAKNIFLDYAGFRTLDSVVRARKVFGTNDFTI 155 (235)
T ss_pred HhHHHHHHHHHHHHhcCCeeEEEEecCCCcccccchHHHHHHHHHcCCCHHHeeecccCccHHHHHHHHHHHcCcCcEEE
Confidence 445666677777777778999999998888889999999999999997 3466766632 222333333355555
Q ss_pred eeccccccccchhhhHHHHHHHhCCcEEeccc
Q 019200 181 VQMEWSLWTRDIEEEIIPLCRELGIGIVPYSP 212 (344)
Q Consensus 181 ~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~p 212 (344)
+--.|+. +..+=.|+.+||.-+++..
T Consensus 156 ItQ~FHc------eRAlfiA~~~gIdAic~~a 181 (235)
T COG2949 156 ITQRFHC------ERALFIARQMGIDAICFAA 181 (235)
T ss_pred Eeccccc------HHHHHHHHHhCCceEEecC
Confidence 5444554 4567789999999887653
No 67
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=56.16 E-value=1.2e+02 Score=27.03 Aligned_cols=119 Identities=13% Similarity=0.197 Sum_probs=63.8
Q ss_pred HHHHHHHHHhhcCCCceeEEEe--ccCCCCCCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhcCCceeeeccccc
Q 019200 110 VRSCCEASLKRLDVDYIDLYYQ--HRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAVQMEWSL 187 (344)
Q Consensus 110 i~~~v~~SL~rLg~d~iDl~~l--H~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~ 187 (344)
+.++++ .++++|.++|++..- |...+.. ....++.|.++.++--+.-++++... ...++|+
T Consensus 15 l~~~l~-~~~~~G~~~vEl~~~~~~~~~~~~-~~~~~~~l~~~~~~~gl~v~s~~~~~---------------~~~~~~~ 77 (275)
T PRK09856 15 IEHAFR-DASELGYDGIEIWGGRPHAFAPDL-KAGGIKQIKALAQTYQMPIIGYTPET---------------NGYPYNM 77 (275)
T ss_pred HHHHHH-HHHHcCCCEEEEccCCcccccccc-CchHHHHHHHHHHHcCCeEEEecCcc---------------cCcCccc
Confidence 455554 678899999998531 2211111 12345556655544444444443211 0111222
Q ss_pred cccc---------hhhhHHHHHHHhCCcEEecccCCcccCCCCCCCCCCCCCcccccccCccccchhhhHHHHHHHHHHH
Q 019200 188 WTRD---------IEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSFLHFLPRFKGENLDRNKSIYFRIGNLA 258 (344)
Q Consensus 188 ~~~~---------~~~~l~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la 258 (344)
+... .-...+++|+..|...+...|...|... .....++...+.++.+.++|
T Consensus 78 ~~~~~~~r~~~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~-------------------~~~~~~~~~~~~l~~l~~~a 138 (275)
T PRK09856 78 MLGDEHMRRESLDMIKLAMDMAKEMNAGYTLISAAHAGYLT-------------------PPNVIWGRLAENLSELCEYA 138 (275)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCC-------------------CHHHHHHHHHHHHHHHHHHH
Confidence 1111 1146889999999999877665433210 01122455667778888889
Q ss_pred HHcCCC
Q 019200 259 KKYNCT 264 (344)
Q Consensus 259 ~~~~~s 264 (344)
+++|+.
T Consensus 139 ~~~gv~ 144 (275)
T PRK09856 139 ENIGMD 144 (275)
T ss_pred HHcCCE
Confidence 998863
No 68
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=55.92 E-value=1.5e+02 Score=29.40 Aligned_cols=66 Identities=9% Similarity=0.066 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHHHHcCcccE----EecCCCCHHHHHHHhhc---CCceeeeccccccccchhhhHHHHHHHhCC
Q 019200 138 VPIEETIGEMKKLVEEGKIKY----IGLSEASPGTIRRAHAV---HPITAVQMEWSLWTRDIEEEIIPLCRELGI 205 (344)
Q Consensus 138 ~~~~~~~~~L~~l~~~G~ir~----iGvs~~~~~~l~~~~~~---~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi 205 (344)
...++..++++.+++.|.... +|+-+.+.+.+++.++. ..++ ++.++.+.+-+...+.+.+++.+.
T Consensus 320 ~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~~~--~~~~~~~tP~PGT~l~~~~~~~~~ 392 (497)
T TIGR02026 320 TTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDWDPD--QANWLMYTPWPFTSLFGELSDRVE 392 (497)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHcCCC--ceEEEEecCCCCcHHHHHHHhhcc
Confidence 456788899999999987433 45566677766665443 2333 344566666655678888877653
No 69
>PRK05414 urocanate hydratase; Provisional
Probab=55.77 E-value=27 Score=34.40 Aligned_cols=126 Identities=17% Similarity=0.181 Sum_probs=79.3
Q ss_pred HHHHHHHHcCCCEEe--cccCcC--------CCchHHHHHHHHhc---CCCCCeEEEecccccCCCCc---------ccc
Q 019200 45 SMIKHAFSKGITFFD--TADVYG--------QNANEVLLGKALKQ---LPREKIQVATKFGIAGIGVA---------GVI 102 (344)
Q Consensus 45 ~~l~~Al~~Gin~~D--tA~~Yg--------~g~sE~~lG~~l~~---~~R~~~~I~tK~~~~~~~~~---------~~~ 102 (344)
+-+...-+.|+.-+= ||-+|- .|--|.++..+-+. ..+-.+|+++-+|--....+ ...
T Consensus 116 e~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~a~rk~f~g~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~ 195 (556)
T PRK05414 116 EHFNELEAKGLTMYGQMTAGSWIYIGSQGIVQGTYETFAEAARQHFGGDLAGRLVLTAGLGGMGGAQPLAATMAGAVCLA 195 (556)
T ss_pred HHHHHHHHcccccccCccccceeEEcCceeeecHHHHHHHHHHHhcCCCCceeEEEEecCCccccccHHHHHhcCceEEE
Confidence 345555667776553 444332 14455555544443 24567888888764332211 011
Q ss_pred cCCChHHHHHHHHHHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhc---CCce
Q 019200 103 VKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV---HPIT 179 (344)
Q Consensus 103 ~~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~---~~~~ 179 (344)
...++. +.-+|+.+.|+|.+ ..++++.++..++.+++|+...||+-..-++.++++.+. +.+.
T Consensus 196 vEvd~~-------ri~kR~~~gyld~~-------~~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i~pDlv 261 (556)
T PRK05414 196 VEVDES-------RIDKRLRTGYLDEK-------ADDLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRRGIRPDLV 261 (556)
T ss_pred EEECHH-------HHHHHHhCCcceeE-------cCCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHcCCCCCcc
Confidence 223333 34567788999843 457899999999999999999999999888888888776 2333
Q ss_pred eeecc
Q 019200 180 AVQME 184 (344)
Q Consensus 180 ~~q~~ 184 (344)
+-|..
T Consensus 262 tDQTS 266 (556)
T PRK05414 262 TDQTS 266 (556)
T ss_pred CcCcc
Confidence 34654
No 70
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=55.70 E-value=73 Score=30.86 Aligned_cols=86 Identities=13% Similarity=-0.033 Sum_probs=60.1
Q ss_pred eEEEeccCCCCCCHHHHHHHHHHHHHc------CcccEEecCCCCHHHHHHHhhcCCceeeeccccccccch-hhhHHHH
Q 019200 127 DLYYQHRVDTSVPIEETIGEMKKLVEE------GKIKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDI-EEEIIPL 199 (344)
Q Consensus 127 Dl~~lH~~~~~~~~~~~~~~L~~l~~~------G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~-~~~l~~~ 199 (344)
++ ++-.|-+..+.++.++.+.+|+++ ..=-..+=+-++.+.+.++++....+++|+..+-+---. ..++.++
T Consensus 265 ~~-~iEqPv~~~d~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a~d~v~iK~~k~GGIt~a~kia~l 343 (408)
T TIGR01502 265 HL-RIEGPMDVGSRQAQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKAGHMVQIKTPDVGGVNNIARAIMY 343 (408)
T ss_pred Ce-EEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHH
Confidence 44 666665443334557777777765 333344555678899999999888899999877643211 2679999
Q ss_pred HHHhCCcEEecccC
Q 019200 200 CRELGIGIVPYSPL 213 (344)
Q Consensus 200 ~~~~gi~v~a~~pl 213 (344)
|+.+||.++..+..
T Consensus 344 A~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 344 CKANGMGAYVGGTC 357 (408)
T ss_pred HHHcCCEEEEeCCC
Confidence 99999999987654
No 71
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=55.69 E-value=27 Score=34.27 Aligned_cols=127 Identities=19% Similarity=0.196 Sum_probs=79.4
Q ss_pred HHHHHHHHcCCCEEe--cccCcC--------CCchHHHHHHHHhc---CCCCCeEEEecccccCCCCc---------ccc
Q 019200 45 SMIKHAFSKGITFFD--TADVYG--------QNANEVLLGKALKQ---LPREKIQVATKFGIAGIGVA---------GVI 102 (344)
Q Consensus 45 ~~l~~Al~~Gin~~D--tA~~Yg--------~g~sE~~lG~~l~~---~~R~~~~I~tK~~~~~~~~~---------~~~ 102 (344)
+-+...-+.|+.-+= ||-+|- .|--|.++..+-+. ..+-.+|+++-+|--....+ ...
T Consensus 107 e~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~f~~~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~ 186 (545)
T TIGR01228 107 EHFHELEAKGLMMYGQMTAGSWIYIGTQGILQGTYETFAELARQHFGGSLKGKWVLTAGLGGMGGAQPLAVTMNGGVSIA 186 (545)
T ss_pred HHHHHHHHcccccccCccccceEEEcCcceeecHHHHHHHHHHHhcCCCCceeEEEEeCCCccccccHHHHHHcCceEEE
Confidence 345556667776553 444331 14355555444333 23567888888764322111 011
Q ss_pred cCCChHHHHHHHHHHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhc---CCce
Q 019200 103 VKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV---HPIT 179 (344)
Q Consensus 103 ~~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~---~~~~ 179 (344)
.+.++. +.-+|+.+.|+|.+ ..++++.++..++.+++|+...||+-..-++.++++.+. +.+.
T Consensus 187 vEvd~~-------ri~kR~~~gyld~~-------~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r~i~pDlv 252 (545)
T TIGR01228 187 VEVDES-------RIDKRLETKYCDEQ-------TDSLDEALARAEEAKAEGKPISIGLLGNAAEVLPELLKRGVVPDVV 252 (545)
T ss_pred EEECHH-------HHHHHHhcCcceeE-------cCCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHHHcCCCCCCc
Confidence 223333 34567778999843 457899999999999999999999999888888888775 2333
Q ss_pred eeeccc
Q 019200 180 AVQMEW 185 (344)
Q Consensus 180 ~~q~~~ 185 (344)
+-|...
T Consensus 253 tDQTSa 258 (545)
T TIGR01228 253 TDQTSA 258 (545)
T ss_pred CCCCcc
Confidence 446543
No 72
>PRK06361 hypothetical protein; Provisional
Probab=55.61 E-value=1.3e+02 Score=25.73 Aligned_cols=187 Identities=14% Similarity=0.073 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHcCCCEEecccCcCCCchHHHHHHH---HhcC-CCCCeEEEecccccCCCCcccccCCChHHHHHHHHH
Q 019200 41 EDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKA---LKQL-PREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEA 116 (344)
Q Consensus 41 ~~~~~~l~~Al~~Gin~~DtA~~Yg~g~sE~~lG~~---l~~~-~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~ 116 (344)
....+++++|.+.|+..+=.++|.....-...+-.. .++. ...++.| ..|.... ....+.+ ..+..
T Consensus 10 ~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~~~~~~~~~i~v--~~GiE~~-------~~~~~~~-~~~~~ 79 (212)
T PRK06361 10 LIPSELVRRARVLGYRAIAITDHADASNLEEILEKLVRAAEELELYWDIEV--IPGVELT-------HVPPKLI-PKLAK 79 (212)
T ss_pred CCHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHHhhcCCCEE--EEEEEEc-------ccCchhh-chHHH
Confidence 346899999999999999888776531111111111 1111 1113322 2222210 0112223 23335
Q ss_pred HHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecCCC-CHHHHHHHhhcCCceeeeccccccccchhhh
Q 019200 117 SLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA-SPGTIRRAHAVHPITAVQMEWSLWTRDIEEE 195 (344)
Q Consensus 117 SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~ 195 (344)
.+.+++ .|+..+|......+.. ...-..+.+.|.+.-+|=-.. ....++.+.+. .+ .+.+......+.....
T Consensus 80 ~~~~~~---~~~~svH~~~~~~~~~--~~~~~~a~~~~~~dvlaHpd~~~~~~~~~~~~~-~~-~lEin~~~~~~~~~~~ 152 (212)
T PRK06361 80 KARDLG---AEIVVVHGETIVEPVE--EGTNLAAIECEDVDILAHPGLITEEEAELAAEN-GV-FLEITARKGHSLTNGH 152 (212)
T ss_pred HHHHCC---CEEEEECCCCcchhhh--hhhHHHHHhCCCCcEecCcchhhHHHHHHHHHc-Ce-EEEEECCCCcccchHH
Confidence 566665 5777899543322221 111145678888766654432 22223333332 21 1222211112223357
Q ss_pred HHHHHHHhCCcEEecccCCcccCCCCCCCCCCCCCcccccccCccccchhhhHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 019200 196 IIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSFLHFLPRFKGENLDRNKSIYFRIGNLAKKYNCTSAQLALAWV 273 (344)
Q Consensus 196 l~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~qlal~~~ 273 (344)
+++++++.|+.++..+.... .+... ..+.+..++++.|.+..++--.+.
T Consensus 153 ~l~~a~~~gi~vv~~SDaH~----------------------------~~d~~-~~~~~~~i~~~~gl~~~~v~~~~~ 201 (212)
T PRK06361 153 VARIAREAGAPLVINTDTHA----------------------------PSDLI-TYEFARKVALGAGLTEKELEEALE 201 (212)
T ss_pred HHHHHHHhCCcEEEECCCCC----------------------------HHHHH-HHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999877654431 01222 467888899999998888765443
No 73
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=55.09 E-value=2.3e+02 Score=28.29 Aligned_cols=100 Identities=10% Similarity=0.099 Sum_probs=55.7
Q ss_pred hHHHHHHHHhc----CCCCCeEEEecccccCCCCcccccCCChHHHHHHHHHHHhhcCCCceeEEEeccCCCCCC----H
Q 019200 69 NEVLLGKALKQ----LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVP----I 140 (344)
Q Consensus 69 sE~~lG~~l~~----~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~~----~ 140 (344)
+++.+-+++++ .+.+-++|.|-+. .+-|-..++...++++.+.++++.++.+..... .
T Consensus 69 ~~~~L~~aI~~~~~~~~P~~I~V~sTC~--------------selIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~~~g~ 134 (511)
T TIGR01278 69 SQTRLVDTVRRVDDRFKPDLIVVTPSCT--------------SSLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKENQAA 134 (511)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEeCCCh--------------HHHhccCHHHHHHHhccCCCcEEEecCCCcccchhHHH
Confidence 56666666655 3344456666653 233444445555555544588999999875433 1
Q ss_pred HHHHHHHHH-H----------HHcCcccEEecCCC------CHHHHHHHhhcCCceeee
Q 019200 141 EETIGEMKK-L----------VEEGKIKYIGLSEA------SPGTIRRAHAVHPITAVQ 182 (344)
Q Consensus 141 ~~~~~~L~~-l----------~~~G~ir~iGvs~~------~~~~l~~~~~~~~~~~~q 182 (344)
+.+++.+-+ + .+.+.|.-||.++. +...++++++...+.++.
T Consensus 135 ~~al~~lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~ 193 (511)
T TIGR01278 135 DRTLTQLVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNV 193 (511)
T ss_pred HHHHHHHHHHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEE
Confidence 223322221 1 12456888998762 445677777765555543
No 74
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=55.08 E-value=1e+02 Score=29.68 Aligned_cols=145 Identities=16% Similarity=0.158 Sum_probs=86.6
Q ss_pred CHHHHHHHHHHHHHcCCCEE-ecccCcCCCchHHHHHHH-HhcCCCCCeEEEecccccCC-----CCcccccCCChHHHH
Q 019200 39 SEEDGISMIKHAFSKGITFF-DTADVYGQNANEVLLGKA-LKQLPREKIQVATKFGIAGI-----GVAGVIVKGAPDYVR 111 (344)
Q Consensus 39 ~~~~~~~~l~~Al~~Gin~~-DtA~~Yg~g~sE~~lG~~-l~~~~R~~~~I~tK~~~~~~-----~~~~~~~~~~~~~i~ 111 (344)
+.+.-.+=++.|++.|-..+ |-+ ..| .-..+.+. |+. ..+-|-| +..+.. ...+...+.+.+.+.
T Consensus 75 d~~~E~~K~~~A~~~GADtiMDLS-tgg---dl~~iR~~il~~---s~vpvGT-VPiYqa~~~~~~k~~~~~~mt~d~~~ 146 (431)
T PRK13352 75 DIEEELEKAKVAVKYGADTIMDLS-TGG---DLDEIRRAIIEA---SPVPVGT-VPIYQAAVEAARKYGSVVDMTEDDLF 146 (431)
T ss_pred CHHHHHHHHHHHHHcCCCeEeecc-CCC---CHHHHHHHHHHc---CCCCCcC-hhHHHHHHHHHhcCCChhhCCHHHHH
Confidence 55555666899999997644 443 233 23333333 332 1122221 111100 000223468889998
Q ss_pred HHHHHHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhcCCceeeeccccccccc
Q 019200 112 SCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRD 191 (344)
Q Consensus 112 ~~v~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~ 191 (344)
+.+++..+ +=+|.+-+|.- -+.+.++.++++|+ ..|+-+-...-+..+.... -.-|++...
T Consensus 147 ~~ie~qa~----~GVDfmTiHcG-------i~~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~n------~~ENPlye~ 207 (431)
T PRK13352 147 DVIEKQAK----DGVDFMTIHCG-------VTRETLERLKKSGR--IMGIVSRGGSFLAAWMLHN------NKENPLYEH 207 (431)
T ss_pred HHHHHHHH----hCCCEEEEccc-------hhHHHHHHHHhcCC--ccCeecCCHHHHHHHHHHc------CCcCchHHH
Confidence 88887776 45888999984 24568889999885 6677666666555543322 134676666
Q ss_pred hhhhHHHHHHHhCCcEEecc
Q 019200 192 IEEEIIPLCRELGIGIVPYS 211 (344)
Q Consensus 192 ~~~~l~~~~~~~gi~v~a~~ 211 (344)
. ..+++.|++++|.+-.-.
T Consensus 208 f-D~lLeI~~~yDVtlSLGD 226 (431)
T PRK13352 208 F-DYLLEILKEYDVTLSLGD 226 (431)
T ss_pred H-HHHHHHHHHhCeeeeccC
Confidence 5 479999999999884433
No 75
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=54.40 E-value=66 Score=30.44 Aligned_cols=71 Identities=11% Similarity=-0.030 Sum_probs=53.4
Q ss_pred HHHHHHHHHHcCccc-EEecCCCCHHHHHHHhhcCCceeeecccccccc-chhhhHHHHHHHhCCcEEecccC
Q 019200 143 TIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTR-DIEEEIIPLCRELGIGIVPYSPL 213 (344)
Q Consensus 143 ~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~~~gi~v~a~~pl 213 (344)
-++.+.+|++...+. ..|=+-++...+..++....++++|+.....-. ..-.++.+.|+.+|+.++.++..
T Consensus 202 d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~ 274 (361)
T cd03322 202 NQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLIDYIRTTVSHAGGITPARKIADLASLYGVRTGWHGPT 274 (361)
T ss_pred cHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeeccCCC
Confidence 366788888877665 666677888999999888888999998765431 11257999999999999876443
No 76
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=54.35 E-value=2e+02 Score=27.47 Aligned_cols=84 Identities=17% Similarity=0.045 Sum_probs=57.3
Q ss_pred EEeccCCCCCCHHHHHHHHHHHHHc------CcccEEecCCCCHHHHHHHhhcCCceeeeccccccccc-hhhhHHHHHH
Q 019200 129 YYQHRVDTSVPIEETIGEMKKLVEE------GKIKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRD-IEEEIIPLCR 201 (344)
Q Consensus 129 ~~lH~~~~~~~~~~~~~~L~~l~~~------G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~l~~~~~ 201 (344)
+++-.|-+..+.++-++.+.+|.+. +.=-..|=+.++.+.+.++++....+++|+..+-.--- ....+.++|+
T Consensus 230 ~~iEqP~~~~d~~~~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~a~div~~kl~k~GGIt~a~kia~lA~ 309 (369)
T cd03314 230 LRIEGPMDAGSREAQIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAGAAHMVQIKTPDLGGIDNTIDAVLYCK 309 (369)
T ss_pred EEEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhCCCCEEEecchhcCCHHHHHHHHHHHH
Confidence 4555554433222346667777765 33335555667889999999888889999987764321 1267999999
Q ss_pred HhCCcEEeccc
Q 019200 202 ELGIGIVPYSP 212 (344)
Q Consensus 202 ~~gi~v~a~~p 212 (344)
.+||.++..+.
T Consensus 310 a~Gi~~~~h~~ 320 (369)
T cd03314 310 EHGVGAYLGGS 320 (369)
T ss_pred HcCCcEEEeCC
Confidence 99999998654
No 77
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=54.31 E-value=23 Score=26.96 Aligned_cols=54 Identities=24% Similarity=0.201 Sum_probs=40.4
Q ss_pred CCCCHHHHHHHhhcCCceeeecccccccc-chhhhHHHHHHHhCCcEEecccCCcc
Q 019200 162 SEASPGTIRRAHAVHPITAVQMEWSLWTR-DIEEEIIPLCRELGIGIVPYSPLGRG 216 (344)
Q Consensus 162 s~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~~~gi~v~a~~pl~~G 216 (344)
+.++.+.++++++...++++|+....+-- .....+.++|+++|+.++..+. ..+
T Consensus 3 ~~~~~~~~~~li~~~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~~ 57 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAGAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ESG 57 (111)
T ss_dssp TSSSHHHHHHHHHTTSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SSH
T ss_pred CCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CCc
Confidence 45678889999998888999997655421 1126799999999999999886 544
No 78
>smart00642 Aamy Alpha-amylase domain.
Probab=54.10 E-value=27 Score=29.12 Aligned_cols=22 Identities=14% Similarity=0.294 Sum_probs=18.4
Q ss_pred hhHHHHHHHhCCcEEecccCCc
Q 019200 194 EEIIPLCRELGIGIVPYSPLGR 215 (344)
Q Consensus 194 ~~l~~~~~~~gi~v~a~~pl~~ 215 (344)
+.+++.|+++||.|+.=-++..
T Consensus 73 ~~lv~~~h~~Gi~vilD~V~NH 94 (166)
T smart00642 73 KELVDAAHARGIKVILDVVINH 94 (166)
T ss_pred HHHHHHHHHCCCEEEEEECCCC
Confidence 7899999999999997666643
No 79
>COG1801 Uncharacterized conserved protein [Function unknown]
Probab=53.92 E-value=1.7e+02 Score=26.53 Aligned_cols=108 Identities=6% Similarity=-0.061 Sum_probs=63.8
Q ss_pred ccccccccCCCCCCCCCCHHH-HHHHHHHHHHcCCCEEecc-cCcCCCchHHHHHHHHhcCCCCCeEEEecccccCCCCc
Q 019200 22 KLGYGCMNLSGGYSSPVSEED-GISMIKHAFSKGITFFDTA-DVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVA 99 (344)
Q Consensus 22 ~lglG~~~~~~~~~~~~~~~~-~~~~l~~Al~~Gin~~DtA-~~Yg~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~ 99 (344)
.||++.|+....-|...++.. ..+.+.. ....+|.+..- ..|.. .+++.+-+|.+ ...+++..+.|+......
T Consensus 4 ~IG~sGW~~~~w~~~~yp~~~~~~~~L~~-y~~~f~~VEiN~TFYa~-p~~~t~~~W~~-~~p~~FrFsvK~~~~iTH-- 78 (263)
T COG1801 4 YIGTSGWSYPDWEGLFYPEGLKKKEFLAY-YASHFNTVEINSTFYAP-PSPETVLRWAE-ETPDDFRFSVKAPRAITH-- 78 (263)
T ss_pred EEeecCCCcccccccccCcccchhhHHHH-HhccCCEEEECCcccCC-CCHHHHHHHHH-hCCCCeEEEEEecccccc--
Confidence 567777766542222222222 2333433 44457777643 34543 36788888887 468999999998654321
Q ss_pred ccccCCCh---HHHHHHHHHHHhhcCCCceeEEEeccCCCCC
Q 019200 100 GVIVKGAP---DYVRSCCEASLKRLDVDYIDLYYQHRVDTSV 138 (344)
Q Consensus 100 ~~~~~~~~---~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~ 138 (344)
..... ..+.+.+.+-++.|| +++..+++.-|....
T Consensus 79 ---~~~l~~~~~~~~~~~~~~~~~L~-~klg~il~Q~Ppsf~ 116 (263)
T COG1801 79 ---QRRLKECDFELWEFFLEPLAPLG-ERLGPILFQLPPSFK 116 (263)
T ss_pred ---hhhhccchHHHHHHHHHHHHhhh-cccceEEEecCCccc
Confidence 12222 345555555566777 689999999987553
No 80
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=52.76 E-value=1.8e+02 Score=26.36 Aligned_cols=18 Identities=17% Similarity=0.311 Sum_probs=13.4
Q ss_pred hhHHHHHHHhCCcEEecc
Q 019200 194 EEIIPLCRELGIGIVPYS 211 (344)
Q Consensus 194 ~~l~~~~~~~gi~v~a~~ 211 (344)
.++.+.|+++||..+-.-
T Consensus 137 ~~~~~~~~~~gi~~I~lv 154 (265)
T COG0159 137 DELLKAAEKHGIDPIFLV 154 (265)
T ss_pred HHHHHHHHHcCCcEEEEe
Confidence 468888888888877543
No 81
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=52.75 E-value=1.7e+02 Score=26.07 Aligned_cols=89 Identities=18% Similarity=0.134 Sum_probs=52.7
Q ss_pred HHHhhcCCCceeEEEeccCCCCCCH-HHHHHHHHHHHHcCcccEEecCC-CCHHHHHHHhhcCCceeeeccccccccch-
Q 019200 116 ASLKRLDVDYIDLYYQHRVDTSVPI-EETIGEMKKLVEEGKIKYIGLSE-ASPGTIRRAHAVHPITAVQMEWSLWTRDI- 192 (344)
Q Consensus 116 ~SL~rLg~d~iDl~~lH~~~~~~~~-~~~~~~L~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~~~n~~~~~~- 192 (344)
+-|+.+| +|.+.+|..+..... .--++.+.++++.-.+.-|.... .+++.+.++.....++.+.+---+.....
T Consensus 162 ~~l~~~G---~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~ 238 (254)
T TIGR00735 162 KEVEKLG---AGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREIT 238 (254)
T ss_pred HHHHHcC---CCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCC
Confidence 3456667 566667765443211 11255666666665666666654 36788888888765666554222222221
Q ss_pred hhhHHHHHHHhCCcE
Q 019200 193 EEEIIPLCRELGIGI 207 (344)
Q Consensus 193 ~~~l~~~~~~~gi~v 207 (344)
..++.+.|+++||.+
T Consensus 239 ~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 239 IGEVKEYLAERGIPV 253 (254)
T ss_pred HHHHHHHHHHCCCcc
Confidence 257899999999865
No 82
>COG1151 6Fe-6S prismane cluster-containing protein [Energy production and conversion]
Probab=52.58 E-value=69 Score=32.10 Aligned_cols=125 Identities=14% Similarity=0.082 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHhhcCCCceeEEEeccC---CCCCCHHHHHHHHHHHHHcCcccEEec----CCC--CHHHHHHHhhcCCc
Q 019200 108 DYVRSCCEASLKRLDVDYIDLYYQHRV---DTSVPIEETIGEMKKLVEEGKIKYIGL----SEA--SPGTIRRAHAVHPI 178 (344)
Q Consensus 108 ~~i~~~v~~SL~rLg~d~iDl~~lH~~---~~~~~~~~~~~~L~~l~~~G~ir~iGv----s~~--~~~~l~~~~~~~~~ 178 (344)
+...+-|+..++..+-.+.+ -|-. .....+.++.+.|-+++++|+||.+.+ ++- ..+....+.+..|=
T Consensus 360 ~~~~~vIe~A~e~~~~r~~~---~~~ivvGFs~~~il~a~d~lielI~sGkIKgv~~v~GCd~~~~~~~yvt~~kelipr 436 (576)
T COG1151 360 EDFSEVIEMAIENFKNRKSE---KHKIVVGFSHESILAAADPLIELIASGKIKGVVVVVGCDGLRSGRHYVTLFKELIPR 436 (576)
T ss_pred hhHHHHHHHHHhccCCcccc---cceeEEeecHHHHHHHHHHHHHHHhcCCcceEEEEeeCCCCCCCcccHHHHHHhccc
Confidence 66778888999988877766 2211 112235567778999999999998755 221 22234444444444
Q ss_pred eeeeccccccccchhhhHHHHHHHhCCcEEecccCCcccCCCCCCCCCCCCCcccccccCccccchhhhHHHHHHHHHHH
Q 019200 179 TAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSFLHFLPRFKGENLDRNKSIYFRIGNLA 258 (344)
Q Consensus 179 ~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la 258 (344)
+++-+...--.- .-..+++|...||+-+. ..|. ....-.......++|
T Consensus 437 D~lVLt~GCgk~--~~~~~~vc~~lGIPpVL----d~Gq--------------------------CnD~~r~~~la~aLa 484 (576)
T COG1151 437 DILVLTLGCGKY--RFNKADVGDILGIPRVL----DFGQ--------------------------CNDIYRIIVLALALA 484 (576)
T ss_pred ceEEEecccchh--hhhhhccccccCCCccc----cccc--------------------------cchHHHHHHHHHHHH
Confidence 444432222111 12345788888876542 2232 233445556677788
Q ss_pred HHcCCCHHH
Q 019200 259 KKYNCTSAQ 267 (344)
Q Consensus 259 ~~~~~s~~q 267 (344)
+..|++..|
T Consensus 485 e~lgvdI~d 493 (576)
T COG1151 485 EVLGLDIND 493 (576)
T ss_pred HHhCCCCcc
Confidence 888875433
No 83
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=52.24 E-value=1e+02 Score=29.25 Aligned_cols=211 Identities=18% Similarity=0.107 Sum_probs=96.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEecccCcCCCchHHHHH---HHHhcCCCCCeEEEecccccCCCCcccccCCChHHHHHHHH
Q 019200 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLG---KALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCE 115 (344)
Q Consensus 39 ~~~~~~~~l~~Al~~Gin~~DtA~~Yg~g~sE~~lG---~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~ 115 (344)
+.++..+.|+.|.+.|++.+=|+-+...+..+..+. +.++..+...+.|..=+.+..-. .-..+.+.+
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~~l~----~lg~~~~dl----- 82 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPEDDPEDYLERLKELLKLAKELGMEVIADISPKVLK----KLGISYDDL----- 82 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE---------HHHHHHHHHHHHHHCT-EEEEEE-CCHHH----TTT-BTTBT-----
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHH----HcCCCHHHH-----
Confidence 678899999999999999999998886543333222 22222233455555444322100 000111111
Q ss_pred HHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhcCC-ceeeeccccccccch--
Q 019200 116 ASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHP-ITAVQMEWSLWTRDI-- 192 (344)
Q Consensus 116 ~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~-~~~~q~~~n~~~~~~-- 192 (344)
..++.||++. +=|. ..-. .+.+.+|-+.|.--.+=.|+.+.+.+..+.+... +.-+..-.|.+-+..
T Consensus 83 ~~~~~lGi~~---lRlD---~Gf~----~~~ia~ls~ng~~I~LNASti~~~~l~~L~~~~~~~~~i~a~HNfYPr~~TG 152 (357)
T PF05913_consen 83 SFFKELGIDG---LRLD---YGFS----GEEIAKLSKNGIKIELNASTITEEELDELIKYGANFSNIIACHNFYPRPYTG 152 (357)
T ss_dssp HHHHHHT-SE---EEES---SS-S----CHHHHHHTTT-SEEEEETTT--CCHHHHHCCTT--GGGEEEE---B-STT-S
T ss_pred HHHHHcCCCE---EEEC---CCCC----HHHHHHHHhCCCEEEEECCCCChHHHHHHHHhcCCHHHeEEEecccCCCCCC
Confidence 1345566432 2221 1111 2344455555775566668878888888877643 443444445443321
Q ss_pred -----hhhHHHHHHHhCCcEEecccCCcccCCCCCCCCCCCCCcccccccCccccchhhhHHHHHHHHHHHHHcCCCHHH
Q 019200 193 -----EEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSFLHFLPRFKGENLDRNKSIYFRIGNLAKKYNCTSAQ 267 (344)
Q Consensus 193 -----~~~l~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~q 267 (344)
-.+.-.+.++.|+.+.|+-|-.. ...|. -....|. ++ +|---+..
T Consensus 153 Ls~~~f~~~n~~~k~~gi~~~AFI~g~~-~~rGP-l~~GLPT--------------lE--------------~hR~~~p~ 202 (357)
T PF05913_consen 153 LSEEFFIEKNQLLKEYGIKTAAFIPGDE-NKRGP-LYEGLPT--------------LE--------------KHRNLPPY 202 (357)
T ss_dssp B-HHHHHHHHHHHHHTT-EEEEEE--SS-S-BTT-T-S--BS--------------BG--------------GGTTS-HH
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEecCCC-cccCC-ccCCCCc--------------cH--------------HHcCCCHH
Confidence 13455667788999999877652 22222 0001111 00 22223455
Q ss_pred HHHHHHHhCCCCeEeecCCC--CHHHHHHHHhh
Q 019200 268 LALAWVLGQGDDVVPIPGTT--KMKNLDDNIDS 298 (344)
Q Consensus 268 lal~~~l~~~~v~~vi~G~~--~~~~l~~nl~a 298 (344)
+|...++..+.|.-|++|-. +.+.+++....
T Consensus 203 ~aa~~L~~~~~iD~V~IGD~~~s~~el~~~~~~ 235 (357)
T PF05913_consen 203 AAALELFALGLIDDVIIGDPFASEEELKQLAQY 235 (357)
T ss_dssp HHHHHHHHTTT--EEEE-SC---HHHHHHHHHC
T ss_pred HHHHHHHhcCCCCEEEECCCcCCHHHHHHHHHH
Confidence 67788888888899999976 44555554443
No 84
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=52.07 E-value=1.8e+02 Score=26.17 Aligned_cols=133 Identities=12% Similarity=0.109 Sum_probs=73.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEecccCcCCCc----h--HHHHHHHHhcCCCCCeEEEecccccCCCCcccccCCChHHH
Q 019200 37 PVSEEDGISMIKHAFSKGITFFDTADVYGQNA----N--EVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYV 110 (344)
Q Consensus 37 ~~~~~~~~~~l~~Al~~Gin~~DtA~~Yg~g~----s--E~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i 110 (344)
.+|.+...+.++..++.|++-+=...+.|.+. . ++++..+.+.. ..++-|..-++.. +.+..
T Consensus 14 ~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~-~~~~~vi~gv~~~-----------~~~~~ 81 (281)
T cd00408 14 EVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAV-AGRVPVIAGVGAN-----------STREA 81 (281)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHh-CCCCeEEEecCCc-----------cHHHH
Confidence 36889999999999999999888666655532 2 34555555432 2344444444321 22222
Q ss_pred HHHHHHHHhhcCCCceeEEEeccCCCC-CCHHHHHHHHHHHHHcCcccEEec--------CCCCHHHHHHHhhcCCceee
Q 019200 111 RSCCEASLKRLDVDYIDLYYQHRVDTS-VPIEETIGEMKKLVEEGKIKYIGL--------SEASPGTIRRAHAVHPITAV 181 (344)
Q Consensus 111 ~~~v~~SL~rLg~d~iDl~~lH~~~~~-~~~~~~~~~L~~l~~~G~ir~iGv--------s~~~~~~l~~~~~~~~~~~~ 181 (344)
.+..+ ..+.+| +|.+++.-|... ..-+++++.+.++.++-.+- +.+ .+.+++.+.++.+. +.++
T Consensus 82 i~~a~-~a~~~G---ad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~p-i~iYn~P~~tg~~l~~~~~~~L~~~--~~v~ 154 (281)
T cd00408 82 IELAR-HAEEAG---ADGVLVVPPYYNKPSQEGIVAHFKAVADASDLP-VILYNIPGRTGVDLSPETIARLAEH--PNIV 154 (281)
T ss_pred HHHHH-HHHHcC---CCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCC-EEEEECccccCCCCCHHHHHHHhcC--CCEE
Confidence 22222 335566 566666666432 24466777777777653221 111 13466777777652 2455
Q ss_pred ecccccc
Q 019200 182 QMEWSLW 188 (344)
Q Consensus 182 q~~~n~~ 188 (344)
-+.++..
T Consensus 155 giK~s~~ 161 (281)
T cd00408 155 GIKDSSG 161 (281)
T ss_pred EEEeCCC
Confidence 5555553
No 85
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=51.72 E-value=78 Score=31.05 Aligned_cols=61 Identities=20% Similarity=0.231 Sum_probs=40.3
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEe-ccCCCC----------C-CHHHH----HHHHHHHHHcCcccEEecCCCCH
Q 019200 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQ-HRVDTS----------V-PIEET----IGEMKKLVEEGKIKYIGLSEASP 166 (344)
Q Consensus 104 ~~~~~~i~~~v~~SL~rLg~d~iDl~~l-H~~~~~----------~-~~~~~----~~~L~~l~~~G~ir~iGvs~~~~ 166 (344)
.-+.+.+.+.++..+ +|+.++|.+|.+ |.|... . +.++. -.+.+.|.+.|. ..+|+++|..
T Consensus 215 gqt~e~~~~tl~~~~-~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy-~~~~~~~far 291 (453)
T PRK13347 215 HQTVESFRETLDKVI-ALSPDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGY-VPIGLDHFAL 291 (453)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCC-EEEeccceeC
Confidence 357888888888655 699999999876 333210 1 12222 245677888887 5589999854
No 86
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=50.73 E-value=2.4e+02 Score=27.14 Aligned_cols=151 Identities=11% Similarity=0.046 Sum_probs=88.6
Q ss_pred CHHHHHHHHHHHHH-cCCCEEecccCcCCCch-HHHHHHHHhcCCCCCeEEEecccccCCCCcccccCCChHHHHHHHHH
Q 019200 39 SEEDGISMIKHAFS-KGITFFDTADVYGQNAN-EVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEA 116 (344)
Q Consensus 39 ~~~~~~~~l~~Al~-~Gin~~DtA~~Yg~g~s-E~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~ 116 (344)
+.++..+.++.+++ .|++.|=.--.-.+... .+.+. ++++.-. ++.|..-.. ..++.+.. .+
T Consensus 168 ~~e~~~~~a~~~~~~~Gf~~~KiKvG~~~~~~di~~v~-avRea~~-~~~l~vDaN----------~~w~~~~A----~~ 231 (395)
T cd03323 168 TPEGVVRLARAAIDRYGFKSFKLKGGVLPGEEEIEAVK-ALAEAFP-GARLRLDPN----------GAWSLETA----IR 231 (395)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEecCCCCHHHHHHHHH-HHHHhCC-CCcEEEeCC----------CCcCHHHH----HH
Confidence 55666666777775 69998753210001011 12222 2332111 333333221 12455443 23
Q ss_pred HHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCccc-EEecCCCCHHHHHHHhhcCCceeeeccccccccc-hhh
Q 019200 117 SLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRD-IEE 194 (344)
Q Consensus 117 SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~ 194 (344)
.+++|. . ++.++-.|-. -++.+.+|+++..+- +.|=+-++.+++.++++...++++|......--- ...
T Consensus 232 ~~~~l~--~-~l~~iEeP~~------d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~avdil~~d~~~~GGit~~~ 302 (395)
T cd03323 232 LAKELE--G-VLAYLEDPCG------GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNAVDIPLADHHFWGGMRGSV 302 (395)
T ss_pred HHHhcC--c-CCCEEECCCC------CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCCCcEEeeccccccCHHHHH
Confidence 344553 2 6666666543 367788888877665 6666667888899998888899999987654321 126
Q ss_pred hHHHHHHHhCCcEEecccCC
Q 019200 195 EIIPLCRELGIGIVPYSPLG 214 (344)
Q Consensus 195 ~l~~~~~~~gi~v~a~~pl~ 214 (344)
++...|+.+||.++.++...
T Consensus 303 kia~~A~~~gi~~~~h~~~e 322 (395)
T cd03323 303 RVAQVCETWGLGWGMHSNNH 322 (395)
T ss_pred HHHHHHHHcCCeEEEecCcc
Confidence 79999999999998877543
No 87
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=50.57 E-value=29 Score=27.77 Aligned_cols=25 Identities=32% Similarity=0.575 Sum_probs=21.4
Q ss_pred cchhhhHHHHHHHhCCcEEecccCC
Q 019200 190 RDIEEEIIPLCRELGIGIVPYSPLG 214 (344)
Q Consensus 190 ~~~~~~l~~~~~~~gi~v~a~~pl~ 214 (344)
++...++++.|++.||.|++|-.+.
T Consensus 43 ~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 43 RDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred cCHHHHHHHHHHHCCCEEEEEEeee
Confidence 4445789999999999999998876
No 88
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=50.20 E-value=72 Score=28.04 Aligned_cols=114 Identities=11% Similarity=0.047 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHcCCCEEecccCcCCCchHHHHHHHHhc-----CCCCCeEEEecccccCCCCcccccCCChHHHHHHHH
Q 019200 41 EDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ-----LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCE 115 (344)
Q Consensus 41 ~~~~~~l~~Al~~Gin~~DtA~~Yg~g~sE~~lG~~l~~-----~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~ 115 (344)
--+..++.-+++.|.+..=.+ +|..+-+++++ .+=.+.++.-++......- ......+...+.-++
T Consensus 43 vLsqr~~YG~L~~g~~v~yvs-------Te~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~--~~~~~~~~~~~~~L~ 113 (235)
T COG2874 43 VLSQRFAYGFLMNGYRVTYVS-------TELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNL--EPVNWGRRSARKLLD 113 (235)
T ss_pred HHHHHHHHHHHhCCceEEEEE-------echhHHHHHHHHHhcCCCchHHHhcceeEEEEecc--cccccChHHHHHHHH
Confidence 346888888999999876433 67788888876 2223333333332221100 012355666677777
Q ss_pred HHHhhcCCCceeEEEeccCCCC------CCHHHHHHHHHHHHHcCcccEEecCC
Q 019200 116 ASLKRLDVDYIDLYYQHRVDTS------VPIEETIGEMKKLVEEGKIKYIGLSE 163 (344)
Q Consensus 116 ~SL~rLg~d~iDl~~lH~~~~~------~~~~~~~~~L~~l~~~G~ir~iGvs~ 163 (344)
..++....-.-|++.+...+.- ....+.+..+..|.+.||+--+=+..
T Consensus 114 ~l~~~~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIilTvhp 167 (235)
T COG2874 114 LLLEFIKRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVIILTVHP 167 (235)
T ss_pred HHHhhHHhhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhCCCEEEEEeCh
Confidence 7777777767799999887532 13346677788888999987776643
No 89
>COG0218 Predicted GTPase [General function prediction only]
Probab=49.99 E-value=1.7e+02 Score=25.29 Aligned_cols=101 Identities=15% Similarity=0.001 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHH------cCCCEEecccCcCCCchHHHHHHHHhcCCCCCeEEEecccccCCCCcccccCCChHHHHHH
Q 019200 40 EEDGISMIKHAFS------KGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSC 113 (344)
Q Consensus 40 ~~~~~~~l~~Al~------~Gin~~DtA~~Yg~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~ 113 (344)
.+....++...++ ..|-++|.-..-- ..++-+=+++......=+++.||.- ........+.
T Consensus 90 ~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~--~~D~em~~~l~~~~i~~~vv~tK~D-----------Ki~~~~~~k~ 156 (200)
T COG0218 90 KEKWKKLIEEYLEKRANLKGVVLLIDARHPPK--DLDREMIEFLLELGIPVIVVLTKAD-----------KLKKSERNKQ 156 (200)
T ss_pred HHHHHHHHHHHHhhchhheEEEEEEECCCCCc--HHHHHHHHHHHHcCCCeEEEEEccc-----------cCChhHHHHH
Confidence 3445666666654 3566788543332 2567777888776777789999983 3556677888
Q ss_pred HHHHHhhcCCCceeE--EEeccCCCCCCHHHHHHHHHHHHHc
Q 019200 114 CEASLKRLDVDYIDL--YYQHRVDTSVPIEETIGEMKKLVEE 153 (344)
Q Consensus 114 v~~SL~rLg~d~iDl--~~lH~~~~~~~~~~~~~~L~~l~~~ 153 (344)
+....++|+.+..|- +++........+++++..+.+....
T Consensus 157 l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 157 LNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred HHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 899999998777665 5555555556788998888877653
No 90
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=49.64 E-value=89 Score=28.12 Aligned_cols=67 Identities=19% Similarity=0.208 Sum_probs=50.8
Q ss_pred CChHHHHHHHHHHHhhcCC--------------------------CceeEEEeccCCCCCCH---HHHHHHHHHHHHcCc
Q 019200 105 GAPDYVRSCCEASLKRLDV--------------------------DYIDLYYQHRVDTSVPI---EETIGEMKKLVEEGK 155 (344)
Q Consensus 105 ~~~~~i~~~v~~SL~rLg~--------------------------d~iDl~~lH~~~~~~~~---~~~~~~L~~l~~~G~ 155 (344)
.+.+. ++.++++|+++|. ...|+++|.-|....+. .++++.|.+|+++|+
T Consensus 112 ~~~~d-~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~ 190 (254)
T COG1121 112 LNKKD-KEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK 190 (254)
T ss_pred ccHHH-HHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence 44455 7888889998886 44688888888765443 478999999999987
Q ss_pred ccEEecCCCCHHHHHHHhh
Q 019200 156 IKYIGLSEASPGTIRRAHA 174 (344)
Q Consensus 156 ir~iGvs~~~~~~l~~~~~ 174 (344)
.|=+.+|+...+.+..+
T Consensus 191 --tIl~vtHDL~~v~~~~D 207 (254)
T COG1121 191 --TVLMVTHDLGLVMAYFD 207 (254)
T ss_pred --EEEEEeCCcHHhHhhCC
Confidence 77788888877766544
No 91
>PRK12928 lipoyl synthase; Provisional
Probab=49.54 E-value=2.1e+02 Score=26.22 Aligned_cols=76 Identities=17% Similarity=0.215 Sum_probs=46.8
Q ss_pred CCHHHHHHHHHHHHHcC---ccc---EEecCCCCHHHHHHHhhc---CCceeeec-cccc-------ccc----chhhhH
Q 019200 138 VPIEETIGEMKKLVEEG---KIK---YIGLSEASPGTIRRAHAV---HPITAVQM-EWSL-------WTR----DIEEEI 196 (344)
Q Consensus 138 ~~~~~~~~~L~~l~~~G---~ir---~iGvs~~~~~~l~~~~~~---~~~~~~q~-~~n~-------~~~----~~~~~l 196 (344)
...++.++.++.+++.| .++ -+|+ +-+.+++.+.+.. ..++.+.+ +|.. +.+ .....+
T Consensus 185 ~t~e~~le~l~~ak~~gp~i~~~s~iIvG~-GET~ed~~etl~~Lrel~~d~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~ 263 (290)
T PRK12928 185 ADYQRSLDLLARAKELAPDIPTKSGLMLGL-GETEDEVIETLRDLRAVGCDRLTIGQYLRPSLAHLPVQRYWTPEEFEAL 263 (290)
T ss_pred CCHHHHHHHHHHHHHhCCCceecccEEEeC-CCCHHHHHHHHHHHHhcCCCEEEEEcCCCCCccCCceeeccCHHHHHHH
Confidence 35678899999999988 343 3466 4455554443332 44444433 4432 111 111568
Q ss_pred HHHHHHhCCcEEecccCC
Q 019200 197 IPLCRELGIGIVPYSPLG 214 (344)
Q Consensus 197 ~~~~~~~gi~v~a~~pl~ 214 (344)
.+.+.+.|...++.+||-
T Consensus 264 ~~~~~~~g~~~~~~~p~~ 281 (290)
T PRK12928 264 GQIARELGFSHVRSGPLV 281 (290)
T ss_pred HHHHHHcCCceeEecCcc
Confidence 888889999999998886
No 92
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=49.41 E-value=85 Score=28.68 Aligned_cols=117 Identities=15% Similarity=0.154 Sum_probs=70.3
Q ss_pred HHHHHHHHcCcccEEecCCCCHHHHHHHhhc----CCceeeeccccccccch--hhhHHHHHHHhCCcEEecccCCcccC
Q 019200 145 GEMKKLVEEGKIKYIGLSEASPGTIRRAHAV----HPITAVQMEWSLWTRDI--EEEIIPLCRELGIGIVPYSPLGRGFF 218 (344)
Q Consensus 145 ~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~----~~~~~~q~~~n~~~~~~--~~~l~~~~~~~gi~v~a~~pl~~G~L 218 (344)
+.++.|....++..+--++.+.+.+.++.+. .+..-..+.-.+++... ...+.+++++-++-++.-+.-+..
T Consensus 145 ~d~~~l~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~vD~miVVGg~nSsN-- 222 (280)
T TIGR00216 145 EDLENFKVEDLLGVVSQTTLSQEDTKEIVAELKARVPQKEVPVFNTICYATQNRQDAVKELAPEVDLMIVIGGKNSSN-- 222 (280)
T ss_pred HHHHhCCCCCcEEEEEcCCCcHHHHHHHHHHHHHhCCCcCCCCCCCcccccHHHHHHHHHHHhhCCEEEEECCCCCch--
Confidence 3444444445566666677777766665443 21122222222222211 246888888877766653222210
Q ss_pred CCCCCCCCCCCCcccccccCccccchhhhHHHHHHHHHHHHHcCC------CHHHHHHHHHHhCCCCeEeecCCCCHHHH
Q 019200 219 GGKAVVENVPADSFLHFLPRFKGENLDRNKSIYFRIGNLAKKYNC------TSAQLALAWVLGQGDDVVPIPGTTKMKNL 292 (344)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~------s~~qlal~~~l~~~~v~~vi~G~~~~~~l 292 (344)
...|.++|+++|. +..++-..|.-.... ..+..|+|+|+.+
T Consensus 223 --------------------------------T~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~~-VGiTAGASTP~~l 269 (280)
T TIGR00216 223 --------------------------------TTRLYEIAEEHGPPSYLIETAEELPEEWLKGVKV-VGITAGASTPDWI 269 (280)
T ss_pred --------------------------------HHHHHHHHHHhCCCEEEECChHHCCHHHhCCCCE-EEEEecCCCCHHH
Confidence 1578889988873 788999999876654 5788999999976
Q ss_pred HHHH
Q 019200 293 DDNI 296 (344)
Q Consensus 293 ~~nl 296 (344)
-+.+
T Consensus 270 i~eV 273 (280)
T TIGR00216 270 IEEV 273 (280)
T ss_pred HHHH
Confidence 5543
No 93
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=49.12 E-value=78 Score=29.23 Aligned_cols=108 Identities=14% Similarity=0.084 Sum_probs=65.5
Q ss_pred CcccEEecCCCCHHHHHHHhhcC--C-ceeeeccccccccc-h--hhhHHHHHHHhCCcEEecccCCcccCCCCCCCCCC
Q 019200 154 GKIKYIGLSEASPGTIRRAHAVH--P-ITAVQMEWSLWTRD-I--EEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENV 227 (344)
Q Consensus 154 G~ir~iGvs~~~~~~l~~~~~~~--~-~~~~q~~~n~~~~~-~--~~~l~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~ 227 (344)
.++-.+--++++.+.+.++.+.. . +.+....+|-++.. . ...+.+++++.++-++.-+.-+..
T Consensus 156 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~RQ~a~~~La~~vD~miVVGg~~SsN----------- 224 (298)
T PRK01045 156 DKLALVTQTTLSVDDTAEIIAALKERFPEIQGPPKDDICYATQNRQEAVKELAPQADLVIVVGSKNSSN----------- 224 (298)
T ss_pred CcEEEEEcCCCcHHHHHHHHHHHHHhCcCcccCCCCCcchhhHHHHHHHHHHHhhCCEEEEECCCCCcc-----------
Confidence 55666666777777666655431 1 11111122322221 1 246888888877777663322210
Q ss_pred CCCcccccccCccccchhhhHHHHHHHHHHHHHcCC------CHHHHHHHHHHhCCCCeEeecCCCCHHHHHHHH
Q 019200 228 PADSFLHFLPRFKGENLDRNKSIYFRIGNLAKKYNC------TSAQLALAWVLGQGDDVVPIPGTTKMKNLDDNI 296 (344)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~------s~~qlal~~~l~~~~v~~vi~G~~~~~~l~~nl 296 (344)
...|.++|++++. +..++-..|..... ...+..|+|+|+.+-+.+
T Consensus 225 -----------------------T~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~-~VGitaGASTP~~li~eV 275 (298)
T PRK01045 225 -----------------------SNRLREVAEEAGAPAYLIDDASEIDPEWFKGVK-TVGVTAGASAPEWLVQEV 275 (298)
T ss_pred -----------------------HHHHHHHHHHHCCCEEEECChHHCcHHHhcCCC-EEEEEecCCCCHHHHHHH
Confidence 1578888888763 68999999996554 457889999999765543
No 94
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=49.01 E-value=62 Score=30.56 Aligned_cols=100 Identities=8% Similarity=-0.045 Sum_probs=57.5
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEeccCCC---CCCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhcCCcee
Q 019200 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDT---SVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITA 180 (344)
Q Consensus 104 ~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~---~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~ 180 (344)
.++.+.-. .+-+.|.++|+++|++-..-.|.. ..+.++.++.+. +...+++.++. .+...++.+++... +.
T Consensus 64 ~~s~e~Ki-~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~---~~~~~~~~~l~-~n~~die~A~~~g~-~~ 137 (347)
T PLN02746 64 IVPTSVKV-ELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVR---NLEGARFPVLT-PNLKGFEAAIAAGA-KE 137 (347)
T ss_pred CCCHHHHH-HHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHH---hccCCceeEEc-CCHHHHHHHHHcCc-CE
Confidence 35555444 445569999999999976555432 123344555554 32335555554 47788888887633 22
Q ss_pred eecc---------ccccccchh-----hhHHHHHHHhCCcEEe
Q 019200 181 VQME---------WSLWTRDIE-----EEIIPLCRELGIGIVP 209 (344)
Q Consensus 181 ~q~~---------~n~~~~~~~-----~~l~~~~~~~gi~v~a 209 (344)
+.+. .|+-....+ .+++++++++|+.+.+
T Consensus 138 v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~ 180 (347)
T PLN02746 138 VAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRG 180 (347)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 3222 222111111 4689999999998853
No 95
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=48.89 E-value=99 Score=29.20 Aligned_cols=73 Identities=8% Similarity=0.106 Sum_probs=51.1
Q ss_pred HHHHHHHHHHcCccc-EEecCCCCHHHHHHHhhcCCceeeecccccccc-chhhhHHHHHHHhCCcEEecccCCc
Q 019200 143 TIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTR-DIEEEIIPLCRELGIGIVPYSPLGR 215 (344)
Q Consensus 143 ~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~~~gi~v~a~~pl~~ 215 (344)
.++.+.+|+++..+. +.|=+-++.+.+.++++...++++|+....+-. .....+..+|+++|+.++..+-+..
T Consensus 227 ~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~~~~s 301 (365)
T cd03318 227 NLDGLARLRSRNRVPIMADESVSGPADAFELARRGAADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGTMLES 301 (365)
T ss_pred cHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCCCeEEEeecccCCHHHHHHHHHHHHHcCCceeecCcchh
Confidence 366777777776555 555556678888888888778888887655421 1126789999999999886544443
No 96
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=48.76 E-value=2.1e+02 Score=26.84 Aligned_cols=108 Identities=23% Similarity=0.215 Sum_probs=0.0
Q ss_pred cccCCChHHHHHHHHHHHhhcCCCceeEE--------EeccCCCCCCHHHHHHHHHHHHHcCcccEEec-CCCCHHHHHH
Q 019200 101 VIVKGAPDYVRSCCEASLKRLDVDYIDLY--------YQHRVDTSVPIEETIGEMKKLVEEGKIKYIGL-SEASPGTIRR 171 (344)
Q Consensus 101 ~~~~~~~~~i~~~v~~SL~rLg~d~iDl~--------~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGv-s~~~~~~l~~ 171 (344)
..+.++.+.+.+-++. |.+.|+++|.+- .+.--....+..+.++.+.+.+..-++..+-+ ...+...++.
T Consensus 18 ~~~~f~~~~~~~i~~~-L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~ 96 (337)
T PRK08195 18 VRHQYTLEQVRAIARA-LDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVKQAKIAALLLPGIGTVDDLKM 96 (337)
T ss_pred CCCccCHHHHHHHHHH-HHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCCCCEEEEEeccCcccHHHHHH
Q ss_pred HhhcCCceeeeccccccccchhhhHHHHHHHhCCcEEec
Q 019200 172 AHAVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPY 210 (344)
Q Consensus 172 ~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~ 210 (344)
+.+ ..++.+.+..+.-+.......+++++++|+.+...
T Consensus 97 a~~-~gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~ 134 (337)
T PRK08195 97 AYD-AGVRVVRVATHCTEADVSEQHIGLARELGMDTVGF 134 (337)
T ss_pred HHH-cCCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEE
No 97
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=47.81 E-value=1.4e+02 Score=28.34 Aligned_cols=28 Identities=25% Similarity=0.261 Sum_probs=22.1
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEec
Q 019200 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQH 132 (344)
Q Consensus 104 ~~~~~~i~~~v~~SL~rLg~d~iDl~~lH 132 (344)
.-+.+.+++.++..+ +|+.+++.+|.+.
T Consensus 171 gqt~~~~~~tl~~~~-~l~~~~i~~y~l~ 198 (375)
T PRK05628 171 GESDDDWRASLDAAL-EAGVDHVSAYALI 198 (375)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEeeeee
Confidence 457888888888544 5999999998876
No 98
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=47.36 E-value=59 Score=30.82 Aligned_cols=73 Identities=10% Similarity=0.037 Sum_probs=52.2
Q ss_pred HHHHHHHHHcCccc-EEecCCCCHHHHHHHhhcCCceeeecccccccc-chhhhHHHHHHHhCCcEEecccCCcc
Q 019200 144 IGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTR-DIEEEIIPLCRELGIGIVPYSPLGRG 216 (344)
Q Consensus 144 ~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~~~gi~v~a~~pl~~G 216 (344)
++.+.+|++...+. ..|=+-++...+.+++....++++|+.....-. .....+...|+.+|+.++..+.+.++
T Consensus 227 ~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~~s~ 301 (368)
T TIGR02534 227 REALARLTRRFNVPIMADESVTGPADALAIAKASAADVFALKTTKSGGLLESKKIAAIAEAAGIALYGGTMLEGP 301 (368)
T ss_pred HHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCCceeeecchhhH
Confidence 66677777776555 666677788888888888778889987665321 11257999999999998876544443
No 99
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=47.36 E-value=2.7e+02 Score=27.03 Aligned_cols=108 Identities=16% Similarity=0.154 Sum_probs=56.0
Q ss_pred cCcCCCchHHHHHHHHhc----CCCCCeEEEecccccCCCCcccccCCChHHHHHHHHHHHhhcCC-CceeEEEeccCCC
Q 019200 62 DVYGQNANEVLLGKALKQ----LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDV-DYIDLYYQHRVDT 136 (344)
Q Consensus 62 ~~Yg~g~sE~~lG~~l~~----~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~SL~rLg~-d~iDl~~lH~~~~ 136 (344)
-.|| .|+-|-+++++ .+.+=++|.|-+-... --+.+...+++.-++... ..+.++.++.|..
T Consensus 65 ~V~G---g~~~L~~ai~~~~~~~~p~~I~v~ttC~~~i----------iGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf 131 (435)
T cd01974 65 AVFG---GQNNLIDGLKNAYAVYKPDMIAVSTTCMAEV----------IGDDLNAFIKNAKNKGSIPADFPVPFANTPSF 131 (435)
T ss_pred eEEC---cHHHHHHHHHHHHHhcCCCEEEEeCCchHhh----------hhccHHHHHHHHHHhccCCCCCeEEEecCCCC
Confidence 4666 46677777765 3445567777764332 122344444433333311 1478999998865
Q ss_pred CCC----HHHHHHHHH-HHHH-------cCcccEEecCC--CC-HHHHHHHhhcCCceeee
Q 019200 137 SVP----IEETIGEMK-KLVE-------EGKIKYIGLSE--AS-PGTIRRAHAVHPITAVQ 182 (344)
Q Consensus 137 ~~~----~~~~~~~L~-~l~~-------~G~ir~iGvs~--~~-~~~l~~~~~~~~~~~~q 182 (344)
... .+.++++|- .+.. .+.|.-||-.+ .+ .+.++++++...+.++.
T Consensus 132 ~gs~~~G~~~a~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~~~ 192 (435)
T cd01974 132 VGSHITGYDNMVKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDYTI 192 (435)
T ss_pred ccCHHHHHHHHHHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCEEE
Confidence 432 233444443 2222 33466665222 12 56777777776555543
No 100
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=46.96 E-value=1.1e+02 Score=31.39 Aligned_cols=69 Identities=13% Similarity=0.126 Sum_probs=48.8
Q ss_pred hhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecC-CCCHHHHHHHhhcCCceeeeccccc
Q 019200 119 KRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPGTIRRAHAVHPITAVQMEWSL 187 (344)
Q Consensus 119 ~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~n~ 187 (344)
..+|.|++=+++..........+.+...+.+......++.+||. |-+++.+.++.+...++++|+.-+.
T Consensus 20 ~~~gaD~iGfIf~~~SpR~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~~~ld~vQLHG~e 89 (610)
T PRK13803 20 VDMLPDFIGFIFYEKSPRFVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKKNGIDFVQLHGAE 89 (610)
T ss_pred HHcCCCEEEEEecCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCCC
Confidence 45899999998666555555555523333333333357789995 7788999999988899999997543
No 101
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=46.71 E-value=2.5e+02 Score=26.30 Aligned_cols=108 Identities=20% Similarity=0.194 Sum_probs=0.0
Q ss_pred cccCCChHHHHHHHHHHHhhcCCCceeEE--------EeccCCCCCCHHHHHHHHHHHHHcCcccEEecCCC-CHHHHHH
Q 019200 101 VIVKGAPDYVRSCCEASLKRLDVDYIDLY--------YQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA-SPGTIRR 171 (344)
Q Consensus 101 ~~~~~~~~~i~~~v~~SL~rLg~d~iDl~--------~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~-~~~~l~~ 171 (344)
..+.++.+.+.+-++. |.+.|+++|.+- .+..-....+-.+.++.+.+..+.-++..+-+... +.+.++.
T Consensus 17 ~~~~f~~~~~~~ia~~-Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~ 95 (333)
T TIGR03217 17 IRHQFTIEQVRAIAAA-LDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPGIGTVHDLKA 95 (333)
T ss_pred CCCcCCHHHHHHHHHH-HHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEeccCccCHHHHHH
Q ss_pred HhhcCCceeeeccccccccchhhhHHHHHHHhCCcEEec
Q 019200 172 AHAVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPY 210 (344)
Q Consensus 172 ~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~ 210 (344)
+.+ ..++.+.+..+.-+-+.....+++++++|+.+...
T Consensus 96 a~~-~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~ 133 (333)
T TIGR03217 96 AYD-AGARTVRVATHCTEADVSEQHIGMARELGMDTVGF 133 (333)
T ss_pred HHH-CCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEE
No 102
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=46.70 E-value=46 Score=24.00 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=24.1
Q ss_pred hhhHHHHHHHHHHHHHcCCCHHHHHHHH
Q 019200 245 DRNKSIYFRIGNLAKKYNCTSAQLALAW 272 (344)
Q Consensus 245 ~~~~~~~~~l~~la~~~~~s~~qlal~~ 272 (344)
+...+.+..|.++|++.|++.++||.-.
T Consensus 48 ~~V~~sl~kL~~La~~N~v~feeLc~YA 75 (82)
T PF11020_consen 48 EKVMDSLSKLYKLAKENNVSFEELCVYA 75 (82)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 4578889999999999999999988644
No 103
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=46.49 E-value=1.3e+02 Score=26.38 Aligned_cols=98 Identities=19% Similarity=0.190 Sum_probs=56.1
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhh---cCCcee
Q 019200 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHA---VHPITA 180 (344)
Q Consensus 104 ~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~---~~~~~~ 180 (344)
.++.+...+-++ .|.++|+++|.+- .|.......+.++.+.+.... .+..+++......++...+ ...++.
T Consensus 10 ~~~~~~k~~i~~-~L~~~Gv~~iEvg---~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~~ 83 (237)
T PF00682_consen 10 AFSTEEKLEIAK-ALDEAGVDYIEVG---FPFASEDDFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAGIDI 83 (237)
T ss_dssp T--HHHHHHHHH-HHHHHTTSEEEEE---HCTSSHHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTTSSE
T ss_pred CcCHHHHHHHHH-HHHHhCCCEEEEc---ccccCHHHHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhccCCE
Confidence 356666555555 6999999999988 333222233455566666665 4445555556666666443 234444
Q ss_pred eeccccccc--c------------chhhhHHHHHHHhCCcE
Q 019200 181 VQMEWSLWT--R------------DIEEEIIPLCRELGIGI 207 (344)
Q Consensus 181 ~q~~~n~~~--~------------~~~~~l~~~~~~~gi~v 207 (344)
+.+..+.-+ . ..-.+.+.++++.|+.+
T Consensus 84 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 84 IRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp EEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred EEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 444333322 1 11157899999999998
No 104
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=46.42 E-value=1.4e+02 Score=28.67 Aligned_cols=70 Identities=7% Similarity=-0.052 Sum_probs=53.3
Q ss_pred HHHHHHHHHcCccc-EEecCCCCHHHHHHHhhcCCceeeecccccccc-chhhhHHHHHHHhCCcEEecccC
Q 019200 144 IGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTR-DIEEEIIPLCRELGIGIVPYSPL 213 (344)
Q Consensus 144 ~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~~~gi~v~a~~pl 213 (344)
++.+.+|++.-.+. ..|=|-++...++.+++...++++|+...-.-- ..-..+..+|+.+|+.++.++..
T Consensus 246 ~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~a~dii~~d~~~~GGit~~~kia~lA~~~gi~~~~h~~~ 317 (404)
T PRK15072 246 QEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQLIDYIRTTVTHAGGITHLRRIADFAALYQVRTGSHGPT 317 (404)
T ss_pred HHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcCCCCEEecCccccCcHHHHHHHHHHHHHcCCceeeccCc
Confidence 67788888876665 566667889999999998889999987665421 11257999999999999986543
No 105
>PLN00191 enolase
Probab=46.39 E-value=1.7e+02 Score=28.89 Aligned_cols=97 Identities=10% Similarity=0.098 Sum_probs=67.7
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecC--CCCHHHHHHHhhcCCceeee
Q 019200 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS--EASPGTIRRAHAVHPITAVQ 182 (344)
Q Consensus 105 ~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs--~~~~~~l~~~~~~~~~~~~q 182 (344)
.+++.+.+-++..+++ .++.++-.|-.. +-|+.+.+|.++.++.-+|=- ..+++.++++++....++++
T Consensus 295 ~s~~e~i~~~~~L~~~-----y~I~~IEDPl~~----~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~ 365 (457)
T PLN00191 295 KSGDELIDLYKEFVSD-----YPIVSIEDPFDQ----DDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNALL 365 (457)
T ss_pred cCHHHHHHHHHHHhhc-----CCcEEEECCCCc----ccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCCEEE
Confidence 4666665555554433 356777776543 346677778888888766622 24688999999988889999
Q ss_pred ccccccccc-hhhhHHHHHHHhCCcEEec
Q 019200 183 MEWSLWTRD-IEEEIIPLCRELGIGIVPY 210 (344)
Q Consensus 183 ~~~n~~~~~-~~~~l~~~~~~~gi~v~a~ 210 (344)
+..|-.-.= ...++.++|+.+|+.++..
T Consensus 366 iKl~qiGGITea~~~a~lA~~~G~~~~is 394 (457)
T PLN00191 366 LKVNQIGTVTESIEAVKMSKAAGWGVMTS 394 (457)
T ss_pred ecccccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 988764321 2267999999999999864
No 106
>PLN02363 phosphoribosylanthranilate isomerase
Probab=45.67 E-value=75 Score=28.61 Aligned_cols=75 Identities=19% Similarity=0.277 Sum_probs=49.2
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecC-CCCHHHHHHHhhcCCceeeecc
Q 019200 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPGTIRRAHAVHPITAVQME 184 (344)
Q Consensus 106 ~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~ 184 (344)
+.+.++.+ .++|.|++=+++..........+.. ..+........++.+||. +-+++.+.+.++...++++|+.
T Consensus 56 ~~eda~~a-----~~~GaD~iGfIf~~~SpR~Vs~e~a-~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~~~ld~VQLH 129 (256)
T PLN02363 56 SARDAAMA-----VEAGADFIGMILWPKSKRSISLSVA-KEISQVAREGGAKPVGVFVDDDANTILRAADSSDLELVQLH 129 (256)
T ss_pred cHHHHHHH-----HHcCCCEEEEecCCCCCCcCCHHHH-HHHHHhccccCccEEEEEeCCCHHHHHHHHHhcCCCEEEEC
Confidence 45555444 4589999998755443344444443 333333333246789995 7788899999988899999996
Q ss_pred cc
Q 019200 185 WS 186 (344)
Q Consensus 185 ~n 186 (344)
-+
T Consensus 130 G~ 131 (256)
T PLN02363 130 GN 131 (256)
T ss_pred CC
Confidence 53
No 107
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=45.53 E-value=29 Score=23.69 Aligned_cols=22 Identities=27% Similarity=0.441 Sum_probs=19.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHHH
Q 019200 253 RIGNLAKKYNCTSAQLALAWVL 274 (344)
Q Consensus 253 ~l~~la~~~~~s~~qlal~~~l 274 (344)
.+-+||+++|+++.++|..|+.
T Consensus 15 ~FveIAr~~~i~a~e~a~~w~~ 36 (63)
T PF11242_consen 15 SFVEIARKIGITAKEVAKAWAE 36 (63)
T ss_pred cHHHHHHHhCCCHHHHHHHHHH
Confidence 3668999999999999999985
No 108
>PRK00208 thiG thiazole synthase; Reviewed
Probab=45.45 E-value=2.3e+02 Score=25.43 Aligned_cols=106 Identities=14% Similarity=0.049 Sum_probs=71.2
Q ss_pred cCCChHHHHHHHHHHHhhcCCCceeEEEeccCCCC-CCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhcCCceee
Q 019200 103 VKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS-VPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAV 181 (344)
Q Consensus 103 ~~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~-~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~ 181 (344)
...+.+.-.+-.+-..+-++++.|=|=.+.++... .+..+++++.++|+++|.+-. =+++.++...+++.+..+ +++
T Consensus 71 G~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vl-pyc~~d~~~ak~l~~~G~-~~v 148 (250)
T PRK00208 71 GCRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVL-PYCTDDPVLAKRLEEAGC-AAV 148 (250)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHcCC-CEe
Confidence 35778888888888889899999888888776643 467899999999999998543 256667777777766533 444
Q ss_pred eccccccccc--h-hhhHHHHHHH-hCCcEEec
Q 019200 182 QMEWSLWTRD--I-EEEIIPLCRE-LGIGIVPY 210 (344)
Q Consensus 182 q~~~n~~~~~--~-~~~l~~~~~~-~gi~v~a~ 210 (344)
+..-.+.-.+ . ..++++...+ .++.|++-
T Consensus 149 mPlg~pIGsg~gi~~~~~i~~i~e~~~vpVIve 181 (250)
T PRK00208 149 MPLGAPIGSGLGLLNPYNLRIIIEQADVPVIVD 181 (250)
T ss_pred CCCCcCCCCCCCCCCHHHHHHHHHhcCCeEEEe
Confidence 3322222211 1 1345665555 47888874
No 109
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=45.07 E-value=80 Score=30.03 Aligned_cols=90 Identities=11% Similarity=0.082 Sum_probs=47.5
Q ss_pred HHHHHHHHHHcCcccEEecCCCCHHHHHHHhhcCCceeeeccccccccchhhhHHHHHHHhCCcEEecccCCcccCCCCC
Q 019200 143 TIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKA 222 (344)
Q Consensus 143 ~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G~L~~~~ 222 (344)
-.+++.+|.+.|.+.+|-.-- -++.-..+....+-.--.--|.......-+.+++.|+++||.|+..+ +|. .
T Consensus 11 ~~~a~~~l~~~g~~d~l~~d~-LaE~tma~~~~~~~~~p~~gY~~~~~~~L~~~L~~~~~~gIkvI~Na---Gg~-n--- 82 (362)
T PF07287_consen 11 RPDAAVRLARGGDVDYLVGDY-LAERTMAILARAKRKDPTKGYAPDFVRDLRPLLPAAAEKGIKVITNA---GGL-N--- 82 (362)
T ss_pred cHHHHHHHHhcCCCCEEEEec-HHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhCCCCEEEeC---CCC-C---
Confidence 345666666777777775532 12111111110000000112333322223679999999999999863 221 1
Q ss_pred CCCCCCCCcccccccCccccchhhhHHHHHHHHHHHHHcCCC
Q 019200 223 VVENVPADSFLHFLPRFKGENLDRNKSIYFRIGNLAKKYNCT 264 (344)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s 264 (344)
.....+.+++++++.|.+
T Consensus 83 ------------------------p~~~a~~v~eia~e~Gl~ 100 (362)
T PF07287_consen 83 ------------------------PAGCADIVREIARELGLS 100 (362)
T ss_pred ------------------------HHHHHHHHHHHHHhcCCC
Confidence 123567888888888765
No 110
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=45.07 E-value=1.9e+02 Score=27.62 Aligned_cols=91 Identities=12% Similarity=0.209 Sum_probs=59.9
Q ss_pred EEEeccCCCC-----------CCHHHHHHHHHHHHHcCc----ccEEecC--CCCHHHHHHHhhc---C------Cceee
Q 019200 128 LYYQHRVDTS-----------VPIEETIGEMKKLVEEGK----IKYIGLS--EASPGTIRRAHAV---H------PITAV 181 (344)
Q Consensus 128 l~~lH~~~~~-----------~~~~~~~~~L~~l~~~G~----ir~iGvs--~~~~~~l~~~~~~---~------~~~~~ 181 (344)
.+.||.|++. -+++++++++.+..++.. +-|+=+. |.+.++.+++.+. . +..++
T Consensus 231 AiSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VN 310 (371)
T PRK14461 231 AISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVN 310 (371)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEE
Confidence 4789999653 357889999988865433 2233232 5566666555443 4 56889
Q ss_pred eccccccccc----h-h---hhHHHHHHHhCCcEEecccCCcccC
Q 019200 182 QMEWSLWTRD----I-E---EEIIPLCRELGIGIVPYSPLGRGFF 218 (344)
Q Consensus 182 q~~~n~~~~~----~-~---~~l~~~~~~~gi~v~a~~pl~~G~L 218 (344)
-++||+.... + . ....+..+++||.+......+..+.
T Consensus 311 LIp~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~DI~ 355 (371)
T PRK14461 311 LIPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGVEIA 355 (371)
T ss_pred EecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCcChh
Confidence 9999996431 1 1 3466667789999999888765443
No 111
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=44.55 E-value=1.3e+02 Score=27.46 Aligned_cols=114 Identities=11% Similarity=0.064 Sum_probs=68.0
Q ss_pred HHHHHHcCcccEEecCCCCHHHHHHHhhc--CCceeeeccccccccc---hhhhHHHHHHHhCCcEEecccCCcccCCCC
Q 019200 147 MKKLVEEGKIKYIGLSEASPGTIRRAHAV--HPITAVQMEWSLWTRD---IEEEIIPLCRELGIGIVPYSPLGRGFFGGK 221 (344)
Q Consensus 147 L~~l~~~G~ir~iGvs~~~~~~l~~~~~~--~~~~~~q~~~n~~~~~---~~~~l~~~~~~~gi~v~a~~pl~~G~L~~~ 221 (344)
++.|.-..++-.+--++.+.+.+.++.+. ..+.-+.+ +|-++.. -...+.+++++-++-++.-+.-+..
T Consensus 150 ~~~l~~~~kv~~vsQTT~~~~~~~~iv~~l~~~~~~~~v-~~TIC~aT~~RQ~a~~~La~~vD~miVVGg~~SsN----- 223 (281)
T PRK12360 150 VENIPFLDKACVVAQTTIIPELWEDILNVIKLKSKELVF-FNTICSATKKRQESAKELSKEVDVMIVIGGKHSSN----- 223 (281)
T ss_pred HhhCccccCEEEEECCCCcHHHHHHHHHHHHHhCccccc-CCCcchhhhhHHHHHHHHHHhCCEEEEecCCCCcc-----
Confidence 33333335555666667777776665543 11111222 2322221 1245888888877777663322210
Q ss_pred CCCCCCCCCcccccccCccccchhhhHHHHHHHHHHHHHcCC------CHHHHHHHHHHhCCCCeEeecCCCCHHHHHHH
Q 019200 222 AVVENVPADSFLHFLPRFKGENLDRNKSIYFRIGNLAKKYNC------TSAQLALAWVLGQGDDVVPIPGTTKMKNLDDN 295 (344)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~------s~~qlal~~~l~~~~v~~vi~G~~~~~~l~~n 295 (344)
...|.++|++.+. ++.++-..|..... ...+..|+|+|+.+-+.
T Consensus 224 -----------------------------T~rL~eia~~~~~~t~~Ie~~~el~~~~~~~~~-~VGitaGASTP~~li~e 273 (281)
T PRK12360 224 -----------------------------TQKLVKICEKNCPNTFHIETADELDLEMLKDYK-IIGITAGASTPDWIIEE 273 (281)
T ss_pred -----------------------------HHHHHHHHHHHCCCEEEECChHHCCHHHhCCCC-EEEEEccCCCCHHHHHH
Confidence 1578888888774 68899899997764 35788999999976554
Q ss_pred H
Q 019200 296 I 296 (344)
Q Consensus 296 l 296 (344)
+
T Consensus 274 V 274 (281)
T PRK12360 274 V 274 (281)
T ss_pred H
Confidence 4
No 112
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=44.37 E-value=67 Score=31.57 Aligned_cols=66 Identities=17% Similarity=0.183 Sum_probs=45.9
Q ss_pred HhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecC-CCCHHHHHHHhhcCCceeeeccccc
Q 019200 118 LKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPGTIRRAHAVHPITAVQMEWSL 187 (344)
Q Consensus 118 L~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~n~ 187 (344)
...+|.|++=+++........+.+..-+....+. ++.+||- |-+++.+.++++...++++|++-+.
T Consensus 273 a~~~GaD~lGfIf~~~SpR~V~~~~a~~i~~~l~----v~~VgVfv~~~~~~i~~i~~~~~lD~vQLHG~e 339 (454)
T PRK09427 273 AYDAGAVYGGLIFVEKSPRYVSLEQAQEIIAAAP----LRYVGVFRNADIEDIVDIAKQLSLAAVQLHGDE 339 (454)
T ss_pred HHhCCCCEEeeEeCCCCCCCCCHHHHHHHHHhCC----CCEEEEEeCCCHHHHHHHHHHcCCCEEEeCCCC
Confidence 4558999988875444444454444333333332 8899997 6788899998888899999997754
No 113
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=44.20 E-value=1.3e+02 Score=28.33 Aligned_cols=69 Identities=10% Similarity=0.096 Sum_probs=50.7
Q ss_pred HHHHHHHHHHcCccc-EEecCCCCHHHHHHHhhcCCceeeecccccccc-chhhhHHHHHHHhCCcEEecc
Q 019200 143 TIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTR-DIEEEIIPLCRELGIGIVPYS 211 (344)
Q Consensus 143 ~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~~~gi~v~a~~ 211 (344)
-++.+.+|+++.-+. +.|=|.++.+.+..+++...++++|+....+-- ..-..+.++|+++||.++.++
T Consensus 215 d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~v~~d~~~~GGit~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 215 NVEALAEIAARTTIPIATGERLFSRWDFKELLEDGAVDIIQPDISHAGGITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred CHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCcEeccC
Confidence 367788888776555 445566788888888887788999998655421 112679999999999998654
No 114
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=44.18 E-value=2.9e+02 Score=26.37 Aligned_cols=151 Identities=14% Similarity=0.121 Sum_probs=74.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEecccCcCCCchHHHHHHHHhc-----CCCCCeEEEecccccCCCCcccccCCChHHHHHH
Q 019200 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ-----LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSC 113 (344)
Q Consensus 39 ~~~~~~~~l~~Al~~Gin~~DtA~~Yg~g~sE~~lG~~l~~-----~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~ 113 (344)
...+..+.|+.++++|+- +..|+...--..+-.|.++ .+.+.++++.- +...
T Consensus 39 ~pp~i~~Al~~rvdhGvf----GY~~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~-------------------VVpg 95 (388)
T COG1168 39 TPPEIIEALRERVDHGVF----GYPYGSDELYAAIAHWFKQRHQWEIKPEWIVFVPG-------------------VVPG 95 (388)
T ss_pred CCHHHHHHHHHHHhcCCC----CCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEcCc-------------------chHh
Confidence 345688899999999973 3234421112334445543 13333333322 3344
Q ss_pred HHHHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCc-ccEE----ecCCC--CHHHHHHHhhcCC--ceeeecc
Q 019200 114 CEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYI----GLSEA--SPGTIRRAHAVHP--ITAVQME 184 (344)
Q Consensus 114 v~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~-ir~i----Gvs~~--~~~~l~~~~~~~~--~~~~q~~ 184 (344)
+...++.| |+.=|-+.++.|-.. ++-. ..+..|+ +-.. +=..| +.+.++++..... .-+.-.+
T Consensus 96 i~~~I~~~-T~~gd~Vvi~tPvY~-PF~~------~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnP 167 (388)
T COG1168 96 ISLAIRAL-TKPGDGVVIQTPVYP-PFYN------AIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNP 167 (388)
T ss_pred HHHHHHHh-CcCCCeeEecCCCch-HHHH------HHhhcCcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCC
Confidence 45555555 355588888887432 1111 1111111 0000 00112 4556665555443 2222234
Q ss_pred ccccccc----hhhhHHHHHHHhCCcEEecccCCcccCCC
Q 019200 185 WSLWTRD----IEEEIIPLCRELGIGIVPYSPLGRGFFGG 220 (344)
Q Consensus 185 ~n~~~~~----~~~~l~~~~~~~gi~v~a~~pl~~G~L~~ 220 (344)
.|+.-+- ....+.+.|++|||.||+=..-+-=.|.|
T Consensus 168 HNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g 207 (388)
T COG1168 168 HNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGG 207 (388)
T ss_pred CCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccC
Confidence 5554332 22679999999999999755555434444
No 115
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=43.97 E-value=71 Score=28.05 Aligned_cols=101 Identities=20% Similarity=0.281 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHHHHHcCcccEEecC----CCCHHHHHHHhhcCCceeeeccccccccchhhhHHHHHHHhCCcEEecccC
Q 019200 138 VPIEETIGEMKKLVEEGKIKYIGLS----EASPGTIRRAHAVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPL 213 (344)
Q Consensus 138 ~~~~~~~~~L~~l~~~G~ir~iGvs----~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~pl 213 (344)
...+++.++|..|+ +..|... .+-...++.+++...+.++-- ++.+++ .+++...-+.|..++.-++-
T Consensus 73 ~eve~L~~~l~~l~----~d~iv~GaI~s~yqk~rve~lc~~lGl~~~~P---LWg~d~-~ell~e~~~~Gf~~~Iv~Vs 144 (223)
T COG2102 73 REVEELKEALRRLK----VDGIVAGAIASEYQKERVERLCEELGLKVYAP---LWGRDP-EELLEEMVEAGFEAIIVAVS 144 (223)
T ss_pred hhHHHHHHHHHhCc----ccEEEEchhhhHHHHHHHHHHHHHhCCEEeec---ccCCCH-HHHHHHHHHcCCeEEEEEEe
Confidence 34667777888777 5555443 344455666666654443222 334444 56777777788877777777
Q ss_pred CcccCCCCCCCCCCCCCcccccccCccccchhhhHHHHHHHHHHHHHcCCCHH
Q 019200 214 GRGFFGGKAVVENVPADSFLHFLPRFKGENLDRNKSIYFRIGNLAKKYNCTSA 266 (344)
Q Consensus 214 ~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~ 266 (344)
+.|+-. . +.+. .-..+.++.+..++++||+.++
T Consensus 145 a~gL~~-----------~-------~lGr--~i~~~~~e~l~~l~~~ygi~~~ 177 (223)
T COG2102 145 AEGLDE-----------S-------WLGR--RIDREFLEELKSLNRRYGIHPA 177 (223)
T ss_pred ccCCCh-----------H-------HhCC--ccCHHHHHHHHHHHHhcCCCcc
Confidence 766521 0 0000 0113556889999999998764
No 116
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=43.51 E-value=2.8e+02 Score=25.85 Aligned_cols=109 Identities=14% Similarity=0.101 Sum_probs=58.0
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEeccCCCCCCH-HHHHHHHHHHHHcCcccEEecCC----CCHHHH----HHHhhcC
Q 019200 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPI-EETIGEMKKLVEEGKIKYIGLSE----ASPGTI----RRAHAVH 176 (344)
Q Consensus 106 ~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~~~-~~~~~~L~~l~~~G~ir~iGvs~----~~~~~l----~~~~~~~ 176 (344)
+.+.+.+.++..-+..++. ++++-- =++.... ..+.+.++.+..-..++.+|+.+ ..+..+ .+.+...
T Consensus 126 ~~~~~~~~i~~i~~~~~i~--~VvltG-GEPL~~~d~~L~~ll~~l~~i~~~~~iri~tr~~~~~p~rit~el~~~L~~~ 202 (321)
T TIGR03821 126 NKAQWKEALEYIAQHPEIN--EVILSG-GDPLMAKDHRLDWLLNLLEQIPHLKRLRIHTRLPVVIPDRITSGLCDLLANS 202 (321)
T ss_pred CHHHHHHHHHHHHhcCCCC--EEEEeC-cccccCCchHHHHHHHHHHhCCCCcEEEEecCcceeeHHHhhHHHHHHHHhc
Confidence 3444544444433333332 344433 3443222 23556667777777788888764 333322 1222223
Q ss_pred Cceee-ecccccccc--chhhhHHHHHHHhCCcEEecccCCccc
Q 019200 177 PITAV-QMEWSLWTR--DIEEEIIPLCRELGIGIVPYSPLGRGF 217 (344)
Q Consensus 177 ~~~~~-q~~~n~~~~--~~~~~l~~~~~~~gi~v~a~~pl~~G~ 217 (344)
.+..+ ++.+|=..- ....+.++.+++.||.+...+++..|+
T Consensus 203 ~~~~~~~~h~dh~~Ei~d~~~~ai~~L~~~Gi~v~~qtvllkgi 246 (321)
T TIGR03821 203 RLQTVLVVHINHANEIDAEVADALAKLRNAGITLLNQSVLLRGV 246 (321)
T ss_pred CCcEEEEeeCCChHhCcHHHHHHHHHHHHcCCEEEecceeeCCC
Confidence 33333 446553211 112567888899999999999998775
No 117
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=43.37 E-value=2.6e+02 Score=25.52 Aligned_cols=153 Identities=14% Similarity=0.107 Sum_probs=89.6
Q ss_pred CHHHHHHHHHHHHHcC-CCEEec---ccCc-----CCCchHHHHHHHHhcCCC-CCeEEEecccccCCCCcccccCCChH
Q 019200 39 SEEDGISMIKHAFSKG-ITFFDT---ADVY-----GQNANEVLLGKALKQLPR-EKIQVATKFGIAGIGVAGVIVKGAPD 108 (344)
Q Consensus 39 ~~~~~~~~l~~Al~~G-in~~Dt---A~~Y-----g~g~sE~~lG~~l~~~~R-~~~~I~tK~~~~~~~~~~~~~~~~~~ 108 (344)
+.++..+..+.+-+.| +..||- +++. ..+...+.+-+.++..++ -++-|..|+.+.. +
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~------------~ 169 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNV------------T 169 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCc------------h
Confidence 6678888888888888 999985 2221 122356666666665322 2677888986321 2
Q ss_pred HHHHHHHHHHhhcCCCceeEEE-eccC--CCCC--C--------------HHHHHHHHHHHHHcCcccEEecCCC-CHHH
Q 019200 109 YVRSCCEASLKRLDVDYIDLYY-QHRV--DTSV--P--------------IEETIGEMKKLVEEGKIKYIGLSEA-SPGT 168 (344)
Q Consensus 109 ~i~~~v~~SL~rLg~d~iDl~~-lH~~--~~~~--~--------------~~~~~~~L~~l~~~G~ir~iGvs~~-~~~~ 168 (344)
.+.+ +-+.|+..|.|.|++.- ++.. +... + ..-.++.+.++++.=.+--||+... +++.
T Consensus 170 ~~~~-~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~d 248 (301)
T PRK07259 170 DIVE-IAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAED 248 (301)
T ss_pred hHHH-HHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHH
Confidence 2322 33457788887776531 1111 0000 0 0124666777777656888998885 7888
Q ss_pred HHHHhhcCCceeeeccccccc-cc----hhhhHHHHHHHhCC
Q 019200 169 IRRAHAVHPITAVQMEWSLWT-RD----IEEEIIPLCRELGI 205 (344)
Q Consensus 169 l~~~~~~~~~~~~q~~~n~~~-~~----~~~~l~~~~~~~gi 205 (344)
+.+++... .+.+|+-=-++. +. ..+++-.++.++|.
T Consensus 249 a~~~l~aG-Ad~V~igr~ll~~P~~~~~i~~~l~~~~~~~g~ 289 (301)
T PRK07259 249 AIEFIMAG-ASAVQVGTANFYDPYAFPKIIEGLEAYLDKYGI 289 (301)
T ss_pred HHHHHHcC-CCceeEcHHHhcCcHHHHHHHHHHHHHHHHcCC
Confidence 88888755 577877332222 21 12456666676664
No 118
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=42.84 E-value=2.3e+02 Score=24.69 Aligned_cols=72 Identities=15% Similarity=0.206 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEecccCcC-CCchH---HHHHHHHhcCCCCCeEEEecccccCCCCcccccCCChHHHHHHH
Q 019200 39 SEEDGISMIKHAFSKGITFFDTADVYG-QNANE---VLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCC 114 (344)
Q Consensus 39 ~~~~~~~~l~~Al~~Gin~~DtA~~Yg-~g~sE---~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v 114 (344)
++++...+.+.|.+.|..|+=|+..|+ .|.+. +.+.+.++ +. +-.|..-. -.+.+...+-+
T Consensus 130 ~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~----~~--v~IKaaGG---------irt~~~a~~~i 194 (211)
T TIGR00126 130 TDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTVG----DT--IGVKASGG---------VRTAEDAIAMI 194 (211)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhc----cC--CeEEEeCC---------CCCHHHHHHHH
Confidence 557788999999999999999999887 34333 33444443 22 23333211 13778888889
Q ss_pred HHHHhhcCCCc
Q 019200 115 EASLKRLDVDY 125 (344)
Q Consensus 115 ~~SL~rLg~d~ 125 (344)
+.--.|+|++.
T Consensus 195 ~aGa~riGts~ 205 (211)
T TIGR00126 195 EAGASRIGASA 205 (211)
T ss_pred HHhhHHhCcch
Confidence 99999999875
No 119
>PRK06424 transcription factor; Provisional
Probab=42.73 E-value=78 Score=25.79 Aligned_cols=80 Identities=13% Similarity=0.023 Sum_probs=41.2
Q ss_pred hhHHHHHHHhCCcEEec---ccCCc--ccCCCCCC--CCCCCCCcccccccCccccchhhhHHHHHHHHHHHHHcCCCHH
Q 019200 194 EEIIPLCRELGIGIVPY---SPLGR--GFFGGKAV--VENVPADSFLHFLPRFKGENLDRNKSIYFRIGNLAKKYNCTSA 266 (344)
Q Consensus 194 ~~l~~~~~~~gi~v~a~---~pl~~--G~L~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~ 266 (344)
..+-+.|.+.|..|..+ +|... ..-..... .........++..+.| +...+......+.++.+..+.|+|..
T Consensus 23 l~vC~~Ca~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~g~~Ir~lRe~~GLSQ~ 101 (144)
T PRK06424 23 LNVCDDCAKFGTPVIEHNKFKEVKEDIKVKLPEKKIIVPTYKKAYKKYKKKAS-DEDLDIVEDYAELVKNARERLSMSQA 101 (144)
T ss_pred eehhHHHHHcCCcccccCCCCcccccccccCccccccccccccCCCCccCccc-HHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 56889999999999998 55542 11100000 0000000000111111 11112234455677888888999999
Q ss_pred HHHHHHHH
Q 019200 267 QLALAWVL 274 (344)
Q Consensus 267 qlal~~~l 274 (344)
+||-+--.
T Consensus 102 eLA~~iGv 109 (144)
T PRK06424 102 DLAAKIFE 109 (144)
T ss_pred HHHHHhCC
Confidence 98865543
No 120
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=42.41 E-value=1.5e+02 Score=28.41 Aligned_cols=61 Identities=13% Similarity=0.040 Sum_probs=38.6
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEecc-CCCC-----------C-CHH---HHH-HHHHHHHHcCcccEEecCCCCH
Q 019200 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHR-VDTS-----------V-PIE---ETI-GEMKKLVEEGKIKYIGLSEASP 166 (344)
Q Consensus 104 ~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~-~~~~-----------~-~~~---~~~-~~L~~l~~~G~ir~iGvs~~~~ 166 (344)
.-+.+.+++.++..++ |+.++|.+|.+.- |... . +.+ +.+ .+.+.|.+.|.. .+++|||..
T Consensus 173 gqt~e~~~~~l~~~~~-l~p~his~y~L~i~~gT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~-~yeis~fa~ 250 (390)
T PRK06582 173 GQTLKDWQEELKQAMQ-LATSHISLYQLTIEKGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLESKKYF-RYEISNYAK 250 (390)
T ss_pred CCCHHHHHHHHHHHHh-cCCCEEEEecCEEccCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCc-eeeceeeeC
Confidence 3578889999998886 8999999998863 3110 0 111 222 334556666764 468888753
No 121
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=42.11 E-value=1.9e+02 Score=25.37 Aligned_cols=81 Identities=12% Similarity=0.221 Sum_probs=52.3
Q ss_pred CCHHHHHHHhhcCCceeee----ccccccccchh---hhHHHHHHHhCCcEEecccCCcccCCCCCCCCCCCCCcccccc
Q 019200 164 ASPGTIRRAHAVHPITAVQ----MEWSLWTRDIE---EEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSFLHFL 236 (344)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~q----~~~n~~~~~~~---~~l~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~ 236 (344)
.++.+++.+.+...+.++- .+||.++.... +++.++++.-|-.-+..-|+..|-..+. .
T Consensus 49 ~p~a~vka~Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd~s~~~~----~---------- 114 (272)
T COG4130 49 TPAAEVKALAEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLNDGSWPGT----A---------- 114 (272)
T ss_pred CCHHHHHHHHHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccCCCCCCc----c----------
Confidence 3566666666665544332 26777765432 6799999999988888889987543221 0
Q ss_pred cCccccchhhhHHHHHHHHHHHHHcCC
Q 019200 237 PRFKGENLDRNKSIYFRIGNLAKKYNC 263 (344)
Q Consensus 237 ~~~~~~~~~~~~~~~~~l~~la~~~~~ 263 (344)
.+.......+.+|+.+-.++|+
T Consensus 115 -----vr~~~lv~AlkaLkpil~~~gi 136 (272)
T COG4130 115 -----VRREDLVEALKALKPILDEYGI 136 (272)
T ss_pred -----cchHHHHHHHHHhhHHHHHhCc
Confidence 1123455677788888888876
No 122
>PRK14017 galactonate dehydratase; Provisional
Probab=41.79 E-value=1.3e+02 Score=28.60 Aligned_cols=70 Identities=14% Similarity=0.167 Sum_probs=53.2
Q ss_pred HHHHHHHHHcCccc-EEecCCCCHHHHHHHhhcCCceeeecccccccc-chhhhHHHHHHHhCCcEEecccC
Q 019200 144 IGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTR-DIEEEIIPLCRELGIGIVPYSPL 213 (344)
Q Consensus 144 ~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~~~gi~v~a~~pl 213 (344)
++.+.+|.++..+. ..|=|-++...+..+++...++++|+..+.+-- ..-..+.+.|+.+||.++.++..
T Consensus 217 ~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~ 288 (382)
T PRK14017 217 AEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCPL 288 (382)
T ss_pred HHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHHcCCeEeecCCC
Confidence 56788888877665 555567888999999988888999998766431 11267999999999999987543
No 123
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=41.68 E-value=2.4e+02 Score=27.90 Aligned_cols=127 Identities=17% Similarity=0.203 Sum_probs=69.6
Q ss_pred hHHHHHHHHhcCCCCCeEEEecccccCCCCcccccCCChHHHHHHHHHHHhhcCCCceeEEEeccCC-CCCCHHHHHHHH
Q 019200 69 NEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVD-TSVPIEETIGEM 147 (344)
Q Consensus 69 sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~-~~~~~~~~~~~L 147 (344)
.-+-+|.+|++ +.+++|+-.+... |+....+..-+.+-+++-++..=-+. |.--+ ...+...+...+
T Consensus 340 ~~~dlG~~L~~--~~~l~VsINl~a~---------Dl~s~rli~~~~~~l~~~~v~pqQI~-lElTER~f~D~~~~~~iI 407 (524)
T COG4943 340 VFRDLGDLLRQ--HRDLHVSINLSAS---------DLASPRLIDRLNRKLAQYQVRPQQIA-LELTERTFADPKKMTPII 407 (524)
T ss_pred HHHHhHHHHHh--CcceEEEEeeeeh---------hhcCchHHHHHHHHHHhcCcChHHhe-eehhhhhhcCchhhhHHH
Confidence 34567788874 5677887776432 35556677777777777765321111 11001 112334567789
Q ss_pred HHHHHcCcccEEecCCCCH--HHHHHHhhcCCceeeec--------cccccccchhhhHHHHHHHhCCcEEec
Q 019200 148 KKLVEEGKIKYIGLSEASP--GTIRRAHAVHPITAVQM--------EWSLWTRDIEEEIIPLCRELGIGIVPY 210 (344)
Q Consensus 148 ~~l~~~G~ir~iGvs~~~~--~~l~~~~~~~~~~~~q~--------~~n~~~~~~~~~l~~~~~~~gi~v~a~ 210 (344)
+.+++.|. .|-+-.|.. ..|..+.+. ++|++-+ .++.........+++.++.+|+.+++=
T Consensus 408 ~r~ReaG~--~IyIDDFGTGYSnL~YLq~L-~VDaLKIDKsFvdtlg~~~a~~~I~~hII~MAk~L~L~iVaE 477 (524)
T COG4943 408 LRLREAGH--EIYIDDFGTGYSNLHYLQSL-PVDALKIDKSFVDTLGTDSASHLIAPHIIEMAKSLGLKIVAE 477 (524)
T ss_pred HHHHhcCC--eEEEccCcCcchhHHHHhhC-CccceeccHHHHHhhccCcccchhHHHHHHHHHHcCCcEEee
Confidence 99999998 444433321 223222221 1222222 233333333467999999999999874
No 124
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=41.39 E-value=1.7e+02 Score=27.83 Aligned_cols=60 Identities=13% Similarity=0.022 Sum_probs=36.8
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEecc-CCCC------------CCHH---HH-HHHHHHHHHcCcccEEecCCCC
Q 019200 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHR-VDTS------------VPIE---ET-IGEMKKLVEEGKIKYIGLSEAS 165 (344)
Q Consensus 104 ~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~-~~~~------------~~~~---~~-~~~L~~l~~~G~ir~iGvs~~~ 165 (344)
.-+.+.+++.++. +.+|+.+++.++.+.- |... .+.+ +. -.+++.|.+.|. ..+++++|.
T Consensus 163 gqt~~~~~~~l~~-~~~l~~~~i~~y~l~~~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy-~~~~~~~fa 239 (377)
T PRK08599 163 GQTIEDFKESLAK-ALALDIPHYSAYSLILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEMEAHGF-HQYEISNFA 239 (377)
T ss_pred CCCHHHHHHHHHH-HHccCCCEEeeeceeecCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCC-cEeeeeeee
Confidence 3578888888875 4669999998886542 2100 0111 12 235666777775 457888875
No 125
>PRK00077 eno enolase; Provisional
Probab=40.94 E-value=2.5e+02 Score=27.29 Aligned_cols=96 Identities=9% Similarity=0.033 Sum_probs=64.9
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcC--cccEEecCC--CCHHHHHHHhhcCCcee
Q 019200 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG--KIKYIGLSE--ASPGTIRRAHAVHPITA 180 (344)
Q Consensus 105 ~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G--~ir~iGvs~--~~~~~l~~~~~~~~~~~ 180 (344)
++++...+.+.+.++.+ +++++-.|-+.. -|+.+.+|.++- ++.-+|=-. .+++.++++++....++
T Consensus 261 ~s~~e~~~~~~~l~e~y-----~i~~iEdPl~~~----D~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~~a~d~ 331 (425)
T PRK00077 261 LTSEEMIDYLAELVDKY-----PIVSIEDGLDEN----DWEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEKGAANS 331 (425)
T ss_pred CCHHHHHHHHHHHHhhC-----CcEEEEcCCCCc----cHHHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHhCCCCE
Confidence 56666666666666554 577777775443 355666666653 455444332 36899999999888899
Q ss_pred eeccccccccc-hhhhHHHHHHHhCCcEEe
Q 019200 181 VQMEWSLWTRD-IEEEIIPLCRELGIGIVP 209 (344)
Q Consensus 181 ~q~~~n~~~~~-~~~~l~~~~~~~gi~v~a 209 (344)
+|+..|-+-.= ...++..+|+.+|+.++.
T Consensus 332 v~ik~~~~GGitea~~ia~lA~~~gi~~~v 361 (425)
T PRK00077 332 ILIKVNQIGTLTETLDAIELAKRAGYTAVV 361 (425)
T ss_pred EEeCccccCCHHHHHHHHHHHHHcCCeEEE
Confidence 99987765321 126799999999998765
No 126
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=40.74 E-value=3.5e+02 Score=26.20 Aligned_cols=108 Identities=17% Similarity=0.134 Sum_probs=57.7
Q ss_pred CcCCCchHHHHHHHHhc----CCCCCeEEEecccccCCCCcccccCCChHHHHHHHHHHHhhcC-CCceeEEEeccCCCC
Q 019200 63 VYGQNANEVLLGKALKQ----LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLD-VDYIDLYYQHRVDTS 137 (344)
Q Consensus 63 ~Yg~g~sE~~lG~~l~~----~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~SL~rLg-~d~iDl~~lH~~~~~ 137 (344)
.|| .|+.|-+++++ .+.+-++|.|-+.... --+.++.-+++.-++.. -..+.++.+|.|...
T Consensus 62 V~G---g~~~L~~~i~~~~~~~~p~~I~v~~tC~~~l----------iGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~ 128 (428)
T cd01965 62 VFG---GEDNLIEALKNLLSRYKPDVIGVLTTCLTET----------IGDDVAGFIKEFRAEGPEPADFPVVYASTPSFK 128 (428)
T ss_pred eEC---cHHHHHHHHHHHHHhcCCCEEEEECCcchhh----------cCCCHHHHHHHHHhhccCCCCCeEEEeeCCCCC
Confidence 455 36666677765 3444567777764332 11224444443333221 023678888888655
Q ss_pred CC----HHHHHHHHHH-H------HHcCcccEEecCCC---CHHHHHHHhhcCCceeeec
Q 019200 138 VP----IEETIGEMKK-L------VEEGKIKYIGLSEA---SPGTIRRAHAVHPITAVQM 183 (344)
Q Consensus 138 ~~----~~~~~~~L~~-l------~~~G~ir~iGvs~~---~~~~l~~~~~~~~~~~~q~ 183 (344)
.. .+.++++|-+ + ++.++|.-||-++. +.+.++++++...+.++.+
T Consensus 129 g~~~~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~~ 188 (428)
T cd01965 129 GSHETGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPIIL 188 (428)
T ss_pred CcHHHHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEEe
Confidence 32 2334444433 2 23456888876654 3577888777765555543
No 127
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=40.64 E-value=2.7e+02 Score=24.85 Aligned_cols=168 Identities=13% Similarity=0.040 Sum_probs=87.7
Q ss_pred cccccccccCCCCCCCCCCHHHHHHHHHHHHH-cCCCEEecccCcCCCchHHHHHHHHhcCCCCCeEEEecccccCCCCc
Q 019200 21 SKLGYGCMNLSGGYSSPVSEEDGISMIKHAFS-KGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVA 99 (344)
Q Consensus 21 s~lglG~~~~~~~~~~~~~~~~~~~~l~~Al~-~Gin~~DtA~~Yg~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~ 99 (344)
|+|-+||..+.+ .+++..|++ .|-..+=.|----+-.....-..++...+++++.+.-..
T Consensus 9 SRL~lGTgky~s-----------~~~m~~ai~aSg~evvTvalRR~~~~~~~~~~~~~~~i~~~~~~lLPNT-------- 69 (247)
T PF05690_consen 9 SRLILGTGKYPS-----------PEVMREAIEASGAEVVTVALRRVNLGSKPGGDNILDYIDRSGYTLLPNT-------- 69 (247)
T ss_dssp -SEEEE-STSSS-----------HHHHHHHHHHTT-SEEEEECCGSTTTS-TTCHHCCCCTTCCTSEEEEE---------
T ss_pred cceEEecCCCCC-----------HHHHHHHHHHhCCcEEEEEEecccCCCCCCCccHHHHhcccCCEECCcC--------
Confidence 688899876532 556666764 476666554211000000000111222344555433222
Q ss_pred ccccCCChHHHHHHHHHHHhhcCCCceeEEEeccCCCC-CCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhcCCc
Q 019200 100 GVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS-VPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPI 178 (344)
Q Consensus 100 ~~~~~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~-~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 178 (344)
....+.+.-.+..+-..+-++++.|=|=.+.++... -+..+++++-+.|+++|-+-.- .++.++-..+++.+.+ .
T Consensus 70 --aGc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlP-Y~~~D~v~akrL~d~G-c 145 (247)
T PF05690_consen 70 --AGCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLP-YCTDDPVLAKRLEDAG-C 145 (247)
T ss_dssp --TT-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEE-EE-S-HHHHHHHHHTT--
T ss_pred --CCCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEee-cCCCCHHHHHHHHHCC-C
Confidence 234677888888888999999998887777666543 3457999999999999975433 3455666666666643 2
Q ss_pred eeeeccccccccchh----hhHHHHHHHhCCcEEecc
Q 019200 179 TAVQMEWSLWTRDIE----EEIIPLCRELGIGIVPYS 211 (344)
Q Consensus 179 ~~~q~~~n~~~~~~~----~~l~~~~~~~gi~v~a~~ 211 (344)
..++.--++.-.... ..+--.+++.+|.||.-.
T Consensus 146 aavMPlgsPIGSg~Gi~n~~~l~~i~~~~~vPvIvDA 182 (247)
T PF05690_consen 146 AAVMPLGSPIGSGRGIQNPYNLRIIIERADVPVIVDA 182 (247)
T ss_dssp SEBEEBSSSTTT---SSTHHHHHHHHHHGSSSBEEES
T ss_pred CEEEecccccccCcCCCCHHHHHHHHHhcCCcEEEeC
Confidence 344443333322110 234455667799998754
No 128
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=40.60 E-value=2.5e+02 Score=24.60 Aligned_cols=85 Identities=12% Similarity=0.026 Sum_probs=46.6
Q ss_pred HHHhhcCCCceeEEEeccCCCCCCH-HHHHHHHHHHHHcCcccEEecCCC-CHHHHHHHhhcCCceeeeccccccccch-
Q 019200 116 ASLKRLDVDYIDLYYQHRVDTSVPI-EETIGEMKKLVEEGKIKYIGLSEA-SPGTIRRAHAVHPITAVQMEWSLWTRDI- 192 (344)
Q Consensus 116 ~SL~rLg~d~iDl~~lH~~~~~~~~-~~~~~~L~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q~~~n~~~~~~- 192 (344)
+.++.+| +|.+.+|..+..... .--++.+.++++.-.+.-+..... +++.+.++.+...++.+++---+.....
T Consensus 156 ~~l~~~G---~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~~~~ 232 (243)
T cd04731 156 KEVEELG---AGEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFGEYT 232 (243)
T ss_pred HHHHHCC---CCEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcCCCC
Confidence 3456666 555666665432111 113566677776656666666554 6788888877655666665333333221
Q ss_pred hhhHHHHHHHh
Q 019200 193 EEEIIPLCREL 203 (344)
Q Consensus 193 ~~~l~~~~~~~ 203 (344)
..++...|+++
T Consensus 233 ~~~~~~~~~~~ 243 (243)
T cd04731 233 IAELKEYLAER 243 (243)
T ss_pred HHHHHHHHhhC
Confidence 14566666653
No 129
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=40.48 E-value=2.1e+02 Score=27.14 Aligned_cols=28 Identities=14% Similarity=0.129 Sum_probs=21.4
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEec
Q 019200 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQH 132 (344)
Q Consensus 104 ~~~~~~i~~~v~~SL~rLg~d~iDl~~lH 132 (344)
.-+.+.+.+.++..+ +|+.+++.+|.+.
T Consensus 162 gqt~e~~~~~l~~~~-~l~~~~is~y~l~ 189 (374)
T PRK05799 162 NQTLEDWKETLEKVV-ELNPEHISCYSLI 189 (374)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEEeccE
Confidence 357888888888665 5899999988765
No 130
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=40.28 E-value=57 Score=31.71 Aligned_cols=108 Identities=17% Similarity=0.086 Sum_probs=67.4
Q ss_pred CchHHHHHHHHhc---CCCCCeEEEecccccCCCCcc-----cccCCChHHHHHHHHHHHhhcCCCceeEEEeccCCCCC
Q 019200 67 NANEVLLGKALKQ---LPREKIQVATKFGIAGIGVAG-----VIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSV 138 (344)
Q Consensus 67 g~sE~~lG~~l~~---~~R~~~~I~tK~~~~~~~~~~-----~~~~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~ 138 (344)
|--|.++..+-+. ..+-.++++.-+|--....+. ...... ++-.-.+.-.||.+.|+| .-..
T Consensus 148 GTyeT~~~~~r~h~~gdL~Gk~~lTaGLGGMgGAQplA~~ma~~v~i~---vevd~srI~~Rl~t~y~d-------~~a~ 217 (561)
T COG2987 148 GTYETFAEAGRQHFGGDLKGKWVLTAGLGGMGGAQPLAATMAGAVCIA---VEVDESRIDKRLRTGYLD-------EIAE 217 (561)
T ss_pred chHHHHHHHHHHhcCCCccceEEEecCCCcccccchHHHHhcCceEEE---EEeCHHHHHHHHhcchhh-------hhcC
Confidence 3345555544443 246678888887643321110 000000 111123344677889998 3445
Q ss_pred CHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhc-CCcee--eecc
Q 019200 139 PIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV-HPITA--VQME 184 (344)
Q Consensus 139 ~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~--~q~~ 184 (344)
.++|.++..++..++|+-..||+-..-++.+.++++. ..+++ -|..
T Consensus 218 ~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~vtDQTs 266 (561)
T COG2987 218 TLDEALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLVTDQTS 266 (561)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCceeccccc
Confidence 7899999999999999999999999888888888776 33443 3554
No 131
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=40.19 E-value=2.7e+02 Score=24.85 Aligned_cols=158 Identities=17% Similarity=0.148 Sum_probs=80.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEecccC-----------cCCCchHHHHHHHHhcCCCCCeEEEecccccCCCCcccccC
Q 019200 36 SPVSEEDGISMIKHAFSKGITFFDTADV-----------YGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVK 104 (344)
Q Consensus 36 ~~~~~~~~~~~l~~Al~~Gin~~DtA~~-----------Yg~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~ 104 (344)
...+.++..++++...+.||..++.+.. |..-..++.+.+..+..+..++.+..-.+ .
T Consensus 17 ~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~-----------~ 85 (263)
T cd07943 17 HQFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPG-----------I 85 (263)
T ss_pred eecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCC-----------c
Confidence 3457899999999999999999998721 11112445555544433333332222100 0
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecC---CCCHHHHHHHhhc---CCc
Q 019200 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS---EASPGTIRRAHAV---HPI 178 (344)
Q Consensus 105 ~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs---~~~~~~l~~~~~~---~~~ 178 (344)
...+.+ +..++ .|++.+-++.- ........+.++..++.|.--.+.++ .++++.+.++.+. ...
T Consensus 86 ~~~~~i----~~a~~-~g~~~iri~~~-----~s~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~ 155 (263)
T cd07943 86 GTVDDL----KMAAD-LGVDVVRVATH-----CTEADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGA 155 (263)
T ss_pred cCHHHH----HHHHH-cCCCEEEEEec-----hhhHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCC
Confidence 123333 44443 36555554331 11234567778888888875555542 2455554443332 233
Q ss_pred eeeec--cccccccchhhhHHHHHHHh----CCcEEecccCC
Q 019200 179 TAVQM--EWSLWTRDIEEEIIPLCREL----GIGIVPYSPLG 214 (344)
Q Consensus 179 ~~~q~--~~n~~~~~~~~~l~~~~~~~----gi~v~a~~pl~ 214 (344)
+.+.+ .+..+.+..-.+++..++++ -+++.++.-++
T Consensus 156 d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~G 197 (263)
T cd07943 156 DCVYVTDSAGAMLPDDVRERVRALREALDPTPVGFHGHNNLG 197 (263)
T ss_pred CEEEEcCCCCCcCHHHHHHHHHHHHHhCCCceEEEEecCCcc
Confidence 44333 23344443335666666654 23444444444
No 132
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=39.98 E-value=2e+02 Score=24.65 Aligned_cols=100 Identities=16% Similarity=0.194 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhhcCCCceeEEEeccCC--CCCCHHHHHHHHHHHHHcCcccEEecCCCCH--HHHHHHhhcCCceeeec
Q 019200 108 DYVRSCCEASLKRLDVDYIDLYYQHRVD--TSVPIEETIGEMKKLVEEGKIKYIGLSEASP--GTIRRAHAVHPITAVQM 183 (344)
Q Consensus 108 ~~i~~~v~~SL~rLg~d~iDl~~lH~~~--~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~--~~l~~~~~~~~~~~~q~ 183 (344)
..+...+...+++.+... +-+.+--.+ .........+.++.|++.|- .+.+.++.. ..+..+.. .+++.+-+
T Consensus 99 ~~~~~~l~~~l~~~~~~~-~~lvlei~e~~~~~~~~~~~~~i~~l~~~G~--~ialddfg~~~~~~~~l~~-l~~d~iKl 174 (241)
T smart00052 99 PDLVPRVLELLEETGLPP-QRLELEITESVLLDDDESAVATLQRLRELGV--RIALDDFGTGYSSLSYLKR-LPVDLLKI 174 (241)
T ss_pred chHHHHHHHHHHHcCCCH-HHEEEEEeChhhhcChHHHHHHHHHHHHCCC--EEEEeCCCCcHHHHHHHHh-CCCCeEEE
Confidence 345566677777766542 222222222 22233455689999999998 677777643 33333333 45666655
Q ss_pred ccccccc--------chhhhHHHHHHHhCCcEEecc
Q 019200 184 EWSLWTR--------DIEEEIIPLCRELGIGIVPYS 211 (344)
Q Consensus 184 ~~n~~~~--------~~~~~l~~~~~~~gi~v~a~~ 211 (344)
..+++.. ..-+.++..|+..|+.+++-+
T Consensus 175 d~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~g 210 (241)
T smart00052 175 DKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAEG 210 (241)
T ss_pred CHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEec
Confidence 5444322 122568899999999999853
No 133
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=39.98 E-value=1.6e+02 Score=25.07 Aligned_cols=45 Identities=16% Similarity=0.162 Sum_probs=27.8
Q ss_pred HHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecCCCCHHH
Q 019200 117 SLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGT 168 (344)
Q Consensus 117 SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~ 168 (344)
....++ +|.+|||..++ .+.++.+.+......++.+|++......
T Consensus 68 ia~~~~---~d~Vqlhg~e~----~~~~~~l~~~~~~~~i~~i~~~~~~~~~ 112 (203)
T cd00405 68 IAEELG---LDVVQLHGDES----PEYCAQLRARLGLPVIKAIRVKDEEDLE 112 (203)
T ss_pred HHHhcC---CCEEEECCCCC----HHHHHHHHhhcCCcEEEEEecCChhhHH
Confidence 344454 78999998652 2233444443345678899999865543
No 134
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=39.95 E-value=3.6e+02 Score=26.16 Aligned_cols=108 Identities=18% Similarity=0.247 Sum_probs=64.1
Q ss_pred cccccccccCCC----CCCCCCCHHHHHHHHHHHHHcCCCEEecccCcCCCchHHHHHHHHhcCCCCCeEEEecccccCC
Q 019200 21 SKLGYGCMNLSG----GYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGI 96 (344)
Q Consensus 21 s~lglG~~~~~~----~~~~~~~~~~~~~~l~~Al~~Gin~~DtA~~Yg~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~ 96 (344)
.++.+|..+|.. ..|..-+.+++.+.++.+-+.|+.-+-.--.||-
T Consensus 149 NRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIygl------------------------------ 198 (416)
T COG0635 149 NRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYGL------------------------------ 198 (416)
T ss_pred CEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC------------------------------
Confidence 366666666543 1223335556666666666666655544444441
Q ss_pred CCcccccCCChHHHHHHHHHHHhhcCCCceeEEEe-ccCCCC----------CC-HH---HHHHH-HHHHHHcCcccEEe
Q 019200 97 GVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQ-HRVDTS----------VP-IE---ETIGE-MKKLVEEGKIKYIG 160 (344)
Q Consensus 97 ~~~~~~~~~~~~~i~~~v~~SL~rLg~d~iDl~~l-H~~~~~----------~~-~~---~~~~~-L~~l~~~G~ir~iG 160 (344)
+.-+.+.+.+.++..++ |+.|+|.+|.+ |-|... .+ .+ +.++. .+.|.+.|. +.+|
T Consensus 199 ------P~QT~~~~~~~l~~a~~-l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~ye 270 (416)
T COG0635 199 ------PGQTLESLKEDLEQALE-LGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGY-RQYE 270 (416)
T ss_pred ------CCCCHHHHHHHHHHHHh-CCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCC-cEEe
Confidence 23467778888876654 67999999977 444210 11 11 34444 445556676 9999
Q ss_pred cCCCCH
Q 019200 161 LSEASP 166 (344)
Q Consensus 161 vs~~~~ 166 (344)
+|||..
T Consensus 271 isnfa~ 276 (416)
T COG0635 271 ISNFAK 276 (416)
T ss_pred echhcC
Confidence 999876
No 135
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=39.88 E-value=2.8e+02 Score=24.88 Aligned_cols=99 Identities=18% Similarity=0.140 Sum_probs=63.7
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEE-eccCCCC-CCHH----HHHHHHHHHHHc-CcccEEecCCCCHHHHHHHhhcCC
Q 019200 105 GAPDYVRSCCEASLKRLDVDYIDLYY-QHRVDTS-VPIE----ETIGEMKKLVEE-GKIKYIGLSEASPGTIRRAHAVHP 177 (344)
Q Consensus 105 ~~~~~i~~~v~~SL~rLg~d~iDl~~-lH~~~~~-~~~~----~~~~~L~~l~~~-G~ir~iGvs~~~~~~l~~~~~~~~ 177 (344)
.+++.+.+.+++.+ .-|.++||+-- --+|+.. .+.+ .+...++.+++. +. -+.+-++.++.++++++.+.
T Consensus 20 ~~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~--plsiDT~~~~vi~~al~~G~ 96 (257)
T TIGR01496 20 LSVDKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDV--PISVDTYRAEVARAALEAGA 96 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC--eEEEeCCCHHHHHHHHHcCC
Confidence 56677666666554 55889999942 2234322 1222 255566666665 43 48888999999999998754
Q ss_pred ceeeeccccccccchhhhHHHHHHHhCCcEEecc
Q 019200 178 ITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYS 211 (344)
Q Consensus 178 ~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~ 211 (344)
.-++-+ +... ..++++.++++|..++.+.
T Consensus 97 ~iINsi--s~~~---~~~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 97 DIINDV--SGGQ---DPAMLEVAAEYGVPLVLMH 125 (257)
T ss_pred CEEEEC--CCCC---CchhHHHHHHcCCcEEEEe
Confidence 333333 2222 2478999999999999854
No 136
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=39.81 E-value=2.9e+02 Score=24.97 Aligned_cols=155 Identities=12% Similarity=0.128 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHcCCCEEecccCcCCCchHHHH--HHHHhc-CCCCCe-EEEecccccCCCCcccccCCChHHHHHHHHH
Q 019200 41 EDGISMIKHAFSKGITFFDTADVYGQNANEVLL--GKALKQ-LPREKI-QVATKFGIAGIGVAGVIVKGAPDYVRSCCEA 116 (344)
Q Consensus 41 ~~~~~~l~~Al~~Gin~~DtA~~Yg~g~sE~~l--G~~l~~-~~R~~~-~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~ 116 (344)
+...+.++..-+.|+.+|..++.=+.+..+..+ .+.|++ ..-+-+ .++. .+.++..+...+..
T Consensus 15 ~~l~~~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~~g~~~i~Hlt~-------------r~~n~~~l~~~L~~ 81 (272)
T TIGR00676 15 ENLWETVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKETGIPTVPHLTC-------------IGATREEIREILRE 81 (272)
T ss_pred HHHHHHHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHhcCCCeeEEeee-------------cCCCHHHHHHHHHH
Confidence 444555555557899999988765533333333 334442 111212 1222 23577788888774
Q ss_pred HHhhcCCCceeEEEecc-CC------CCCCHHHHHHHHHHHHHcCcccEEecCCCCH---------HHHHHHhhc----C
Q 019200 117 SLKRLDVDYIDLYYQHR-VD------TSVPIEETIGEMKKLVEEGKIKYIGLSEASP---------GTIRRAHAV----H 176 (344)
Q Consensus 117 SL~rLg~d~iDl~~lH~-~~------~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~---------~~l~~~~~~----~ 176 (344)
+..+|++ +++.|-. +. .........+.++.+++..---+||+..++- ..++.+... .
T Consensus 82 -~~~~Gi~--nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA 158 (272)
T TIGR00676 82 -YRELGIR--HILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGA 158 (272)
T ss_pred -HHHCCCC--EEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 4888865 3444432 22 1122334555555555542235788776421 233333332 3
Q ss_pred CceeeeccccccccchhhhHHHHHHHhCCcEEecccCCcccC
Q 019200 177 PITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFF 218 (344)
Q Consensus 177 ~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G~L 218 (344)
.+-+-|.-|+. +.-..+++.|++.|+.+ |+--|++
T Consensus 159 ~f~iTQ~~fd~---~~~~~~~~~~~~~gi~~----PIi~Gi~ 193 (272)
T TIGR00676 159 DYAITQLFFDN---DDYYRFVDRCRAAGIDV----PIIPGIM 193 (272)
T ss_pred CeEeeccccCH---HHHHHHHHHHHHcCCCC----CEecccC
Confidence 46667886665 32357888999997765 4444553
No 137
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=39.06 E-value=1.8e+02 Score=26.90 Aligned_cols=107 Identities=12% Similarity=0.140 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHcCCCEEecccCcCCCchHHHHHHHHhcCCCCCeEEEecccccCCCCcccccCCChHHHHHHHHHHHhh
Q 019200 41 EDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKR 120 (344)
Q Consensus 41 ~~~~~~l~~Al~~Gin~~DtA~~Yg~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~SL~r 120 (344)
+.-+++|+..-+.|+ .+|++.. |++.+-++++-. ...+|+|-.+...... ...+.+.+.++ ..-++
T Consensus 154 ~~G~~vv~~mn~lGm-iiDvSH~-----s~~~~~dv~~~s--~~PviaSHsn~ral~~--h~RNltD~~i~----~ia~~ 219 (309)
T cd01301 154 PFGKELVREMNRLGI-IIDLSHL-----SERTFWDVLDIS--NAPVIASHSNARALCD--HPRNLTDAQLK----AIAET 219 (309)
T ss_pred HHHHHHHHHHHHcCC-EEEcCCC-----CHHHHHHHHHhc--CCCEEEeccChHHhcC--CCCCCCHHHHH----HHHHc
Confidence 457899999999999 9999975 788888888742 3568888876443211 12334444443 23333
Q ss_pred cCCCceeEEEeccC---CCCCCHHHHHHHHHHHHHcCcccEEecCC
Q 019200 121 LDVDYIDLYYQHRV---DTSVPIEETIGEMKKLVEEGKIKYIGLSE 163 (344)
Q Consensus 121 Lg~d~iDl~~lH~~---~~~~~~~~~~~~L~~l~~~G~ir~iGvs~ 163 (344)
=| .|=+.+.-.. +....++++++.++.+.+..=+.+||+.+
T Consensus 220 GG--vigi~~~~~fl~~~~~~~~~~~~~hi~~i~~l~G~dhVgiGs 263 (309)
T cd01301 220 GG--VIGVNFYPAFLSPGADATLDDVVRHIDYIVDLIGIDHVGLGS 263 (309)
T ss_pred CC--EEEEeeeHHHhCCCCCCCHHHHHHHHHHHHHhcCCCeEEECc
Confidence 33 3333332211 23457889999999999987799999976
No 138
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=38.75 E-value=3.8e+02 Score=26.61 Aligned_cols=106 Identities=8% Similarity=0.042 Sum_probs=60.3
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcC-cccEEecCC----C--CHHHHHHHhhcC
Q 019200 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG-KIKYIGLSE----A--SPGTIRRAHAVH 176 (344)
Q Consensus 104 ~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G-~ir~iGvs~----~--~~~~l~~~~~~~ 176 (344)
..+++.|.+.++...++.|+.++ .+.+.+.....+.+.+.+++|++.| .-..++++. . +.+.++.+.+ .
T Consensus 221 ~rs~e~Vv~Ei~~l~~~~gv~~~---~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~-a 296 (497)
T TIGR02026 221 HRDPKKFVDEIEWLVRTHGVGFF---ILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRR-A 296 (497)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEE---EEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHH-h
Confidence 46889999999998888886543 3444333444566777888888887 323344432 1 3344444433 2
Q ss_pred Cceeeeccccccc--------cc----hhhhHHHHHHHhCCcEEecccC
Q 019200 177 PITAVQMEWSLWT--------RD----IEEEIIPLCRELGIGIVPYSPL 213 (344)
Q Consensus 177 ~~~~~q~~~n~~~--------~~----~~~~l~~~~~~~gi~v~a~~pl 213 (344)
.+..+.+..--.+ +. ...+.+..|+++||.+.+.-.+
T Consensus 297 G~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~ 345 (497)
T TIGR02026 297 GLVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFIT 345 (497)
T ss_pred CCcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEE
Confidence 3333333211111 11 1146888999999987654333
No 139
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=38.67 E-value=3.6e+02 Score=25.83 Aligned_cols=146 Identities=12% Similarity=0.108 Sum_probs=84.0
Q ss_pred CHHHHHHHHHHHHHcCCC-EEecccCcCCCchHHHHHHHHhcCCCCCeEEEecccccCC--CCcccccCCChHHHHHHHH
Q 019200 39 SEEDGISMIKHAFSKGIT-FFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGI--GVAGVIVKGAPDYVRSCCE 115 (344)
Q Consensus 39 ~~~~~~~~l~~Al~~Gin-~~DtA~~Yg~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~--~~~~~~~~~~~~~i~~~v~ 115 (344)
+-++-.+=+..|.+.|.. .-|-+ ..| .-.-+.+++=+ -..+=|.|= ..+.. ...+...+++.+.+.+.++
T Consensus 76 ~i~~EveK~~~A~~~GADtvMDLS-tGg---dl~eiR~~ii~--~s~vPvGTV-PIYqA~~~~~~~~~~~t~d~~~~~v~ 148 (432)
T COG0422 76 DIDEEVEKAVWAIKWGADTVMDLS-TGG---DLHEIREWIIR--NSPVPVGTV-PIYQALEEVNGKVEDLTEDDFFDTVE 148 (432)
T ss_pred CHHHHHHHHHHHHHhCcceeEecc-cCC---CHHHHHHHHHh--cCCCCcCCc-hHHHHHHHHhcchhhCCHHHHHHHHH
Confidence 555556777889999965 44544 234 33444444421 112212111 11100 0011245688888888888
Q ss_pred HHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhcCCceeeeccccccccchhhh
Q 019200 116 ASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDIEEE 195 (344)
Q Consensus 116 ~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~ 195 (344)
+..+ +-+|.+-+|.- -+.+.++.+++.|+ ..|+.+-...-+....-.. -.-|++.... .+
T Consensus 149 ~qa~----~GVdfmTIHaG-------V~~~~~~~~~~~~R--~~giVSRGGsi~a~Wml~~------~~ENply~~f-d~ 208 (432)
T COG0422 149 KQAE----QGVDFMTIHAG-------VLLEYVPRTKRSGR--VTGIVSRGGSIMAAWMLHN------HKENPLYEHF-DE 208 (432)
T ss_pred HHHH----hCCcEEEeehh-------hhHHHHHHHHhcCc--eeeeeccchHHHHHHHHHc------CCcCchhhhH-HH
Confidence 7766 34788888873 35778899999998 5666554444443332211 1235666655 47
Q ss_pred HHHHHHHhCCcEEecc
Q 019200 196 IIPLCRELGIGIVPYS 211 (344)
Q Consensus 196 l~~~~~~~gi~v~a~~ 211 (344)
+++.|+++.+.+-.-.
T Consensus 209 lleI~k~yDvtlSLGD 224 (432)
T COG0422 209 LLEIFKEYDVTLSLGD 224 (432)
T ss_pred HHHHHHHhCeeeeccC
Confidence 9999999999884433
No 140
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=38.56 E-value=3.4e+02 Score=25.48 Aligned_cols=151 Identities=9% Similarity=0.036 Sum_probs=83.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEecccCcCCCchHHHHHHHHhcCCCCCeEEEecccccCCCCcccccCCChHHHHHHHHHHH
Q 019200 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASL 118 (344)
Q Consensus 39 ~~~~~~~~l~~Al~~Gin~~DtA~~Yg~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~SL 118 (344)
+.++..+.+..+++.|++.|=.--....-..+.-.=+++++.-.+++.|..-.. ..++.+...+-++ .|
T Consensus 141 ~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~d~~~v~air~~~g~~~~l~vDaN----------~~~~~~~A~~~~~-~l 209 (355)
T cd03321 141 GAKLATERAVTAAEEGFHAVKTKIGYPTADEDLAVVRSIRQAVGDGVGLMVDYN----------QSLTVPEAIERGQ-AL 209 (355)
T ss_pred hHHHHHHHHHHHHHhhhHHHhhhcCCCChHhHHHHHHHHHHhhCCCCEEEEeCC----------CCcCHHHHHHHHH-HH
Confidence 335555666666777877553211011100122222334432223444443321 1245554333333 33
Q ss_pred hhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCccc-EEecCCCCHHHHHHHhhcCCceeeeccccccccc-hhhhH
Q 019200 119 KRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRD-IEEEI 196 (344)
Q Consensus 119 ~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~l 196 (344)
+.+ ++.++..|-.. +-++.+.+|+++--|. +.|=+.++.+.+.++++...++++|+..+.+--- .-.++
T Consensus 210 ~~~-----~i~~iEeP~~~----~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~d~i~~~~~~~GGit~~~~i 280 (355)
T cd03321 210 DQE-----GLTWIEEPTLQ----HDYEGHARIASALRTPVQMGENWLGPEEMFKALSAGACDLVMPDLMKIGGVTGWLRA 280 (355)
T ss_pred HcC-----CCCEEECCCCC----cCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCCCCeEecCHhhhCCHHHHHHH
Confidence 444 45555555432 2356777777765433 4455567899999999888889999877765321 12579
Q ss_pred HHHHHHhCCcEEe
Q 019200 197 IPLCRELGIGIVP 209 (344)
Q Consensus 197 ~~~~~~~gi~v~a 209 (344)
..+|+.+|+.++.
T Consensus 281 a~~A~~~gi~~~~ 293 (355)
T cd03321 281 SALAEQAGIPMSS 293 (355)
T ss_pred HHHHHHcCCeecc
Confidence 9999999999864
No 141
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=38.29 E-value=3.1e+02 Score=26.64 Aligned_cols=96 Identities=8% Similarity=0.026 Sum_probs=61.9
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcC--cccEEecCCC--CHHHHHHHhhcCCcee
Q 019200 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG--KIKYIGLSEA--SPGTIRRAHAVHPITA 180 (344)
Q Consensus 105 ~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G--~ir~iGvs~~--~~~~l~~~~~~~~~~~ 180 (344)
++++...+-+++.++.+ +++++-.|-+.. -|+.+.+|.++- .+.-+|=-.+ +++.++++++....++
T Consensus 262 ~s~~eai~~~~~lle~~-----~i~~iEdPl~~~----D~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~~a~d~ 332 (425)
T TIGR01060 262 LTSEEMIEYYKELVEKY-----PIVSIEDGLSEE----DWEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEMGVANS 332 (425)
T ss_pred cCHHHHHHHHHHHHhcC-----CcEEEEcCCCcc----cHHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHhCCCCE
Confidence 45555555444444443 566777665433 355666676654 5544443322 5899999998888899
Q ss_pred eeccccccccc-hhhhHHHHHHHhCCcEEe
Q 019200 181 VQMEWSLWTRD-IEEEIIPLCRELGIGIVP 209 (344)
Q Consensus 181 ~q~~~n~~~~~-~~~~l~~~~~~~gi~v~a 209 (344)
+|+..|-.-.= ...++...|+.+|+.++.
T Consensus 333 v~ik~~~iGGItea~~ia~lA~~~Gi~~vv 362 (425)
T TIGR01060 333 ILIKPNQIGTLTETLDAVELAKKAGYTAVI 362 (425)
T ss_pred EEecccccCCHHHHHHHHHHHHHcCCcEEE
Confidence 99987764321 126789999999999664
No 142
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=38.27 E-value=1.2e+02 Score=25.01 Aligned_cols=76 Identities=16% Similarity=0.100 Sum_probs=47.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEecccCcCCCchHHHHHHHHhcCCCCCeEEEec-ccccCCCCcccccCCChHHHHHH
Q 019200 35 SSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATK-FGIAGIGVAGVIVKGAPDYVRSC 113 (344)
Q Consensus 35 ~~~~~~~~~~~~l~~Al~~Gin~~DtA~~Yg~g~sE~~lG~~l~~~~R~~~~I~tK-~~~~~~~~~~~~~~~~~~~i~~~ 113 (344)
|...+++...-.+++|-+.||.+|=.|..||. +-.-+-+.+.. . =++++.|- .|+... ..-.+...
T Consensus 8 G~eNT~~tle~a~erA~elgik~~vVAS~tG~--tA~k~lemveg-~-lkvVvVthh~Gf~e~---------g~~e~~~E 74 (186)
T COG1751 8 GKENTDETLEIAVERAKELGIKHIVVASSTGY--TALKALEMVEG-D-LKVVVVTHHAGFEEK---------GTQEMDEE 74 (186)
T ss_pred cccchHHHHHHHHHHHHhcCcceEEEEecccH--HHHHHHHhccc-C-ceEEEEEeecccccC---------CceecCHH
Confidence 33446666777888888999999999999985 33333333321 1 23554444 444331 23346677
Q ss_pred HHHHHhhcCC
Q 019200 114 CEASLKRLDV 123 (344)
Q Consensus 114 v~~SL~rLg~ 123 (344)
+++-|+..|.
T Consensus 75 ~~~~L~erGa 84 (186)
T COG1751 75 VRKELKERGA 84 (186)
T ss_pred HHHHHHHcCc
Confidence 7888888884
No 143
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=38.24 E-value=1.8e+02 Score=24.50 Aligned_cols=97 Identities=11% Similarity=0.100 Sum_probs=61.1
Q ss_pred cCCCEEeccc--------CcCCCchHHHHHHHHhcCCCCCeEEEecccccCCCCcc--cccCCChHHHHHHHHHHHhhcC
Q 019200 53 KGITFFDTAD--------VYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAG--VIVKGAPDYVRSCCEASLKRLD 122 (344)
Q Consensus 53 ~Gin~~DtA~--------~Yg~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~--~~~~~~~~~i~~~v~~SL~rLg 122 (344)
.+|-++||-. .|- |+.+..+-..|++ .|=+++|.++--....+++. ......+..+.+-+++.|++-+
T Consensus 79 ~~v~fiDTD~itT~~~~~~y~-gr~~P~~~~~i~~-~r~DL~lLl~p~t~wvaDG~R~~~~~~~R~~F~~~l~~~L~~~~ 156 (187)
T COG3172 79 NKVAFIDTDFLTTQAFCKKYE-GREHPFLQALIAE-YRFDLTLLLEPNTPWVADGLRSLGSSVQRQEFQNLLEQMLEENN 156 (187)
T ss_pred CceEEEeccHHHHHHHHHHHc-ccCCchHHHHHhh-cccceEEEcCCCCceeCCCccccccHhHHHHHHHHHHHHHHHhC
Confidence 5999999853 221 3334455566664 67788877765432222221 2233577889999999999998
Q ss_pred CCceeEEEeccCCCCCCHHHHHHHHHHHHHcC
Q 019200 123 VDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG 154 (344)
Q Consensus 123 ~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G 154 (344)
..|+ -+..++-.......+++.++|...+
T Consensus 157 ~~~v---~i~~~~y~eR~~~~~~aV~ell~~~ 185 (187)
T COG3172 157 IPFV---VIEGEDYLERYLQAVEAVEELLGEK 185 (187)
T ss_pred CcEE---EEcCCCHHHHHHHHHHHHHHHHhcc
Confidence 6654 4455544445567788888887766
No 144
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=37.99 E-value=2.1e+02 Score=26.87 Aligned_cols=148 Identities=18% Similarity=0.175 Sum_probs=81.2
Q ss_pred CCCCeeecCCCCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCC--CEEecccCcCCCchHHHHHHHHhcCCCC
Q 019200 6 HQVPRVKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGI--TFFDTADVYGQNANEVLLGKALKQLPRE 83 (344)
Q Consensus 6 ~~m~~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~Al~~Gi--n~~DtA~~Yg~g~sE~~lG~~l~~~~R~ 83 (344)
++|++..++ .|..|-..|+|. +|. =.++.|-..|. ..||++.. ..|+.+- ...-|
T Consensus 172 spLk~~g~~-pG~~vgI~GlGG--LGh------------~aVq~AKAMG~rV~vis~~~~----kkeea~~----~LGAd 228 (360)
T KOG0023|consen 172 SPLKRSGLG-PGKWVGIVGLGG--LGH------------MAVQYAKAMGMRVTVISTSSK----KKEEAIK----SLGAD 228 (360)
T ss_pred ehhHHcCCC-CCcEEEEecCcc--cch------------HHHHHHHHhCcEEEEEeCCch----hHHHHHH----hcCcc
Confidence 367777886 788888888886 543 23455555555 46676531 1344433 22334
Q ss_pred CeEEEecccccCCCCcccccCCChHHHHHHHHHHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecCC
Q 019200 84 KIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE 163 (344)
Q Consensus 84 ~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~ 163 (344)
.++++||- + .+.+++..++.-. .+.+--+ ...+ .-..++-||..|++-.+|+-.
T Consensus 229 ~fv~~~~d---------------~-d~~~~~~~~~dg~-~~~v~~~------a~~~---~~~~~~~lk~~Gt~V~vg~p~ 282 (360)
T KOG0023|consen 229 VFVDSTED---------------P-DIMKAIMKTTDGG-IDTVSNL------AEHA---LEPLLGLLKVNGTLVLVGLPE 282 (360)
T ss_pred eeEEecCC---------------H-HHHHHHHHhhcCc-ceeeeec------cccc---hHHHHHHhhcCCEEEEEeCcC
Confidence 55555542 2 2444444444322 2222111 2222 334677889999999999976
Q ss_pred CCHHHHHHHhhcCC--ceeeeccccccccc-hhhhHHHHHHHhCCcE
Q 019200 164 ASPGTIRRAHAVHP--ITAVQMEWSLWTRD-IEEEIIPLCRELGIGI 207 (344)
Q Consensus 164 ~~~~~l~~~~~~~~--~~~~q~~~n~~~~~-~~~~l~~~~~~~gi~v 207 (344)
... .+ ...+ +.-..+..|..-.. ..+++++||.+++|..
T Consensus 283 ~~~-~~----~~~~lil~~~~I~GS~vG~~ket~E~Ldf~a~~~ik~ 324 (360)
T KOG0023|consen 283 KPL-KL----DTFPLILGRKSIKGSIVGSRKETQEALDFVARGLIKS 324 (360)
T ss_pred Ccc-cc----cchhhhcccEEEEeeccccHHHHHHHHHHHHcCCCcC
Confidence 421 11 1111 12234445554333 2378999999998754
No 145
>PRK09061 D-glutamate deacylase; Validated
Probab=37.80 E-value=2.9e+02 Score=27.56 Aligned_cols=114 Identities=8% Similarity=0.016 Sum_probs=64.1
Q ss_pred HHHHHHHHHHcCCCEEecccCcCCCchHHHHHHHHhcCCCCCeEEEecccccCCCCcccccCCChHHHHHHHHHHHhhcC
Q 019200 43 GISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLD 122 (344)
Q Consensus 43 ~~~~l~~Al~~Gin~~DtA~~Yg~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~SL~rLg 122 (344)
..++++.|++.|+..|=+...|..+.+...+-+.++...+.+..|.+.+--.. ..+......++++.++.-.
T Consensus 171 m~~ll~~al~~Ga~gis~~~~y~p~~~~~eL~~l~~~A~~~g~~v~~H~e~~~--------~~~~~~e~~av~~~i~lA~ 242 (509)
T PRK09061 171 ILELLEQGLDEGALGIGIGAGYAPGTGHKEYLELARLAARAGVPTYTHVRYLS--------NVDPRSSVDAYQELIAAAA 242 (509)
T ss_pred HHHHHHHHHHCCCCEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEEEecCcc--------cCCchhHHHHHHHHHHHHH
Confidence 67788889999999997766664444555565555543445666666553111 0111222233333333222
Q ss_pred CCceeEEEeccCC-CCCCHHHHHHHHHHHHHcCcccEEecCCC
Q 019200 123 VDYIDLYYQHRVD-TSVPIEETIGEMKKLVEEGKIKYIGLSEA 164 (344)
Q Consensus 123 ~d~iDl~~lH~~~-~~~~~~~~~~~L~~l~~~G~ir~iGvs~~ 164 (344)
..-.-+...|-.. ......+.++.+++++++|.--..-++-|
T Consensus 243 ~~G~rv~IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt~e~~P~ 285 (509)
T PRK09061 243 ETGAHMHICHVNSTSLRDIDRCLALVEKAQAQGLDVTTEAYPY 285 (509)
T ss_pred HhCCCEEEEeeccCCcccHHHHHHHHHHHHHcCCcEEEEecCc
Confidence 1113356666643 22356788999999999996444444433
No 146
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=37.68 E-value=1.1e+02 Score=28.00 Aligned_cols=115 Identities=16% Similarity=0.155 Sum_probs=63.4
Q ss_pred HHHHHHHc--CcccEEecCCCCHHHHHHHhhc----CCceeeeccccccccc-h--hhhHHHHHHHhCCcEEecccCCcc
Q 019200 146 EMKKLVEE--GKIKYIGLSEASPGTIRRAHAV----HPITAVQMEWSLWTRD-I--EEEIIPLCRELGIGIVPYSPLGRG 216 (344)
Q Consensus 146 ~L~~l~~~--G~ir~iGvs~~~~~~l~~~~~~----~~~~~~q~~~n~~~~~-~--~~~l~~~~~~~gi~v~a~~pl~~G 216 (344)
.++.|... +++-.+--++++.+...++.+. .+ ......+|-++.. . ...+.+++++-++-++.-+.-+.
T Consensus 145 ~~~~l~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~-~~~~~~~nTIC~aT~~RQ~a~~~La~~vD~miVIGg~~Ss- 222 (281)
T PF02401_consen 145 DVEKLPISDPKKVAVVSQTTQSVEKFEEIVEALKKRFP-ELEGPVFNTICYATQNRQEAARELAKEVDAMIVIGGKNSS- 222 (281)
T ss_dssp HHHHGGGSSTTCEEEEE-TTS-HHHHHHHHHHHHHHST-CEE-SCC-S--CHHHHHHHHHHHHHCCSSEEEEES-TT-H-
T ss_pred hhcccCCCCCCeEEEEEeecccHHHHHHHHHHHHHhCc-cccCCCCCCCCHhHHHHHHHHHHHHhhCCEEEEecCCCCc-
Confidence 34444433 4777777788888776665544 22 2221223333322 1 24577777776666655322221
Q ss_pred cCCCCCCCCCCCCCcccccccCccccchhhhHHHHHHHHHHHHHcCC------CHHHHHHHHHHhCCCCeEeecCCCCHH
Q 019200 217 FFGGKAVVENVPADSFLHFLPRFKGENLDRNKSIYFRIGNLAKKYNC------TSAQLALAWVLGQGDDVVPIPGTTKMK 290 (344)
Q Consensus 217 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~------s~~qlal~~~l~~~~v~~vi~G~~~~~ 290 (344)
=...|.++|++++. ++.++...|.-... ...+..|+|+|+
T Consensus 223 ---------------------------------NT~kL~eia~~~~~~t~~Ie~~~el~~~~l~~~~-~VGItaGASTP~ 268 (281)
T PF02401_consen 223 ---------------------------------NTRKLAEIAKEHGKPTYHIETADELDPEWLKGVK-KVGITAGASTPD 268 (281)
T ss_dssp ---------------------------------HHHHHHHHHHHCTTCEEEESSGGG--HHHHTT-S-EEEEEE-TTS-H
T ss_pred ---------------------------------cHHHHHHHHHHhCCCEEEeCCccccCHhHhCCCC-EEEEEccCCCCH
Confidence 11578899999874 78899999988776 457889999999
Q ss_pred HHHHHH
Q 019200 291 NLDDNI 296 (344)
Q Consensus 291 ~l~~nl 296 (344)
.+-+.+
T Consensus 269 ~ii~eV 274 (281)
T PF02401_consen 269 WIIEEV 274 (281)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876654
No 147
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=37.63 E-value=2.4e+02 Score=25.35 Aligned_cols=102 Identities=20% Similarity=0.177 Sum_probs=0.0
Q ss_pred ccCCChHHHHHHHHHHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhcCCceee
Q 019200 102 IVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAV 181 (344)
Q Consensus 102 ~~~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~ 181 (344)
...++.+...+-++. |.++|++.|.+-. |.......+..+.+.++..+-++ ++....+.+.++.+.+. .++.+
T Consensus 16 ~~~~s~~~k~~i~~~-L~~~Gv~~IEvG~---P~~~~~~~~~~~~l~~~~~~~~v--~~~~r~~~~di~~a~~~-g~~~i 88 (262)
T cd07948 16 NAFFDTEDKIEIAKA-LDAFGVDYIELTS---PAASPQSRADCEAIAKLGLKAKI--LTHIRCHMDDARIAVET-GVDGV 88 (262)
T ss_pred CCCCCHHHHHHHHHH-HHHcCCCEEEEEC---CCCCHHHHHHHHHHHhCCCCCcE--EEEecCCHHHHHHHHHc-CcCEE
Q ss_pred eccccc--------cccchh------hhHHHHHHHhCCcEEec
Q 019200 182 QMEWSL--------WTRDIE------EEIIPLCRELGIGIVPY 210 (344)
Q Consensus 182 q~~~n~--------~~~~~~------~~l~~~~~~~gi~v~a~ 210 (344)
-+.+.. +.+..+ .+++.+++++|+.|...
T Consensus 89 ~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~ 131 (262)
T cd07948 89 DLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFS 131 (262)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE
No 148
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=37.59 E-value=2e+02 Score=26.85 Aligned_cols=69 Identities=17% Similarity=0.167 Sum_probs=51.5
Q ss_pred HHHHHHHHHHcCccc-EEecCCCCHHHHHHHhhcCCceeeecccccccc-chhhhHHHHHHHhCCcEEecc
Q 019200 143 TIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTR-DIEEEIIPLCRELGIGIVPYS 211 (344)
Q Consensus 143 ~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~~~gi~v~a~~ 211 (344)
.++.+.+|+++..+. +.|=+.++...+..+++...++++|+..+..-. ..-..+...|+.+|+.++.++
T Consensus 210 d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a~d~i~~d~~~~GGit~~~~i~~~A~~~g~~~~~h~ 280 (341)
T cd03327 210 DIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGRAVDILQPDVNWVGGITELKKIAALAEAYGVPVVPHA 280 (341)
T ss_pred CHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeecccc
Confidence 366777888876666 555566788999999988888999997665421 112679999999999987643
No 149
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=37.31 E-value=2.2e+02 Score=27.19 Aligned_cols=90 Identities=11% Similarity=0.120 Sum_probs=0.0
Q ss_pred EEEeccCCC-----------CCCHHHHHHHHHHHH-HcCc---ccEEecCCCCHHH-----HHHHhhcC---Cceeeecc
Q 019200 128 LYYQHRVDT-----------SVPIEETIGEMKKLV-EEGK---IKYIGLSEASPGT-----IRRAHAVH---PITAVQME 184 (344)
Q Consensus 128 l~~lH~~~~-----------~~~~~~~~~~L~~l~-~~G~---ir~iGvs~~~~~~-----l~~~~~~~---~~~~~q~~ 184 (344)
.+.||.+++ ..+++++++++.++. +.|+ |+|+=+.+.+-.. +.+++... +..++-++
T Consensus 241 avSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIp 320 (373)
T PRK14459 241 AVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIP 320 (373)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEc
Q ss_pred ccccccchh--------hhHHHHHHHhCCcEEecccCCccc
Q 019200 185 WSLWTRDIE--------EEIIPLCRELGIGIVPYSPLGRGF 217 (344)
Q Consensus 185 ~n~~~~~~~--------~~l~~~~~~~gi~v~a~~pl~~G~ 217 (344)
||+...... ....+..+++||.+......+..+
T Consensus 321 yNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G~dI 361 (373)
T PRK14459 321 LNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQEI 361 (373)
T ss_pred cCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCCcCH
No 150
>PRK05588 histidinol-phosphatase; Provisional
Probab=37.26 E-value=3e+02 Score=24.42 Aligned_cols=104 Identities=19% Similarity=0.233 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHcCCCEEecccCcCCC---------chHHHHHHHHhcCCCCCeEEEecccccCCCCcccccCCChHHHH
Q 019200 41 EDGISMIKHAFSKGITFFDTADVYGQN---------ANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVR 111 (344)
Q Consensus 41 ~~~~~~l~~Al~~Gin~~DtA~~Yg~g---------~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~ 111 (344)
....+.+++|.+.|++.+ .++|.... .-+..+-+ ++..+..+|.+..-++ +.++ ..
T Consensus 16 ~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~~~-i~~~~~~~I~~GiE~~------------~~~~-~~ 80 (255)
T PRK05588 16 MKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYFNK-YSKYRNNKLLLGIELG------------MEKD-LI 80 (255)
T ss_pred cCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHHHH-HHHHhcCCcceEEEec------------ccCC-CH
Confidence 447899999999999998 77764210 01122211 1212222333322222 2222 34
Q ss_pred HHHHHHHhhcCCCceeEEEeccCCCCC----------CHHHH----HHHHHHHHH-cCcccEEe
Q 019200 112 SCCEASLKRLDVDYIDLYYQHRVDTSV----------PIEET----IGEMKKLVE-EGKIKYIG 160 (344)
Q Consensus 112 ~~v~~SL~rLg~d~iDl~~lH~~~~~~----------~~~~~----~~~L~~l~~-~G~ir~iG 160 (344)
..+++.|++...||+ +..+|+.+... +.++. ++.+.++++ .|++..+|
T Consensus 81 ~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~~dvlg 143 (255)
T PRK05588 81 EENKELINKYEFDYV-IGSIHLVDKLDLYLDEFYKDKSKEEAYHIYFENMLKCLEKYDFIDSLG 143 (255)
T ss_pred HHHHHHHhhCCCCeE-EEeEEeeCCCcchHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 555778887787877 78899864211 22332 356666665 45554444
No 151
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=37.23 E-value=3.6e+02 Score=25.54 Aligned_cols=26 Identities=8% Similarity=0.207 Sum_probs=22.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEeccc
Q 019200 37 PVSEEDGISMIKHAFSKGITFFDTAD 62 (344)
Q Consensus 37 ~~~~~~~~~~l~~Al~~Gin~~DtA~ 62 (344)
..+.++..++.+..-+.||..++.+.
T Consensus 18 ~~s~~~k~~ia~~L~~~Gv~~IEvG~ 43 (363)
T TIGR02090 18 SLTVEQKVEIARKLDELGVDVIEAGF 43 (363)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 35778899999999999999999753
No 152
>PLN02428 lipoic acid synthase
Probab=37.02 E-value=3.7e+02 Score=25.45 Aligned_cols=157 Identities=14% Similarity=0.229 Sum_probs=81.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEecc----cCcCCCchHHHHHHHHhcCCC--CCeEEEecccccCCCCcccccCCChHHHH
Q 019200 38 VSEEDGISMIKHAFSKGITFFDTA----DVYGQNANEVLLGKALKQLPR--EKIQVATKFGIAGIGVAGVIVKGAPDYVR 111 (344)
Q Consensus 38 ~~~~~~~~~l~~Al~~Gin~~DtA----~~Yg~g~sE~~lG~~l~~~~R--~~~~I~tK~~~~~~~~~~~~~~~~~~~i~ 111 (344)
.+.++..++.+.+.+.|++++=-. +.|.++..+ .+.+.++..++ ..+.|.. +.+.. ..+
T Consensus 130 ~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~ga~-~~~elir~Ir~~~P~i~Ie~-L~pdf--------~~d----- 194 (349)
T PLN02428 130 PDPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGGSG-HFAETVRRLKQLKPEILVEA-LVPDF--------RGD----- 194 (349)
T ss_pred CChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCcccHH-HHHHHHHHHHHhCCCcEEEE-eCccc--------cCC-----
Confidence 356677788888888898866422 123333233 33333333211 1222222 11110 011
Q ss_pred HHHHHHHhhcCCCceeEEEeccCCC-----------CCCHHHHHHHHHHHHHc--Cccc----EEecCCCCHHHHHHHhh
Q 019200 112 SCCEASLKRLDVDYIDLYYQHRVDT-----------SVPIEETIGEMKKLVEE--GKIK----YIGLSEASPGTIRRAHA 174 (344)
Q Consensus 112 ~~v~~SL~rLg~d~iDl~~lH~~~~-----------~~~~~~~~~~L~~l~~~--G~ir----~iGvs~~~~~~l~~~~~ 174 (344)
++.|++|.-.-+|.+ -|+++. ....++.++.|+.+++. |..- -+|+ +-+.+++.+.+.
T Consensus 195 ---~elL~~L~eAG~d~i-~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGL-GET~Edv~e~l~ 269 (349)
T PLN02428 195 ---LGAVETVATSGLDVF-AHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGL-GETDEEVVQTME 269 (349)
T ss_pred ---HHHHHHHHHcCCCEE-ccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEec-CCCHHHHHHHHH
Confidence 333333332335663 366653 13467889999999988 7653 3566 445555554433
Q ss_pred c---CCceeeec-c----------cccccc-chhhhHHHHHHHhCCcEEecccCC
Q 019200 175 V---HPITAVQM-E----------WSLWTR-DIEEEIIPLCRELGIGIVPYSPLG 214 (344)
Q Consensus 175 ~---~~~~~~q~-~----------~n~~~~-~~~~~l~~~~~~~gi~v~a~~pl~ 214 (344)
. ..++++.+ + .+.+-. .....+-+++.+.|...++.+||-
T Consensus 270 ~Lrelgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sgp~v 324 (349)
T PLN02428 270 DLRAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGPLV 324 (349)
T ss_pred HHHHcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCceEEecCcc
Confidence 2 33333322 2 222221 112568888889999999999986
No 153
>PLN02389 biotin synthase
Probab=36.53 E-value=3.9e+02 Score=25.57 Aligned_cols=101 Identities=16% Similarity=0.203 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEecccCcCCCchH----HHHHHHHhcCCCCCeEEEecccccCCCCcccccCCChHHHHHH
Q 019200 38 VSEEDGISMIKHAFSKGITFFDTADVYGQNANE----VLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSC 113 (344)
Q Consensus 38 ~~~~~~~~~l~~Al~~Gin~~DtA~~Yg~g~sE----~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~ 113 (344)
.+.++..+..+.+.+.|++.|--...+..+..| ..+-+.++..+...+.|....|. .+.+.+
T Consensus 116 Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~l~i~~s~G~-----------l~~E~l--- 181 (379)
T PLN02389 116 MSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGMEVCCTLGM-----------LEKEQA--- 181 (379)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCCcEEEECCCC-----------CCHHHH---
Confidence 588999999999999999988532221111122 34445555433334555544432 222322
Q ss_pred HHHHHhhcCCCceeEEEecc-C------CCCCCHHHHHHHHHHHHHcCc
Q 019200 114 CEASLKRLDVDYIDLYYQHR-V------DTSVPIEETIGEMKKLVEEGK 155 (344)
Q Consensus 114 v~~SL~rLg~d~iDl~~lH~-~------~~~~~~~~~~~~L~~l~~~G~ 155 (344)
+-|+.-|+|++-+-+ .. + -....+++.++.++.+++.|.
T Consensus 182 --~~LkeAGld~~~~~L-eTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi 227 (379)
T PLN02389 182 --AQLKEAGLTAYNHNL-DTSREYYPNVITTRSYDDRLETLEAVREAGI 227 (379)
T ss_pred --HHHHHcCCCEEEeee-cCChHHhCCcCCCCCHHHHHHHHHHHHHcCC
Confidence 344555766543321 11 1 012357888999999999985
No 154
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=36.23 E-value=1.3e+02 Score=26.02 Aligned_cols=89 Identities=17% Similarity=0.228 Sum_probs=55.2
Q ss_pred hhcCCCceeEEEec-cCCCC-CC----HHHHHHHHHHHHH--cCcccEEecCCCCHHHHHHHhhcCCceeeecccccccc
Q 019200 119 KRLDVDYIDLYYQH-RVDTS-VP----IEETIGEMKKLVE--EGKIKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWTR 190 (344)
Q Consensus 119 ~rLg~d~iDl~~lH-~~~~~-~~----~~~~~~~L~~l~~--~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~ 190 (344)
..-|-++||+---- +|... .+ ++.+...++.+++ .+. -+.+-++.++.++++++. ..+++--..+. ..
T Consensus 29 ~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~--plSIDT~~~~v~~~aL~~-g~~~ind~~~~-~~ 104 (210)
T PF00809_consen 29 VEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDV--PLSIDTFNPEVAEAALKA-GADIINDISGF-ED 104 (210)
T ss_dssp HHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTS--EEEEEESSHHHHHHHHHH-TSSEEEETTTT-SS
T ss_pred HHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCe--EEEEECCCHHHHHHHHHc-CcceEEecccc-cc
Confidence 34488999986443 33321 22 3345556666665 344 677778999999999887 33332222221 11
Q ss_pred chhhhHHHHHHHhCCcEEecccC
Q 019200 191 DIEEEIIPLCRELGIGIVPYSPL 213 (344)
Q Consensus 191 ~~~~~l~~~~~~~gi~v~a~~pl 213 (344)
..++++.+++++..++++..-
T Consensus 105 --~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 105 --DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp --STTHHHHHHHHTSEEEEESES
T ss_pred --cchhhhhhhcCCCEEEEEecc
Confidence 257999999999999987554
No 155
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=36.22 E-value=4.2e+02 Score=25.91 Aligned_cols=83 Identities=11% Similarity=0.082 Sum_probs=54.7
Q ss_pred cCCChHHHHHHHHHHHhhcCCCceeEEEeccC-CCCCCHHHHHHHHHHHHHc--CcccEEecCCCC---HHHHHHHhhcC
Q 019200 103 VKGAPDYVRSCCEASLKRLDVDYIDLYYQHRV-DTSVPIEETIGEMKKLVEE--GKIKYIGLSEAS---PGTIRRAHAVH 176 (344)
Q Consensus 103 ~~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~-~~~~~~~~~~~~L~~l~~~--G~ir~iGvs~~~---~~~l~~~~~~~ 176 (344)
...+++.+.+.+++..+.++ .++.+-+-.+ ++....+.+++.|..++++ |. .+.+++.. ++.++++.+.
T Consensus 58 ~~Ltpee~~~~i~~v~~~~~--~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i--~i~lsTNG~~l~e~i~~L~~~- 132 (442)
T TIGR01290 58 ELLTPEQALRKARQVAAEIP--QLSVVGIAGPGDPLANIGKTFQTLELVARQLPDV--KLCLSTNGLMLPEHVDRLVDL- 132 (442)
T ss_pred ccCCHHHHHHHHHHHHHhcC--CCCEEEEecCCCcccCccccHHHHHHHHHhcCCC--eEEEECCCCCCHHHHHHHHHC-
Confidence 35788999999888877662 3455666664 4544556788899999988 44 56666543 5667776664
Q ss_pred Cceeeecccccccc
Q 019200 177 PITAVQMEWSLWTR 190 (344)
Q Consensus 177 ~~~~~q~~~n~~~~ 190 (344)
.++.+.+..+-+++
T Consensus 133 gvd~V~islka~d~ 146 (442)
T TIGR01290 133 GVGHVTITINAIDP 146 (442)
T ss_pred CCCeEEEeccCCCH
Confidence 24566666665543
No 156
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=35.91 E-value=3.8e+02 Score=25.27 Aligned_cols=93 Identities=13% Similarity=0.012 Sum_probs=61.5
Q ss_pred CCCeEEEecccccCCC------CcccccCCChHHHHHHHHHHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHc-C
Q 019200 82 REKIQVATKFGIAGIG------VAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEE-G 154 (344)
Q Consensus 82 R~~~~I~tK~~~~~~~------~~~~~~~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~-G 154 (344)
|..+.|+|-+|..-.- ..+...+.+...|..++-..-+.++....-++++--=+|..-++.+++++..+++. |
T Consensus 104 ~~t~CvSsQvGC~m~C~FC~tg~~g~~rnlta~EI~~qv~~~~~~~~~~~~niVFmGmGEPL~N~d~V~~~~~~l~~~~~ 183 (342)
T PRK14465 104 RKTICISSQIGCTLNCKFCATAKLEFQGNLKAHEIVDQVLQVEKIVGDRATNVVFMGMGEPMHNYFNVIRAASILHDPDA 183 (342)
T ss_pred ceEEEEEecCCCCCCCCCCcCCCCCccCCCCHHHHHHHHHHHHHhcCCCceEEEEEcCCcchhhHHHHHHHHHHHhChhh
Confidence 3457788877754321 12345678999999998776666665555666666556666678889999988875 3
Q ss_pred ---cccEEecCCCCH-HHHHHHhh
Q 019200 155 ---KIKYIGLSEASP-GTIRRAHA 174 (344)
Q Consensus 155 ---~ir~iGvs~~~~-~~l~~~~~ 174 (344)
.-+.|-||+... ..+.++.+
T Consensus 184 ~~~~~r~itvST~G~~~~i~~l~~ 207 (342)
T PRK14465 184 FNLGAKRITISTSGVVNGIRRFIE 207 (342)
T ss_pred hcCCCCeEEEeCCCchHHHHHHHh
Confidence 356788887644 45555554
No 157
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=35.88 E-value=2e+02 Score=25.16 Aligned_cols=76 Identities=14% Similarity=0.115 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEecccCcC-CCchHHHHHHHHhcCCCCCeEEEecccccCCCCcccccCCChHHHHHHHHH
Q 019200 38 VSEEDGISMIKHAFSKGITFFDTADVYG-QNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEA 116 (344)
Q Consensus 38 ~~~~~~~~~l~~Al~~Gin~~DtA~~Yg-~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~ 116 (344)
.++++..++.+.+.+.|..|+=|+..|+ .|.+-+.+....+.. +.++ ..|..- .=.+.+...+-++.
T Consensus 133 L~~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~~~-~~~~--~IKasG---------GIrt~~~a~~~i~a 200 (221)
T PRK00507 133 LTDEEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRETV-GPRV--GVKASG---------GIRTLEDALAMIEA 200 (221)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHh-CCCc--eEEeeC---------CcCCHHHHHHHHHc
Confidence 3678889999999999999999999985 456666665544432 2222 222211 11456677777777
Q ss_pred HHhhcCCCc
Q 019200 117 SLKRLDVDY 125 (344)
Q Consensus 117 SL~rLg~d~ 125 (344)
--.|+||.+
T Consensus 201 GA~riGtS~ 209 (221)
T PRK00507 201 GATRLGTSA 209 (221)
T ss_pred CcceEccCc
Confidence 667777653
No 158
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=35.79 E-value=3.2e+02 Score=24.35 Aligned_cols=65 Identities=15% Similarity=0.050 Sum_probs=36.9
Q ss_pred HHHHHHcCcccEEec--CCCCHHHHHHHhhc-CCceeeeccccccccchhhhHHHHHHHhCCcEEeccc
Q 019200 147 MKKLVEEGKIKYIGL--SEASPGTIRRAHAV-HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSP 212 (344)
Q Consensus 147 L~~l~~~G~ir~iGv--s~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~p 212 (344)
|.+..++|+. .+|+ ...++..++.+... ..+.++-++.++++...-..++..++..|+.++.+-|
T Consensus 3 lk~~l~~g~~-~~g~~~~~~~p~~~e~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~ 70 (249)
T TIGR02311 3 FKQALKEGQP-QIGLWLGLADPYAAEICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPA 70 (249)
T ss_pred HHHHHHCCCc-eEEEEEeCCCcHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECC
Confidence 3444555775 3443 33455555555443 3344455677777654334577777777877777643
No 159
>COG3215 PilZ Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=35.66 E-value=1.3e+02 Score=22.85 Aligned_cols=80 Identities=26% Similarity=0.116 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEecccCcCCCchHHHHHHHHhcCCCCCeEEEecccccCCCCc-------cccc--CCChHH
Q 019200 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVA-------GVIV--KGAPDY 109 (344)
Q Consensus 39 ~~~~~~~~l~~Al~~Gin~~DtA~~Yg~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~-------~~~~--~~~~~~ 109 (344)
|..-..+..--.+++|.=|+-|-..|.-| .|.++---|-+ ..+++++++|+.+..+.+. +... +-.-..
T Consensus 18 D~a~LYsaYMpfl~nGglFVpTnk~y~iG-~evfl~l~lld-~pekl~vagkVaWitP~gt~sr~~GiGv~f~d~e~g~~ 95 (117)
T COG3215 18 DMALLYSAYMPFLENGGLFVPTNKVYSIG-EEVFLLLELLD-FPEKLPVAGKVAWITPVGTQSRPAGIGVQFTDGENGLK 95 (117)
T ss_pred hHHHHHHHHhHHHhcCcEEcccCCccccc-hhhhhhhhhcC-chhhccccceEEEEccCCCCCCCCceeeeccCCCchhh
Confidence 44555666666789999999999999887 56666544432 4578999999865543221 1111 112235
Q ss_pred HHHHHHHHHhh
Q 019200 110 VRSCCEASLKR 120 (344)
Q Consensus 110 i~~~v~~SL~r 120 (344)
++++||.-|-.
T Consensus 96 vr~~IE~~Lg~ 106 (117)
T COG3215 96 VRNQIETLLGG 106 (117)
T ss_pred HHHHHHHHHHh
Confidence 77777776654
No 160
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=35.61 E-value=2.2e+02 Score=27.88 Aligned_cols=86 Identities=10% Similarity=0.082 Sum_probs=55.1
Q ss_pred EEEeccCCCCCCHHHHHHHHHHHHHcCccc-EEecCCCCHHHHHHHhhcCCceeeeccccccccchhhhHHHHHHHhCCc
Q 019200 128 LYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDIEEEIIPLCRELGIG 206 (344)
Q Consensus 128 l~~lH~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~ 206 (344)
+.++-.|-+..+..+-++.+.+|++...|- ..|=+.++...+..+++...++++|......--.....+.+.|+.+|+.
T Consensus 252 ~~~iEePv~~~d~~~~~~~la~Lr~~~~iPIa~dEs~~~~~~~~~li~~~avdi~~~d~~~gGIt~~~kIa~lA~a~Gi~ 331 (441)
T TIGR03247 252 LAYAEDPCGAEQGYSGREVMAEFRRATGLPTATNMIATDWRQMGHALQLQAVDIPLADPHFWTMQGSVRVAQMCHDWGLT 331 (441)
T ss_pred hceEeCCCCcccccchHHHHHHHHHhCCCCEEcCCccCCHHHHHHHHHhCCCCEEeccCCcchHHHHHHHHHHHHHcCCE
Confidence 345555543322112266777887765544 4455667888899988888888888876322111126799999999999
Q ss_pred EEecccC
Q 019200 207 IVPYSPL 213 (344)
Q Consensus 207 v~a~~pl 213 (344)
+..++..
T Consensus 332 v~~h~~~ 338 (441)
T TIGR03247 332 WGSHSNN 338 (441)
T ss_pred EEEeCCc
Confidence 8876543
No 161
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=35.48 E-value=2.4e+02 Score=26.65 Aligned_cols=120 Identities=13% Similarity=0.177 Sum_probs=74.0
Q ss_pred CCHHHHHHHHHHHHHc---CCCEEecccCcCCCchHHHHHHHHhcCCCCCeEEEecccccCCCCcccccCCChHHHHHHH
Q 019200 38 VSEEDGISMIKHAFSK---GITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCC 114 (344)
Q Consensus 38 ~~~~~~~~~l~~Al~~---Gin~~DtA~~Yg~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v 114 (344)
++.++..+++....+. =+-.+|..+..+.- .+ .+-+.+. ...-++|.+|+-... .....+.+.+-+
T Consensus 48 ~~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~-~~-~l~~~~~--~~piilV~NK~DLl~-------k~~~~~~~~~~l 116 (360)
T TIGR03597 48 LNDDDFLNLLNSLGDSNALIVYVVDIFDFEGSL-IP-ELKRFVG--GNPVLLVGNKIDLLP-------KSVNLSKIKEWM 116 (360)
T ss_pred CCHHHHHHHHhhcccCCcEEEEEEECcCCCCCc-cH-HHHHHhC--CCCEEEEEEchhhCC-------CCCCHHHHHHHH
Confidence 4666777777766532 23356754443321 12 2223332 345678999986532 123456666666
Q ss_pred HHHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecCCCCHHHH
Q 019200 115 EASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTI 169 (344)
Q Consensus 115 ~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l 169 (344)
.+.++.+|....+++.+..- ....++++++.|.++.+.+.|-.+|.+|..-..+
T Consensus 117 ~~~~k~~g~~~~~i~~vSAk-~g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStl 170 (360)
T TIGR03597 117 KKRAKELGLKPVDIILVSAK-KGNGIDELLDKIKKARNKKDVYVVGVTNVGKSSL 170 (360)
T ss_pred HHHHHHcCCCcCcEEEecCC-CCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH
Confidence 66677777654466665443 3446888999998887767899999999876543
No 162
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=35.31 E-value=2.4e+02 Score=27.63 Aligned_cols=60 Identities=17% Similarity=0.284 Sum_probs=38.1
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEEe-ccCC----------CCC-CHH---HHH-HHHHHHHHcCcccEEecCCCCH
Q 019200 105 GAPDYVRSCCEASLKRLDVDYIDLYYQ-HRVD----------TSV-PIE---ETI-GEMKKLVEEGKIKYIGLSEASP 166 (344)
Q Consensus 105 ~~~~~i~~~v~~SL~rLg~d~iDl~~l-H~~~----------~~~-~~~---~~~-~~L~~l~~~G~ir~iGvs~~~~ 166 (344)
-+.+.+.+.++..++ |+.++|.+|.+ +.|. ... +.+ +.+ .+.+.|.+.|. ..+++++|..
T Consensus 215 qt~e~~~~tl~~~~~-l~~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy-~~~~~~~fa~ 290 (455)
T TIGR00538 215 QTKESFAKTLEKVAE-LNPDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAGY-QFIGMDHFAK 290 (455)
T ss_pred CCHHHHHHHHHHHHh-cCCCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCCC-EEEeccceeC
Confidence 578889888886554 99999999977 2221 001 122 223 33455556675 6799999864
No 163
>PRK07328 histidinol-phosphatase; Provisional
Probab=35.08 E-value=3.3e+02 Score=24.36 Aligned_cols=109 Identities=16% Similarity=0.162 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHcCCCEEecccCcCC------------CchHHHHHHHHhcC--CC---CCeEEEecccccCCCCcccccC
Q 019200 42 DGISMIKHAFSKGITFFDTADVYGQ------------NANEVLLGKALKQL--PR---EKIQVATKFGIAGIGVAGVIVK 104 (344)
Q Consensus 42 ~~~~~l~~Al~~Gin~~DtA~~Yg~------------g~sE~~lG~~l~~~--~R---~~~~I~tK~~~~~~~~~~~~~~ 104 (344)
...+++++|.+.|+..+=.++|... +.+..-+-..+++. .+ .+ |--++|... +
T Consensus 19 ~~ee~v~~A~~~Gl~~i~~TdH~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~l~~~y~~--i~Il~GiE~--------~ 88 (269)
T PRK07328 19 TPEEYVQAARRAGLKEIGFTDHLPMYFLPPEWRDPGLAMRLEELPFYVSEVERLRARFPD--LYVRLGIEA--------D 88 (269)
T ss_pred CHHHHHHHHHHCCCCEEEEecCCCCCCcCcccccccccccHHHHHHHHHHHHHHHHHcCC--CeEEEEEEe--------c
Confidence 3689999999999998766655331 11112222233221 01 22 222333221 1
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEEeccCCCC-------------CCHHHHH----HHHHHHHHcCcccEEecC
Q 019200 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS-------------VPIEETI----GEMKKLVEEGKIKYIGLS 162 (344)
Q Consensus 105 ~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~-------------~~~~~~~----~~L~~l~~~G~ir~iGvs 162 (344)
+-+ .....+++.|++-..||+ |..+|+.+.. ...++.+ +.+.++.+.|.+.-+|=-
T Consensus 89 ~~~-~~~~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~ 161 (269)
T PRK07328 89 YHP-GTEEFLERLLEAYPFDYV-IGSVHYLGAWGFDNPDFVAEYEERDLDELYRRYFALVEQAARSGLFDIIGHP 161 (269)
T ss_pred ccC-CcHHHHHHHHHhCCCCeE-EEEEeecCCcCCCChhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCEeeCc
Confidence 111 133445666777777776 7888986421 1122333 346777788887776644
No 164
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=34.89 E-value=4.6e+02 Score=25.94 Aligned_cols=111 Identities=13% Similarity=0.086 Sum_probs=61.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEecccCcCCCch-HHHHHHHHhc-CCCCCeEEEecccccCCCCcccccCCChHHHHHHHHH
Q 019200 39 SEEDGISMIKHAFSKGITFFDTADVYGQNAN-EVLLGKALKQ-LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEA 116 (344)
Q Consensus 39 ~~~~~~~~l~~Al~~Gin~~DtA~~Yg~g~s-E~~lG~~l~~-~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~ 116 (344)
+.+-....++.|.++||..|=..++-.+-++ +..+. +.++ ...-.+.|+-... +..+.+++.+.+++
T Consensus 103 pddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~-~ak~~G~~~~~~i~yt~s----------p~~t~~y~~~~a~~ 171 (468)
T PRK12581 103 ADDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALR-AVKKTGKEAQLCIAYTTS----------PVHTLNYYLSLVKE 171 (468)
T ss_pred cchHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHH-HHHHcCCEEEEEEEEEeC----------CcCcHHHHHHHHHH
Confidence 4566788899999999998887765553222 22232 3332 1111122222221 23567777777665
Q ss_pred HHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecCCCC
Q 019200 117 SLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEAS 165 (344)
Q Consensus 117 SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~ 165 (344)
+..+|. |.+.|-+..-.....++.+.+..+++... .-||+=.|+
T Consensus 172 -l~~~Ga---d~I~IkDtaG~l~P~~v~~Lv~alk~~~~-~pi~~H~Hn 215 (468)
T PRK12581 172 -LVEMGA---DSICIKDMAGILTPKAAKELVSGIKAMTN-LPLIVHTHA 215 (468)
T ss_pred -HHHcCC---CEEEECCCCCCcCHHHHHHHHHHHHhccC-CeEEEEeCC
Confidence 456774 55555554444444556666666665443 246765443
No 165
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=34.87 E-value=46 Score=32.88 Aligned_cols=128 Identities=20% Similarity=0.213 Sum_probs=69.9
Q ss_pred HHHHHHHHHcCCCEEe--cccCcCC--------CchHHHHHHHHhc---CCCCCeEEEecccccCCCCc---------cc
Q 019200 44 ISMIKHAFSKGITFFD--TADVYGQ--------NANEVLLGKALKQ---LPREKIQVATKFGIAGIGVA---------GV 101 (344)
Q Consensus 44 ~~~l~~Al~~Gin~~D--tA~~Yg~--------g~sE~~lG~~l~~---~~R~~~~I~tK~~~~~~~~~---------~~ 101 (344)
.+-++...+.|++-+= ||-+|-- |--|.++..+-+. ..+-.+|+++-+|--....+ ..
T Consensus 105 ~e~f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~~g~~L~Gk~~lTaGLGGMgGAQplA~~m~g~v~l 184 (546)
T PF01175_consen 105 WEHFERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYETFLNAARKHFGGDLAGKLFLTAGLGGMGGAQPLAATMAGGVGL 184 (546)
T ss_dssp HHHHHHHHHTT---B-TTTTTTT---TTHHHHHHHHHHHHHHHHHHSTTS-TT-EEEEE--STTCCHHHHHHHHTT-EEE
T ss_pred HHHHHHHHhccchhhccccccceEEEcccceeehhhHHHHHHHHHhcCCCCcceEEEEecccccccchHHHHHhcCceEE
Confidence 4455666777887654 5544421 3234444433322 35678999998874332110 11
Q ss_pred ccCCChHHHHHHHHHHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhc---CCc
Q 019200 102 IVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV---HPI 178 (344)
Q Consensus 102 ~~~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~---~~~ 178 (344)
..+.+++.| -+|+.+.|+|.+. .++++.++..++.+++|+...||+-..-.+.++++.+. +.+
T Consensus 185 ~vEvd~~ri-------~kR~~~g~ld~~~-------~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~~i~pDl 250 (546)
T PF01175_consen 185 IVEVDPSRI-------EKRLEQGYLDEVT-------DDLDEALARAKEARAKKEPLSIGLLGNAADLWEELVERGIIPDL 250 (546)
T ss_dssp EEES-HHHH-------HHHHHTTSSSEEE-------SSHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHTT---SE
T ss_pred EEEECHHHH-------HHHHhCCCeeEEc-------CCHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHcCCCCCc
Confidence 223445444 4566678988553 56899999999999999999999998888888888776 234
Q ss_pred eeeeccc
Q 019200 179 TAVQMEW 185 (344)
Q Consensus 179 ~~~q~~~ 185 (344)
.+-|...
T Consensus 251 ~tDQTS~ 257 (546)
T PF01175_consen 251 VTDQTSA 257 (546)
T ss_dssp E---SST
T ss_pred ccCCCcc
Confidence 4446643
No 166
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=34.70 E-value=3.2e+02 Score=25.14 Aligned_cols=73 Identities=12% Similarity=-0.001 Sum_probs=48.8
Q ss_pred HHHHHHHHcCcc-cEEecCCCCHHHHHHHhhcCCceeeecccccccc-chhhhHHHHHHHhCCcEEecccCCccc
Q 019200 145 GEMKKLVEEGKI-KYIGLSEASPGTIRRAHAVHPITAVQMEWSLWTR-DIEEEIIPLCRELGIGIVPYSPLGRGF 217 (344)
Q Consensus 145 ~~L~~l~~~G~i-r~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~~~gi~v~a~~pl~~G~ 217 (344)
+.+..|.++-.+ -+.|=|-++.+.+.++++....+++|+.....-. .....+.+.|+.+||.++..+.+..|+
T Consensus 196 ~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~~~~d~i~ik~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~es~i 270 (307)
T TIGR01927 196 DEMSAFSEATGTAIALDESLWELPQLADEYGPGWRGALVIKPAIIGSPAKLRDLAQKAHRLGLQAVFSSVFESSI 270 (307)
T ss_pred HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhcCCCceEEECchhcCCHHHHHHHHHHHHHcCCCEEEECccchHH
Confidence 445555554322 2444455677888888877777888887665431 112679999999999999887776554
No 167
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=34.63 E-value=1.6e+02 Score=25.80 Aligned_cols=33 Identities=18% Similarity=0.235 Sum_probs=25.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEecccCcCCC
Q 019200 34 YSSPVSEEDGISMIKHAFSKGITFFDTADVYGQN 67 (344)
Q Consensus 34 ~~~~~~~~~~~~~l~~Al~~Gin~~DtA~~Yg~g 67 (344)
.|.. +.++..++++.|.+.||+-+=..++|-.|
T Consensus 14 DGp~-s~eesl~ml~~A~~qGvt~iVaTsHh~~g 46 (254)
T COG4464 14 DGPK-SLEESLAMLREAVRQGVTKIVATSHHLHG 46 (254)
T ss_pred CCCC-cHHHHHHHHHHHHHcCceEEeecccccCC
Confidence 3443 88999999999999999977666666544
No 168
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=34.50 E-value=3.3e+02 Score=26.42 Aligned_cols=61 Identities=10% Similarity=-0.087 Sum_probs=40.2
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEeccCCCC------C-CHH---HHH-HHHHHHHHcCcccEEecCCCCH
Q 019200 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS------V-PIE---ETI-GEMKKLVEEGKIKYIGLSEASP 166 (344)
Q Consensus 104 ~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~------~-~~~---~~~-~~L~~l~~~G~ir~iGvs~~~~ 166 (344)
.-+.+.+.+.++..+ +|+.++|.++.+.-.... . ..+ +.+ .+.+.|.+.|. +.+++++|..
T Consensus 204 ~qt~e~~~~~l~~~~-~l~~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy-~~yei~~far 275 (430)
T PRK08208 204 GQTHASWMESLDQAL-VYRPEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDLLLEAGY-TQTSMRMFRR 275 (430)
T ss_pred CCCHHHHHHHHHHHH-hCCCCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHHHHHcCC-eEEeecceec
Confidence 467888988888765 589999999987643211 0 111 223 34566677775 5699999864
No 169
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=34.14 E-value=3.5e+02 Score=24.36 Aligned_cols=131 Identities=15% Similarity=0.131 Sum_probs=76.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEec---ccCcCCC----chHHHHHHHHhcCCCC-CeEEEecccccCCCCcccccCCChHHH
Q 019200 39 SEEDGISMIKHAFSKGITFFDT---ADVYGQN----ANEVLLGKALKQLPRE-KIQVATKFGIAGIGVAGVIVKGAPDYV 110 (344)
Q Consensus 39 ~~~~~~~~l~~Al~~Gin~~Dt---A~~Yg~g----~sE~~lG~~l~~~~R~-~~~I~tK~~~~~~~~~~~~~~~~~~~i 110 (344)
+.++..+..+.+.+.|+..|+. +++...+ ...+.+.+.++..++. ++-|+.|++.. .+.+.+
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~----------~~~~~~ 178 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPY----------FDLEDI 178 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCC----------CCHHHH
Confidence 6678888899999999999995 3332221 2345556656542221 56688888643 344555
Q ss_pred HHHHHHHHhhcCCCceeEEEeccCCC-------------CC---C-----H-HHHHHHHHHHHHcC--cccEEecCCC-C
Q 019200 111 RSCCEASLKRLDVDYIDLYYQHRVDT-------------SV---P-----I-EETIGEMKKLVEEG--KIKYIGLSEA-S 165 (344)
Q Consensus 111 ~~~v~~SL~rLg~d~iDl~~lH~~~~-------------~~---~-----~-~~~~~~L~~l~~~G--~ir~iGvs~~-~ 165 (344)
.+-++ .++..|.|.| .+|.-.. .. . . .-.++.+.++++.= .+--||+... +
T Consensus 179 ~~~a~-~l~~~Gad~i---~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~ 254 (289)
T cd02810 179 VELAK-AAERAGADGL---TAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDS 254 (289)
T ss_pred HHHHH-HHHHcCCCEE---EEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCC
Confidence 55444 4667785544 4443210 00 0 0 12466677776653 5777777765 4
Q ss_pred HHHHHHHhhcCCceeeecc
Q 019200 166 PGTIRRAHAVHPITAVQME 184 (344)
Q Consensus 166 ~~~l~~~~~~~~~~~~q~~ 184 (344)
++.+.+++... .+.+|+-
T Consensus 255 ~~da~~~l~~G-Ad~V~vg 272 (289)
T cd02810 255 GEDVLEMLMAG-ASAVQVA 272 (289)
T ss_pred HHHHHHHHHcC-ccHheEc
Confidence 67777777644 5666663
No 170
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=33.52 E-value=1.7e+02 Score=21.33 Aligned_cols=68 Identities=13% Similarity=0.037 Sum_probs=41.0
Q ss_pred HHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcC-cccEEecCCC-CHHHHHHHhhcCCceeeeccccc
Q 019200 117 SLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG-KIKYIGLSEA-SPGTIRRAHAVHPITAVQMEWSL 187 (344)
Q Consensus 117 SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G-~ir~iGvs~~-~~~~l~~~~~~~~~~~~q~~~n~ 187 (344)
.++.++....|++++....+.....+ .++.+++.+ .++-|.+++. +.....++.+.+-..++.-+++.
T Consensus 35 ~~~~~~~~~~d~iiid~~~~~~~~~~---~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~~~ 104 (112)
T PF00072_consen 35 ALELLKKHPPDLIIIDLELPDGDGLE---LLEQIRQINPSIPIIVVTDEDDSDEVQEALRAGADDYLSKPFSP 104 (112)
T ss_dssp HHHHHHHSTESEEEEESSSSSSBHHH---HHHHHHHHTTTSEEEEEESSTSHHHHHHHHHTTESEEEESSSSH
T ss_pred HHHHhcccCceEEEEEeeeccccccc---cccccccccccccEEEecCCCCHHHHHHHHHCCCCEEEECCCCH
Confidence 34444444599999987655554444 444555555 7777777754 55666677766555555554443
No 171
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=33.23 E-value=2.2e+02 Score=23.17 Aligned_cols=57 Identities=21% Similarity=0.250 Sum_probs=40.8
Q ss_pred EEecCCCC--HHHHHHHhhcCCceeeeccccccccchhhhHHHHHHHhCCcEEecccCCcccC
Q 019200 158 YIGLSEAS--PGTIRRAHAVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFF 218 (344)
Q Consensus 158 ~iGvs~~~--~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G~L 218 (344)
-+|...|+ ...+..+.....|+++-. -+.+.+ .+.+..+-++++.++.-|.+.++.+
T Consensus 19 k~GlDgHd~gakvia~~l~d~GfeVi~~---g~~~tp-~e~v~aA~~~dv~vIgvSsl~g~h~ 77 (143)
T COG2185 19 KLGLDGHDRGAKVIARALADAGFEVINL---GLFQTP-EEAVRAAVEEDVDVIGVSSLDGGHL 77 (143)
T ss_pred ccCccccccchHHHHHHHHhCCceEEec---CCcCCH-HHHHHHHHhcCCCEEEEEeccchHH
Confidence 45666664 456777777777776544 344444 5788888999999999999987763
No 172
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=33.04 E-value=1.2e+02 Score=29.25 Aligned_cols=120 Identities=13% Similarity=0.171 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhc---CCceeeeccccccccchhhhHHHHHHHhC--CcEEecccCCcc
Q 019200 142 ETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV---HPITAVQMEWSLWTRDIEEEIIPLCRELG--IGIVPYSPLGRG 216 (344)
Q Consensus 142 ~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~---~~~~~~q~~~n~~~~~~~~~l~~~~~~~g--i~v~a~~pl~~G 216 (344)
.+++++.+..++++ ++.+++++.+...++. ..++++-+.+.+ .++.++..++.+ ++++.+ +|
T Consensus 122 PiYqa~~~~~~k~~----~~~~mt~d~~~~~ie~qa~~GVDfmTiHcGi-----~~~~~~~~~~~~R~~giVSR----GG 188 (431)
T PRK13352 122 PIYQAAVEAARKYG----SVVDMTEDDLFDVIEKQAKDGVDFMTIHCGV-----TRETLERLKKSGRIMGIVSR----GG 188 (431)
T ss_pred hHHHHHHHHHhcCC----ChhhCCHHHHHHHHHHHHHhCCCEEEEccch-----hHHHHHHHHhcCCccCeecC----CH
Confidence 35677777766555 7778888887776665 455666665555 245677777543 666654 23
Q ss_pred cCCCCCCCCCCCCCcccccccCccccchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEeecCCCCHHHHHHHH
Q 019200 217 FFGGKAVVENVPADSFLHFLPRFKGENLDRNKSIYFRIGNLAKKYNCTSAQLALAWVLGQGDDVVPIPGTTKMKNLDDNI 296 (344)
Q Consensus 217 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~v~~vi~G~~~~~~l~~nl 296 (344)
.+.-. ++- ....-+...+.++.|-+||++|+++++ |..+.-...|.-++..+|+.|.+
T Consensus 189 s~~~~-------------WM~--~n~~ENPlye~fD~lLeI~~~yDVtlS-------LGDglRPG~i~Da~D~aQi~El~ 246 (431)
T PRK13352 189 SFLAA-------------WML--HNNKENPLYEHFDYLLEILKEYDVTLS-------LGDGLRPGCIADATDRAQIQELI 246 (431)
T ss_pred HHHHH-------------HHH--HcCCcCchHHHHHHHHHHHHHhCeeee-------ccCCcCCCccccCCcHHHHHHHH
Confidence 32211 000 001113456677899999999988532 22222223455666777777655
No 173
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=32.99 E-value=4.1e+02 Score=24.74 Aligned_cols=94 Identities=15% Similarity=0.121 Sum_probs=48.7
Q ss_pred CCCeEEEecccccCCCCcccccCCChHHHHHHHHHHHhhcCCCceeEEEeccCC--CC--CCH--HHHHHHHHHHHHcCc
Q 019200 82 REKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVD--TS--VPI--EETIGEMKKLVEEGK 155 (344)
Q Consensus 82 R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~--~~--~~~--~~~~~~L~~l~~~G~ 155 (344)
.+++.|..|+....... ...+.+...+ +-+.|+..|+|+|+ +|... .. .+. ...++.++++++.=.
T Consensus 219 G~d~~v~vri~~~~~~~----~g~~~~e~~~-ia~~Le~~gvd~ie---v~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~ 290 (336)
T cd02932 219 PEDKPLFVRISATDWVE----GGWDLEDSVE-LAKALKELGVDLID---VSSGGNSPAQKIPVGPGYQVPFAERIRQEAG 290 (336)
T ss_pred CCCceEEEEEcccccCC----CCCCHHHHHH-HHHHHHHcCCCEEE---ECCCCCCcccccCCCccccHHHHHHHHhhCC
Confidence 34667778876432110 1133443332 22345667755554 33211 00 011 122455666666656
Q ss_pred ccEEecCCC-CHHHHHHHhhcCCceeeec
Q 019200 156 IKYIGLSEA-SPGTIRRAHAVHPITAVQM 183 (344)
Q Consensus 156 ir~iGvs~~-~~~~l~~~~~~~~~~~~q~ 183 (344)
|--++..+. +++..+++++....+.+++
T Consensus 291 iPVi~~G~i~t~~~a~~~l~~g~aD~V~~ 319 (336)
T cd02932 291 IPVIAVGLITDPEQAEAILESGRADLVAL 319 (336)
T ss_pred CCEEEeCCCCCHHHHHHHHHcCCCCeehh
Confidence 666666664 6777777777766666665
No 174
>PTZ00081 enolase; Provisional
Probab=32.69 E-value=3.7e+02 Score=26.34 Aligned_cols=97 Identities=13% Similarity=0.082 Sum_probs=67.0
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcC--cccEEecC--CCCHHHHHHHhhcCCcee
Q 019200 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG--KIKYIGLS--EASPGTIRRAHAVHPITA 180 (344)
Q Consensus 105 ~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G--~ir~iGvs--~~~~~~l~~~~~~~~~~~ 180 (344)
.+.+.+.+-+.+.++.++ ++++-.|-... -|+.+.+|.++= .+.-+|=- ..+++.+.+.++....++
T Consensus 281 ~s~~eli~~~~~~l~~y~-----I~~IEDPl~~~----D~eg~~~Lt~~lg~~i~IvgDE~~~tn~~~l~~~I~~~aad~ 351 (439)
T PTZ00081 281 LTGEELVELYLDLVKKYP-----IVSIEDPFDQD----DWEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEKKACNA 351 (439)
T ss_pred cCHHHHHHHHHHHHhcCC-----cEEEEcCCCcc----cHHHHHHHHHhhCCCceEEcCCcccCCHHHHHHHHHhCCCCE
Confidence 577777777767776654 56666665432 355666666543 55544442 356899999999888899
Q ss_pred eecccccccc-chhhhHHHHHHHhCCcEEec
Q 019200 181 VQMEWSLWTR-DIEEEIIPLCRELGIGIVPY 210 (344)
Q Consensus 181 ~q~~~n~~~~-~~~~~l~~~~~~~gi~v~a~ 210 (344)
+|+..|-.-. ....++...|+.+|+.++..
T Consensus 352 i~iKvnqiGGITe~l~~a~lA~~~Gi~~iis 382 (439)
T PTZ00081 352 LLLKVNQIGTVTEAIEAAKLAQKNGWGVMVS 382 (439)
T ss_pred EEeccccccCHHHHHHHHHHHHHcCCcEEEe
Confidence 9998886542 12267999999999998874
No 175
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=32.60 E-value=4.5e+02 Score=25.16 Aligned_cols=80 Identities=13% Similarity=0.065 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhc-CCceeeeccccccccchh-hhHHHHHHHhC-CcEEecccCCccc
Q 019200 141 EETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV-HPITAVQMEWSLWTRDIE-EEIIPLCRELG-IGIVPYSPLGRGF 217 (344)
Q Consensus 141 ~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~-~~l~~~~~~~g-i~v~a~~pl~~G~ 217 (344)
..+.+.++++....-|...=+...+.+.++++++. .+..+++.+-|+...-.+ ..+.+.|+++| +.++.=++++...
T Consensus 105 ~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp~ 184 (386)
T PF01053_consen 105 GGTYRLLEELLPRFGVEVTFVDPTDLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATPY 184 (386)
T ss_dssp HHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHTT
T ss_pred CcchhhhhhhhcccCcEEEEeCchhHHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeecccccee
Confidence 45666666655444444333344466777666653 445667788888765443 67999999999 9999988888776
Q ss_pred CCC
Q 019200 218 FGG 220 (344)
Q Consensus 218 L~~ 220 (344)
+..
T Consensus 185 ~~~ 187 (386)
T PF01053_consen 185 NQN 187 (386)
T ss_dssp TC-
T ss_pred eec
Confidence 543
No 176
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=31.98 E-value=6.5e+02 Score=26.81 Aligned_cols=96 Identities=14% Similarity=0.090 Sum_probs=54.3
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHc--CcccEEecCCCCHHHHHHHhhcCCceeee
Q 019200 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEE--GKIKYIGLSEASPGTIRRAHAVHPITAVQ 182 (344)
Q Consensus 105 ~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~--G~ir~iGvs~~~~~~l~~~~~~~~~~~~q 182 (344)
.+.+.|++-++.....-.....-+|+|+..+... .+.+++|.+..++ ..+++|-++|.....+..+.. -+.+
T Consensus 99 rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT--~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrS----RCq~ 172 (830)
T PRK07003 99 RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT--NHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLS----RCLQ 172 (830)
T ss_pred ccHHHHHHHHHHHHhccccCCceEEEEeChhhCC--HHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhh----heEE
Confidence 3455666666654433322345788888776554 3456666555555 589999999865443322222 3566
Q ss_pred ccccccccchh-hhHHHHHHHhCCc
Q 019200 183 MEWSLWTRDIE-EEIIPLCRELGIG 206 (344)
Q Consensus 183 ~~~n~~~~~~~-~~l~~~~~~~gi~ 206 (344)
+.|..+....- .-+...|++.||.
T Consensus 173 f~Fk~Ls~eeIv~~L~~Il~~EgI~ 197 (830)
T PRK07003 173 FNLKQMPAGHIVSHLERILGEERIA 197 (830)
T ss_pred EecCCcCHHHHHHHHHHHHHHcCCC
Confidence 77777655321 2344555555654
No 177
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=31.91 E-value=2.4e+02 Score=25.40 Aligned_cols=78 Identities=15% Similarity=0.096 Sum_probs=52.1
Q ss_pred CHH-HHHHHHHHHHHcCCCEEecccCcCC-CchH---HHHHHHHhcCC-CCCeEEEecccccCCCCcccccCCChHHHHH
Q 019200 39 SEE-DGISMIKHAFSKGITFFDTADVYGQ-NANE---VLLGKALKQLP-REKIQVATKFGIAGIGVAGVIVKGAPDYVRS 112 (344)
Q Consensus 39 ~~~-~~~~~l~~Al~~Gin~~DtA~~Yg~-g~sE---~~lG~~l~~~~-R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~ 112 (344)
+++ +...+.+.|.+.|..|+=|+..|+. |.+. +++-+.+++.. ..+ +--|..-. =.+.+....
T Consensus 144 ~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~~~~~~--vgIKAsGG---------Irt~~~A~~ 212 (257)
T PRK05283 144 KDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDMGVAKT--VGFKPAGG---------VRTAEDAAQ 212 (257)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhcccCCC--eeEEccCC---------CCCHHHHHH
Confidence 445 5888999999999999999999974 4433 33344443210 112 33343211 257788888
Q ss_pred HHHHHHhhcCCCcee
Q 019200 113 CCEASLKRLDVDYID 127 (344)
Q Consensus 113 ~v~~SL~rLg~d~iD 127 (344)
-++.--+.||.++++
T Consensus 213 ~i~ag~~~lg~~~~~ 227 (257)
T PRK05283 213 YLALADEILGADWAD 227 (257)
T ss_pred HHHHHHHHhChhhcC
Confidence 899999999988876
No 178
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=31.66 E-value=3.7e+02 Score=23.86 Aligned_cols=148 Identities=17% Similarity=0.207 Sum_probs=81.4
Q ss_pred HHHHHcCCCEEeccc-CcCC-Cc-hHHHHHHHHhcCCCCCeEEEecccccCCCCcccccCCChHHHHHHHHHHHhhcCCC
Q 019200 48 KHAFSKGITFFDTAD-VYGQ-NA-NEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVD 124 (344)
Q Consensus 48 ~~Al~~Gin~~DtA~-~Yg~-g~-sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~SL~rLg~d 124 (344)
..|++.|..+||.=+ .-|. |. ...++.+..+. -....-+|..+|=.. +.+..+..+....- .-|+|
T Consensus 14 ~~a~~~gaDiID~K~P~~GaLGA~~~~vi~~i~~~-~~~~~pvSAtiGDlp---------~~p~~~~~aa~~~a-~~Gvd 82 (235)
T PF04476_consen 14 EEALAGGADIIDLKNPAEGALGALFPWVIREIVAA-VPGRKPVSATIGDLP---------MKPGTASLAALGAA-ATGVD 82 (235)
T ss_pred HHHHhCCCCEEEccCCCCCCCCCCCHHHHHHHHHH-cCCCCceEEEecCCC---------CCchHHHHHHHHHH-hcCCC
Confidence 356788999999632 2221 22 34555544432 233466777776322 34555555544443 34888
Q ss_pred ceeEEEeccCCCCCCHHHHH----HHHHHHHHcCcccEEecCCCC------HHHHHHHhhcCCceeeecc------cccc
Q 019200 125 YIDLYYQHRVDTSVPIEETI----GEMKKLVEEGKIKYIGLSEAS------PGTIRRAHAVHPITAVQME------WSLW 188 (344)
Q Consensus 125 ~iDl~~lH~~~~~~~~~~~~----~~L~~l~~~G~ir~iGvs~~~------~~~l~~~~~~~~~~~~q~~------~n~~ 188 (344)
|+=+=+.-..+... ..+.+ +++.++-.+.++-.++.+.+. +..+-+......++.+++. -+++
T Consensus 83 yvKvGl~g~~~~~~-a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvMlDTa~Kdg~~L~ 161 (235)
T PF04476_consen 83 YVKVGLFGCKDYDE-AIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFDGVMLDTADKDGGSLF 161 (235)
T ss_pred EEEEecCCCCCHHH-HHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCCEEEEecccCCCCchh
Confidence 88887764433221 11222 223333334567888888873 4455555555566777663 2233
Q ss_pred cc---chhhhHHHHHHHhCCcE
Q 019200 189 TR---DIEEEIIPLCRELGIGI 207 (344)
Q Consensus 189 ~~---~~~~~l~~~~~~~gi~v 207 (344)
+. ....+.++.|+++|+.+
T Consensus 162 d~~~~~~L~~Fv~~ar~~gL~~ 183 (235)
T PF04476_consen 162 DHLSEEELAEFVAQARAHGLMC 183 (235)
T ss_pred hcCCHHHHHHHHHHHHHccchh
Confidence 22 22256888888888766
No 179
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=31.50 E-value=3.9e+02 Score=26.50 Aligned_cols=125 Identities=13% Similarity=0.026 Sum_probs=72.2
Q ss_pred CceeEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhcCCceeeecccccccc-------------
Q 019200 124 DYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWTR------------- 190 (344)
Q Consensus 124 d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~------------- 190 (344)
.-.|+++.--|+.......++..+..+...+.|-.-..|..+...+.+.+......++-.++|+...
T Consensus 79 ~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~Lvevv~g~~t~ 158 (495)
T PRK07531 79 AGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTS 158 (495)
T ss_pred cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCcccCceEEEcCCCCCC
Confidence 3468888877766443456677777777777664444555667777665544333344455554321
Q ss_pred -chhhhHHHHHHHhCCcEEecccCCcccCCCCCCCCCCCCCcccccccCccccchhhhHHH-HHHHHHHHHHcCCCHHHH
Q 019200 191 -DIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSFLHFLPRFKGENLDRNKSI-YFRIGNLAKKYNCTSAQL 268 (344)
Q Consensus 191 -~~~~~l~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~la~~~~~s~~ql 268 (344)
.....+.++++..|...+.......|++. +..+.. +.+.-.++++.++++.++
T Consensus 159 ~e~~~~~~~~~~~lG~~~v~~~k~~~gfi~-------------------------nrl~~a~~~EA~~L~~~g~~s~~~i 213 (495)
T PRK07531 159 PETIRRAKEILREIGMKPVHIAKEIDAFVG-------------------------DRLLEALWREALWLVKDGIATTEEI 213 (495)
T ss_pred HHHHHHHHHHHHHcCCEEEeecCCCcchhH-------------------------HHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 11134556666666555544433333332 333444 466777888899998887
Q ss_pred HHHHH
Q 019200 269 ALAWV 273 (344)
Q Consensus 269 al~~~ 273 (344)
--...
T Consensus 214 d~~~~ 218 (495)
T PRK07531 214 DDVIR 218 (495)
T ss_pred HHHHh
Confidence 64443
No 180
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=31.05 E-value=2.6e+02 Score=26.45 Aligned_cols=106 Identities=8% Similarity=0.089 Sum_probs=0.0
Q ss_pred HHHhhcCCCceeEEEeccCCCCCC-----------HHHHHHHHHHHHHcCcccEE-------ecCC--CCHHHHHHHhhc
Q 019200 116 ASLKRLDVDYIDLYYQHRVDTSVP-----------IEETIGEMKKLVEEGKIKYI-------GLSE--ASPGTIRRAHAV 175 (344)
Q Consensus 116 ~SL~rLg~d~iDl~~lH~~~~~~~-----------~~~~~~~L~~l~~~G~ir~i-------Gvs~--~~~~~l~~~~~~ 175 (344)
..|...+++..-.+.||.+++... ++++++++.++.++...+-+ |+.. -....+.+++..
T Consensus 206 ~~l~~~~l~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~ 285 (355)
T TIGR00048 206 DILADKMLQVALAISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKG 285 (355)
T ss_pred HHHHHhCCCcEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhc
Q ss_pred CCceeeeccccccccchh--------hhHHHHHHHhCCcEEecccCCcccCCCC
Q 019200 176 HPITAVQMEWSLWTRDIE--------EEIIPLCRELGIGIVPYSPLGRGFFGGK 221 (344)
Q Consensus 176 ~~~~~~q~~~n~~~~~~~--------~~l~~~~~~~gi~v~a~~pl~~G~L~~~ 221 (344)
.++.++-++||.+....- ....++.+++|+.+......+..+....
T Consensus 286 l~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~~~G~di~aaC 339 (355)
T TIGR00048 286 TKCKVNLIPWNPFPEADYERPSNEQIDRFAKTLMSYGFTVTIRKSRGDDIDAAC 339 (355)
T ss_pred CCCceEEEecccCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCcchhhcC
No 181
>TIGR00035 asp_race aspartate racemase.
Probab=30.90 E-value=2.1e+02 Score=24.99 Aligned_cols=65 Identities=14% Similarity=0.083 Sum_probs=46.6
Q ss_pred cCCChHHHHHHHHHHHhhcCCCceeEEEeccCCCC------------CCHHHHHHHHHHHHHcCcccEEecCCCCHHH
Q 019200 103 VKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS------------VPIEETIGEMKKLVEEGKIKYIGLSEASPGT 168 (344)
Q Consensus 103 ~~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~------------~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~ 168 (344)
+.-+.+++++-++..-.+.+-++++.+.+++|+.. .....+.+.++.|.+.| +.+|.++-.++..
T Consensus 12 p~at~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g-~d~iviaCNTah~ 88 (229)
T TIGR00035 12 PLATAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAG-ADFIIMPCNTAHK 88 (229)
T ss_pred HHHHHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcC-CCEEEECCccHHH
Confidence 34566778877788778888899999999998531 12234667777776655 7888887766655
No 182
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=30.62 E-value=2.5e+02 Score=30.20 Aligned_cols=72 Identities=14% Similarity=0.051 Sum_probs=56.3
Q ss_pred CCChHHHHHHHHHHHhhcCC--------------------------CceeEEEeccCCCCCC---HHHHHHHHHHHHHcC
Q 019200 104 KGAPDYVRSCCEASLKRLDV--------------------------DYIDLYYQHRVDTSVP---IEETIGEMKKLVEEG 154 (344)
Q Consensus 104 ~~~~~~i~~~v~~SL~rLg~--------------------------d~iDl~~lH~~~~~~~---~~~~~~~L~~l~~~G 154 (344)
......+.+.++.+|+.++. ....+++|..|....+ -..+|+.+.++++.|
T Consensus 669 G~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g 748 (885)
T KOG0059|consen 669 GLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNG 748 (885)
T ss_pred CCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 35667888889999988774 2356777777754332 357999999999999
Q ss_pred cccEEecCCCCHHHHHHHhhcCC
Q 019200 155 KIKYIGLSEASPGTIRRAHAVHP 177 (344)
Q Consensus 155 ~ir~iGvs~~~~~~l~~~~~~~~ 177 (344)
+ ++=+++|+.++.+.++..-.
T Consensus 749 ~--aiiLTSHsMeE~EaLCtR~a 769 (885)
T KOG0059|consen 749 K--AIILTSHSMEEAEALCTRTA 769 (885)
T ss_pred C--EEEEEcCCHHHHHHHhhhhh
Confidence 9 99999999999998887643
No 183
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=30.55 E-value=3.4e+02 Score=26.51 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=15.1
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEEe
Q 019200 105 GAPDYVRSCCEASLKRLDVDYIDLYYQ 131 (344)
Q Consensus 105 ~~~~~i~~~v~~SL~rLg~d~iDl~~l 131 (344)
-+.+.+++.++..+ .++.+++.++.+
T Consensus 215 qt~e~~~~~l~~~~-~l~~~~i~~y~l 240 (453)
T PRK09249 215 QTPESFARTLEKVL-ELRPDRLAVFNY 240 (453)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEEccC
Confidence 45566666665444 366666666654
No 184
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=30.54 E-value=4.3e+02 Score=24.26 Aligned_cols=186 Identities=16% Similarity=0.150 Sum_probs=91.5
Q ss_pred CCccccccccccccCCCCCC-CCCCHHHHHHHHHHHH-HcCCCEEecccCcCCCc---hHHHHHHHHhcC--CCCCeEEE
Q 019200 16 QGLEVSKLGYGCMNLSGGYS-SPVSEEDGISMIKHAF-SKGITFFDTADVYGQNA---NEVLLGKALKQL--PREKIQVA 88 (344)
Q Consensus 16 tg~~vs~lglG~~~~~~~~~-~~~~~~~~~~~l~~Al-~~Gin~~DtA~~Yg~g~---sE~~lG~~l~~~--~R~~~~I~ 88 (344)
.|.+| .|.||.|..+. +. ...+.++..+.+...+ ..|++.+|----|+.-. +-..+-++|+.. .+..+.|+
T Consensus 66 ~G~kV-iiS~GG~~g~~-~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq~~~p~l~vs 143 (294)
T cd06543 66 AGGDV-IVSFGGASGTP-LATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQKEYPDLKIS 143 (294)
T ss_pred cCCeE-EEEecCCCCCc-cccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHHHHCCCcEEE
Confidence 44554 56777776432 22 1224455555555555 46999999766555311 124455555542 23356666
Q ss_pred ecccccCCCCcccccCCChHHHHHHHHHHHhhcC--CCceeEEEeccCCC--CCC-HHHHHHHHHHHHHcCcccEEecCC
Q 019200 89 TKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLD--VDYIDLYYQHRVDT--SVP-IEETIGEMKKLVEEGKIKYIGLSE 163 (344)
Q Consensus 89 tK~~~~~~~~~~~~~~~~~~~i~~~v~~SL~rLg--~d~iDl~~lH~~~~--~~~-~~~~~~~L~~l~~~G~ir~iGvs~ 163 (344)
.-+..... .++.+.+ .+-++.+.-| +++|-++-+..-.. ..+ .+.+..+.+.++.+=+--+=+.
T Consensus 144 ~Tlp~~p~-------gl~~~g~--~~l~~a~~~Gv~~d~VNiMtmDyg~~~~~~~mg~~a~~aa~~~~~ql~~~~~~~-- 212 (294)
T cd06543 144 FTLPVLPT-------GLTPDGL--NVLEAAAANGVDLDTVNIMTMDYGSSAGSQDMGAAAISAAESLHDQLKDLYPKL-- 212 (294)
T ss_pred EecCCCCC-------CCChhHH--HHHHHHHHcCCCcceeeeeeecCCCCCCcccHHHHHHHHHHHHHHHHHHHccCC--
Confidence 55542221 1232222 2333444555 35666655543222 222 3455666666665433222223
Q ss_pred CCHHHHHHHhhcCCceeeeccc--cccccchhhhHHHHHHHhCCcEEecccCCcc
Q 019200 164 ASPGTIRRAHAVHPITAVQMEW--SLWTRDIEEEIIPLCRELGIGIVPYSPLGRG 216 (344)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~q~~~--n~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G 216 (344)
+..++-.-+...| .+=+... -++.....+.+.++++++||+.+.+-.+...
T Consensus 213 -s~~~~~~~ig~Tp-MiG~nD~~~e~ft~~da~~~~~fA~~~~l~~~s~Ws~~RD 265 (294)
T cd06543 213 -SDAELWAMIGVTP-MIGVNDVGSEVFTLADAQTLVDFAKEKGLGRLSMWSLNRD 265 (294)
T ss_pred -CHHHHHHHccccc-cccccCCCCceeeHHHHHHHHHHHHhCCCCeEeeeeccCC
Confidence 3333333333322 1111111 1233333368999999999999998877643
No 185
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=30.51 E-value=3.4e+02 Score=23.10 Aligned_cols=102 Identities=17% Similarity=0.188 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHHhhcCCCceeEE-EeccCCCCCCHHHHHHHHHHHHHcCcccEEecCCCCH--HHHHHHhhcCCceeeec
Q 019200 107 PDYVRSCCEASLKRLDVDYIDLY-YQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASP--GTIRRAHAVHPITAVQM 183 (344)
Q Consensus 107 ~~~i~~~v~~SL~rLg~d~iDl~-~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~--~~l~~~~~~~~~~~~q~ 183 (344)
.+.....+...+++.+...-.++ .+...........+.+.++.|++.|- .+++.++.. ..+..+.. .+++.+=+
T Consensus 97 ~~~~~~~~~~~l~~~~~~~~~l~iei~e~~~~~~~~~~~~~~~~l~~~G~--~l~ld~~g~~~~~~~~l~~-~~~d~iKl 173 (240)
T cd01948 97 DPDFLDRLLELLAETGLPPRRLVLEITESALIDDLEEALATLRRLRALGV--RIALDDFGTGYSSLSYLKR-LPVDYLKI 173 (240)
T ss_pred CcHHHHHHHHHHHHcCCCHHHEEEEEecchhhCCHHHHHHHHHHHHHCCC--eEEEeCCCCcHhhHHHHHh-CCCCEEEE
Confidence 34456777788888876542232 22222333345568899999999998 677776543 33333333 34566555
Q ss_pred ccccccc--------chhhhHHHHHHHhCCcEEecc
Q 019200 184 EWSLWTR--------DIEEEIIPLCRELGIGIVPYS 211 (344)
Q Consensus 184 ~~n~~~~--------~~~~~l~~~~~~~gi~v~a~~ 211 (344)
..+.+.. ..-..++..|+..|+.+++-+
T Consensus 174 d~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~g 209 (240)
T cd01948 174 DRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAEG 209 (240)
T ss_pred CHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEEe
Confidence 5443322 112578999999999999853
No 186
>PLN02522 ATP citrate (pro-S)-lyase
Probab=30.49 E-value=87 Score=32.00 Aligned_cols=85 Identities=24% Similarity=0.050 Sum_probs=47.5
Q ss_pred CchHHHHHHHHhcCCCCCeEEEecccccCC---CCcccccC---C-ChHHHHHHHHHHHhhcCCCceeEEEeccCCCCCC
Q 019200 67 NANEVLLGKALKQLPREKIQVATKFGIAGI---GVAGVIVK---G-APDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVP 139 (344)
Q Consensus 67 g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~---~~~~~~~~---~-~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~~ 139 (344)
|..|+-+-+++++..+.+.+|+-|.|.... ......+. . +....-+..+..|++-|+-.+| +.+.-
T Consensus 234 g~~e~~f~ea~~~a~~~KPVVa~kaGrsa~~~~~~aa~gHtGAiag~~~~ta~~k~aAlr~aGv~vv~-------s~~El 306 (608)
T PLN02522 234 GRDEYSLVEALKQGKVSKPVVAWVSGTCARLFKSEVQFGHAGAKSGGDMESAQAKNKALKDAGAIVPT-------SFEAL 306 (608)
T ss_pred chhHHHHHHHHHHhcCCCCEEEEeccCCCccCccccccccccccccCCCccHHHHHHHHHHCCCeEeC-------CHHHH
Confidence 457788888888655889999999987652 11000010 0 1112224556777777754433 11111
Q ss_pred HHHHHHHHHHHHHcCcccE
Q 019200 140 IEETIGEMKKLVEEGKIKY 158 (344)
Q Consensus 140 ~~~~~~~L~~l~~~G~ir~ 158 (344)
.+-+.+.|++|+.+|.|.-
T Consensus 307 ~~~~~~~~~~~~~~~~~~~ 325 (608)
T PLN02522 307 EAAIKETFEKLVEEGKIIP 325 (608)
T ss_pred HHHHHHHHHHHHhCCceee
Confidence 2233456777777777654
No 187
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=30.40 E-value=2.7e+02 Score=22.15 Aligned_cols=62 Identities=19% Similarity=0.232 Sum_probs=42.8
Q ss_pred CCCCeEEEecccccCCCCcccccCCChHHHHHHHHHHHhhcCC----CceeEEEeccCCC-CCCHHHHHHHHHHHHH
Q 019200 81 PREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDV----DYIDLYYQHRVDT-SVPIEETIGEMKKLVE 152 (344)
Q Consensus 81 ~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~SL~rLg~----d~iDl~~lH~~~~-~~~~~~~~~~L~~l~~ 152 (344)
.|=-+.|+-|+|. ...++.|++.+.+++..+.. ...|++++-.+.. +.+..++-+.|+.+.+
T Consensus 47 ~RvG~~VSKKvG~----------AV~RNRiKR~lRE~fR~~~~~~~~~g~DiVivar~~~~~~~~~~l~~~L~~~l~ 113 (129)
T PRK01313 47 PRVGFTVTKKNGN----------AVERNRIRRRLKEAVRLHAGFDMAPGTDYVIVARRDALNAPFSQLTEELSRRIE 113 (129)
T ss_pred cEEEEEEecccCc----------chHHHHHHHHHHHHHHHhchhccCCCceEEEEECcccccCCHHHHHHHHHHHHH
Confidence 3445666667652 25678888888888887643 4579999999874 4566677777766654
No 188
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=30.29 E-value=4.7e+02 Score=24.61 Aligned_cols=95 Identities=16% Similarity=0.089 Sum_probs=61.0
Q ss_pred CCCCeEEEecccccCCC------CcccccCCChHHHHHHHHHHHhhcCC--CceeEEEecc-CCCCCCHHHHHHHHHHHH
Q 019200 81 PREKIQVATKFGIAGIG------VAGVIVKGAPDYVRSCCEASLKRLDV--DYIDLYYQHR-VDTSVPIEETIGEMKKLV 151 (344)
Q Consensus 81 ~R~~~~I~tK~~~~~~~------~~~~~~~~~~~~i~~~v~~SL~rLg~--d~iDl~~lH~-~~~~~~~~~~~~~L~~l~ 151 (344)
.|..+.|+|-.|....- ..+...+.+.+.|..++......+|+ ..++-+.+-. =++....+.+++++..+.
T Consensus 91 ~~~t~cvSsq~GC~l~C~fC~tg~~g~~r~Lt~~EI~~qv~~~~~~~g~~~~~i~~Vvf~GmGEPlln~~~v~~~i~~l~ 170 (343)
T PRK14468 91 DRKTICVSTMVGCPAGCAFCATGAMGFGRNLTAAEILDQVLAVAGHEGISPREIRNVVLMGMGEPLLNYENVLKAARIML 170 (343)
T ss_pred CCCEEEEEecCCCCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhcCcCcCCccEEEEeccCccccCHHHHHHHHHHhc
Confidence 36667777776643321 11235678999999999877766664 2456555554 456667788999999884
Q ss_pred H-cCc---ccEEecCCCC-HHHHHHHhhc
Q 019200 152 E-EGK---IKYIGLSEAS-PGTIRRAHAV 175 (344)
Q Consensus 152 ~-~G~---ir~iGvs~~~-~~~l~~~~~~ 175 (344)
+ .|. .+.+.+|+.. +..++++.+.
T Consensus 171 ~~~g~~l~~r~itvST~G~~~~i~~L~~~ 199 (343)
T PRK14468 171 HPQALAMSPRRVTLSTVGIPKGIRRLAEE 199 (343)
T ss_pred ccccccccCceEEEECCCChHHHHHHHHh
Confidence 4 453 2578887763 4456666653
No 189
>COG2055 Malate/L-lactate dehydrogenases [Energy production and conversion]
Probab=30.23 E-value=3e+02 Score=25.98 Aligned_cols=88 Identities=15% Similarity=0.122 Sum_probs=50.6
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhc--------
Q 019200 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV-------- 175 (344)
Q Consensus 104 ~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~-------- 175 (344)
..+++.+++-+++.|.+.|+.. +..+...+..-.+- .-|+.+|...++...++.
T Consensus 5 ~~~~e~L~~~~~~vl~~~G~~e----------------e~A~~vA~~lv~ad--~~G~~SHGv~r~p~yi~~l~~G~i~~ 66 (349)
T COG2055 5 KVSAEELKALIEEVLRKAGVPE----------------EDARAVADVLVAAD--LRGVDSHGVGRLPGYVRRLKAGKINP 66 (349)
T ss_pred EecHHHHHHHHHHHHHHcCCCH----------------HHHHHHHHHHHHHH--hcCCcccchHHHHHHHHHHHcCCcCC
Confidence 4688999999999999999753 22222222222222 356777777666555443
Q ss_pred -CCceee-------ecccccc--cc---chhhhHHHHHHHhCCcEEe
Q 019200 176 -HPITAV-------QMEWSLW--TR---DIEEEIIPLCRELGIGIVP 209 (344)
Q Consensus 176 -~~~~~~-------q~~~n~~--~~---~~~~~l~~~~~~~gi~v~a 209 (344)
..+.++ ++.-+-- +. ..-...++.|+++||++++
T Consensus 67 ~a~~~i~~~~~a~~~iDa~~g~G~~a~~~am~~aie~Ak~~Gia~va 113 (349)
T COG2055 67 DAEPEIVREAPAVAVLDADGGFGQVAAKKAMELAIEKAKQHGIAAVA 113 (349)
T ss_pred CCceEEEeecCcEEEEeCCCCcchHHHHHHHHHHHHHHHHhCeeEEE
Confidence 112222 2211100 00 0115689999999999986
No 190
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=30.17 E-value=4.2e+02 Score=24.08 Aligned_cols=157 Identities=12% Similarity=0.181 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHcCCCEEecccCcCCCchHHHHH--HHHhcCCCCCeEEEecccccCCCCcccccCCChHHHHHHHHHHH
Q 019200 41 EDGISMIKHAFSKGITFFDTADVYGQNANEVLLG--KALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASL 118 (344)
Q Consensus 41 ~~~~~~l~~Al~~Gin~~DtA~~Yg~g~sE~~lG--~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~SL 118 (344)
+...+.++.-.+.+..|+..+..=|.+..+..+. ..|++.. .+-...-+. ..+.++..++..+...
T Consensus 16 ~~~~~~~~~l~~~~p~fvsvT~~~~~~~~~~t~~~~~~l~~~~--g~~~i~Hlt---------cr~~~~~~l~~~L~~~- 83 (281)
T TIGR00677 16 QNLYERMDRMVASGPLFIDITWGAGGTTAELTLTIASRAQNVV--GVETCMHLT---------CTNMPIEMIDDALERA- 83 (281)
T ss_pred HHHHHHHHHHhhCCCCEEEeccCCCCcchhhHHHHHHHHHHhc--CCCeeEEec---------cCCCCHHHHHHHHHHH-
Confidence 4456666666788999999875443323344333 3343210 121111111 1235666777666654
Q ss_pred hhcCCCceeEEEeccCC---------CCCCHHHHHHHHHHHHHc-CcccEEecCCCCH--------H-HHHHHhhc----
Q 019200 119 KRLDVDYIDLYYQHRVD---------TSVPIEETIGEMKKLVEE-GKIKYIGLSEASP--------G-TIRRAHAV---- 175 (344)
Q Consensus 119 ~rLg~d~iDl~~lH~~~---------~~~~~~~~~~~L~~l~~~-G~ir~iGvs~~~~--------~-~l~~~~~~---- 175 (344)
..+|++ .++.|-... .....+...+.++.+++. |..-+||+..++- + .+..+.+.
T Consensus 84 ~~~Gi~--niLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~~~f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aG 161 (281)
T TIGR00677 84 YSNGIQ--NILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSKYGDYFCIGVAGYPEGHPEAESVELDLKYLKEKVDAG 161 (281)
T ss_pred HHCCCC--EEEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCceEEEEEECCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 788876 344443321 112234455566666554 4446899987641 1 23333332
Q ss_pred CCceeeeccccccccchhhhHHHHHHHhCCcEEecccCCcccC
Q 019200 176 HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFF 218 (344)
Q Consensus 176 ~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G~L 218 (344)
..+-+-|+-|+. +.-...++.|++.|+.+ |+--|++
T Consensus 162 A~f~iTQ~~Fd~---~~~~~f~~~~~~~gi~~----PIi~GI~ 197 (281)
T TIGR00677 162 ADFIITQLFYDV---DNFLKFVNDCRAIGIDC----PIVPGIM 197 (281)
T ss_pred CCEeeccceecH---HHHHHHHHHHHHcCCCC----CEEeecc
Confidence 446667776665 22257888899987654 4444554
No 191
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=30.07 E-value=2.6e+02 Score=21.80 Aligned_cols=49 Identities=16% Similarity=0.166 Sum_probs=36.2
Q ss_pred CChHHHHHHHHHHHhhcCC---CceeEEEeccCCC-CCCHHHHHHHHHHHHHc
Q 019200 105 GAPDYVRSCCEASLKRLDV---DYIDLYYQHRVDT-SVPIEETIGEMKKLVEE 153 (344)
Q Consensus 105 ~~~~~i~~~v~~SL~rLg~---d~iDl~~lH~~~~-~~~~~~~~~~L~~l~~~ 153 (344)
..++.|++.+.+.+..+.. ...|++++-.+.. ..+..++.+.|..|.++
T Consensus 62 V~RNriKR~lRe~~R~~~~~l~~g~diVvi~r~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03031 62 VVRNRIKRQIRAALRQLLPRIAPGWDLVIIVKPTAAECNYEQFLQELEQLLIQ 114 (122)
T ss_pred hhhhHHHHHHHHHHHHhhhccCCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 5677788888888876642 3579999998874 45777888888777665
No 192
>PRK15108 biotin synthase; Provisional
Probab=29.95 E-value=4.7e+02 Score=24.55 Aligned_cols=108 Identities=11% Similarity=0.030 Sum_probs=61.9
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEEeccCCC-CCCHHHHHHHHHHHHHcCcccEEecCC--CCHHHHHHHhhcCC----
Q 019200 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDT-SVPIEETIGEMKKLVEEGKIKYIGLSE--ASPGTIRRAHAVHP---- 177 (344)
Q Consensus 105 ~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~-~~~~~~~~~~L~~l~~~G~ir~iGvs~--~~~~~l~~~~~~~~---- 177 (344)
.+++.|.+.+.. ...+|+..+-+ ...+.++ ...++.+.+.++.+++.|. .+.+|+ .+.+.++++.+.+-
T Consensus 76 ls~eEI~~~a~~-~~~~G~~~i~i-~~~g~~p~~~~~e~i~~~i~~ik~~~i--~v~~s~G~ls~e~l~~LkeAGld~~n 151 (345)
T PRK15108 76 MEVEQVLESARK-AKAAGSTRFCM-GAAWKNPHERDMPYLEQMVQGVKAMGL--ETCMTLGTLSESQAQRLANAGLDYYN 151 (345)
T ss_pred CCHHHHHHHHHH-HHHcCCCEEEE-EecCCCCCcchHHHHHHHHHHHHhCCC--EEEEeCCcCCHHHHHHHHHcCCCEEe
Confidence 688899888875 56789988833 3333232 3456777788888887765 343444 56777777755411
Q ss_pred --ceeeecccccc-c-cch--hhhHHHHHHHhCCcEEecccCCcc
Q 019200 178 --ITAVQMEWSLW-T-RDI--EEEIIPLCRELGIGIVPYSPLGRG 216 (344)
Q Consensus 178 --~~~~q~~~n~~-~-~~~--~~~l~~~~~~~gi~v~a~~pl~~G 216 (344)
++...-.|.-+ . ... ..+.++.+++.|+.+.+...++.|
T Consensus 152 ~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~Glg 196 (345)
T PRK15108 152 HNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLG 196 (345)
T ss_pred eccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCC
Confidence 11111111111 1 111 146788888889877655444433
No 193
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=29.64 E-value=4.4e+02 Score=24.63 Aligned_cols=72 Identities=11% Similarity=0.124 Sum_probs=50.0
Q ss_pred HHHHHHHHHcCccc-EEecCCCCHHHHHHHhhcCCceeeeccccccccchhhhHHHHHHHhCCcEEecccCCccc
Q 019200 144 IGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGF 217 (344)
Q Consensus 144 ~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G~ 217 (344)
++.+.+|+++-.+. +.|=|-++.+.+.+++.....+++|+..+.+-. . .++++.|+++||.++..+.+..++
T Consensus 173 ~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~~a~dvi~ik~~~~GG-i-t~~lkiA~~~gi~v~v~s~~es~i 245 (327)
T PRK02901 173 VEELAELRRRVGVPIAADESIRRAEDPLRVARAGAADVAVLKVAPLGG-V-RAALDIAEQIGLPVVVSSALDTSV 245 (327)
T ss_pred HHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCcchhCC-H-HHHHHHHHHcCCcEEEeCCcccHH
Confidence 45666666553333 334345677888888888888999998776543 2 467789999999999887776543
No 194
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=29.61 E-value=2.7e+02 Score=21.69 Aligned_cols=49 Identities=8% Similarity=0.179 Sum_probs=33.2
Q ss_pred CChHHHHHHHHHHHhhcCC--CceeEEEeccCCC-CCCHHHHHHHHHHHHHc
Q 019200 105 GAPDYVRSCCEASLKRLDV--DYIDLYYQHRVDT-SVPIEETIGEMKKLVEE 153 (344)
Q Consensus 105 ~~~~~i~~~v~~SL~rLg~--d~iDl~~lH~~~~-~~~~~~~~~~L~~l~~~ 153 (344)
..++.|++.+.++++.... ...|++++..+.. ..+..++.+.|..|.+.
T Consensus 59 V~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~~~~~~~~l~~~l~~ll~k 110 (120)
T PRK04390 59 VERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKFDRATAKQAVAELAQLMAK 110 (120)
T ss_pred hhhhHHHHHHHHHHHhccccCCCceEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 5677788888887765432 3469999998864 34666666666666543
No 195
>PLN02540 methylenetetrahydrofolate reductase
Probab=29.61 E-value=6.2e+02 Score=25.77 Aligned_cols=152 Identities=13% Similarity=0.142 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHcCCCEEecccCcCCCchHHHHHHHH--hcCCCCCeEEEecccccCCCCcccccCCChHHHHHHHHHHH
Q 019200 41 EDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKAL--KQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASL 118 (344)
Q Consensus 41 ~~~~~~l~~Al~~Gin~~DtA~~Yg~g~sE~~lG~~l--~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~SL 118 (344)
+...+.+++-.+.|-.|+|.+..=|..-++..+.-+. ++...=+++..-- ..+.++..+...+.+.
T Consensus 15 ~nL~~~~~rl~~~~P~FisVT~gAgGst~~~Tl~la~~lq~~~Gie~i~HLT-----------Crd~n~~~L~~~L~~a- 82 (565)
T PLN02540 15 DNLFERMDRMVAHGPLFCDITWGAGGSTADLTLDIANRMQNMICVETMMHLT-----------CTNMPVEKIDHALETI- 82 (565)
T ss_pred HHHHHHHHHHhccCCCEEEeCCCCCCCcHHHHHHHHHHHHHhcCCCeeEEee-----------ecCCCHHHHHHHHHHH-
Confidence 3445556666688999999875555444555554332 2210112221111 1246677787777755
Q ss_pred hhcCCCceeEEEeccCCCC---------CCHHHHHHHHHHHHHc-CcccEEecCCCCH------------------HHHH
Q 019200 119 KRLDVDYIDLYYQHRVDTS---------VPIEETIGEMKKLVEE-GKIKYIGLSEASP------------------GTIR 170 (344)
Q Consensus 119 ~rLg~d~iDl~~lH~~~~~---------~~~~~~~~~L~~l~~~-G~ir~iGvs~~~~------------------~~l~ 170 (344)
..+|+. .++.|....+. .....+.+-++.+++. |....|||+.++. ..+.
T Consensus 83 ~~~GIr--NILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~~~gd~f~IgVAGYPEgHpe~~~~~~~~~~~~~~~dl~ 160 (565)
T PLN02540 83 KSNGIQ--NILALRGDPPHGQDKFVQVEGGFACALDLVKHIRSKYGDYFGITVAGYPEAHPDVIGGDGLATPEAYQKDLA 160 (565)
T ss_pred HHCCCC--EEEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHHhCCCCceEEEeCCCCCCCcccccccccCCCChHHHHH
Confidence 888876 45555432211 1123345555555554 5567888885532 2333
Q ss_pred HHhhc----CCceeeeccccccccchhhhHHHHHHHhC--CcEEe
Q 019200 171 RAHAV----HPITAVQMEWSLWTRDIEEEIIPLCRELG--IGIVP 209 (344)
Q Consensus 171 ~~~~~----~~~~~~q~~~n~~~~~~~~~l~~~~~~~g--i~v~a 209 (344)
.+.+. ..+-+-|+-|+. +.-...++.|++.| +.|++
T Consensus 161 ~Lk~KvdAGAdFiITQlfFD~---d~f~~f~~~~r~~Gi~vPIip 202 (565)
T PLN02540 161 YLKEKVDAGADLIITQLFYDT---DIFLKFVNDCRQIGITCPIVP 202 (565)
T ss_pred HHHHHHHcCCCEEeeccccCH---HHHHHHHHHHHhcCCCCCEEe
Confidence 33332 446667776665 22257888999998 44443
No 196
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=29.52 E-value=4.6e+02 Score=24.30 Aligned_cols=103 Identities=16% Similarity=0.112 Sum_probs=53.5
Q ss_pred CCHHHHHHHHHHHHHc-CCCEEecccCcCC--CchHHHHHHHHhc---C-CCCCeEEEecccccCCCCcccccCCChHHH
Q 019200 38 VSEEDGISMIKHAFSK-GITFFDTADVYGQ--NANEVLLGKALKQ---L-PREKIQVATKFGIAGIGVAGVIVKGAPDYV 110 (344)
Q Consensus 38 ~~~~~~~~~l~~Al~~-Gin~~DtA~~Yg~--g~sE~~lG~~l~~---~-~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i 110 (344)
.+.++..+++++.-+. ||+-+--+. |+ -.+...+.+.++. . ....+-|.|+.... .+..+
T Consensus 119 l~~~e~~~~i~~i~~~~~I~~VilSG--GDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~-----------~p~ri 185 (321)
T TIGR03822 119 LSPAELDAAFAYIADHPEIWEVILTG--GDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVA-----------DPARV 185 (321)
T ss_pred CCHHHHHHHHHHHHhCCCccEEEEeC--CCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCccc-----------Chhhc
Confidence 3557777888776654 787553110 11 0122233333322 1 12335667765321 12223
Q ss_pred HHHHHHHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCc
Q 019200 111 RSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK 155 (344)
Q Consensus 111 ~~~v~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ 155 (344)
...+-+.|++.|.. ..+.+|...+..-.++++++++.|++.|.
T Consensus 186 t~ell~~L~~~g~~--v~i~l~~~h~~el~~~~~~ai~~L~~~Gi 228 (321)
T TIGR03822 186 TPALIAALKTSGKT--VYVALHANHARELTAEARAACARLIDAGI 228 (321)
T ss_pred CHHHHHHHHHcCCc--EEEEecCCChhhcCHHHHHHHHHHHHcCC
Confidence 33444455666632 35677775544335778888888888885
No 197
>PRK06740 histidinol-phosphatase; Validated
Probab=29.46 E-value=4.7e+02 Score=24.41 Aligned_cols=23 Identities=22% Similarity=0.095 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHcCCCEEecccC
Q 019200 41 EDGISMIKHAFSKGITFFDTADV 63 (344)
Q Consensus 41 ~~~~~~l~~Al~~Gin~~DtA~~ 63 (344)
....+.+++|++.|+..|=-++|
T Consensus 61 ~~~e~yv~~Ai~~G~~~ig~SdH 83 (331)
T PRK06740 61 KWIDLYLEEALRKGIKEVGIVDH 83 (331)
T ss_pred chHHHHHHHHHHCCCcEEEECCC
Confidence 45799999999999998765555
No 198
>PHA02128 hypothetical protein
Probab=29.36 E-value=1.6e+02 Score=22.54 Aligned_cols=70 Identities=14% Similarity=0.236 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhc------------------CCceeeec---cccccccchhhhHHHH
Q 019200 141 EETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV------------------HPITAVQM---EWSLWTRDIEEEIIPL 199 (344)
Q Consensus 141 ~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~------------------~~~~~~q~---~~n~~~~~~~~~l~~~ 199 (344)
..++..-.++..+|-+|-|-+...+..+....... +.+.+.++ +|.+-.+....++.++
T Consensus 60 ~gl~~lane~~aqgg~r~itmn~ankrhv~dmv~~~wrgdi~ist~selt~~cp~vkflmideseytltsrh~rqeiydw 139 (151)
T PHA02128 60 TGLLHLANEVSAQGGARIITMNSANKRHVQDMVSYQWRGDIRISTISELTDRCPKVKFLMIDESEYTLTSRHQRQEIYDW 139 (151)
T ss_pred chHHHHHHHHHhcCCeEEEEeccchhhHHHHHhcccccCceEEeeHHHHhccCCeeEEEEEcchhceecchhhHHHHHhh
Confidence 45667778888889888888876555444443221 22333443 5777666666889999
Q ss_pred HHHhCCcEEec
Q 019200 200 CRELGIGIVPY 210 (344)
Q Consensus 200 ~~~~gi~v~a~ 210 (344)
+.-+|+.++.+
T Consensus 140 agthgvefvim 150 (151)
T PHA02128 140 AGTHGVEFVIM 150 (151)
T ss_pred cccCceEEEEe
Confidence 99999988754
No 199
>PF09989 DUF2229: CoA enzyme activase uncharacterised domain (DUF2229); InterPro: IPR018709 Proteins containing this domain include various bacterial hypothetical proteins, as well as CoA enzyme activases. The exact function of this domain has not, as yet, been defined.
Probab=29.25 E-value=1.3e+02 Score=26.46 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=24.1
Q ss_pred cccccccchhhhHHHHHHHhCCcEEec
Q 019200 184 EWSLWTRDIEEEIIPLCRELGIGIVPY 210 (344)
Q Consensus 184 ~~n~~~~~~~~~l~~~~~~~gi~v~a~ 210 (344)
+||++++....++.+..++.|+.|+..
T Consensus 192 pY~~~D~~in~~I~~~l~~~G~~vit~ 218 (221)
T PF09989_consen 192 PYNIYDPFINMGIPDKLRSLGVPVITE 218 (221)
T ss_pred CCcCCCcccCCchHHHHHHCCCeeeCc
Confidence 899999988889999999999999864
No 200
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=29.13 E-value=5.6e+02 Score=25.16 Aligned_cols=102 Identities=11% Similarity=0.112 Sum_probs=56.2
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEeccCCCCC----CHHHHHHHHHHHHHcC-cccE---------EecCCCCHHHH
Q 019200 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSV----PIEETIGEMKKLVEEG-KIKY---------IGLSEASPGTI 169 (344)
Q Consensus 104 ~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~----~~~~~~~~L~~l~~~G-~ir~---------iGvs~~~~~~l 169 (344)
.++.+....-++ .|.++|++.|.+. +....+. .-++-|+.++.+++.. .++. +|.++++-+.+
T Consensus 22 ~~~t~dkl~ia~-~Ld~~Gv~~IE~~--ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv 98 (448)
T PRK12331 22 RMTTEEMLPILE-KLDNAGYHSLEMW--GGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVV 98 (448)
T ss_pred ccCHHHHHHHHH-HHHHcCCCEEEec--CCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhH
Confidence 355666555554 5889999999983 1110000 1123577777777652 2332 45656544444
Q ss_pred H----HHhhcCCceeeeccccccccchhhhHHHHHHHhCCcEEe
Q 019200 170 R----RAHAVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVP 209 (344)
Q Consensus 170 ~----~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a 209 (344)
+ ++.+ ..++++.+...+-+..--...+++++++|+.+.+
T Consensus 99 ~~~v~~A~~-~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~ 141 (448)
T PRK12331 99 ESFVQKSVE-NGIDIIRIFDALNDVRNLETAVKATKKAGGHAQV 141 (448)
T ss_pred HHHHHHHHH-CCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEE
Confidence 3 3333 3456666554443322225688999999976653
No 201
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=29.02 E-value=4.7e+02 Score=24.65 Aligned_cols=90 Identities=14% Similarity=0.177 Sum_probs=57.1
Q ss_pred EEEeccCCCC-----------CCHHHHHHHHHHHHHc-Cc---ccEEecC--CCCHHHHHHH---hhcCCceeeeccccc
Q 019200 128 LYYQHRVDTS-----------VPIEETIGEMKKLVEE-GK---IKYIGLS--EASPGTIRRA---HAVHPITAVQMEWSL 187 (344)
Q Consensus 128 l~~lH~~~~~-----------~~~~~~~~~L~~l~~~-G~---ir~iGvs--~~~~~~l~~~---~~~~~~~~~q~~~n~ 187 (344)
.+.||.|+.. .+++++++++.++.++ |+ ++++=+. |.+.+.++++ +...+..++.++||.
T Consensus 215 aiSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~ieyvLI~GvNDs~eda~~L~~ll~~l~~kVnLIPyN~ 294 (342)
T PRK14465 215 AISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRRITFEYVMIPGVNMGRENANKLVKIARSLDCKINVIPLNT 294 (342)
T ss_pred EEEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCEEEEEEEEECCccCCHHHHHHHHHHHhhCCCcEEEEccCC
Confidence 4789999653 2468889999877744 32 3355453 3455555444 444557788999997
Q ss_pred cccc---hh----hhHHHHHHHhCCcEEecccCCccc
Q 019200 188 WTRD---IE----EEIIPLCRELGIGIVPYSPLGRGF 217 (344)
Q Consensus 188 ~~~~---~~----~~l~~~~~~~gi~v~a~~pl~~G~ 217 (344)
-... +. ....+..+++||.+......+..+
T Consensus 295 ~~~~~~~ps~e~i~~F~~~L~~~Gi~v~~R~~~G~di 331 (342)
T PRK14465 295 EFFGWRRPTDDEVAEFIMLLEPAGVPILNRRSPGKDI 331 (342)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCcCh
Confidence 4321 11 345666678899999887776544
No 202
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=28.95 E-value=4.7e+02 Score=24.21 Aligned_cols=94 Identities=17% Similarity=0.280 Sum_probs=65.5
Q ss_pred HHHhhcCCCceeEEEeccCCC-----CCCHHHHHHHHHHHHHcCccc-EEecCCC---CHHHHHHHhhcCC-ceeeeccc
Q 019200 116 ASLKRLDVDYIDLYYQHRVDT-----SVPIEETIGEMKKLVEEGKIK-YIGLSEA---SPGTIRRAHAVHP-ITAVQMEW 185 (344)
Q Consensus 116 ~SL~rLg~d~iDl~~lH~~~~-----~~~~~~~~~~L~~l~~~G~ir-~iGvs~~---~~~~l~~~~~~~~-~~~~q~~~ 185 (344)
+-.+++| .|++.+|-... +.+..|..+.|+++.+.=+|- -||=|+. ++..++++.+... -.+.....
T Consensus 158 k~Vk~fg---admvTiHlIsTdPki~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEvaEGeRclLaSa 234 (403)
T COG2069 158 KCVKKFG---ADMVTIHLISTDPKIKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVAEGERCLLASA 234 (403)
T ss_pred HHHHHhC---CceEEEEeecCCccccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhhcCceEEeecc
Confidence 4456777 56777775432 357789999999999887765 4677764 6778888877622 23344444
Q ss_pred cccccchhhhHHHHHHHhCCcEEecccCC
Q 019200 186 SLWTRDIEEEIIPLCRELGIGIVPYSPLG 214 (344)
Q Consensus 186 n~~~~~~~~~l~~~~~~~gi~v~a~~pl~ 214 (344)
|+ +.+. +.+.+++.++|=.|++|+++.
T Consensus 235 nl-dlDy-~~ia~AA~ky~H~VLswt~~D 261 (403)
T COG2069 235 NL-DLDY-ERIAEAALKYDHVVLSWTQMD 261 (403)
T ss_pred cc-ccCH-HHHHHHHHhcCceEEEeeccC
Confidence 44 3333 579999999999999999886
No 203
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=28.66 E-value=4.3e+02 Score=23.67 Aligned_cols=106 Identities=16% Similarity=0.047 Sum_probs=71.1
Q ss_pred cCCChHHHHHHHHHHHhhcCCCceeEEEeccCCCC-CCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhcCCceee
Q 019200 103 VKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS-VPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAV 181 (344)
Q Consensus 103 ~~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~-~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~ 181 (344)
...+.+.-.+-.+-..+-++++.|=|=.+.++... .+..+++++-++|+++|.+-. =+++.++...+++.+..+ +++
T Consensus 71 G~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vl-pyc~dd~~~ar~l~~~G~-~~v 148 (248)
T cd04728 71 GCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVL-PYCTDDPVLAKRLEDAGC-AAV 148 (248)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHcCC-CEe
Confidence 35777888888888889899999988888877643 467899999999999998543 256667777777766533 445
Q ss_pred eccccccccc--h-hhhHHHHHHH-hCCcEEec
Q 019200 182 QMEWSLWTRD--I-EEEIIPLCRE-LGIGIVPY 210 (344)
Q Consensus 182 q~~~n~~~~~--~-~~~l~~~~~~-~gi~v~a~ 210 (344)
+.--.+.-.+ . ..++++...+ .++.|++-
T Consensus 149 mPlg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~e 181 (248)
T cd04728 149 MPLGSPIGSGQGLLNPYNLRIIIERADVPVIVD 181 (248)
T ss_pred CCCCcCCCCCCCCCCHHHHHHHHHhCCCcEEEe
Confidence 3322222211 1 1345555555 47888774
No 204
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=28.50 E-value=3.3e+02 Score=25.01 Aligned_cols=120 Identities=15% Similarity=0.240 Sum_probs=73.3
Q ss_pred HHHHHHHHHH--HcCcccEEecCCCCHHHHHHHhhc--CCceeeec-ccc-ccc--cchhhhHHHHHHHhCCcEEecccC
Q 019200 142 ETIGEMKKLV--EEGKIKYIGLSEASPGTIRRAHAV--HPITAVQM-EWS-LWT--RDIEEEIIPLCRELGIGIVPYSPL 213 (344)
Q Consensus 142 ~~~~~L~~l~--~~G~ir~iGvs~~~~~~l~~~~~~--~~~~~~q~-~~n-~~~--~~~~~~l~~~~~~~gi~v~a~~pl 213 (344)
+..+.++.|. ..-++-++-=++.+.+...+..+. ..+-.+|. .+| +++ ++-...+.+++.+-.+-++.-++-
T Consensus 144 e~~~d~~~l~~~~~~~l~~~tQTTls~ddt~~Iv~~l~~r~p~~~~~~~~~ICyAT~nRQ~Avk~la~~~Dl~iVVG~~n 223 (294)
T COG0761 144 ESVEDVANLKVQLPDKLAFVTQTTLSVDDTAEIVAALKERFPKIEVPPFNDICYATQNRQDAVKELAPEVDLVIVVGSKN 223 (294)
T ss_pred ecHHHHHhcccCCcccEEEEeeeecCHHHHHHHHHHHHHhCccccCCcccccchhhhhHHHHHHHHhhcCCEEEEECCCC
Confidence 4455555554 233555555556666665554443 11111222 233 222 222245788888877777775555
Q ss_pred CcccCCCCCCCCCCCCCcccccccCccccchhhhHHHHHHHHHHHHHcCC------CHHHHHHHHHHhCCCCeEeecCCC
Q 019200 214 GRGFFGGKAVVENVPADSFLHFLPRFKGENLDRNKSIYFRIGNLAKKYNC------TSAQLALAWVLGQGDDVVPIPGTT 287 (344)
Q Consensus 214 ~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~------s~~qlal~~~l~~~~v~~vi~G~~ 287 (344)
++.- .+|.++|++.|. ++.++-..|.-... ...+-.|+|
T Consensus 224 SSNs----------------------------------~rL~eiA~~~g~~aylId~~~ei~~~w~~~~~-~VGvTAGAS 268 (294)
T COG0761 224 SSNS----------------------------------NRLAEIAKRHGKPAYLIDDAEEIDPEWLKGVK-TVGVTAGAS 268 (294)
T ss_pred CccH----------------------------------HHHHHHHHHhCCCeEEeCChHhCCHHHhcCcc-EEEEecCCC
Confidence 4311 578899999886 68888889988754 356788999
Q ss_pred CHHHHHHHH
Q 019200 288 KMKNLDDNI 296 (344)
Q Consensus 288 ~~~~l~~nl 296 (344)
+|+-|-+++
T Consensus 269 tPd~lV~~V 277 (294)
T COG0761 269 TPDWLVQEV 277 (294)
T ss_pred CCHHHHHHH
Confidence 999887765
No 205
>PRK03459 rnpA ribonuclease P; Reviewed
Probab=28.33 E-value=2.9e+02 Score=21.64 Aligned_cols=63 Identities=10% Similarity=0.000 Sum_probs=42.9
Q ss_pred CCCCeEEEecccccCCCCcccccCCChHHHHHHHHHHHhhcCCC---ceeEEEeccCCC-CCCHHHHHHHHHHHHHc
Q 019200 81 PREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVD---YIDLYYQHRVDT-SVPIEETIGEMKKLVEE 153 (344)
Q Consensus 81 ~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~SL~rLg~d---~iDl~~lH~~~~-~~~~~~~~~~L~~l~~~ 153 (344)
+|=-+.|+-|+|. -..++.+++.+.++...+..+ -.|++++-.+.. ..+..++.+.|+.+.++
T Consensus 48 ~R~G~~VsKKvG~----------AV~RNRiKR~lRe~~R~~~~~l~~g~D~Viiar~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03459 48 PRFGLVVSKAVGN----------AVIRHRVSRRLRHICADIVDQVPETHHVVIRALPGAATASSAELERDVRAGLGK 114 (122)
T ss_pred CEEEEEEeeeccc----------hhHHHHHHHHHHHHHHHhhhccCCCcEEEEEECcccccCCHHHHHHHHHHHHHH
Confidence 4555677777653 245777887777777776542 369999988764 45677777777776654
No 206
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=28.28 E-value=98 Score=18.40 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHcCCCHHHHH
Q 019200 248 KSIYFRIGNLAKKYNCTSAQLA 269 (344)
Q Consensus 248 ~~~~~~l~~la~~~~~s~~qla 269 (344)
....+.+.++|++.|.|.+++.
T Consensus 8 ~~~~~~l~~~a~~~g~s~s~~i 29 (39)
T PF01402_consen 8 DELYERLDELAKELGRSRSELI 29 (39)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHH
T ss_pred HHHHHHHHHHHHHHCcCHHHHH
Confidence 3556889999999999988854
No 207
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=28.14 E-value=2.8e+02 Score=24.38 Aligned_cols=71 Identities=14% Similarity=0.160 Sum_probs=50.1
Q ss_pred cCCChHHHHHHHHHHHhhcCC-Cce-------------------------eEEEeccCCCCCCH---HHHHHHHHHHHHc
Q 019200 103 VKGAPDYVRSCCEASLKRLDV-DYI-------------------------DLYYQHRVDTSVPI---EETIGEMKKLVEE 153 (344)
Q Consensus 103 ~~~~~~~i~~~v~~SL~rLg~-d~i-------------------------Dl~~lH~~~~~~~~---~~~~~~L~~l~~~ 153 (344)
.+.+...+++.+++.-++|+. +|+ +++.+.-|..-.++ ...-+.+.+++.+
T Consensus 103 ~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~e 182 (245)
T COG4555 103 NGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNE 182 (245)
T ss_pred hhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcC
Confidence 456777788888888888875 233 33444444332232 4667888999999
Q ss_pred CcccEEecCCCCHHHHHHHhhc
Q 019200 154 GKIKYIGLSEASPGTIRRAHAV 175 (344)
Q Consensus 154 G~ir~iGvs~~~~~~l~~~~~~ 175 (344)
|+ .+=+|+|..+.++++++.
T Consensus 183 gr--~viFSSH~m~EvealCDr 202 (245)
T COG4555 183 GR--AVIFSSHIMQEVEALCDR 202 (245)
T ss_pred Cc--EEEEecccHHHHHHhhhe
Confidence 98 788999999999988875
No 208
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=28.12 E-value=4.4e+02 Score=23.58 Aligned_cols=123 Identities=13% Similarity=0.127 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHcCCCEEecccCcCCCchHHHHHH----HHhc--CCCCCeEEEecccccCCCCcccccCCChHHHHHHH
Q 019200 41 EDGISMIKHAFSKGITFFDTADVYGQNANEVLLGK----ALKQ--LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCC 114 (344)
Q Consensus 41 ~~~~~~l~~Al~~Gin~~DtA~~Yg~g~sE~~lG~----~l~~--~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v 114 (344)
+++.+.+..+++.|-++| .+|.|.|-.+--. ...+ .+++.+....-.|...... ..... +.-...-
T Consensus 36 ~~av~~~~~~l~~ggrl~----~~GaGtSg~la~~da~e~~~tfg~~~~~v~~~iagg~~a~~~---a~~~~-edd~~~~ 107 (257)
T cd05007 36 ARAVDAAAERLRAGGRLI----YVGAGTSGRLGVLDASELPPTFGTPPERVVGLIAGGEPALTR---AVEGA-EDDEEAG 107 (257)
T ss_pred HHHHHHHHHHHHcCCEEE----EEcCcHHHHHHHHHHHhccccccCCcccceEEEeCCHHHHHh---hcccc-CChHHHH
Confidence 345556667778888877 4677755543321 1111 1344443222222110000 00001 1111112
Q ss_pred HHHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhh
Q 019200 115 EASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHA 174 (344)
Q Consensus 115 ~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~ 174 (344)
.+.+...+...=|++..-...... .+++++++..++.| +.-|++++.....+.+..+
T Consensus 108 ~~~l~a~~l~~~DvvI~IS~SG~T--~~vi~al~~Ak~~G-a~~I~It~~~~s~L~~~aD 164 (257)
T cd05007 108 AADLQAINLTERDVVIGIAASGRT--PYVLGALRYARARG-ALTIGIACNPGSPLLQLAD 164 (257)
T ss_pred HHHHHHcCCCCCCEEEEEeCCCCC--HHHHHHHHHHHHCC-CeEEEEECCCCChhHHhCC
Confidence 334444555667998887766554 67899999999998 7899999887777766544
No 209
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=28.03 E-value=87 Score=24.24 Aligned_cols=28 Identities=11% Similarity=0.201 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEecccCcCC
Q 019200 39 SEEDGISMIKHAFSKGITFFDTADVYGQ 66 (344)
Q Consensus 39 ~~~~~~~~l~~Al~~Gin~~DtA~~Yg~ 66 (344)
+.+.+.+....+++.|++.||.+..|..
T Consensus 75 ~~~~~~~~~~~~~~~g~~ViD~s~~~R~ 102 (121)
T PF01118_consen 75 PHGASKELAPKLLKAGIKVIDLSGDFRL 102 (121)
T ss_dssp CHHHHHHHHHHHHHTTSEEEESSSTTTT
T ss_pred chhHHHHHHHHHhhCCcEEEeCCHHHhC
Confidence 6677899999999999999999998864
No 210
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=27.99 E-value=5e+02 Score=25.43 Aligned_cols=155 Identities=15% Similarity=0.123 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHc--CCCEEe-cccCcCCCchHHHHHHHHhcCCCCCeEEEecccccCCCCcccccCCChHHHHHHHH
Q 019200 39 SEEDGISMIKHAFSK--GITFFD-TADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCE 115 (344)
Q Consensus 39 ~~~~~~~~l~~Al~~--Gin~~D-tA~~Yg~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~ 115 (344)
+.+...+-++...+. |++.|- ..+.+.. ..+.+-+.++...+..+....-. ..+.+++.++.--+
T Consensus 228 s~e~V~~Ei~~~~~~~~~~~~i~f~Dd~f~~--~~~~~~~l~~~l~~~~i~~~~~~----------~~~~~~e~l~~l~~ 295 (472)
T TIGR03471 228 SAESVIEEVKYALENFPEVREFFFDDDTFTD--DKPRAEEIARKLGPLGVTWSCNA----------RANVDYETLKVMKE 295 (472)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEeCCCCCC--CHHHHHHHHHHHhhcCceEEEEe----------cCCCCHHHHHHHHH
Q ss_pred HHHhhc--CCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCcccE----EecCCCCHHHHHHHhhc-CCceeeecccccc
Q 019200 116 ASLKRL--DVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKY----IGLSEASPGTIRRAHAV-HPITAVQMEWSLW 188 (344)
Q Consensus 116 ~SL~rL--g~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~----iGvs~~~~~~l~~~~~~-~~~~~~q~~~n~~ 188 (344)
.-+.++ |++..|==.+....-....++..++++.+++.|.--. +|+-+.+.+.+++.++. .......+.++++
T Consensus 296 aG~~~v~iGiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~~l~~~~~~~~~l 375 (472)
T TIGR03471 296 NGLRLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKELNPHTIQVSLA 375 (472)
T ss_pred cCCCEEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCceeeeec
Q ss_pred ccchhhhHHHHHHHhCC
Q 019200 189 TRDIEEEIIPLCRELGI 205 (344)
Q Consensus 189 ~~~~~~~l~~~~~~~gi 205 (344)
.+-+...+.+.++++|+
T Consensus 376 ~P~PGT~l~~~~~~~g~ 392 (472)
T TIGR03471 376 APYPGTELYDQAKQNGW 392 (472)
T ss_pred ccCCCcHHHHHHHHCCC
No 211
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=27.95 E-value=2.9e+02 Score=26.10 Aligned_cols=102 Identities=12% Similarity=0.053 Sum_probs=61.2
Q ss_pred CCCeEEEecccccCCCC------cccccCCChHHHHHHHHHHHhhcCCCceeEEEecc-CCCCCCHHHHHHHHHHHHHcC
Q 019200 82 REKIQVATKFGIAGIGV------AGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHR-VDTSVPIEETIGEMKKLVEEG 154 (344)
Q Consensus 82 R~~~~I~tK~~~~~~~~------~~~~~~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~-~~~~~~~~~~~~~L~~l~~~G 154 (344)
|..+.|+|-+|....-. .+...+++.+.|..++...-+. +.++-+.+-. =+|....+++++++..+.+..
T Consensus 102 r~t~cvSsQvGC~~~C~FC~Tg~~g~~rnLt~~EIl~Qv~~~~~~---~~i~nIvfmGmGEPL~N~d~vi~al~~l~~~~ 178 (345)
T PRK14466 102 RATLCVSSQVGCKMNCLFCMTGKQGFTGNLTAAQILNQIYSLPER---DKLTNLVFMGMGEPLDNLDEVLKALEILTAPY 178 (345)
T ss_pred ceEEEEEcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhhhhc---CCCCeEEEeeeCcCcccHHHHHHHHHHHhhcc
Confidence 56677888777544311 1223568999999998866322 2244343333 345556788999999998764
Q ss_pred cc----cEEecCCCCHH-HHHHHhhcCCceeeeccccc
Q 019200 155 KI----KYIGLSEASPG-TIRRAHAVHPITAVQMEWSL 187 (344)
Q Consensus 155 ~i----r~iGvs~~~~~-~l~~~~~~~~~~~~q~~~n~ 187 (344)
-. |.|-||+.... .+.++.+..+ ..+.+..+.
T Consensus 179 g~~~s~r~ItVsT~G~~~~i~~l~~~~~-~~LavSLha 215 (345)
T PRK14466 179 GYGWSPKRITVSTVGLKKGLKRFLEESE-CHLAISLHS 215 (345)
T ss_pred ccCcCCceEEEEcCCCchHHHHHhhccC-cEEEEEcCC
Confidence 44 67888876643 3666555333 233454443
No 212
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=27.89 E-value=2.7e+02 Score=26.78 Aligned_cols=75 Identities=13% Similarity=0.116 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhc-CCceeeeccccccccchh-hhHHHHHHHhCCcEEecccCCcc
Q 019200 142 ETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV-HPITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRG 216 (344)
Q Consensus 142 ~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~-~~l~~~~~~~gi~v~a~~pl~~G 216 (344)
.++..++.+.+.+.++.+-+...+.+.+++++.. .++.++..+-|+.-+-.+ .++.+.|+++|+.++.=.+.+.+
T Consensus 111 ~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~ 187 (405)
T PRK08776 111 GSWRLFNALAKKGHFALITADLTDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSP 187 (405)
T ss_pred HHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCccc
Confidence 4444455554445555555554566777666542 233444556666443222 57888999999888866665544
No 213
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=27.70 E-value=3e+02 Score=24.52 Aligned_cols=73 Identities=19% Similarity=0.120 Sum_probs=48.5
Q ss_pred HHHHHHHHHHcCcccEEecCCCCHHHHHHHhhcCCceeeecccccccc-chhhhHHHHHHHhCCcEEecccCCcc
Q 019200 143 TIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWTR-DIEEEIIPLCRELGIGIVPYSPLGRG 216 (344)
Q Consensus 143 ~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~~~gi~v~a~~pl~~G 216 (344)
-++.+.++. .+.=-..|=|-++.+.+.++++...++++|+.....-- ..-..+...|+.+|+.++..+-+..+
T Consensus 166 d~~~~~~l~-~~~PIa~dEs~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~gi~~~~~~~~es~ 239 (263)
T cd03320 166 DLAELRRLA-AGVPIALDESLRRLDDPLALAAAGALGALVLKPALLGGPRALLELAEEARARGIPAVVSSALESS 239 (263)
T ss_pred HHHHHHHhh-cCCCeeeCCccccccCHHHHHhcCCCCEEEECchhcCCHHHHHHHHHHHHHcCCCEEEEcchhhH
Confidence 355555555 33333555555677778888887788888887665421 11267999999999999887555433
No 214
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=27.67 E-value=2.7e+02 Score=25.51 Aligned_cols=94 Identities=18% Similarity=0.234 Sum_probs=59.7
Q ss_pred HhhcCCCceeEEEeccCCCCCCHHHH-----HHHHHHHHHcCcccEEecCCCCHH-------HHHHHhhcCCceeeeccc
Q 019200 118 LKRLDVDYIDLYYQHRVDTSVPIEET-----IGEMKKLVEEGKIKYIGLSEASPG-------TIRRAHAVHPITAVQMEW 185 (344)
Q Consensus 118 L~rLg~d~iDl~~lH~~~~~~~~~~~-----~~~L~~l~~~G~ir~iGvs~~~~~-------~l~~~~~~~~~~~~q~~~ 185 (344)
++.++-.++|+..+..+.......+. -+.+.++.++--=|++|+.+.++. .+++......++-+|+
T Consensus 55 ~~~~~~~~i~~~~~~~~~~~~~~~d~~~~~~nd~~a~~~~~~pdrf~~~~~v~p~~~~~a~~E~er~v~~~gf~g~~l-- 132 (293)
T COG2159 55 LAFMDAAGIDLFVLSGMGEVAIIPDLRRALANDDLAALAAEYPDRFVGFARVDPRDPEAAAEELERRVRELGFVGVKL-- 132 (293)
T ss_pred HhhhcccccceEEeeccccccchHHHhhhhhhHHHHHHHhhCCcceeeeeeeCCCchHHHHHHHHHHHHhcCceEEEe--
Confidence 77788888999888841111112222 257888888888899999987665 3444444444444444
Q ss_pred cccccc-----h-hhhHHHHHHHhCCcEEecccC
Q 019200 186 SLWTRD-----I-EEEIIPLCRELGIGIVPYSPL 213 (344)
Q Consensus 186 n~~~~~-----~-~~~l~~~~~~~gi~v~a~~pl 213 (344)
+...+. . ...++++|+++|+.|+-+...
T Consensus 133 ~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~ 166 (293)
T COG2159 133 HPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGA 166 (293)
T ss_pred cccccCCCCCChHHHHHHHHHHHcCCCEEEEeCC
Confidence 222221 1 156999999999999985544
No 215
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=27.40 E-value=5.6e+02 Score=24.56 Aligned_cols=102 Identities=13% Similarity=0.062 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHcCCCEEecccCcCC--CchHHHHHHHHhcCCCCCeEEEecccccCCCCcccccCCChHHHHHHHHHHHh
Q 019200 42 DGISMIKHAFSKGITFFDTADVYGQ--NANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLK 119 (344)
Q Consensus 42 ~~~~~l~~Al~~Gin~~DtA~~Yg~--g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~SL~ 119 (344)
+..++++.|++.|+.-|=+...|.. ..++..+-+.++...+-...|.+..-... ....+.+.+.++.+.
T Consensus 168 ~~~~l~~~al~~Ga~g~~~~~~y~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~--------~~e~~av~~~~~~a~- 238 (415)
T cd01297 168 KMRELLREALEAGALGISTGLAYAPRLYAGTAELVALARVAARYGGVYQTHVRYEG--------DSILEALDELLRLGR- 238 (415)
T ss_pred HHHHHHHHHHHCCCeEEEcccccCCcccCCHHHHHHHHHHHHHcCCEEEEEECccc--------ccHHHHHHHHHHHHH-
Confidence 4566788889999877765555533 34566666665443333555555542110 112333444444332
Q ss_pred hcCCCceeEEEeccCCCC----CCHHHHHHHHHHHHHcCc
Q 019200 120 RLDVDYIDLYYQHRVDTS----VPIEETIGEMKKLVEEGK 155 (344)
Q Consensus 120 rLg~d~iDl~~lH~~~~~----~~~~~~~~~L~~l~~~G~ 155 (344)
+.|. -+...|-.... ..+.++++.+++.+++|.
T Consensus 239 ~~g~---r~~i~H~ss~~~~~~~~~~~~l~~i~~a~~~G~ 275 (415)
T cd01297 239 ETGR---PVHISHLKSAGAPNWGKIDRLLALIEAARAEGL 275 (415)
T ss_pred HhCC---CEEEEEEecCCCcccchHHHHHHHHHHHHHhCC
Confidence 3342 34555544322 245566777777777765
No 216
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=27.35 E-value=81 Score=20.11 Aligned_cols=42 Identities=12% Similarity=0.180 Sum_probs=30.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhCCCCeEeecCCCCHHHHHHHHhhcCC
Q 019200 254 IGNLAKKYNCTSAQLALAWVLGQGDDVVPIPGTTKMKNLDDNIDSLRI 301 (344)
Q Consensus 254 l~~la~~~~~s~~qlal~~~l~~~~v~~vi~G~~~~~~l~~nl~a~~~ 301 (344)
+++||+..|+|++.+. .+|+.+. -+...+.+++.+.++.+++
T Consensus 2 i~dIA~~agvS~~TVS--r~ln~~~----~vs~~tr~rI~~~a~~lgY 43 (46)
T PF00356_consen 2 IKDIAREAGVSKSTVS--RVLNGPP----RVSEETRERILEAAEELGY 43 (46)
T ss_dssp HHHHHHHHTSSHHHHH--HHHTTCS----SSTHHHHHHHHHHHHHHTB
T ss_pred HHHHHHHHCcCHHHHH--HHHhCCC----CCCHHHHHHHHHHHHHHCC
Confidence 6789999999998754 4555542 4566677788877776665
No 217
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=27.27 E-value=2.4e+02 Score=24.38 Aligned_cols=88 Identities=16% Similarity=0.208 Sum_probs=54.2
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecCC-CCHHHHHHHhhcCCceeeecc
Q 019200 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE-ASPGTIRRAHAVHPITAVQME 184 (344)
Q Consensus 106 ~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~~ 184 (344)
+++...+-+ +.|-.-|+..+-+=+ -. ...++.+++++++..=-.||..+ .+.++++.+++..- +++..
T Consensus 18 ~~e~a~~~~-~al~~~Gi~~iEit~---~t-----~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA-~Fivs- 86 (204)
T TIGR01182 18 DVDDALPLA-KALIEGGLRVLEVTL---RT-----PVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGA-QFIVS- 86 (204)
T ss_pred CHHHHHHHH-HHHHHcCCCEEEEeC---CC-----ccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCC-CEEEC-
Confidence 445554444 356667765554433 11 23455666666654335688876 48888988888643 33322
Q ss_pred ccccccchhhhHHHHHHHhCCcEEe
Q 019200 185 WSLWTRDIEEEIIPLCRELGIGIVP 209 (344)
Q Consensus 185 ~n~~~~~~~~~l~~~~~~~gi~v~a 209 (344)
+ ....+++++|+++||.++.
T Consensus 87 --P---~~~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 87 --P---GLTPELAKHAQDHGIPIIP 106 (204)
T ss_pred --C---CCCHHHHHHHHHcCCcEEC
Confidence 2 2235899999999999887
No 218
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=27.24 E-value=4.9e+02 Score=23.88 Aligned_cols=57 Identities=18% Similarity=0.158 Sum_probs=41.2
Q ss_pred HHHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhh
Q 019200 115 EASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHA 174 (344)
Q Consensus 115 ~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~ 174 (344)
.+.+...+...=|++..-...... .+++++++..++.| ++.|++++.....+.+..+
T Consensus 117 ~~~l~a~~l~~~DvvI~IS~SG~T--~~vi~al~~Ak~~G-a~~IaIT~~~~s~La~~aD 173 (296)
T PRK12570 117 AQDLKAIGLTADDVVVGIAASGRT--PYVIGALEYAKQIG-ATTIALSCNPDSPIAKIAD 173 (296)
T ss_pred HHHHHHcCCCCCCEEEEEeCCCCC--HHHHHHHHHHHHCC-CeEEEEECCCCChhHHhCC
Confidence 334445555556999887765544 56899999999998 7889999887766665543
No 219
>PRK12928 lipoyl synthase; Provisional
Probab=27.19 E-value=4.9e+02 Score=23.82 Aligned_cols=103 Identities=15% Similarity=0.137 Sum_probs=56.8
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEeccCC-CCCCHHHHHHHHHHHHHcC-cccEEecC--CC---CHHHHHHHhhcC
Q 019200 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVD-TSVPIEETIGEMKKLVEEG-KIKYIGLS--EA---SPGTIRRAHAVH 176 (344)
Q Consensus 104 ~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~-~~~~~~~~~~~L~~l~~~G-~ir~iGvs--~~---~~~~l~~~~~~~ 176 (344)
..+++.+.+.++ .+.++|+.+|-+.-.+..| ++...+...+.++.+++.. .+ .|.+- .+ ..+.+.++.+..
T Consensus 86 ~~~~eei~~~a~-~~~~~G~keivitg~~~dDl~d~g~~~~~ell~~Ik~~~p~~-~I~~ltp~~~~~~~e~L~~l~~Ag 163 (290)
T PRK12928 86 PLDPDEPERVAE-AVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARNPGT-GIEVLTPDFWGGQRERLATVLAAK 163 (290)
T ss_pred CCCHHHHHHHHH-HHHHCCCCEEEEEEEeCCcccccCHHHHHHHHHHHHhcCCCC-EEEEeccccccCCHHHHHHHHHcC
Confidence 478899998888 5888899998888776544 2333445556666666653 22 23322 22 234566665543
Q ss_pred Cceeeec-------cccccccc----hhhhHHHHHHHhC--CcEEe
Q 019200 177 PITAVQM-------EWSLWTRD----IEEEIIPLCRELG--IGIVP 209 (344)
Q Consensus 177 ~~~~~q~-------~~n~~~~~----~~~~l~~~~~~~g--i~v~a 209 (344)
+ +++.. -+..+.+. ...++++.+++.| +.+-+
T Consensus 164 ~-~i~~hnlEt~~~vl~~m~r~~t~e~~le~l~~ak~~gp~i~~~s 208 (290)
T PRK12928 164 P-DVFNHNLETVPRLQKAVRRGADYQRSLDLLARAKELAPDIPTKS 208 (290)
T ss_pred c-hhhcccCcCcHHHHHHhCCCCCHHHHHHHHHHHHHhCCCceecc
Confidence 2 22111 01111111 1146888888888 55444
No 220
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=27.12 E-value=7.6e+02 Score=26.05 Aligned_cols=158 Identities=13% Similarity=0.101 Sum_probs=82.2
Q ss_pred CCCHHHHHHHHH-------HHHHcCCCEEec--c-----------------cCcCCCchH---HHHHHH---HhcCCCCC
Q 019200 37 PVSEEDGISMIK-------HAFSKGITFFDT--A-----------------DVYGQNANE---VLLGKA---LKQLPREK 84 (344)
Q Consensus 37 ~~~~~~~~~~l~-------~Al~~Gin~~Dt--A-----------------~~Yg~g~sE---~~lG~~---l~~~~R~~ 84 (344)
.++.++..++++ +|.+.|+..||- | +.||. .-| +++-+. +++.-.++
T Consensus 540 ~mt~~eI~~~i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGG-slenR~r~~~eiv~~ir~~~~~~ 618 (765)
T PRK08255 540 EMTRADMDRVRDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGG-SLENRLRYPLEVFRAVRAVWPAE 618 (765)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCC-CHHHHhHHHHHHHHHHHHhcCCC
Confidence 467777655554 456789999985 2 23442 122 222222 22222357
Q ss_pred eEEEecccccCCCCcccccCCChHHHHHHHHHHHhhcCCCceeEEEeccCCC----CCCHH--HHHHHHHHHHHcCcccE
Q 019200 85 IQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDT----SVPIE--ETIGEMKKLVEEGKIKY 158 (344)
Q Consensus 85 ~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~----~~~~~--~~~~~L~~l~~~G~ir~ 158 (344)
+-|..|+....... ...+.+...+ +-+-|+..|+|+||+ |.... ..... -......++|+.=+|--
T Consensus 619 ~~v~~ri~~~~~~~----~g~~~~~~~~-~~~~l~~~g~d~i~v---s~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv 690 (765)
T PRK08255 619 KPMSVRISAHDWVE----GGNTPDDAVE-IARAFKAAGADLIDV---SSGQVSKDEKPVYGRMYQTPFADRIRNEAGIAT 690 (765)
T ss_pred CeeEEEEccccccC----CCCCHHHHHH-HHHHHHhcCCcEEEe---CCCCCCcCCCCCcCccccHHHHHHHHHHcCCEE
Confidence 78888987532211 1244554443 334567778666664 42210 00000 01122345555445666
Q ss_pred EecCCC-CHHHHHHHhhcCCceeeec-cccccccchhhhHHHHHHHhCCc
Q 019200 159 IGLSEA-SPGTIRRAHAVHPITAVQM-EWSLWTRDIEEEIIPLCRELGIG 206 (344)
Q Consensus 159 iGvs~~-~~~~l~~~~~~~~~~~~q~-~~n~~~~~~~~~l~~~~~~~gi~ 206 (344)
+++.+. +++.++++++....|.+.+ +--+.++. =+...+.+.++.
T Consensus 691 ~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~dP~---~~~~~~~~~~~~ 737 (765)
T PRK08255 691 IAVGAISEADHVNSIIAAGRADLCALARPHLADPA---WTLHEAAEIGYR 737 (765)
T ss_pred EEeCCCCCHHHHHHHHHcCCcceeeEcHHHHhCcc---HHHHHHHHcCCC
Confidence 666665 7788888888877777665 22233332 255666676665
No 221
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=26.98 E-value=65 Score=27.58 Aligned_cols=82 Identities=22% Similarity=0.291 Sum_probs=47.6
Q ss_pred HHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecCC-CCHHHHHHHhhcCCceeeeccccccccchhhh
Q 019200 117 SLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE-ASPGTIRRAHAVHPITAVQMEWSLWTRDIEEE 195 (344)
Q Consensus 117 SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~ 195 (344)
.+..+|.||+=+.+.-....... .+...+|.+.-..+.+||.. .+.+.+.+..+...++++|+.-+- . .+
T Consensus 14 ~~~~~g~d~~Gfi~~~~S~R~v~----~~~a~~l~~~~~~~~VgVf~~~~~~~I~~~~~~~~ld~vQLHG~e-~----~e 84 (197)
T PF00697_consen 14 LAAELGADYLGFIFYPKSPRYVS----PDQARELVSAVPPKIVGVFVNQSPEEILEIVEELGLDVVQLHGDE-S----PE 84 (197)
T ss_dssp HHHHHTSSEEEEE--TTCTTB------HHHHHHHHCCSSSSEEEEESSS-HHHHHHHHHHCTESEEEE-SGG------HH
T ss_pred HHHHcCCCEEeeecCCCCCCccC----HHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHHcCCCEEEECCCC-C----HH
Confidence 56778999988864432222222 33445555444444888864 577888888888999999986655 1 23
Q ss_pred HHHHHHHhCCcEE
Q 019200 196 IIPLCRELGIGIV 208 (344)
Q Consensus 196 l~~~~~~~gi~v~ 208 (344)
+....+ .++.++
T Consensus 85 ~~~~l~-~~~~vi 96 (197)
T PF00697_consen 85 YIKLLR-AGLPVI 96 (197)
T ss_dssp HHHHHH-TTSEEE
T ss_pred HHHHhh-cCceEE
Confidence 444444 345554
No 222
>PRK00499 rnpA ribonuclease P; Reviewed
Probab=26.97 E-value=2.9e+02 Score=21.19 Aligned_cols=63 Identities=16% Similarity=0.148 Sum_probs=42.1
Q ss_pred CCCCeEEEecccccCCCCcccccCCChHHHHHHHHHHHhhcCC---CceeEEEeccCCC-CCCHHHHHHHHHHHHHc
Q 019200 81 PREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDV---DYIDLYYQHRVDT-SVPIEETIGEMKKLVEE 153 (344)
Q Consensus 81 ~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~SL~rLg~---d~iDl~~lH~~~~-~~~~~~~~~~L~~l~~~ 153 (344)
.|=-+.|+-|+|. ...++.|++.+.+.+..+.. ...|++++-.+.. ..+..++-+.|..|.++
T Consensus 38 ~R~GisVsKKvgk----------AV~RNriKR~lRE~~R~~~~~~~~~~d~v~i~r~~~~~~~~~~l~~~l~~ll~k 104 (114)
T PRK00499 38 FRVGISVSKKVGN----------AVVRNRIKRLIRESFRELKDEIKKGYDFVVIARKPAAELDYKEIKKSLIHVLKL 104 (114)
T ss_pred cEEEEEEecccCc----------hhhHhHHHHHHHHHHHHhhhcccCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 3444566666653 25677788888877776532 3579999988764 45677777777777654
No 223
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=26.65 E-value=5.3e+02 Score=24.05 Aligned_cols=107 Identities=11% Similarity=0.077 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHhhcCCCceeEEEeccCCCCC-CHHHHHHHHHHHHHcCcccEEecCC---------CCHHHHHHHhhcC
Q 019200 107 PDYVRSCCEASLKRLDVDYIDLYYQHRVDTSV-PIEETIGEMKKLVEEGKIKYIGLSE---------ASPGTIRRAHAVH 176 (344)
Q Consensus 107 ~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~-~~~~~~~~L~~l~~~G~ir~iGvs~---------~~~~~l~~~~~~~ 176 (344)
.+.+.+.++...+.-++ -++++-.. ++.. ....+.+.++.+.+-+.++.|.++. .+.+.++.+.+ .
T Consensus 144 ~~~~~~~i~~i~~~~~i--~eV~lsGG-DPLl~~d~~L~~ll~~L~~i~~~~~IRi~tr~~~~~P~rit~el~~~L~~-~ 219 (331)
T TIGR00238 144 KKKWQKALDYIAEHPEI--IEILISGG-DPLMAKDHELEWLLKRLEEIPHLVRLRIGTRLPVVIPQRITDELCELLAS-F 219 (331)
T ss_pred HHHHHHHHHHHHhCCCc--CEEEEECC-ccccCCHHHHHHHHHHHHhcCCccEEEeecCCCccCchhcCHHHHHHHHh-c
Confidence 34444444443333232 35555542 3322 2233556666776666555554432 23333333333 2
Q ss_pred Cceeee-ccccccc--cchhhhHHHHHHHhCCcEEecccCCccc
Q 019200 177 PITAVQ-MEWSLWT--RDIEEEIIPLCRELGIGIVPYSPLGRGF 217 (344)
Q Consensus 177 ~~~~~q-~~~n~~~--~~~~~~l~~~~~~~gi~v~a~~pl~~G~ 217 (344)
.+..++ ..+|--. .....+.++.+++.|+.+...++|..|.
T Consensus 220 ~~~~~~vsh~nh~~Ei~~~~~~ai~~L~~aGi~v~~qtvLl~gv 263 (331)
T TIGR00238 220 ELQLMLVTHINHCNEITEEFAEAMKKLRTVNVTLLNQSVLLRGV 263 (331)
T ss_pred CCcEEEEccCCChHhCCHHHHHHHHHHHHcCCEEEeecceECCc
Confidence 323333 3344321 0111456777889999999999999876
No 224
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=26.64 E-value=6.6e+02 Score=25.13 Aligned_cols=89 Identities=15% Similarity=0.248 Sum_probs=48.6
Q ss_pred eeEEEeccCCCCCC-HHHHHHHHHHHH------------------HcCcccEEecCC------CCHHHHHHHhhcCCcee
Q 019200 126 IDLYYQHRVDTSVP-IEETIGEMKKLV------------------EEGKIKYIGLSE------ASPGTIRRAHAVHPITA 180 (344)
Q Consensus 126 iDl~~lH~~~~~~~-~~~~~~~L~~l~------------------~~G~ir~iGvs~------~~~~~l~~~~~~~~~~~ 180 (344)
++++.+|.|..... ....-.+++.++ ..++|.-||.++ .+.+.++++++...+.+
T Consensus 117 ~pVi~v~t~~f~g~~~~g~~~~l~~lv~~~~~~~~~~~~~~~~~~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~v 196 (513)
T CHL00076 117 SDVILADVNHYRVNELQAADRTLEQIVRFYLEKARKQGTLDQSKTDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEI 196 (513)
T ss_pred CCEEEeCCCCCcccHHHHHHHHHHHHHHHHhhcccccccccccCCCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeE
Confidence 68999999965432 211112222222 235688898774 24566777777655554
Q ss_pred eec----------------cccccc-cchhhhHHHHHH-HhCCcEEecccCC
Q 019200 181 VQM----------------EWSLWT-RDIEEEIIPLCR-ELGIGIVPYSPLG 214 (344)
Q Consensus 181 ~q~----------------~~n~~~-~~~~~~l~~~~~-~~gi~v~a~~pl~ 214 (344)
+.+ .+|+.. +.....+.++.+ +.|+.++...|++
T Consensus 197 n~v~~~g~sl~di~~~~~A~~NIvl~~~~g~~~A~~Le~~fgiP~i~~~PiG 248 (513)
T CHL00076 197 NQIIPEGGSVEDLKNLPKAWFNIVPYREVGLMTAKYLEKEFGMPYISTTPMG 248 (513)
T ss_pred EEEECCCCCHHHHHhcccCcEEEEechhhhHHHHHHHHHHhCCCeEeeccCC
Confidence 422 133322 212233445444 5589888777774
No 225
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=26.48 E-value=5.1e+02 Score=23.76 Aligned_cols=48 Identities=6% Similarity=-0.096 Sum_probs=28.7
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcC
Q 019200 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG 154 (344)
Q Consensus 104 ~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G 154 (344)
..+.+.|.+.++...+ .|...+-+.--+.| ....+...+.++.+++.+
T Consensus 35 ~ls~eeI~~~~~~~~~-~G~~~i~l~gg~~~--~~~~~~~~~i~~~Ik~~~ 82 (309)
T TIGR00423 35 VLSLEEILEKVKEAVA-KGATEVCIQGGLNP--QLDIEYYEELFRAIKQEF 82 (309)
T ss_pred cCCHHHHHHHHHHHHH-CCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHC
Confidence 4677788877776543 57776666532223 233455566677777665
No 226
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=26.44 E-value=5.6e+02 Score=24.29 Aligned_cols=138 Identities=14% Similarity=0.128 Sum_probs=0.0
Q ss_pred CCCc---hHHHHHHHHhcCCCC--------CeEEEecccccCCCCcccccCCChHHHHHHHHHHHhhcCCCceeEEEecc
Q 019200 65 GQNA---NEVLLGKALKQLPRE--------KIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHR 133 (344)
Q Consensus 65 g~g~---sE~~lG~~l~~~~R~--------~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~ 133 (344)
|.|+ +-..+-++++....+ .+.|+|-. +-..+++ |...+....=.+-||.
T Consensus 168 GmGEPL~N~d~v~~~l~~l~~~~Gl~~~~r~itVsTsG------------------~~~~i~~-L~~~dl~v~LaiSLha 228 (356)
T PRK14462 168 GMGEPLDNLDNVSKAIKIFSENDGLAISPRRQTISTSG------------------LASKIKK-LGEMNLGVQLAISLHA 228 (356)
T ss_pred CCcccccCHHHHHHHHHHhcCccCCCcCCCceEEECCC------------------ChHHHHH-HHhcCCCeEEEEECCC
Q ss_pred CCC-----------CCCHHHHHHHHHHHH-HcCc---ccEEecCCC--CHHHHHHHhhc---CCceeeeccccccccchh
Q 019200 134 VDT-----------SVPIEETIGEMKKLV-EEGK---IKYIGLSEA--SPGTIRRAHAV---HPITAVQMEWSLWTRDIE 193 (344)
Q Consensus 134 ~~~-----------~~~~~~~~~~L~~l~-~~G~---ir~iGvs~~--~~~~l~~~~~~---~~~~~~q~~~n~~~~~~~ 193 (344)
+++ .-+++++++++.++. +.|+ |+|+=+.++ +.+.++++.+. .+..++-++||.+....-
T Consensus 229 ~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPyn~~~~~~~ 308 (356)
T PRK14462 229 VDDELRSELMPINKAYNIESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNGIKAKVNLILFNPHEGSKF 308 (356)
T ss_pred CCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhhcCcEEEEEeCCCCCCCCC
Q ss_pred --------hhHHHHHHHhCCcEEecccCCcccCCCC
Q 019200 194 --------EEIIPLCRELGIGIVPYSPLGRGFFGGK 221 (344)
Q Consensus 194 --------~~l~~~~~~~gi~v~a~~pl~~G~L~~~ 221 (344)
....+..+++|+.+......+..+....
T Consensus 309 ~~ps~e~i~~f~~~l~~~gi~vtvR~~~G~dI~aAC 344 (356)
T PRK14462 309 ERPSLEDMIKFQDYLNSKGLLCTIRESKGLDISAAC 344 (356)
T ss_pred CCCCHHHHHHHHHHHHHCCCcEEEeCCCCCchhhcC
No 227
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=26.42 E-value=4.5e+02 Score=23.16 Aligned_cols=22 Identities=14% Similarity=0.217 Sum_probs=19.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEec
Q 019200 39 SEEDGISMIKHAFSKGITFFDT 60 (344)
Q Consensus 39 ~~~~~~~~l~~Al~~Gin~~Dt 60 (344)
-.|.....++.|++.|+..|.+
T Consensus 20 ~pENT~~Af~~A~~~G~d~vE~ 41 (249)
T PRK09454 20 APENTLAAIDVGARYGHRMIEF 41 (249)
T ss_pred CChHHHHHHHHHHHcCCCEEEE
Confidence 4588999999999999998875
No 228
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=26.03 E-value=4.9e+02 Score=23.47 Aligned_cols=168 Identities=14% Similarity=0.076 Sum_probs=82.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEecccCc------C-CCc-hHHHHHHHHhcCCCCCeEEEecccccCCCCcccccCCCh
Q 019200 36 SPVSEEDGISMIKHAFSKGITFFDTADVY------G-QNA-NEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAP 107 (344)
Q Consensus 36 ~~~~~~~~~~~l~~Al~~Gin~~DtA~~Y------g-~g~-sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~ 107 (344)
...+.++..++.....+.||..++....- + .+. .++.+..+.+..++..+...+...... ++ ..+..
T Consensus 16 ~~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~----~~-~~~p~ 90 (275)
T cd07937 16 TRMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLV----GY-RHYPD 90 (275)
T ss_pred eeccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhccccccc----Cc-cCCCc
Confidence 33477888888888889999999987421 0 122 234444444333444444333321000 00 00122
Q ss_pred HHHHHHHHHHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEec-----CCCCHHHHHHHhhc---CCce
Q 019200 108 DYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGL-----SEASPGTIRRAHAV---HPIT 179 (344)
Q Consensus 108 ~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGv-----s~~~~~~l~~~~~~---~~~~ 179 (344)
+.++..++.+. ..|++.|-++ .+..+++.+.+.++..++.|+.-.+.+ +.++++.+.+..+. ...+
T Consensus 91 ~~~~~di~~~~-~~g~~~iri~-----~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~ 164 (275)
T cd07937 91 DVVELFVEKAA-KNGIDIFRIF-----DALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGAD 164 (275)
T ss_pred HHHHHHHHHHH-HcCCCEEEEe-----ecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCC
Confidence 23444444444 3354443332 222346778888889999997444344 34555555444332 2334
Q ss_pred eeec--cccccccchhhhHHHHHHHh-C--CcEEecccCC
Q 019200 180 AVQM--EWSLWTRDIEEEIIPLCREL-G--IGIVPYSPLG 214 (344)
Q Consensus 180 ~~q~--~~n~~~~~~~~~l~~~~~~~-g--i~v~a~~pl~ 214 (344)
.+-+ ....+.+..-.+++...+++ + +++..+.-++
T Consensus 165 ~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~G 204 (275)
T cd07937 165 SICIKDMAGLLTPYAAYELVKALKKEVGLPIHLHTHDTSG 204 (275)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 3333 23333333224566666543 2 4444444443
No 229
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=26.00 E-value=6e+02 Score=24.44 Aligned_cols=105 Identities=18% Similarity=0.223 Sum_probs=62.5
Q ss_pred HHHHHHHHHHH-----------hhcCCCceeEEEeccCCC-----CCCHHHHHHHHHHHHHcCcc-cEEecC---CCCHH
Q 019200 108 DYVRSCCEASL-----------KRLDVDYIDLYYQHRVDT-----SVPIEETIGEMKKLVEEGKI-KYIGLS---EASPG 167 (344)
Q Consensus 108 ~~i~~~v~~SL-----------~rLg~d~iDl~~lH~~~~-----~~~~~~~~~~L~~l~~~G~i-r~iGvs---~~~~~ 167 (344)
+.+++.++... +.++ +|++.||.-.. +.+.++..+..++..+.=.+ --|+=| ..+++
T Consensus 128 ~~i~~~~~dV~~dP~~wak~~V~~~~---aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~e 204 (389)
T TIGR00381 128 KPIRMHFEDVMEDPAEWARKCVKEFG---ADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPL 204 (389)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhC---CCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHH
Confidence 45655555544 5666 67777776432 23455677777776443332 233333 45888
Q ss_pred HHHHHhhcCCc-eeeeccccccccchhhhHHHHHHHhCCcEEecccCCccc
Q 019200 168 TIRRAHAVHPI-TAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGF 217 (344)
Q Consensus 168 ~l~~~~~~~~~-~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~pl~~G~ 217 (344)
.++++++...= ..+-..-|.=+ +. ..+.+.|+++|..|++++|..-+.
T Consensus 205 VLeaaLe~~~G~kpLL~SAt~e~-Ny-~~ia~lAk~yg~~Vvv~s~~Din~ 253 (389)
T TIGR00381 205 VLEKAAEVAEGERCLLASANLDL-DY-EKIANAAKKYGHVVLSWTIMDINM 253 (389)
T ss_pred HHHHHHHHhCCCCcEEEecCchh-hH-HHHHHHHHHhCCeEEEEcCCcHHH
Confidence 88888776221 12222222211 22 579999999999999999887554
No 230
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=25.98 E-value=1.3e+02 Score=20.49 Aligned_cols=17 Identities=12% Similarity=0.425 Sum_probs=14.9
Q ss_pred HHHHHHHHcCCCHHHHH
Q 019200 253 RIGNLAKKYNCTSAQLA 269 (344)
Q Consensus 253 ~l~~la~~~~~s~~qla 269 (344)
.+.+||+++|++..++-
T Consensus 24 ~lkdIA~~Lgvs~~tIr 40 (60)
T PF10668_consen 24 KLKDIAEKLGVSESTIR 40 (60)
T ss_pred cHHHHHHHHCCCHHHHH
Confidence 68899999999998875
No 231
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=25.95 E-value=5.6e+02 Score=24.09 Aligned_cols=134 Identities=16% Similarity=0.130 Sum_probs=80.1
Q ss_pred CCCeEEEecccccCCC------CcccccCCChHHHHHHHHHHHhhcCCCce-eEEEeccCCCCCCHHHHHHHHHHHHH-c
Q 019200 82 REKIQVATKFGIAGIG------VAGVIVKGAPDYVRSCCEASLKRLDVDYI-DLYYQHRVDTSVPIEETIGEMKKLVE-E 153 (344)
Q Consensus 82 R~~~~I~tK~~~~~~~------~~~~~~~~~~~~i~~~v~~SL~rLg~d~i-Dl~~lH~~~~~~~~~~~~~~L~~l~~-~ 153 (344)
|..+.|+|-+|....- ..+...+.+.+.|.+++......++. .+ -++++--=++....+.+.++++.+++ .
T Consensus 100 ~~t~cvSsqvGC~~~C~FC~tg~~G~~rnlt~~EI~~qv~~~~~~~~~-~~~gvV~mggGEPLln~d~v~~~l~~l~~~~ 178 (342)
T PRK14454 100 GNSICVSTQVGCRMGCKFCASTIGGMVRNLTAGEMLDQILAAQNDIGE-RISNIVLMGSGEPLDNYENVMKFLKIVNSPY 178 (342)
T ss_pred CCEEEEEcCCCCCCcCCcCCCCCCCCcccCCHHHHHHHHHHHHHHhcC-CCCCEEEECCchhhcCHHHHHHHHHHHhccc
Confidence 5556677766654321 11234578999999999988776652 23 34556555666677889999999997 5
Q ss_pred Cc---ccEEecCC--CCHHHHHHHhhcCCceeeeccccccccchh------------hhHHHHH----HHhCCcEEeccc
Q 019200 154 GK---IKYIGLSE--ASPGTIRRAHAVHPITAVQMEWSLWTRDIE------------EEIIPLC----RELGIGIVPYSP 212 (344)
Q Consensus 154 G~---ir~iGvs~--~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~------------~~l~~~~----~~~gi~v~a~~p 212 (344)
|. -|++-||+ +.+. +.++.+......+.+..+..+.... .++++.| .+.+-.+.-.-|
T Consensus 179 gi~~~~r~itvsTsG~~p~-i~~l~~~~~~~~laisLka~d~e~r~~l~pv~~~~~L~~l~~~~~~~~~~~~~rv~iey~ 257 (342)
T PRK14454 179 GLNIGQRHITLSTCGIVPK-IYELADENLQITLAISLHAPNDELRKKMMPIANKYSIEELIEACKYYINKTNRRITFEYA 257 (342)
T ss_pred ccCcCCCceEEECcCChhH-HHHHHhhcccceEEEecCCCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHhCCEEEEEEE
Confidence 76 34666665 4443 5666554322224444444443211 2444334 456777777667
Q ss_pred CCccc
Q 019200 213 LGRGF 217 (344)
Q Consensus 213 l~~G~ 217 (344)
+-.|+
T Consensus 258 LI~gv 262 (342)
T PRK14454 258 LVKGV 262 (342)
T ss_pred eECCC
Confidence 76664
No 232
>PTZ00413 lipoate synthase; Provisional
Probab=25.67 E-value=6.1e+02 Score=24.44 Aligned_cols=160 Identities=14% Similarity=0.232 Sum_probs=82.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEecccCcC----CCchHHHHHHHHhcCCC--CCeEEEecccccCCCCcccccCCChHHH
Q 019200 37 PVSEEDGISMIKHAFSKGITFFDTADVYG----QNANEVLLGKALKQLPR--EKIQVATKFGIAGIGVAGVIVKGAPDYV 110 (344)
Q Consensus 37 ~~~~~~~~~~l~~Al~~Gin~~DtA~~Yg----~g~sE~~lG~~l~~~~R--~~~~I~tK~~~~~~~~~~~~~~~~~~~i 110 (344)
..|.++..++-+++-+.|++++=.+...+ +|.++.+ .+.++..+. .++.|..=++-.. .+.+
T Consensus 176 ~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL~D~ga~~~-a~~I~~Ir~~~p~~~IevligDf~---------g~~e-- 243 (398)
T PTZ00413 176 PLDPNEPEKVAKAVAEMGVDYIVMTMVDRDDLPDGGASHV-ARCVELIKESNPELLLEALVGDFH---------GDLK-- 243 (398)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEEEcCCCCChhhHHHH-HHHHHHHHccCCCCeEEEcCCccc---------cCHH--
Confidence 35888888888888899998764333333 2223333 333443222 2455555443111 1332
Q ss_pred HHHHHHHHhhcCCCceeEEEeccCC-----------CCCCHHHHHHHHHHHHHc--Cccc-----EEecCCCCHHHHHHH
Q 019200 111 RSCCEASLKRLDVDYIDLYYQHRVD-----------TSVPIEETIGEMKKLVEE--GKIK-----YIGLSEASPGTIRRA 172 (344)
Q Consensus 111 ~~~v~~SL~rLg~d~iDl~~lH~~~-----------~~~~~~~~~~~L~~l~~~--G~ir-----~iGvs~~~~~~l~~~ 172 (344)
+|++|.---+|.| -|+.+ ....+++.|+.|+..++. |.|. -+|+..-..+.++-+
T Consensus 244 ------~l~~L~eAG~dvy-nHNLETv~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLGET~eEvie~m 316 (398)
T PTZ00413 244 ------SVEKLANSPLSVY-AHNIECVERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGETEEEVRQTL 316 (398)
T ss_pred ------HHHHHHhcCCCEE-ecccccCHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceEeeeeEecCCCCHHHHHHHH
Confidence 3333322234443 24432 123578899999988875 3332 255554333333322
Q ss_pred hhc--CCceeeec-cc-------cccc----cchhhhHHHHHHHhCCcEEecccCCc
Q 019200 173 HAV--HPITAVQM-EW-------SLWT----RDIEEEIIPLCRELGIGIVPYSPLGR 215 (344)
Q Consensus 173 ~~~--~~~~~~q~-~~-------n~~~----~~~~~~l~~~~~~~gi~v~a~~pl~~ 215 (344)
.+. ..++++.+ +| -+.. +.....+-+.+.+.|...++.+||-.
T Consensus 317 ~dLrelGVDivtIGQYL~Ps~~h~~V~~yv~P~~F~~~~~~a~~~Gf~~v~sgPlVR 373 (398)
T PTZ00413 317 RDLRTAGVSAVTLGQYLQPTKTRLKVSRYAHPKEFEMWEEEAMKMGFLYCASGPLVR 373 (398)
T ss_pred HHHHHcCCcEEeeccccCCCcccCCceeccCHHHHHHHHHHHHHcCCceEEecCccc
Confidence 222 22333322 11 0111 11125678888899999999999863
No 233
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=25.59 E-value=2.8e+02 Score=28.65 Aligned_cols=117 Identities=13% Similarity=0.130 Sum_probs=68.0
Q ss_pred HHHHHHcCcccEEecCCCCHHHHHHHhhc--CCceeeecccccccc---chhhhHHHHHHHhCCcEEecccCCcccCCCC
Q 019200 147 MKKLVEEGKIKYIGLSEASPGTIRRAHAV--HPITAVQMEWSLWTR---DIEEEIIPLCRELGIGIVPYSPLGRGFFGGK 221 (344)
Q Consensus 147 L~~l~~~G~ir~iGvs~~~~~~l~~~~~~--~~~~~~q~~~n~~~~---~~~~~l~~~~~~~gi~v~a~~pl~~G~L~~~ 221 (344)
++.+....++-.+--++.+.+.+.++.+. ..+.-+.+ +|-++. .-...+.+++++-++-++.-+.-+..
T Consensus 147 ~~~~~~~~~~~~~~QTT~~~~~~~~~~~~l~~~~~~~~~-~~tiC~at~~Rq~a~~~la~~~d~~~vvGg~~SsN----- 220 (647)
T PRK00087 147 AEKLPFDKKICVVSQTTEKQENFEKVLKELKKKGKEVKV-FNTICNATEVRQEAAEKLAKKVDVMIVVGGKNSSN----- 220 (647)
T ss_pred HhhCCCCCCEEEEEcCCCcHHHHHHHHHHHHHhCCCccc-CCCcchhhhhHHHHHHHHHhhCCEEEEECCCCCcc-----
Confidence 33333345566666667777766555443 11111122 222222 11245888888777777663332210
Q ss_pred CCCCCCCCCcccccccCccccchhhhHHHHHHHHHHHHHcCC------CHHHHHHHHHHhCCCCeEeecCCCCHHHHHH-
Q 019200 222 AVVENVPADSFLHFLPRFKGENLDRNKSIYFRIGNLAKKYNC------TSAQLALAWVLGQGDDVVPIPGTTKMKNLDD- 294 (344)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~------s~~qlal~~~l~~~~v~~vi~G~~~~~~l~~- 294 (344)
...|.++|++.|. ++.++.-.|.-.... ..+..|+|+|+.+-+
T Consensus 221 -----------------------------t~~L~~i~~~~~~~~~~ie~~~el~~~~~~~~~~-vgitagaStP~~~i~~ 270 (647)
T PRK00087 221 -----------------------------TTKLYEICKSNCTNTIHIENAGELPEEWFKGVKI-IGVTAGASTPDWIIEE 270 (647)
T ss_pred -----------------------------HHHHHHHHHHHCCCEEEECChHHCCHHHhCCCCE-EEEEeccCCCHHHHHH
Confidence 1578888888773 688999999876654 578899999996544
Q ss_pred HHhhc
Q 019200 295 NIDSL 299 (344)
Q Consensus 295 nl~a~ 299 (344)
.+..+
T Consensus 271 v~~~l 275 (647)
T PRK00087 271 VIKKM 275 (647)
T ss_pred HHHHH
Confidence 33433
No 234
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=25.52 E-value=2.8e+02 Score=23.95 Aligned_cols=88 Identities=8% Similarity=0.143 Sum_probs=52.8
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecCC-CCHHHHHHHhhcCCceeeecc
Q 019200 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE-ASPGTIRRAHAVHPITAVQME 184 (344)
Q Consensus 106 ~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~~ 184 (344)
+.+...+-++ .|-+-|+..+-+=+ -. .+..+.+++++++..=-.||..+ .+.++++++++... .++..
T Consensus 14 ~~~~a~~ia~-al~~gGi~~iEit~---~t-----p~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA-~FivS- 82 (201)
T PRK06015 14 DVEHAVPLAR-ALAAGGLPAIEITL---RT-----PAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGS-RFIVS- 82 (201)
T ss_pred CHHHHHHHHH-HHHHCCCCEEEEeC---CC-----ccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCC-CEEEC-
Confidence 4455544444 45556655544432 11 23455666666554334688876 48888888888643 22222
Q ss_pred ccccccchhhhHHHHHHHhCCcEEe
Q 019200 185 WSLWTRDIEEEIIPLCRELGIGIVP 209 (344)
Q Consensus 185 ~n~~~~~~~~~l~~~~~~~gi~v~a 209 (344)
+ ....+++++|+++||.++.
T Consensus 83 --P---~~~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 83 --P---GTTQELLAAANDSDVPLLP 102 (201)
T ss_pred --C---CCCHHHHHHHHHcCCCEeC
Confidence 2 2236899999999999986
No 235
>PRK08084 DNA replication initiation factor; Provisional
Probab=25.48 E-value=2.5e+02 Score=24.60 Aligned_cols=44 Identities=9% Similarity=0.230 Sum_probs=32.9
Q ss_pred eeEEEeccCCCC---CCH-HHHHHHHHHHHHcCcccEEecCCCCHHHH
Q 019200 126 IDLYYQHRVDTS---VPI-EETIGEMKKLVEEGKIKYIGLSEASPGTI 169 (344)
Q Consensus 126 iDl~~lH~~~~~---~~~-~~~~~~L~~l~~~G~ir~iGvs~~~~~~l 169 (344)
.|++.+...+.. ..+ +++++.+..+++.|+++.|+.|+.++..+
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l 145 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQL 145 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHc
Confidence 588888776532 222 35678899999999999999999777663
No 236
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=25.08 E-value=1.3e+02 Score=26.70 Aligned_cols=76 Identities=16% Similarity=0.302 Sum_probs=44.7
Q ss_pred CCCccccccccccccCCCCCCCC--CCHHHHHHHHHHHH----HcCCCEEeccc--CcCCCchHHHHHHHHh---c----
Q 019200 15 TQGLEVSKLGYGCMNLSGGYSSP--VSEEDGISMIKHAF----SKGITFFDTAD--VYGQNANEVLLGKALK---Q---- 79 (344)
Q Consensus 15 ~tg~~vs~lglG~~~~~~~~~~~--~~~~~~~~~l~~Al----~~Gin~~DtA~--~Yg~g~sE~~lG~~l~---~---- 79 (344)
.+|+.++.+||.+=+=-- +|+. ...+++.+++..|+ +.||+.|--|. .|=.-.+|....+++. .
T Consensus 65 etgv~ipSmClSaHRRfP-fGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~d~eT~~rFi~g~~~a~~l 143 (287)
T COG3623 65 ETGVRIPSMCLSAHRRFP-FGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEADEETRQRFIEGLKWAVEL 143 (287)
T ss_pred HhCCCccchhhhhhccCC-CCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccCCHHHHHHHHHHHHHHHHH
Confidence 589999999997632111 2332 24456777777765 68999998873 2211224444444443 2
Q ss_pred CCCCCeEEEecc
Q 019200 80 LPREKIQVATKF 91 (344)
Q Consensus 80 ~~R~~~~I~tK~ 91 (344)
..+-.|.++.-+
T Consensus 144 A~~aqV~lAvEi 155 (287)
T COG3623 144 AARAQVMLAVEI 155 (287)
T ss_pred HHhhccEEEeee
Confidence 246667776665
No 237
>PRK09389 (R)-citramalate synthase; Provisional
Probab=24.85 E-value=7e+02 Score=24.80 Aligned_cols=26 Identities=8% Similarity=0.308 Sum_probs=22.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEeccc
Q 019200 37 PVSEEDGISMIKHAFSKGITFFDTAD 62 (344)
Q Consensus 37 ~~~~~~~~~~l~~Al~~Gin~~DtA~ 62 (344)
..+.++-.++.+...+.||..++.+.
T Consensus 20 ~~s~e~K~~ia~~L~~~Gv~~IE~G~ 45 (488)
T PRK09389 20 SLTPEEKLEIARKLDELGVDVIEAGS 45 (488)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 45788899999999999999999863
No 238
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=24.82 E-value=4.7e+02 Score=22.84 Aligned_cols=139 Identities=12% Similarity=0.132 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHcCCCEEecccCcCCCc-hHHHHHHHHhcCCCCCeEEEecccccCCCCcccccCCChHHHHHHHHHHHh
Q 019200 41 EDGISMIKHAFSKGITFFDTADVYGQNA-NEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLK 119 (344)
Q Consensus 41 ~~~~~~l~~Al~~Gin~~DtA~~Yg~g~-sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~SL~ 119 (344)
....+++..|.+.|+..+=.++|..... .+. ..+.+ . .+-|-+-+-.. ....+.+..-+ +
T Consensus 16 ~~~~e~i~~A~~~Gl~~i~itdH~~~~~~~~~-~~~~~---~--~i~Il~GiEi~---------~~~~~~~~~~~----~ 76 (237)
T PRK00912 16 DTVLRLISEASHLGYSGIALSNHSDKYPESKP-ELEDL---L--GFEIFRGVEIV---------ASNPSKLRGLV----G 76 (237)
T ss_pred chHHHHHHHHHHCCCCEEEEecCcccccchhH-HHHHh---c--CCcEEeeEEEe---------cCCHHHHHHHH----H
Confidence 4578999999999999887776643210 111 11111 1 23332222111 12334443333 3
Q ss_pred hcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecCCC-------CHHHHHHHhhcCCceeeeccccccccc-
Q 019200 120 RLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA-------SPGTIRRAHAVHPITAVQMEWSLWTRD- 191 (344)
Q Consensus 120 rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~-------~~~~l~~~~~~~~~~~~q~~~n~~~~~- 191 (344)
+.. ..+|++.+|.-+ +. ....+.+.+.|.-||-... ....++.+.+. . .++.+.++.+...
T Consensus 77 ~~~-~~~d~v~v~~~~-----~~---~~~~a~~~~~vdIi~hp~~~~~~~~~~~~~~~~a~~~-g-v~lEIn~s~~~~~~ 145 (237)
T PRK00912 77 KFR-KKVDVLAVHGGD-----EK---VNRAACENPRVDILSHPYTKRKDSGINHVLAKEAARN-N-VAIEFNLRDILKSR 145 (237)
T ss_pred hcc-CcccEEEEeCCC-----HH---HHHHHHccCCCcEEeCccccCCCCCcCHHHHHHHHHC-C-eEEEEEchHhhhhc
Confidence 321 356888888211 22 2235788899888887542 22223333332 2 2355555543211
Q ss_pred ---------hhhhHHHHHHHhCCcEEe
Q 019200 192 ---------IEEEIIPLCRELGIGIVP 209 (344)
Q Consensus 192 ---------~~~~l~~~~~~~gi~v~a 209 (344)
....++..|++.|+.++.
T Consensus 146 ~~~r~~~~~~~~~~~~~~~~~g~piii 172 (237)
T PRK00912 146 GGRRARTLSNFRDNLALARKYDFPLVL 172 (237)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 114689999999988875
No 239
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=24.81 E-value=5.9e+02 Score=23.93 Aligned_cols=116 Identities=19% Similarity=0.222 Sum_probs=71.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEecccCcCC----------------Cc--hHHHHHHHHhcCCCCCeEEEecccccCCCCc
Q 019200 38 VSEEDGISMIKHAFSKGITFFDTADVYGQ----------------NA--NEVLLGKALKQLPREKIQVATKFGIAGIGVA 99 (344)
Q Consensus 38 ~~~~~~~~~l~~Al~~Gin~~DtA~~Yg~----------------g~--sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~ 99 (344)
++.+.-.++.++|=+.|+-++=|--.+.. |+ ...++-...+ .-+.+.++|-.
T Consensus 87 ~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~--~~kPiIlSTGm-------- 156 (347)
T COG2089 87 TPLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAK--KGKPIILSTGM-------- 156 (347)
T ss_pred CCHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHh--cCCCEEEEccc--------
Confidence 56777888999999999999876543331 10 1222222222 22356666665
Q ss_pred ccccCCChHHHHHHHHHHHhhcCCCceeEEEeccCCCC-CCHHHH-HHHHHHHHHcCcccEEecCCCCHHHHHHH
Q 019200 100 GVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS-VPIEET-IGEMKKLVEEGKIKYIGLSEASPGTIRRA 172 (344)
Q Consensus 100 ~~~~~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~-~~~~~~-~~~L~~l~~~G~ir~iGvs~~~~~~l~~~ 172 (344)
.+-+.|+++++. +++-|.. |+.+||+.... .+.+++ +..|..|.+.= .--||+|.|+..-+.-+
T Consensus 157 -----a~~~ei~~av~~-~r~~g~~--~i~LLhC~s~YPap~ed~NL~~i~~l~~~F-n~~vGlSDHT~g~~a~l 222 (347)
T COG2089 157 -----ATIEEIEEAVAI-LRENGNP--DIALLHCTSAYPAPFEDVNLKAIPKLAEAF-NAIVGLSDHTLGILAPL 222 (347)
T ss_pred -----ccHHHHHHHHHH-HHhcCCC--CeEEEEecCCCCCCHHHhhHHHHHHHHHHh-CCccccccCccchhHHH
Confidence 356778888874 4444433 99999997532 344443 55666665543 55799999987654443
No 240
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=24.76 E-value=5.5e+02 Score=23.57 Aligned_cols=104 Identities=13% Similarity=0.076 Sum_probs=54.3
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecCCC-CHHHHHHHhhcCCceeeecc
Q 019200 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA-SPGTIRRAHAVHPITAVQME 184 (344)
Q Consensus 106 ~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q~~ 184 (344)
+++.+++.++..++ .+-+.+--+-++..+...+.+.....++..++.|+--.+=++.. +...+..++.......+---
T Consensus 138 ~~~~~~~~~~~~~~-~~~~~vvg~~l~~~e~~~~~~~~~~~~~~A~~~g~~i~~Ha~E~~~~~~~~~~~~~~g~~ri~Hg 216 (324)
T TIGR01430 138 QPEAAEETLELAKP-YKEQTIVGFGLAGDERGGPPPDFVRAFAIARELGLHLTVHAGELGGPESVREALDDLGATRIGHG 216 (324)
T ss_pred CHHHHHHHHHHHHh-hccCcEEEecCCCCCCCCCHHHHHHHHHHHHHCCCCeEEecCCCCChHHHHHHHHHcCchhcchh
Confidence 45677777776664 33222322334443334446667777888888887655555543 23344444432222211111
Q ss_pred ccccccchhhhHHHHHHHhCCcEEecccCC
Q 019200 185 WSLWTRDIEEEIIPLCRELGIGIVPYSPLG 214 (344)
Q Consensus 185 ~n~~~~~~~~~l~~~~~~~gi~v~a~~pl~ 214 (344)
+++ .. ..+.++.++++|+.+.. .|.+
T Consensus 217 ~~l-~~--~~~~i~~l~~~gi~v~~-cP~S 242 (324)
T TIGR01430 217 VRA-LE--DPELLKRLAQENITLEV-CPTS 242 (324)
T ss_pred hhh-cc--CHHHHHHHHHcCceEEE-CCcc
Confidence 111 11 13589999999998753 3443
No 241
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=24.55 E-value=6.1e+02 Score=24.00 Aligned_cols=175 Identities=11% Similarity=0.142 Sum_probs=0.0
Q ss_pred cccCCCCCCCCCCHHHHHHHH---HHHHHc---CCCEEecccCcCCCc---hHHHHHHHHhcCCCC--------CeEEEe
Q 019200 27 CMNLSGGYSSPVSEEDGISMI---KHAFSK---GITFFDTADVYGQNA---NEVLLGKALKQLPRE--------KIQVAT 89 (344)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l---~~Al~~---Gin~~DtA~~Yg~g~---sE~~lG~~l~~~~R~--------~~~I~t 89 (344)
|......++...+.++..+.+ ...++. |++.++---.-|.|+ +-..+-++++....+ .+.|+|
T Consensus 119 C~tg~~g~~rnlt~~EI~~qv~~~~~~~~~~g~g~~~i~nIvfmGmGEPLln~~~v~~~l~~l~~~~Gl~~~~r~itvsT 198 (354)
T PRK14460 119 CSTGTMGFERNMTMGEILGQVLVAREHLGDNGPDHPILRNLVFMGMGEPLLNLDEVMRSLRTLNNEKGLNFSPRRITVST 198 (354)
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHHHHhhccCCCcceeEEEEecCCcccCCHHHHHHHHHHHhhhhccCCCCCeEEEEC
Q ss_pred cccccCCCCcccccCCChHHHHHHHHHHHhhcCCCceeEEEeccCCC-----------CCCHHHHHHHHHHHHHcCcccE
Q 019200 90 KFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDT-----------SVPIEETIGEMKKLVEEGKIKY 158 (344)
Q Consensus 90 K~~~~~~~~~~~~~~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~-----------~~~~~~~~~~L~~l~~~G~ir~ 158 (344)
=. +...++ -|...+...+++ .||.+++ ..+++++++++.+...+..-+-
T Consensus 199 ~G------------------~~~~i~-~L~~~~l~~L~i-SLha~~~e~r~~i~p~~~~~~l~~ll~al~~~~~~~~~~v 258 (354)
T PRK14460 199 CG------------------IEKGLR-ELGESGLAFLAV-SLHAPNQELRERIMPKAARWPLDDLIAALKSYPLKTRERV 258 (354)
T ss_pred CC------------------ChHHHH-HHHhCCCcEEEE-eCCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhcCCeE
Q ss_pred E-------ecCCC--CHHHHHHHhhcCCceeeeccccccccchh--------hhHHHHHHHhCCcEEecccCCcccCCCC
Q 019200 159 I-------GLSEA--SPGTIRRAHAVHPITAVQMEWSLWTRDIE--------EEIIPLCRELGIGIVPYSPLGRGFFGGK 221 (344)
Q Consensus 159 i-------Gvs~~--~~~~l~~~~~~~~~~~~q~~~n~~~~~~~--------~~l~~~~~~~gi~v~a~~pl~~G~L~~~ 221 (344)
. |+... ....+.+++...+..++-++||......- ....+..+++|+.+......+.-+....
T Consensus 259 ~iey~LI~GvNDs~ed~~~l~~~l~~~~~~VnLIpyn~~~g~~y~~p~~e~v~~f~~~l~~~Gi~vtir~~~G~di~aaC 338 (354)
T PRK14460 259 TFEYLLLGGVNDSLEHARELVRLLSRTKCKLNLIVYNPAEGLPYSAPTEERILAFEKYLWSKGITAIIRKSKGQDIKAAC 338 (354)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCCchHhcc
No 242
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=24.50 E-value=5.6e+02 Score=23.59 Aligned_cols=168 Identities=15% Similarity=0.109 Sum_probs=96.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEecccCcCC---CchHHH----HHHHHhc-----------CCCCCeEEEecccccCCCCc-
Q 019200 39 SEEDGISMIKHAFSKGITFFDTADVYGQ---NANEVL----LGKALKQ-----------LPREKIQVATKFGIAGIGVA- 99 (344)
Q Consensus 39 ~~~~~~~~l~~Al~~Gin~~DtA~~Yg~---g~sE~~----lG~~l~~-----------~~R~~~~I~tK~~~~~~~~~- 99 (344)
.++..+++-...++.|-+.++|+. |.- |-+|++ +.+.++. ...+...|+-=+|+....-.
T Consensus 41 ~peiv~~vh~df~~aGa~ii~T~T-Yqa~~~~~~e~~~~~~~~~l~~~sv~la~~ard~~g~~~~~iagsiGP~ga~~a~ 119 (300)
T COG2040 41 EPEIVRNVHADFLRAGADIITTAT-YQATPEGFAERVSEDEAKQLIRRSVELARAARDAYGEENQNIAGSLGPYGAALAD 119 (300)
T ss_pred CHHHHHHHHHHHHHhcCcEEeehh-hhcCHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccccccceeccchhhhcCh
Confidence 456678888888999999999874 532 223332 2221111 23445556777776543211
Q ss_pred c--cccCCChHHHHHHHHHHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecCCCC---------HHH
Q 019200 100 G--VIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEAS---------PGT 168 (344)
Q Consensus 100 ~--~~~~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~---------~~~ 168 (344)
. ..+..+.+.+.+-.+.-++.|.-.-+|++.+--...-...+.+++.++++ +|=-+|+++-.+ ...
T Consensus 120 Ey~g~Y~~~~d~~~~fh~~rie~l~~ag~Dlla~ETip~i~Ea~Aiv~l~~~~---s~p~wISfT~~d~~~lr~Gt~l~e 196 (300)
T COG2040 120 EYRGDYGASQDALYKFHRPRIEALNEAGADLLACETLPNITEAEAIVQLVQEF---SKPAWISFTLNDDTRLRDGTPLSE 196 (300)
T ss_pred hhcCccCccHHHHHHHHHHHHHHHHhCCCcEEeecccCChHHHHHHHHHHHHh---CCceEEEEEeCCCCccCCCccHHH
Confidence 1 12344556555555666666665569999887765555556677777777 888888887432 222
Q ss_pred HHHHhhc-CCceeeeccccccccchhhhHHHHH--HHhCCcEEeccc
Q 019200 169 IRRAHAV-HPITAVQMEWSLWTRDIEEEIIPLC--RELGIGIVPYSP 212 (344)
Q Consensus 169 l~~~~~~-~~~~~~q~~~n~~~~~~~~~l~~~~--~~~gi~v~a~~p 212 (344)
+...++. ..+..+.+.+.-.+. -..+++.. ...++++++|--
T Consensus 197 aa~~~~~~~~iaa~gvNC~~p~~--~~a~i~~l~~~~~~~piivYPN 241 (300)
T COG2040 197 AAAILAGLPNIAALGVNCCHPDH--IPAAIEELSKLLTGKPIIVYPN 241 (300)
T ss_pred HHHHHhcCcchhheeeccCChhh--hHHHHHHHHhcCCCCceEEcCC
Confidence 2222222 344444444443333 34566666 345788888843
No 243
>PF14502 HTH_41: Helix-turn-helix domain
Probab=24.47 E-value=78 Score=20.54 Aligned_cols=29 Identities=21% Similarity=0.272 Sum_probs=24.0
Q ss_pred HHHHHHHHHcCCC--HHHHHHHHHHhCCCCe
Q 019200 252 FRIGNLAKKYNCT--SAQLALAWVLGQGDDV 280 (344)
Q Consensus 252 ~~l~~la~~~~~s--~~qlal~~~l~~~~v~ 280 (344)
+.+.+++++++++ ..|-||.++-..+.|.
T Consensus 7 ~tI~e~~~~~~vs~GtiQ~Alk~Le~~gaI~ 37 (48)
T PF14502_consen 7 PTISEYSEKFGVSRGTIQNALKFLEENGAIK 37 (48)
T ss_pred CCHHHHHHHhCcchhHHHHHHHHHHHCCcEE
Confidence 5688899999887 6799999999888643
No 244
>PF01244 Peptidase_M19: Membrane dipeptidase (Peptidase family M19); InterPro: IPR008257 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of peptidases belong to the MEROPS peptidase family M19 (membrane dipeptidase family, clan MJ). The protein fold of the peptidase domain for members of this family resembles that of Klebsiella urease, the type example for clan MJ. Renal dipeptidase (rDP) (3.4.13.19 from EC), also known as microsomal dipeptidase, is a zinc-dependent metalloenzyme that hydrolyzes a wide range of dipeptides. It is involved in renal metabolism of glutathione and its conjugates. It is a homodimeric disulphide-linked glycoprotein attached to the renal brush border microvilli membrane by a GPI-anchor. A glutamate residue has recently been shown [,] to be important for the catalytic activity of rDP. rDP seems to be evolutionary related to hypothetical proteins in the PQQ biosynthesis operons of Acinetobacter calcoaceticus and Klebsiella pneumoniae.; GO: 0008235 metalloexopeptidase activity, 0008239 dipeptidyl-peptidase activity, 0016805 dipeptidase activity, 0006508 proteolysis; PDB: 3NEH_B 2RAG_D 3LU2_A 3B40_A 3LY0_A 3FDG_B 2I5G_B 3S2J_A 3S2N_A 3S2L_A ....
Probab=24.41 E-value=1.5e+02 Score=27.60 Aligned_cols=107 Identities=13% Similarity=0.195 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHcCCCEEecccCcCCCchHHHHHHHHhcCCCCCeEEEecccccCCCCcccccCCChHHHHHHHHHHHhh
Q 019200 41 EDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKR 120 (344)
Q Consensus 41 ~~~~~~l~~Al~~Gin~~DtA~~Yg~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~SL~r 120 (344)
+--+++|++.-+.|+ .+|.|.. ||+.+-++++- -+..+|+|-.+...-.. ...+.+.+.+ +..-++
T Consensus 160 ~~G~~vV~~mn~lGm-~vDvSH~-----s~~t~~Dv~~~--s~~PviaSHSn~ral~~--h~RNltDe~i----raia~~ 225 (320)
T PF01244_consen 160 PFGREVVREMNRLGM-LVDVSHL-----SEKTFWDVLEI--SKKPVIASHSNARALCP--HPRNLTDEQI----RAIAER 225 (320)
T ss_dssp HHHHHHHHHHHHHT--EEE-TTB------HHHHHHHHHH---SSEEEECCEEBTTTS----TTSB-HHHH----HHHHHT
T ss_pred hHHHHHHHHHHHcCC-eeeeccC-----CHHHHHHHHhh--cCCCEEEeccChHhhCC--CCCCCCHHHH----HHHHHC
Confidence 457999999999999 9999865 78999899874 34688998877554221 1123333333 333333
Q ss_pred cCCCceeEEEeccC-----CCCCCHHHHHHHHHHHHHcCcccEEecCC
Q 019200 121 LDVDYIDLYYQHRV-----DTSVPIEETIGEMKKLVEEGKIKYIGLSE 163 (344)
Q Consensus 121 Lg~d~iDl~~lH~~-----~~~~~~~~~~~~L~~l~~~G~ir~iGvs~ 163 (344)
=| .|=+.++... +....++++++.++.+++.+=+.+||+.+
T Consensus 226 GG--viGi~~~~~fl~~~~~~~~~~~~~~~Hi~y~~~l~G~dhVgiGs 271 (320)
T PF01244_consen 226 GG--VIGINFYPAFLGDDWDPRASLDDLVDHIDYIVDLVGIDHVGIGS 271 (320)
T ss_dssp T---EEEEESSHHHHSTTHSSG-BHHHHHHHHHHHHHHH-GGGEEEE-
T ss_pred Cc--EEEEEcchhhhcccccccccHHHHHHHHHHHHHhcCCCeEEECc
Confidence 33 3555544332 24457889999999999888799999965
No 245
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=24.03 E-value=2.2e+02 Score=25.37 Aligned_cols=96 Identities=16% Similarity=0.166 Sum_probs=59.1
Q ss_pred HHHHHHHhhcCCCceeEEEeccCCCCCCHHHHH-HHHHHHHHcCcccEEecCCC-CH----HHHH---HHhhcCCceeee
Q 019200 112 SCCEASLKRLDVDYIDLYYQHRVDTSVPIEETI-GEMKKLVEEGKIKYIGLSEA-SP----GTIR---RAHAVHPITAVQ 182 (344)
Q Consensus 112 ~~v~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~-~~L~~l~~~G~ir~iGvs~~-~~----~~l~---~~~~~~~~~~~q 182 (344)
+.++..|+-+| +|||++=+-|-......++.+ +.++-.++-|.--+.| .++ .. ..+. +.++...|+++.
T Consensus 12 ~~~~d~Le~~g-~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~V~v~~G-Gtl~E~~~~q~~~~~Yl~~~k~lGf~~IE 89 (237)
T TIGR03849 12 KFVEDYLKVCG-DYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPG-GTLFEIAHSKGKFDEYLNECDELGFEAVE 89 (237)
T ss_pred HHHHHHHHHhh-hheeeEEecCceEeeccHHHHHHHHHHHHHcCCeEeCC-ccHHHHHHHhhhHHHHHHHHHHcCCCEEE
Confidence 44577888888 999999999876554444444 4444555667766666 211 11 1122 223335677887
Q ss_pred ccccccccchh--hhHHHHHHHhCCcEEe
Q 019200 183 MEWSLWTRDIE--EEIIPLCRELGIGIVP 209 (344)
Q Consensus 183 ~~~n~~~~~~~--~~l~~~~~~~gi~v~a 209 (344)
+.-..+.-..+ ..+++.++++|..+..
T Consensus 90 iS~G~~~i~~~~~~rlI~~~~~~g~~v~~ 118 (237)
T TIGR03849 90 ISDGSMEISLEERCNLIERAKDNGFMVLS 118 (237)
T ss_pred EcCCccCCCHHHHHHHHHHHHhCCCeEec
Confidence 76665554332 4688888888888764
No 246
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=24.02 E-value=6e+02 Score=23.78 Aligned_cols=109 Identities=18% Similarity=0.254 Sum_probs=65.9
Q ss_pred CCCHHHHHHHHH-------HHHHcCCCEEecccCcCCCchHHHHHHHHhc--CCC-CCeEEEecccccCCCCcccccCCC
Q 019200 37 PVSEEDGISMIK-------HAFSKGITFFDTADVYGQNANEVLLGKALKQ--LPR-EKIQVATKFGIAGIGVAGVIVKGA 106 (344)
Q Consensus 37 ~~~~~~~~~~l~-------~Al~~Gin~~DtA~~Yg~g~sE~~lG~~l~~--~~R-~~~~I~tK~~~~~~~~~~~~~~~~ 106 (344)
.++.++..++++ .|.+.|+..+|---..|. ++.++|.. .+| +++ |-. ....
T Consensus 130 ~mt~~eI~~ii~~f~~AA~ra~~aGfDgVeih~ahGy-----Ll~qFlsp~~N~RtD~y------GGs--------lenR 190 (343)
T cd04734 130 AMEEEDIEEIIAAFADAARRCQAGGLDGVELQAAHGH-----LIDQFLSPLTNRRTDEY------GGS--------LENR 190 (343)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccch-----HHHHhhCCCcCCCCCcC------CCC--------HHHH
Confidence 467777665554 455789999986443332 78888864 233 222 111 1123
Q ss_pred hHHHHHHHHHHHhhcCCCceeEEEeccCCC---CCCHHHHHHHHHHHHHcCcccEEecCCC
Q 019200 107 PDYVRSCCEASLKRLDVDYIDLYYQHRVDT---SVPIEETIGEMKKLVEEGKIKYIGLSEA 164 (344)
Q Consensus 107 ~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~---~~~~~~~~~~L~~l~~~G~ir~iGvs~~ 164 (344)
...+.+-++...+..|.+.+=-+=|-+.+. -...+++.+.+..|.+.|.+.+|=||..
T Consensus 191 ~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g 251 (343)
T cd04734 191 MRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSAG 251 (343)
T ss_pred hHHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCC
Confidence 466777777778888855321122222221 1346788888889999998888888754
No 247
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=23.89 E-value=2.9e+02 Score=25.67 Aligned_cols=40 Identities=15% Similarity=0.308 Sum_probs=27.1
Q ss_pred HHHHhhcCCceeeecccccccc--chh--hhHHHHHHHhCCcEEe
Q 019200 169 IRRAHAVHPITAVQMEWSLWTR--DIE--EEIIPLCRELGIGIVP 209 (344)
Q Consensus 169 l~~~~~~~~~~~~q~~~n~~~~--~~~--~~l~~~~~~~gi~v~a 209 (344)
+.++++. .|.++|+.-|-+.- +.+ +++.++|+..|+.|-+
T Consensus 90 i~~ai~~-GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEa 133 (307)
T PRK05835 90 CEKAVKA-GFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEA 133 (307)
T ss_pred HHHHHHc-CCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 4444443 36777776665432 222 7899999999999987
No 248
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=23.81 E-value=6.1e+02 Score=23.74 Aligned_cols=25 Identities=12% Similarity=0.222 Sum_probs=17.1
Q ss_pred CCCHHHHHHHHH-------HHHHcCCCEEecc
Q 019200 37 PVSEEDGISMIK-------HAFSKGITFFDTA 61 (344)
Q Consensus 37 ~~~~~~~~~~l~-------~Al~~Gin~~DtA 61 (344)
.++.++..++++ .|.+.|+..++--
T Consensus 141 ~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih 172 (338)
T cd02933 141 ALTTEEIPGIVADFRQAARNAIEAGFDGVEIH 172 (338)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 457777666554 4557899999863
No 249
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=23.78 E-value=1.2e+02 Score=27.07 Aligned_cols=97 Identities=16% Similarity=0.126 Sum_probs=52.5
Q ss_pred HHHHHHHhhcCCCceeEEEeccCCCCCCHHHHH-HHHHHHHHcCcccEEecCC-------CCHHHHHHHhhcCCceeeec
Q 019200 112 SCCEASLKRLDVDYIDLYYQHRVDTSVPIEETI-GEMKKLVEEGKIKYIGLSE-------ASPGTIRRAHAVHPITAVQM 183 (344)
Q Consensus 112 ~~v~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~-~~L~~l~~~G~ir~iGvs~-------~~~~~l~~~~~~~~~~~~q~ 183 (344)
..++..|+-.| +|||++=+-|-.....-++++ +.++-+++-|.--+.|=+- -..++..+.++...|+.+.+
T Consensus 25 ~~~~dlLe~ag-~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGtl~E~a~~q~~~~~yl~~~k~lGf~~IEi 103 (244)
T PF02679_consen 25 RYLEDLLESAG-DYIDFLKFGWGTSALYPEEILKEKIDLAHSHGVYVYPGGTLFEVAYQQGKFDEYLEECKELGFDAIEI 103 (244)
T ss_dssp HHHHHHHHHHG-GG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHHHHHHHHTT-HHHHHHHHHHCT-SEEEE
T ss_pred HHHHHHHHHhh-hhccEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHHHHHHHhcChHHHHHHHHHHcCCCEEEe
Confidence 34577788888 999999999876544333444 4444444555544444321 12233333444467788887
Q ss_pred cccccccchh--hhHHHHHHHhCCcEEe
Q 019200 184 EWSLWTRDIE--EEIIPLCRELGIGIVP 209 (344)
Q Consensus 184 ~~n~~~~~~~--~~l~~~~~~~gi~v~a 209 (344)
.-..+.-..+ ..++..++++|..|+.
T Consensus 104 SdGti~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 104 SDGTIDLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp --SSS---HHHHHHHHHHHCCTTSEEEE
T ss_pred cCCceeCCHHHHHHHHHHHHHCCCEEee
Confidence 6665554332 4688888888887775
No 250
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=23.72 E-value=5.2e+02 Score=22.95 Aligned_cols=40 Identities=10% Similarity=0.123 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEecccCcCCCchH-HHHHHHHh
Q 019200 38 VSEEDGISMIKHAFSKGITFFDTADVYGQNANE-VLLGKALK 78 (344)
Q Consensus 38 ~~~~~~~~~l~~Al~~Gin~~DtA~~Yg~g~sE-~~lG~~l~ 78 (344)
.+.++..++++.-.+.||..++++--. .+..+ +.+....+
T Consensus 17 ~~~~~k~~i~~~L~~~Gv~~iE~g~p~-~~~~~~e~~~~l~~ 57 (259)
T cd07939 17 FSREEKLAIARALDEAGVDEIEVGIPA-MGEEEREAIRAIVA 57 (259)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC-CCHHHHHHHHHHHh
Confidence 477889999999999999999996221 23344 45544443
No 251
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=23.71 E-value=3.2e+02 Score=26.63 Aligned_cols=88 Identities=15% Similarity=0.211 Sum_probs=54.8
Q ss_pred HHhhcCCCceeEEEeccCCC-CCCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhc--------CCceeeeccccc
Q 019200 117 SLKRLDVDYIDLYYQHRVDT-SVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV--------HPITAVQMEWSL 187 (344)
Q Consensus 117 SL~rLg~d~iDl~~lH~~~~-~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~--------~~~~~~q~~~n~ 187 (344)
-++.||++|. ++..|-. -.. ..+....+-+.|-+..+|....+++++++.+.. .||-++.+ .++
T Consensus 6 f~~~lgiryP---ii~gpMa~Gis---s~eLVaAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~ 78 (418)
T cd04742 6 FKEDYGLRYA---YVAGAMARGIA---SAELVVAMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSP 78 (418)
T ss_pred HHHHhCCCcc---EECCcccCCCC---CHHHHHHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCC
Confidence 3566777653 3333332 122 234555666889999999999999888776543 24554443 222
Q ss_pred cccchhhhHHHHHHHhCCcEEecc
Q 019200 188 WTRDIEEEIIPLCRELGIGIVPYS 211 (344)
Q Consensus 188 ~~~~~~~~l~~~~~~~gi~v~a~~ 211 (344)
-+...+..+++.+.++||.++..+
T Consensus 79 ~~~~~e~~~v~l~le~gV~~ve~s 102 (418)
T cd04742 79 DEPELEEGLVDLFLRHGVRVVEAS 102 (418)
T ss_pred CCchhHHHHHHHHHHcCCCEEEec
Confidence 222224578999999999887654
No 252
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.58 E-value=3.7e+02 Score=23.99 Aligned_cols=40 Identities=15% Similarity=0.164 Sum_probs=25.2
Q ss_pred eEEEeccCCC--------------CCCHHHHHHHHHHHHHcCcccEEecCCCCHH
Q 019200 127 DLYYQHRVDT--------------SVPIEETIGEMKKLVEEGKIKYIGLSEASPG 167 (344)
Q Consensus 127 Dl~~lH~~~~--------------~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~ 167 (344)
+-+++|-|-. ..+.++..+.++..+. -.--++|+.||-..
T Consensus 78 ~evlih~PmeP~~~~~~e~gtL~~~~s~~e~~~rl~~a~~-~v~~~~GlnNhmGs 131 (250)
T COG2861 78 HEVLIHMPMEPFSYPKIEPGTLRPGMSAEEILRRLRKAMN-KVPDAVGLNNHMGS 131 (250)
T ss_pred CEEEEeccCCcccCCCCCCCCcccCCCHHHHHHHHHHHHh-hCccceeehhhhhh
Confidence 4577888721 1234677777777765 33457888887443
No 253
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=23.54 E-value=7.5e+02 Score=24.72 Aligned_cols=104 Identities=15% Similarity=0.161 Sum_probs=54.5
Q ss_pred CcCCCchHHHHHHHHhc----CCCCCeEEEecccccCCCCcccccCCChHHHHHHHHHHHhhcCCCceeEEEeccCCCCC
Q 019200 63 VYGQNANEVLLGKALKQ----LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSV 138 (344)
Q Consensus 63 ~Yg~g~sE~~lG~~l~~----~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~ 138 (344)
..+.| +|+.+-+++.+ .+.+-++|.|-+. .+-|-..++...++++.+ ++++.++.+....
T Consensus 64 dlv~G-~~ekL~~aI~~~~~~~~P~~I~V~sTC~--------------seiIGdDi~~v~~~~~~~-~~Vi~v~t~gf~~ 127 (519)
T PRK02910 64 DLARG-TAELLKDTLRRADERFQPDLIVVGPSCT--------------AELLQEDLGGLAKHAGLP-IPVLPLELNAYRV 127 (519)
T ss_pred cccCC-hHHHHHHHHHHHHHhcCCCEEEEeCCcH--------------HHHhccCHHHHHHHhCCC-CCEEEEecCCccc
Confidence 33434 45556556654 2344456666653 233444444555555543 6799999986543
Q ss_pred C----HHHHHHHHHH-HH-----------HcCcccEEecCCC------CHHHHHHHhhcCCceeee
Q 019200 139 P----IEETIGEMKK-LV-----------EEGKIKYIGLSEA------SPGTIRRAHAVHPITAVQ 182 (344)
Q Consensus 139 ~----~~~~~~~L~~-l~-----------~~G~ir~iGvs~~------~~~~l~~~~~~~~~~~~q 182 (344)
. .+.++..|.+ +. +.+.|.-||.+.. +...++++++...+.++.
T Consensus 128 ~~~~G~~~al~~lv~~~~~~~~~~~~~~~~~~~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~vn~ 193 (519)
T PRK02910 128 KENWAADETFYQLVRALAKKAAELPQPKTARPSVNLLGPTALGFHHRDDLTELRRLLATLGIDVNV 193 (519)
T ss_pred ccchHHHHHHHHHHHHHhhhcccccccCCCCCeEEEEecCccCCCChhHHHHHHHHHHHcCCeEEE
Confidence 2 2333333222 22 2345888887542 335666666665555544
No 254
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=23.54 E-value=1.1e+03 Score=26.56 Aligned_cols=174 Identities=13% Similarity=0.082 Sum_probs=92.2
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHc-Ccc--cEEecCCCCHHHHHHHhhcCCceeee
Q 019200 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEE-GKI--KYIGLSEASPGTIRRAHAVHPITAVQ 182 (344)
Q Consensus 106 ~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~-G~i--r~iGvs~~~~~~l~~~~~~~~~~~~q 182 (344)
+.+.+.+..++. -.-|-+.||+-.= ....+-++.+..+..+.++ -.+ --|-+-++.++.++.+++..+=..+-
T Consensus 366 d~~~a~~~A~~q-ve~GA~iIDVn~~---~~~vd~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~v~eaaLk~~~G~~II 441 (1178)
T TIGR02082 366 DYDEALDIAKQQ-VENGAQILDINVD---YGMLDGVAAMKRFLNLLASEPDISTVPLMLDSSEWAVLEAGLKCIQGKCIV 441 (1178)
T ss_pred CHHHHHHHHHHH-HHCCCCEEEECCC---CCCCCHHHHHHHHHHHHHhccCCCCCeEEEeCCcHHHHHHHHHhcCCCCEE
Confidence 333444333333 3558899998752 1222334444444444443 212 23677788999999999872212344
Q ss_pred ccccccc--cchhhhHHHHHHHhCCcEEecccCCcccCCCCCCCCCCCCCcccccccCccccchhhhHHHHHHHHHHHHH
Q 019200 183 MEWSLWT--RDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSFLHFLPRFKGENLDRNKSIYFRIGNLAKK 260 (344)
Q Consensus 183 ~~~n~~~--~~~~~~l~~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~ 260 (344)
...|... ... .++++.|++.|..++++.-=..|.- ...+.....++++-+.+.+
T Consensus 442 NsIs~~~g~~~~-~~~~~l~~~yga~vV~m~~de~G~p-----------------------~t~e~r~~i~~~~~~~~~~ 497 (1178)
T TIGR02082 442 NSISLKDGEERF-IETAKLIKEYGAAVVVMAFDEEGQA-----------------------RTADRKIEICKRAYNILTE 497 (1178)
T ss_pred EeCCCCCCCccH-HHHHHHHHHhCCCEEEEecCCCCCC-----------------------CCHHHHHHHHHHHHHHHHH
Confidence 4445532 222 3799999999999999753333321 0112233445555555555
Q ss_pred -cCCCHHHHHHHHHHhCCCCeEeecCCCCHHHHHHHHhhcCCCCCHHHHHHHHhhCCCCcc
Q 019200 261 -YNCTSAQLALAWVLGQGDDVVPIPGTTKMKNLDDNIDSLRIKLTKEDLKEISDAVPIEEV 320 (344)
Q Consensus 261 -~~~s~~qlal~~~l~~~~v~~vi~G~~~~~~l~~nl~a~~~~L~~e~~~~i~~~~~~~~~ 320 (344)
+|+++.++.+ -|.+-.+ ++... +.|..++. +=+.++.|.+.++++++
T Consensus 498 ~~Gi~~edIi~-----DP~i~~v--~~g~~---e~n~~~~~---~le~i~~ik~~~pg~~~ 545 (1178)
T TIGR02082 498 KVGFPPEDIIF-----DPNILTI--ATGIE---EHRRYAIN---FIEAIRWIKEELPDAKI 545 (1178)
T ss_pred HcCCCHHHEEE-----eCCcccc--ccCch---HHHHHHHH---HHHHHHHHHHhCCCCce
Confidence 8998888543 2332221 23322 33443332 12456666666655543
No 255
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=23.41 E-value=1.9e+02 Score=29.12 Aligned_cols=60 Identities=22% Similarity=0.232 Sum_probs=42.8
Q ss_pred CchHHHHHHHHhc-CCCCCeEEEecccccCCCCcccccCCChHHHHHHHHHHHhhc-CCCceeEEEeccCCCCCCHHH
Q 019200 67 NANEVLLGKALKQ-LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRL-DVDYIDLYYQHRVDTSVPIEE 142 (344)
Q Consensus 67 g~sE~~lG~~l~~-~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~SL~rL-g~d~iDl~~lH~~~~~~~~~~ 142 (344)
|-|-+-++++|.. .+|+++.|..=. +.+ ++-+-.||+|| |+-|+.=+.+-|..+..+.++
T Consensus 632 gGsGkEF~~aLGGN~pREQFTvVmLT-------------YER---e~VLm~sLeRL~gLPYLnKvvVVWNspk~P~dd 693 (907)
T KOG2264|consen 632 GGSGKEFSKALGGNRPREQFTVVMLT-------------YER---EAVLMGSLERLHGLPYLNKVVVVWNSPKDPPDD 693 (907)
T ss_pred CCchHHHHHHhcCCCccceEEEEEEE-------------ehH---HHHHHHHHHHhhCCcccceEEEEeCCCCCChhc
Confidence 3477888888865 578888766543 222 34467899999 789999988888776655543
No 256
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=23.39 E-value=81 Score=20.20 Aligned_cols=22 Identities=23% Similarity=0.009 Sum_probs=14.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHH
Q 019200 252 FRIGNLAKKYNCTSAQLALAWV 273 (344)
Q Consensus 252 ~~l~~la~~~~~s~~qlal~~~ 273 (344)
+.++++..+.|+|..++|-.--
T Consensus 5 ~~l~~~r~~~gltq~~lA~~~g 26 (58)
T TIGR03070 5 MLVRARRKALGLTQADLADLAG 26 (58)
T ss_pred HHHHHHHHHcCCCHHHHHHHhC
Confidence 4566667777888777775543
No 257
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=23.17 E-value=3.4e+02 Score=25.01 Aligned_cols=133 Identities=16% Similarity=0.119 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEec----------ccCcCCC--chHHHHHHHHhcCC-CCCeEEEecccccCCCCcccccCC
Q 019200 39 SEEDGISMIKHAFSKGITFFDT----------ADVYGQN--ANEVLLGKALKQLP-REKIQVATKFGIAGIGVAGVIVKG 105 (344)
Q Consensus 39 ~~~~~~~~l~~Al~~Gin~~Dt----------A~~Yg~g--~sE~~lG~~l~~~~-R~~~~I~tK~~~~~~~~~~~~~~~ 105 (344)
+.+...+..+.+.+.|+..||- ...||.+ ..-..+.+.++... .-++-|+.|+-... +.
T Consensus 64 ~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~--------~~ 135 (309)
T PF01207_consen 64 DPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGW--------DD 135 (309)
T ss_dssp -HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESEC--------T-
T ss_pred cHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEeccccc--------cc
Confidence 6777788878777889999994 2234432 23445555554411 12356677764432 22
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEeccCCCCCCH--HHHHHHHHHHHHcCcccEEecCC-CCHHHHHHHhhcCCceeee
Q 019200 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPI--EETIGEMKKLVEEGKIKYIGLSE-ASPGTIRRAHAVHPITAVQ 182 (344)
Q Consensus 106 ~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~~~--~~~~~~L~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q 182 (344)
+.+...+ +=+.|+..| +|.+.+|.-...... ..-|+.+.++++.=.|--||=.+ ++.+.+.+..+....+-++
T Consensus 136 ~~~~~~~-~~~~l~~~G---~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvM 211 (309)
T PF01207_consen 136 SPEETIE-FARILEDAG---VSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVM 211 (309)
T ss_dssp -CHHHHH-HHHHHHHTT-----EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEE
T ss_pred chhHHHH-HHHHhhhcc---cceEEEecCchhhcCCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEE
Confidence 3444444 334677777 799999986544322 45688888888876666665544 4667777776654555555
Q ss_pred c
Q 019200 183 M 183 (344)
Q Consensus 183 ~ 183 (344)
+
T Consensus 212 i 212 (309)
T PF01207_consen 212 I 212 (309)
T ss_dssp E
T ss_pred E
Confidence 5
No 258
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.15 E-value=6.4e+02 Score=23.77 Aligned_cols=108 Identities=13% Similarity=0.203 Sum_probs=66.8
Q ss_pred HHHHHHHHHhhcC-CCceeEEEeccCCCC-----------CCHHHHHHHHHH-HHHcCc---ccEEecC--CCCHHHHHH
Q 019200 110 VRSCCEASLKRLD-VDYIDLYYQHRVDTS-----------VPIEETIGEMKK-LVEEGK---IKYIGLS--EASPGTIRR 171 (344)
Q Consensus 110 i~~~v~~SL~rLg-~d~iDl~~lH~~~~~-----------~~~~~~~~~L~~-l~~~G~---ir~iGvs--~~~~~~l~~ 171 (344)
+++-.+.-+++|+ .+...++.||.+++. .+++++++++.+ +.+.|+ |+++=+. |.+.+.+++
T Consensus 196 i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~~ 275 (345)
T PRK14457 196 IPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAITGRRVSFEYILLGGVNDLPEHAEE 275 (345)
T ss_pred HHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHHHHH
Confidence 4444444445554 344578999999653 236777777755 456664 5666665 445566555
Q ss_pred Hhh---cCCceeeeccccccccc----hh----hhHHHHHHHhCCcEEecccCCccc
Q 019200 172 AHA---VHPITAVQMEWSLWTRD----IE----EEIIPLCRELGIGIVPYSPLGRGF 217 (344)
Q Consensus 172 ~~~---~~~~~~~q~~~n~~~~~----~~----~~l~~~~~~~gi~v~a~~pl~~G~ 217 (344)
+.+ ..+..++-++||++... +. ....+..+++|+.+......+..+
T Consensus 276 La~~l~~l~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~~Gi~vtvR~~~G~di 332 (345)
T PRK14457 276 LANLLRGFQSHVNLIPYNPIDEVEFQRPSPKRIQAFQRVLEQRGVAVSVRASRGLDA 332 (345)
T ss_pred HHHHHhcCCCeEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCCch
Confidence 443 34557888999987431 11 345666777899998877766443
No 259
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=23.13 E-value=4.2e+02 Score=21.64 Aligned_cols=151 Identities=12% Similarity=0.106 Sum_probs=70.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEecccCcC-CCc-----hHHHHHHHHhcCC-CCCeEEEecccccCCCCcccccCCChHHHH
Q 019200 39 SEEDGISMIKHAFSKGITFFDTADVYG-QNA-----NEVLLGKALKQLP-REKIQVATKFGIAGIGVAGVIVKGAPDYVR 111 (344)
Q Consensus 39 ~~~~~~~~l~~Al~~Gin~~DtA~~Yg-~g~-----sE~~lG~~l~~~~-R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~ 111 (344)
.+|...+.++.|++.|.+.|++--..- +|. .-..+-++|+..+ .-.+.|=.|... ..+.+.
T Consensus 11 ~pent~~a~~~a~~~g~~~iE~Dv~~tkDg~~vv~Hdi~tL~e~l~~~~~~~~i~leiK~~~------------~~~~~~ 78 (189)
T cd08556 11 APENTLAAFRKALEAGADGVELDVQLTKDGVLVVIHDIPTLEEVLELVKGGVGLNIELKEPT------------RYPGLE 78 (189)
T ss_pred CCchHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEEcCCCCHHHHHHhcccCcEEEEEECCCC------------CchhHH
Confidence 347789999999999999888542221 110 0112233333222 222444444311 023345
Q ss_pred HHHHHHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhcCCceeeeccccccccc
Q 019200 112 SCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRD 191 (344)
Q Consensus 112 ~~v~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~ 191 (344)
+.+-+.+++.+. .+=+++.+.+. +.+..+.++..+=++.++--+...............++.+.+.+..+.
T Consensus 79 ~~l~~~i~~~~~--~~~v~i~s~~~-----~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-- 149 (189)
T cd08556 79 AKVAELLREYGL--EERVVVSSFDH-----EALRALKELDPEVPTGLLVDKPPLDPLLAELARALGADAVNPHYKLLT-- 149 (189)
T ss_pred HHHHHHHHHcCC--cCCEEEEeCCH-----HHHHHHHHhCCCCcEEEEeecCcccchhhhHHHhcCCeEEccChhhCC--
Confidence 555555666552 23333433322 233333332221112221111111111101122233455555554432
Q ss_pred hhhhHHHHHHHhCCcEEeccc
Q 019200 192 IEEEIIPLCRELGIGIVPYSP 212 (344)
Q Consensus 192 ~~~~l~~~~~~~gi~v~a~~p 212 (344)
..+++.|+++|+.+++|..
T Consensus 150 --~~~i~~~~~~g~~v~~wtv 168 (189)
T cd08556 150 --PELVRAAHAAGLKVYVWTV 168 (189)
T ss_pred --HHHHHHHHHcCCEEEEEcC
Confidence 4789999999999999864
No 260
>cd08590 PI-PLCc_Rv2075c_like Catalytic domain of uncharacterized Mycobacterium tuberculosis Rv2075c-like proteins. This subfamily corresponds to the catalytic domain present in uncharacterized Mycobacterium tuberculosis Rv2075c and its homologs. Members in this family are more closely related to the Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1(SaPLC1)-like proteins rather than the typical bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). In contrast, SaPLC1-like proteins have two Ca2+-chelating amino acid substitutions which convert them to metal-dependent bacterial PI-PLC. Rv2075c and its homologs have the same amino acid substitutions as well, which might suggest they have metal-dependent PI-PLC activity.
Probab=23.12 E-value=3.3e+02 Score=24.61 Aligned_cols=18 Identities=11% Similarity=0.195 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHcCcccEE
Q 019200 142 ETIGEMKKLVEEGKIKYI 159 (344)
Q Consensus 142 ~~~~~L~~l~~~G~ir~i 159 (344)
..|-.|++++++||.--+
T Consensus 150 ~~wpTL~em~~~GkrViv 167 (267)
T cd08590 150 PNWPTKEDMLNSGKQVVL 167 (267)
T ss_pred CCCCCHHHHHhCCCEEEE
Confidence 458889999999995444
No 261
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=22.97 E-value=5.5e+02 Score=22.94 Aligned_cols=99 Identities=15% Similarity=0.161 Sum_probs=0.0
Q ss_pred ccCCChHHHHHHHHHHHhhcCCCceeEEEec-cCCCCCCHHHHHHHHHHHHH-cCcccEEecCCCCHHHHHHHhhcCC--
Q 019200 102 IVKGAPDYVRSCCEASLKRLDVDYIDLYYQH-RVDTSVPIEETIGEMKKLVE-EGKIKYIGLSEASPGTIRRAHAVHP-- 177 (344)
Q Consensus 102 ~~~~~~~~i~~~v~~SL~rLg~d~iDl~~lH-~~~~~~~~~~~~~~L~~l~~-~G~ir~iGvs~~~~~~l~~~~~~~~-- 177 (344)
...++.+...+-++. |.++|+++|.+-+.- +++ -++.++.+.+ ...++..+++......++.+.+...
T Consensus 14 ~~~~~~~~k~~i~~~-L~~~Gv~~iEvg~~~~~~~-------~~~~~~~l~~~~~~~~~~~l~r~~~~~v~~a~~~~~~~ 85 (268)
T cd07940 14 GVSLTPEEKLEIARQ-LDELGVDVIEAGFPAASPG-------DFEAVKRIAREVLNAEICGLARAVKKDIDAAAEALKPA 85 (268)
T ss_pred CCCCCHHHHHHHHHH-HHHcCCCEEEEeCCCCCHH-------HHHHHHHHHHhCCCCEEEEEccCCHhhHHHHHHhCCCC
Q ss_pred -ceeeecccccccc--------------chhhhHHHHHHHhCCcEE
Q 019200 178 -ITAVQMEWSLWTR--------------DIEEEIIPLCRELGIGIV 208 (344)
Q Consensus 178 -~~~~q~~~n~~~~--------------~~~~~l~~~~~~~gi~v~ 208 (344)
++.+.+.+.+-+. ..-.+.+++++++|+.+.
T Consensus 86 ~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~ 131 (268)
T cd07940 86 KVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVE 131 (268)
T ss_pred CCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE
No 262
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=22.89 E-value=6.6e+02 Score=23.83 Aligned_cols=25 Identities=20% Similarity=0.138 Sum_probs=17.1
Q ss_pred CCCCHHHHHHHHH-------HHHHcCCCEEec
Q 019200 36 SPVSEEDGISMIK-------HAFSKGITFFDT 60 (344)
Q Consensus 36 ~~~~~~~~~~~l~-------~Al~~Gin~~Dt 60 (344)
..++.++..++++ .|.+.|+..|+-
T Consensus 132 ~~mt~~eI~~ii~~f~~AA~~a~~aGfDgVei 163 (361)
T cd04747 132 REMTEADIDDVIAAFARAAADARRLGFDGIEL 163 (361)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 3467777666665 445679999884
No 263
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=22.88 E-value=7.3e+02 Score=24.34 Aligned_cols=109 Identities=13% Similarity=0.137 Sum_probs=57.9
Q ss_pred cCcCCCchHHHHHHHHhc----CC-CCCeEEEecccccCCCCcccccCCChHHHHHHHHHHHhhcCCC----ceeEEEec
Q 019200 62 DVYGQNANEVLLGKALKQ----LP-REKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVD----YIDLYYQH 132 (344)
Q Consensus 62 ~~Yg~g~sE~~lG~~l~~----~~-R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~SL~rLg~d----~iDl~~lH 132 (344)
-.|| .|+-|-++|++ .+ .+=++|.|-+....- -+.|..-+++.-++++-+ .+.++.+|
T Consensus 66 ~VfG---G~~~L~~~I~~~~~~~~~p~~I~V~tTC~~eiI----------GDDi~~vv~~~~~~~~~e~~~~~~~vi~v~ 132 (454)
T cd01973 66 AVFG---GAKRVEEGVLVLARRYPDLRVIPIITTCSTEII----------GDDIEGVIRKLNEALKEEFPDREVHLIPVH 132 (454)
T ss_pred eEEC---cHHHHHHHHHHHHHhcCCCCEEEEECCchHhhh----------ccCHHHHHHHHHhhhhhccCCCCCeEEEee
Confidence 4677 46666677765 32 334677777754321 122444444333322111 37899999
Q ss_pred cCCCCCCH----HHHHHHHH-HHHH----cCcccEEecCC--CCHHHHHHHhhcCCceeeec
Q 019200 133 RVDTSVPI----EETIGEMK-KLVE----EGKIKYIGLSE--ASPGTIRRAHAVHPITAVQM 183 (344)
Q Consensus 133 ~~~~~~~~----~~~~~~L~-~l~~----~G~ir~iGvs~--~~~~~l~~~~~~~~~~~~q~ 183 (344)
.|...... +.+++++- .+.. +++|.-||-.+ .+.+.++++++...+.++.+
T Consensus 133 tpgF~Gs~~~G~~~a~~ali~~~~~~~~~~~~VNii~~~~~~~D~~ei~~lL~~~Gl~v~~~ 194 (454)
T cd01973 133 TPSFKGSMVTGYDEAVRSVVKTIAKKGAPSGKLNVFTGWVNPGDVVELKHYLSEMDVEANIL 194 (454)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCEEEe
Confidence 98865432 23333332 2222 46688887433 23466777777766666544
No 264
>PLN02444 HMP-P synthase
Probab=22.76 E-value=6e+02 Score=25.80 Aligned_cols=85 Identities=8% Similarity=0.071 Sum_probs=50.9
Q ss_pred cCCChHHHHHHHHHHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhcCCceeee
Q 019200 103 VKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAVQ 182 (344)
Q Consensus 103 ~~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q 182 (344)
.+.+.+.+.+.+++..+ +-+|.+-+|.- -+.+.++.++ + |..|+-+-...-+..+.-..
T Consensus 295 ~~lt~d~~~d~ieeQae----qGVDfmTIH~G-------v~~~~v~~~~--~--R~tgIVSRGGSi~a~Wml~~------ 353 (642)
T PLN02444 295 ENLTWEVFRETLIEQAE----QGVDYFTIHAG-------VLLRYIPLTA--K--RMTGIVSRGGSIHAKWCLAY------ 353 (642)
T ss_pred hhCCHHHHHHHHHHHHH----hCCCEEEEChh-------hHHHHHHHHh--C--cccCceeCCcHHHHHHHHHc------
Confidence 45677777777776655 33677777863 1334444443 3 66777665555554443321
Q ss_pred ccccccccchhhhHHHHHHHhCCcEEe
Q 019200 183 MEWSLWTRDIEEEIIPLCRELGIGIVP 209 (344)
Q Consensus 183 ~~~n~~~~~~~~~l~~~~~~~gi~v~a 209 (344)
-.-|++.... .++++.|++++|.+-.
T Consensus 354 ~kENPlYe~F-D~ileI~k~YDVtlSL 379 (642)
T PLN02444 354 HKENFAYEHW-DDILDICNQYDIALSI 379 (642)
T ss_pred CCcCchHHHH-HHHHHHHHHhCeeeec
Confidence 1235665554 4799999999998843
No 265
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=22.68 E-value=6.6e+02 Score=23.78 Aligned_cols=109 Identities=13% Similarity=0.117 Sum_probs=68.2
Q ss_pred CCCCeEEEecccccCCC------CcccccCCChHHHHHHHHHHHhhcCCC----ceeEEEeccCCCCCCHHHHHHHHHHH
Q 019200 81 PREKIQVATKFGIAGIG------VAGVIVKGAPDYVRSCCEASLKRLDVD----YIDLYYQHRVDTSVPIEETIGEMKKL 150 (344)
Q Consensus 81 ~R~~~~I~tK~~~~~~~------~~~~~~~~~~~~i~~~v~~SL~rLg~d----~iDl~~lH~~~~~~~~~~~~~~L~~l 150 (344)
.|.-+.|+|-+|..-.. ..+...+++...|..|+....++++.. ---++++--=++..-++.+..+++-+
T Consensus 99 ~r~tlCVSsQvGC~~~C~FCaTg~~G~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MGMGEPl~N~dnV~~a~~i~ 178 (349)
T COG0820 99 DRNTLCVSSQVGCPVGCTFCATGQGGLNRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMGMGEPLLNLDNVVKALEII 178 (349)
T ss_pred CCceEEEecCCCcCCCCCeeccccccceeccCHHHHHHHHHHHHHhcCccccceeeeEEEecCCchhhhHHHHHHHHHhh
Confidence 45567788888765431 124567899999999999999999863 22344444444555567888888888
Q ss_pred HH-cCc---ccEEecCCCC-HHHHHHHhhcCCceeeeccccccc
Q 019200 151 VE-EGK---IKYIGLSEAS-PGTIRRAHAVHPITAVQMEWSLWT 189 (344)
Q Consensus 151 ~~-~G~---ir~iGvs~~~-~~~l~~~~~~~~~~~~q~~~n~~~ 189 (344)
.+ .|. .|.|=||+-. ...+.++.+...-...++..|.-+
T Consensus 179 ~~~~G~~ls~R~iTvSTsGi~~~I~~l~~~~~~v~LAiSLHa~n 222 (349)
T COG0820 179 NDDEGLGLSKRRITVSTSGIVPRIRKLADEQLGVALAISLHAPN 222 (349)
T ss_pred cCcccccccceEEEEecCCCchhHHHHHhhcCCeEEEEecCCCC
Confidence 73 333 1667777765 456767664222123455444433
No 266
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=22.67 E-value=2.1e+02 Score=21.86 Aligned_cols=51 Identities=16% Similarity=0.102 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHhhcCCceeeeccccccccchhhhHHHHHHHhCCcEEeccc
Q 019200 162 SEASPGTIRRAHAVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSP 212 (344)
Q Consensus 162 s~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~p 212 (344)
+..+++.+..+....+++++-+--.--.+....++.++++++||++..+..
T Consensus 37 ~~l~~~~l~~~~~~~~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T 87 (109)
T cd00248 37 SDLDPEALLPLLAEDRPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMST 87 (109)
T ss_pred ccCCHHHHHHHHhhCCCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCc
Confidence 344555565555543345544433322222335788899999999887654
No 267
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=22.57 E-value=5.4e+02 Score=22.71 Aligned_cols=87 Identities=11% Similarity=0.045 Sum_probs=48.1
Q ss_pred HhhcCCCceeEEEeccCCCCCC-HHHHHHHHHHHHHcCcccEEecCC-CCHHHHHHHhhcCCceeeeccccccccch-hh
Q 019200 118 LKRLDVDYIDLYYQHRVDTSVP-IEETIGEMKKLVEEGKIKYIGLSE-ASPGTIRRAHAVHPITAVQMEWSLWTRDI-EE 194 (344)
Q Consensus 118 L~rLg~d~iDl~~lH~~~~~~~-~~~~~~~L~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~~~n~~~~~~-~~ 194 (344)
++.+| +|-+.+|..+.... -.--|+.+.++++.-.+.-|.-.. .+.+.+.++.+...++.+.+---+..... ..
T Consensus 162 ~~~~g---~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~~~ 238 (253)
T PRK02083 162 VEELG---AGEILLTSMDRDGTKNGYDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEITIG 238 (253)
T ss_pred HHHcC---CCEEEEcCCcCCCCCCCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCCHH
Confidence 34556 55667766443211 011266677777665566665554 36677877776544444444211211111 15
Q ss_pred hHHHHHHHhCCcE
Q 019200 195 EIIPLCRELGIGI 207 (344)
Q Consensus 195 ~l~~~~~~~gi~v 207 (344)
++.+.|++.||.+
T Consensus 239 ~~~~~~~~~~~~~ 251 (253)
T PRK02083 239 ELKAYLAEQGIPV 251 (253)
T ss_pred HHHHHHHHCCCcc
Confidence 7889999888865
No 268
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=22.43 E-value=7.1e+02 Score=24.02 Aligned_cols=96 Identities=15% Similarity=0.121 Sum_probs=62.9
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcC--cccEEecC--CCCHHHHHHHhhcCCcee
Q 019200 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG--KIKYIGLS--EASPGTIRRAHAVHPITA 180 (344)
Q Consensus 105 ~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G--~ir~iGvs--~~~~~~l~~~~~~~~~~~ 180 (344)
++++...+-+.+.++.+ +++++-.|-+..+ |+.+.+|.++- .+.-+|=- .++++.+.++++....++
T Consensus 261 ~t~~eai~~~~~l~e~~-----~i~~iEdPl~~~D----~eg~~~L~~~~g~~ipi~gdE~~~~~~~~~~~~i~~~a~d~ 331 (408)
T cd03313 261 LTSEELIDYYKELVKKY-----PIVSIEDPFDEDD----WEGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEKKAANA 331 (408)
T ss_pred cCHHHHHHHHHHHHHhC-----CcEEEEeCCCCcC----HHHHHHHHHhcCCCCeEEcCCcccCCHHHHHHHHHhCCCCE
Confidence 45565555555554443 5777777765443 55566666652 44433322 247899999999888889
Q ss_pred eeccccccccc-hhhhHHHHHHHhCCcEEe
Q 019200 181 VQMEWSLWTRD-IEEEIIPLCRELGIGIVP 209 (344)
Q Consensus 181 ~q~~~n~~~~~-~~~~l~~~~~~~gi~v~a 209 (344)
+|+..+-+-.- ...++...|+.+|+.++.
T Consensus 332 v~ik~~~iGGite~~~ia~lA~~~G~~~~~ 361 (408)
T cd03313 332 LLIKVNQIGTLTETIEAIKLAKKNGYGVVV 361 (408)
T ss_pred EEEcccccCCHHHHHHHHHHHHHcCCeEEc
Confidence 99887764321 125789999999999975
No 269
>PRK10200 putative racemase; Provisional
Probab=22.40 E-value=3.4e+02 Score=23.83 Aligned_cols=66 Identities=18% Similarity=0.047 Sum_probs=48.4
Q ss_pred cCCChHHHHHHHHHHHhhcCCCceeEEEeccCCC------------CCCHHHHHHHHHHHHHcCcccEEecCCCCHHHH
Q 019200 103 VKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDT------------SVPIEETIGEMKKLVEEGKIKYIGLSEASPGTI 169 (344)
Q Consensus 103 ~~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~------------~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l 169 (344)
+--+.+++++-++..-.+.+-++++.+.+|.++. ..+...+.+.++.|.+.| +..|.+.-.++...
T Consensus 12 p~aT~~~~~~i~~~t~a~~d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~L~~~g-~~~iviaCNTah~~ 89 (230)
T PRK10200 12 WESTIPYYRLINEGIKQRLGGLHSAQLLLHSVDFHEIEECQRRGEWDKTGDILAEAALGLQRAG-AEGIVLCTNTMHKV 89 (230)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCChHHHHHHHHCCCcchHHHHHHHHHHHHHHcC-CCEEEECCchHHHH
Confidence 3456777888888888888889999999999842 123456677888888877 68888876565543
No 270
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=22.40 E-value=1.9e+02 Score=24.13 Aligned_cols=47 Identities=23% Similarity=0.364 Sum_probs=29.1
Q ss_pred HHHHHHHHHcCCCEEecccCcCCCchHHHHHHHHhc-CCCCCeEEEeccccc
Q 019200 44 ISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ-LPREKIQVATKFGIA 94 (344)
Q Consensus 44 ~~~l~~Al~~Gin~~DtA~~Yg~g~sE~~lG~~l~~-~~R~~~~I~tK~~~~ 94 (344)
.-+-...-+.|++....... ++ ++..+-++|++ ..+.+++|+| .|..
T Consensus 22 ~~l~~~L~~~G~~v~~~~~v-~D--d~~~I~~~l~~~~~~~dlVItt-GG~G 69 (170)
T cd00885 22 AFLAKELAELGIEVYRVTVV-GD--DEDRIAEALRRASERADLVITT-GGLG 69 (170)
T ss_pred HHHHHHHHHCCCEEEEEEEe-CC--CHHHHHHHHHHHHhCCCEEEEC-CCCC
Confidence 33334444789988765433 33 56667777765 3577898888 4443
No 271
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=22.13 E-value=66 Score=28.63 Aligned_cols=23 Identities=22% Similarity=0.530 Sum_probs=21.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCC
Q 019200 33 GYSSPVSEEDGISMIKHAFSKGI 55 (344)
Q Consensus 33 ~~~~~~~~~~~~~~l~~Al~~Gi 55 (344)
.|...++++++.+++..|+++||
T Consensus 178 r~k~dlt~eea~~Lv~eAi~AGi 200 (271)
T KOG0173|consen 178 RWKPDLTKEEAIKLVCEAIAAGI 200 (271)
T ss_pred hcCcccCHHHHHHHHHHHHHhhh
Confidence 58888899999999999999998
No 272
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=21.99 E-value=1.5e+02 Score=26.98 Aligned_cols=98 Identities=17% Similarity=0.270 Sum_probs=53.8
Q ss_pred cCCChHHHHHHHHHHHhhcCCCceeEEEe-ccCCCCCCHHHHHHHHHHHHHcC-------cccEEecCCCCHHHHHHHhh
Q 019200 103 VKGAPDYVRSCCEASLKRLDVDYIDLYYQ-HRVDTSVPIEETIGEMKKLVEEG-------KIKYIGLSEASPGTIRRAHA 174 (344)
Q Consensus 103 ~~~~~~~i~~~v~~SL~rLg~d~iDl~~l-H~~~~~~~~~~~~~~L~~l~~~G-------~ir~iGvs~~~~~~l~~~~~ 174 (344)
..++.+.-.+-++..++.+|+++|.+-.. ..++ -++++.++.+.. +++.+++... ...++.+.+
T Consensus 14 ~~~s~e~K~~i~~~L~~~~Gv~~IEvg~~~~s~~-------e~~av~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~A~~ 85 (280)
T cd07945 14 VSFSPSEKLNIAKILLQELKVDRIEVASARVSEG-------EFEAVQKIIDWAAEEGLLDRIEVLGFVDG-DKSVDWIKS 85 (280)
T ss_pred CccCHHHHHHHHHHHHHHhCCCEEEecCCCCCHH-------HHHHHHHHHHHhhhhccccCcEEEEecCc-HHHHHHHHH
Confidence 34677777777777779999998887642 2221 123444443322 3556665432 345666555
Q ss_pred cCCceeeec---------cccccccchh------hhHHHHHHHhCCcEEec
Q 019200 175 VHPITAVQM---------EWSLWTRDIE------EEIIPLCRELGIGIVPY 210 (344)
Q Consensus 175 ~~~~~~~q~---------~~n~~~~~~~------~~l~~~~~~~gi~v~a~ 210 (344)
... +.+.+ ..|+- +..+ .+++++|+++|+.+..+
T Consensus 86 ~g~-~~i~i~~~~S~~h~~~~~~-~t~~e~l~~~~~~i~~a~~~G~~v~~~ 134 (280)
T cd07945 86 AGA-KVLNLLTKGSLKHCTEQLR-KTPEEHFADIREVIEYAIKNGIEVNIY 134 (280)
T ss_pred CCC-CEEEEEEeCCHHHHHHHHC-cCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 422 22222 22221 1111 45689999999876653
No 273
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=21.87 E-value=6.8e+02 Score=23.63 Aligned_cols=91 Identities=18% Similarity=0.249 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCc-ccEEecCCCCHHHHHHHhhcCCceeeeccccccc
Q 019200 111 RSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWT 189 (344)
Q Consensus 111 ~~~v~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~ 189 (344)
+..+=+.|.++|+++|.+- .-..-+.-++.++.+.+.+. .+..+++....+.++.+.+ ..++.+.+....-+
T Consensus 25 k~~ia~~L~~~Gv~~IEvG------~p~~~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~-~g~~~i~i~~~~Sd 97 (365)
T TIGR02660 25 KLAIARALDEAGVDELEVG------IPAMGEEERAVIRAIVALGLPARLMAWCRARDADIEAAAR-CGVDAVHISIPVSD 97 (365)
T ss_pred HHHHHHHHHHcCCCEEEEe------CCCCCHHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHc-CCcCEEEEEEccCH
Q ss_pred cchhh--------------hHHHHHHHhCCcEE
Q 019200 190 RDIEE--------------EIIPLCRELGIGIV 208 (344)
Q Consensus 190 ~~~~~--------------~l~~~~~~~gi~v~ 208 (344)
..... +.+++++++|+.+.
T Consensus 98 ~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~ 130 (365)
T TIGR02660 98 LQIEAKLRKDRAWVLERLARLVSFARDRGLFVS 130 (365)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEE
No 274
>PRK05406 LamB/YcsF family protein; Provisional
Probab=21.79 E-value=4.1e+02 Score=23.81 Aligned_cols=81 Identities=10% Similarity=0.220 Sum_probs=50.6
Q ss_pred ccccccCCCCCCCCCCHHHHHHHHHHHH-HcCCCEEecccCcCCCchHHHHHHHHhcCCCCCeEEEecccccCCCC-ccc
Q 019200 24 GYGCMNLSGGYSSPVSEEDGISMIKHAF-SKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGV-AGV 101 (344)
Q Consensus 24 glG~~~~~~~~~~~~~~~~~~~~l~~Al-~~Gin~~DtA~~Yg~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~-~~~ 101 (344)
+||.|.+| ++++.-.++..|- .-|+ |.|+ ...+-+.++--....|-|-..-++....+ ++.
T Consensus 13 ~fG~w~~g-------~D~~lmp~IssANIACG~-------HAGD---p~~M~~tv~lA~~~gV~IGAHPgypD~~gFGRR 75 (246)
T PRK05406 13 SFGAWKMG-------DDEALLPLVTSANIACGF-------HAGD---PAVMRRTVRLAKENGVAIGAHPGYPDLEGFGRR 75 (246)
T ss_pred CCCCCCCC-------CHHHHHHHhhhHHHhccc-------cCCC---HHHHHHHHHHHHHcCCeEccCCCCCccCCCCCC
Confidence 77888775 4466666666663 3333 6663 66666666544566777777766544322 233
Q ss_pred ccCCChHHHHHHHHHHHhhc
Q 019200 102 IVKGAPDYVRSCCEASLKRL 121 (344)
Q Consensus 102 ~~~~~~~~i~~~v~~SL~rL 121 (344)
..+.+++.++..+...+..|
T Consensus 76 ~m~~s~~el~~~v~yQigAL 95 (246)
T PRK05406 76 NMDLSPEELYALVLYQIGAL 95 (246)
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 45678888888777666665
No 275
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=21.76 E-value=5e+02 Score=21.99 Aligned_cols=121 Identities=12% Similarity=0.121 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHcCCCEEecccCcCCCchHHHHHHHHhc-------CCCCCeEEEecccccCCCCcccccCCChHHHHH
Q 019200 40 EEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ-------LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRS 112 (344)
Q Consensus 40 ~~~~~~~l~~Al~~Gin~~DtA~~Yg~g~sE~~lG~~l~~-------~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~ 112 (344)
-+++.+++..++..|-+.+ .||.|.| -.+++.+.. ..|-.+.+..=...... .....+.+.+.
T Consensus 30 i~~a~~~i~~al~~~~rI~----i~G~G~S-~~~A~~~a~~l~~~~~~~r~g~~~~~~~d~~~~--~~~~~d~~~~~--- 99 (192)
T PRK00414 30 IQRAAVLIADSFKAGGKVL----SCGNGGS-HCDAMHFAEELTGRYRENRPGYPAIAISDVSHL--SCVSNDFGYDY--- 99 (192)
T ss_pred HHHHHHHHHHHHHCCCEEE----EEeCcHH-HHHHHHHHHHhcccccCCCCCceEEecCcHHHH--hhhhccCCHHH---
Confidence 3567888888888888775 6888754 444444431 11222211110000000 00001122222
Q ss_pred HHHHHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhh
Q 019200 113 CCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHA 174 (344)
Q Consensus 113 ~v~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~ 174 (344)
-+.+.+..+. +.=|++.+-+..... .+++++++.+++.| ++-|++++.....+.+..+
T Consensus 100 ~~~~~~~~~~-~~~Dv~I~iS~SG~t--~~~i~~~~~ak~~g-~~iI~iT~~~~s~l~~~ad 157 (192)
T PRK00414 100 VFSRYVEAVG-REGDVLLGISTSGNS--GNIIKAIEAARAKG-MKVITLTGKDGGKMAGLAD 157 (192)
T ss_pred HHHHHHHHhC-CCCCEEEEEeCCCCC--HHHHHHHHHHHHCC-CeEEEEeCCCCChhHHhCC
Confidence 2223333333 445888876655433 78899999999997 8999999987777766543
No 276
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.76 E-value=4.1e+02 Score=27.71 Aligned_cols=97 Identities=13% Similarity=0.119 Sum_probs=55.2
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHc--CcccEEecCCCCHHHHHHHhhcCCceeee
Q 019200 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEE--GKIKYIGLSEASPGTIRRAHAVHPITAVQ 182 (344)
Q Consensus 105 ~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~--G~ir~iGvs~~~~~~l~~~~~~~~~~~~q 182 (344)
.+.+.|++-++.....-.....-+|+|+..+... ...+++|.+..++ +.+.+|.+++.....+..+... +.+
T Consensus 104 ~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls--~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSR----Cq~ 177 (700)
T PRK12323 104 RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT--NHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSR----CLQ 177 (700)
T ss_pred CCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC--HHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHH----HHh
Confidence 4456676666655443333456788988877554 3455666666655 8899999999655544443332 344
Q ss_pred ccccccccchh-hhHHHHHHHhCCcE
Q 019200 183 MEWSLWTRDIE-EEIIPLCRELGIGI 207 (344)
Q Consensus 183 ~~~n~~~~~~~-~~l~~~~~~~gi~v 207 (344)
+.+..+....- .-+...|.+.|+.+
T Consensus 178 f~f~~ls~eei~~~L~~Il~~Egi~~ 203 (700)
T PRK12323 178 FNLKQMPPGHIVSHLDAILGEEGIAH 203 (700)
T ss_pred cccCCCChHHHHHHHHHHHHHcCCCC
Confidence 55555443211 22333455556543
No 277
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=21.49 E-value=3.8e+02 Score=25.91 Aligned_cols=82 Identities=9% Similarity=0.038 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhh--cCCceeeeccccccccchh-hhHHHHHHHhCCcEEecccCCcc
Q 019200 140 IEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHA--VHPITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRG 216 (344)
Q Consensus 140 ~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~--~~~~~~~q~~~n~~~~~~~-~~l~~~~~~~gi~v~a~~pl~~G 216 (344)
...+...++.+.++.-|....+-..+...+.+.+. ..+...+..+-|++.+-.+ ..+.+.|+++|+.++.=++++.+
T Consensus 112 YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP 191 (396)
T COG0626 112 YGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATP 191 (396)
T ss_pred cchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcccc
Confidence 56788888888888888888777766655555443 4667778889998876544 67999999999999988888877
Q ss_pred cCCCC
Q 019200 217 FFGGK 221 (344)
Q Consensus 217 ~L~~~ 221 (344)
.+...
T Consensus 192 ~~q~P 196 (396)
T COG0626 192 VLQRP 196 (396)
T ss_pred cccCh
Confidence 76543
No 278
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=21.40 E-value=5.5e+02 Score=22.41 Aligned_cols=138 Identities=12% Similarity=0.091 Sum_probs=76.0
Q ss_pred HHHHHHHcCCCEEec-ccCcCCCchHHHHHHHHhcCCCCCeEEEecccccCCCCcccccCCChHHHHHHHHHHHhhcCCC
Q 019200 46 MIKHAFSKGITFFDT-ADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVD 124 (344)
Q Consensus 46 ~l~~Al~~Gin~~Dt-A~~Yg~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~SL~rLg~d 124 (344)
.|+...+. +|.++. +..|+.- +++.+.+|.++ -++++..+.|+........ .-....+.+.+.+-+.++-|| +
T Consensus 11 ~L~~Ya~~-F~~VEvn~TFY~~P-~~~t~~~W~~~-~p~~F~F~vK~~~~iTH~~--~l~~~~~~~~~~F~~~~~~L~-~ 84 (230)
T PF01904_consen 11 RLAYYARH-FNTVEVNSTFYRIP-SPETVARWREQ-TPEGFRFSVKAPQLITHER--RLRDCAEELWRRFLEALEPLG-E 84 (230)
T ss_dssp HHHHHCCT--SEEEE-HHCCSSS--HHHHHHHHCT-S-TT-EEEEE--CCCCCCC--HCGSSHHHHHHHHHHHCHHHH-T
T ss_pred HHHHHHHh-CCeEEECcccCCCC-CHHHHHHHHhh-CCCCeEEEEeccHHheecc--cccccHHHHHHHHHHHHHHHh-h
Confidence 34444444 666664 4566654 78889998875 5689999999975442110 011235666466666999999 9
Q ss_pred ceeEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhcCCceeeeccccccccchhhhHHHHHHHhC
Q 019200 125 YIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDIEEEIIPLCRELG 204 (344)
Q Consensus 125 ~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~g 204 (344)
++..+++.-|.....-.+.++.|..+.+.=. ......+.++---+.. .+++++++++|
T Consensus 85 klg~iL~Q~Ppsf~~~~~~~~~l~~~l~~~~-------------------~~~~~avE~R~~sW~~---~~~~~~l~~~~ 142 (230)
T PF01904_consen 85 KLGPILFQFPPSFRFTPENLERLDAFLDRLP-------------------RGFRYAVEFRHPSWFT---EEVFELLREHG 142 (230)
T ss_dssp -EEEEEEE--TT--S-HHHHHHHHHHHHHTT--------------------TS-EEEE--BGGGGC---HHHHHHHHHTT
T ss_pred cceEEEEEcCCCcCCCHHHHHHHHHHHhhcc-------------------cccceEEecCCcchhh---HHHHHHHHHcC
Confidence 9999999998764444566666666655322 1112334443332222 57899999999
Q ss_pred CcEEecc
Q 019200 205 IGIVPYS 211 (344)
Q Consensus 205 i~v~a~~ 211 (344)
+..+.-.
T Consensus 143 ~~~v~~d 149 (230)
T PF01904_consen 143 VALVIAD 149 (230)
T ss_dssp -EEEEEE
T ss_pred CEEEEeC
Confidence 9887543
No 279
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.14 E-value=3.3e+02 Score=25.75 Aligned_cols=83 Identities=10% Similarity=0.085 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHcC----cccEE---ecCC--CCHHHHHHHhhcCCceeeeccccccccchh--------hhHHHHHH
Q 019200 139 PIEETIGEMKKLVEEG----KIKYI---GLSE--ASPGTIRRAHAVHPITAVQMEWSLWTRDIE--------EEIIPLCR 201 (344)
Q Consensus 139 ~~~~~~~~L~~l~~~G----~ir~i---Gvs~--~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~--------~~l~~~~~ 201 (344)
++++++++++.+.+.+ +|+++ |+.. .....+.+++...+..++-++||++....- ....+.++
T Consensus 244 ~l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~l~~~VnLIPynp~~~~ky~~ps~e~l~~f~~~L~ 323 (356)
T PRK14455 244 PLEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKGIKCHVNLIPVNPVPERDYVRTPKEDIFAFEDTLK 323 (356)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCcEEEEecCcCCCCCCcCCCHHHHHHHHHHHH
Q ss_pred HhCCcEEecccCCcccCCCC
Q 019200 202 ELGIGIVPYSPLGRGFFGGK 221 (344)
Q Consensus 202 ~~gi~v~a~~pl~~G~L~~~ 221 (344)
++|+.+......+..+....
T Consensus 324 ~~gi~v~ir~~~g~di~aaC 343 (356)
T PRK14455 324 KNGVNCTIRREHGTDIDAAC 343 (356)
T ss_pred HCCCcEEEeCCCCcchhhcC
No 280
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.09 E-value=7.1e+02 Score=23.51 Aligned_cols=136 Identities=14% Similarity=0.092 Sum_probs=81.2
Q ss_pred CCCCeEEEecccccCCC------CcccccCCChHHHHHHHHHHHhhcCCCc-eeEEEeccCCCCCCHHHHHHHHHHHHH-
Q 019200 81 PREKIQVATKFGIAGIG------VAGVIVKGAPDYVRSCCEASLKRLDVDY-IDLYYQHRVDTSVPIEETIGEMKKLVE- 152 (344)
Q Consensus 81 ~R~~~~I~tK~~~~~~~------~~~~~~~~~~~~i~~~v~~SL~rLg~d~-iDl~~lH~~~~~~~~~~~~~~L~~l~~- 152 (344)
.|..+.|+|-+|....- ..+...+.+.+.|..++......++.+. --+.+.-.=++....+.+.++++.+++
T Consensus 97 ~~~t~cvSsq~GC~l~C~FC~t~~~G~~rnlt~~EIv~Qv~~~~~~~~~~~v~~VvfmGmGEPL~N~d~v~~~l~~l~~~ 176 (348)
T PRK14467 97 DHLTLCVSSQVGCAVGCKFCATAKDGLIRNLRTAEIIDQYIQVQKFLGENRIRNVVFMGMGEPLANYENVRKAVQIMTSP 176 (348)
T ss_pred CCcEEEEEcCCCCCCcCcCCCCCCCCCcCCCCHHHHHHHHHHHHHHhccCCCCeEEEEccChhhcCHHHHHHHHHHHcCh
Confidence 36678888888764331 1122368999999999987766654222 334555555666677899999999986
Q ss_pred cCc---ccEEecCCCCH-HHHHHHhhc---CCceeeeccccccccch------------hhhHHHHHH----HhCCcEEe
Q 019200 153 EGK---IKYIGLSEASP-GTIRRAHAV---HPITAVQMEWSLWTRDI------------EEEIIPLCR----ELGIGIVP 209 (344)
Q Consensus 153 ~G~---ir~iGvs~~~~-~~l~~~~~~---~~~~~~q~~~n~~~~~~------------~~~l~~~~~----~~gi~v~a 209 (344)
.|. -|++-||+... ..+.++... ..++. .+..+..+... -..+++.++ +.|..+..
T Consensus 177 ~gl~~~~r~itvsT~G~~~~i~~l~~~~~l~~v~L-alSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~~~~~~g~~V~i 255 (348)
T PRK14467 177 WGLDLSKRRITISTSGIIHQIKRMAEDPVMPEVNL-AVSLNASSQKLRERIMPISKTNTLEELMEVLKQYPLPPGRRIML 255 (348)
T ss_pred hccCcCCCcEEEECCCChhHHHHHHhhccccCeeE-EEECCCCCHHHHHHhcCCccccCHHHHHHHHHHHHHhcCCeEEE
Confidence 565 35777766542 334444332 23332 24444433211 134555554 66777777
Q ss_pred cccCCccc
Q 019200 210 YSPLGRGF 217 (344)
Q Consensus 210 ~~pl~~G~ 217 (344)
.-|+-.|.
T Consensus 256 eyvLIpGv 263 (348)
T PRK14467 256 EYVLIKGV 263 (348)
T ss_pred EEEEECCc
Confidence 77776554
No 281
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=21.03 E-value=4.3e+02 Score=22.64 Aligned_cols=23 Identities=13% Similarity=0.335 Sum_probs=18.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEecc
Q 019200 39 SEEDGISMIKHAFSKGITFFDTA 61 (344)
Q Consensus 39 ~~~~~~~~l~~Al~~Gin~~DtA 61 (344)
-.|...+.++.|++.|...|++-
T Consensus 11 ~pENT~~af~~A~~~gad~iE~D 33 (229)
T cd08562 11 APENTLAAFRAAAELGVRWVEFD 33 (229)
T ss_pred CCchHHHHHHHHHHcCCCEEEEE
Confidence 34778899999999999988753
No 282
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=21.01 E-value=4.5e+02 Score=23.79 Aligned_cols=99 Identities=15% Similarity=0.103 Sum_probs=56.8
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEEeccCC--C-CCCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhcCCceee
Q 019200 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVD--T-SVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAV 181 (344)
Q Consensus 105 ~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~--~-~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~ 181 (344)
++.+.-. .+-+.|.++|+++|++-.+-.|. + ..+.+++...+.. ...++..+++ .....++.+++.. ++.+
T Consensus 17 ~s~e~K~-~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~---~~~~~~~~~~-~~~~dv~~A~~~g-~~~i 90 (274)
T cd07938 17 IPTEDKI-ELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPR---RPGVRYSALV-PNLRGAERALAAG-VDEV 90 (274)
T ss_pred cCHHHHH-HHHHHHHHcCCCEEEeCCCCCcccccccCCHHHHHhhccc---CCCCEEEEEC-CCHHHHHHHHHcC-cCEE
Confidence 5555444 44556999999999997543332 1 1233444444443 2346777775 4667788887754 2333
Q ss_pred eccccccc--------cch------hhhHHHHHHHhCCcEEe
Q 019200 182 QMEWSLWT--------RDI------EEEIIPLCRELGIGIVP 209 (344)
Q Consensus 182 q~~~n~~~--------~~~------~~~l~~~~~~~gi~v~a 209 (344)
.+....-+ ... ..+.+++++++|+.+..
T Consensus 91 ~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~ 132 (274)
T cd07938 91 AVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRG 132 (274)
T ss_pred EEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 33222211 111 14578899999998863
No 283
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=20.93 E-value=3.4e+02 Score=26.60 Aligned_cols=88 Identities=16% Similarity=0.163 Sum_probs=54.5
Q ss_pred HHhhcCCCceeEEEeccCCC-CCCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhc-------CC-ceeeeccccc
Q 019200 117 SLKRLDVDYIDLYYQHRVDT-SVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV-------HP-ITAVQMEWSL 187 (344)
Q Consensus 117 SL~rLg~d~iDl~~lH~~~~-~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~-------~~-~~~~q~~~n~ 187 (344)
.++.||+.|. ++..|-. -.. +.+....+-+.|-...+|....+++++++.+.. .+ |-++.+ .+.
T Consensus 11 f~~~lgiryP---iiqgpMa~GiS---s~eLVaAVs~AGgLG~lgag~l~~e~l~~~I~~ir~~~~~~p~fGVNL~-~~~ 83 (444)
T TIGR02814 11 FREDYGVRYA---YVAGAMANGIA---SAELVIAMGRAGILGFFGAGGLPLEEVEQAIHRIQQALPGGPAYGVNLI-HSP 83 (444)
T ss_pred HHHHhCCCCc---EECccccCCCC---CHHHHHHHHhCCceeeeCCCCCCHHHHHHHHHHHHHhcCCCCceEEEec-ccC
Confidence 3466776653 2233322 111 234555667889999999999999988776554 13 554443 222
Q ss_pred cccchhhhHHHHHHHhCCcEEecc
Q 019200 188 WTRDIEEEIIPLCRELGIGIVPYS 211 (344)
Q Consensus 188 ~~~~~~~~l~~~~~~~gi~v~a~~ 211 (344)
-+...+..+++.|-+++|.++..+
T Consensus 84 ~~~~~e~~~v~l~l~~~V~~veas 107 (444)
T TIGR02814 84 SDPALEWGLVDLLLRHGVRIVEAS 107 (444)
T ss_pred CCcccHHHHHHHHHHcCCCEEEec
Confidence 222234578999999999988654
No 284
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=20.90 E-value=3.3e+02 Score=26.21 Aligned_cols=68 Identities=18% Similarity=0.099 Sum_probs=49.7
Q ss_pred HHHHHHHHHHcCcc--c-EEecCCCCHHHHHHHhhcCCceeeecccccccc-chhhhHHHHHHHhCCcEEec
Q 019200 143 TIGEMKKLVEEGKI--K-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTR-DIEEEIIPLCRELGIGIVPY 210 (344)
Q Consensus 143 ~~~~L~~l~~~G~i--r-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~~~gi~v~a~ 210 (344)
-++.+.+|+++-.+ . ..|=+.++.+.++.+++...++++|....-+-- ..-..+..+|+.+|+.++.+
T Consensus 247 d~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~~a~Divq~d~~~~GGit~~~kia~lA~a~gi~~~pH 318 (394)
T PRK15440 247 DYWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEMGCIDIIQPDVGWCGGLTELVKIAALAKARGQLVVPH 318 (394)
T ss_pred cHHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHcCCCCEEeCCccccCCHHHHHHHHHHHHHcCCeeccc
Confidence 36677788876542 2 236677788999999998889999998766432 11267999999999998664
No 285
>PRK10551 phage resistance protein; Provisional
Probab=20.85 E-value=4.8e+02 Score=26.08 Aligned_cols=98 Identities=12% Similarity=0.163 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhhcCCCceeEEEeccCCCC-CCHHHHHHHHHHHHHcCcccEEecCCCCH--HHHHHHhhcCCceeeeccc
Q 019200 109 YVRSCCEASLKRLDVDYIDLYYQHRVDTS-VPIEETIGEMKKLVEEGKIKYIGLSEASP--GTIRRAHAVHPITAVQMEW 185 (344)
Q Consensus 109 ~i~~~v~~SL~rLg~d~iDl~~lH~~~~~-~~~~~~~~~L~~l~~~G~ir~iGvs~~~~--~~l~~~~~~~~~~~~q~~~ 185 (344)
.+...+.+.++.++....- +.+--.+.. ....+..+.++.|++.|. .|.+.+|.. ..+..+.. .+++.+-+.-
T Consensus 365 ~f~~~l~~~l~~~~~~~~~-LvlEItE~~~~~~~~~~~~l~~Lr~~G~--~ialDDFGtg~ssl~~L~~-l~vD~lKID~ 440 (518)
T PRK10551 365 SFKADVQRLLASLPADHFQ-IVLEITERDMVQEEEATKLFAWLHSQGI--EIAIDDFGTGHSALIYLER-FTLDYLKIDR 440 (518)
T ss_pred hHHHHHHHHHHhCCCCcce-EEEEEechHhcCCHHHHHHHHHHHHCCC--EEEEECCCCCchhHHHHHh-CCCCEEEECH
Confidence 3445566666666654322 222211111 112345678899999998 677766642 22333322 3455555443
Q ss_pred cccc--------cchhhhHHHHHHHhCCcEEec
Q 019200 186 SLWT--------RDIEEEIIPLCRELGIGIVPY 210 (344)
Q Consensus 186 n~~~--------~~~~~~l~~~~~~~gi~v~a~ 210 (344)
+... +..-..+++.|++.|+.++|=
T Consensus 441 ~fv~~i~~~~~~~~il~~ii~la~~lgi~vVAE 473 (518)
T PRK10551 441 GFIQAIGTETVTSPVLDAVLTLAKRLNMLTVAE 473 (518)
T ss_pred HHHhhhccChHHHHHHHHHHHHHHHCCCEEEEE
Confidence 3222 112257999999999999984
No 286
>PRK07094 biotin synthase; Provisional
Probab=20.82 E-value=6.6e+02 Score=23.03 Aligned_cols=142 Identities=13% Similarity=0.151 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEecccCcCCCchHHHHHHHHhcCCC-CCeEEEecccccCCCCcccccCCChHHHHHHHHH
Q 019200 38 VSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPR-EKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEA 116 (344)
Q Consensus 38 ~~~~~~~~~l~~Al~~Gin~~DtA~~Yg~g~sE~~lG~~l~~~~R-~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~ 116 (344)
.+.++..+.++.+.+.|++.|--......-.....+-+.++.... .++.+..-.+ ..+.+.++.--+.
T Consensus 70 ls~eei~~~~~~~~~~g~~~i~l~gG~~~~~~~~~l~~l~~~i~~~~~l~i~~~~g-----------~~~~e~l~~Lk~a 138 (323)
T PRK07094 70 LSPEEILECAKKAYELGYRTIVLQSGEDPYYTDEKIADIIKEIKKELDVAITLSLG-----------ERSYEEYKAWKEA 138 (323)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHccCCceEEEecC-----------CCCHHHHHHHHHc
Q ss_pred HHhhc--CCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCcccE----EecCCCCHHHHHHHhhc-CCceeeeccccccc
Q 019200 117 SLKRL--DVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKY----IGLSEASPGTIRRAHAV-HPITAVQMEWSLWT 189 (344)
Q Consensus 117 SL~rL--g~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~----iGvs~~~~~~l~~~~~~-~~~~~~q~~~n~~~ 189 (344)
-+.++ |.+..|==.+.........++.+++++.+++.|.--. +|+...+.+.+.+.+.. .......+.++++.
T Consensus 139 G~~~v~~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~~l~~l~~~~v~~~~~~ 218 (323)
T PRK07094 139 GADRYLLRHETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDILFLKELDLDMIGIGPFI 218 (323)
T ss_pred CCCEEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHHHHHhCCCCeeeeeccc
Q ss_pred c
Q 019200 190 R 190 (344)
Q Consensus 190 ~ 190 (344)
+
T Consensus 219 P 219 (323)
T PRK07094 219 P 219 (323)
T ss_pred c
No 287
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=20.81 E-value=6.8e+02 Score=23.19 Aligned_cols=135 Identities=11% Similarity=0.063 Sum_probs=78.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEecc---c-------CcCCC--chHHHHHHHHhcC-CCCCeEEEecccccCCCCcccccCC
Q 019200 39 SEEDGISMIKHAFSKGITFFDTA---D-------VYGQN--ANEVLLGKALKQL-PREKIQVATKFGIAGIGVAGVIVKG 105 (344)
Q Consensus 39 ~~~~~~~~l~~Al~~Gin~~DtA---~-------~Yg~g--~sE~~lG~~l~~~-~R~~~~I~tK~~~~~~~~~~~~~~~ 105 (344)
+.++..+..+.+.+.|+..||.- + .+|.. ..-..+.+.++.. .--++-|+.|+..... .
T Consensus 75 ~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~--------~ 146 (321)
T PRK10415 75 DPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWA--------P 146 (321)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEcccc--------C
Confidence 66777777777788999999942 1 12210 1233344444331 1114457777743221 1
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEeccCCCCCC--HHHHHHHHHHHHHcCcccEEecCCC-CHHHHHHHhhcCCceeee
Q 019200 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVP--IEETIGEMKKLVEEGKIKYIGLSEA-SPGTIRRAHAVHPITAVQ 182 (344)
Q Consensus 106 ~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~~--~~~~~~~L~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q 182 (344)
+..... .+-+.++..| +|.+.+|.-..... -..-|+.+.++++.=.|--||..+. +++.++++.+....+.+|
T Consensus 147 ~~~~~~-~~a~~le~~G---~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVm 222 (321)
T PRK10415 147 EHRNCV-EIAQLAEDCG---IQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALM 222 (321)
T ss_pred CcchHH-HHHHHHHHhC---CCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEE
Confidence 111122 2223466777 46667786542211 1134778888888777888888765 788888888776778888
Q ss_pred ccc
Q 019200 183 MEW 185 (344)
Q Consensus 183 ~~~ 185 (344)
+-=
T Consensus 223 iGR 225 (321)
T PRK10415 223 IGR 225 (321)
T ss_pred ECh
Confidence 753
No 288
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=20.69 E-value=5.4e+02 Score=22.03 Aligned_cols=133 Identities=13% Similarity=0.060 Sum_probs=71.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEecc----------cCcCCC--chHHHHHHHHhcCC-CCCeEEEecccccCCCCcccccCC
Q 019200 39 SEEDGISMIKHAFSKGITFFDTA----------DVYGQN--ANEVLLGKALKQLP-REKIQVATKFGIAGIGVAGVIVKG 105 (344)
Q Consensus 39 ~~~~~~~~l~~Al~~Gin~~DtA----------~~Yg~g--~sE~~lG~~l~~~~-R~~~~I~tK~~~~~~~~~~~~~~~ 105 (344)
+.++..+..+.+.+.|+..||-- +.||.. ..-+.+-+.++..+ .-.+-|+.|+.... +.
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~--------~~ 136 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGW--------DD 136 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeecc--------CC
Confidence 66788888888889999999852 345532 12344444444321 11144666664221 01
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEeccCCCCC--CHHHHHHHHHHHHHcCcccEEecCCC-CHHHHHHHhhcCCceeee
Q 019200 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDTSV--PIEETIGEMKKLVEEGKIKYIGLSEA-SPGTIRRAHAVHPITAVQ 182 (344)
Q Consensus 106 ~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~--~~~~~~~~L~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q 182 (344)
. +...+-++ .|+..|+ |.+.+|...... .....|+.+..+++.-.+--++..+. +.+.+.++++....+.++
T Consensus 137 ~-~~~~~~~~-~l~~~Gv---d~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~ 211 (231)
T cd02801 137 E-EETLELAK-ALEDAGA---SALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVM 211 (231)
T ss_pred c-hHHHHHHH-HHHHhCC---CEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEE
Confidence 1 23333333 4556674 555667653211 11123566667777666666665554 566777776665556666
Q ss_pred cc
Q 019200 183 ME 184 (344)
Q Consensus 183 ~~ 184 (344)
+-
T Consensus 212 ig 213 (231)
T cd02801 212 IG 213 (231)
T ss_pred Ec
Confidence 54
No 289
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=20.57 E-value=4.8e+02 Score=23.04 Aligned_cols=106 Identities=22% Similarity=0.205 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEecccCcCCCchHHHHHHHHhc---------CCCCCeEEEecccccCCCCc------cccc
Q 019200 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ---------LPREKIQVATKFGIAGIGVA------GVIV 103 (344)
Q Consensus 39 ~~~~~~~~l~~Al~~Gin~~DtA~~Yg~g~sE~~lG~~l~~---------~~R~~~~I~tK~~~~~~~~~------~~~~ 103 (344)
+.+....++++|-..|-+|+|-|.. -+++..+..- ...+.++-+.|.|..--.-+ ..+.
T Consensus 25 d~~~V~~i~~AA~~ggAt~vDIAad------p~LV~~~~~~s~lPICVSaVep~~f~~aV~AGAdliEIGNfDsFY~qGr 98 (242)
T PF04481_consen 25 DAESVAAIVKAAEIGGATFVDIAAD------PELVKLAKSLSNLPICVSAVEPELFVAAVKAGADLIEIGNFDSFYAQGR 98 (242)
T ss_pred CHHHHHHHHHHHHccCCceEEecCC------HHHHHHHHHhCCCCeEeecCCHHHHHHHHHhCCCEEEecchHHHHhcCC
Confidence 7788999999999999999999853 3444443321 01222222222221100000 1124
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcC
Q 019200 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG 154 (344)
Q Consensus 104 ~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G 154 (344)
.++.+.+..-.++..+.|- |+.+---..-..++++..+--++|++.|
T Consensus 99 ~f~a~eVL~Lt~~tR~LLP----~~~LsVTVPHiL~ld~Qv~LA~~L~~~G 145 (242)
T PF04481_consen 99 RFSAEEVLALTRETRSLLP----DITLSVTVPHILPLDQQVQLAEDLVKAG 145 (242)
T ss_pred eecHHHHHHHHHHHHHhCC----CCceEEecCccccHHHHHHHHHHHHHhC
Confidence 5677777777777777773 2211111122234566666666666655
No 290
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=20.57 E-value=4e+02 Score=23.13 Aligned_cols=60 Identities=22% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCccc---EEecCCC-CHHHHHHHhhcCCceeeeccccccccchhhhHHHHHHHhCCcEE
Q 019200 142 ETIGEMKKLVEEGKIK---YIGLSEA-SPGTIRRAHAVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIV 208 (344)
Q Consensus 142 ~~~~~L~~l~~~G~ir---~iGvs~~-~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~ 208 (344)
...+.+++++++-.-+ .||..+. +.++++.+++.+. .++..+.-- .+++++|+++||.++
T Consensus 50 ~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA-~FivsP~~~------~~v~~~~~~~~i~~i 113 (213)
T PRK06552 50 FASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGA-QFIVSPSFN------RETAKICNLYQIPYL 113 (213)
T ss_pred cHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCC-CEEECCCCC------HHHHHHHHHcCCCEE
No 291
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=20.57 E-value=6.5e+02 Score=22.89 Aligned_cols=70 Identities=19% Similarity=0.130 Sum_probs=50.1
Q ss_pred CCChHHHHHHHHHHHhhcCC--------------------------CceeEEEeccCCCC-CC--HHHHHHHHHHHHHcC
Q 019200 104 KGAPDYVRSCCEASLKRLDV--------------------------DYIDLYYQHRVDTS-VP--IEETIGEMKKLVEEG 154 (344)
Q Consensus 104 ~~~~~~i~~~v~~SL~rLg~--------------------------d~iDl~~lH~~~~~-~~--~~~~~~~L~~l~~~G 154 (344)
......+.+.++.-|+||++ ...+++.|.-|..- ++ .+-+=++..+++++|
T Consensus 101 Gm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~G 180 (300)
T COG4152 101 GMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEG 180 (300)
T ss_pred CCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcC
Confidence 35677888888888888875 12344444444322 22 234457788999999
Q ss_pred cccEEecCCCCHHHHHHHhhc
Q 019200 155 KIKYIGLSEASPGTIRRAHAV 175 (344)
Q Consensus 155 ~ir~iGvs~~~~~~l~~~~~~ 175 (344)
. .|=+|+|..++.+++++.
T Consensus 181 a--tIifSsH~Me~vEeLCD~ 199 (300)
T COG4152 181 A--TIIFSSHRMEHVEELCDR 199 (300)
T ss_pred C--EEEEecchHHHHHHHhhh
Confidence 9 899999999999999885
No 292
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=20.44 E-value=6.1e+02 Score=22.48 Aligned_cols=85 Identities=12% Similarity=0.067 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEecccCcCCCc-hHHHHHHHHhcCCCCCeEE-EecccccCCCCcccccCCChHHHHHHHHH
Q 019200 39 SEEDGISMIKHAFSKGITFFDTADVYGQNA-NEVLLGKALKQLPREKIQV-ATKFGIAGIGVAGVIVKGAPDYVRSCCEA 116 (344)
Q Consensus 39 ~~~~~~~~l~~Al~~Gin~~DtA~~Yg~g~-sE~~lG~~l~~~~R~~~~I-~tK~~~~~~~~~~~~~~~~~~~i~~~v~~ 116 (344)
+.+++.+.+..+...+.+.++.--.|=... +..-.-..+.+...++.+| +-+- ... +.....+.+.-.+-+.+
T Consensus 12 ~~~~~~e~~~~~~~~~~Di~E~RvD~l~~~~~~~~~~~~~~e~~~~~~~IfT~R~-~~E----GG~~~~~~~~~i~ll~~ 86 (231)
T COG0710 12 DIAELKEQAEKSKELDADIVELRVDLLESNVEVLEVAKALREKDPDKPLIFTFRT-VKE----GGEFPGSEEEYIELLKK 86 (231)
T ss_pred CHHHHHHHHHHhhccCCCEEEEeechhcccchHHHHHHHHHHhccCCceEEEEee-hhh----cCCCCCCHHHHHHHHHH
Confidence 668888889999999988888654443311 1222222333334444444 4342 111 11234567777777888
Q ss_pred HHhhcCCCceeE
Q 019200 117 SLKRLDVDYIDL 128 (344)
Q Consensus 117 SL~rLg~d~iDl 128 (344)
..+.-+.+|+|+
T Consensus 87 la~~~~~d~iDi 98 (231)
T COG0710 87 LAELNGPDYIDI 98 (231)
T ss_pred HHhhcCCCEEEE
Confidence 888777899997
No 293
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=20.43 E-value=7e+02 Score=25.26 Aligned_cols=85 Identities=9% Similarity=0.063 Sum_probs=50.8
Q ss_pred cCCChHHHHHHHHHHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhcCCceeee
Q 019200 103 VKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAVQ 182 (344)
Q Consensus 103 ~~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q 182 (344)
.+++.+.+.+.+++..+. =+|.+-+|.- -+.+.++.++ + |..|+-+-...-+.+++-...
T Consensus 290 ~~lt~e~~~d~ieeQAeq----GVDf~TIHaG-------v~~~~v~~~~--~--R~tgIVSRGGSima~Wml~h~----- 349 (607)
T PRK09284 290 EDLTWEIFRDTLIEQAEQ----GVDYFTIHAG-------VLLRYVPLTA--K--RVTGIVSRGGSIMAKWCLAHH----- 349 (607)
T ss_pred hhCCHHHHHHHHHHHHHh----CCCEEEEChh-------hHHHHHHHHh--C--cccCcccCCHHHHHHHHHHcC-----
Confidence 356777777776666552 3667777763 1233444443 2 677776666555555433221
Q ss_pred ccccccccchhhhHHHHHHHhCCcEEe
Q 019200 183 MEWSLWTRDIEEEIIPLCRELGIGIVP 209 (344)
Q Consensus 183 ~~~n~~~~~~~~~l~~~~~~~gi~v~a 209 (344)
.-|++...+ .++++.|++++|.+-.
T Consensus 350 -kENplYe~F-D~ileI~k~YDVtlSL 374 (607)
T PRK09284 350 -KENFLYTHF-EEICEIMAAYDVSFSL 374 (607)
T ss_pred -CcCcHHHHH-HHHHHHHHHhCeeeec
Confidence 235555554 4799999999998844
No 294
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=20.36 E-value=2e+02 Score=28.16 Aligned_cols=59 Identities=17% Similarity=0.253 Sum_probs=40.4
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecCCCCHHHHH
Q 019200 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIR 170 (344)
Q Consensus 104 ~~~~~~i~~~v~~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~ 170 (344)
..+.+...+.+.++|+.||+++ |-+ .......+..-+.+++|+++|++ |...|+ .++++
T Consensus 47 ~Rs~~~~~~~I~e~L~wLGI~~-De~----y~QSer~~~y~~~~e~L~e~G~A-Y~C~Ct--~eel~ 105 (445)
T PRK12558 47 ERSKQEYADAIAEDLKWLGINW-DRT----FRQSDRFDRYDEAAEKLKAAGRL-YPCYET--PEELE 105 (445)
T ss_pred ccchHHHHHHHHHHHHHcCCCC-Ccc----ccHHHHHHHHHHHHHHHHHCCCE-EEecCc--hHHHH
Confidence 4566889999999999999984 742 22222334557889999999985 555554 44443
No 295
>PRK01492 rnpA ribonuclease P; Reviewed
Probab=20.27 E-value=4.2e+02 Score=20.60 Aligned_cols=61 Identities=11% Similarity=0.097 Sum_probs=41.4
Q ss_pred CCCeEEEecccccCCCCcccccCCChHHHHHHHHHHHhhcCCC------ceeEEEeccCCC-CCCHHHHHHHHHHHH
Q 019200 82 REKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVD------YIDLYYQHRVDT-SVPIEETIGEMKKLV 151 (344)
Q Consensus 82 R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~v~~SL~rLg~d------~iDl~~lH~~~~-~~~~~~~~~~L~~l~ 151 (344)
|=-+.|+-|++.. ...++.+++.+.++.+.+..+ -.|++++-.+.. +.+..++.+.|+.|.
T Consensus 47 RlG~sVSKKv~~k---------AV~RNRiKR~lRE~fR~~~~~~~l~~~g~DiVviaR~~~~~~~~~~l~~~l~~l~ 114 (118)
T PRK01492 47 FLGIKVSRKLNKK---------AVVRNKIKRRIRHLIRIIVSDSSFKAIKFAMIIIPRKGFEEINFSHLNYELSKII 114 (118)
T ss_pred eEEEEEecccCCc---------hhhHHHHHHHHHHHHHHhCcccccCCCCceEEEEECCCcccCCHHHHHHHHHHHH
Confidence 4456777775421 256788888888888887542 479999998874 345666666666654
No 296
>PF13467 RHH_4: Ribbon-helix-helix domain; PDB: 3KK4_C.
Probab=20.19 E-value=1.2e+02 Score=21.18 Aligned_cols=29 Identities=7% Similarity=0.032 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHhC
Q 019200 248 KSIYFRIGNLAKKYNCTSAQLALAWVLGQ 276 (344)
Q Consensus 248 ~~~~~~l~~la~~~~~s~~qlal~~~l~~ 276 (344)
..-++.|++||...|+|.++++-..-..+
T Consensus 20 ~~FW~~L~eiA~~~g~s~~~li~~id~~r 48 (67)
T PF13467_consen 20 PAFWDALEEIAAREGLSLNALIAEIDARR 48 (67)
T ss_dssp HHHHHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 34578999999999999999887775444
No 297
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=20.01 E-value=2.1e+02 Score=23.92 Aligned_cols=64 Identities=20% Similarity=0.212 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhcCCCc----eeEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhc
Q 019200 110 VRSCCEASLKRLDVDY----IDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV 175 (344)
Q Consensus 110 i~~~v~~SL~rLg~d~----iDl~~lH~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 175 (344)
.+..++..++++|.+. ++.+.-.+ .......++.+.|+.|+++| ++-.-+||.+...+...++.
T Consensus 61 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~L~~~g-~~~~i~Sn~~~~~~~~~l~~ 128 (198)
T TIGR01428 61 TREALRYLLGRLGLEDDESAADRLAEAY-LRLPPHPDVPAGLRALKERG-YRLAILSNGSPAMLKSLVKH 128 (198)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHH-hcCCCCCCHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHHH
Confidence 3556677777777642 11111111 11223457788899999988 45556777777766665554
No 298
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=20.01 E-value=4.3e+02 Score=26.66 Aligned_cols=73 Identities=23% Similarity=0.175 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhcCCceee---eccccccccchhhhHHHHHHHhCCcEEecccC
Q 019200 138 VPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAV---QMEWSLWTRDIEEEIIPLCRELGIGIVPYSPL 213 (344)
Q Consensus 138 ~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~---q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~pl 213 (344)
...+++.+.+.+.++..+|+.||+-.+..-.+...++...+.++ |..+++-.. -.-++..-..|.-+..-.|+
T Consensus 410 id~~~I~ew~~~~~~~~~i~~v~~D~~g~~~~~~~l~~~g~~lv~i~Q~~~~l~~~---~k~~e~~~~~g~i~~~dnp~ 485 (546)
T COG4626 410 IDYAEIVEWFMEIREKFLIKLVGFDPSGAGEFRDALAEAGIKVVGIPQGFKKLSGA---IKTIERKLAEGVLVHGDNPL 485 (546)
T ss_pred cCHHHHHHHHHHHHHhCCccEEeecccchHHHHHHHHhCCCceeeccchhhhhCch---hHHHHHHHhcCcEEECCCcH
Confidence 34678899999999999999999999999888888777655544 333333222 23455555566666666665
Done!