Query 019203
Match_columns 344
No_of_seqs 138 out of 1486
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 07:33:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019203.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019203hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 1.7E-68 3.6E-73 494.7 32.6 306 8-317 1-310 (316)
2 KOG1575 Voltage-gated shaker-l 100.0 4.1E-67 8.8E-72 476.2 31.9 321 2-327 6-336 (336)
3 PRK10625 tas putative aldo-ket 100.0 1.7E-61 3.7E-66 456.2 33.1 307 8-318 1-341 (346)
4 TIGR01293 Kv_beta voltage-depe 100.0 1.9E-61 4.2E-66 450.6 31.9 298 10-314 1-316 (317)
5 PRK09912 L-glyceraldehyde 3-ph 100.0 5.1E-61 1.1E-65 452.4 33.0 308 5-317 10-334 (346)
6 COG0656 ARA1 Aldo/keto reducta 100.0 5.7E-60 1.2E-64 422.0 26.7 259 8-320 3-268 (280)
7 PLN02587 L-galactose dehydroge 100.0 6.3E-59 1.4E-63 433.3 30.7 286 10-316 1-300 (314)
8 cd06660 Aldo_ket_red Aldo-keto 100.0 2.4E-57 5.2E-62 417.5 31.3 280 10-314 1-285 (285)
9 PRK10376 putative oxidoreducta 100.0 1.2E-56 2.7E-61 413.1 30.6 273 11-317 10-289 (290)
10 PF00248 Aldo_ket_red: Aldo/ke 100.0 9.8E-57 2.1E-61 413.0 26.0 276 22-315 1-282 (283)
11 PRK11172 dkgB 2,5-diketo-D-glu 100.0 2.5E-54 5.5E-59 393.2 27.9 246 18-317 1-253 (267)
12 KOG1577 Aldo/keto reductase fa 100.0 1.1E-54 2.4E-59 387.9 24.8 260 10-320 6-289 (300)
13 PRK14863 bifunctional regulato 100.0 3.3E-54 7.2E-59 396.4 23.9 270 17-315 2-281 (292)
14 COG4989 Predicted oxidoreducta 100.0 1.1E-53 2.4E-58 365.7 23.2 285 8-317 1-294 (298)
15 PRK11565 dkgA 2,5-diketo-D-glu 100.0 1.3E-51 2.8E-56 376.7 28.5 256 9-319 5-265 (275)
16 KOG1576 Predicted oxidoreducta 100.0 7E-52 1.5E-56 357.1 22.5 291 7-314 21-319 (342)
17 COG1453 Predicted oxidoreducta 100.0 2.8E-50 6.1E-55 363.1 24.0 271 8-315 1-284 (391)
18 KOG3023 Glutamate-cysteine lig 97.7 6.8E-05 1.5E-09 65.2 6.4 73 140-213 155-229 (285)
19 cd03319 L-Ala-DL-Glu_epimerase 93.8 2.7 6E-05 39.0 14.8 155 39-217 134-292 (316)
20 PRK08392 hypothetical protein; 91.6 8.4 0.00018 33.7 14.0 150 43-209 16-179 (215)
21 cd03174 DRE_TIM_metallolyase D 91.6 3.1 6.8E-05 37.3 11.6 106 104-211 15-135 (265)
22 cd03315 MLE_like Muconate lact 85.7 27 0.00058 31.5 14.8 156 39-217 85-244 (265)
23 PRK10550 tRNA-dihydrouridine s 84.9 24 0.00052 32.9 12.8 134 39-185 73-225 (312)
24 TIGR02370 pyl_corrinoid methyl 84.4 20 0.00043 30.9 11.4 145 39-205 10-164 (197)
25 PRK13958 N-(5'-phosphoribosyl) 84.1 3.7 8.1E-05 35.8 6.7 68 117-186 16-84 (207)
26 PRK07535 methyltetrahydrofolat 82.9 34 0.00073 31.0 12.6 137 105-269 22-158 (261)
27 cd03316 MR_like Mandelate race 81.9 46 0.001 31.3 14.7 153 39-212 139-299 (357)
28 COG1748 LYS9 Saccharopine dehy 81.9 7.3 0.00016 37.4 8.2 83 39-137 77-159 (389)
29 cd04740 DHOD_1B_like Dihydroor 80.5 46 0.001 30.4 13.9 152 39-206 100-287 (296)
30 COG0135 TrpF Phosphoribosylant 79.5 14 0.00029 32.3 8.4 84 117-209 17-103 (208)
31 PRK01222 N-(5'-phosphoribosyl) 79.0 6.5 0.00014 34.3 6.4 69 117-187 18-87 (210)
32 cd02930 DCR_FMN 2,4-dienoyl-Co 77.5 57 0.0012 30.9 12.8 97 82-183 202-305 (353)
33 cd00739 DHPS DHPS subgroup of 77.4 55 0.0012 29.5 12.6 101 105-211 21-127 (257)
34 PRK09613 thiH thiamine biosynt 77.0 57 0.0012 32.3 12.9 171 38-210 28-238 (469)
35 cd02070 corrinoid_protein_B12- 76.9 48 0.001 28.6 12.5 145 39-205 9-162 (201)
36 PRK07945 hypothetical protein; 76.4 69 0.0015 30.1 14.2 107 41-161 111-227 (335)
37 PRK10558 alpha-dehydro-beta-de 75.4 38 0.00082 30.6 10.5 68 146-214 9-79 (256)
38 cd00423 Pterin_binding Pterin 74.5 65 0.0014 29.0 13.1 102 105-212 21-128 (258)
39 COG4130 Predicted sugar epimer 74.2 19 0.00041 31.5 7.6 81 164-263 49-136 (272)
40 PF07021 MetW: Methionine bios 72.7 16 0.00034 31.5 6.8 150 45-217 5-172 (193)
41 TIGR00735 hisF imidazoleglycer 71.8 64 0.0014 28.9 11.1 90 115-207 161-253 (254)
42 TIGR01278 DPOR_BchB light-inde 71.3 1.2E+02 0.0025 30.5 14.4 100 69-182 69-193 (511)
43 PF00682 HMGL-like: HMGL-like 70.8 36 0.00079 29.9 9.2 163 38-215 11-194 (237)
44 PRK04452 acetyl-CoA decarbonyl 70.0 97 0.0021 29.0 12.5 96 116-214 83-185 (319)
45 PRK08609 hypothetical protein; 69.5 1.4E+02 0.0029 30.5 14.8 150 43-208 351-522 (570)
46 PLN02389 biotin synthase 69.1 1.1E+02 0.0023 29.4 12.5 101 38-155 116-227 (379)
47 cd07943 DRE_TIM_HOA 4-hydroxy- 69.0 54 0.0012 29.5 10.1 105 104-210 18-131 (263)
48 TIGR03822 AblA_like_2 lysine-2 68.1 1.1E+02 0.0023 28.7 13.5 109 106-217 120-240 (321)
49 COG0159 TrpA Tryptophan syntha 66.7 87 0.0019 28.4 10.6 33 281-313 209-242 (265)
50 COG1801 Uncharacterized conser 66.6 62 0.0013 29.4 9.8 109 22-138 4-116 (263)
51 cd00308 enolase_like Enolase-s 66.3 56 0.0012 28.6 9.4 88 126-217 120-209 (229)
52 PRK10128 2-keto-3-deoxy-L-rham 66.2 1E+02 0.0023 28.0 11.4 103 147-301 9-114 (267)
53 cd02069 methionine_synthase_B1 65.3 94 0.002 27.1 11.8 145 39-205 13-168 (213)
54 COG1140 NarY Nitrate reductase 65.2 3.4 7.4E-05 38.9 1.4 55 152-206 262-317 (513)
55 cd01973 Nitrogenase_VFe_beta_l 65.1 1.5E+02 0.0032 29.3 14.3 113 61-183 65-194 (454)
56 TIGR03239 GarL 2-dehydro-3-deo 64.8 82 0.0018 28.3 10.2 66 148-214 4-72 (249)
57 PF05690 ThiG: Thiazole biosyn 63.5 47 0.001 29.6 8.0 116 21-157 9-126 (247)
58 COG3172 NadR Predicted ATPase/ 63.1 47 0.001 27.9 7.5 104 46-154 70-185 (187)
59 PF05913 DUF871: Bacterial pro 63.1 31 0.00067 32.8 7.4 211 39-298 12-235 (357)
60 PRK00208 thiG thiazole synthas 62.9 1.2E+02 0.0025 27.3 17.3 107 102-210 70-181 (250)
61 PRK05692 hydroxymethylglutaryl 62.8 25 0.00055 32.3 6.7 103 104-209 22-138 (287)
62 cd04734 OYE_like_3_FMN Old yel 62.1 1.4E+02 0.0031 28.1 13.4 94 82-183 206-314 (343)
63 PLN02363 phosphoribosylanthran 61.9 30 0.00066 31.2 6.9 69 118-187 63-132 (256)
64 PRK13796 GTPase YqeH; Provisio 61.7 1.5E+02 0.0032 28.2 12.6 121 38-170 54-177 (365)
65 PF00682 HMGL-like: HMGL-like 61.4 60 0.0013 28.5 8.7 97 105-207 11-124 (237)
66 PRK09856 fructoselysine 3-epim 61.0 54 0.0012 29.4 8.5 118 110-263 15-143 (275)
67 PRK12581 oxaloacetate decarbox 59.7 1.9E+02 0.0041 28.7 12.8 150 39-205 103-263 (468)
68 cd00405 PRAI Phosphoribosylant 59.6 70 0.0015 27.4 8.6 47 116-169 67-113 (203)
69 PF13378 MR_MLE_C: Enolase C-t 59.4 18 0.0004 27.6 4.5 55 162-217 3-58 (111)
70 cd06543 GH18_PF-ChiA-like PF-C 59.0 1.5E+02 0.0032 27.3 11.6 180 22-216 71-265 (294)
71 cd01974 Nitrogenase_MoFe_beta 59.0 1.8E+02 0.004 28.3 12.7 110 60-182 63-192 (435)
72 cd00740 MeTr MeTr subgroup of 58.3 1.4E+02 0.003 26.8 13.4 105 104-212 22-127 (252)
73 PRK13803 bifunctional phosphor 58.2 59 0.0013 33.4 9.0 70 118-187 19-89 (610)
74 PRK00164 moaA molybdenum cofac 58.1 1.6E+02 0.0034 27.4 13.7 149 38-209 49-228 (331)
75 cd07944 DRE_TIM_HOA_like 4-hyd 58.0 1.5E+02 0.0032 26.9 13.0 105 103-210 15-128 (266)
76 PRK09427 bifunctional indole-3 57.7 33 0.00072 33.8 6.8 66 118-187 273-339 (454)
77 PF03102 NeuB: NeuB family; I 57.5 84 0.0018 28.1 8.8 112 38-168 53-184 (241)
78 cd03322 rpsA The starvation se 57.4 60 0.0013 30.8 8.5 71 143-213 202-274 (361)
79 cd04731 HisF The cyclase subun 56.5 1.3E+02 0.0027 26.6 10.0 85 116-203 156-243 (243)
80 PRK06424 transcription factor; 56.2 31 0.00067 28.2 5.4 110 194-304 23-141 (144)
81 cd07943 DRE_TIM_HOA 4-hydroxy- 55.1 1.6E+02 0.0034 26.5 16.6 157 38-215 19-198 (263)
82 TIGR02026 BchE magnesium-proto 54.9 1.1E+02 0.0023 30.6 10.1 151 39-205 223-392 (497)
83 COG0635 HemN Coproporphyrinoge 54.6 1.1E+02 0.0024 29.8 9.8 60 105-166 201-276 (416)
84 TIGR02311 HpaI 2,4-dihydroxyhe 54.6 1.6E+02 0.0035 26.3 10.9 102 147-301 3-108 (249)
85 PRK07259 dihydroorotate dehydr 54.2 1.8E+02 0.0038 26.7 12.2 154 39-206 102-290 (301)
86 PRK12928 lipoyl synthase; Prov 53.7 1.4E+02 0.0031 27.4 10.0 77 138-215 185-282 (290)
87 PLN02746 hydroxymethylglutaryl 53.2 1E+02 0.0022 29.2 9.1 99 104-208 64-179 (347)
88 TIGR01928 menC_lowGC/arch o-su 52.7 56 0.0012 30.4 7.3 76 142-217 210-287 (324)
89 smart00642 Aamy Alpha-amylase 52.7 29 0.00063 29.0 4.9 21 194-214 73-93 (166)
90 TIGR01502 B_methylAsp_ase meth 52.3 2.3E+02 0.005 27.5 11.7 86 127-213 265-357 (408)
91 PRK14461 ribosomal RNA large s 52.1 99 0.0022 29.6 8.7 91 127-217 230-354 (371)
92 COG4464 CapC Capsular polysacc 51.7 1.5E+02 0.0032 26.2 8.8 34 34-68 14-47 (254)
93 PF14871 GHL6: Hypothetical gl 51.6 31 0.00068 27.7 4.7 25 190-214 43-67 (132)
94 cd03323 D-glucarate_dehydratas 51.4 2.3E+02 0.005 27.3 15.0 149 39-214 168-322 (395)
95 cd03318 MLE Muconate Lactonizi 50.6 98 0.0021 29.3 8.7 74 143-216 227-302 (365)
96 COG2949 SanA Uncharacterized m 50.6 1.3E+02 0.0028 26.3 8.4 99 109-213 77-182 (235)
97 COG0218 Predicted GTPase [Gene 49.9 1.7E+02 0.0037 25.3 9.2 101 40-153 90-198 (200)
98 PRK02083 imidazole glycerol ph 49.7 1.7E+02 0.0037 26.0 9.8 88 117-207 161-251 (253)
99 PRK00730 rnpA ribonuclease P; 49.7 91 0.002 25.3 7.0 62 81-152 46-109 (138)
100 TIGR00973 leuA_bact 2-isopropy 49.5 2.8E+02 0.0061 27.7 13.9 24 38-61 20-43 (494)
101 KOG0023 Alcohol dehydrogenase, 48.7 83 0.0018 29.5 7.3 148 7-206 173-323 (360)
102 COG1151 6Fe-6S prismane cluste 48.5 85 0.0018 31.6 7.9 126 108-266 360-492 (576)
103 TIGR00676 fadh2 5,10-methylene 48.4 2.1E+02 0.0046 25.9 15.5 155 41-218 15-193 (272)
104 TIGR02026 BchE magnesium-proto 48.3 2.9E+02 0.0063 27.5 12.9 103 104-210 221-342 (497)
105 PF11242 DUF2774: Protein of u 47.8 26 0.00056 24.0 3.0 22 253-274 15-36 (63)
106 cd03321 mandelate_racemase Man 47.5 2.5E+02 0.0054 26.5 13.8 152 39-210 141-294 (355)
107 COG2102 Predicted ATPases of P 47.5 56 0.0012 28.8 5.8 121 115-266 52-177 (223)
108 PRK07379 coproporphyrinogen II 47.5 1.1E+02 0.0025 29.4 8.7 60 105-166 179-255 (400)
109 PRK08195 4-hyroxy-2-oxovalerat 46.9 2.2E+02 0.0049 26.7 10.4 105 102-210 19-134 (337)
110 TIGR02534 mucon_cyclo muconate 46.9 1.1E+02 0.0023 29.1 8.4 74 144-217 227-302 (368)
111 TIGR03217 4OH_2_O_val_ald 4-hy 46.7 2.5E+02 0.0055 26.3 10.7 104 102-210 18-133 (333)
112 TIGR00381 cdhD CO dehydrogenas 46.7 2.7E+02 0.0059 26.7 11.8 106 108-218 128-254 (389)
113 PF04476 DUF556: Protein of un 46.5 2.1E+02 0.0046 25.4 10.3 149 48-207 14-183 (235)
114 PRK06294 coproporphyrinogen II 46.5 1.3E+02 0.0027 28.7 8.8 61 104-166 166-243 (370)
115 COG1121 ZnuC ABC-type Mn/Zn tr 46.4 1.1E+02 0.0023 27.7 7.6 67 105-174 112-207 (254)
116 TIGR03821 AblA_like_1 lysine-2 46.3 2.5E+02 0.0054 26.2 13.1 109 106-217 126-246 (321)
117 COG5310 Homospermidine synthas 46.1 2.6E+02 0.0057 26.4 11.1 170 19-208 15-210 (481)
118 CHL00076 chlB photochlorophyll 46.0 3.2E+02 0.007 27.4 14.4 133 69-214 69-248 (513)
119 TIGR02660 nifV_homocitr homoci 45.6 2.7E+02 0.0059 26.4 12.3 149 103-299 18-180 (365)
120 PRK02910 light-independent pro 45.2 3.3E+02 0.0072 27.3 14.2 105 63-183 64-194 (519)
121 PRK05660 HemN family oxidoredu 45.0 1.4E+02 0.0031 28.5 8.9 107 20-164 118-241 (378)
122 COG2874 FlaH Predicted ATPases 44.6 75 0.0016 28.0 6.1 114 41-163 43-167 (235)
123 cd03314 MAL Methylaspartate am 44.6 2.9E+02 0.0063 26.4 11.4 84 129-212 230-320 (369)
124 cd02810 DHOD_DHPD_FMN Dihydroo 44.5 2.4E+02 0.0053 25.5 11.5 131 39-184 109-272 (289)
125 cd07948 DRE_TIM_HCS Saccharomy 44.4 1.7E+02 0.0037 26.4 8.9 99 104-210 18-131 (262)
126 PRK11858 aksA trans-homoaconit 44.0 3E+02 0.0064 26.4 12.9 24 38-61 23-46 (378)
127 PRK15072 bifunctional D-altron 43.7 2.1E+02 0.0047 27.5 10.0 71 143-213 245-317 (404)
128 PLN02428 lipoic acid synthase 43.1 3E+02 0.0065 26.1 11.2 158 38-215 130-325 (349)
129 PRK14457 ribosomal RNA large s 42.9 3E+02 0.0065 26.1 15.7 164 38-215 129-330 (345)
130 PRK14459 ribosomal RNA large s 42.4 1.8E+02 0.004 27.8 9.0 96 122-217 235-361 (373)
131 COG0135 TrpF Phosphoribosylant 42.3 73 0.0016 27.8 5.8 96 39-164 11-110 (208)
132 PF00697 PRAI: N-(5'phosphorib 42.0 34 0.00074 29.4 3.8 67 117-187 14-81 (197)
133 cd04747 OYE_like_5_FMN Old yel 41.8 3.2E+02 0.0068 26.1 13.4 142 37-183 133-327 (361)
134 cd02803 OYE_like_FMN_family Ol 41.6 2.9E+02 0.0062 25.5 13.6 93 83-183 207-310 (327)
135 cd01965 Nitrogenase_MoFe_beta_ 41.4 3.4E+02 0.0074 26.3 13.7 109 62-183 61-188 (428)
136 PRK08255 salicylyl-CoA 5-hydro 41.3 4.6E+02 0.0099 27.8 12.8 158 37-206 540-737 (765)
137 cd07937 DRE_TIM_PC_TC_5S Pyruv 41.2 2.8E+02 0.006 25.2 16.1 166 38-214 18-204 (275)
138 cd04735 OYE_like_4_FMN Old yel 40.9 3.2E+02 0.0069 25.8 12.4 93 83-183 214-312 (353)
139 PF03102 NeuB: NeuB family; I 40.5 1.4E+02 0.003 26.7 7.5 31 269-299 105-135 (241)
140 COG2355 Zn-dependent dipeptida 40.3 1.9E+02 0.0041 27.0 8.5 107 41-163 149-260 (313)
141 PRK05339 PEP synthetase regula 40.2 66 0.0014 29.3 5.4 100 165-288 44-153 (269)
142 PRK09058 coproporphyrinogen II 39.9 1.8E+02 0.0039 28.5 8.9 30 104-134 226-255 (449)
143 PRK10415 tRNA-dihydrouridine s 39.9 3.2E+02 0.0068 25.5 11.2 136 39-186 75-226 (321)
144 cd03327 MR_like_2 Mandelate ra 39.2 2E+02 0.0043 27.0 8.8 69 143-211 210-280 (341)
145 PRK14017 galactonate dehydrata 38.9 2.5E+02 0.0054 26.8 9.6 70 144-213 217-288 (382)
146 PRK14462 ribosomal RNA large s 38.8 3.5E+02 0.0076 25.7 13.3 88 130-217 225-340 (356)
147 TIGR00677 fadh2_euk methylenet 38.3 3.1E+02 0.0068 25.0 13.2 158 40-218 15-197 (281)
148 TIGR01862 N2-ase-Ialpha nitrog 38.2 3.9E+02 0.0085 26.1 13.9 104 62-181 97-221 (443)
149 cd00408 DHDPS-like Dihydrodipi 37.9 3E+02 0.0066 24.7 17.0 133 38-189 15-162 (281)
150 COG2185 Sbm Methylmalonyl-CoA 37.7 1.8E+02 0.0039 23.8 7.0 57 158-218 19-77 (143)
151 cd02932 OYE_YqiM_FMN Old yello 37.7 3.4E+02 0.0075 25.3 12.9 94 82-183 219-319 (336)
152 COG0502 BioB Biotin synthase a 37.4 3.5E+02 0.0075 25.5 9.8 133 38-190 84-233 (335)
153 PF10668 Phage_terminase: Phag 36.8 71 0.0015 21.9 3.9 17 253-269 24-40 (60)
154 PF00809 Pterin_bind: Pterin b 36.8 1.1E+02 0.0025 26.5 6.3 90 118-213 28-125 (210)
155 PRK13523 NADPH dehydrogenase N 36.7 3.7E+02 0.0079 25.3 11.6 137 38-183 132-304 (337)
156 PRK13347 coproporphyrinogen II 36.6 1.9E+02 0.0041 28.4 8.5 60 105-166 216-291 (453)
157 KOG0059 Lipid exporter ABCA1 a 36.6 1.8E+02 0.0038 31.5 8.8 73 103-177 668-769 (885)
158 COG0710 AroD 3-dehydroquinate 36.1 3.1E+02 0.0068 24.3 14.7 86 39-130 12-100 (231)
159 TIGR00190 thiC thiamine biosyn 35.5 3.2E+02 0.0069 26.5 9.2 144 39-209 75-221 (423)
160 PF11020 DUF2610: Domain of un 35.5 89 0.0019 22.7 4.3 30 245-275 48-77 (82)
161 cd02931 ER_like_FMN Enoate red 35.4 4.1E+02 0.0088 25.5 13.4 39 145-183 295-334 (382)
162 TIGR01927 menC_gamma/gm+ o-suc 35.4 3.1E+02 0.0067 25.3 9.3 73 145-217 196-270 (307)
163 cd07944 DRE_TIM_HOA_like 4-hyd 35.4 3.4E+02 0.0073 24.5 16.5 115 38-173 17-144 (266)
164 PRK05628 coproporphyrinogen II 35.0 2.9E+02 0.0063 26.2 9.3 29 104-133 171-199 (375)
165 PF07287 DUF1446: Protein of u 34.5 1.3E+02 0.0029 28.6 6.7 107 142-297 10-120 (362)
166 cd02933 OYE_like_FMN Old yello 34.5 4E+02 0.0086 25.0 13.2 68 114-183 246-313 (338)
167 PRK05588 histidinol-phosphatas 34.3 3.3E+02 0.0072 24.1 13.6 79 41-135 16-103 (255)
168 COG1168 MalY Bifunctional PLP- 34.1 4.3E+02 0.0093 25.4 11.6 145 39-214 39-201 (388)
169 cd03317 NAAAR N-acylamino acid 34.0 1.9E+02 0.004 27.2 7.8 73 144-216 217-291 (354)
170 PRK08195 4-hyroxy-2-oxovalerat 33.7 4.1E+02 0.0089 25.0 17.3 24 38-61 22-45 (337)
171 PRK08446 coproporphyrinogen II 33.5 4.1E+02 0.0089 25.0 10.7 60 105-166 162-231 (350)
172 TIGR00238 KamA family protein. 33.5 4.1E+02 0.0088 24.9 13.2 107 107-217 144-263 (331)
173 PF01904 DUF72: Protein of unk 33.4 3.3E+02 0.0072 23.9 10.7 137 46-210 11-148 (230)
174 cd04728 ThiG Thiazole synthase 33.4 3.6E+02 0.0078 24.2 17.5 106 102-209 70-180 (248)
175 COG0145 HyuA N-methylhydantoin 33.4 3.7E+02 0.008 28.1 10.1 103 38-142 136-249 (674)
176 TIGR03471 HpnJ hopanoid biosyn 33.3 2.8E+02 0.006 27.3 9.1 155 39-205 228-392 (472)
177 PRK02901 O-succinylbenzoate sy 33.2 3.9E+02 0.0085 25.0 9.6 72 144-217 173-245 (327)
178 COG1751 Uncharacterized conser 33.0 2.3E+02 0.005 23.5 6.8 88 129-217 2-96 (186)
179 PRK05414 urocanate hydratase; 33.0 1.4E+02 0.0031 29.7 6.6 117 45-175 116-254 (556)
180 PLN02540 methylenetetrahydrofo 33.0 5.5E+02 0.012 26.2 13.5 149 41-206 15-197 (565)
181 TIGR01228 hutU urocanate hydra 32.8 1.4E+02 0.0031 29.6 6.6 117 45-175 107-245 (545)
182 TIGR00048 radical SAM enzyme, 32.7 2.2E+02 0.0048 27.0 8.0 90 128-217 218-335 (355)
183 PF02679 ComA: (2R)-phospho-3- 32.7 76 0.0016 28.4 4.5 98 111-209 24-131 (244)
184 TIGR02090 LEU1_arch isopropylm 32.6 4.4E+02 0.0095 25.0 13.0 25 38-62 19-43 (363)
185 PRK03892 ribonuclease P protei 32.2 3.5E+02 0.0075 23.7 11.8 169 82-302 27-197 (216)
186 COG2089 SpsE Sialic acid synth 32.1 4.4E+02 0.0095 24.8 11.1 118 38-174 87-224 (347)
187 PRK13352 thiamine biosynthesis 31.4 2E+02 0.0044 27.8 7.3 120 142-296 122-246 (431)
188 PRK12331 oxaloacetate decarbox 31.1 5.3E+02 0.011 25.4 11.7 116 86-209 4-141 (448)
189 PRK14454 ribosomal RNA large s 30.7 4.7E+02 0.01 24.7 10.8 72 102-175 126-204 (342)
190 PRK09856 fructoselysine 3-epim 30.6 2.8E+02 0.0062 24.6 8.2 51 165-215 14-71 (275)
191 TIGR00216 ispH_lytB (E)-4-hydr 30.5 3.4E+02 0.0073 24.9 8.4 43 252-295 224-272 (280)
192 PRK01045 ispH 4-hydroxy-3-meth 30.4 4E+02 0.0087 24.7 9.0 43 252-295 226-274 (298)
193 cd07939 DRE_TIM_NifV Streptomy 30.2 4E+02 0.0086 23.8 14.0 97 104-208 16-127 (259)
194 PRK06361 hypothetical protein; 30.1 3.5E+02 0.0076 23.1 18.9 186 42-273 11-201 (212)
195 smart00052 EAL Putative diguan 30.1 3.5E+02 0.0076 23.1 8.7 98 109-210 100-209 (241)
196 TIGR03217 4OH_2_O_val_ald 4-hy 30.1 4.7E+02 0.01 24.6 17.4 49 38-86 21-80 (333)
197 PF00356 LacI: Bacterial regul 29.8 71 0.0015 20.5 2.9 42 254-301 2-43 (46)
198 PF04068 RLI: Possible Fer4-li 29.7 26 0.00056 21.1 0.7 13 332-344 4-16 (35)
199 PRK10605 N-ethylmaleimide redu 29.7 4.9E+02 0.011 24.7 13.9 147 37-190 148-328 (362)
200 PRK13352 thiamine biosynthesis 29.5 4.8E+02 0.01 25.4 9.4 144 39-209 75-224 (431)
201 PF03618 Kinase-PPPase: Kinase 29.5 1.1E+02 0.0025 27.5 5.1 100 165-288 38-147 (255)
202 PRK13210 putative L-xylulose 5 29.3 3.7E+02 0.008 24.0 8.7 51 194-263 97-147 (284)
203 cd01320 ADA Adenosine deaminas 29.3 3.6E+02 0.0077 24.8 8.8 105 105-210 66-192 (325)
204 PRK09249 coproporphyrinogen II 29.2 4E+02 0.0087 26.1 9.4 16 205-220 317-332 (453)
205 cd01966 Nitrogenase_NifN_1 Nit 29.2 5.4E+02 0.012 24.9 12.6 108 62-182 61-189 (417)
206 COG2159 Predicted metal-depend 29.1 2.9E+02 0.0062 25.4 7.9 97 118-214 55-167 (293)
207 TIGR01430 aden_deam adenosine 28.8 4.6E+02 0.01 24.1 12.9 104 106-214 138-242 (324)
208 cd07948 DRE_TIM_HCS Saccharomy 28.8 4.4E+02 0.0094 23.8 15.6 116 38-173 19-147 (262)
209 PRK09061 D-glutamate deacylase 28.8 3.8E+02 0.0082 26.8 9.2 107 43-157 171-278 (509)
210 cd02801 DUS_like_FMN Dihydrour 28.7 3.8E+02 0.0083 23.1 10.5 134 39-185 65-214 (231)
211 COG3623 SgaU Putative L-xylulo 28.4 88 0.0019 27.9 4.0 76 15-91 65-155 (287)
212 PRK11858 aksA trans-homoaconit 28.3 5.3E+02 0.012 24.6 14.3 100 103-210 21-135 (378)
213 PF14502 HTH_41: Helix-turn-he 28.2 79 0.0017 20.6 2.8 30 251-280 6-37 (48)
214 COG4555 NatA ABC-type Na+ tran 28.2 2.8E+02 0.0061 24.5 7.0 71 103-175 103-202 (245)
215 TIGR00789 flhB_rel flhB C-term 28.1 86 0.0019 22.9 3.4 25 194-218 30-54 (82)
216 PTZ00413 lipoate synthase; Pro 28.0 5.6E+02 0.012 24.8 11.9 159 38-215 177-373 (398)
217 PLN02321 2-isopropylmalate syn 28.0 6.3E+02 0.014 26.2 10.7 109 103-216 103-235 (632)
218 TIGR01182 eda Entner-Doudoroff 27.8 2.5E+02 0.0054 24.4 6.8 88 106-209 18-106 (204)
219 cd03320 OSBS o-Succinylbenzoat 27.8 3.2E+02 0.007 24.4 7.9 73 143-216 166-239 (263)
220 cd07939 DRE_TIM_NifV Streptomy 27.8 4.4E+02 0.0095 23.5 13.6 40 38-78 17-57 (259)
221 PRK01222 N-(5'-phosphoribosyl) 27.6 3.9E+02 0.0085 23.1 8.1 48 105-163 64-111 (210)
222 TIGR01163 rpe ribulose-phospha 27.4 3.8E+02 0.0083 22.6 10.0 100 105-208 8-108 (210)
223 PF01402 RHH_1: Ribbon-helix-h 27.3 99 0.0021 18.4 3.1 22 248-269 8-29 (39)
224 PRK09875 putative hydrolase; P 27.0 5E+02 0.011 23.9 11.0 52 39-94 32-84 (292)
225 PRK12360 4-hydroxy-3-methylbut 26.9 4.9E+02 0.011 23.9 8.8 43 252-295 225-273 (281)
226 PRK14476 nitrogenase molybdenu 26.8 6.2E+02 0.013 24.9 14.7 108 62-182 72-200 (455)
227 KOG1356 Putative transcription 26.7 1.4E+02 0.003 31.5 5.7 211 81-336 645-866 (889)
228 cd00674 LysRS_core_class_I cat 26.6 1.6E+02 0.0034 28.0 5.8 50 107-159 103-152 (353)
229 TIGR02932 vnfK_nitrog V-contai 26.6 6.3E+02 0.014 24.9 13.9 110 61-183 68-198 (457)
230 KOG0259 Tyrosine aminotransfer 26.6 6E+02 0.013 24.6 13.6 162 19-214 62-242 (447)
231 PRK05799 coproporphyrinogen II 26.4 4.7E+02 0.01 24.7 9.2 27 105-132 163-189 (374)
232 COG4152 ABC-type uncharacteriz 26.4 5E+02 0.011 23.7 8.4 71 103-175 100-199 (300)
233 TIGR02090 LEU1_arch isopropylm 26.2 4.2E+02 0.0092 25.1 8.7 97 104-208 18-129 (363)
234 PF02401 LYTB: LytB protein; 26.1 2.5E+02 0.0054 25.8 6.8 44 252-296 225-274 (281)
235 TIGR01861 ANFD nitrogenase iro 25.8 6.9E+02 0.015 25.1 14.5 106 61-181 106-232 (513)
236 PF01118 Semialdhyde_dh: Semia 25.5 71 0.0015 24.8 2.8 28 39-66 75-102 (121)
237 TIGR00737 nifR3_yhdG putative 25.5 5.4E+02 0.012 23.7 12.1 138 39-188 73-226 (319)
238 PRK07531 bifunctional 3-hydrox 25.5 6.4E+02 0.014 25.0 10.2 124 125-273 80-218 (495)
239 PRK02412 aroD 3-dehydroquinate 25.4 4.9E+02 0.011 23.2 17.0 159 39-211 26-204 (253)
240 PRK06015 keto-hydroxyglutarate 25.4 2.8E+02 0.0061 24.0 6.7 88 106-209 14-102 (201)
241 PRK08208 coproporphyrinogen II 25.4 5.4E+02 0.012 25.0 9.5 108 20-164 152-273 (430)
242 COG4626 Phage terminase-like p 25.1 2.9E+02 0.0064 27.8 7.4 75 137-214 409-486 (546)
243 PF04481 DUF561: Protein of un 25.0 2.4E+02 0.0052 24.9 6.0 24 39-62 25-48 (242)
244 PRK08776 cystathionine gamma-s 24.8 2.9E+02 0.0062 26.7 7.4 73 143-215 112-186 (405)
245 PRK08084 DNA replication initi 24.7 2.4E+02 0.0052 24.8 6.4 45 125-169 97-145 (235)
246 cd02742 GH20_hexosaminidase Be 24.5 1.1E+02 0.0024 28.2 4.3 16 194-209 75-90 (303)
247 PRK07328 histidinol-phosphatas 24.5 5.1E+02 0.011 23.2 13.7 51 111-162 94-161 (269)
248 cd07945 DRE_TIM_CMS Leptospira 24.0 1.6E+02 0.0034 26.9 5.2 97 104-209 15-133 (280)
249 TIGR03597 GTPase_YqeH ribosome 24.0 6.2E+02 0.013 23.9 10.7 120 38-169 48-170 (360)
250 TIGR03070 couple_hipB transcri 24.0 68 0.0015 20.6 2.1 21 252-272 5-25 (58)
251 PRK06298 type III secretion sy 23.9 79 0.0017 30.1 3.2 26 194-219 293-318 (356)
252 PF07994 NAD_binding_5: Myo-in 23.8 5.8E+02 0.013 23.6 9.1 145 106-292 130-283 (295)
253 TIGR03849 arch_ComA phosphosul 23.8 2.4E+02 0.0051 25.2 6.0 97 111-209 11-118 (237)
254 PF01408 GFO_IDH_MocA: Oxidore 23.6 3.2E+02 0.007 20.5 9.5 44 169-215 54-97 (120)
255 TIGR02082 metH 5-methyltetrahy 23.6 1.1E+03 0.023 26.6 14.5 101 106-211 366-471 (1178)
256 PLN00191 enolase 23.6 7.2E+02 0.016 24.6 10.4 97 105-210 295-394 (457)
257 cd03174 DRE_TIM_metallolyase D 23.5 5.1E+02 0.011 22.8 19.2 105 38-161 16-135 (265)
258 TIGR00538 hemN oxygen-independ 23.4 7E+02 0.015 24.4 10.3 26 105-131 215-240 (455)
259 TIGR01496 DHPS dihydropteroate 23.2 5.5E+02 0.012 23.0 14.3 100 105-211 20-125 (257)
260 PRK14456 ribosomal RNA large s 23.1 6.6E+02 0.014 24.0 10.0 100 118-217 227-355 (368)
261 COG1523 PulA Type II secretory 23.0 67 0.0014 33.5 2.7 77 115-213 206-287 (697)
262 TIGR03247 glucar-dehydr glucar 23.0 7.2E+02 0.016 24.3 14.7 86 128-213 252-338 (441)
263 cd08583 PI-PLCc_GDPD_SF_unchar 22.9 5.1E+02 0.011 22.6 9.4 22 39-60 13-34 (237)
264 PRK15108 biotin synthase; Prov 22.8 6.4E+02 0.014 23.7 10.6 107 105-216 76-196 (345)
265 COG0820 Predicted Fe-S-cluster 22.7 3.7E+02 0.0081 25.5 7.3 89 128-217 215-332 (349)
266 cd03325 D-galactonate_dehydrat 22.6 6.4E+02 0.014 23.6 16.0 82 126-211 202-285 (352)
267 cd07938 DRE_TIM_HMGL 3-hydroxy 22.4 4.4E+02 0.0096 23.9 7.8 99 104-208 16-131 (274)
268 COG1751 Uncharacterized conser 22.3 2.8E+02 0.0061 23.0 5.6 73 39-124 12-85 (186)
269 TIGR00035 asp_race aspartate r 22.2 3.9E+02 0.0085 23.3 7.2 64 104-168 13-88 (229)
270 cd08556 GDPD Glycerophosphodie 22.1 4.4E+02 0.0096 21.5 8.9 23 39-61 11-33 (189)
271 PRK14466 ribosomal RNA large s 22.0 2.4E+02 0.0053 26.7 6.0 88 128-215 210-325 (345)
272 TIGR03278 methan_mark_10 putat 21.8 7.4E+02 0.016 24.0 11.1 111 104-217 53-179 (404)
273 cd03329 MR_like_4 Mandelate ra 21.6 6.9E+02 0.015 23.6 15.0 151 39-211 143-299 (368)
274 PRK00915 2-isopropylmalate syn 21.6 3.5E+02 0.0076 27.1 7.5 98 103-208 21-137 (513)
275 PF01175 Urocanase: Urocanase; 21.6 2.3E+02 0.0049 28.3 5.8 117 45-175 106-244 (546)
276 PF01527 HTH_Tnp_1: Transposas 21.5 62 0.0013 22.6 1.6 39 39-79 8-46 (76)
277 cd08590 PI-PLCc_Rv2075c_like C 21.4 3.3E+02 0.0071 24.7 6.6 18 45-62 45-62 (267)
278 TIGR01290 nifB nitrogenase cof 21.3 7.8E+02 0.017 24.1 12.6 112 103-217 58-200 (442)
279 PF10171 DUF2366: Uncharacteri 21.3 1.6E+02 0.0035 24.8 4.3 49 111-162 66-114 (173)
280 cd00248 Mth938-like Mth938-lik 21.3 2.3E+02 0.0051 21.7 4.9 53 161-213 36-88 (109)
281 PRK09413 IS2 repressor TnpA; R 21.3 2.6E+02 0.0057 21.7 5.3 41 38-80 13-53 (121)
282 PF02796 HTH_7: Helix-turn-hel 21.3 2E+02 0.0044 17.9 3.8 15 253-267 23-37 (45)
283 COG3215 PilZ Tfp pilus assembl 21.3 2.9E+02 0.0062 21.2 5.0 75 44-120 23-106 (117)
284 COG1026 Predicted Zn-dependent 21.1 4.6E+02 0.01 28.5 8.3 72 245-316 414-493 (978)
285 cd00405 PRAI Phosphoribosylant 21.1 3.1E+02 0.0067 23.4 6.2 67 118-186 15-82 (203)
286 PRK06740 histidinol-phosphatas 21.1 6.9E+02 0.015 23.4 10.5 49 112-161 156-221 (331)
287 PRK04390 rnpA ribonuclease P; 21.0 4.1E+02 0.0089 20.7 7.1 63 81-152 44-109 (120)
288 PRK09490 metH B12-dependent me 20.9 1.2E+03 0.027 26.3 13.9 168 39-212 290-488 (1229)
289 cd04733 OYE_like_2_FMN Old yel 20.9 6.9E+02 0.015 23.3 12.9 94 82-183 214-321 (338)
290 TIGR01404 FlhB_rel_III type II 20.9 94 0.002 29.4 3.1 35 194-228 291-325 (342)
291 PRK09454 ugpQ cytoplasmic glyc 20.8 5.9E+02 0.013 22.5 14.7 22 39-60 20-41 (249)
292 PF01081 Aldolase: KDPG and KH 20.7 3E+02 0.0066 23.7 5.9 87 107-209 19-106 (196)
293 PRK13109 flhB flagellar biosyn 20.7 97 0.0021 29.5 3.1 26 194-219 301-326 (358)
294 PRK14464 ribosomal RNA large s 20.7 5.6E+02 0.012 24.2 8.2 80 138-217 223-319 (344)
295 PRK06552 keto-hydroxyglutarate 20.6 4E+02 0.0086 23.2 6.8 88 106-209 23-114 (213)
296 PRK12721 secretion system appa 20.6 98 0.0021 29.3 3.2 26 194-219 292-317 (349)
297 PF05368 NmrA: NmrA-like famil 20.6 4.4E+02 0.0095 22.6 7.3 84 126-217 23-107 (233)
298 cd01075 NAD_bind_Leu_Phe_Val_D 20.6 1.4E+02 0.0031 25.6 4.0 71 196-275 124-196 (200)
299 PF13518 HTH_28: Helix-turn-he 20.5 1.2E+02 0.0026 19.1 2.7 22 253-275 14-35 (52)
300 PRK07003 DNA polymerase III su 20.3 1.1E+03 0.023 25.3 13.6 95 106-206 100-197 (830)
301 COG2987 HutU Urocanate hydrata 20.2 2.6E+02 0.0056 27.5 5.7 101 67-181 148-261 (561)
302 PF09989 DUF2229: CoA enzyme a 20.2 1.9E+02 0.0041 25.4 4.7 32 179-210 187-218 (221)
303 COG2256 MGS1 ATPase related to 20.2 8.2E+02 0.018 23.9 9.2 103 45-166 37-143 (436)
304 PRK09389 (R)-citramalate synth 20.1 4.5E+02 0.0098 26.2 7.8 99 103-208 19-131 (488)
305 TIGR03699 mena_SCO4550 menaqui 20.0 6.6E+02 0.014 23.3 8.7 24 38-61 72-95 (340)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=1.7e-68 Score=494.73 Aligned_cols=306 Identities=43% Similarity=0.694 Sum_probs=274.0
Q ss_pred CCceecCCCCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCccccccccCCCcHHHHHHHHHhcCC-CCCeE
Q 019203 8 VPRVKLGTQGLEVSKLGFGCMNLSGGYSSPVSEEDGITMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLP-REKIQ 86 (344)
Q Consensus 8 m~~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~sE~~lg~~l~~~~-r~~~~ 86 (344)
|++|+||++|++||+||||||.+|+.+.. .+.+++.++|++|+++||||||||+.||.|.||+++|++|+..+ |++++
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~~~~-~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~~~Rd~vv 79 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGDTDD-EEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKERGRRDKVV 79 (316)
T ss_pred CCceecCCCCceecceeeeccccCCCCCc-hhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhccCCCCeEE
Confidence 78999999999999999999999874322 25667888999999999999999999999999999999999744 89999
Q ss_pred EEeccCcCCCCC-CccccCCChHHHHHHHHHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEEecCCCC
Q 019203 87 VATKFGIAGIGV-AGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEAS 165 (344)
Q Consensus 87 i~tK~~~~~~~~-~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~iGvs~~~ 165 (344)
|+||++.....+ +....+.++++|+++++.||+|||||||||||+|+||...+.+|++++|.+|+++||||+||+||++
T Consensus 80 IaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p~~e~~~aL~~l~~~G~ir~iG~S~~~ 159 (316)
T COG0667 80 IATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETPIEETLEALDELVREGKIRYIGVSNYS 159 (316)
T ss_pred EEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCC
Confidence 999999876432 1113678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc-CCcceeeccccccccchHhhHHHHHHHhCCceeecccCcccccCCCCCCCCCCCCccccc-ccCCcCcc
Q 019203 166 PGTIRRAHAV-HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSFLHF-LPRFKGEN 243 (344)
Q Consensus 166 ~~~l~~~~~~-~~~~~~q~~~n~l~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~-~~~~~~~~ 243 (344)
.+++.++++. .+++++|.+||+++|+.+.+++++|+++||++++||||++|+|+|++... + .+.+.. .+.+..+.
T Consensus 160 ~~~i~~a~~~~~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~G~Ltgk~~~~--~-~~~r~~~~~~~~~~~ 236 (316)
T COG0667 160 AEQIAEALAVAAPIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLASGLLTGKYLPG--P-EGSRASELPRFQREL 236 (316)
T ss_pred HHHHHHHHHhcCCceeecccCccccccchhHHHHHHHHcCCeEEEecCccccccCCCcCCC--c-chhhccccccchhhh
Confidence 9999999999 59999999999999877777999999999999999999999999994433 2 222222 24555667
Q ss_pred hhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHhccCCCCCHHHHHHHHhhCCC
Q 019203 244 LDRNKSIYFRIGNLAKKYNCTSAQLALAWVLGQGDDVVPIPGTTKMKNLDDNIDSLRIKLTKEDLKEISDAVPI 317 (344)
Q Consensus 244 ~~~~~~~~~~l~~ia~~~~~s~aqlal~~~l~~~~v~~vi~G~~~~~~l~enl~a~~~~Lt~~~~~~i~~~~~~ 317 (344)
.+........+.++|+++|+|++|+||+|++++|.+++||+|+++++||++|+++++..|+++++++|++....
T Consensus 237 ~~~~~~~~~~l~~~a~~~g~t~aq~ALawvl~~~~v~~~I~Ga~~~~qL~en~~A~~~~L~~~~~~~l~~~~~~ 310 (316)
T COG0667 237 TERGLAILRALEELAKELGATPAQVALAWVLAQPGVTSPIVGASKAEQLEENLAALDIKLSEEELAALDEISAE 310 (316)
T ss_pred hHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceEeecCCCHHHHHHHHHHhcCCCCHHHHHHHHHHhhh
Confidence 78889999999999999999999999999999999999999999999999999999999999999999988764
No 2
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=4.1e-67 Score=476.18 Aligned_cols=321 Identities=44% Similarity=0.713 Sum_probs=286.9
Q ss_pred ccccCCCCceecCCCCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCccccccccCCCcHHHHHHHHHhc--
Q 019203 2 AEEKLQVPRVKLGTQGLEVSKLGFGCMNLSGGYSSPVSEEDGITMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ-- 79 (344)
Q Consensus 2 ~~~~~~m~~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~sE~~lg~~l~~-- 79 (344)
++....|+|+.+|++|++||++|||||.+.. |+...++++|.++|++|+++|+||||||++||+|.||.++|+++++
T Consensus 6 ~~~~~~~~~~~lg~~gl~Vs~lglG~m~~~~-~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~~ 84 (336)
T KOG1575|consen 6 PSTELGMLRRKLGNSGLKVSPLGLGCMGWTT-FGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSRG 84 (336)
T ss_pred ccchhcceeeeccCCCceecceeecceeeec-cccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhcC
Confidence 3445579999999999999999999985544 4444699999999999999999999999999999999999999998
Q ss_pred CCCCCeEEEeccCcCCCCCCccccCCChHHHHHHHHHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEE
Q 019203 80 LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYI 159 (344)
Q Consensus 80 ~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~i 159 (344)
.+|++++|+||++.... .......+...+...++.||++||++||||||+||+|...+.++++++|.+++++||||+|
T Consensus 85 ~~R~~vviaTK~~~~~~--~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~piee~m~aL~~lve~Gki~yi 162 (336)
T KOG1575|consen 85 WRRDKVVIATKFGFDYG--GETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVPIEETMRALTDLVEQGKIRYW 162 (336)
T ss_pred CcCCcEEEEEEEeccCC--CcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCCHHHHHHHHHHHHhcCceEEE
Confidence 57999999999998772 2234678899999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHhhcCC--cceeeccccccccchH-hhHHHHHHHhCCceeecccCcccccCCC-CCCCCCCCCccccc
Q 019203 160 GLSEASPGTIRRAHAVHP--ITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRGFFGGK-AVVENVPADSFLHF 235 (344)
Q Consensus 160 Gvs~~~~~~l~~~~~~~~--~~~~q~~~n~l~~~~~-~~l~~~~~~~gi~v~a~spl~~G~L~g~-~~~~~~~~~~~~~~ 235 (344)
|+|+++++++.++....+ +.++|++||++.|+.+ .+++++|++.||++++||||++|+|+|+ ...+..+.+..+..
T Consensus 163 GlSe~sa~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk~~~~e~~~~~~~~~~ 242 (336)
T KOG1575|consen 163 GLSEWSAEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTGKYKLGEDSRNGDKRFQ 242 (336)
T ss_pred EeccCCHHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceeccCccccccccccccccc
Confidence 999999999999999987 9999999999999955 6699999999999999999999999999 55566666554332
Q ss_pred c----cCCcCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHhccCCCCCHHHHHHH
Q 019203 236 L----PRFKGENLDRNKSIYFRIGNLAKKYNCTSAQLALAWVLGQGDDVVPIPGTTKMKNLDDNIDSLRIKLTKEDLKEI 311 (344)
Q Consensus 236 ~----~~~~~~~~~~~~~~~~~l~~ia~~~~~s~aqlal~~~l~~~~v~~vi~G~~~~~~l~enl~a~~~~Lt~~~~~~i 311 (344)
. +.+... +..+..++.+.++|+++|+|++|+||+|+++++.+++||||+++++||+||++|+.+.||++++.+|
T Consensus 243 ~~~~~~~~~~~--~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~ve~l~eni~Al~~~Lt~e~~~~l 320 (336)
T KOG1575|consen 243 FLGLSPQTEEG--DKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKVSSPIPGASKIEQLKENIGALSVKLTPEEIKEL 320 (336)
T ss_pred ccccccccchh--hhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCcHHHHHHHHhhhhccCCHHHHHHH
Confidence 2 222222 5678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCccCCCCCch
Q 019203 312 SDAVPIEEVAGNRDPE 327 (344)
Q Consensus 312 ~~~~~~~~~~~~~~~~ 327 (344)
+++.+.....+.+|++
T Consensus 321 ~~~~~~~~~~~~~~~~ 336 (336)
T KOG1575|consen 321 EEIIDKILGFGPRSIK 336 (336)
T ss_pred HHhhccccCcCCCCCC
Confidence 9999999988888763
No 3
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=1.7e-61 Score=456.18 Aligned_cols=307 Identities=29% Similarity=0.388 Sum_probs=255.8
Q ss_pred CCceecCCCCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCccccccccC-------CCcHHHHHHHHHhc-
Q 019203 8 VPRVKLGTQGLEVSKLGFGCMNLSGGYSSPVSEEDGITMIKHAFSKGITFFDTADVYG-------QNANEVLLGKALKQ- 79 (344)
Q Consensus 8 m~~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~Dta~~Yg-------~g~sE~~lg~~l~~- 79 (344)
|+||+||+||++||+||||||++|+ ..+.+++.++|++|+++|||+||||+.|| .|.||+++|++|++
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~----~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~ 76 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGE----QNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKR 76 (346)
T ss_pred CCceecCCCCCccccEeEeccccCC----CCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhc
Confidence 7899999999999999999999874 23678999999999999999999999998 48899999999985
Q ss_pred CCCCCeEEEeccCcCCCCCCc---cccCCChHHHHHHHHHHHhhcCCCceeEEEecCCCC-----------------CCC
Q 019203 80 LPREKIQVATKFGIAGIGVAG---VIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDT-----------------SVP 139 (344)
Q Consensus 80 ~~r~~~~i~tK~~~~~~~~~~---~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~-----------------~~~ 139 (344)
.+|++++|+||++........ ...+.+++.+++++++||++||+||||||++|||+. ..+
T Consensus 77 ~~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~ 156 (346)
T PRK10625 77 GSREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVS 156 (346)
T ss_pred CCcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccccCCCC
Confidence 359999999998642210000 012478999999999999999999999999999964 246
Q ss_pred HHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhc------CCcceeeccccccccchHhhHHHHHHHhCCceeecccC
Q 019203 140 IEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV------HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPL 213 (344)
Q Consensus 140 ~~e~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~------~~~~~~q~~~n~l~~~~~~~l~~~~~~~gi~v~a~spl 213 (344)
++++|++|++|+++||||+||+|||+.+++++++.. ..++++|++||++++..+.+++++|+++||++++|+||
T Consensus 157 ~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via~spL 236 (346)
T PRK10625 157 LLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCL 236 (346)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEEeccc
Confidence 789999999999999999999999999988776432 35788999999999876678999999999999999999
Q ss_pred cccccCCCCCCCCCCCCcccccccCCcCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEEecCCCCHHHHH
Q 019203 214 GRGFFGGKAVVENVPADSFLHFLPRFKGENLDRNKSIYFRIGNLAKKYNCTSAQLALAWVLGQGDDVVPIPGTTKMKNLD 293 (344)
Q Consensus 214 ~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~aqlal~~~l~~~~v~~vi~G~~~~~~l~ 293 (344)
++|+|+++......|.+........|............+.+.++|+++|+|++|+||+|++++|.|+++|+|+++++||+
T Consensus 237 ~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~~v~~~I~G~~~~~~l~ 316 (346)
T PRK10625 237 AFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTLLGATTMEQLK 316 (346)
T ss_pred cCeeccCCCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEeCCCCHHHHH
Confidence 99999998433222322110111112222224456778899999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCHHHHHHHHhhCCCC
Q 019203 294 DNIDSLRIKLTKEDLKEISDAVPIE 318 (344)
Q Consensus 294 enl~a~~~~Lt~~~~~~i~~~~~~~ 318 (344)
+|+++++++|+++++++|+++.+..
T Consensus 317 en~~a~~~~L~~~~~~~l~~~~~~~ 341 (346)
T PRK10625 317 TNIESLHLTLSEEVLAEIEAVHQVY 341 (346)
T ss_pred HHHhhccCCCCHHHHHHHHHHHhhc
Confidence 9999999999999999999997643
No 4
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=1.9e-61 Score=450.63 Aligned_cols=298 Identities=30% Similarity=0.461 Sum_probs=251.9
Q ss_pred ceecCCCCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCccccccccCCCcHHHHHHHHHhc--CCCCCeEE
Q 019203 10 RVKLGTQGLEVSKLGFGCMNLSGGYSSPVSEEDGITMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ--LPREKIQV 87 (344)
Q Consensus 10 ~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~sE~~lg~~l~~--~~r~~~~i 87 (344)
||+||++|++||+||||||++. |...+.+++.++|++|+++|||+||||+.||.|.||+++|++|+. .+|++++|
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~~---g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~~~R~~~~i 77 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVTF---GGQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKKGWRRSSYVI 77 (317)
T ss_pred CcccCCCCCeecceeecCCccC---CCCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhcCCCcccEEE
Confidence 5889999999999999999742 223478899999999999999999999999999999999999985 36999999
Q ss_pred EeccCcCCCCCCccccCCChHHHHHHHHHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEEecCCCCHH
Q 019203 88 ATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPG 167 (344)
Q Consensus 88 ~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~iGvs~~~~~ 167 (344)
+||++..... ....+.+++.+++++++||++||+||||+|++|+|+...+++++|++|++|+++||||+||+|||+.+
T Consensus 78 aTK~~~~~~~--~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~~~e~~~aL~~l~~~G~ir~iGvSn~~~~ 155 (317)
T TIGR01293 78 TTKIFWGGKA--ETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTPMEETVRAMTYVINQGMAMYWGTSRWSSM 155 (317)
T ss_pred EeeeccCCCC--CCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCCHH
Confidence 9998643210 01234689999999999999999999999999999988889999999999999999999999999999
Q ss_pred HHHHHhhc------CCcceeeccccccccch-HhhHHHHHHHhCCceeecccCcccccCCCCCCCCCCCCccccccc---
Q 019203 168 TIRRAHAV------HPITAVQMEWSLWTRDI-EEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSFLHFLP--- 237 (344)
Q Consensus 168 ~l~~~~~~------~~~~~~q~~~n~l~~~~-~~~l~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~--- 237 (344)
++.++... .+++++|++||+++++. +.+++++|+++||++++|+||++|+|++++... .+.+. +...+
T Consensus 156 ~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Ltg~~~~~-~~~~~-~~~~~~~~ 233 (317)
T TIGR01293 156 EIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVSGKYDSG-IPPYS-RATLKGYQ 233 (317)
T ss_pred HHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccCCCCCCC-CCCcc-cccccccc
Confidence 98776443 46789999999999874 568999999999999999999999999984332 23222 11111
Q ss_pred CC----cCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHhccCC--CCCHHHHHHH
Q 019203 238 RF----KGENLDRNKSIYFRIGNLAKKYNCTSAQLALAWVLGQGDDVVPIPGTTKMKNLDDNIDSLRI--KLTKEDLKEI 311 (344)
Q Consensus 238 ~~----~~~~~~~~~~~~~~l~~ia~~~~~s~aqlal~~~l~~~~v~~vi~G~~~~~~l~enl~a~~~--~Lt~~~~~~i 311 (344)
.+ ........+..++.+.++|+++|+|++|+||+|++++|+++++|+|+++++||++|+++++. +||++++++|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~~~~Ls~e~~~~l 313 (317)
T TIGR01293 234 WLKDKILSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSAEQLMENLGSLQVLPKLSSSIIHEI 313 (317)
T ss_pred hhhhhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHHHhhccCCCCHHHHHHH
Confidence 01 11222345667789999999999999999999999999999999999999999999999987 9999999999
Q ss_pred Hhh
Q 019203 312 SDA 314 (344)
Q Consensus 312 ~~~ 314 (344)
+++
T Consensus 314 ~~~ 316 (317)
T TIGR01293 314 DSI 316 (317)
T ss_pred Hhh
Confidence 875
No 5
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=5.1e-61 Score=452.39 Aligned_cols=308 Identities=26% Similarity=0.466 Sum_probs=256.4
Q ss_pred cCCCCceecCCCCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCccccccccCC--CcHHHHHHHHHhcC--
Q 019203 5 KLQVPRVKLGTQGLEVSKLGFGCMNLSGGYSSPVSEEDGITMIKHAFSKGITFFDTADVYGQ--NANEVLLGKALKQL-- 80 (344)
Q Consensus 5 ~~~m~~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~--g~sE~~lg~~l~~~-- 80 (344)
...|+||+||+||++||+||||||+. +|...+.+++.++|++|++.|||+||||+.||. |.||+++|++|++.
T Consensus 10 ~~~m~~r~lg~tg~~vs~lglG~~~~---~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~~ 86 (346)
T PRK09912 10 YGQMQYRYCGKSGLRLPALSLGLWHN---FGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFA 86 (346)
T ss_pred CCCcceeecCCCCcccccccccCccc---cCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhccc
Confidence 46799999999999999999999962 232235678899999999999999999999995 89999999999852
Q ss_pred -CCCCeEEEeccCcCCCCCCccccCCChHHHHHHHHHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEE
Q 019203 81 -PREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYI 159 (344)
Q Consensus 81 -~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~i 159 (344)
+|++++|+||+|.....+ ....+.+++.+++++++||+|||+||||+|++|+|+...+++++|++|++|+++||||+|
T Consensus 87 ~~Rd~~~I~TK~g~~~~~~-~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~GkIr~i 165 (346)
T PRK09912 87 AYRDELIISTKAGYDMWPG-PYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYV 165 (346)
T ss_pred CCCCeEEEEEEecccCCCC-cCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEE
Confidence 599999999998532111 112346899999999999999999999999999999888899999999999999999999
Q ss_pred ecCCCCHHHHHHHhhc-----CCcceeeccccccccchH-hhHHHHHHHhCCceeecccCcccccCCCCCCCCCCCCccc
Q 019203 160 GLSEASPGTIRRAHAV-----HPITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSFL 233 (344)
Q Consensus 160 Gvs~~~~~~l~~~~~~-----~~~~~~q~~~n~l~~~~~-~~l~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~ 233 (344)
|||||++++++++.+. .+++++|++||++++..+ .+++++|+++||++++|+||++|+|++++... .|.+...
T Consensus 166 GvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt~~~~~~-~~~~~~~ 244 (346)
T PRK09912 166 GISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGKYLNG-IPQDSRM 244 (346)
T ss_pred EecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCccccCCCCCC-CCCCccc
Confidence 9999999988765542 367899999999998654 57999999999999999999999999984222 1221100
Q ss_pred c----cccCCcCcc-hhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHhcc-CCCCCHHH
Q 019203 234 H----FLPRFKGEN-LDRNKSIYFRIGNLAKKYNCTSAQLALAWVLGQGDDVVPIPGTTKMKNLDDNIDSL-RIKLTKED 307 (344)
Q Consensus 234 ~----~~~~~~~~~-~~~~~~~~~~l~~ia~~~~~s~aqlal~~~l~~~~v~~vi~G~~~~~~l~enl~a~-~~~Lt~~~ 307 (344)
. ..+.+.+.. .+..+...+.+.++|+++|+|++|+||+|++++|.|++||+|+++++||++|++++ .++|++++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~~~L~~e~ 324 (346)
T PRK09912 245 HREGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIGASRAEQLEENVQALNNLTFSTEE 324 (346)
T ss_pred cccccchhhhchhhccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHhhhcCCCCCHHH
Confidence 0 001111111 13445677899999999999999999999999999999999999999999999998 47999999
Q ss_pred HHHHHhhCCC
Q 019203 308 LKEISDAVPI 317 (344)
Q Consensus 308 ~~~i~~~~~~ 317 (344)
+++|+++.+.
T Consensus 325 ~~~l~~~~~~ 334 (346)
T PRK09912 325 LAQIDQHIAD 334 (346)
T ss_pred HHHHHHhhCc
Confidence 9999998865
No 6
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=5.7e-60 Score=421.99 Aligned_cols=259 Identities=32% Similarity=0.529 Sum_probs=233.0
Q ss_pred CCceecCCCCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCccccccccCCCcHHHHHHHHHhc--CCCCCe
Q 019203 8 VPRVKLGTQGLEVSKLGFGCMNLSGGYSSPVSEEDGITMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ--LPREKI 85 (344)
Q Consensus 8 m~~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~sE~~lg~~l~~--~~r~~~ 85 (344)
+.+.++ ++|.+||.||||||+++. .+.+.+.+.+|++.|+|+||||..|| +|+.+|+++++ ++|+++
T Consensus 3 ~~~~~l-~~g~~iP~iGlGt~~~~~-------~~~~~~av~~Al~~Gyr~IDTA~~Yg---nE~~VG~aI~~s~v~Reel 71 (280)
T COG0656 3 KTKVTL-NNGVEIPAIGLGTWQIGD-------DEWAVRAVRAALELGYRLIDTAEIYG---NEEEVGEAIKESGVPREEL 71 (280)
T ss_pred Cceeec-CCCCcccCcceEeeecCC-------chhHHHHHHHHHHhCcceEecHhHhc---CHHHHHHHHHhcCCCHHHe
Confidence 456778 567789999999998864 22388999999999999999999999 79999999998 789999
Q ss_pred EEEeccCcCCCCCCccccCCChHHHHHHHHHHHhhcCCCceeEEEecCCCCC--CCHHHHHHHHHHHHHcCcccEEecCC
Q 019203 86 QVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS--VPIEETIGEMKKLVEEGKIKYIGLSE 163 (344)
Q Consensus 86 ~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~--~~~~e~~~~L~~l~~~G~ir~iGvs~ 163 (344)
||+||++... .+.+.+.+++++||++||+||||||+||||... ..+.|+|++|++++++|+||+|||||
T Consensus 72 FittKvw~~~---------~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ir~IGVSN 142 (280)
T COG0656 72 FITTKVWPSD---------LGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGLIRAIGVSN 142 (280)
T ss_pred EEEeecCCcc---------CCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCCccEEEeeC
Confidence 9999998664 568889999999999999999999999999763 33789999999999999999999999
Q ss_pred CCHHHHHHHhhcC--CcceeeccccccccchHhhHHHHHHHhCCceeecccCcccc-cCCCCCCCCCCCCcccccccCCc
Q 019203 164 ASPGTIRRAHAVH--PITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGF-FGGKAVVENVPADSFLHFLPRFK 240 (344)
Q Consensus 164 ~~~~~l~~~~~~~--~~~~~q~~~n~l~~~~~~~l~~~~~~~gi~v~a~spl~~G~-L~g~~~~~~~~~~~~~~~~~~~~ 240 (344)
|+.++|++++... .|+++|++||++.++.+ +++||+++||.+++||||++|. |...
T Consensus 143 F~~~~L~~l~~~~~~~p~~NQIe~hp~~~q~e--l~~~~~~~gI~v~AysPL~~g~~l~~~------------------- 201 (280)
T COG0656 143 FGVEHLEELLSLAKVKPAVNQIEYHPYLRQPE--LLPFCQRHGIAVEAYSPLAKGGKLLDN------------------- 201 (280)
T ss_pred CCHHHHHHHHHhcCCCCceEEEEeccCCCcHH--HHHHHHHcCCEEEEECCcccccccccC-------------------
Confidence 9999999998874 48999999999999754 9999999999999999999654 3221
Q ss_pred CcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHhccCCCCCHHHHHHHHhhCCCCcc
Q 019203 241 GENLDRNKSIYFRIGNLAKKYNCTSAQLALAWVLGQGDDVVPIPGTTKMKNLDDNIDSLRIKLTKEDLKEISDAVPIEEV 320 (344)
Q Consensus 241 ~~~~~~~~~~~~~l~~ia~~~~~s~aqlal~~~l~~~~v~~vi~G~~~~~~l~enl~a~~~~Lt~~~~~~i~~~~~~~~~ 320 (344)
+.+.+||++||.|++|++|+|+++++. .|||.+++++|+++|++++++.||++|+++|+++....+.
T Consensus 202 -----------~~l~~Ia~k~g~t~AQv~L~W~i~~gv--~~Ipks~~~~ri~eN~~~~~f~Ls~ed~~~i~~l~~~~~~ 268 (280)
T COG0656 202 -----------PVLAEIAKKYGKTPAQVALRWHIQRGV--IVIPKSTTPERIRENLAAFDFELSEEDMAAIDALDRGYGR 268 (280)
T ss_pred -----------hHHHHHHHHhCCCHHHHHHHHHHhCCc--EEecCCCCHHHHHHHHhhhcCCCCHHHHHHHHhhccccCc
Confidence 589999999999999999999999994 9999999999999999999999999999999999987643
No 7
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=6.3e-59 Score=433.30 Aligned_cols=286 Identities=30% Similarity=0.482 Sum_probs=245.8
Q ss_pred ceecCCCCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCccccccccCCCcHHHHHHHHHhc--CCCCCeEE
Q 019203 10 RVKLGTQGLEVSKLGFGCMNLSGGYSSPVSEEDGITMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ--LPREKIQV 87 (344)
Q Consensus 10 ~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~sE~~lg~~l~~--~~r~~~~i 87 (344)
||+||+||++||.||||||++|+.|+. .+.+++.++|++|++.|||+||||+.||.|.||+.+|++|+. .+|++++|
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~~~~-~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~~~R~~v~I 79 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSVFGP-VSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKALGIPREKYVV 79 (314)
T ss_pred CCcCCCCCCcccCcccccccccCCCCC-CCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhCCCCcceEEE
Confidence 689999999999999999999876664 478899999999999999999999999999999999999986 46999999
Q ss_pred EeccCcCCCCCCccccCCChHHHHHHHHHHHhhcCCCceeEEEecCCCCC---CCHHHHHHHHHHHHHcCcccEEecCCC
Q 019203 88 ATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS---VPIEETIGEMKKLVEEGKIKYIGLSEA 164 (344)
Q Consensus 88 ~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~---~~~~e~~~~L~~l~~~G~ir~iGvs~~ 164 (344)
+||++.... ..+++++.+++++++||++||+||||+|+||+|+.. ..++++|++|++|+++||||+||+|||
T Consensus 80 ~TK~~~~~~-----~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~ 154 (314)
T PLN02587 80 STKCGRYGE-----GFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGKVRFIGITGL 154 (314)
T ss_pred EeccccCCC-----CCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 999984321 134689999999999999999999999999999742 356799999999999999999999999
Q ss_pred CHHHHHHHhhc---CCcce--eeccccccccchHhhHHHHHHHhCCceeecccCcccccCCCCCCCCCCCCcccccccCC
Q 019203 165 SPGTIRRAHAV---HPITA--VQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSFLHFLPRF 239 (344)
Q Consensus 165 ~~~~l~~~~~~---~~~~~--~q~~~n~l~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~~ 239 (344)
++++++.+... ..+++ +|++||++++.. .+++++|+++||++++|+||++|+|+++.... +
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ll~~~~~~gi~v~a~spl~~G~L~~~~~~~-------------~ 220 (314)
T PLN02587 155 PLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSL-EDLLPYLKSKGVGVISASPLAMGLLTENGPPE-------------W 220 (314)
T ss_pred CHHHHHHHHHhhhcCCCCeEEeccccCcchhhH-HHHHHHHHHcCceEEEechhhccccCCCCCCC-------------C
Confidence 99888776553 22333 578999987644 58999999999999999999999999862110 0
Q ss_pred cCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHhccC----CCCCHHHHHHHHhhC
Q 019203 240 KGENLDRNKSIYFRIGNLAKKYNCTSAQLALAWVLGQGDDVVPIPGTTKMKNLDDNIDSLR----IKLTKEDLKEISDAV 315 (344)
Q Consensus 240 ~~~~~~~~~~~~~~l~~ia~~~~~s~aqlal~~~l~~~~v~~vi~G~~~~~~l~enl~a~~----~~Lt~~~~~~i~~~~ 315 (344)
.+ ..+......+.++++|+++++|++|+||+|++++|.|++||+|+++++||++|++++. .+|+++++++|+++.
T Consensus 221 ~~-~~~~~~~~~~~l~~~a~~~~~s~aq~al~~~l~~~~v~~~i~G~~~~~~l~~nl~a~~~~~~~~l~~~~~~~l~~~~ 299 (314)
T PLN02587 221 HP-APPELKSACAAAATHCKEKGKNISKLALQYSLSNKDISTTLVGMNSVQQVEENVAAATELETSGIDEELLSEVEAIL 299 (314)
T ss_pred CC-CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEecCCCHHHHHHHHHHHhhcccCCCCHHHHHHHHHhh
Confidence 00 1134566778899999999999999999999999999999999999999999999976 379999999999988
Q ss_pred C
Q 019203 316 P 316 (344)
Q Consensus 316 ~ 316 (344)
+
T Consensus 300 ~ 300 (314)
T PLN02587 300 A 300 (314)
T ss_pred c
Confidence 6
No 8
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=2.4e-57 Score=417.49 Aligned_cols=280 Identities=41% Similarity=0.675 Sum_probs=251.6
Q ss_pred ceecCCCCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCccccccccCCCcHHHHHHHHHhcCC-CCCeEEE
Q 019203 10 RVKLGTQGLEVSKLGFGCMNLSGGYSSPVSEEDGITMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLP-REKIQVA 88 (344)
Q Consensus 10 ~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~sE~~lg~~l~~~~-r~~~~i~ 88 (344)
+++||+||++||+||||||.++..| .+.+++.+++++|++.|||+||||+.||.|.||+.+|++|+..+ |++++|+
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~~---~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~~~R~~~~i~ 77 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGGY---VDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKERGPREEVFIA 77 (285)
T ss_pred CcccCCCCceecCcceeccccCCCC---CCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhccCCcCcEEEE
Confidence 5789999999999999999987655 37889999999999999999999999999999999999999855 9999999
Q ss_pred eccCcCCCCCCccccCCChHHHHHHHHHHHhhcCCCceeEEEecCCCCCCC-HHHHHHHHHHHHHcCcccEEecCCCCHH
Q 019203 89 TKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVP-IEETIGEMKKLVEEGKIKYIGLSEASPG 167 (344)
Q Consensus 89 tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~-~~e~~~~L~~l~~~G~ir~iGvs~~~~~ 167 (344)
||++..... ..+.+++.+++++++||++||+||||+|+||+|+.... ..++|++|++++++|+||+||||+++++
T Consensus 78 tK~~~~~~~----~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~ 153 (285)
T cd06660 78 TKVGPRPGD----GRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIGVSNFSAE 153 (285)
T ss_pred eeecCCCCC----CCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEEEeeCCCHH
Confidence 999865421 14578999999999999999999999999999988765 8899999999999999999999999999
Q ss_pred HHHHHhhc--CCcceeeccccccccchHhhHHHHHHHhCCceeecccCcccccCCCCCC-CCCCCCcccccccCCcCcch
Q 019203 168 TIRRAHAV--HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVV-ENVPADSFLHFLPRFKGENL 244 (344)
Q Consensus 168 ~l~~~~~~--~~~~~~q~~~n~l~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~g~~~~-~~~~~~~~~~~~~~~~~~~~ 244 (344)
.+.++... .+|+++|++||++++....+++++|+++||++++|+||++|.|+++... ...+.
T Consensus 154 ~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~~~~~~~--------------- 218 (285)
T cd06660 154 QLEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAGGLLTGKYLPGAPPPE--------------- 218 (285)
T ss_pred HHHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccCceecCCCCCCCCCCh---------------
Confidence 99999888 7999999999999998766799999999999999999999999866221 11111
Q ss_pred hhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHhccCCCCCHHHHHHHHhh
Q 019203 245 DRNKSIYFRIGNLAKKYNCTSAQLALAWVLGQGDDVVPIPGTTKMKNLDDNIDSLRIKLTKEDLKEISDA 314 (344)
Q Consensus 245 ~~~~~~~~~l~~ia~~~~~s~aqlal~~~l~~~~v~~vi~G~~~~~~l~enl~a~~~~Lt~~~~~~i~~~ 314 (344)
......+..++++++++++|+|++|++++|.+++||+|+++++||++|+++...+||+++++.|+++
T Consensus 219 ---~~~~~~~~~~~~~~~~s~~q~al~~~l~~p~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~l~~~ 285 (285)
T cd06660 219 ---GDLLEALKEIAEKHGVTPAQVALRWLLQQPGVTSVIPGASSPERLEENLAALDFELSDEDLAALDAL 285 (285)
T ss_pred ---hhHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHhhccCCCCHHHHHHHhhC
Confidence 1145789999999999999999999999999999999999999999999999999999999999763
No 9
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=1.2e-56 Score=413.13 Aligned_cols=273 Identities=26% Similarity=0.450 Sum_probs=237.4
Q ss_pred eecCCCCccccccccccccCCC--CCCCCCCHHHHHHHHHHHHHcCCCccccccccCCCcHHHHHHHHHhcCCCCCeEEE
Q 019203 11 VKLGTQGLEVSKLGFGCMNLSG--GYSSPVSEEDGITMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVA 88 (344)
Q Consensus 11 ~~lg~tg~~vs~lglG~~~~~~--~~~~~~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~sE~~lg~~l~~~~r~~~~i~ 88 (344)
++| +|++||+||||||++|+ .||...+++++.++|++|+++|||+||||+.||+|.+|+++|++++. .|++++|+
T Consensus 10 ~~l--~g~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~-~R~~~~i~ 86 (290)
T PRK10376 10 FTL--GGRSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHP-YPDDLTIV 86 (290)
T ss_pred eec--CCeeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhc-CCCeEEEE
Confidence 445 49999999999999985 36654578889999999999999999999999999999999999974 59999999
Q ss_pred eccCcCCCCCCccccCCChHHHHHHHHHHHhhcCCCceeEEEecCCCC-----CCCHHHHHHHHHHHHHcCcccEEecCC
Q 019203 89 TKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDT-----SVPIEETIGEMKKLVEEGKIKYIGLSE 163 (344)
Q Consensus 89 tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~-----~~~~~e~~~~L~~l~~~G~ir~iGvs~ 163 (344)
||++......+.+..+.+++.+++++++||+|||+||||+|++|+++. ...++++|++|++|+++||||+|||||
T Consensus 87 TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~l~~~Gkir~iGvSn 166 (290)
T PRK10376 87 TKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAELQRQGLVRHIGLSN 166 (290)
T ss_pred eeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHHHHHCCceeEEEecC
Confidence 999764322112234678999999999999999999999999888521 235789999999999999999999999
Q ss_pred CCHHHHHHHhhcCCcceeeccccccccchHhhHHHHHHHhCCceeecccCcccccCCCCCCCCCCCCcccccccCCcCcc
Q 019203 164 ASPGTIRRAHAVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSFLHFLPRFKGEN 243 (344)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~q~~~n~l~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~ 243 (344)
|++++++++....+++++|++||++++.. .+++++|+++||++++|+||+++..
T Consensus 167 ~~~~~l~~~~~~~~~~~~q~~~~~~~~~~-~~~~~~~~~~gi~v~a~~pL~g~~~------------------------- 220 (290)
T PRK10376 167 VTPTQVAEARKIAEIVCVQNHYNLAHRAD-DALIDALARDGIAYVPFFPLGGFTP------------------------- 220 (290)
T ss_pred CCHHHHHHHHhhCCeEEEecccCCCcCCh-HHHHHHHHHcCCEEEEeecCCCCCh-------------------------
Confidence 99999999988889999999999998763 5799999999999999999973210
Q ss_pred hhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHhccCCCCCHHHHHHHHhhCCC
Q 019203 244 LDRNKSIYFRIGNLAKKYNCTSAQLALAWVLGQGDDVVPIPGTTKMKNLDDNIDSLRIKLTKEDLKEISDAVPI 317 (344)
Q Consensus 244 ~~~~~~~~~~l~~ia~~~~~s~aqlal~~~l~~~~v~~vi~G~~~~~~l~enl~a~~~~Lt~~~~~~i~~~~~~ 317 (344)
...+.+.++|+++++|++|+||+|+++++.+++||+|+++++|+++|+++++++|+++++++|+++.++
T Consensus 221 -----~~~~~l~~ia~~~~~t~aq~al~w~l~~~~~~~~i~G~~~~~~l~en~~a~~~~L~~e~~~~l~~~~~~ 289 (290)
T PRK10376 221 -----LQSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENLAAAELVLSEEVLAELDGIARE 289 (290)
T ss_pred -----hhhHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEeeCCCCHHHHHHHHhhccCCCCHHHHHHHHHHHhc
Confidence 012678999999999999999999999877778999999999999999999999999999999988654
No 10
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=9.8e-57 Score=413.03 Aligned_cols=276 Identities=37% Similarity=0.594 Sum_probs=235.4
Q ss_pred ccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCccccccccCCCcHHHHHHHHHhc--CCCCCeEEEeccCcCCCCCC
Q 019203 22 KLGFGCMNLSGGYSSPVSEEDGITMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ--LPREKIQVATKFGIAGIGVA 99 (344)
Q Consensus 22 ~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~sE~~lg~~l~~--~~r~~~~i~tK~~~~~~~~~ 99 (344)
+||||||++++. ..+.+++.++|+.|++.|||+||||+.||+|.||+.+|++|+. .+|++++|+||+... .
T Consensus 1 ~l~lG~~~~~~~---~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~~~~r~~~~i~tK~~~~----~ 73 (283)
T PF00248_consen 1 PLGLGTWRLGGE---RVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKSRVPRDDIFISTKVYGD----G 73 (283)
T ss_dssp SBEEECTTBTTT---TSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHTSSTGGGSEEEEEEESS----S
T ss_pred CEEEEccccCCC---CCCHHHHHHHHHHHHHcCCCeecccccccccccccccccccccccccccccccccccccc----c
Confidence 589999998763 4589999999999999999999999999999999999999998 789999999999222 1
Q ss_pred ccccCCChHHHHHHHHHHHhhcCCCceeEEEecCCCCCCC-HHHHHHHHHHHHHcCcccEEecCCCCHHHHHHH--hhcC
Q 019203 100 GVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVP-IEETIGEMKKLVEEGKIKYIGLSEASPGTIRRA--HAVH 176 (344)
Q Consensus 100 ~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~-~~e~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~--~~~~ 176 (344)
......+++.+++++++||++||+||||+|+||+|+.... .+++|++|++|+++|+||+||||+|+++.++++ ....
T Consensus 74 ~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 153 (283)
T PF00248_consen 74 KPEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQLEAALKIGSI 153 (283)
T ss_dssp STGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHTCTSS
T ss_pred cccccccccccccccccccccccccchhccccccccccccccchhhhhhhhccccccccccccccccccccccccccccc
Confidence 3356789999999999999999999999999999999888 899999999999999999999999999999998 5567
Q ss_pred CcceeeccccccccchHhhHHHHHHHhCCceeecccCcccccCCCC-CCCCCCCCcccccccCCcCcchhhhHHHHHHHH
Q 019203 177 PITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKA-VVENVPADSFLHFLPRFKGENLDRNKSIYFRIG 255 (344)
Q Consensus 177 ~~~~~q~~~n~l~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 255 (344)
+|+++|++||++.+....+++++|+++||++++|+|+++|+|+++. .....+..... ...+...+.+.
T Consensus 154 ~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~G~l~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~ 222 (283)
T PF00248_consen 154 PPDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAGGLLTGKYKSPPPPPSRASL-----------RDAQELADALR 222 (283)
T ss_dssp -ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGGGCGGTTTTTTTTSTTTSGS-----------STHGGGHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccCccccccccCCCccccccc-----------chhhhhhhhhh
Confidence 8999999999997777789999999999999999999999999873 22222221111 01456678999
Q ss_pred HHHHHcCCCHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHhccCCCCCHHHHHHHHhhC
Q 019203 256 NLAKKYNCTSAQLALAWVLGQGDDVVPIPGTTKMKNLDDNIDSLRIKLTKEDLKEISDAV 315 (344)
Q Consensus 256 ~ia~~~~~s~aqlal~~~l~~~~v~~vi~G~~~~~~l~enl~a~~~~Lt~~~~~~i~~~~ 315 (344)
++++++++|++|+||+|+++++.+++||+|+++++||++|+++++.+||++++++|++++
T Consensus 223 ~~a~~~g~s~~q~al~~~l~~~~~~~~i~g~~~~~~l~en~~a~~~~L~~~~~~~i~~~~ 282 (283)
T PF00248_consen 223 ELAEEHGVSPAQLALRWVLSHPGVASVIVGASSPEHLEENLAALDFPLTEEELAEIDQIL 282 (283)
T ss_dssp HHHHHHTSSHHHHHHHHHHTSHTTEEEEEB-SSHHHHHHHHGGSSSG--HHHHHHHHTTH
T ss_pred hhhhhcccccchhhhhhhhhccccccccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999875
No 11
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=2.5e-54 Score=393.20 Aligned_cols=246 Identities=29% Similarity=0.450 Sum_probs=220.6
Q ss_pred ccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCccccccccCCCcHHHHHHHHHhc--CCCCCeEEEeccCcCC
Q 019203 18 LEVSKLGFGCMNLSGGYSSPVSEEDGITMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ--LPREKIQVATKFGIAG 95 (344)
Q Consensus 18 ~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~sE~~lg~~l~~--~~r~~~~i~tK~~~~~ 95 (344)
++||.||||||+++ .+++.+++++|++.|||+||||+.|| +|+.+|++|+. .+|++++|+||++..
T Consensus 1 ~~vs~lglGt~~~~--------~~~~~~~i~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~R~~v~i~TK~~~~- 68 (267)
T PRK11172 1 MSIPAFGLGTFRLK--------DQVVIDSVKTALELGYRAIDTAQIYD---NEAAVGQAIAESGVPRDELFITTKIWID- 68 (267)
T ss_pred CCCCCEeeEccccC--------hHHHHHHHHHHHHcCCCEEEccchhC---CHHHHHHHHHHcCCChhHeEEEEEeCCC-
Confidence 36999999999753 36789999999999999999999999 69999999985 469999999998532
Q ss_pred CCCCccccCCChHHHHHHHHHHHhhcCCCceeEEEecCCCCC--CCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHh
Q 019203 96 IGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS--VPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAH 173 (344)
Q Consensus 96 ~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~--~~~~e~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~ 173 (344)
..+++.+++++++||+|||+||||+|++|+|++. .+.+++|++|++|+++||||+||||||+.+++++++
T Consensus 69 --------~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~ 140 (267)
T PRK11172 69 --------NLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTREIGISNFTIALMKQAI 140 (267)
T ss_pred --------CCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHHH
Confidence 3578999999999999999999999999999763 467899999999999999999999999999998887
Q ss_pred hc---CCcceeeccccccccchHhhHHHHHHHhCCceeecccCcccccCCCCCCCCCCCCcccccccCCcCcchhhhHHH
Q 019203 174 AV---HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSFLHFLPRFKGENLDRNKSI 250 (344)
Q Consensus 174 ~~---~~~~~~q~~~n~l~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (344)
+. .+++++|++||++.++ .+++++|+++||+|++|+||++|.+...
T Consensus 141 ~~~~~~~~~~~Q~~~~~~~~~--~~ll~~~~~~gi~v~a~spl~~G~~~~~----------------------------- 189 (267)
T PRK11172 141 AAVGAENIATNQIELSPYLQN--RKVVAFAKEHGIHVTSYMTLAYGKVLKD----------------------------- 189 (267)
T ss_pred HhcCCCCCeEEeeecCCCCCc--HHHHHHHHHCCCEEEEECCCCCCcccCC-----------------------------
Confidence 65 3679999999999874 5799999999999999999999865321
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHhccCCCCCHHHHHHHHhhCCC
Q 019203 251 YFRIGNLAKKYNCTSAQLALAWVLGQGDDVVPIPGTTKMKNLDDNIDSLRIKLTKEDLKEISDAVPI 317 (344)
Q Consensus 251 ~~~l~~ia~~~~~s~aqlal~~~l~~~~v~~vi~G~~~~~~l~enl~a~~~~Lt~~~~~~i~~~~~~ 317 (344)
+.+.++|+++|+|++|+||+|+++++. +||+|+++++||++|+++++++||++++++|+++.+.
T Consensus 190 -~~l~~~a~~~~~s~aqval~w~l~~~~--~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~i~~~~~~ 253 (267)
T PRK11172 190 -PVIARIAAKHNATPAQVILAWAMQLGY--SVIPSSTKRENLASNLLAQDLQLDAEDMAAIAALDRN 253 (267)
T ss_pred -HHHHHHHHHhCCCHHHHHHHHHHhCCC--EeecCCCCHHHHHHHHhhcCCCcCHHHHHHHhhhccC
Confidence 468899999999999999999999974 6999999999999999999999999999999999864
No 12
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=1.1e-54 Score=387.91 Aligned_cols=260 Identities=32% Similarity=0.482 Sum_probs=232.5
Q ss_pred ceecCCCCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCccccccccCCCcHHHHHHHHHhc------CCCC
Q 019203 10 RVKLGTQGLEVSKLGFGCMNLSGGYSSPVSEEDGITMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ------LPRE 83 (344)
Q Consensus 10 ~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~sE~~lg~~l~~------~~r~ 83 (344)
..+| ++|.+||.||||||+. +..++.+.++.|++.|++|||||..|+ +|+-+|++|++ .+|+
T Consensus 6 ~~~L-n~G~~mP~iGlGTw~~--------~~~~~~~aV~~Al~~GYRHIDtA~~Y~---NE~evG~aik~~i~~~~v~Re 73 (300)
T KOG1577|consen 6 TVKL-NNGFKMPIIGLGTWQS--------PPGQVAEAVKAAIKAGYRHIDTAHVYG---NEKEVGEAIKELLAEGGVKRE 73 (300)
T ss_pred eEec-cCCCccceeeeEeccc--------ChhhHHHHHHHHHHhCcceeechhhhC---ChHHHHHHHHHHhhhCCcchh
Confidence 6788 8999999999999962 678899999999999999999999999 69999999995 5899
Q ss_pred CeEEEeccCcCCCCCCccccCCChHHHHHHHHHHHhhcCCCceeEEEecCCCCC----------------CCHHHHHHHH
Q 019203 84 KIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS----------------VPIEETIGEM 147 (344)
Q Consensus 84 ~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~----------------~~~~e~~~~L 147 (344)
++||+||+|... ..++.++.++++||++||+||+|+|++|||-.. .+..++|++|
T Consensus 74 diFiTSKlw~~~---------~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~tW~am 144 (300)
T KOG1577|consen 74 DIFITSKLWPTD---------HAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIETWKAM 144 (300)
T ss_pred hheeeeccCccc---------cChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHHHHHHH
Confidence 999999998653 578889999999999999999999999999653 3467899999
Q ss_pred HHHHHcCcccEEecCCCCHHHHHHHhhc--CCcceeeccccccccchHhhHHHHHHHhCCceeecccCcccccCCCCCCC
Q 019203 148 KKLVEEGKIKYIGLSEASPGTIRRAHAV--HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVE 225 (344)
Q Consensus 148 ~~l~~~G~ir~iGvs~~~~~~l~~~~~~--~~~~~~q~~~n~l~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~g~~~~~ 225 (344)
++++++|++|+||||||+..++++++.. .+|.++|++++++.++ .++++||+++||.|.|||||+.+.= ++
T Consensus 145 E~~~~~Gl~rsIGVSNF~~~~le~ll~~~ki~P~vnQvE~HP~~~Q--~~L~~fCk~~~I~v~AYSpLg~~~~-~~---- 217 (300)
T KOG1577|consen 145 EKLVDEGLVRSIGVSNFNIKQLEELLNLAKIKPAVNQVECHPYLQQ--KKLVEFCKSKGIVVTAYSPLGSPGR-GS---- 217 (300)
T ss_pred HHHHHcCCceEeeeecCCHHHHHHHHhcCCCCCccceeeccCCcCh--HHHHHHHhhCCcEEEEecCCCCCCC-cc----
Confidence 9999999999999999999999999887 5789999999998875 5699999999999999999986541 00
Q ss_pred CCCCCcccccccCCcCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHhccCCCCCH
Q 019203 226 NVPADSFLHFLPRFKGENLDRNKSIYFRIGNLAKKYNCTSAQLALAWVLGQGDDVVPIPGTTKMKNLDDNIDSLRIKLTK 305 (344)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~aqlal~~~l~~~~v~~vi~G~~~~~~l~enl~a~~~~Lt~ 305 (344)
+ .---+.+.+||++|+.|++|++|||+++++. +|||.++++++++||++++++.||+
T Consensus 218 ~---------------------ll~~~~l~~iA~K~~kt~aQIlLrw~~q~g~--~vipKS~~~~Ri~eN~~vfdf~Lt~ 274 (300)
T KOG1577|consen 218 D---------------------LLEDPVLKEIAKKYNKTPAQILLRWALQRGV--SVIPKSSNPERIKENFKVFDFELTE 274 (300)
T ss_pred c---------------------cccCHHHHHHHHHhCCCHHHHHHHHHHhCCc--EEEeccCCHHHHHHHHhhccccCCH
Confidence 0 0111689999999999999999999999997 9999999999999999999999999
Q ss_pred HHHHHHHhhCCCCcc
Q 019203 306 EDLKEISDAVPIEEV 320 (344)
Q Consensus 306 ~~~~~i~~~~~~~~~ 320 (344)
+|++.|+......+.
T Consensus 275 ed~~~i~~~~~~~r~ 289 (300)
T KOG1577|consen 275 EDMKKLDSLNSNERY 289 (300)
T ss_pred HHHHHHhhcccccee
Confidence 999999988877653
No 13
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=3.3e-54 Score=396.39 Aligned_cols=270 Identities=18% Similarity=0.236 Sum_probs=229.6
Q ss_pred CccccccccccccCCCC-------CCCCCCHHHHHHHHHHHHHcCCCccccccccCCCcHHHHHHHHHhcCCCCCeEEEe
Q 019203 17 GLEVSKLGFGCMNLSGG-------YSSPVSEEDGITMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVAT 89 (344)
Q Consensus 17 g~~vs~lglG~~~~~~~-------~~~~~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~sE~~lg~~l~~~~r~~~~i~t 89 (344)
+++||+||||||++|+. |+. ++.+++.++|++|++.|||+||||+.||. ||+++|++|+...+.+++|+|
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~-~~~~ea~~~l~~A~~~Gin~~DTA~~YG~--SE~~lG~al~~~~~~~~~i~t 78 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGR-TPEAEARDILNIAARAGLSVLDASGLFGR--AETVLGQLIPRPVPFRVTLST 78 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCC-CCHHHHHHHHHHHHHcCCCEEecchhhhh--HHHHHhhhhccCCceEeeccc
Confidence 57899999999999863 343 58899999999999999999999999975 999999999853345788898
Q ss_pred ccCcCCCCCCccccCCChHHHHHHHHHHHhhcCCCceeEEEecCCCCC-CCH-HHHHHHHHHHHHcCcccEEecCCCCHH
Q 019203 90 KFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS-VPI-EETIGEMKKLVEEGKIKYIGLSEASPG 167 (344)
Q Consensus 90 K~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~-~~~-~e~~~~L~~l~~~G~ir~iGvs~~~~~ 167 (344)
|.. +.+++.+++++++||+|||+||||+|++|+|+.. .+. +++|++|++|+++||||+||||||+++
T Consensus 79 k~~-----------~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~ 147 (292)
T PRK14863 79 VRA-----------DRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAKIGVSAHASD 147 (292)
T ss_pred ccc-----------cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceEeeeccCHH
Confidence 842 2458899999999999999999999999999763 233 578999999999999999999999999
Q ss_pred HHHHHhhcCCcceeeccccccccchH-hhHHHHHHHhCCceeecccCcccccCCCCCCCCCCCCcccccccCCcCcchhh
Q 019203 168 TIRRAHAVHPITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSFLHFLPRFKGENLDR 246 (344)
Q Consensus 168 ~l~~~~~~~~~~~~q~~~n~l~~~~~-~~l~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (344)
++..+....+|+++|++||+++++.+ .+++++|+++||++++|+||++|+|++... ..+. .+..
T Consensus 148 ~~~~~~~~~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~~~~~--~~~~-------------~~~~ 212 (292)
T PRK14863 148 DPVGVARRFKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLFLPPD--RVPA-------------QLKG 212 (292)
T ss_pred HHHHHHhcCCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCccccCCcc--cCcc-------------chhh
Confidence 99888877899999999999998754 469999999999999999999999975310 0110 1122
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHhccCCCCCHHHHHHHHhhC
Q 019203 247 NKSIYFRIGNLAKKYNCTSAQLALAWVLGQGDDVVPIPGTTKMKNLDDNIDSLRIKLTKEDLKEISDAV 315 (344)
Q Consensus 247 ~~~~~~~l~~ia~~~~~s~aqlal~~~l~~~~v~~vi~G~~~~~~l~enl~a~~~~Lt~~~~~~i~~~~ 315 (344)
....+..+.+++.+.++|++|+||+|++++|.|+++|+|+++++||++|+++.+.++++..+++|.--.
T Consensus 213 ~~~~~~~~~~~~~~~~~s~aqlalaw~l~~p~v~~~I~G~~~~~ql~~n~~a~~~~~~~~~~~~l~~~~ 281 (292)
T PRK14863 213 ASGRLSRVRRMIAEGRSDPLQAALGFALSRPEGSAVLVGVNSAAELSAVVAAASSPPPDLDWDDMAIDD 281 (292)
T ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHHHhcCCCccchhhccCCh
Confidence 335567788888899999999999999999999999999999999999999999899998887775433
No 14
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=1.1e-53 Score=365.70 Aligned_cols=285 Identities=28% Similarity=0.421 Sum_probs=255.8
Q ss_pred CCceecCCCCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCccccccccCCCcHHHHHHHHHhc--CCCCCe
Q 019203 8 VPRVKLGTQGLEVSKLGFGCMNLSGGYSSPVSEEDGITMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ--LPREKI 85 (344)
Q Consensus 8 m~~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~sE~~lg~~l~~--~~r~~~ 85 (344)
|++.++|+.|+++|++.+|+|++.. |+. ...+....++.|++.|||+||.|+.||++.+|+++|.+|+- ..|+++
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d-~~~--~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~p~lReki 77 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLND-WNM--SARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLAPGLREKI 77 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhh-ccC--CHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcChhhhhhe
Confidence 7899999999999999999999976 543 56889999999999999999999999999999999999986 469999
Q ss_pred EEEeccCcCCCCC---CccccCCChHHHHHHHHHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEEecC
Q 019203 86 QVATKFGIAGIGV---AGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS 162 (344)
Q Consensus 86 ~i~tK~~~~~~~~---~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~iGvs 162 (344)
.|+||||...+.. .....+++.++|..++++||+||+|||+|+++||+||+..+.+|+.+++..|+++||||++|||
T Consensus 78 eivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd~eeVAeAf~~L~~sGKVr~fGVS 157 (298)
T COG4989 78 EIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMDAEEVAEAFTHLHKSGKVRHFGVS 157 (298)
T ss_pred EeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCCHHHHHHHHHHHHhcCCeeeeecC
Confidence 9999999876422 1235789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhhcC--Ccceeeccccccccch-HhhHHHHHHHhCCceeecccCcccccCCCCCCCCCCCCcccccccCC
Q 019203 163 EASPGTIRRAHAVH--PITAVQMEWSLWTRDI-EEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSFLHFLPRF 239 (344)
Q Consensus 163 ~~~~~~l~~~~~~~--~~~~~q~~~n~l~~~~-~~~l~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~~ 239 (344)
||++.+++-+.... +++.+|++.|+++... ..+.+++|+.+.|..++||||++|.+...
T Consensus 158 Nf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~g------------------ 219 (298)
T COG4989 158 NFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLG------------------ 219 (298)
T ss_pred CCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCccccC------------------
Confidence 99999997776663 4788999999998764 36799999999999999999998865321
Q ss_pred cCcchhhhHHHHHHHHHHHHHcC-CCHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHhccCCCCCHHHHHHHHhhCCC
Q 019203 240 KGENLDRNKSIYFRIGNLAKKYN-CTSAQLALAWVLGQGDDVVPIPGTTKMKNLDDNIDSLRIKLTKEDLKEISDAVPI 317 (344)
Q Consensus 240 ~~~~~~~~~~~~~~l~~ia~~~~-~s~aqlal~~~l~~~~v~~vi~G~~~~~~l~enl~a~~~~Lt~~~~~~i~~~~~~ 317 (344)
.+..+.....+..||.++| .|..+++++|++.+|.-..||+|+.+++++++.++|++..||.++|-+|......
T Consensus 220 ----~~~~q~l~~~l~~ia~e~ga~s~~~VaiAWllR~Pa~~~PiiGt~~~eRi~~a~~Al~~~LtRqqWf~Iy~Aa~G 294 (298)
T COG4989 220 ----DDKFQRLRKVLDRIAEEYGAVSITAVAIAWLLRHPAKPQPIIGTGNLERIRAAIKALSLTLTRQQWFEIYTAAIG 294 (298)
T ss_pred ----CcchHHHHHHHHHHHHHhCcccHHHHHHHHHHhCcCcccceecCCCHHHHHHHHHHhhccccHHHHHHHHHHhcc
Confidence 1334667789999999999 7999999999999999999999999999999999999999999999999887644
No 15
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=1.3e-51 Score=376.69 Aligned_cols=256 Identities=32% Similarity=0.427 Sum_probs=224.7
Q ss_pred CceecCCCCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCccccccccCCCcHHHHHHHHHhc--CCCCCeE
Q 019203 9 PRVKLGTQGLEVSKLGFGCMNLSGGYSSPVSEEDGITMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ--LPREKIQ 86 (344)
Q Consensus 9 ~~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~sE~~lg~~l~~--~~r~~~~ 86 (344)
++..| ++|++||.||||||++ +.+++.++|++|++.|+|+||||+.|| +|+.+|++|+. .+|++++
T Consensus 5 ~~~~l-~~g~~v~~lglG~~~~--------~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~R~~~~ 72 (275)
T PRK11565 5 TVIKL-QDGNVMPQLGLGVWQA--------SNEEVITAIHKALEVGYRSIDTAAIYK---NEEGVGKALKEASVAREELF 72 (275)
T ss_pred ceEEc-CCCCccCCcceECccC--------CHHHHHHHHHHHHHhCCCEEEchhhhC---CHHHHHHHHHHcCCCHHHEE
Confidence 34667 7999999999999964 457899999999999999999999998 69999999986 3589999
Q ss_pred EEeccCcCCCCCCccccCCChHHHHHHHHHHHhhcCCCceeEEEecCCCCCC-CHHHHHHHHHHHHHcCcccEEecCCCC
Q 019203 87 VATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSV-PIEETIGEMKKLVEEGKIKYIGLSEAS 165 (344)
Q Consensus 87 i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~-~~~e~~~~L~~l~~~G~ir~iGvs~~~ 165 (344)
|+||++. .+++.+++++++||++||+||||+|++|+|+... ...++|++|++|+++|+||+||||||+
T Consensus 73 i~tK~~~-----------~~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~ 141 (275)
T PRK11565 73 ITTKLWN-----------DDHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSIGVCNFQ 141 (275)
T ss_pred EEEEecC-----------cchHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCeeEEeeccCC
Confidence 9999852 2467899999999999999999999999998653 478999999999999999999999999
Q ss_pred HHHHHHHhhcC--CcceeeccccccccchHhhHHHHHHHhCCceeecccCcccccCCCCCCCCCCCCcccccccCCcCcc
Q 019203 166 PGTIRRAHAVH--PITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSFLHFLPRFKGEN 243 (344)
Q Consensus 166 ~~~l~~~~~~~--~~~~~q~~~n~l~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~ 243 (344)
++++++++... .+.++|++|+++.+. .+++++|+++||++++|+||++|.- + .+
T Consensus 142 ~~~l~~~~~~~~v~~~~~Q~~~~~~~~~--~~~~~~~~~~~i~~~a~spl~~G~~-~-----------------~~---- 197 (275)
T PRK11565 142 IHHLQRLIDETGVTPVINQIELHPLMQQ--RQLHAWNATHKIQTESWSPLAQGGK-G-----------------VF---- 197 (275)
T ss_pred HHHHHHHHHhCCCCceeeeeecCCccch--HHHHHHHHHCCCEEEEEccCCCCCc-c-----------------cc----
Confidence 99999887653 468899999998874 5799999999999999999997630 0 00
Q ss_pred hhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHhccCCCCCHHHHHHHHhhCCCCc
Q 019203 244 LDRNKSIYFRIGNLAKKYNCTSAQLALAWVLGQGDDVVPIPGTTKMKNLDDNIDSLRIKLTKEDLKEISDAVPIEE 319 (344)
Q Consensus 244 ~~~~~~~~~~l~~ia~~~~~s~aqlal~~~l~~~~v~~vi~G~~~~~~l~enl~a~~~~Lt~~~~~~i~~~~~~~~ 319 (344)
. .+.+.++|+++|+|++|+||+|+++++. +||+|+++++|+++|+++++++|+++++++|+++....+
T Consensus 198 -~-----~~~l~~ia~~~g~s~aq~aL~w~l~~~~--~~I~g~~~~~~i~~n~~a~~~~Ls~~~~~~i~~~~~~~~ 265 (275)
T PRK11565 198 -D-----QKVIRDLADKYGKTPAQIVIRWHLDSGL--VVIPKSVTPSRIAENFDVFDFRLDKDELGEIAKLDQGKR 265 (275)
T ss_pred -c-----CHHHHHHHHHhCCCHHHHHHHHHHcCCC--EeeCCCCCHHHHHHHHhccCCCcCHHHHHHHHhhcccCC
Confidence 0 1578999999999999999999999975 689999999999999999999999999999999986554
No 16
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=7e-52 Score=357.10 Aligned_cols=291 Identities=27% Similarity=0.415 Sum_probs=251.2
Q ss_pred CCCceecCCCCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCccccccccCCCcHHHHHHHHHhcCCCCCeE
Q 019203 7 QVPRVKLGTQGLEVSKLGFGCMNLSGGYSSPVSEEDGITMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQ 86 (344)
Q Consensus 7 ~m~~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~sE~~lg~~l~~~~r~~~~ 86 (344)
-|.||.+|+||++||+|+||+..++..|+.. +.++....+..|+++|||+|||++.||+++||..+|.++++.||+.+|
T Consensus 21 rmeyR~lg~tgl~VSk~~fGga~L~~~fgd~-~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~vPR~aYy 99 (342)
T KOG1576|consen 21 RMEYRQLGSTGLRVSKLGFGGAALGQLFGDE-DEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKDVPREAYY 99 (342)
T ss_pred HHHHhhcCCCcceeeeeeecchhhhhhcCCc-chhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhhCChhhee
Confidence 4889999999999999999999999888874 777777766779999999999999999999999999999999999999
Q ss_pred EEeccCcCCCCCCccccCCChHHHHHHHHHHHhhcCCCceeEEEecCCCCC----CCHHHHHHHHHHHHHcCcccEEecC
Q 019203 87 VATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS----VPIEETIGEMKKLVEEGKIKYIGLS 162 (344)
Q Consensus 87 i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~----~~~~e~~~~L~~l~~~G~ir~iGvs 162 (344)
|+||+|...-+. ....+++++.+++++++||+||++||+|++++|..+.. ..+.|++.+|++||++||||+||++
T Consensus 100 IaTKvgRy~ld~-~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~lk~~Gk~RfiGit 178 (342)
T KOG1576|consen 100 IATKVGRYELDY-ANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEELKQEGKIRFIGIT 178 (342)
T ss_pred eeeeeeecccCc-cccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHHHHHHhcCceeEeeec
Confidence 999999875332 33578999999999999999999999999999998654 3567999999999999999999999
Q ss_pred CCCHHHHHHHhhcC--Ccceee--ccccccccchHhhHHHHHHHhCCceeecccCcccccCCCCCCCCCCCCcccccccC
Q 019203 163 EASPGTIRRAHAVH--PITAVQ--MEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSFLHFLPR 238 (344)
Q Consensus 163 ~~~~~~l~~~~~~~--~~~~~q--~~~n~l~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~ 238 (344)
.++.+.+.+..+.. .++++- .+|++.+... ...+++.+..|++|++.++++.|+|+.+.+++..|.
T Consensus 179 gypldvl~~~ae~~~G~~dvvlsY~ry~l~d~tL-l~~~~~~~sk~vgVi~AsalsmgLLt~~gp~~wHPa--------- 248 (342)
T KOG1576|consen 179 GYPLDVLTECAERGKGRLDVVLSYCRYTLNDNTL-LRYLKRLKSKGVGVINASALSMGLLTNQGPPPWHPA--------- 248 (342)
T ss_pred ccchHHHHHHHhcCCCceeeehhhhhhccccHHH-HHHHHHHHhcCceEEehhhHHHHHhhcCCCCCCCCC---------
Confidence 99999999988773 466665 7888876543 578888899999999999999999997754444443
Q ss_pred CcCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHhccCCCCCHHHHHHHHhh
Q 019203 239 FKGENLDRNKSIYFRIGNLAKKYNCTSAQLALAWVLGQGDDVVPIPGTTKMKNLDDNIDSLRIKLTKEDLKEISDA 314 (344)
Q Consensus 239 ~~~~~~~~~~~~~~~l~~ia~~~~~s~aqlal~~~l~~~~v~~vi~G~~~~~~l~enl~a~~~~Lt~~~~~~i~~~ 314 (344)
.++..+......++|++.|+..+.+|+.|+++.++++++++|+++.++|+.|+++....||..+-.+...+
T Consensus 249 -----S~Elk~~a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~s~~~l~~nLdan~~~ls~~~~Qevl~~ 319 (342)
T KOG1576|consen 249 -----SDELKEAAKAAAEYCQSRNVELGKLAMYYAMSLPGVSTVLVGMSSRQLLRINLDANFDRLSSKHEQEVLRI 319 (342)
T ss_pred -----CHHHHHHHHHHHHHHHHcCccHHHHHHHHHHccCCcceEEecCchHHHHHHHHHhhhccccchhHHHHHHH
Confidence 35667777888999999999999999999999999999999999999999999987678887443333333
No 17
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=2.8e-50 Score=363.06 Aligned_cols=271 Identities=28% Similarity=0.396 Sum_probs=243.0
Q ss_pred CCceecCCCCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCccccccccCCCcHHHHHHHHHhcCCCCCeEE
Q 019203 8 VPRVKLGTQGLEVSKLGFGCMNLSGGYSSPVSEEDGITMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQV 87 (344)
Q Consensus 8 m~~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~sE~~lg~~l~~~~r~~~~i 87 (344)
|.||++|+||.++|.||||||++...|...+|.+.+.++|++|+++|||+||||..|..|.||..+|++|++..|++|++
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~Rekv~L 80 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGYREKVKL 80 (391)
T ss_pred CchhhcCCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhcccceEEE
Confidence 88999999999999999999999876655569999999999999999999999999988889999999999988999999
Q ss_pred EeccCcCCCCCCccccCCChHHHHHHHHHHHhhcCCCceeEEEecCCCCCCCHH-----HHHHHHHHHHHcCcccEEecC
Q 019203 88 ATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIE-----ETIGEMKKLVEEGKIKYIGLS 162 (344)
Q Consensus 88 ~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~-----e~~~~L~~l~~~G~ir~iGvs 162 (344)
+||+...+. -+.+.+++-++++|++||+||+|+|+||..+.. .++ +.+++++++|++|+||++|+|
T Consensus 81 aTKlp~~~~--------~~~edm~r~fneqLekl~~Dy~D~yliH~l~~e-~~~k~~~~g~~df~~kak~eGkIr~~GFS 151 (391)
T COG1453 81 ATKLPSWPV--------KDREDMERIFNEQLEKLGTDYIDYYLIHGLNTE-TWEKIERLGVFDFLEKAKAEGKIRNAGFS 151 (391)
T ss_pred EeecCCccc--------cCHHHHHHHHHHHHHHhCCchhhhhhhccccHH-HHHHHHccChHHHHHHHHhcCcEEEeeec
Confidence 999976543 468899999999999999999999999999873 343 469999999999999999999
Q ss_pred CC-CHHHHHHHhhcCCcceeeccccccccchH--hhHHHHHHHhCCceeecccCcccccCCCCCCCCCCCCcccccccCC
Q 019203 163 EA-SPGTIRRAHAVHPITAVQMEWSLWTRDIE--EEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSFLHFLPRF 239 (344)
Q Consensus 163 ~~-~~~~l~~~~~~~~~~~~q~~~n~l~~~~~--~~l~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~~ 239 (344)
.| +++.+.+++...+++++|++||.+++... .+.+++|.++|++|+.++|+.+|-|..+ +|
T Consensus 152 fHgs~e~~~~iv~a~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~~-----vP----------- 215 (391)
T COG1453 152 FHGSTEVFKEIVDAYPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYN-----VP----------- 215 (391)
T ss_pred CCCCHHHHHHHHhcCCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcccC-----CC-----------
Confidence 99 56889999999999999999999998654 3889999999999999999999987532 11
Q ss_pred cCcchhhhHHHHHHHHHHHHHcC--CCHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHhccCC--C-CCHHHHHHHHhh
Q 019203 240 KGENLDRNKSIYFRIGNLAKKYN--CTSAQLALAWVLGQGDDVVPIPGTTKMKNLDDNIDSLRI--K-LTKEDLKEISDA 314 (344)
Q Consensus 240 ~~~~~~~~~~~~~~l~~ia~~~~--~s~aqlal~~~l~~~~v~~vi~G~~~~~~l~enl~a~~~--~-Lt~~~~~~i~~~ 314 (344)
+++.+|+++++ .||+..|+||++++|.|++|+.|+++++||+||++.++. | ||++|+..|.++
T Consensus 216 ------------~~~~~l~~~~~~~~sP~~wa~R~~~shp~V~~vlsGm~~~~~l~enLk~~~~~~p~lte~e~~il~~v 283 (391)
T COG1453 216 ------------EKLEELCRPASPKRSPAEWALRYLLSHPEVTTVLSGMNTPEQLEENLKIASELEPSLTEEELQILEKV 283 (391)
T ss_pred ------------HHHHHHHHhcCCCCCcHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHHHhhcCCccCHHHHHHHHHH
Confidence 67888998886 589999999999999999999999999999999987764 4 999998888776
Q ss_pred C
Q 019203 315 V 315 (344)
Q Consensus 315 ~ 315 (344)
-
T Consensus 284 ~ 284 (391)
T COG1453 284 E 284 (391)
T ss_pred H
Confidence 4
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=97.75 E-value=6.8e-05 Score=65.16 Aligned_cols=73 Identities=16% Similarity=0.181 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhcC--CcceeeccccccccchHhhHHHHHHHhCCceeecccC
Q 019203 140 IEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVH--PITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPL 213 (344)
Q Consensus 140 ~~e~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~--~~~~~q~~~n~l~~~~~~~l~~~~~~~gi~v~a~spl 213 (344)
+.++|+.|++++.+|+|..||+|.++..+|++++... .|.++|+...--..-+ .++..||.++.|.+..++--
T Consensus 155 lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvP-pdLqafa~~hdiQLltHsDP 229 (285)
T KOG3023|consen 155 LKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVP-PDLQAFADRHDIQLLTHSDP 229 (285)
T ss_pred HHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccCC-HHHHHHhhhcceeeeecCCc
Confidence 4578999999999999999999999999999999884 4666777655433322 68999999999998876544
No 19
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=93.78 E-value=2.7 Score=39.04 Aligned_cols=155 Identities=12% Similarity=0.095 Sum_probs=96.9
Q ss_pred CHHHHHHHHHHHHHcCCCccccccccCCC--cHHHHHHHHHhcCCCCCeEEEeccCcCCCCCCccccCCChHHHHHHHHH
Q 019203 39 SEEDGITMIKHAFSKGITFFDTADVYGQN--ANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEA 116 (344)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g--~sE~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (344)
+.++..+.++.+.+.|++.|+.-- |.. ...+.+. ++++.-. ++-|.-++.. .++.+.. ..+-+
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~--g~~~~~d~~~v~-~lr~~~g-~~~l~vD~n~----------~~~~~~A-~~~~~ 198 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKL--GGDLEDDIERIR-AIREAAP-DARLRVDANQ----------GWTPEEA-VELLR 198 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEe--CCChhhHHHHHH-HHHHhCC-CCeEEEeCCC----------CcCHHHH-HHHHH
Confidence 567777888888999999999742 321 1122232 3333222 6667766532 2444433 33334
Q ss_pred HHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCccc-EEecCCCCHHHHHHHhhcCCcceeecccccccc-chHh
Q 019203 117 SLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTR-DIEE 194 (344)
Q Consensus 117 sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~l~~-~~~~ 194 (344)
.|+.++++++ -.|-.. +-++.+.+|.+...|. ..|=+-++.+.+.++++....+++|+.-+..-. ....
T Consensus 199 ~l~~~~l~~i-----EeP~~~----~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~~~~ 269 (316)
T cd03319 199 ELAELGVELI-----EQPVPA----GDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYDGINIKLMKTGGLTEAL 269 (316)
T ss_pred HHHhcCCCEE-----ECCCCC----CCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEeccccCCHHHHH
Confidence 5566654444 333322 3466777888877776 334455688999999998889999997666432 1226
Q ss_pred hHHHHHHHhCCceeecccCcccc
Q 019203 195 EIIPLCRELGIGIVPYSPLGRGF 217 (344)
Q Consensus 195 ~l~~~~~~~gi~v~a~spl~~G~ 217 (344)
.+..+|+++|+.++..+-+..++
T Consensus 270 ~~~~~a~~~gi~~~~~~~~~~~i 292 (316)
T cd03319 270 RIADLARAAGLKVMVGCMVESSL 292 (316)
T ss_pred HHHHHHHHcCCCEEEECchhhHH
Confidence 78999999999999876654433
No 20
>PRK08392 hypothetical protein; Provisional
Probab=91.57 E-value=8.4 Score=33.65 Aligned_cols=150 Identities=17% Similarity=0.126 Sum_probs=75.3
Q ss_pred HHHHHHHHHHcCCCccccccccCC---CcHHHHHHHHHhcCCCCCeEEEeccCcCCCCCCccccCCChHHHHHHHHHHHh
Q 019203 43 GITMIKHAFSKGITFFDTADVYGQ---NANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLK 119 (344)
Q Consensus 43 ~~~~l~~A~~~Gin~~Dta~~Yg~---g~sE~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 119 (344)
..+.++.|.+.|++.+=.++|.-. ..-+..+.+.-+-..+.++ .-..|.-.. ..++. ....++.++
T Consensus 16 ~~e~v~~A~~~Gl~~i~iTdH~~~~~~~~~~~y~~~i~~l~~~~~i--~il~GiE~~--------~~~~~-~~~~~~~~~ 84 (215)
T PRK08392 16 VRDNIAEAERKGLRLVGISDHIHYFTPSKFNAYINEIRQWGEESEI--VVLAGIEAN--------ITPNG-VDITDDFAK 84 (215)
T ss_pred HHHHHHHHHHcCCCEEEEccCCCccchhhHHHHHHHHHHHhhccCc--eEEEeEEee--------ecCCc-chhHHHHHh
Confidence 578999999999998866665421 1112222222111112233 223332211 11111 123334455
Q ss_pred hcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEEecCCC-------C-HHHHHHHhhc---CCcceeecccccc
Q 019203 120 RLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA-------S-PGTIRRAHAV---HPITAVQMEWSLW 188 (344)
Q Consensus 120 ~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~iGvs~~-------~-~~~l~~~~~~---~~~~~~q~~~n~l 188 (344)
. .||+ +.-+|.+......++..+.+.++.+.+.+.-+|=-.. . .+.+.++++. .. +.++.|-.
T Consensus 85 ~--~D~v-I~SvH~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g---~~lEiNt~ 158 (215)
T PRK08392 85 K--LDYV-IASVHEWFGRPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYG---KAFEISSR 158 (215)
T ss_pred h--CCEE-EEEeecCcCCcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhC---CEEEEeCC
Confidence 3 4776 7788954333345677788888888898776664221 1 1233332222 22 11222222
Q ss_pred ccchHhhHHHHHHHhCCceee
Q 019203 189 TRDIEEEIIPLCRELGIGIVP 209 (344)
Q Consensus 189 ~~~~~~~l~~~~~~~gi~v~a 209 (344)
.+.+...+++.|++.|+.++.
T Consensus 159 ~~~p~~~~l~~~~~~G~~~~i 179 (215)
T PRK08392 159 YRVPDLEFIRECIKRGIKLTF 179 (215)
T ss_pred CCCCCHHHHHHHHHcCCEEEE
Confidence 222335688899999876543
No 21
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=91.56 E-value=3.1 Score=37.33 Aligned_cols=106 Identities=17% Similarity=0.129 Sum_probs=70.7
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcC-cccEEecCCCCHHHHHHHhhcCCcceee
Q 019203 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG-KIKYIGLSEASPGTIRRAHAVHPITAVQ 182 (344)
Q Consensus 104 ~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G-~ir~iGvs~~~~~~l~~~~~~~~~~~~q 182 (344)
.++.+...+-++ .|..+|+++|.+-..-.+...-...+.++.++.+.+.+ .++...++.-..+.++.+.+. .++.++
T Consensus 15 ~~s~e~~~~i~~-~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~-g~~~i~ 92 (265)
T cd03174 15 TFSTEDKLEIAE-ALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEA-GVDEVR 92 (265)
T ss_pred CCCHHHHHHHHH-HHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhC-CcCEEE
Confidence 456776666555 58889999998887665533322356788888999888 577767766556666666664 356666
Q ss_pred ccccccc--------cc------hHhhHHHHHHHhCCceeecc
Q 019203 183 MEWSLWT--------RD------IEEEIIPLCRELGIGIVPYS 211 (344)
Q Consensus 183 ~~~n~l~--------~~------~~~~l~~~~~~~gi~v~a~s 211 (344)
+.+..-+ +. .-...++++++.|+.+...-
T Consensus 93 i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 93 IFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 6655431 11 11577888999998876644
No 22
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=85.71 E-value=27 Score=31.48 Aligned_cols=156 Identities=13% Similarity=0.153 Sum_probs=94.1
Q ss_pred CHHHHHHHHHHHHHcCCCccccccccCCCcHHHHH--HHHHhcCCCCCeEEEeccCcCCCCCCccccCCChHHHHHHHHH
Q 019203 39 SEEDGITMIKHAFSKGITFFDTADVYGQNANEVLL--GKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEA 116 (344)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~sE~~l--g~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (344)
+.++..+.++.+.+.|++.|-.-- |.. .++.+ =+++++.-.+++.|.-... ..++.+...+-+ +
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKv--g~~-~~~d~~~v~~vr~~~g~~~~l~vDan----------~~~~~~~a~~~~-~ 150 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKV--GRD-PARDVAVVAALREAVGDDAELRVDAN----------RGWTPKQAIRAL-R 150 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEec--CCC-HHHHHHHHHHHHHhcCCCCEEEEeCC----------CCcCHHHHHHHH-H
Confidence 456667778888899999887532 211 22222 2333432234555544431 124554443333 3
Q ss_pred HHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCccc-EEecCCCCHHHHHHHhhcCCcceeecccccccc-chHh
Q 019203 117 SLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTR-DIEE 194 (344)
Q Consensus 117 sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~l~~-~~~~ 194 (344)
.|+.+++ .++..|-.. +.++.+.+|++.-.+. ..|=+-++.+.+.++++...++++|+..+..-. ....
T Consensus 151 ~l~~~~i-----~~iEeP~~~----~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~ 221 (265)
T cd03315 151 ALEDLGL-----DYVEQPLPA----DDLEGRAALARATDTPIMADESAFTPHDAFRELALGAADAVNIKTAKTGGLTKAQ 221 (265)
T ss_pred HHHhcCC-----CEEECCCCc----ccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCEEEEecccccCHHHHH
Confidence 4455554 444555432 2356677777776665 334455688899999888889999998776443 1226
Q ss_pred hHHHHHHHhCCceeecccCcccc
Q 019203 195 EIIPLCRELGIGIVPYSPLGRGF 217 (344)
Q Consensus 195 ~l~~~~~~~gi~v~a~spl~~G~ 217 (344)
.+...|+++|+.++..+.+..++
T Consensus 222 ~~~~~A~~~gi~~~~~~~~~s~i 244 (265)
T cd03315 222 RVLAVAEALGLPVMVGSMIESGL 244 (265)
T ss_pred HHHHHHHHcCCcEEecCccchHH
Confidence 78999999999999887665443
No 23
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=84.88 E-value=24 Score=32.88 Aligned_cols=134 Identities=11% Similarity=-0.004 Sum_probs=86.5
Q ss_pred CHHHHHHHHHHHHHcCCCcccc---cc-----ccCCC----cHHHHHHHHHhcC---CCCCeEEEeccCcCCCCCCcccc
Q 019203 39 SEEDGITMIKHAFSKGITFFDT---AD-----VYGQN----ANEVLLGKALKQL---PREKIQVATKFGIAGIGVAGVIV 103 (344)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dt---a~-----~Yg~g----~sE~~lg~~l~~~---~r~~~~i~tK~~~~~~~~~~~~~ 103 (344)
+.++..+....+.+.|+..+|- ++ .||.| ..-+.+.+.++.. -..++-|+.|......
T Consensus 73 ~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~------- 145 (312)
T PRK10550 73 YPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWD------- 145 (312)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCC-------
Confidence 6677777777888899999993 33 36655 2345555555542 1225778888754321
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEecCCCCCCCHHH---HHHHHHHHHHcCcccEEecCCC-CHHHHHHHhhcCCcc
Q 019203 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEE---TIGEMKKLVEEGKIKYIGLSEA-SPGTIRRAHAVHPIT 179 (344)
Q Consensus 104 ~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~e---~~~~L~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~ 179 (344)
+.+.. ..+-+.|+..| +|.+.+|.-........ -|+...++++.-.|--||..+. +++.+.++++....+
T Consensus 146 --~~~~~-~~~a~~l~~~G---vd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~D 219 (312)
T PRK10550 146 --SGERK-FEIADAVQQAG---ATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCD 219 (312)
T ss_pred --CchHH-HHHHHHHHhcC---CCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCC
Confidence 11222 34455677777 57778886543322111 3788888888878888888875 888898988888888
Q ss_pred eeeccc
Q 019203 180 AVQMEW 185 (344)
Q Consensus 180 ~~q~~~ 185 (344)
.+++-=
T Consensus 220 gVmiGR 225 (312)
T PRK10550 220 AVMIGR 225 (312)
T ss_pred EEEEcH
Confidence 887743
No 24
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=84.39 E-value=20 Score=30.90 Aligned_cols=145 Identities=12% Similarity=0.008 Sum_probs=86.7
Q ss_pred CHHHHHHHHHHHHHcCCCccccccccCCCcHHHHHHHHHhc----CCCCCeEEEeccCcCCCCCCccccCCChHHHHHHH
Q 019203 39 SEEDGITMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ----LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCC 114 (344)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~sE~~lg~~l~~----~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~ 114 (344)
|.+++.++++.+++.|++..|.- +.++..+++. -.+.+++++-= .+..+.++..+
T Consensus 10 d~~~~~~~v~~~l~~g~~~~~i~--------~~~l~p~m~~iG~~w~~gei~va~~-------------~~a~~~~~~~l 68 (197)
T TIGR02370 10 EEDDVVEGAQKALDAGIDPIELI--------EKGLMAGMGVVGKLFEDGELFLPHV-------------MMSADAMLAGI 68 (197)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHH--------HHHHHHHHHHHHHHHcCCCccHHHH-------------HHHHHHHHHHH
Confidence 78899999999999999888863 3444444443 12445544221 13344556666
Q ss_pred HHHHhhcCCC----ceeEEEecCCCCCCCHHHHHHHHHHHHHcCc-ccEEecCCCCHHHHHHHhhcCCcceeeccccccc
Q 019203 115 EASLKRLDVD----YIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWT 189 (344)
Q Consensus 115 ~~sL~~Lg~d----~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~l~ 189 (344)
+.....+... .---+++-.+..+..--...=.-.-|...|. +.++|... +++.+.+.+....++++.+.+....
T Consensus 69 ~~l~~~~~~~~~~~~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~v-p~e~~v~~~~~~~pd~v~lS~~~~~ 147 (197)
T TIGR02370 69 KVLTPEMEKAVETEVLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDV-PIDTVVEKVKKEKPLMLTGSALMTT 147 (197)
T ss_pred HHHHHHhhccccCCCCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCC-CHHHHHHHHHHcCCCEEEEcccccc
Confidence 5555555421 1112333333333222222223334455664 77788644 7888888888888999988887655
Q ss_pred cchH-hhHHHHHHHhCC
Q 019203 190 RDIE-EEIIPLCRELGI 205 (344)
Q Consensus 190 ~~~~-~~l~~~~~~~gi 205 (344)
.-.. .++++.+++.|+
T Consensus 148 ~~~~~~~~i~~l~~~~~ 164 (197)
T TIGR02370 148 TMYGQKDINDKLKEEGY 164 (197)
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 4332 678888888854
No 25
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=84.06 E-value=3.7 Score=35.78 Aligned_cols=68 Identities=13% Similarity=0.154 Sum_probs=48.9
Q ss_pred HHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEEecC-CCCHHHHHHHhhcCCcceeecccc
Q 019203 117 SLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPGTIRRAHAVHPITAVQMEWS 186 (344)
Q Consensus 117 sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~n 186 (344)
....+|+|++-+.+........+.+.+-+....+ .+.++.+||. |.+++.+.++.+..+++++|++-+
T Consensus 16 ~~~~~GaD~iGfIf~~~SpR~V~~~~a~~i~~~~--~~~~~~VgVf~~~~~~~i~~~~~~~~~d~vQLHG~ 84 (207)
T PRK13958 16 AASQLPIDAIGFIHYEKSKRHQTITQIKKLASAV--PNHIDKVCVVVNPDLTTIEHILSNTSINTIQLHGT 84 (207)
T ss_pred HHHHcCCCEEEEecCCCCcccCCHHHHHHHHHhC--CCCCCEEEEEeCCCHHHHHHHHHhCCCCEEEECCC
Confidence 4566999999997544433444555443333333 3568899996 778999999999999999999754
No 26
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=82.88 E-value=34 Score=30.99 Aligned_cols=137 Identities=12% Similarity=0.162 Sum_probs=79.9
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhcCCcceeecc
Q 019203 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAVQME 184 (344)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~ 184 (344)
.+.+.+.+...+. ..-|.|+||+-.= +......+.+...++.+++.-.+ -|-+-++.++.++++++..+=..+...
T Consensus 22 ~d~~~i~~~A~~~-~~~GAdiIDVg~~--~~~~eE~~r~~~~v~~l~~~~~~-plsIDT~~~~v~eaaL~~~~G~~iINs 97 (261)
T PRK07535 22 KDAAFIQKLALKQ-AEAGADYLDVNAG--TAVEEEPETMEWLVETVQEVVDV-PLCIDSPNPAAIEAGLKVAKGPPLINS 97 (261)
T ss_pred CCHHHHHHHHHHH-HHCCCCEEEECCC--CCchhHHHHHHHHHHHHHHhCCC-CEEEeCCCHHHHHHHHHhCCCCCEEEe
Confidence 4555566665544 3679999999853 22222234455566666554222 378888999999999987211123333
Q ss_pred ccccccchHhhHHHHHHHhCCceeecccCcccccCCCCCCCCCCCCcccccccCCcCcchhhhHHHHHHHHHHHHHcCCC
Q 019203 185 WSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSFLHFLPRFKGENLDRNKSIYFRIGNLAKKYNCT 264 (344)
Q Consensus 185 ~n~l~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s 264 (344)
.+....+ ...+++.+++.|..++...--..|. | ...+........+.+.+.++|++
T Consensus 98 Is~~~~~-~~~~~~l~~~~g~~vv~m~~~~~g~----------P-------------~t~~~~~~~l~~~v~~a~~~GI~ 153 (261)
T PRK07535 98 VSAEGEK-LEVVLPLVKKYNAPVVALTMDDTGI----------P-------------KDAEDRLAVAKELVEKADEYGIP 153 (261)
T ss_pred CCCCCcc-CHHHHHHHHHhCCCEEEEecCCCCC----------C-------------CCHHHHHHHHHHHHHHHHHcCCC
Confidence 3332211 2468999999999998754332332 1 01223345556666777788886
Q ss_pred HHHHH
Q 019203 265 SAQLA 269 (344)
Q Consensus 265 ~aqla 269 (344)
+.++.
T Consensus 154 ~~~Ii 158 (261)
T PRK07535 154 PEDIY 158 (261)
T ss_pred HhHEE
Confidence 66543
No 27
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=81.93 E-value=46 Score=31.33 Aligned_cols=153 Identities=12% Similarity=0.125 Sum_probs=90.8
Q ss_pred CHHHHHHHHHHHHHcCCCcccccc--ccCC----CcHHHHHHHHHhcCCCCCeEEEeccCcCCCCCCccccCCChHHHHH
Q 019203 39 SEEDGITMIKHAFSKGITFFDTAD--VYGQ----NANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRS 112 (344)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~--~Yg~----g~sE~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~ 112 (344)
+.++..+..+.+.+.|++.|-.-- .|.. -...+.+ +++++.-.+++.|..... ..++.+...+
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v-~~ir~~~g~~~~l~vDaN----------~~~~~~~a~~ 207 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARV-RAVREAVGPDVDLMVDAN----------GRWDLAEAIR 207 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHH-HHHHHhhCCCCEEEEECC----------CCCCHHHHHH
Confidence 456677788888899999887522 2210 0012222 233332234555555542 1245544432
Q ss_pred HHHHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCccc-EEecCCCCHHHHHHHhhcCCcceeecccccccc-
Q 019203 113 CCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTR- 190 (344)
Q Consensus 113 ~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~l~~- 190 (344)
-++ .|+.+ ++.++..|-.. +.++.+.+|++.-.+. ..|=+-++++.+.++++...++++|+.....-.
T Consensus 208 ~~~-~l~~~-----~i~~iEqP~~~----~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi 277 (357)
T cd03316 208 LAR-ALEEY-----DLFWFEEPVPP----DDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKVGGI 277 (357)
T ss_pred HHH-HhCcc-----CCCeEcCCCCc----cCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCCCEEecCccccCCH
Confidence 222 23333 44556665433 2466677788776665 333345688999999988889999997665432
Q ss_pred chHhhHHHHHHHhCCceeeccc
Q 019203 191 DIEEEIIPLCRELGIGIVPYSP 212 (344)
Q Consensus 191 ~~~~~l~~~~~~~gi~v~a~sp 212 (344)
.....+...|+++|+.++..+.
T Consensus 278 ~~~~~i~~~a~~~g~~~~~~~~ 299 (357)
T cd03316 278 TEAKKIAALAEAHGVRVAPHGA 299 (357)
T ss_pred HHHHHHHHHHHHcCCeEeccCC
Confidence 1126799999999999887664
No 28
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=81.90 E-value=7.3 Score=37.38 Aligned_cols=83 Identities=13% Similarity=0.154 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHHcCCCccccccccCCCcHHHHHHHHHhcCCCCCeEEEeccCcCCCCCCccccCCChHHHHHHHHHHH
Q 019203 39 SEEDGITMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASL 118 (344)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~sE~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL 118 (344)
+......++++|++.|++++|||.+.-. ..-+.... .+..+.+..-+|..++ .+--.....+++--
T Consensus 77 p~~~~~~i~ka~i~~gv~yvDts~~~~~---~~~~~~~a---~~Agit~v~~~G~dPG--------i~nv~a~~a~~~~~ 142 (389)
T COG1748 77 PPFVDLTILKACIKTGVDYVDTSYYEEP---PWKLDEEA---KKAGITAVLGCGFDPG--------ITNVLAAYAAKELF 142 (389)
T ss_pred CchhhHHHHHHHHHhCCCEEEcccCCch---hhhhhHHH---HHcCeEEEcccCcCcc--------hHHHHHHHHHHHhh
Confidence 4455669999999999999999976652 22222222 3567778888876542 33333333333333
Q ss_pred hhcCCCceeEEEecCCCCC
Q 019203 119 KRLDVDYIDLYYQHRVDTS 137 (344)
Q Consensus 119 ~~Lg~d~iDl~~lh~~~~~ 137 (344)
+ .+++||+|..+.|+..
T Consensus 143 ~--~i~si~iy~g~~g~~~ 159 (389)
T COG1748 143 D--EIESIDIYVGGLGEHG 159 (389)
T ss_pred c--cccEEEEEEecCCCCC
Confidence 3 5799999999999776
No 29
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=80.52 E-value=46 Score=30.45 Aligned_cols=152 Identities=13% Similarity=0.110 Sum_probs=92.1
Q ss_pred CHHHHHHHHHHHHHcCCCcccc---cc-------ccCCCcHHHHHHHHHhcCCCC-CeEEEeccCcCCCCCCccccCCCh
Q 019203 39 SEEDGITMIKHAFSKGITFFDT---AD-------VYGQNANEVLLGKALKQLPRE-KIQVATKFGIAGIGVAGVIVKGAP 107 (344)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dt---a~-------~Yg~g~sE~~lg~~l~~~~r~-~~~i~tK~~~~~~~~~~~~~~~~~ 107 (344)
+.++..+..+.+.+.|+..||. ++ .|+. +.+.+.+.++..++. ++-|..|+.+..
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~--~~~~~~eiv~~vr~~~~~Pv~vKl~~~~------------ 165 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGT--DPEAVAEIVKAVKKATDVPVIVKLTPNV------------ 165 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccC--CHHHHHHHHHHHHhccCCCEEEEeCCCc------------
Confidence 5677778888888889998886 22 2332 567777777653332 677889975321
Q ss_pred HHHHHHHHHHHhhcCCCceeEEE------ecCCCCC-------------CCHHHHHHHHHHHHHcCcccEEecCCC-CHH
Q 019203 108 DYVRSCCEASLKRLDVDYIDLYY------QHRVDTS-------------VPIEETIGEMKKLVEEGKIKYIGLSEA-SPG 167 (344)
Q Consensus 108 ~~i~~~~~~sL~~Lg~d~iDl~~------lh~~~~~-------------~~~~e~~~~L~~l~~~G~ir~iGvs~~-~~~ 167 (344)
+.+. .+-+.+...|+|.|++.- +|.-... ....-.++.+.++++.=.+.-||+... +++
T Consensus 166 ~~~~-~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~ 244 (296)
T cd04740 166 TDIV-EIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGE 244 (296)
T ss_pred hhHH-HHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHH
Confidence 1222 223457788988776641 1110000 001124677777777667889999886 788
Q ss_pred HHHHHhhcCCcceeeccccccc-cc----hHhhHHHHHHHhCCc
Q 019203 168 TIRRAHAVHPITAVQMEWSLWT-RD----IEEEIIPLCRELGIG 206 (344)
Q Consensus 168 ~l~~~~~~~~~~~~q~~~n~l~-~~----~~~~l~~~~~~~gi~ 206 (344)
.+.+++... .+.+|+-=-++. +. ...++.++.+++|..
T Consensus 245 da~~~l~~G-Ad~V~igra~l~~p~~~~~i~~~l~~~~~~~g~~ 287 (296)
T cd04740 245 DALEFLMAG-ASAVQVGTANFVDPEAFKEIIEGLEAYLDEEGIK 287 (296)
T ss_pred HHHHHHHcC-CCEEEEchhhhcChHHHHHHHHHHHHHHHHcCCC
Confidence 888888754 677776433322 11 225666777777643
No 30
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=79.51 E-value=14 Score=32.33 Aligned_cols=84 Identities=19% Similarity=0.260 Sum_probs=55.4
Q ss_pred HHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCc-ccEEecC-CCCHHHHHHHhhcCCcceeeccccccccchHh
Q 019203 117 SLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLS-EASPGTIRRAHAVHPITAVQMEWSLWTRDIEE 194 (344)
Q Consensus 117 sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~-ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~n~l~~~~~~ 194 (344)
....+|.||+-+++.-........+.+- ++.+.-. ++.+||. |.+.+.+.++++..+++.+|++-.. ..
T Consensus 17 ~a~~~gad~iG~If~~~SpR~Vs~~~a~----~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~~ld~VQlHG~e-----~~ 87 (208)
T COG0135 17 AAAKAGADYIGFIFVPKSPRYVSPEQAR----EIASAVPKVKVVGVFVNESIEEILEIAEELGLDAVQLHGDE-----DP 87 (208)
T ss_pred HHHHcCCCEEEEEEcCCCCCcCCHHHHH----HHHHhCCCCCEEEEECCCCHHHHHHHHHhcCCCEEEECCCC-----CH
Confidence 3456899998877766433344444333 3333332 8899996 6688999999999999999997663 23
Q ss_pred hHHHHHHHh-CCceee
Q 019203 195 EIIPLCREL-GIGIVP 209 (344)
Q Consensus 195 ~l~~~~~~~-gi~v~a 209 (344)
+.++..++. ++.|+-
T Consensus 88 ~~~~~l~~~~~~~v~k 103 (208)
T COG0135 88 EYIDQLKEELGVPVIK 103 (208)
T ss_pred HHHHHHHhhcCCceEE
Confidence 455555655 366554
No 31
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=78.95 E-value=6.5 Score=34.34 Aligned_cols=69 Identities=19% Similarity=0.197 Sum_probs=47.7
Q ss_pred HHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEEecC-CCCHHHHHHHhhcCCcceeeccccc
Q 019203 117 SLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPGTIRRAHAVHPITAVQMEWSL 187 (344)
Q Consensus 117 sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~n~ 187 (344)
-+..+|+|++-+.+..........+.+-+....+ .+.++.+||. +.+++.+.++++...++++|++-+.
T Consensus 18 ~~~~~Gad~iGfI~~~~S~R~V~~~~a~~i~~~~--~~~i~~VgVf~~~~~~~i~~~~~~~~~d~vQLHg~e 87 (210)
T PRK01222 18 AAAELGADAIGFVFYPKSPRYVSPEQAAELAAAL--PPFVKVVGVFVNASDEEIDEIVETVPLDLLQLHGDE 87 (210)
T ss_pred HHHHcCCCEEEEccCCCCCCcCCHHHHHHHHHhC--CCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCCC
Confidence 3456999999997544333334444433333333 3568999997 6688999999999999999997643
No 32
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=77.45 E-value=57 Score=30.86 Aligned_cols=97 Identities=16% Similarity=0.084 Sum_probs=54.7
Q ss_pred CCCeEEEeccCcCCCCCCccccCCChHHHHHHHHHHHhhcCCCceeEE-EecC-CCCC----CCHHHHHHHHHHHHHcCc
Q 019203 82 REKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLY-YQHR-VDTS----VPIEETIGEMKKLVEEGK 155 (344)
Q Consensus 82 r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~-~lh~-~~~~----~~~~e~~~~L~~l~~~G~ 155 (344)
..++.|..|++..... ....+.+... .+=+-|+.+|+|+|++- -.|. +... .+-........++++.=.
T Consensus 202 G~d~~v~iRi~~~D~~----~~g~~~~e~~-~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~ 276 (353)
T cd02930 202 GEDFIIIYRLSMLDLV----EGGSTWEEVV-ALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVD 276 (353)
T ss_pred CCCceEEEEecccccC----CCCCCHHHHH-HHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCC
Confidence 4577788887653211 1123444443 33345788888888872 2232 1111 111112344566666666
Q ss_pred ccEEecCCC-CHHHHHHHhhcCCcceeec
Q 019203 156 IKYIGLSEA-SPGTIRRAHAVHPITAVQM 183 (344)
Q Consensus 156 ir~iGvs~~-~~~~l~~~~~~~~~~~~q~ 183 (344)
+--++.-.. +++.++++++....+.+++
T Consensus 277 iPVi~~G~i~~~~~a~~~i~~g~~D~V~~ 305 (353)
T cd02930 277 IPVIASNRINTPEVAERLLADGDADMVSM 305 (353)
T ss_pred CCEEEcCCCCCHHHHHHHHHCCCCChhHh
Confidence 776766554 7788888888777777766
No 33
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=77.37 E-value=55 Score=29.52 Aligned_cols=101 Identities=20% Similarity=0.170 Sum_probs=64.1
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEE-ecCCCCC-CCHHH----HHHHHHHHHHcCcccEEecCCCCHHHHHHHhhcCCc
Q 019203 105 GAPDYVRSCCEASLKRLDVDYIDLYY-QHRVDTS-VPIEE----TIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPI 178 (344)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~d~iDl~~-lh~~~~~-~~~~e----~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 178 (344)
++.+.+.+.+++.+ .-|.|+||+-. --+|... .+.++ +...++.+++.-.+- |.+-++.++.++++++...
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~G~- 97 (257)
T cd00739 21 LSLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVL-ISVDTFRAEVARAALEAGA- 97 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHhCC-
Confidence 45666666655544 56899999974 3345433 23333 333456666553443 7888999999999998753
Q ss_pred ceeeccccccccchHhhHHHHHHHhCCceeecc
Q 019203 179 TAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYS 211 (344)
Q Consensus 179 ~~~q~~~n~l~~~~~~~l~~~~~~~gi~v~a~s 211 (344)
+ +-+..+....+ ..+++.++++|..++.+.
T Consensus 98 ~-iINdisg~~~~--~~~~~l~~~~~~~vV~m~ 127 (257)
T cd00739 98 D-IINDVSGGSDD--PAMLEVAAEYGAPLVLMH 127 (257)
T ss_pred C-EEEeCCCCCCC--hHHHHHHHHcCCCEEEEC
Confidence 2 33344444322 468899999999999843
No 34
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=77.01 E-value=57 Score=32.31 Aligned_cols=171 Identities=15% Similarity=0.155 Sum_probs=96.0
Q ss_pred CCHHHHHHHHHHHHHc-CCCccccccccCCCc---HHHHHHHH--Hhc-CCCCCeEEEeccCcCCCC-----------CC
Q 019203 38 VSEEDGITMIKHAFSK-GITFFDTADVYGQNA---NEVLLGKA--LKQ-LPREKIQVATKFGIAGIG-----------VA 99 (344)
Q Consensus 38 ~~~~~~~~~l~~A~~~-Gin~~Dta~~Yg~g~---sE~~lg~~--l~~-~~r~~~~i~tK~~~~~~~-----------~~ 99 (344)
.+.++..++++.+++. +++.=|...-+.... -|.+.-.| +++ ...+.+++.+=+.....- ..
T Consensus 28 ~~~~~v~~il~Kal~~~~Ls~eEal~LL~~~~~~~le~L~~~A~~ir~~~~Gn~I~lfapLyiSN~C~n~C~YCgfs~~n 107 (469)
T PRK09613 28 PDKDEIREILEKAKEKKGLSPEEAAVLLNVEDPELLEEIFEAAREIKEKIYGNRIVLFAPLYISNYCVNNCVYCGFRRSN 107 (469)
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHcCCChhHHHHHHHHHHHHHHHHcCCEEEEEEeccccCCCCCCCccCCCccCC
Confidence 3666788899988874 777767665554321 23333222 222 122334333322111100 00
Q ss_pred --ccccCCChHHHHHHHHHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHH----cCcccEEecC--CCCHHHHHH
Q 019203 100 --GVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVE----EGKIKYIGLS--EASPGTIRR 171 (344)
Q Consensus 100 --~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~----~G~ir~iGvs--~~~~~~l~~ 171 (344)
-.....+.+.|.+.++. +...|...+-|..=..| ...+++-+.+.++.+++ .|.++.++++ ..+.+.+++
T Consensus 108 ~~i~r~~Ls~EEI~~ea~~-~~~~G~~~i~LvsGe~p-~~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~eey~~ 185 (469)
T PRK09613 108 KEIKRKKLTQEEIREEVKA-LEDMGHKRLALVAGEDP-PNCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVENYKK 185 (469)
T ss_pred CCCCceECCHHHHHHHHHH-HHHCCCCEEEEEeCCCC-CCCCHHHHHHHHHHHHHhccccCcceeeEEEeecCCHHHHHH
Confidence 11245789999999984 67899887766422222 33467777777777775 5778777775 457788877
Q ss_pred HhhcC--Ccceeeccccc-----ccc-----ch--HhhHHHHHHHhCCceeec
Q 019203 172 AHAVH--PITAVQMEWSL-----WTR-----DI--EEEIIPLCRELGIGIVPY 210 (344)
Q Consensus 172 ~~~~~--~~~~~q~~~n~-----l~~-----~~--~~~l~~~~~~~gi~v~a~ 210 (344)
+.+.. .+.+.|-.||. +++ +. ....++.+++.||.-++.
T Consensus 186 LkeaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~ 238 (469)
T PRK09613 186 LKEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGI 238 (469)
T ss_pred HHHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCe
Confidence 76653 33445555541 111 11 146788888999874443
No 35
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=76.89 E-value=48 Score=28.56 Aligned_cols=145 Identities=18% Similarity=0.126 Sum_probs=83.8
Q ss_pred CHHHHHHHHHHHHHcCCCccccccccCCCcHHHHHHHHHhc----CCCCCeEEEeccCcCCCCCCccccCCChHHHHHHH
Q 019203 39 SEEDGITMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ----LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCC 114 (344)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~sE~~lg~~l~~----~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~ 114 (344)
|.+.+.+++..+++.|+...|.- +.++..++++ -.+++++++-= .+..+.++..+
T Consensus 9 D~~~~~~~v~~~l~~g~~~~~i~--------~~~l~p~m~~vG~~w~~~~i~va~e-------------~~as~~~~~~l 67 (201)
T cd02070 9 DEEETVELVKKALEAGIDPQDII--------EEGLAPGMDIVGDKYEEGEIFVPEL-------------LMAADAMKAGL 67 (201)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHH--------HHHHHHHHHHHHHHHccCCeeHHHH-------------HHHHHHHHHHH
Confidence 78899999999999998777653 2344444433 12344444322 13344455555
Q ss_pred HHHHhhcCCCc---eeEEEecCCCCCCCHHHHHHHHHHHHHcCc-ccEEecCCCCHHHHHHHhhcCCcceeecccccccc
Q 019203 115 EASLKRLDVDY---IDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWTR 190 (344)
Q Consensus 115 ~~sL~~Lg~d~---iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~l~~ 190 (344)
......+.... ---+++-.+..+..--+..=.-.-|...|. +.++| .+.+.+.+.+......++++-+.++.-..
T Consensus 68 ~~l~~~~~~~~~~~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG-~~~p~~~l~~~~~~~~~d~v~lS~~~~~~ 146 (201)
T cd02070 68 DLLKPLLGKSKSAKKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLG-RDVPPEEFVEAVKEHKPDILGLSALMTTT 146 (201)
T ss_pred HHHHHHHhhcCCCCCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECC-CCCCHHHHHHHHHHcCCCEEEEecccccc
Confidence 55544443321 112344444333222222222334556675 56778 55688888888888888888887765444
Q ss_pred chH-hhHHHHHHHhCC
Q 019203 191 DIE-EEIIPLCRELGI 205 (344)
Q Consensus 191 ~~~-~~l~~~~~~~gi 205 (344)
-.. .++++..++.+.
T Consensus 147 ~~~~~~~i~~lr~~~~ 162 (201)
T cd02070 147 MGGMKEVIEALKEAGL 162 (201)
T ss_pred HHHHHHHHHHHHHCCC
Confidence 322 677888887753
No 36
>PRK07945 hypothetical protein; Provisional
Probab=76.38 E-value=69 Score=30.13 Aligned_cols=107 Identities=17% Similarity=0.107 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHcCCCccccccccCC-----CcHHHHHHHHHhcC-----CCCCeEEEeccCcCCCCCCccccCCChHHH
Q 019203 41 EDGITMIKHAFSKGITFFDTADVYGQ-----NANEVLLGKALKQL-----PREKIQVATKFGIAGIGVAGVIVKGAPDYV 110 (344)
Q Consensus 41 ~~~~~~l~~A~~~Gin~~Dta~~Yg~-----g~sE~~lg~~l~~~-----~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i 110 (344)
....+++++|.+.|+..+=.++|.-. +.+...+-+.+... .-.+ |.-+.|.-.. ...+...+..
T Consensus 111 ~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~ky~~--I~Il~GiE~d----~~~~g~~~~~ 184 (335)
T PRK07945 111 SPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEELAP--FRILTGIEVD----ILDDGSLDQE 184 (335)
T ss_pred CCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHhcCC--ceEEEEeEec----ccCCCCcchh
Confidence 44679999999999998766665321 11222222222210 1112 3333333221 0111223333
Q ss_pred HHHHHHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEEec
Q 019203 111 RSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGL 161 (344)
Q Consensus 111 ~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~iGv 161 (344)
++.|+. .||+ +.-+|+.... +.++..+.+.++.+.+.+..||=
T Consensus 185 ----~~~l~~--~D~v-IgSvH~~~~~-~~~~~~~~l~~ai~~~~~dvlgH 227 (335)
T PRK07945 185 ----PELLDR--LDVV-VASVHSKLRM-DAAAMTRRMLAAVANPHTDVLGH 227 (335)
T ss_pred ----HHHHHh--CCEE-EEEeecCCCC-CHHHHHHHHHHHhcCCCCeEEec
Confidence 333443 5776 7889986432 34566788888888888877773
No 37
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=75.43 E-value=38 Score=30.55 Aligned_cols=68 Identities=10% Similarity=-0.013 Sum_probs=43.2
Q ss_pred HHHHHHHcCcccEEec-CCCCHHHHHHHhhcCCcce--eeccccccccchHhhHHHHHHHhCCceeecccCc
Q 019203 146 EMKKLVEEGKIKYIGL-SEASPGTIRRAHAVHPITA--VQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLG 214 (344)
Q Consensus 146 ~L~~l~~~G~ir~iGv-s~~~~~~l~~~~~~~~~~~--~q~~~n~l~~~~~~~l~~~~~~~gi~v~a~spl~ 214 (344)
.|.+-.++|+. .+|+ .......+.+++....+|+ +-.+..+++......++..|+..|+..+.+-|-.
T Consensus 9 ~lk~~l~~g~~-~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~ 79 (256)
T PRK10558 9 KFKAALAAKQV-QIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTN 79 (256)
T ss_pred HHHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCC
Confidence 35555556874 4554 2233334445555544555 4557888877665788889999999988876554
No 38
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=74.55 E-value=65 Score=28.96 Aligned_cols=102 Identities=20% Similarity=0.165 Sum_probs=66.6
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEE-ecCCCCC-CC----HHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhcCCc
Q 019203 105 GAPDYVRSCCEASLKRLDVDYIDLYY-QHRVDTS-VP----IEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPI 178 (344)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~d~iDl~~-lh~~~~~-~~----~~e~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 178 (344)
.+.+.+.+.+++.+ .-|.|.||+-. --+|+.. .+ ++.+...++.+++.-.+ -|.+-++.++.++++++...
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~-piSIDT~~~~v~~aaL~~g~- 97 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDV-PISVDTFNAEVAEAALKAGA- 97 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCcHHHHHHHHHhCC-
Confidence 46677777766554 67999999984 3345432 12 23345566666655333 37888999999999998763
Q ss_pred ceeeccccccccchHhhHHHHHHHhCCceeeccc
Q 019203 179 TAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSP 212 (344)
Q Consensus 179 ~~~q~~~n~l~~~~~~~l~~~~~~~gi~v~a~sp 212 (344)
.+-...+....+ .++++.+++.|..++....
T Consensus 98 -~iINdis~~~~~--~~~~~l~~~~~~~vV~m~~ 128 (258)
T cd00423 98 -DIINDVSGGRGD--PEMAPLAAEYGAPVVLMHM 128 (258)
T ss_pred -CEEEeCCCCCCC--hHHHHHHHHcCCCEEEECc
Confidence 233334443221 4688999999999888654
No 39
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=74.18 E-value=19 Score=31.49 Aligned_cols=81 Identities=12% Similarity=0.235 Sum_probs=54.4
Q ss_pred CCHHHHHHHhhcCCcceeec----cccccccchH---hhHHHHHHHhCCceeecccCcccccCCCCCCCCCCCCcccccc
Q 019203 164 ASPGTIRRAHAVHPITAVQM----EWSLWTRDIE---EEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSFLHFL 236 (344)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~q~----~~n~l~~~~~---~~l~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~ 236 (344)
.++.+++.+.+...+.++-+ +||.+..... .++.++++.-|-.-+...|+..|-..+.
T Consensus 49 ~p~a~vka~Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd~s~~~~--------------- 113 (272)
T COG4130 49 TPAAEVKALAEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLNDGSWPGT--------------- 113 (272)
T ss_pred CCHHHHHHHHHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccCCCCCCc---------------
Confidence 35677777777766554433 6777665322 6899999999999888899986542211
Q ss_pred cCCcCcchhhhHHHHHHHHHHHHHcCC
Q 019203 237 PRFKGENLDRNKSIYFRIGNLAKKYNC 263 (344)
Q Consensus 237 ~~~~~~~~~~~~~~~~~l~~ia~~~~~ 263 (344)
....+.....+..|+.|-.++|+
T Consensus 114 ----~vr~~~lv~AlkaLkpil~~~gi 136 (272)
T COG4130 114 ----AVRREDLVEALKALKPILDEYGI 136 (272)
T ss_pred ----ccchHHHHHHHHHhhHHHHHhCc
Confidence 11124556677888888888876
No 40
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=72.72 E-value=16 Score=31.49 Aligned_cols=150 Identities=17% Similarity=0.185 Sum_probs=91.6
Q ss_pred HHHHHHHHcCCCccccccccCCCcHHHHHHHHHhcCCCCCeEEEeccCcCCCCCCccccCCChHHHHHHHHHH-------
Q 019203 45 TMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEAS------- 117 (344)
Q Consensus 45 ~~l~~A~~~Gin~~Dta~~Yg~g~sE~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s------- 117 (344)
++|..-++-|-+.+|-+-..| .|-+.|++. .++.. . ....+.+.+.+++.+-
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG------~LL~~L~~~--k~v~g---~----------GvEid~~~v~~cv~rGv~Viq~D 63 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDG------ELLAYLKDE--KQVDG---Y----------GVEIDPDNVAACVARGVSVIQGD 63 (193)
T ss_pred HHHHHHcCCCCEEEecCCCch------HHHHHHHHh--cCCeE---E----------EEecCHHHHHHHHHcCCCEEECC
Confidence 556666777888888655443 233455531 12111 0 1124555565555444
Q ss_pred ----HhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhh--cCCcceeeccccccccc
Q 019203 118 ----LKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHA--VHPITAVQMEWSLWTRD 191 (344)
Q Consensus 118 ----L~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~--~~~~~~~q~~~n~l~~~ 191 (344)
|....-+.+|.+.+..-= ..+..-...|+++.+-|+---|++.||.-+..+..+- -.-|..-.++|+-++..
T Consensus 64 ld~gL~~f~d~sFD~VIlsqtL--Q~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTP 141 (193)
T PF07021_consen 64 LDEGLADFPDQSFDYVILSQTL--QAVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTP 141 (193)
T ss_pred HHHhHhhCCCCCccEEehHhHH--HhHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCC
Confidence 444444445544443211 1123345568888999998889999998777655444 22355567888876653
Q ss_pred h-----HhhHHHHHHHhCCceeecccCcccc
Q 019203 192 I-----EEEIIPLCRELGIGIVPYSPLGRGF 217 (344)
Q Consensus 192 ~-----~~~l~~~~~~~gi~v~a~spl~~G~ 217 (344)
. -.+..++|++.||.+.-..++..+.
T Consensus 142 Nih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 142 NIHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred CcccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 1 1688999999999999999987654
No 41
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=71.77 E-value=64 Score=28.90 Aligned_cols=90 Identities=19% Similarity=0.146 Sum_probs=54.6
Q ss_pred HHHHhhcCCCceeEEEecCCCCCCCHH-HHHHHHHHHHHcCcccEEecCCC-CHHHHHHHhhcCCcceeeccccccccch
Q 019203 115 EASLKRLDVDYIDLYYQHRVDTSVPIE-ETIGEMKKLVEEGKIKYIGLSEA-SPGTIRRAHAVHPITAVQMEWSLWTRDI 192 (344)
Q Consensus 115 ~~sL~~Lg~d~iDl~~lh~~~~~~~~~-e~~~~L~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q~~~n~l~~~~ 192 (344)
-+-|+.+|+ |.+.+|..+...... --++.+.++++.-.+.-|..... +++.+.+++....++.+.+---+.....
T Consensus 161 ~~~l~~~G~---~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~ 237 (254)
T TIGR00735 161 AKEVEKLGA---GEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREI 237 (254)
T ss_pred HHHHHHcCC---CEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCC
Confidence 345567775 566666654432111 22566666666666777766644 6788888888766666554222222221
Q ss_pred -HhhHHHHHHHhCCce
Q 019203 193 -EEEIIPLCRELGIGI 207 (344)
Q Consensus 193 -~~~l~~~~~~~gi~v 207 (344)
..++.+.|+++||.|
T Consensus 238 ~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 238 TIGEVKEYLAERGIPV 253 (254)
T ss_pred CHHHHHHHHHHCCCcc
Confidence 267899999999875
No 42
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=71.30 E-value=1.2e+02 Score=30.45 Aligned_cols=100 Identities=11% Similarity=0.074 Sum_probs=56.2
Q ss_pred HHHHHHHHHhc----CCCCCeEEEeccCcCCCCCCccccCCChHHHHHHHHHHHhhcCCCceeEEEecCCCCCCCH-HHH
Q 019203 69 NEVLLGKALKQ----LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPI-EET 143 (344)
Q Consensus 69 sE~~lg~~l~~----~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~-~e~ 143 (344)
+++-|-+++.+ .+.+-++|.+-+. ++-|-..++...+.++.+.++++.++.+.-.... ...
T Consensus 69 ~~~~L~~aI~~~~~~~~P~~I~V~sTC~--------------selIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~~~g~ 134 (511)
T TIGR01278 69 SQTRLVDTVRRVDDRFKPDLIVVTPSCT--------------SSLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKENQAA 134 (511)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEeCCCh--------------HHHhccCHHHHHHHhccCCCcEEEecCCCcccchhHHH
Confidence 56666666665 3344466777763 2223333344444455445789999998755432 222
Q ss_pred HHHHHHHH--------------HcCcccEEecCCC------CHHHHHHHhhcCCcceee
Q 019203 144 IGEMKKLV--------------EEGKIKYIGLSEA------SPGTIRRAHAVHPITAVQ 182 (344)
Q Consensus 144 ~~~L~~l~--------------~~G~ir~iGvs~~------~~~~l~~~~~~~~~~~~q 182 (344)
-.+|+.++ +.+.|--||.++. +...++++++...+.++.
T Consensus 135 ~~al~~lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~ 193 (511)
T TIGR01278 135 DRTLTQLVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNV 193 (511)
T ss_pred HHHHHHHHHHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEE
Confidence 22333222 2355788888753 446677777776666554
No 43
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=70.75 E-value=36 Score=29.93 Aligned_cols=163 Identities=15% Similarity=0.216 Sum_probs=90.4
Q ss_pred CCHHHHHHHHHHHHHcCCCccccccccCCCcHHHHHHHHHhcCCCCCeEEEeccCcCCCCCCccccCCChHHHHHHHHHH
Q 019203 38 VSEEDGITMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEAS 117 (344)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~sE~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 117 (344)
.+.++..++++...+.||..+++....-.-...+.+.+..+..+...+...+. ...+.++..++.
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--------------~~~~~i~~~~~~- 75 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREALPNARLQALCR--------------ANEEDIERAVEA- 75 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHHHSSEEEEEEE--------------SCHHHHHHHHHH-
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhhcccccceeee--------------ehHHHHHHHHHh-
Confidence 47788899999999999999999922221113334444443323333332222 235556666653
Q ss_pred HhhcCCCceeEEEecCCC-----CCC----CHHHHHHHHHHHHHcCcccEEecCC---CCHHHHHHHhhc---CCcceee
Q 019203 118 LKRLDVDYIDLYYQHRVD-----TSV----PIEETIGEMKKLVEEGKIKYIGLSE---ASPGTIRRAHAV---HPITAVQ 182 (344)
Q Consensus 118 L~~Lg~d~iDl~~lh~~~-----~~~----~~~e~~~~L~~l~~~G~ir~iGvs~---~~~~~l~~~~~~---~~~~~~q 182 (344)
+...|.+.+.++.--++. ... .++.+.+.++..++.|.--.+++.. ++++.+.++.+. .+++.+.
T Consensus 76 ~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~ 155 (237)
T PF00682_consen 76 AKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIY 155 (237)
T ss_dssp HHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEE
T ss_pred hHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEE
Confidence 357888877766433320 011 1345566777778889888888854 355555444333 3455555
Q ss_pred cc--ccccccchHhhHHHHHHHh----CCceeecccCcc
Q 019203 183 ME--WSLWTRDIEEEIIPLCREL----GIGIVPYSPLGR 215 (344)
Q Consensus 183 ~~--~n~l~~~~~~~l~~~~~~~----gi~v~a~spl~~ 215 (344)
+. +..+.+..-.+++...+++ .|++.++.-++.
T Consensus 156 l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gl 194 (237)
T PF00682_consen 156 LADTVGIMTPEDVAELVRALREALPDIPLGFHAHNDLGL 194 (237)
T ss_dssp EEETTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-
T ss_pred eeCccCCcCHHHHHHHHHHHHHhccCCeEEEEecCCccc
Confidence 53 3344443335677776664 355666665543
No 44
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=69.96 E-value=97 Score=28.99 Aligned_cols=96 Identities=15% Similarity=0.188 Sum_probs=56.5
Q ss_pred HHHhhcCCCceeEEEecC-CCC-CCCHHHHHHHHHHHHHcCcccE-EecCCC---CHHHHHHHhhcCC-cceeecccccc
Q 019203 116 ASLKRLDVDYIDLYYQHR-VDT-SVPIEETIGEMKKLVEEGKIKY-IGLSEA---SPGTIRRAHAVHP-ITAVQMEWSLW 188 (344)
Q Consensus 116 ~sL~~Lg~d~iDl~~lh~-~~~-~~~~~e~~~~L~~l~~~G~ir~-iGvs~~---~~~~l~~~~~~~~-~~~~q~~~n~l 188 (344)
+.-+.+|.|+||+-+.-. |+. +...++....++...+.=.+=- |..|.. +++.++++++..+ -..+...-+.
T Consensus 83 ~q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~~pLInSat~- 161 (319)
T PRK04452 83 KCVEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGSAEE- 161 (319)
T ss_pred HHHHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEECCH-
Confidence 445688988888876443 222 2234455555555544333333 555532 6788888877633 1122222221
Q ss_pred ccchHhhHHHHHHHhCCceeecccCc
Q 019203 189 TRDIEEEIIPLCRELGIGIVPYSPLG 214 (344)
Q Consensus 189 ~~~~~~~l~~~~~~~gi~v~a~spl~ 214 (344)
.--..+.+.|+++|..|++.+|..
T Consensus 162 --en~~~i~~lA~~y~~~Vva~s~~D 185 (319)
T PRK04452 162 --DNYKKIAAAAMAYGHAVIAWSPLD 185 (319)
T ss_pred --HHHHHHHHHHHHhCCeEEEEcHHH
Confidence 112679999999999999988654
No 45
>PRK08609 hypothetical protein; Provisional
Probab=69.47 E-value=1.4e+02 Score=30.49 Aligned_cols=150 Identities=17% Similarity=0.189 Sum_probs=77.6
Q ss_pred HHHHHHHHHHcCCCccccccccC-----CCcHHHHHHHH------HhcCCCCCeEEEeccCcCCCCCCccccCCChHHHH
Q 019203 43 GITMIKHAFSKGITFFDTADVYG-----QNANEVLLGKA------LKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVR 111 (344)
Q Consensus 43 ~~~~l~~A~~~Gin~~Dta~~Yg-----~g~sE~~lg~~------l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~ 111 (344)
..++++.|.+.|+..+=.++|+. .|.+...+-.. +++.. .++.| ..|.-. ++.++...
T Consensus 351 leemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l~~~~-~~i~I--l~GiEv--------~i~~~g~~ 419 (570)
T PRK08609 351 IEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKALNEKY-PEIDI--LSGIEM--------DILPDGSL 419 (570)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHHHHhc-CCCeE--EEEEEE--------eecCCcch
Confidence 45699999999999988888762 12233333222 22111 12222 222211 11111112
Q ss_pred HHHHHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEEecCC------CC--H---HHHHHHhhcCCcce
Q 019203 112 SCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE------AS--P---GTIRRAHAVHPITA 180 (344)
Q Consensus 112 ~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~iGvs~------~~--~---~~l~~~~~~~~~~~ 180 (344)
.-.+..|+. .||+ +.-+|++.. .+.+++++.+.++.+.|.+--||=-. .. . +.+.+++.... .+
T Consensus 420 d~~~~~L~~--~D~v-I~SvH~~~~-~~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G-~~ 494 (570)
T PRK08609 420 DYDDEVLAE--LDYV-IAAIHSSFS-QSEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETN-TA 494 (570)
T ss_pred hhcHHHHHh--hCEE-EEEeecCCC-CCHHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhC-CE
Confidence 222334554 4776 788887533 34577788888888888877665433 11 1 22222222222 23
Q ss_pred eeccccccccchHhhHHHHHHHhCCcee
Q 019203 181 VQMEWSLWTRDIEEEIIPLCRELGIGIV 208 (344)
Q Consensus 181 ~q~~~n~l~~~~~~~l~~~~~~~gi~v~ 208 (344)
+|+.-+.+.......++..|.+.|+.++
T Consensus 495 lEINa~~~r~~~~~~~~~~~~e~Gv~i~ 522 (570)
T PRK08609 495 LELNANPNRLDLSAEHLKKAQEAGVKLA 522 (570)
T ss_pred EEEcCCccccCccHHHHHHHHHcCCEEE
Confidence 4444433322223567788888887643
No 46
>PLN02389 biotin synthase
Probab=69.14 E-value=1.1e+02 Score=29.43 Aligned_cols=101 Identities=17% Similarity=0.192 Sum_probs=58.1
Q ss_pred CCHHHHHHHHHHHHHcCCCcccccccc-CCCc---HHHHHHHHHhcCCCCCeEEEeccCcCCCCCCccccCCChHHHHHH
Q 019203 38 VSEEDGITMIKHAFSKGITFFDTADVY-GQNA---NEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSC 113 (344)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~Dta~~Y-g~g~---sE~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~ 113 (344)
.+.++..+..+.+.+.|++.|-....+ +.+. .-+.+-+.++..+...+.|....|. .+.+.+
T Consensus 116 Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~l~i~~s~G~-----------l~~E~l--- 181 (379)
T PLN02389 116 MSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGMEVCCTLGM-----------LEKEQA--- 181 (379)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCCcEEEECCCC-----------CCHHHH---
Confidence 478889999999999999987543222 1111 1234555555543334555544432 223322
Q ss_pred HHHHHhhcCCCceeEEEecC-C------CCCCCHHHHHHHHHHHHHcCc
Q 019203 114 CEASLKRLDVDYIDLYYQHR-V------DTSVPIEETIGEMKKLVEEGK 155 (344)
Q Consensus 114 ~~~sL~~Lg~d~iDl~~lh~-~------~~~~~~~e~~~~L~~l~~~G~ 155 (344)
+-|+..|+|++-+-+ .. + -....+++.++.++.+++.|.
T Consensus 182 --~~LkeAGld~~~~~L-eTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi 227 (379)
T PLN02389 182 --AQLKEAGLTAYNHNL-DTSREYYPNVITTRSYDDRLETLEAVREAGI 227 (379)
T ss_pred --HHHHHcCCCEEEeee-cCChHHhCCcCCCCCHHHHHHHHHHHHHcCC
Confidence 355666877654321 21 1 012357888999999999885
No 47
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=69.02 E-value=54 Score=29.54 Aligned_cols=105 Identities=16% Similarity=0.176 Sum_probs=60.9
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEecCCCC-----CCCHHHHHHHHHHHHHc-CcccEEecC---CCCHHHHHHHhh
Q 019203 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDT-----SVPIEETIGEMKKLVEE-GKIKYIGLS---EASPGTIRRAHA 174 (344)
Q Consensus 104 ~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~-----~~~~~e~~~~L~~l~~~-G~ir~iGvs---~~~~~~l~~~~~ 174 (344)
.++.+...+-++ .|.++|+++|.+-+...... .-.....++.++.+++. +..+...+. ......++.+.+
T Consensus 18 ~~~~~~k~~i~~-~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~ 96 (263)
T cd07943 18 QFTLEQVRAIAR-ALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAAD 96 (263)
T ss_pred ecCHHHHHHHHH-HHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHHH
Confidence 466776655555 59999999999986532110 00112245555555433 346666554 224566666665
Q ss_pred cCCcceeeccccccccchHhhHHHHHHHhCCceeec
Q 019203 175 VHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPY 210 (344)
Q Consensus 175 ~~~~~~~q~~~n~l~~~~~~~l~~~~~~~gi~v~a~ 210 (344)
. .++.+.+.+..-+-..-.+.+++++++|+.+...
T Consensus 97 ~-g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 97 L-GVDVVRVATHCTEADVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred c-CCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEE
Confidence 3 4566655444432222367899999999876553
No 48
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=68.06 E-value=1.1e+02 Score=28.67 Aligned_cols=109 Identities=15% Similarity=0.079 Sum_probs=60.3
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEecCCCCCC-CHHHHHHHHHHHHHcCcccEEecCC---------CCHHHHHHHhhc
Q 019203 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDTSV-PIEETIGEMKKLVEEGKIKYIGLSE---------ASPGTIRRAHAV 175 (344)
Q Consensus 106 ~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~-~~~e~~~~L~~l~~~G~ir~iGvs~---------~~~~~l~~~~~~ 175 (344)
+.+.+.+.++..-+..++ .-+.|-.=++.. ....+.+.++.+++.|.++.|.+.+ .+.+.++.+.+.
T Consensus 120 ~~~e~~~~i~~i~~~~~I---~~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~ 196 (321)
T TIGR03822 120 SPAELDAAFAYIADHPEI---WEVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTS 196 (321)
T ss_pred CHHHHHHHHHHHHhCCCc---cEEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHc
Confidence 445555555543333333 234444444443 3456777888888888776555532 234445444443
Q ss_pred CCcceeeccccccc--cchHhhHHHHHHHhCCceeecccCcccc
Q 019203 176 HPITAVQMEWSLWT--RDIEEEIIPLCRELGIGIVPYSPLGRGF 217 (344)
Q Consensus 176 ~~~~~~q~~~n~l~--~~~~~~l~~~~~~~gi~v~a~spl~~G~ 217 (344)
.....+.++.|-.. ......-++.+++.||.+...+++..|.
T Consensus 197 g~~v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gv 240 (321)
T TIGR03822 197 GKTVYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRGV 240 (321)
T ss_pred CCcEEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCC
Confidence 32223444443211 0111467778889999999999998775
No 49
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=66.70 E-value=87 Score=28.43 Aligned_cols=33 Identities=9% Similarity=-0.027 Sum_probs=19.0
Q ss_pred EEecCCCCHHHHHHHHhccCC-CCCHHHHHHHHh
Q 019203 281 VPIPGTTKMKNLDDNIDSLRI-KLTKEDLKEISD 313 (344)
Q Consensus 281 ~vi~G~~~~~~l~enl~a~~~-~Lt~~~~~~i~~ 313 (344)
.+=+|.++++|+++..++.+- -.=..-++.|.+
T Consensus 209 ~vGFGIs~~e~~~~v~~~ADGVIVGSAiV~~i~~ 242 (265)
T COG0159 209 LVGFGISSPEQAAQVAEAADGVIVGSAIVKIIEE 242 (265)
T ss_pred EEecCcCCHHHHHHHHHhCCeEEEcHHHHHHHHh
Confidence 455677888888887766443 233333444433
No 50
>COG1801 Uncharacterized conserved protein [Function unknown]
Probab=66.62 E-value=62 Score=29.36 Aligned_cols=109 Identities=6% Similarity=-0.070 Sum_probs=64.9
Q ss_pred ccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCcccccc-ccCCCcHHHHHHHHHhcCCCCCeEEEeccCcCCCCCCc
Q 019203 22 KLGFGCMNLSGGYSSPVSEEDGITMIKHAFSKGITFFDTAD-VYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAG 100 (344)
Q Consensus 22 ~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~Dta~-~Yg~g~sE~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~ 100 (344)
.||+++|+...+-+....++...+-.-+.....+|.++.-. .|.. .+++.+-++.+. ..+++..+.|+......
T Consensus 4 ~IG~sGW~~~~w~~~~yp~~~~~~~~L~~y~~~f~~VEiN~TFYa~-p~~~t~~~W~~~-~p~~FrFsvK~~~~iTH--- 78 (263)
T COG1801 4 YIGTSGWSYPDWEGLFYPEGLKKKEFLAYYASHFNTVEINSTFYAP-PSPETVLRWAEE-TPDDFRFSVKAPRAITH--- 78 (263)
T ss_pred EEeecCCCcccccccccCcccchhhHHHHHhccCCEEEECCcccCC-CCHHHHHHHHHh-CCCCeEEEEEecccccc---
Confidence 46777776654323322332333333334445577766543 4443 377788888774 67999999998755421
Q ss_pred cccCCCh---HHHHHHHHHHHhhcCCCceeEEEecCCCCCC
Q 019203 101 VIVKGAP---DYVRSCCEASLKRLDVDYIDLYYQHRVDTSV 138 (344)
Q Consensus 101 ~~~~~~~---~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~ 138 (344)
..... ..+.+.+.+-++.|| +.+..+++.-|..-.
T Consensus 79 --~~~l~~~~~~~~~~~~~~~~~L~-~klg~il~Q~Ppsf~ 116 (263)
T COG1801 79 --QRRLKECDFELWEFFLEPLAPLG-ERLGPILFQLPPSFK 116 (263)
T ss_pred --hhhhccchHHHHHHHHHHHHhhh-cccceEEEecCCccc
Confidence 11222 344455555566777 589999999987653
No 51
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=66.34 E-value=56 Score=28.63 Aligned_cols=88 Identities=11% Similarity=0.038 Sum_probs=60.2
Q ss_pred eeEEEecCCCCCCCHHHHHHHHHHHHHcCccc-EEecCCCCHHHHHHHhhcCCcceeeccccccccc-hHhhHHHHHHHh
Q 019203 126 IDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRD-IEEEIIPLCREL 203 (344)
Q Consensus 126 iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~l~~~-~~~~l~~~~~~~ 203 (344)
.++.++-.|-+.. -++.+.+|.+...+. ..+=|-.+.+.+.++++...++++|+..+..-.- ....+..+|+++
T Consensus 120 ~~i~~iEeP~~~~----d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~~d~~~~k~~~~GGi~~~~~i~~~a~~~ 195 (229)
T cd00308 120 YGLAWIEEPCAPD----DLEGYAALRRRTGIPIAADESVTTVDDALEALELGAVDILQIKPTRVGGLTESRRAADLAEAF 195 (229)
T ss_pred cCCCeEECCCCcc----CHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHc
Confidence 4556666654433 356677777777666 3344455777887888888889999877664321 125788999999
Q ss_pred CCceeecccCcccc
Q 019203 204 GIGIVPYSPLGRGF 217 (344)
Q Consensus 204 gi~v~a~spl~~G~ 217 (344)
|+.++..+.+..++
T Consensus 196 gi~~~~~~~~~s~i 209 (229)
T cd00308 196 GIRVMVHGTLESSI 209 (229)
T ss_pred CCEEeecCCCCCHH
Confidence 99999987765443
No 52
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=66.18 E-value=1e+02 Score=27.95 Aligned_cols=103 Identities=16% Similarity=0.101 Sum_probs=63.4
Q ss_pred HHHHHHcCcccEEec-CCCCHHHHHHHhhcCCccee--eccccccccchHhhHHHHHHHhCCceeecccCcccccCCCCC
Q 019203 147 MKKLVEEGKIKYIGL-SEASPGTIRRAHAVHPITAV--QMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAV 223 (344)
Q Consensus 147 L~~l~~~G~ir~iGv-s~~~~~~l~~~~~~~~~~~~--q~~~n~l~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~g~~~ 223 (344)
|.+..++|+. .+|+ .......+.+++....||++ -.+...++......++..++..|+..+..-|-..
T Consensus 9 lk~~L~~G~~-~~G~~~~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~-------- 79 (267)
T PRK10128 9 FKEGLRKGEV-QIGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGS-------- 79 (267)
T ss_pred HHHHHHcCCc-eEEEEecCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCC--------
Confidence 4455556775 3444 23333344455555455554 5678888776556788888888988777655321
Q ss_pred CCCCCCCcccccccCCcCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHhccCC
Q 019203 224 VENVPADSFLHFLPRFKGENLDRNKSIYFRIGNLAKKYNCTSAQLALAWVLGQGDDVVPIPGTTKMKNLDDNIDSLRI 301 (344)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~aqlal~~~l~~~~v~~vi~G~~~~~~l~enl~a~~~ 301 (344)
+ ..+..+|..+.-..++|-..+.++.++.+++..+
T Consensus 80 -----------------------------------------~--~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~rY 114 (267)
T PRK10128 80 -----------------------------------------K--PLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRY 114 (267)
T ss_pred -----------------------------------------H--HHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcCC
Confidence 1 2345566666666667777777777777766665
No 53
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=65.32 E-value=94 Score=27.13 Aligned_cols=145 Identities=12% Similarity=-0.025 Sum_probs=81.5
Q ss_pred CHHHHHHHHHHHHHcCCCccccccccCCCcHHHHHHHHHhc----CCCCCeEEEeccCcCCCCCCccccCCChHHHHHHH
Q 019203 39 SEEDGITMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ----LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCC 114 (344)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~sE~~lg~~l~~----~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~ 114 (344)
|.+++.++++.|++.|+...|+- ++.+-.++.+ -.+.+++++-= .++.+.++..+
T Consensus 13 D~~~~~~~l~~al~~~~~~~~ii--------~~~l~p~m~~vG~~w~~gei~vaqe-------------~~as~~~~~~l 71 (213)
T cd02069 13 IRDGIEEDTEEARQQYARPLEII--------NGPLMDGMKVVGDLFGAGKMFLPQV-------------LKSARVMKAAV 71 (213)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHH--------HHHHHHHHHHHHHHHccCCCcHHHH-------------HHHHHHHHHHH
Confidence 78899999999999998777753 3344444443 13455555422 13444555555
Q ss_pred HHH---HhhcCCC--ceeEEEecCCCCCCCHHHHHHHHHHHHHcCc-ccEEecCCCCHHHHHHHhhcCCcceeecccccc
Q 019203 115 EAS---LKRLDVD--YIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPGTIRRAHAVHPITAVQMEWSLW 188 (344)
Q Consensus 115 ~~s---L~~Lg~d--~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~l 188 (344)
... +...... ..--+++-.+..+..--+..=.-.-|...|. +-++|... +++.+.+.....+++++.+...+-
T Consensus 72 ~~l~~~l~~~~~~~~~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~v-p~e~~v~~~~~~~~~~V~lS~~~~ 150 (213)
T cd02069 72 AYLEPYMEKEKGENSSKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMV-PIEKILEAAKEHKADIIGLSGLLV 150 (213)
T ss_pred HHHHHHHhhccccCCCCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCC-CHHHHHHHHHHcCCCEEEEccchh
Confidence 555 3322210 1112233333322211121112223445664 77888655 778888888878888888876654
Q ss_pred ccchH-hhHHHHHHHhCC
Q 019203 189 TRDIE-EEIIPLCRELGI 205 (344)
Q Consensus 189 ~~~~~-~~l~~~~~~~gi 205 (344)
..-.. .++++.+++.+.
T Consensus 151 ~~~~~~~~~i~~L~~~~~ 168 (213)
T cd02069 151 PSLDEMVEVAEEMNRRGI 168 (213)
T ss_pred ccHHHHHHHHHHHHhcCC
Confidence 43322 678888887765
No 54
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=65.23 E-value=3.4 Score=38.89 Aligned_cols=55 Identities=16% Similarity=0.283 Sum_probs=36.7
Q ss_pred HcCcccEEecCCCCHHHHHHHhhcCC-cceeeccccccccchHhhHHHHHHHhCCc
Q 019203 152 EEGKIKYIGLSEASPGTIRRAHAVHP-ITAVQMEWSLWTRDIEEEIIPLCRELGIG 206 (344)
Q Consensus 152 ~~G~ir~iGvs~~~~~~l~~~~~~~~-~~~~q~~~n~l~~~~~~~l~~~~~~~gi~ 206 (344)
=-|+||++||--++.+++.++..... -+..+.+..++-...+..+++.+++.||+
T Consensus 262 CVGriRYlGVlLYDaDrv~eaAs~~~e~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 262 CVGRIRYLGVLLYDADRVEEAASTENEKDLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred hhcceeeeeeeeecHHHHHHhhcCccHHHHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 35999999999999999988766532 23333333333322235678888888876
No 55
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=65.09 E-value=1.5e+02 Score=29.26 Aligned_cols=113 Identities=13% Similarity=0.092 Sum_probs=59.8
Q ss_pred ccccCCCcHHHHHHHHHhc----CC-CCCeEEEeccCcCCCCCCccccCCChHHHHHHHHHHHh-hcCCCceeEEEecCC
Q 019203 61 ADVYGQNANEVLLGKALKQ----LP-REKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLK-RLDVDYIDLYYQHRV 134 (344)
Q Consensus 61 a~~Yg~g~sE~~lg~~l~~----~~-r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~-~Lg~d~iDl~~lh~~ 134 (344)
.-.|| .|+-|-++++. .+ .+=++|.|-+...-- .-+.+.+.+.+++-++ ...--.+.++.+|.|
T Consensus 65 d~VfG---G~~~L~~~I~~~~~~~~~p~~I~V~tTC~~eiI-------GDDi~~vv~~~~~~~~~e~~~~~~~vi~v~tp 134 (454)
T cd01973 65 SAVFG---GAKRVEEGVLVLARRYPDLRVIPIITTCSTEII-------GDDIEGVIRKLNEALKEEFPDREVHLIPVHTP 134 (454)
T ss_pred ceEEC---cHHHHHHHHHHHHHhcCCCCEEEEECCchHhhh-------ccCHHHHHHHHHhhhhhccCCCCCeEEEeeCC
Confidence 35788 46666677765 32 234678888754321 1123333333332221 111013789999998
Q ss_pred CCCCCH-HHHHHHHHHHHH--------cCcccEEecCC--CCHHHHHHHhhcCCcceeec
Q 019203 135 DTSVPI-EETIGEMKKLVE--------EGKIKYIGLSE--ASPGTIRRAHAVHPITAVQM 183 (344)
Q Consensus 135 ~~~~~~-~e~~~~L~~l~~--------~G~ir~iGvs~--~~~~~l~~~~~~~~~~~~q~ 183 (344)
+-.... .....+++.+.+ +++|--||-.+ .+.+.++++++...+.++.+
T Consensus 135 gF~Gs~~~G~~~a~~ali~~~~~~~~~~~~VNii~~~~~~~D~~ei~~lL~~~Gl~v~~~ 194 (454)
T cd01973 135 SFKGSMVTGYDEAVRSVVKTIAKKGAPSGKLNVFTGWVNPGDVVELKHYLSEMDVEANIL 194 (454)
T ss_pred CcCCCHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCEEEe
Confidence 876432 233333333332 46677776332 23467777787777776644
No 56
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=64.84 E-value=82 Score=28.27 Aligned_cols=66 Identities=9% Similarity=-0.075 Sum_probs=40.6
Q ss_pred HHHHHcCcccEEec-CCCCHHHHHHHhhcCCcce--eeccccccccchHhhHHHHHHHhCCceeecccCc
Q 019203 148 KKLVEEGKIKYIGL-SEASPGTIRRAHAVHPITA--VQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLG 214 (344)
Q Consensus 148 ~~l~~~G~ir~iGv-s~~~~~~l~~~~~~~~~~~--~q~~~n~l~~~~~~~l~~~~~~~gi~v~a~spl~ 214 (344)
.+-.++|+. .+|+ .......+.+++....||+ +-.+..+++......++..++..|+..+.+-|-.
T Consensus 4 k~~l~~g~~-~~G~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~ 72 (249)
T TIGR03239 4 RQDLLARET-LIGCWSALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWN 72 (249)
T ss_pred HHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCC
Confidence 344445764 4554 2333334445555554555 4557888877655778888888998888766553
No 57
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=63.49 E-value=47 Score=29.56 Aligned_cols=116 Identities=15% Similarity=0.084 Sum_probs=62.8
Q ss_pred cccccccccCCCCCCCCCCHHHHHHHHHHHHHc-CCCccccccccCCCcHHHHHHHHHhcCCCCCeEEEeccCcCCCCCC
Q 019203 21 SKLGFGCMNLSGGYSSPVSEEDGITMIKHAFSK-GITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVA 99 (344)
Q Consensus 21 s~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~-Gin~~Dta~~Yg~g~sE~~lg~~l~~~~r~~~~i~tK~~~~~~~~~ 99 (344)
|+|.+||..+.+ .+++..|+++ |...+=.|----+-.....-..++.-.+++++.+.-..
T Consensus 9 SRL~lGTgky~s-----------~~~m~~ai~aSg~evvTvalRR~~~~~~~~~~~~~~~i~~~~~~lLPNT-------- 69 (247)
T PF05690_consen 9 SRLILGTGKYPS-----------PEVMREAIEASGAEVVTVALRRVNLGSKPGGDNILDYIDRSGYTLLPNT-------- 69 (247)
T ss_dssp -SEEEE-STSSS-----------HHHHHHHHHHTT-SEEEEECCGSTTTS-TTCHHCCCCTTCCTSEEEEE---------
T ss_pred cceEEecCCCCC-----------HHHHHHHHHHhCCcEEEEEEecccCCCCCCCccHHHHhcccCCEECCcC--------
Confidence 889999976542 3566666654 65555443111000000000112222455666544332
Q ss_pred ccccCCChHHHHHHHHHHHhhcCCCceeEEEecCCCCCC-CHHHHHHHHHHHHHcCccc
Q 019203 100 GVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSV-PIEETIGEMKKLVEEGKIK 157 (344)
Q Consensus 100 ~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~-~~~e~~~~L~~l~~~G~ir 157 (344)
....+.+.-.+..+-..+-++++.|=|=.+..+.... +.-|++++-+.|+++|-+-
T Consensus 70 --aGc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~V 126 (247)
T PF05690_consen 70 --AGCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVV 126 (247)
T ss_dssp --TT-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EE
T ss_pred --CCCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEE
Confidence 2346777778888888899999988887777665543 5579999999999999643
No 58
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=63.14 E-value=47 Score=27.90 Aligned_cols=104 Identities=12% Similarity=0.096 Sum_probs=67.0
Q ss_pred HHHHHHH--cCCCcccccc--------ccCCCcHHHHHHHHHhcCCCCCeEEEeccCcCCCCCCcccc--CCChHHHHHH
Q 019203 46 MIKHAFS--KGITFFDTAD--------VYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIV--KGAPDYVRSC 113 (344)
Q Consensus 46 ~l~~A~~--~Gin~~Dta~--------~Yg~g~sE~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~--~~~~~~i~~~ 113 (344)
-.++|.. ++|-++||-. .|- |+.+..+-..+.+ .|-++.|.++--..+.+++.... ...+..+..-
T Consensus 70 ~~d~av~~a~~v~fiDTD~itT~~~~~~y~-gr~~P~~~~~i~~-~r~DL~lLl~p~t~wvaDG~R~~~~~~~R~~F~~~ 147 (187)
T COG3172 70 YEDAAVRYANKVAFIDTDFLTTQAFCKKYE-GREHPFLQALIAE-YRFDLTLLLEPNTPWVADGLRSLGSSVQRQEFQNL 147 (187)
T ss_pred HHHHHHhCCCceEEEeccHHHHHHHHHHHc-ccCCchHHHHHhh-cccceEEEcCCCCceeCCCccccccHhHHHHHHHH
Confidence 3444543 4999999843 332 3344566666664 67888888775433333332222 2367788889
Q ss_pred HHHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcC
Q 019203 114 CEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG 154 (344)
Q Consensus 114 ~~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G 154 (344)
+++.|++-+..|+ .|..++.........++.++|...+
T Consensus 148 l~~~L~~~~~~~v---~i~~~~y~eR~~~~~~aV~ell~~~ 185 (187)
T COG3172 148 LEQMLEENNIPFV---VIEGEDYLERYLQAVEAVEELLGEK 185 (187)
T ss_pred HHHHHHHhCCcEE---EEcCCCHHHHHHHHHHHHHHHHhcc
Confidence 9999999986664 4556555555667888888888776
No 59
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=63.08 E-value=31 Score=32.81 Aligned_cols=211 Identities=18% Similarity=0.104 Sum_probs=97.1
Q ss_pred CHHHHHHHHHHHHHcCCCccccccccCCCcHHHHHH---HHHhcCCCCCeEEEeccCcCCCCCCccccCCChHHHHHHHH
Q 019203 39 SEEDGITMIKHAFSKGITFFDTADVYGQNANEVLLG---KALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCE 115 (344)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~sE~~lg---~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (344)
+.++..+.|+.|.++|++.+=|+=+.-.+..+..+. +.++..+...+.|+.-+.+..-. .-+.+.+.+
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~~l~----~lg~~~~dl----- 82 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPEDDPEDYLERLKELLKLAKELGMEVIADISPKVLK----KLGISYDDL----- 82 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE---------HHHHHHHHHHHHHHCT-EEEEEE-CCHHH----TTT-BTTBT-----
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHH----HcCCCHHHH-----
Confidence 578889999999999999999998776543333332 22222244666666655432100 001111111
Q ss_pred HHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhcC-Ccceeeccccccccc---
Q 019203 116 ASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVH-PITAVQMEWSLWTRD--- 191 (344)
Q Consensus 116 ~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~-~~~~~q~~~n~l~~~--- 191 (344)
..++.||++. +=| |.-... +.+.+|-+.|.-=.+=.|+.+.+.+..+.+.. .+.-+..-+|.+-+.
T Consensus 83 ~~~~~lGi~~---lRl---D~Gf~~----~~ia~ls~ng~~I~LNASti~~~~l~~L~~~~~~~~~i~a~HNfYPr~~TG 152 (357)
T PF05913_consen 83 SFFKELGIDG---LRL---DYGFSG----EEIAKLSKNGIKIELNASTITEEELDELIKYGANFSNIIACHNFYPRPYTG 152 (357)
T ss_dssp HHHHHHT-SE---EEE---SSS-SC----HHHHHHTTT-SEEEEETTT--CCHHHHHCCTT--GGGEEEE---B-STT-S
T ss_pred HHHHHcCCCE---EEE---CCCCCH----HHHHHHHhCCCEEEEECCCCChHHHHHHHHhcCCHHHeEEEecccCCCCCC
Confidence 1345555432 222 222222 23334444466556666787788888887764 344444444443332
Q ss_pred ----hHhhHHHHHHHhCCceeecccCcccccCCCCCCCCCCCCcccccccCCcCcchhhhHHHHHHHHHHHHHcCCCHHH
Q 019203 192 ----IEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSFLHFLPRFKGENLDRNKSIYFRIGNLAKKYNCTSAQ 267 (344)
Q Consensus 192 ----~~~~l~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~aq 267 (344)
.-.+.-.+.++.||.+.|+-|=.. ...|. ..+..|- .++|.--+..
T Consensus 153 Ls~~~f~~~n~~~k~~gi~~~AFI~g~~-~~rGP-l~~GLPT----------------------------lE~hR~~~p~ 202 (357)
T PF05913_consen 153 LSEEFFIEKNQLLKEYGIKTAAFIPGDE-NKRGP-LYEGLPT----------------------------LEKHRNLPPY 202 (357)
T ss_dssp B-HHHHHHHHHHHHHTT-EEEEEE--SS-S-BTT-T-S--BS----------------------------BGGGTTS-HH
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEecCCC-cccCC-ccCCCCc----------------------------cHHHcCCCHH
Confidence 113455667888999999877652 22211 0011110 1122223455
Q ss_pred HHHHHHHhCCCCeEEecCCC--CHHHHHHHHhc
Q 019203 268 LALAWVLGQGDDVVPIPGTT--KMKNLDDNIDS 298 (344)
Q Consensus 268 lal~~~l~~~~v~~vi~G~~--~~~~l~enl~a 298 (344)
+|...+...+.+.-|++|=. +.+.+++....
T Consensus 203 ~aa~~L~~~~~iD~V~IGD~~~s~~el~~~~~~ 235 (357)
T PF05913_consen 203 AAALELFALGLIDDVIIGDPFASEEELKQLAQY 235 (357)
T ss_dssp HHHHHHHHTTT--EEEE-SC---HHHHHHHHHC
T ss_pred HHHHHHHhcCCCCEEEECCCcCCHHHHHHHHHH
Confidence 57778888888899999987 55556655444
No 60
>PRK00208 thiG thiazole synthase; Reviewed
Probab=62.94 E-value=1.2e+02 Score=27.33 Aligned_cols=107 Identities=14% Similarity=0.062 Sum_probs=68.3
Q ss_pred ccCCChHHHHHHHHHHHhhcCCCceeEEEecCCCCCC-CHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhcCCcce
Q 019203 102 IVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSV-PIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITA 180 (344)
Q Consensus 102 ~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~-~~~e~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~ 180 (344)
....+.+.-.+-.+-..+-++++.|=|=.+..+.... +..+++++.++|+++|.+-. =+++-++...+++.+. .+++
T Consensus 70 aG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vl-pyc~~d~~~ak~l~~~-G~~~ 147 (250)
T PRK00208 70 AGCRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVL-PYCTDDPVLAKRLEEA-GCAA 147 (250)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHc-CCCE
Confidence 3457788878888888888899999888888776543 67899999999999998644 2444456666555554 4444
Q ss_pred eeccccccccc--h-HhhHHHHHHH-hCCceeec
Q 019203 181 VQMEWSLWTRD--I-EEEIIPLCRE-LGIGIVPY 210 (344)
Q Consensus 181 ~q~~~n~l~~~--~-~~~l~~~~~~-~gi~v~a~ 210 (344)
++.-=.+.-.. . ..++++...+ .+++|++-
T Consensus 148 vmPlg~pIGsg~gi~~~~~i~~i~e~~~vpVIve 181 (250)
T PRK00208 148 VMPLGAPIGSGLGLLNPYNLRIIIEQADVPVIVD 181 (250)
T ss_pred eCCCCcCCCCCCCCCCHHHHHHHHHhcCCeEEEe
Confidence 43211111111 0 1344555555 36776663
No 61
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=62.76 E-value=25 Score=32.29 Aligned_cols=103 Identities=12% Similarity=0.028 Sum_probs=60.8
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhcCCcceeec
Q 019203 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAVQM 183 (344)
Q Consensus 104 ~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~ 183 (344)
.++.+...+ +=+.|.++|+++|.+-.++.|...-...+.++.+..+.+...++...+. .....++++++.. ++.+.+
T Consensus 22 ~~s~e~k~~-ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~g-~~~v~i 98 (287)
T PRK05692 22 FIPTADKIA-LIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAAG-ADEVAV 98 (287)
T ss_pred CcCHHHHHH-HHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHcC-CCEEEE
Confidence 356665544 4456999999999998666554222223345666666554446655554 4677788877752 233333
Q ss_pred cccc---------cccch-----HhhHHHHHHHhCCceee
Q 019203 184 EWSL---------WTRDI-----EEEIIPLCRELGIGIVP 209 (344)
Q Consensus 184 ~~n~---------l~~~~-----~~~l~~~~~~~gi~v~a 209 (344)
.++. -.... -.+.+++++++|+.+.+
T Consensus 99 ~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~ 138 (287)
T PRK05692 99 FASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRG 138 (287)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 2222 11111 15789999999998863
No 62
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=62.12 E-value=1.4e+02 Score=28.09 Aligned_cols=94 Identities=15% Similarity=0.101 Sum_probs=51.4
Q ss_pred CCCeEEEeccCcCCCCCCccccCCChHHHHHHHHHHHhhcC-CCceeEEEecCCCC-----------C--CCHHHHHHHH
Q 019203 82 REKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLD-VDYIDLYYQHRVDT-----------S--VPIEETIGEM 147 (344)
Q Consensus 82 r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg-~d~iDl~~lh~~~~-----------~--~~~~e~~~~L 147 (344)
..++.|..|++..... ....+.+... .+=+.|+..| +|+|++ |.... . ..-.-.|+..
T Consensus 206 g~~~~v~iRl~~~~~~----~~G~~~~e~~-~~~~~l~~~G~vd~i~v---s~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (343)
T cd04734 206 GPDFIVGIRISGDEDT----EGGLSPDEAL-EIAARLAAEGLIDYVNV---SAGSYYTLLGLAHVVPSMGMPPGPFLPLA 277 (343)
T ss_pred CCCCeEEEEeehhhcc----CCCCCHHHHH-HHHHHHHhcCCCCEEEe---CCCCCCcccccccccCCCCCCcchhHHHH
Confidence 4567788888754321 1124444443 3334556666 555554 32110 0 0111135555
Q ss_pred HHHHHcCcccEEecCCC-CHHHHHHHhhcCCcceeec
Q 019203 148 KKLVEEGKIKYIGLSEA-SPGTIRRAHAVHPITAVQM 183 (344)
Q Consensus 148 ~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q~ 183 (344)
..+++.=++--|++.+. +++.++++++....+.+.+
T Consensus 278 ~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~ 314 (343)
T cd04734 278 ARIKQAVDLPVFHAGRIRDPAEAEQALAAGHADMVGM 314 (343)
T ss_pred HHHHHHcCCCEEeeCCCCCHHHHHHHHHcCCCCeeee
Confidence 66666556667777764 7788888887776666655
No 63
>PLN02363 phosphoribosylanthranilate isomerase
Probab=61.94 E-value=30 Score=31.21 Aligned_cols=69 Identities=19% Similarity=0.207 Sum_probs=46.8
Q ss_pred HhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEEecC-CCCHHHHHHHhhcCCcceeeccccc
Q 019203 118 LKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPGTIRRAHAVHPITAVQMEWSL 187 (344)
Q Consensus 118 L~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~n~ 187 (344)
..++|+|++-+++..........+.+-+....+ ....++.+||. +.+++.+.++++..+++++|++-+.
T Consensus 63 a~~~GaD~iGfIf~~~SpR~Vs~e~a~~I~~~l-~~~~~~~VgVfv~~~~~~I~~~~~~~~ld~VQLHG~e 132 (256)
T PLN02363 63 AVEAGADFIGMILWPKSKRSISLSVAKEISQVA-REGGAKPVGVFVDDDANTILRAADSSDLELVQLHGNG 132 (256)
T ss_pred HHHcCCCEEEEecCCCCCCcCCHHHHHHHHHhc-cccCccEEEEEeCCCHHHHHHHHHhcCCCEEEECCCC
Confidence 345899999997544333334444444444333 32246789995 7789999999999999999997543
No 64
>PRK13796 GTPase YqeH; Provisional
Probab=61.69 E-value=1.5e+02 Score=28.21 Aligned_cols=121 Identities=14% Similarity=0.174 Sum_probs=78.2
Q ss_pred CCHHHHHHHHHHHHHcC---CCccccccccCCCcHHHHHHHHHhcCCCCCeEEEeccCcCCCCCCccccCCChHHHHHHH
Q 019203 38 VSEEDGITMIKHAFSKG---ITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCC 114 (344)
Q Consensus 38 ~~~~~~~~~l~~A~~~G---in~~Dta~~Yg~g~sE~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~ 114 (344)
.+.++..++++..-+.- +-.+|..+.-+. -...+.+... .+.-++|.+|.-... .....+.+..-+
T Consensus 54 ~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s--~~~~L~~~~~--~kpviLViNK~DLl~-------~~~~~~~i~~~l 122 (365)
T PRK13796 54 LTDDDFLKLLNGIGDSDALVVNVVDIFDFNGS--WIPGLHRFVG--NNPVLLVGNKADLLP-------KSVKKNKVKNWL 122 (365)
T ss_pred CCHHHHHHHHHhhcccCcEEEEEEECccCCCc--hhHHHHHHhC--CCCEEEEEEchhhCC-------CccCHHHHHHHH
Confidence 45666777777776555 445776553332 2344444443 355678999974321 123355566666
Q ss_pred HHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEEecCCCCHHHHH
Q 019203 115 EASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIR 170 (344)
Q Consensus 115 ~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~iGvs~~~~~~l~ 170 (344)
+.-.+.+|....|++.+..-. ...++++++.+.++.+.+.+-.+|.+|..-..+-
T Consensus 123 ~~~~k~~g~~~~~v~~vSAk~-g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTLi 177 (365)
T PRK13796 123 RQEAKELGLRPVDVVLISAQK-GHGIDELLEAIEKYREGRDVYVVGVTNVGKSTLI 177 (365)
T ss_pred HHHHHhcCCCcCcEEEEECCC-CCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHHH
Confidence 666777786555777765443 3467889999988877888999999999776543
No 65
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=61.36 E-value=60 Score=28.52 Aligned_cols=97 Identities=20% Similarity=0.193 Sum_probs=56.8
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhh---cCCccee
Q 019203 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHA---VHPITAV 181 (344)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~---~~~~~~~ 181 (344)
++.+...+-++ .|.++|+++|++- .|.......+.++.+.+.... .+..+++......++...+ ...++.+
T Consensus 11 ~~~~~k~~i~~-~L~~~Gv~~iEvg---~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~~i 84 (237)
T PF00682_consen 11 FSTEEKLEIAK-ALDEAGVDYIEVG---FPFASEDDFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAGIDII 84 (237)
T ss_dssp --HHHHHHHHH-HHHHHTTSEEEEE---HCTSSHHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTTSSEE
T ss_pred cCHHHHHHHHH-HHHHhCCCEEEEc---ccccCHHHHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhccCCEE
Confidence 56665555554 6999999999988 332222234555566666665 4445555556666666443 2444555
Q ss_pred eccccccc--c------------chHhhHHHHHHHhCCce
Q 019203 182 QMEWSLWT--R------------DIEEEIIPLCRELGIGI 207 (344)
Q Consensus 182 q~~~n~l~--~------------~~~~~l~~~~~~~gi~v 207 (344)
.+..+.-+ . +.-...+.++++.|+.+
T Consensus 85 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 85 RIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp EEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred EecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 44433322 1 11157899999999998
No 66
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=61.01 E-value=54 Score=29.43 Aligned_cols=118 Identities=14% Similarity=0.199 Sum_probs=63.3
Q ss_pred HHHHHHHHHhhcCCCceeEEEe--cCCCCCCCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhcCCcceeeccccc
Q 019203 110 VRSCCEASLKRLDVDYIDLYYQ--HRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAVQMEWSL 187 (344)
Q Consensus 110 i~~~~~~sL~~Lg~d~iDl~~l--h~~~~~~~~~e~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~ 187 (344)
+.+.++ .++++|.++|++..- |...... ..+.++.|.++.++--++-.++.... ...++|+
T Consensus 15 l~~~l~-~~~~~G~~~vEl~~~~~~~~~~~~-~~~~~~~l~~~~~~~gl~v~s~~~~~---------------~~~~~~~ 77 (275)
T PRK09856 15 IEHAFR-DASELGYDGIEIWGGRPHAFAPDL-KAGGIKQIKALAQTYQMPIIGYTPET---------------NGYPYNM 77 (275)
T ss_pred HHHHHH-HHHHcCCCEEEEccCCcccccccc-CchHHHHHHHHHHHcCCeEEEecCcc---------------cCcCccc
Confidence 344444 678899999998631 2111111 12345555555554444544443210 0111222
Q ss_pred cccc---------hHhhHHHHHHHhCCceeecccCcccccCCCCCCCCCCCCcccccccCCcCcchhhhHHHHHHHHHHH
Q 019203 188 WTRD---------IEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSFLHFLPRFKGENLDRNKSIYFRIGNLA 258 (344)
Q Consensus 188 l~~~---------~~~~l~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia 258 (344)
.... .....+++|+..|...+...|...|... -....++...+.++.+.++|
T Consensus 78 ~~~~~~~r~~~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~-------------------~~~~~~~~~~~~l~~l~~~a 138 (275)
T PRK09856 78 MLGDEHMRRESLDMIKLAMDMAKEMNAGYTLISAAHAGYLT-------------------PPNVIWGRLAENLSELCEYA 138 (275)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCC-------------------CHHHHHHHHHHHHHHHHHHH
Confidence 1111 1156789999999999877665433210 01122455667788888999
Q ss_pred HHcCC
Q 019203 259 KKYNC 263 (344)
Q Consensus 259 ~~~~~ 263 (344)
+++|+
T Consensus 139 ~~~gv 143 (275)
T PRK09856 139 ENIGM 143 (275)
T ss_pred HHcCC
Confidence 99886
No 67
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=59.72 E-value=1.9e+02 Score=28.69 Aligned_cols=150 Identities=13% Similarity=0.086 Sum_probs=80.6
Q ss_pred CHHHHHHHHHHHHHcCCCccccccccCCCc-HHHHHHHHHhcCCC-CCeEEEeccCcCCCCCCccccCCChHHHHHHHHH
Q 019203 39 SEEDGITMIKHAFSKGITFFDTADVYGQNA-NEVLLGKALKQLPR-EKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEA 116 (344)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~-sE~~lg~~l~~~~r-~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (344)
+.+-....++.|.++||..|=..++-..-+ .+..+. +.++... -.+.|+-.. .+..+.+++.+.+++
T Consensus 103 pddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~-~ak~~G~~~~~~i~yt~----------sp~~t~~y~~~~a~~ 171 (468)
T PRK12581 103 ADDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALR-AVKKTGKEAQLCIAYTT----------SPVHTLNYYLSLVKE 171 (468)
T ss_pred cchHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHH-HHHHcCCEEEEEEEEEe----------CCcCcHHHHHHHHHH
Confidence 345567789999999999887776554322 233333 3332111 112222222 123567777777765
Q ss_pred HHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEEecCCCCHHHH-----HHHhhcCCcceeeccccccccc
Q 019203 117 SLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTI-----RRAHAVHPITAVQMEWSLWTRD 191 (344)
Q Consensus 117 sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~iGvs~~~~~~l-----~~~~~~~~~~~~q~~~n~l~~~ 191 (344)
+..+|+ |.+.|-...-.....++.+.+..+++... .-||+=.|+...+ ..+++ ...+.+....+.+..+
T Consensus 172 -l~~~Ga---d~I~IkDtaG~l~P~~v~~Lv~alk~~~~-~pi~~H~Hnt~GlA~An~laAie-AGad~vD~ai~g~g~g 245 (468)
T PRK12581 172 -LVEMGA---DSICIKDMAGILTPKAAKELVSGIKAMTN-LPLIVHTHATSGISQMTYLAAVE-AGADRIDTALSPFSEG 245 (468)
T ss_pred -HHHcCC---CEEEECCCCCCcCHHHHHHHHHHHHhccC-CeEEEEeCCCCccHHHHHHHHHH-cCCCEEEeeccccCCC
Confidence 556885 55666655555566777777777776544 3577766543322 12222 2344444444444332
Q ss_pred ---h-HhhHHHHHHHhCC
Q 019203 192 ---I-EEEIIPLCRELGI 205 (344)
Q Consensus 192 ---~-~~~l~~~~~~~gi 205 (344)
+ .+.++..++..|+
T Consensus 246 agN~~tE~lv~~L~~~g~ 263 (468)
T PRK12581 246 TSQPATESMYLALKEAGY 263 (468)
T ss_pred cCChhHHHHHHHHHhcCC
Confidence 1 1455655655543
No 68
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=59.56 E-value=70 Score=27.43 Aligned_cols=47 Identities=15% Similarity=0.140 Sum_probs=28.7
Q ss_pred HHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEEecCCCCHHHH
Q 019203 116 ASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTI 169 (344)
Q Consensus 116 ~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~iGvs~~~~~~l 169 (344)
+....++ +|.++||..++ .+..+.+.+......++.+|++......+
T Consensus 67 ~ia~~~~---~d~Vqlhg~e~----~~~~~~l~~~~~~~~i~~i~~~~~~~~~~ 113 (203)
T cd00405 67 EIAEELG---LDVVQLHGDES----PEYCAQLRARLGLPVIKAIRVKDEEDLEK 113 (203)
T ss_pred HHHHhcC---CCEEEECCCCC----HHHHHHHHhhcCCcEEEEEecCChhhHHH
Confidence 3444555 68899998642 22334444433456899999998755443
No 69
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=59.39 E-value=18 Score=27.62 Aligned_cols=55 Identities=24% Similarity=0.204 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHhhcCCcceeecccccccc-chHhhHHHHHHHhCCceeecccCcccc
Q 019203 162 SEASPGTIRRAHAVHPITAVQMEWSLWTR-DIEEEIIPLCRELGIGIVPYSPLGRGF 217 (344)
Q Consensus 162 s~~~~~~l~~~~~~~~~~~~q~~~n~l~~-~~~~~l~~~~~~~gi~v~a~spl~~G~ 217 (344)
+.++.+.++++++...++++|+.....-- .....+..+|+++|+.++..+. ..++
T Consensus 3 ~~~~~~~~~~li~~~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~~i 58 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAGAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ESGI 58 (111)
T ss_dssp TSSSHHHHHHHHHTTSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SSHH
T ss_pred CCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CCcH
Confidence 45678899999998889999987554321 1126899999999999999987 5443
No 70
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=59.05 E-value=1.5e+02 Score=27.35 Aligned_cols=180 Identities=16% Similarity=0.155 Sum_probs=89.1
Q ss_pred ccccccccCCCCCCC-CCCHHHHHHHHHHHHH-cCCCccccccccCCCc---HHHHHHHHHhcC--CCCCeEEEeccCcC
Q 019203 22 KLGFGCMNLSGGYSS-PVSEEDGITMIKHAFS-KGITFFDTADVYGQNA---NEVLLGKALKQL--PREKIQVATKFGIA 94 (344)
Q Consensus 22 ~lglG~~~~~~~~~~-~~~~~~~~~~l~~A~~-~Gin~~Dta~~Yg~g~---sE~~lg~~l~~~--~r~~~~i~tK~~~~ 94 (344)
.|.||.+.-+. +.. ..+.++..+.+...++ .|+..+|---.|+.-. +-..+-++|+.. .+..+.|+.-++..
T Consensus 71 iiS~GG~~g~~-~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq~~~p~l~vs~Tlp~~ 149 (294)
T cd06543 71 IVSFGGASGTP-LATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQKEYPDLKISFTLPVL 149 (294)
T ss_pred EEEecCCCCCc-cccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 34677665322 221 1244444444444554 5999999755554311 124455555541 23456666666433
Q ss_pred CCCCCccccCCChHHHHHHHHHHHhhcCC--CceeEEEecCCCC---CCCHHHHHHHHHHHHHcCcccEEecCCCCHHHH
Q 019203 95 GIGVAGVIVKGAPDYVRSCCEASLKRLDV--DYIDLYYQHRVDT---SVPIEETIGEMKKLVEEGKIKYIGLSEASPGTI 169 (344)
Q Consensus 95 ~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~--d~iDl~~lh~~~~---~~~~~e~~~~L~~l~~~G~ir~iGvs~~~~~~l 169 (344)
+ ..++++.+ .+-+..+.-|+ |+|.++-...-.. ...-+.+..+.+.++.+=+--+=+ ++..++
T Consensus 150 p-------~gl~~~g~--~~l~~a~~~Gv~~d~VNiMtmDyg~~~~~~~mg~~a~~aa~~~~~ql~~~~~~---~s~~~~ 217 (294)
T cd06543 150 P-------TGLTPDGL--NVLEAAAANGVDLDTVNIMTMDYGSSAGSQDMGAAAISAAESLHDQLKDLYPK---LSDAEL 217 (294)
T ss_pred C-------CCCChhHH--HHHHHHHHcCCCcceeeeeeecCCCCCCcccHHHHHHHHHHHHHHHHHHHccC---CCHHHH
Confidence 2 12333322 23444455553 5666665544332 122345556665555432222212 333444
Q ss_pred HHHhhcCC---cceeeccccccccchHhhHHHHHHHhCCceeecccCccc
Q 019203 170 RRAHAVHP---ITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRG 216 (344)
Q Consensus 170 ~~~~~~~~---~~~~q~~~n~l~~~~~~~l~~~~~~~gi~v~a~spl~~G 216 (344)
-..+...+ ..-++-+ ++.......+..|++++||+.+.+..+.+.
T Consensus 218 ~~~ig~TpMiG~nD~~~e--~ft~~da~~~~~fA~~~~l~~~s~Ws~~RD 265 (294)
T cd06543 218 WAMIGVTPMIGVNDVGSE--VFTLADAQTLVDFAKEKGLGRLSMWSLNRD 265 (294)
T ss_pred HHHccccccccccCCCCc--eeeHHHHHHHHHHHHhCCCCeEeeeeccCC
Confidence 33334322 1111211 222222378999999999999999888743
No 71
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=58.98 E-value=1.8e+02 Score=28.33 Aligned_cols=110 Identities=16% Similarity=0.175 Sum_probs=57.8
Q ss_pred cccccCCCcHHHHHHHHHhc----CCCCCeEEEeccCcCCCCCCccccCCChHHHHHHHHHHHhhcCC-CceeEEEecCC
Q 019203 60 TADVYGQNANEVLLGKALKQ----LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDV-DYIDLYYQHRV 134 (344)
Q Consensus 60 ta~~Yg~g~sE~~lg~~l~~----~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~-d~iDl~~lh~~ 134 (344)
..-.|| .|+-|-+++++ .+.+=++|.|-+-..- --+.+...+++.-++... ..+.++.++.|
T Consensus 63 ~d~V~G---g~~~L~~ai~~~~~~~~p~~I~v~ttC~~~i----------iGdDi~~v~~~~~~~~~~~~~~~vi~v~tp 129 (435)
T cd01974 63 DAAVFG---GQNNLIDGLKNAYAVYKPDMIAVSTTCMAEV----------IGDDLNAFIKNAKNKGSIPADFPVPFANTP 129 (435)
T ss_pred CceEEC---cHHHHHHHHHHHHHhcCCCEEEEeCCchHhh----------hhccHHHHHHHHHHhccCCCCCeEEEecCC
Confidence 345777 46677777765 3444467777764332 222244444333333311 13789999988
Q ss_pred CCCCCH----HHHHHHHH-HHHH-------cCcccEEe-cCC-CC-HHHHHHHhhcCCcceee
Q 019203 135 DTSVPI----EETIGEMK-KLVE-------EGKIKYIG-LSE-AS-PGTIRRAHAVHPITAVQ 182 (344)
Q Consensus 135 ~~~~~~----~e~~~~L~-~l~~-------~G~ir~iG-vs~-~~-~~~l~~~~~~~~~~~~q 182 (344)
.-.... +.++++|- .+.. .++|--|| ..+ .+ .+.++++++...+.++.
T Consensus 130 gf~gs~~~G~~~a~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~~~ 192 (435)
T cd01974 130 SFVGSHITGYDNMVKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDYTI 192 (435)
T ss_pred CCccCHHHHHHHHHHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCEEE
Confidence 655332 23344443 2222 23455555 222 22 57788888877666654
No 72
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=58.34 E-value=1.4e+02 Score=26.82 Aligned_cols=105 Identities=12% Similarity=0.002 Sum_probs=62.6
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhcCCcceeec
Q 019203 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAVQM 183 (344)
Q Consensus 104 ~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~ 183 (344)
..+++.+.+.+++.++ -|.|+||+-. .|......++.-+.+..+++.-. .-|.+-++.++.++++++...=..+-.
T Consensus 22 ~~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~~~~~~ee~~r~v~~i~~~~~-~piSIDT~~~~v~e~aL~~~~G~~iIN 97 (252)
T cd00740 22 AEDYDEALDVARQQVE-GGAQILDLNV--DYGGLDGVSAMKWLLNLLATEPT-VPLMLDSTNWEVIEAGLKCCQGKCVVN 97 (252)
T ss_pred cCCHHHHHHHHHHHHH-CCCCEEEECC--CCCCCCHHHHHHHHHHHHHHhcC-CcEEeeCCcHHHHHHHHhhCCCCcEEE
Confidence 3567777777777765 5999999975 33322222233333333332212 237788899999999988621122334
Q ss_pred ccccccc-chHhhHHHHHHHhCCceeeccc
Q 019203 184 EWSLWTR-DIEEEIIPLCRELGIGIVPYSP 212 (344)
Q Consensus 184 ~~n~l~~-~~~~~l~~~~~~~gi~v~a~sp 212 (344)
..+.... .....+++.+++.|..++....
T Consensus 98 sIs~~~~~e~~~~~~~~~~~~~~~vV~m~~ 127 (252)
T cd00740 98 SINLEDGEERFLKVARLAKEHGAAVVVLAF 127 (252)
T ss_pred eCCCCCCccccHHHHHHHHHhCCCEEEecc
Confidence 4444321 1124678889999999888654
No 73
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=58.18 E-value=59 Score=33.38 Aligned_cols=70 Identities=13% Similarity=0.118 Sum_probs=49.1
Q ss_pred HhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEEecC-CCCHHHHHHHhhcCCcceeeccccc
Q 019203 118 LKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPGTIRRAHAVHPITAVQMEWSL 187 (344)
Q Consensus 118 L~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~n~ 187 (344)
...+|+|++-+++..........+.+...+.+......++.+||- |.+++.+.++.+...++++|++-+.
T Consensus 19 a~~~gaD~iGfIf~~~SpR~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~~~ld~vQLHG~e 89 (610)
T PRK13803 19 AVDMLPDFIGFIFYEKSPRFVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKKNGIDFVQLHGAE 89 (610)
T ss_pred HHHcCCCEEEEEecCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCCC
Confidence 355899999998666544555555523333333322357789995 7789999999999999999997654
No 74
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=58.12 E-value=1.6e+02 Score=27.37 Aligned_cols=149 Identities=15% Similarity=0.154 Sum_probs=82.5
Q ss_pred CCHHHHHHHHHHHHHcCCCccccccccCCCc------HHHHHHHHHhcC-CCCCeEEEeccCcCCCCCCccccCCChHHH
Q 019203 38 VSEEDGITMIKHAFSKGITFFDTADVYGQNA------NEVLLGKALKQL-PREKIQVATKFGIAGIGVAGVIVKGAPDYV 110 (344)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~------sE~~lg~~l~~~-~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i 110 (344)
.+.+++.++++.+.+.|++.+.-. | |+ -.+++.. +++. ....+.|+|-... +
T Consensus 49 ls~eei~~~i~~~~~~gi~~I~~t---G-GEPll~~~l~~li~~-i~~~~~~~~i~itTNG~l----------------l 107 (331)
T PRK00164 49 LSLEEIERLVRAFVALGVRKVRLT---G-GEPLLRKDLEDIIAA-LAALPGIRDLALTTNGYL----------------L 107 (331)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE---C-CCCcCccCHHHHHHH-HHhcCCCceEEEEcCchh----------------H
Confidence 577889999999999999877643 2 21 2222222 2322 1235667666310 1
Q ss_pred HHHHHHHHhhcCCCceeEEEecCCCC--------CCCHHHHHHHHHHHHHcCc----ccEEecCCCCHHHHHHHhhc---
Q 019203 111 RSCCEASLKRLDVDYIDLYYQHRVDT--------SVPIEETIGEMKKLVEEGK----IKYIGLSEASPGTIRRAHAV--- 175 (344)
Q Consensus 111 ~~~~~~sL~~Lg~d~iDl~~lh~~~~--------~~~~~e~~~~L~~l~~~G~----ir~iGvs~~~~~~l~~~~~~--- 175 (344)
.+.+ ..|...|++.|- +-||..++ ...++.++++++.+++.|. |..+.+...+.+++.++.+.
T Consensus 108 ~~~~-~~L~~agl~~i~-ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~ 185 (331)
T PRK00164 108 ARRA-AALKDAGLDRVN-VSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKD 185 (331)
T ss_pred HHHH-HHHHHcCCCEEE-EEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHh
Confidence 1222 345556665543 44555433 1357899999999999885 33444444455555544443
Q ss_pred CCcceeeccccccccc---------hHhhHHHHHHHhCCceee
Q 019203 176 HPITAVQMEWSLWTRD---------IEEEIIPLCRELGIGIVP 209 (344)
Q Consensus 176 ~~~~~~q~~~n~l~~~---------~~~~l~~~~~~~gi~v~a 209 (344)
.++.+.-++|.++... ...++++..++.|+.+..
T Consensus 186 ~gv~v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 228 (331)
T PRK00164 186 RGIQLRFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTLQP 228 (331)
T ss_pred CCCeEEEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCcccc
Confidence 4444444444443321 014677777777765444
No 75
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=57.96 E-value=1.5e+02 Score=26.89 Aligned_cols=105 Identities=12% Similarity=0.182 Sum_probs=62.8
Q ss_pred cCCChHHHHHHHHHHHhhcCCCceeEEEecCCCCCC------CHHHHHHHHHHHHHcCcccEEecCCCC---HHHHHHHh
Q 019203 103 VKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSV------PIEETIGEMKKLVEEGKIKYIGLSEAS---PGTIRRAH 173 (344)
Q Consensus 103 ~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~------~~~e~~~~L~~l~~~G~ir~iGvs~~~---~~~l~~~~ 173 (344)
..++.+...+-+ +.|.++|+++|++-+........ .-.+.++.+..+.+ +..+..+++... .+.+..+.
T Consensus 15 ~~f~~~~~~~ia-~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~a~ 92 (266)
T cd07944 15 WDFGDEFVKAIY-RALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDIDLLEPAS 92 (266)
T ss_pred ccCCHHHHHHHH-HHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc-cCCEEEEEECCCCCCHHHHHHHh
Confidence 457777665544 56999999999998766543210 11456666666553 346666665443 45555544
Q ss_pred hcCCcceeeccccccccchHhhHHHHHHHhCCceeec
Q 019203 174 AVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPY 210 (344)
Q Consensus 174 ~~~~~~~~q~~~n~l~~~~~~~l~~~~~~~gi~v~a~ 210 (344)
+ ..++.+.+.+..-.-+.-.+.+++++++|+.|...
T Consensus 93 ~-~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~ 128 (266)
T cd07944 93 G-SVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFN 128 (266)
T ss_pred c-CCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEE
Confidence 3 34555555443322222367899999999876643
No 76
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=57.69 E-value=33 Score=33.76 Aligned_cols=66 Identities=17% Similarity=0.183 Sum_probs=46.7
Q ss_pred HhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEEecC-CCCHHHHHHHhhcCCcceeeccccc
Q 019203 118 LKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPGTIRRAHAVHPITAVQMEWSL 187 (344)
Q Consensus 118 L~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~n~ 187 (344)
...+|+|++-+.+........+.+.+-+....+. ++.+||- |-+++.+.++.+..+++++|++-+.
T Consensus 273 a~~~GaD~lGfIf~~~SpR~V~~~~a~~i~~~l~----v~~VgVfv~~~~~~i~~i~~~~~lD~vQLHG~e 339 (454)
T PRK09427 273 AYDAGAVYGGLIFVEKSPRYVSLEQAQEIIAAAP----LRYVGVFRNADIEDIVDIAKQLSLAAVQLHGDE 339 (454)
T ss_pred HHhCCCCEEeeEeCCCCCCCCCHHHHHHHHHhCC----CCEEEEEeCCCHHHHHHHHHHcCCCEEEeCCCC
Confidence 4568999999875443333444444433333332 8899997 7789999999999999999998754
No 77
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=57.52 E-value=84 Score=28.11 Aligned_cols=112 Identities=22% Similarity=0.232 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHHHcCCCccccccccCC----------------C--cHHHHHHHHHhcCCCCCeEEEeccCcCCCCCC
Q 019203 38 VSEEDGITMIKHAFSKGITFFDTADVYGQ----------------N--ANEVLLGKALKQLPREKIQVATKFGIAGIGVA 99 (344)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~----------------g--~sE~~lg~~l~~~~r~~~~i~tK~~~~~~~~~ 99 (344)
.+.++-.++.++|-+.||.|+=|.-.-.. + .+-.+|-+.-+ ....++|+|=.
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~--tgkPvIlSTG~-------- 122 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYIAK--TGKPVILSTGM-------- 122 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHT--T-S-EEEE-TT--------
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHHHH--hCCcEEEECCC--------
Confidence 47788999999999999999877632210 0 01222222222 34556666653
Q ss_pred ccccCCChHHHHHHHHHHHhhcCCCceeEEEecCCCCC-CCHHH-HHHHHHHHHHcCcccEEecCCCCHHH
Q 019203 100 GVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS-VPIEE-TIGEMKKLVEEGKIKYIGLSEASPGT 168 (344)
Q Consensus 100 ~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~-~~~~e-~~~~L~~l~~~G~ir~iGvs~~~~~~ 168 (344)
.+.+.|+++++...++-+ -++.++|+.... .+.++ -+..+..|++.=- --||+|+|+...
T Consensus 123 -----stl~EI~~Av~~~~~~~~---~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~g~ 184 (241)
T PF03102_consen 123 -----STLEEIERAVEVLREAGN---EDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG-VPVGYSDHTDGI 184 (241)
T ss_dssp -------HHHHHHHHHHHHHHCT-----EEEEEE-SSSS--GGG--TTHHHHHHHHST-SEEEEEE-SSSS
T ss_pred -----CCHHHHHHHHHHHHhcCC---CCEEEEecCCCCCCChHHcChHHHHHHHHhcC-CCEEeCCCCCCc
Confidence 457778777775544443 689999998653 33443 3666777775444 577999997753
No 78
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=57.37 E-value=60 Score=30.77 Aligned_cols=71 Identities=11% Similarity=-0.047 Sum_probs=53.4
Q ss_pred HHHHHHHHHHcCccc-EEecCCCCHHHHHHHhhcCCcceeeccccccccc-hHhhHHHHHHHhCCceeecccC
Q 019203 143 TIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYSPL 213 (344)
Q Consensus 143 ~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~l~~~-~~~~l~~~~~~~gi~v~a~spl 213 (344)
-++.+.+|++...+. ..|=|-++...+..+++...++++|+.....-.- ....+.+.|+.+|+.++.++..
T Consensus 202 d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~ 274 (361)
T cd03322 202 NQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLIDYIRTTVSHAGGITPARKIADLASLYGVRTGWHGPT 274 (361)
T ss_pred cHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeeccCCC
Confidence 366777788777665 6666777889999998888899999977653321 1268999999999999876543
No 79
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=56.53 E-value=1.3e+02 Score=26.63 Aligned_cols=85 Identities=12% Similarity=0.030 Sum_probs=48.2
Q ss_pred HHHhhcCCCceeEEEecCCCCCCCH-HHHHHHHHHHHHcCcccEEecCCC-CHHHHHHHhhcCCcceeeccccccccch-
Q 019203 116 ASLKRLDVDYIDLYYQHRVDTSVPI-EETIGEMKKLVEEGKIKYIGLSEA-SPGTIRRAHAVHPITAVQMEWSLWTRDI- 192 (344)
Q Consensus 116 ~sL~~Lg~d~iDl~~lh~~~~~~~~-~e~~~~L~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q~~~n~l~~~~- 192 (344)
+.++.+|+ |.+.+|..+..... .--++.+.++++.-.+.-|..... +++.+.++++....+.+++---++....
T Consensus 156 ~~l~~~G~---d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~~~~ 232 (243)
T cd04731 156 KEVEELGA---GEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFGEYT 232 (243)
T ss_pred HHHHHCCC---CEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcCCCC
Confidence 44566775 55666654432111 113566677776666777766654 6788888888766666666333322221
Q ss_pred HhhHHHHHHHh
Q 019203 193 EEEIIPLCREL 203 (344)
Q Consensus 193 ~~~l~~~~~~~ 203 (344)
..++..+|+++
T Consensus 233 ~~~~~~~~~~~ 243 (243)
T cd04731 233 IAELKEYLAER 243 (243)
T ss_pred HHHHHHHHhhC
Confidence 24566666653
No 80
>PRK06424 transcription factor; Provisional
Probab=56.21 E-value=31 Score=28.23 Aligned_cols=110 Identities=14% Similarity=0.029 Sum_probs=52.1
Q ss_pred hhHHHHHHHhCCceeec---ccCccc--ccCCCCC--CCCCCCCcccccccCCcCcchhhhHHHHHHHHHHHHHcCCCHH
Q 019203 194 EEIIPLCRELGIGIVPY---SPLGRG--FFGGKAV--VENVPADSFLHFLPRFKGENLDRNKSIYFRIGNLAKKYNCTSA 266 (344)
Q Consensus 194 ~~l~~~~~~~gi~v~a~---spl~~G--~L~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~a 266 (344)
..+-+.|.+.|..|..+ +|...- .-..... .........++..+ +.....+.....-..++.+.++.|+|..
T Consensus 23 l~vC~~Ca~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~g~~Ir~lRe~~GLSQ~ 101 (144)
T PRK06424 23 LNVCDDCAKFGTPVIEHNKFKEVKEDIKVKLPEKKIIVPTYKKAYKKYKKK-ASDEDLDIVEDYAELVKNARERLSMSQA 101 (144)
T ss_pred eehhHHHHHcCCcccccCCCCcccccccccCccccccccccccCCCCccCc-ccHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 56888999999999998 566421 1000000 00000000011111 1111112223455677778888899999
Q ss_pred HHHHHHHHhCCCCeEEecCCC--CHHHHHHHHhccCCCCC
Q 019203 267 QLALAWVLGQGDDVVPIPGTT--KMKNLDDNIDSLRIKLT 304 (344)
Q Consensus 267 qlal~~~l~~~~v~~vi~G~~--~~~~l~enl~a~~~~Lt 304 (344)
+||-+--.++..++..--|-+ +.+.+....++++..|+
T Consensus 102 eLA~~iGvs~stIskiE~G~~~Ps~~~l~kLa~~Lgvsl~ 141 (144)
T PRK06424 102 DLAAKIFERKNVIASIERGDLLPDIKTARKLEKILGITLI 141 (144)
T ss_pred HHHHHhCCCHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCC
Confidence 988655443322222222222 33344444444444443
No 81
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=55.11 E-value=1.6e+02 Score=26.46 Aligned_cols=157 Identities=17% Similarity=0.128 Sum_probs=84.3
Q ss_pred CCHHHHHHHHHHHHHcCCCccccccc-----------cCCCcHHHHHHHHHhcCCCCCeEEEeccCcCCCCCCccccCCC
Q 019203 38 VSEEDGITMIKHAFSKGITFFDTADV-----------YGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGA 106 (344)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~Dta~~-----------Yg~g~sE~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~ 106 (344)
.+.++..++++...+.||..++.+.. |-.-..++.+.+..+..+..++.+..-.+ . ..
T Consensus 19 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~--~---------~~ 87 (263)
T cd07943 19 FTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPG--I---------GT 87 (263)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCC--c---------cC
Confidence 47788999999999999999998721 11112455665554433444443222110 0 11
Q ss_pred hHHHHHHHHHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEEecC---CCCHHHHHHHhhc---CCcce
Q 019203 107 PDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS---EASPGTIRRAHAV---HPITA 180 (344)
Q Consensus 107 ~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~iGvs---~~~~~~l~~~~~~---~~~~~ 180 (344)
.+. +++.++ .|++.+-++.-- .......+.++..++.|.--.+.++ .++++.+.++.+. .+.+.
T Consensus 88 ~~~----i~~a~~-~g~~~iri~~~~-----s~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~ 157 (263)
T cd07943 88 VDD----LKMAAD-LGVDVVRVATHC-----TEADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADC 157 (263)
T ss_pred HHH----HHHHHH-cCCCEEEEEech-----hhHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCE
Confidence 233 444443 366665554311 1345677788888888875555542 2455555443332 34455
Q ss_pred eecc--ccccccchHhhHHHHHHHh----CCceeecccCcc
Q 019203 181 VQME--WSLWTRDIEEEIIPLCREL----GIGIVPYSPLGR 215 (344)
Q Consensus 181 ~q~~--~n~l~~~~~~~l~~~~~~~----gi~v~a~spl~~ 215 (344)
+.+. +..+.+..-.+++...+++ -++++++.-++.
T Consensus 158 i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~Gl 198 (263)
T cd07943 158 VYVTDSAGAMLPDDVRERVRALREALDPTPVGFHGHNNLGL 198 (263)
T ss_pred EEEcCCCCCcCHHHHHHHHHHHHHhCCCceEEEEecCCcch
Confidence 4443 3334443335677776665 245555555543
No 82
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=54.90 E-value=1.1e+02 Score=30.58 Aligned_cols=151 Identities=11% Similarity=0.054 Sum_probs=78.0
Q ss_pred CHHHHHHHHHHHHH-cCCCcccccccc-CC--CcHHHHHHHHHhcC-CCCCeEEEeccCcCCCCCCccccCCChHHHHHH
Q 019203 39 SEEDGITMIKHAFS-KGITFFDTADVY-GQ--NANEVLLGKALKQL-PREKIQVATKFGIAGIGVAGVIVKGAPDYVRSC 113 (344)
Q Consensus 39 ~~~~~~~~l~~A~~-~Gin~~Dta~~Y-g~--g~sE~~lg~~l~~~-~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~ 113 (344)
+.+...+-|+...+ .|+++|.-++.- .. .+.++++.+.+++. ..-.+.+.|.+-.. ..+.+
T Consensus 223 s~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i---------~~d~e----- 288 (497)
T TIGR02026 223 DPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDI---------VRDAD----- 288 (497)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccc---------cCCHH-----
Confidence 56666666776664 799987654422 11 11223333333321 11112233332100 01222
Q ss_pred HHHHHhhcCCCceeE-------EEecCCCCCCCHHHHHHHHHHHHHcCcccE----EecCCCCHHHHHHHhhc---CCcc
Q 019203 114 CEASLKRLDVDYIDL-------YYQHRVDTSVPIEETIGEMKKLVEEGKIKY----IGLSEASPGTIRRAHAV---HPIT 179 (344)
Q Consensus 114 ~~~sL~~Lg~d~iDl-------~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~----iGvs~~~~~~l~~~~~~---~~~~ 179 (344)
+=+.+++.|+.++-+ -.|.........++..++++.+++.|..-. +|+-+.+.+.+++.++. .+++
T Consensus 289 ll~~l~~aG~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~~~ 368 (497)
T TIGR02026 289 ILHLYRRAGLVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDWDPD 368 (497)
T ss_pred HHHHHHHhCCcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHcCCC
Confidence 223455556544333 233333334456788899999999986433 45567777777665443 3444
Q ss_pred eeeccccccccchHhhHHHHHHHhCC
Q 019203 180 AVQMEWSLWTRDIEEEIIPLCRELGI 205 (344)
Q Consensus 180 ~~q~~~n~l~~~~~~~l~~~~~~~gi 205 (344)
. +.++++.+-+..++.+.+++.+.
T Consensus 369 ~--~~~~~~tP~PGT~l~~~~~~~~~ 392 (497)
T TIGR02026 369 Q--ANWLMYTPWPFTSLFGELSDRVE 392 (497)
T ss_pred c--eEEEEecCCCCcHHHHHHHhhcc
Confidence 3 34455555555678888877754
No 83
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=54.61 E-value=1.1e+02 Score=29.75 Aligned_cols=60 Identities=17% Similarity=0.209 Sum_probs=37.8
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEEecCCCCC-----------CC-HH---HHHHHHH-HHHHcCcccEEecCCCCH
Q 019203 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS-----------VP-IE---ETIGEMK-KLVEEGKIKYIGLSEASP 166 (344)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~-----------~~-~~---e~~~~L~-~l~~~G~ir~iGvs~~~~ 166 (344)
-+.+.+.+.+++.+ .|+.|+|.+|.+-..... .+ .+ +.++... .|.+.|- +++|+|||..
T Consensus 201 QT~~~~~~~l~~a~-~l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~yeisnfa~ 276 (416)
T COG0635 201 QTLESLKEDLEQAL-ELGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGY-RQYEISNFAK 276 (416)
T ss_pred CCHHHHHHHHHHHH-hCCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCC-cEEeechhcC
Confidence 46677777777554 578999999966443211 11 12 3455444 4455565 9999999866
No 84
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=54.58 E-value=1.6e+02 Score=26.35 Aligned_cols=102 Identities=16% Similarity=0.137 Sum_probs=58.9
Q ss_pred HHHHHHcCcccEEec--CCCCHHHHHHHhhcCCcce--eeccccccccchHhhHHHHHHHhCCceeecccCcccccCCCC
Q 019203 147 MKKLVEEGKIKYIGL--SEASPGTIRRAHAVHPITA--VQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKA 222 (344)
Q Consensus 147 L~~l~~~G~ir~iGv--s~~~~~~l~~~~~~~~~~~--~q~~~n~l~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~g~~ 222 (344)
|.+..++|+. .+|+ ..-++..++. .....+|+ +-++.++++.+....++..++..|+.++.+-|-.
T Consensus 3 lk~~l~~g~~-~~g~~~~~~~p~~~e~-~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~~-------- 72 (249)
T TIGR02311 3 FKQALKEGQP-QIGLWLGLADPYAAEI-CAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAIG-------- 72 (249)
T ss_pred HHHHHHCCCc-eEEEEEeCCCcHHHHH-HHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCCC--------
Confidence 3444556875 3444 3334444444 44444555 4557777765544557777777788777754332
Q ss_pred CCCCCCCCcccccccCCcCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHhccCC
Q 019203 223 VVENVPADSFLHFLPRFKGENLDRNKSIYFRIGNLAKKYNCTSAQLALAWVLGQGDDVVPIPGTTKMKNLDDNIDSLRI 301 (344)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~aqlal~~~l~~~~v~~vi~G~~~~~~l~enl~a~~~ 301 (344)
++. -++.++..+.-..++|-..+++++++.+++..+
T Consensus 73 -----------------------------------------~~~--~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~y 108 (249)
T TIGR02311 73 -----------------------------------------DPV--LIKQLLDIGAQTLLVPMIETAEQAEAAVAATRY 108 (249)
T ss_pred -----------------------------------------CHH--HHHHHhCCCCCEEEecCcCCHHHHHHHHHHcCC
Confidence 111 345566666666667777777777777766554
No 85
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=54.18 E-value=1.8e+02 Score=26.70 Aligned_cols=154 Identities=13% Similarity=0.076 Sum_probs=90.4
Q ss_pred CHHHHHHHHHHHHHcC-CCcccc---cccc-----CCCcHHHHHHHHHhcCCC-CCeEEEeccCcCCCCCCccccCCChH
Q 019203 39 SEEDGITMIKHAFSKG-ITFFDT---ADVY-----GQNANEVLLGKALKQLPR-EKIQVATKFGIAGIGVAGVIVKGAPD 108 (344)
Q Consensus 39 ~~~~~~~~l~~A~~~G-in~~Dt---a~~Y-----g~g~sE~~lg~~l~~~~r-~~~~i~tK~~~~~~~~~~~~~~~~~~ 108 (344)
+.++..+..+.+-+.| +..||- +++. ..+...+.+-+.++..+. -++-|..|+.+.. +
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~------------~ 169 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNV------------T 169 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCc------------h
Confidence 5677778888888888 888876 2221 122356677776665322 2677889986321 1
Q ss_pred HHHHHHHHHHhhcCCCceeEEE-ecCCC--CCC----------CH------HHHHHHHHHHHHcCcccEEecCCC-CHHH
Q 019203 109 YVRSCCEASLKRLDVDYIDLYY-QHRVD--TSV----------PI------EETIGEMKKLVEEGKIKYIGLSEA-SPGT 168 (344)
Q Consensus 109 ~i~~~~~~sL~~Lg~d~iDl~~-lh~~~--~~~----------~~------~e~~~~L~~l~~~G~ir~iGvs~~-~~~~ 168 (344)
.+. .+=+.|+..|+|.|++.- ++... ... .+ .-.++.+.++++.=.+--||+... +++.
T Consensus 170 ~~~-~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~d 248 (301)
T PRK07259 170 DIV-EIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAED 248 (301)
T ss_pred hHH-HHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHH
Confidence 232 233457788988876631 11110 000 00 114666777777657889999886 7888
Q ss_pred HHHHhhcCCcceeeccccccc-cc----hHhhHHHHHHHhCCc
Q 019203 169 IRRAHAVHPITAVQMEWSLWT-RD----IEEEIIPLCRELGIG 206 (344)
Q Consensus 169 l~~~~~~~~~~~~q~~~n~l~-~~----~~~~l~~~~~~~gi~ 206 (344)
+.+++... .+.+|+-=-++. +. ...++-.++.++|..
T Consensus 249 a~~~l~aG-Ad~V~igr~ll~~P~~~~~i~~~l~~~~~~~g~~ 290 (301)
T PRK07259 249 AIEFIMAG-ASAVQVGTANFYDPYAFPKIIEGLEAYLDKYGIK 290 (301)
T ss_pred HHHHHHcC-CCceeEcHHHhcCcHHHHHHHHHHHHHHHHcCCC
Confidence 88888754 677776322222 11 125666777777753
No 86
>PRK12928 lipoyl synthase; Provisional
Probab=53.66 E-value=1.4e+02 Score=27.37 Aligned_cols=77 Identities=18% Similarity=0.246 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHHHHHcC---ccc---EEecCCCCHHHHHHHhh---cCCcceeec-cccc-------ccc----chHhhH
Q 019203 138 VPIEETIGEMKKLVEEG---KIK---YIGLSEASPGTIRRAHA---VHPITAVQM-EWSL-------WTR----DIEEEI 196 (344)
Q Consensus 138 ~~~~e~~~~L~~l~~~G---~ir---~iGvs~~~~~~l~~~~~---~~~~~~~q~-~~n~-------l~~----~~~~~l 196 (344)
...++.++.++.+++.| .++ -+|+ .-+.+++.+.+. ..+++.+.+ +|.. +.+ .....+
T Consensus 185 ~t~e~~le~l~~ak~~gp~i~~~s~iIvG~-GET~ed~~etl~~Lrel~~d~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~ 263 (290)
T PRK12928 185 ADYQRSLDLLARAKELAPDIPTKSGLMLGL-GETEDEVIETLRDLRAVGCDRLTIGQYLRPSLAHLPVQRYWTPEEFEAL 263 (290)
T ss_pred CCHHHHHHHHHHHHHhCCCceecccEEEeC-CCCHHHHHHHHHHHHhcCCCEEEEEcCCCCCccCCceeeccCHHHHHHH
Confidence 35678889999999988 444 3466 556666554433 355565544 4543 111 112567
Q ss_pred HHHHHHhCCceeecccCcc
Q 019203 197 IPLCRELGIGIVPYSPLGR 215 (344)
Q Consensus 197 ~~~~~~~gi~v~a~spl~~ 215 (344)
-..+.+.|...++.+||-.
T Consensus 264 ~~~~~~~g~~~~~~~p~~r 282 (290)
T PRK12928 264 GQIARELGFSHVRSGPLVR 282 (290)
T ss_pred HHHHHHcCCceeEecCccc
Confidence 7888888999999999863
No 87
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=53.22 E-value=1e+02 Score=29.18 Aligned_cols=99 Identities=8% Similarity=-0.018 Sum_probs=57.9
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEecCCCCC---CCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhcCCcce
Q 019203 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS---VPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITA 180 (344)
Q Consensus 104 ~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~---~~~~e~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~ 180 (344)
.++.+. +..+=+.|.++|+++|++-..-+|..- .+.+++++.+.. ...++..++. .....++++++... +.
T Consensus 64 ~~s~e~-Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~~---~~~~~~~~l~-~n~~die~A~~~g~-~~ 137 (347)
T PLN02746 64 IVPTSV-KVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVRN---LEGARFPVLT-PNLKGFEAAIAAGA-KE 137 (347)
T ss_pred CCCHHH-HHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHHh---ccCCceeEEc-CCHHHHHHHHHcCc-CE
Confidence 355554 445555699999999999865555322 133455555543 2335555554 47788888877632 22
Q ss_pred eecc---------ccccccchH-----hhHHHHHHHhCCcee
Q 019203 181 VQME---------WSLWTRDIE-----EEIIPLCRELGIGIV 208 (344)
Q Consensus 181 ~q~~---------~n~l~~~~~-----~~l~~~~~~~gi~v~ 208 (344)
+.+. .|+-....+ .+++++++++|+.|.
T Consensus 138 v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~ 179 (347)
T PLN02746 138 VAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVR 179 (347)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 2222 222111111 478999999999885
No 88
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=52.75 E-value=56 Score=30.45 Aligned_cols=76 Identities=14% Similarity=0.136 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHcCccc-EEecCCCCHHHHHHHhhcCCcceeeccccccccc-hHhhHHHHHHHhCCceeecccCcccc
Q 019203 142 ETIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYSPLGRGF 217 (344)
Q Consensus 142 e~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~l~~~-~~~~l~~~~~~~gi~v~a~spl~~G~ 217 (344)
+.++.+.+|++...+. ..|=|.++.+.+..+++...++++|+.....-.- ....+...|+.+|+.++..+.+..|+
T Consensus 210 ~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~~~~~~~A~~~gi~~~~~~~~es~i 287 (324)
T TIGR01928 210 DDLSMLDELAKGTITPICLDESITSLDDARNLIELGNVKVINIKPGRLGGLTEVQKAIETCREHGAKVWIGGMLETGI 287 (324)
T ss_pred hHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCCEEEeCcchhcCHHHHHHHHHHHHHcCCeEEEcceEcccH
Confidence 3457788888776655 5566778899999999988899999877654321 12678999999999999876665544
No 89
>smart00642 Aamy Alpha-amylase domain.
Probab=52.73 E-value=29 Score=29.01 Aligned_cols=21 Identities=14% Similarity=0.298 Sum_probs=17.9
Q ss_pred hhHHHHHHHhCCceeecccCc
Q 019203 194 EEIIPLCRELGIGIVPYSPLG 214 (344)
Q Consensus 194 ~~l~~~~~~~gi~v~a~spl~ 214 (344)
..+++.|+++||.|+.=-++.
T Consensus 73 ~~lv~~~h~~Gi~vilD~V~N 93 (166)
T smart00642 73 KELVDAAHARGIKVILDVVIN 93 (166)
T ss_pred HHHHHHHHHCCCEEEEEECCC
Confidence 789999999999999765654
No 90
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=52.34 E-value=2.3e+02 Score=27.51 Aligned_cols=86 Identities=13% Similarity=-0.033 Sum_probs=60.5
Q ss_pred eEEEecCCCCCCCHHHHHHHHHHHHHc------CcccEEecCCCCHHHHHHHhhcCCcceeeccccccccc-hHhhHHHH
Q 019203 127 DLYYQHRVDTSVPIEETIGEMKKLVEE------GKIKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRD-IEEEIIPL 199 (344)
Q Consensus 127 Dl~~lh~~~~~~~~~e~~~~L~~l~~~------G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~l~~~-~~~~l~~~ 199 (344)
++ ++-.|-+..+.++.++.+.+|++. ..=-..+=+-++.+.+.++++..-.+++|+..+-.--- ...++..+
T Consensus 265 ~~-~iEqPv~~~d~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a~d~v~iK~~k~GGIt~a~kia~l 343 (408)
T TIGR01502 265 HL-RIEGPMDVGSRQAQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKAGHMVQIKTPDVGGVNNIARAIMY 343 (408)
T ss_pred Ce-EEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHH
Confidence 44 677765544434567777777765 22223444556889999999988889999987754321 12689999
Q ss_pred HHHhCCceeecccC
Q 019203 200 CRELGIGIVPYSPL 213 (344)
Q Consensus 200 ~~~~gi~v~a~spl 213 (344)
|+.+||.++..+..
T Consensus 344 A~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 344 CKANGMGAYVGGTC 357 (408)
T ss_pred HHHcCCEEEEeCCC
Confidence 99999999987665
No 91
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=52.07 E-value=99 Score=29.55 Aligned_cols=91 Identities=12% Similarity=0.203 Sum_probs=60.4
Q ss_pred eEEEecCCCCC-----------CCHHHHHHHHHHHHHcCc----ccEEecC--CCCHHHHHHHhhc---C------Ccce
Q 019203 127 DLYYQHRVDTS-----------VPIEETIGEMKKLVEEGK----IKYIGLS--EASPGTIRRAHAV---H------PITA 180 (344)
Q Consensus 127 Dl~~lh~~~~~-----------~~~~e~~~~L~~l~~~G~----ir~iGvs--~~~~~~l~~~~~~---~------~~~~ 180 (344)
=.+-||.|++. -+++++++++.+..++.. +-|+=+. |.+.++..++.+. . +..+
T Consensus 230 LAiSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~V 309 (371)
T PRK14461 230 LAISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHV 309 (371)
T ss_pred EEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEE
Confidence 45789999753 257899999998875443 2233333 4566666555443 4 5678
Q ss_pred eeccccccccc----h-H---hhHHHHHHHhCCceeecccCcccc
Q 019203 181 VQMEWSLWTRD----I-E---EEIIPLCRELGIGIVPYSPLGRGF 217 (344)
Q Consensus 181 ~q~~~n~l~~~----~-~---~~l~~~~~~~gi~v~a~spl~~G~ 217 (344)
+-++||+.... + . ....+..+++||.+......+.-+
T Consensus 310 NLIp~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~DI 354 (371)
T PRK14461 310 NLIPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGVEI 354 (371)
T ss_pred EEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCcCh
Confidence 89999986431 1 1 456666788999999988876444
No 92
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=51.67 E-value=1.5e+02 Score=26.19 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=26.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCccccccccCCCc
Q 019203 34 YSSPVSEEDGITMIKHAFSKGITFFDTADVYGQNA 68 (344)
Q Consensus 34 ~~~~~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~ 68 (344)
.|.. +.++..++++.|.+.||+-+=..++|-.|+
T Consensus 14 DGp~-s~eesl~ml~~A~~qGvt~iVaTsHh~~g~ 47 (254)
T COG4464 14 DGPK-SLEESLAMLREAVRQGVTKIVATSHHLHGR 47 (254)
T ss_pred CCCC-cHHHHHHHHHHHHHcCceEEeecccccCCc
Confidence 3443 789999999999999999776666665553
No 93
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=51.60 E-value=31 Score=27.70 Aligned_cols=25 Identities=32% Similarity=0.575 Sum_probs=21.1
Q ss_pred cchHhhHHHHHHHhCCceeecccCc
Q 019203 190 RDIEEEIIPLCRELGIGIVPYSPLG 214 (344)
Q Consensus 190 ~~~~~~l~~~~~~~gi~v~a~spl~ 214 (344)
++...++++.|+++||.|++|-.+.
T Consensus 43 ~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 43 RDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred cCHHHHHHHHHHHCCCEEEEEEeee
Confidence 3444789999999999999998875
No 94
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=51.42 E-value=2.3e+02 Score=27.25 Aligned_cols=149 Identities=12% Similarity=0.072 Sum_probs=89.3
Q ss_pred CHHHHHHHHHHHHH-cCCCccccccccCCCc---HHHHHHHHHhcCCCCCeEEEeccCcCCCCCCccccCCChHHHHHHH
Q 019203 39 SEEDGITMIKHAFS-KGITFFDTADVYGQNA---NEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCC 114 (344)
Q Consensus 39 ~~~~~~~~l~~A~~-~Gin~~Dta~~Yg~g~---sE~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~ 114 (344)
+.++..+.++.+++ .|++.|=.-- |... ..+.+. ++++.- .++.|..-.. ..++.+..
T Consensus 168 ~~e~~~~~a~~~~~~~Gf~~~KiKv--G~~~~~~di~~v~-avRea~-~~~~l~vDaN----------~~w~~~~A---- 229 (395)
T cd03323 168 TPEGVVRLARAAIDRYGFKSFKLKG--GVLPGEEEIEAVK-ALAEAF-PGARLRLDPN----------GAWSLETA---- 229 (395)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEec--CCCCHHHHHHHHH-HHHHhC-CCCcEEEeCC----------CCcCHHHH----
Confidence 45656666667765 6998775421 2111 112222 333311 2344444331 12445443
Q ss_pred HHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCccc-EEecCCCCHHHHHHHhhcCCcceeeccccccccc-h
Q 019203 115 EASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRD-I 192 (344)
Q Consensus 115 ~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~l~~~-~ 192 (344)
.+.++.|. - ++.++-.|-. -++.+.+|++...+- +.|=|-++.+.+..+++...++++|......--- .
T Consensus 230 ~~~~~~l~--~-~l~~iEeP~~------d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~avdil~~d~~~~GGit~ 300 (395)
T cd03323 230 IRLAKELE--G-VLAYLEDPCG------GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNAVDIPLADHHFWGGMRG 300 (395)
T ss_pred HHHHHhcC--c-CCCEEECCCC------CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCCCcEEeeccccccCHHH
Confidence 33444553 2 5556665543 467788888877665 5666667888899999988899999877654321 1
Q ss_pred HhhHHHHHHHhCCceeecccCc
Q 019203 193 EEEIIPLCRELGIGIVPYSPLG 214 (344)
Q Consensus 193 ~~~l~~~~~~~gi~v~a~spl~ 214 (344)
...+...|+.+||.+..++...
T Consensus 301 ~~kia~~A~~~gi~~~~h~~~e 322 (395)
T cd03323 301 SVRVAQVCETWGLGWGMHSNNH 322 (395)
T ss_pred HHHHHHHHHHcCCeEEEecCcc
Confidence 2689999999999999877653
No 95
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=50.63 E-value=98 Score=29.30 Aligned_cols=74 Identities=8% Similarity=0.107 Sum_probs=51.1
Q ss_pred HHHHHHHHHHcCccc-EEecCCCCHHHHHHHhhcCCcceeecccccccc-chHhhHHHHHHHhCCceeecccCccc
Q 019203 143 TIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTR-DIEEEIIPLCRELGIGIVPYSPLGRG 216 (344)
Q Consensus 143 ~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~l~~-~~~~~l~~~~~~~gi~v~a~spl~~G 216 (344)
.++.+.+|.++..+. +.|=+-++.+.+..+++...++++|+.....-. .....+..+|+++|+.++..+-+..+
T Consensus 227 ~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~~~~s~ 302 (365)
T cd03318 227 NLDGLARLRSRNRVPIMADESVSGPADAFELARRGAADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGTMLESS 302 (365)
T ss_pred cHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCCCeEEEeecccCCHHHHHHHHHHHHHcCCceeecCcchhH
Confidence 356677777766555 455555678888888888778888887655422 11267889999999998876444433
No 96
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=50.57 E-value=1.3e+02 Score=26.26 Aligned_cols=99 Identities=16% Similarity=0.267 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcc------cEEecCCC-CHHHHHHHhhcCCccee
Q 019203 109 YVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKI------KYIGLSEA-SPGTIRRAHAVHPITAV 181 (344)
Q Consensus 109 ~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~i------r~iGvs~~-~~~~l~~~~~~~~~~~~ 181 (344)
+....++..-+--.-..|+-+++-..+....-+|-+...++|.+.|.- -+-|+++. +.-+..+......|.++
T Consensus 77 yy~~Ri~aA~~ly~~gKV~~LLlSGDN~~~sYnEp~tM~kdL~~~GVp~~~i~lDyAGFrTLDSvvRA~kVF~~~~ftII 156 (235)
T COG2949 77 YYTYRIDAAIALYKAGKVNYLLLSGDNATVSYNEPRTMRKDLIAAGVPAKNIFLDYAGFRTLDSVVRARKVFGTNDFTII 156 (235)
T ss_pred hHHHHHHHHHHHHhcCCeeEEEEecCCCcccccchHHHHHHHHHcCCCHHHeeecccCccHHHHHHHHHHHcCcCcEEEE
Confidence 445556666555666689999999988888899999999999999973 35566554 22334444444566655
Q ss_pred eccccccccchHhhHHHHHHHhCCceeecccC
Q 019203 182 QMEWSLWTRDIEEEIIPLCRELGIGIVPYSPL 213 (344)
Q Consensus 182 q~~~n~l~~~~~~~l~~~~~~~gi~v~a~spl 213 (344)
--+|+. +..+=.|+.+||.-+++..-
T Consensus 157 tQ~FHc------eRAlfiA~~~gIdAic~~ap 182 (235)
T COG2949 157 TQRFHC------ERALFIARQMGIDAICFAAP 182 (235)
T ss_pred eccccc------HHHHHHHHHhCCceEEecCC
Confidence 444544 45667899999998886544
No 97
>COG0218 Predicted GTPase [General function prediction only]
Probab=49.93 E-value=1.7e+02 Score=25.33 Aligned_cols=101 Identities=16% Similarity=0.019 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHc------CCCccccccccCCCcHHHHHHHHHhcCCCCCeEEEeccCcCCCCCCccccCCChHHHHHH
Q 019203 40 EEDGITMIKHAFSK------GITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSC 113 (344)
Q Consensus 40 ~~~~~~~l~~A~~~------Gin~~Dta~~Yg~g~sE~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~ 113 (344)
.+...+++...++. .+-.+|.-..--. .++.+=++|......=+++.||.- ........+.
T Consensus 90 ~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~--~D~em~~~l~~~~i~~~vv~tK~D-----------Ki~~~~~~k~ 156 (200)
T COG0218 90 KEKWKKLIEEYLEKRANLKGVVLLIDARHPPKD--LDREMIEFLLELGIPVIVVLTKAD-----------KLKKSERNKQ 156 (200)
T ss_pred HHHHHHHHHHHHhhchhheEEEEEEECCCCCcH--HHHHHHHHHHHcCCCeEEEEEccc-----------cCChhHHHHH
Confidence 44556777776653 4556675433322 566777788776777789999962 3456667788
Q ss_pred HHHHHhhcCCCceeE--EEecCCCCCCCHHHHHHHHHHHHHc
Q 019203 114 CEASLKRLDVDYIDL--YYQHRVDTSVPIEETIGEMKKLVEE 153 (344)
Q Consensus 114 ~~~sL~~Lg~d~iDl--~~lh~~~~~~~~~e~~~~L~~l~~~ 153 (344)
+....++|+.+..|- +++.+......+++++..+.+....
T Consensus 157 l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 157 LNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred HHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 899999998777665 5555555556688999888877653
No 98
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=49.73 E-value=1.7e+02 Score=26.02 Aligned_cols=88 Identities=13% Similarity=0.058 Sum_probs=50.4
Q ss_pred HHhhcCCCceeEEEecCCCCCCCH-HHHHHHHHHHHHcCcccEEecCCC-CHHHHHHHhhcCCcceeeccccccccch-H
Q 019203 117 SLKRLDVDYIDLYYQHRVDTSVPI-EETIGEMKKLVEEGKIKYIGLSEA-SPGTIRRAHAVHPITAVQMEWSLWTRDI-E 193 (344)
Q Consensus 117 sL~~Lg~d~iDl~~lh~~~~~~~~-~e~~~~L~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q~~~n~l~~~~-~ 193 (344)
-+..+|+ |-+.+|..+..... .--|+.+.++.+.-.+.-|.-... +.+.+.++.+....+.+.+---+..... .
T Consensus 161 ~~~~~g~---~~ii~~~i~~~g~~~g~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~~ 237 (253)
T PRK02083 161 EVEELGA---GEILLTSMDRDGTKNGYDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEITI 237 (253)
T ss_pred HHHHcCC---CEEEEcCCcCCCCCCCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCCH
Confidence 3456674 55667665432111 112666777776656666666543 6788888777655554444211211111 2
Q ss_pred hhHHHHHHHhCCce
Q 019203 194 EEIIPLCRELGIGI 207 (344)
Q Consensus 194 ~~l~~~~~~~gi~v 207 (344)
.++.+.|++.||.|
T Consensus 238 ~~~~~~~~~~~~~~ 251 (253)
T PRK02083 238 GELKAYLAEQGIPV 251 (253)
T ss_pred HHHHHHHHHCCCcc
Confidence 57889999998875
No 99
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=49.68 E-value=91 Score=25.31 Aligned_cols=62 Identities=8% Similarity=0.159 Sum_probs=44.9
Q ss_pred CCCCeEEEeccCcCCCCCCccccCCChHHHHHHHHHHHhhcC--CCceeEEEecCCCCCCCHHHHHHHHHHHHH
Q 019203 81 PREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLD--VDYIDLYYQHRVDTSVPIEETIGEMKKLVE 152 (344)
Q Consensus 81 ~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg--~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~ 152 (344)
+|=-+.|+-|+|. ...+..|++.+.++.+.+. +...|++++.......++.++...|..+.+
T Consensus 46 ~RlG~sVSKKvg~----------AV~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~~~f~~L~~~l~~~~~ 109 (138)
T PRK00730 46 CKVGITVSKKFGK----------AHQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQPDFLKLLQDFLQQIP 109 (138)
T ss_pred ceEEEEEeccccc----------chhHHHHHHHHHHHHHHhhcccCCceEEEEeccccCCCHHHHHHHHHHHHH
Confidence 4555677777753 2467778888888887663 456899999999877777777777666664
No 100
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=49.50 E-value=2.8e+02 Score=27.66 Aligned_cols=24 Identities=8% Similarity=0.228 Sum_probs=20.4
Q ss_pred CCHHHHHHHHHHHHHcCCCccccc
Q 019203 38 VSEEDGITMIKHAFSKGITFFDTA 61 (344)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~Dta 61 (344)
.+.++..++.+...+.||..|+.+
T Consensus 20 ~s~e~K~~ia~~L~~~GV~~IEvG 43 (494)
T TIGR00973 20 LTVEEKLQIALALERLGVDIIEAG 43 (494)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEE
Confidence 367888899999889999999975
No 101
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=48.69 E-value=83 Score=29.51 Aligned_cols=148 Identities=19% Similarity=0.211 Sum_probs=82.4
Q ss_pred CCCceecCCCCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCC--ccccccccCCCcHHHHHHHHHhcCCCCC
Q 019203 7 QVPRVKLGTQGLEVSKLGFGCMNLSGGYSSPVSEEDGITMIKHAFSKGIT--FFDTADVYGQNANEVLLGKALKQLPREK 84 (344)
Q Consensus 7 ~m~~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin--~~Dta~~Yg~g~sE~~lg~~l~~~~r~~ 84 (344)
||++..++ .|..|-.+|+|. +|. =.++.|-..|.+ .||+++. ..|+.+ +...-+.
T Consensus 173 pLk~~g~~-pG~~vgI~GlGG--LGh------------~aVq~AKAMG~rV~vis~~~~----kkeea~----~~LGAd~ 229 (360)
T KOG0023|consen 173 PLKRSGLG-PGKWVGIVGLGG--LGH------------MAVQYAKAMGMRVTVISTSSK----KKEEAI----KSLGADV 229 (360)
T ss_pred hhHHcCCC-CCcEEEEecCcc--cch------------HHHHHHHHhCcEEEEEeCCch----hHHHHH----HhcCcce
Confidence 57777886 788888888887 554 245555556655 5665431 145443 3323355
Q ss_pred eEEEeccCcCCCCCCccccCCChHHHHHHHHHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEEecCCC
Q 019203 85 IQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA 164 (344)
Q Consensus 85 ~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~iGvs~~ 164 (344)
++++++ +++ +.+++..++.- +++.+--+ ... ..-..+.-|+..|++-.+|+-..
T Consensus 230 fv~~~~---------------d~d-~~~~~~~~~dg-~~~~v~~~------a~~---~~~~~~~~lk~~Gt~V~vg~p~~ 283 (360)
T KOG0023|consen 230 FVDSTE---------------DPD-IMKAIMKTTDG-GIDTVSNL------AEH---ALEPLLGLLKVNGTLVLVGLPEK 283 (360)
T ss_pred eEEecC---------------CHH-HHHHHHHhhcC-cceeeeec------ccc---chHHHHHHhhcCCEEEEEeCcCC
Confidence 555554 233 34444545432 22322211 112 23345677889999999999764
Q ss_pred CHHHHHHHhhcCCcceeeccccccccchH-hhHHHHHHHhCCc
Q 019203 165 SPGTIRRAHAVHPITAVQMEWSLWTRDIE-EEIIPLCRELGIG 206 (344)
Q Consensus 165 ~~~~l~~~~~~~~~~~~q~~~n~l~~~~~-~~l~~~~~~~gi~ 206 (344)
+..+.-.. .-+..+.+..|..-.+.+ +++++||.+++|.
T Consensus 284 -~~~~~~~~--lil~~~~I~GS~vG~~ket~E~Ldf~a~~~ik 323 (360)
T KOG0023|consen 284 -PLKLDTFP--LILGRKSIKGSIVGSRKETQEALDFVARGLIK 323 (360)
T ss_pred -cccccchh--hhcccEEEEeeccccHHHHHHHHHHHHcCCCc
Confidence 22111100 112234555555544433 7899999999876
No 102
>COG1151 6Fe-6S prismane cluster-containing protein [Energy production and conversion]
Probab=48.47 E-value=85 Score=31.56 Aligned_cols=126 Identities=11% Similarity=0.044 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEEec----CCC--CHHHHHHHhhcCCccee
Q 019203 108 DYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGL----SEA--SPGTIRRAHAVHPITAV 181 (344)
Q Consensus 108 ~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~iGv----s~~--~~~~l~~~~~~~~~~~~ 181 (344)
+...+-+++.++..+-.+.+--.+--=-....+.++.+-|.+++++|+||.+.+ ++- ....+....+..+=+++
T Consensus 360 ~~~~~vIe~A~e~~~~r~~~~~~ivvGFs~~~il~a~d~lielI~sGkIKgv~~v~GCd~~~~~~~yvt~~keliprD~l 439 (576)
T COG1151 360 EDFSEVIEMAIENFKNRKSEKHKIVVGFSHESILAAADPLIELIASGKIKGVVVVVGCDGLRSGRHYVTLFKELIPRDIL 439 (576)
T ss_pred hhHHHHHHHHHhccCCcccccceeEEeecHHHHHHHHHHHHHHHhcCCcceEEEEeeCCCCCCCcccHHHHHHhcccceE
Confidence 566778888888888777661100000111234567778999999999998765 221 12234444444443443
Q ss_pred eccccccccchHhhHHHHHHHhCCc-eeecccCcccccCCCCCCCCCCCCcccccccCCcCcchhhhHHHHHHHHHHHHH
Q 019203 182 QMEWSLWTRDIEEEIIPLCRELGIG-IVPYSPLGRGFFGGKAVVENVPADSFLHFLPRFKGENLDRNKSIYFRIGNLAKK 260 (344)
Q Consensus 182 q~~~n~l~~~~~~~l~~~~~~~gi~-v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~ 260 (344)
-+.-- .-...-.-++.|...||+ |+.+++. .....+.....+||+.
T Consensus 440 VLt~G--Cgk~~~~~~~vc~~lGIPpVLd~GqC-------------------------------nD~~r~~~la~aLae~ 486 (576)
T COG1151 440 VLTLG--CGKYRFNKADVGDILGIPRVLDFGQC-------------------------------NDIYRIIVLALALAEV 486 (576)
T ss_pred EEecc--cchhhhhhhccccccCCCcccccccc-------------------------------chHHHHHHHHHHHHHH
Confidence 33211 111111234778888887 3333222 2334555677888888
Q ss_pred cCCCHH
Q 019203 261 YNCTSA 266 (344)
Q Consensus 261 ~~~s~a 266 (344)
+|++..
T Consensus 487 lgvdI~ 492 (576)
T COG1151 487 LGLDIN 492 (576)
T ss_pred hCCCCc
Confidence 887643
No 103
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=48.41 E-value=2.1e+02 Score=25.90 Aligned_cols=155 Identities=12% Similarity=0.105 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHcCCCccccccccCCCcHHHHH--HHHHhc-CCCCCe-EEEeccCcCCCCCCccccCCChHHHHHHHHH
Q 019203 41 EDGITMIKHAFSKGITFFDTADVYGQNANEVLL--GKALKQ-LPREKI-QVATKFGIAGIGVAGVIVKGAPDYVRSCCEA 116 (344)
Q Consensus 41 ~~~~~~l~~A~~~Gin~~Dta~~Yg~g~sE~~l--g~~l~~-~~r~~~-~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (344)
+...+.++..-+.|+.++..++.=+.+..+..+ .+.|++ ..-+-+ +++.. +.++..+...+..
T Consensus 15 ~~l~~~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~~g~~~i~Hlt~r-------------~~n~~~l~~~L~~ 81 (272)
T TIGR00676 15 ENLWETVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKETGIPTVPHLTCI-------------GATREEIREILRE 81 (272)
T ss_pred HHHHHHHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeec-------------CCCHHHHHHHHHH
Confidence 445556666667789999988665533334333 333442 121222 22222 3567778777774
Q ss_pred HHhhcCCCceeEEEecCCCC-------CCCHHHHHHHHHHHHHcCcccEEecCCCC--------H-HHHHHHhhc----C
Q 019203 117 SLKRLDVDYIDLYYQHRVDT-------SVPIEETIGEMKKLVEEGKIKYIGLSEAS--------P-GTIRRAHAV----H 176 (344)
Q Consensus 117 sL~~Lg~d~iDl~~lh~~~~-------~~~~~e~~~~L~~l~~~G~ir~iGvs~~~--------~-~~l~~~~~~----~ 176 (344)
+..+|++ +++.|-.... ...+....+.++.+++..---+||+..++ . ++++++.+. .
T Consensus 82 -~~~~Gi~--nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA 158 (272)
T TIGR00676 82 -YRELGIR--HILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGA 158 (272)
T ss_pred -HHHCCCC--EEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 4888865 3443443221 12334455555555554223578876532 1 234433333 3
Q ss_pred CcceeeccccccccchHhhHHHHHHHhCCceeecccCccccc
Q 019203 177 PITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFF 218 (344)
Q Consensus 177 ~~~~~q~~~n~l~~~~~~~l~~~~~~~gi~v~a~spl~~G~L 218 (344)
.+-+-|.-|+. +.-.++++.|++.||.+ |+--|++
T Consensus 159 ~f~iTQ~~fd~---~~~~~~~~~~~~~gi~~----PIi~Gi~ 193 (272)
T TIGR00676 159 DYAITQLFFDN---DDYYRFVDRCRAAGIDV----PIIPGIM 193 (272)
T ss_pred CeEeeccccCH---HHHHHHHHHHHHcCCCC----CEecccC
Confidence 46666776666 33367888999998764 4444553
No 104
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=48.29 E-value=2.9e+02 Score=27.48 Aligned_cols=103 Identities=9% Similarity=0.057 Sum_probs=60.2
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcC-cccEEecCC----C--CHHHHHHHhhcC
Q 019203 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG-KIKYIGLSE----A--SPGTIRRAHAVH 176 (344)
Q Consensus 104 ~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G-~ir~iGvs~----~--~~~~l~~~~~~~ 176 (344)
..+++.|.+.++...++.|+.++ .+...+.....+.+.+.+++|++.| .-..++++. . +.+.+ +++...
T Consensus 221 ~rs~e~Vv~Ei~~l~~~~gv~~~---~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell-~~l~~a 296 (497)
T TIGR02026 221 HRDPKKFVDEIEWLVRTHGVGFF---ILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADIL-HLYRRA 296 (497)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEE---EEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHH-HHHHHh
Confidence 35889999999998888887654 3333333345566778888888887 323444432 1 33334 444434
Q ss_pred Ccceeecccccccc------------chHhhHHHHHHHhCCceeec
Q 019203 177 PITAVQMEWSLWTR------------DIEEEIIPLCRELGIGIVPY 210 (344)
Q Consensus 177 ~~~~~q~~~n~l~~------------~~~~~l~~~~~~~gi~v~a~ 210 (344)
.+..+++-.--.++ ....+.++.++++||.+.+.
T Consensus 297 G~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~ 342 (497)
T TIGR02026 297 GLVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQ 342 (497)
T ss_pred CCcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEE
Confidence 44444332222221 11156788899999987653
No 105
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=47.76 E-value=26 Score=24.02 Aligned_cols=22 Identities=27% Similarity=0.441 Sum_probs=19.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHH
Q 019203 253 RIGNLAKKYNCTSAQLALAWVL 274 (344)
Q Consensus 253 ~l~~ia~~~~~s~aqlal~~~l 274 (344)
-+.+||+++|+++.++|..|+.
T Consensus 15 ~FveIAr~~~i~a~e~a~~w~~ 36 (63)
T PF11242_consen 15 SFVEIARKIGITAKEVAKAWAE 36 (63)
T ss_pred cHHHHHHHhCCCHHHHHHHHHH
Confidence 3678999999999999999985
No 106
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=47.53 E-value=2.5e+02 Score=26.47 Aligned_cols=152 Identities=9% Similarity=0.026 Sum_probs=84.4
Q ss_pred CHHHHHHHHHHHHHcCCCccccccccCCCcHHHHHHHHHhcCCCCCeEEEeccCcCCCCCCccccCCChHHHHHHHHHHH
Q 019203 39 SEEDGITMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASL 118 (344)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~sE~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL 118 (344)
+.++..+.+..+.+.|++.|=.--....-..+.-.=+++++.-.+++.|..-.. ..++.+...+-+ +.|
T Consensus 141 ~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~d~~~v~air~~~g~~~~l~vDaN----------~~~~~~~A~~~~-~~l 209 (355)
T cd03321 141 GAKLATERAVTAAEEGFHAVKTKIGYPTADEDLAVVRSIRQAVGDGVGLMVDYN----------QSLTVPEAIERG-QAL 209 (355)
T ss_pred hHHHHHHHHHHHHHhhhHHHhhhcCCCChHhHHHHHHHHHHhhCCCCEEEEeCC----------CCcCHHHHHHHH-HHH
Confidence 344555666666777887654311111100122222344432234555554431 234555433332 234
Q ss_pred hhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCccc-EEecCCCCHHHHHHHhhcCCcceeeccccccccc-hHhhH
Q 019203 119 KRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRD-IEEEI 196 (344)
Q Consensus 119 ~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~l~~~-~~~~l 196 (344)
+.++ +.++-.|-.. +-++.+.+|++..-|. +.|=+.++.+.+.++++...++++|+..+..--- ....+
T Consensus 210 ~~~~-----i~~iEeP~~~----~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~d~i~~~~~~~GGit~~~~i 280 (355)
T cd03321 210 DQEG-----LTWIEEPTLQ----HDYEGHARIASALRTPVQMGENWLGPEEMFKALSAGACDLVMPDLMKIGGVTGWLRA 280 (355)
T ss_pred HcCC-----CCEEECCCCC----cCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCCCCeEecCHhhhCCHHHHHHH
Confidence 4444 4455555433 2356677777765443 4444567889999999888899999877654321 12578
Q ss_pred HHHHHHhCCceeec
Q 019203 197 IPLCRELGIGIVPY 210 (344)
Q Consensus 197 ~~~~~~~gi~v~a~ 210 (344)
..+|+.+|+.++.+
T Consensus 281 a~~A~~~gi~~~~h 294 (355)
T cd03321 281 SALAEQAGIPMSSH 294 (355)
T ss_pred HHHHHHcCCeeccc
Confidence 99999999998643
No 107
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=47.51 E-value=56 Score=28.76 Aligned_cols=121 Identities=17% Similarity=0.244 Sum_probs=70.8
Q ss_pred HHHHhhcCCCceeEEEecCCC-CCCCHHHHHHHHHHHHHcCcccEEecC----CCCHHHHHHHhhcCCcceeeccccccc
Q 019203 115 EASLKRLDVDYIDLYYQHRVD-TSVPIEETIGEMKKLVEEGKIKYIGLS----EASPGTIRRAHAVHPITAVQMEWSLWT 189 (344)
Q Consensus 115 ~~sL~~Lg~d~iDl~~lh~~~-~~~~~~e~~~~L~~l~~~G~ir~iGvs----~~~~~~l~~~~~~~~~~~~q~~~n~l~ 189 (344)
+..-+-+|+. ++.+--.. .+..++++.++|..|+ +..|... .+-.+.++++++...+.++-- ++.
T Consensus 52 ~~~Ae~~gi~---l~~~~~~g~~e~eve~L~~~l~~l~----~d~iv~GaI~s~yqk~rve~lc~~lGl~~~~P---LWg 121 (223)
T COG2102 52 ELQAEAMGIP---LVTFDTSGEEEREVEELKEALRRLK----VDGIVAGAIASEYQKERVERLCEELGLKVYAP---LWG 121 (223)
T ss_pred HHHHHhcCCc---eEEEecCccchhhHHHHHHHHHhCc----ccEEEEchhhhHHHHHHHHHHHHHhCCEEeec---ccC
Confidence 4444566755 33332222 2335667777777777 5555553 344456667777666554322 334
Q ss_pred cchHhhHHHHHHHhCCceeecccCcccccCCCCCCCCCCCCcccccccCCcCcchhhhHHHHHHHHHHHHHcCCCHH
Q 019203 190 RDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSFLHFLPRFKGENLDRNKSIYFRIGNLAKKYNCTSA 266 (344)
Q Consensus 190 ~~~~~~l~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~a 266 (344)
+++ .+++...-+.|..++.-+.-+.|+-. . +-+. .-..+..+.+..+.++||+.|+
T Consensus 122 ~d~-~ell~e~~~~Gf~~~Iv~Vsa~gL~~-~-----------------~lGr--~i~~~~~e~l~~l~~~ygi~~~ 177 (223)
T COG2102 122 RDP-EELLEEMVEAGFEAIIVAVSAEGLDE-S-----------------WLGR--RIDREFLEELKSLNRRYGIHPA 177 (223)
T ss_pred CCH-HHHHHHHHHcCCeEEEEEEeccCCCh-H-----------------HhCC--ccCHHHHHHHHHHHHhcCCCcc
Confidence 443 57888888888888877777777621 0 0000 1123556889999999998763
No 108
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=47.48 E-value=1.1e+02 Score=29.41 Aligned_cols=60 Identities=13% Similarity=0.051 Sum_probs=36.3
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEEecCCCCC-------------CCHHH---HH-HHHHHHHHcCcccEEecCCCCH
Q 019203 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS-------------VPIEE---TI-GEMKKLVEEGKIKYIGLSEASP 166 (344)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~-------------~~~~e---~~-~~L~~l~~~G~ir~iGvs~~~~ 166 (344)
-+.+.+.+.++..+ .|+.++|.+|.+.--..+ .+.++ .+ .+.+.|.+.|- .++++|||..
T Consensus 179 qt~e~~~~tl~~~~-~l~p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yeisnfa~ 255 (400)
T PRK07379 179 QTLEDWQASLEAAI-ALNPTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQAGY-EHYEISNYAK 255 (400)
T ss_pred CCHHHHHHHHHHHH-cCCCCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCC-ceeeeeheEC
Confidence 46777877777554 588999999877632211 01111 22 34556667775 4678888743
No 109
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=46.92 E-value=2.2e+02 Score=26.74 Aligned_cols=105 Identities=21% Similarity=0.206 Sum_probs=60.3
Q ss_pred ccCCChHHHHHHHHHHHhhcCCCceeEEEecCC--------CCCCCHHHHHHHHHHHHHcCcccEEecCC---CCHHHHH
Q 019203 102 IVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRV--------DTSVPIEETIGEMKKLVEEGKIKYIGLSE---ASPGTIR 170 (344)
Q Consensus 102 ~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~--------~~~~~~~e~~~~L~~l~~~G~ir~iGvs~---~~~~~l~ 170 (344)
.+.++.+.+.+-++ .|.+.|+++|.+-+.-.. ....+..+.++.+.+.. ...+...+.. .+.+.++
T Consensus 19 ~~~f~~~~~~~i~~-~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~--~~~~~~~ll~pg~~~~~dl~ 95 (337)
T PRK08195 19 RHQYTLEQVRAIAR-ALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVV--KQAKIAALLLPGIGTVDDLK 95 (337)
T ss_pred CCccCHHHHHHHHH-HHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhC--CCCEEEEEeccCcccHHHHH
Confidence 34577887766555 699999999999643211 01112234444443332 3355444332 2566776
Q ss_pred HHhhcCCcceeeccccccccchHhhHHHHHHHhCCceeec
Q 019203 171 RAHAVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPY 210 (344)
Q Consensus 171 ~~~~~~~~~~~q~~~n~l~~~~~~~l~~~~~~~gi~v~a~ 210 (344)
.+.+. .++.+.+.++.-.-+.....+++++++|..+...
T Consensus 96 ~a~~~-gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~ 134 (337)
T PRK08195 96 MAYDA-GVRVVRVATHCTEADVSEQHIGLARELGMDTVGF 134 (337)
T ss_pred HHHHc-CCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEE
Confidence 66654 4566555444333223367899999999887764
No 110
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=46.89 E-value=1.1e+02 Score=29.11 Aligned_cols=74 Identities=9% Similarity=0.041 Sum_probs=52.6
Q ss_pred HHHHHHHHHcCccc-EEecCCCCHHHHHHHhhcCCcceeecccccccc-chHhhHHHHHHHhCCceeecccCcccc
Q 019203 144 IGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTR-DIEEEIIPLCRELGIGIVPYSPLGRGF 217 (344)
Q Consensus 144 ~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~l~~-~~~~~l~~~~~~~gi~v~a~spl~~G~ 217 (344)
++.+.+|++...+. ..|=|-++...+.+++....++++|+.....-. .....+...|+.+|+.++..+.+.+++
T Consensus 227 ~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~~s~i 302 (368)
T TIGR02534 227 REALARLTRRFNVPIMADESVTGPADALAIAKASAADVFALKTTKSGGLLESKKIAAIAEAAGIALYGGTMLEGPI 302 (368)
T ss_pred HHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCCceeeecchhhHH
Confidence 56677777766555 566667788888888888888888887665322 112578899999999988765554443
No 111
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=46.69 E-value=2.5e+02 Score=26.34 Aligned_cols=104 Identities=20% Similarity=0.189 Sum_probs=58.2
Q ss_pred ccCCChHHHHHHHHHHHhhcCCCceeEEEecC---------CCCCCCHHHHHHHHHHHHHcCcccEEecCC---CCHHHH
Q 019203 102 IVKGAPDYVRSCCEASLKRLDVDYIDLYYQHR---------VDTSVPIEETIGEMKKLVEEGKIKYIGLSE---ASPGTI 169 (344)
Q Consensus 102 ~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~---------~~~~~~~~e~~~~L~~l~~~G~ir~iGvs~---~~~~~l 169 (344)
.+.++.+.+.+-++ .|.+.|+++|.+-.... +... +-.+.++.+.+..+. .+...+.. .+.+.+
T Consensus 18 ~~~f~~~~~~~ia~-~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~-~~~e~i~~~~~~~~~--~~~~~ll~pg~~~~~dl 93 (333)
T TIGR03217 18 RHQFTIEQVRAIAA-ALDEAGVDAIEVTHGDGLGGSSFNYGFSAH-TDLEYIEAAADVVKR--AKVAVLLLPGIGTVHDL 93 (333)
T ss_pred CCcCCHHHHHHHHH-HHHHcCCCEEEEecCCCCCCccccCCCCCC-ChHHHHHHHHHhCCC--CEEEEEeccCccCHHHH
Confidence 34577777655554 69999999999963211 2111 222333333333333 33333322 256777
Q ss_pred HHHhhcCCcceeeccccccccchHhhHHHHHHHhCCceeec
Q 019203 170 RRAHAVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPY 210 (344)
Q Consensus 170 ~~~~~~~~~~~~q~~~n~l~~~~~~~l~~~~~~~gi~v~a~ 210 (344)
+.+.+. .++.+.+-++.-.-+.....++++++.|..+...
T Consensus 94 ~~a~~~-gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~ 133 (333)
T TIGR03217 94 KAAYDA-GARTVRVATHCTEADVSEQHIGMARELGMDTVGF 133 (333)
T ss_pred HHHHHC-CCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEE
Confidence 776664 4566665544432222367899999999887653
No 112
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=46.68 E-value=2.7e+02 Score=26.73 Aligned_cols=106 Identities=18% Similarity=0.211 Sum_probs=64.4
Q ss_pred HHHHHHHHHHH-----------hhcCCCceeEEEecCCCCC-----CCHHHHHHHHHHHHHcCccc-EEecC---CCCHH
Q 019203 108 DYVRSCCEASL-----------KRLDVDYIDLYYQHRVDTS-----VPIEETIGEMKKLVEEGKIK-YIGLS---EASPG 167 (344)
Q Consensus 108 ~~i~~~~~~sL-----------~~Lg~d~iDl~~lh~~~~~-----~~~~e~~~~L~~l~~~G~ir-~iGvs---~~~~~ 167 (344)
+.++..++... +.+| +|++.||.-..+ .+.++..+.+++..+.=.+= -|+=| ..+++
T Consensus 128 ~~i~~~~~dV~~dP~~wak~~V~~~~---aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~e 204 (389)
T TIGR00381 128 KPIRMHFEDVMEDPAEWARKCVKEFG---ADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPL 204 (389)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhC---CCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHH
Confidence 44555555544 5666 688888875432 34557777777764433332 22222 45788
Q ss_pred HHHHHhhcCCc-ceeeccccccccchHhhHHHHHHHhCCceeecccCccccc
Q 019203 168 TIRRAHAVHPI-TAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFF 218 (344)
Q Consensus 168 ~l~~~~~~~~~-~~~q~~~n~l~~~~~~~l~~~~~~~gi~v~a~spl~~G~L 218 (344)
.++++++...= ..+-..-|.=+ + ...+.+.|+++|..|++++|..-+.+
T Consensus 205 VLeaaLe~~~G~kpLL~SAt~e~-N-y~~ia~lAk~yg~~Vvv~s~~Din~a 254 (389)
T TIGR00381 205 VLEKAAEVAEGERCLLASANLDL-D-YEKIANAAKKYGHVVLSWTIMDINMQ 254 (389)
T ss_pred HHHHHHHHhCCCCcEEEecCchh-h-HHHHHHHHHHhCCeEEEEcCCcHHHH
Confidence 88888776321 22222222211 1 25789999999999999999876554
No 113
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=46.51 E-value=2.1e+02 Score=25.42 Aligned_cols=149 Identities=17% Similarity=0.217 Sum_probs=84.4
Q ss_pred HHHHHcCCCcccccc-ccCC-C-cHHHHHHHHHhcCCCCCeEEEeccCcCCCCCCccccCCChHHHHHHHHHHHhhcCCC
Q 019203 48 KHAFSKGITFFDTAD-VYGQ-N-ANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVD 124 (344)
Q Consensus 48 ~~A~~~Gin~~Dta~-~Yg~-g-~sE~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d 124 (344)
..|++.|..++|.=+ .-|. | ....++.+.... -..+..+|..+|-.+ +.+..+.......- .-|+|
T Consensus 14 ~~a~~~gaDiID~K~P~~GaLGA~~~~vi~~i~~~-~~~~~pvSAtiGDlp---------~~p~~~~~aa~~~a-~~Gvd 82 (235)
T PF04476_consen 14 EEALAGGADIIDLKNPAEGALGALFPWVIREIVAA-VPGRKPVSATIGDLP---------MKPGTASLAALGAA-ATGVD 82 (235)
T ss_pred HHHHhCCCCEEEccCCCCCCCCCCCHHHHHHHHHH-cCCCCceEEEecCCC---------CCchHHHHHHHHHH-hcCCC
Confidence 346788999999632 2221 2 245555555443 333466787776433 34555554444433 35899
Q ss_pred ceeEEEecCCCCCCC---HHHHHHHHHHHHHcCcccEEecCCC------CHHHHHHHhhcCCcceeeccc------cccc
Q 019203 125 YIDLYYQHRVDTSVP---IEETIGEMKKLVEEGKIKYIGLSEA------SPGTIRRAHAVHPITAVQMEW------SLWT 189 (344)
Q Consensus 125 ~iDl~~lh~~~~~~~---~~e~~~~L~~l~~~G~ir~iGvs~~------~~~~l~~~~~~~~~~~~q~~~------n~l~ 189 (344)
||=+-+.-..+.... +..+.+++.+.-.+.++-..+++++ ++..+.++.....++.+++.- ++++
T Consensus 83 yvKvGl~g~~~~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvMlDTa~Kdg~~L~d 162 (235)
T PF04476_consen 83 YVKVGLFGCKDYDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFDGVMLDTADKDGGSLFD 162 (235)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCCEEEEecccCCCCchhh
Confidence 988877644332211 1122233333334556778888887 355666666667778777732 2222
Q ss_pred c---chHhhHHHHHHHhCCce
Q 019203 190 R---DIEEEIIPLCRELGIGI 207 (344)
Q Consensus 190 ~---~~~~~l~~~~~~~gi~v 207 (344)
. ....+.++.|+++|+.+
T Consensus 163 ~~~~~~L~~Fv~~ar~~gL~~ 183 (235)
T PF04476_consen 163 HLSEEELAEFVAQARAHGLMC 183 (235)
T ss_pred cCCHHHHHHHHHHHHHccchh
Confidence 2 22267888899998864
No 114
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=46.48 E-value=1.3e+02 Score=28.73 Aligned_cols=61 Identities=15% Similarity=0.093 Sum_probs=37.6
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEecCCCCC------------CC-HH---HHH-HHHHHHHHcCcccEEecCCCCH
Q 019203 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS------------VP-IE---ETI-GEMKKLVEEGKIKYIGLSEASP 166 (344)
Q Consensus 104 ~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~------------~~-~~---e~~-~~L~~l~~~G~ir~iGvs~~~~ 166 (344)
.-+.+.+.+.++..+ .|++++|.+|.+.--..+ .+ .+ +.+ .+.+.|.+.|- .++++|||..
T Consensus 166 gqt~~~~~~~l~~~~-~l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yeis~fa~ 243 (370)
T PRK06294 166 TQSLSDFIVDLHQAI-TLPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGF-TRYELASYAK 243 (370)
T ss_pred CCCHHHHHHHHHHHH-ccCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCC-CeeeeeeeeC
Confidence 357888888888655 589999999987632211 01 11 122 24455666665 5577887743
No 115
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=46.40 E-value=1.1e+02 Score=27.71 Aligned_cols=67 Identities=19% Similarity=0.208 Sum_probs=51.4
Q ss_pred CChHHHHHHHHHHHhhcCC--------------------------CceeEEEecCCCCCCCH---HHHHHHHHHHHHcCc
Q 019203 105 GAPDYVRSCCEASLKRLDV--------------------------DYIDLYYQHRVDTSVPI---EETIGEMKKLVEEGK 155 (344)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~--------------------------d~iDl~~lh~~~~~~~~---~e~~~~L~~l~~~G~ 155 (344)
.+++. ++.++++|+++|. ..-|+++|.-|....+. .++++.|.+|+++|+
T Consensus 112 ~~~~d-~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~ 190 (254)
T COG1121 112 LNKKD-KEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK 190 (254)
T ss_pred ccHHH-HHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence 44454 6888899999886 45689999998776654 478999999999976
Q ss_pred ccEEecCCCCHHHHHHHhh
Q 019203 156 IKYIGLSEASPGTIRRAHA 174 (344)
Q Consensus 156 ir~iGvs~~~~~~l~~~~~ 174 (344)
.|=+.+|+...+.+...
T Consensus 191 --tIl~vtHDL~~v~~~~D 207 (254)
T COG1121 191 --TVLMVTHDLGLVMAYFD 207 (254)
T ss_pred --EEEEEeCCcHHhHhhCC
Confidence 77788888887766433
No 116
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=46.34 E-value=2.5e+02 Score=26.18 Aligned_cols=109 Identities=14% Similarity=0.078 Sum_probs=59.2
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEecCCCCCCCHH-HHHHHHHHHHHcCcccEEecCC----CCHHHH----HHHhhcC
Q 019203 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIE-ETIGEMKKLVEEGKIKYIGLSE----ASPGTI----RRAHAVH 176 (344)
Q Consensus 106 ~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~-e~~~~L~~l~~~G~ir~iGvs~----~~~~~l----~~~~~~~ 176 (344)
+.+.+.+.++..-+..++ .-+.+-.=++....+ .+.+.++.+..-..++.+|+.+ ..+..+ .+.++..
T Consensus 126 ~~~~~~~~i~~i~~~~~i---~~VvltGGEPL~~~d~~L~~ll~~l~~i~~~~~iri~tr~~~~~p~rit~el~~~L~~~ 202 (321)
T TIGR03821 126 NKAQWKEALEYIAQHPEI---NEVILSGGDPLMAKDHRLDWLLNLLEQIPHLKRLRIHTRLPVVIPDRITSGLCDLLANS 202 (321)
T ss_pred CHHHHHHHHHHHHhcCCC---CEEEEeCcccccCCchHHHHHHHHHHhCCCCcEEEEecCcceeeHHHhhHHHHHHHHhc
Confidence 334444444433333343 333344434433222 2556666777777888888764 333332 2233334
Q ss_pred Cccee-ecccccccc--chHhhHHHHHHHhCCceeecccCcccc
Q 019203 177 PITAV-QMEWSLWTR--DIEEEIIPLCRELGIGIVPYSPLGRGF 217 (344)
Q Consensus 177 ~~~~~-q~~~n~l~~--~~~~~l~~~~~~~gi~v~a~spl~~G~ 217 (344)
.+..+ ++++|-... +...+.++.+++.||.+...+++..|.
T Consensus 203 ~~~~~~~~h~dh~~Ei~d~~~~ai~~L~~~Gi~v~~qtvllkgi 246 (321)
T TIGR03821 203 RLQTVLVVHINHANEIDAEVADALAKLRNAGITLLNQSVLLRGV 246 (321)
T ss_pred CCcEEEEeeCCChHhCcHHHHHHHHHHHHcCCEEEecceeeCCC
Confidence 44444 456663211 112567888899999999999998775
No 117
>COG5310 Homospermidine synthase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=46.08 E-value=2.6e+02 Score=26.35 Aligned_cols=170 Identities=16% Similarity=0.181 Sum_probs=94.5
Q ss_pred cccccccccccCCC--------CCCCC----CCHHHHHHHHHHHHHcCCCccccccccCCCcHHHHHHHHHhcCCCCCeE
Q 019203 19 EVSKLGFGCMNLSG--------GYSSP----VSEEDGITMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQ 86 (344)
Q Consensus 19 ~vs~lglG~~~~~~--------~~~~~----~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~sE~~lg~~l~~~~r~~~~ 86 (344)
.|-.||||..+=|. .+... +|+.+ ...+...+.||+|+-++-.-.+ -.++|+..|+....+.+.
T Consensus 15 pIimIGfGSigrgTLPLierhf~~d~~~~~viDp~e--k~~k~~~~~girfV~e~it~~N--yk~vL~pll~~~~gqgf~ 90 (481)
T COG5310 15 PIIMIGFGSIGRGTLPLIERHFKFDRSRMVVIDPRE--KDRKILDERGIRFVQEAITRDN--YKDVLKPLLKGVGGQGFC 90 (481)
T ss_pred cEEEEeecccccccchhHHHhcCCChhheEEechhH--HHHHHHHhhhhHHHHHhcChhh--HHHHHHHHhhcCCCceEE
Confidence 46778888765442 11111 34333 6666777899999987643333 457888888865556666
Q ss_pred EEeccCcCCCCCCccccCCChHHHHHHHHHHHhhcCCCceeEEEecCCCCCCC-----HHHHHHHHHHHHHcCcccEEe-
Q 019203 87 VATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVP-----IEETIGEMKKLVEEGKIKYIG- 160 (344)
Q Consensus 87 i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~-----~~e~~~~L~~l~~~G~ir~iG- 160 (344)
|---+ +.+.-.+ -+.++++|+=|||-..=-|+....+ ..++--+|.+.+.+-|-|..|
T Consensus 91 vnLSv------------d~~s~Dl----mr~crk~~vLYidTvVEpW~gfyfDa~adn~artnyaLRet~lrEk~r~pgg 154 (481)
T COG5310 91 VNLSV------------DTSSLDL----MRLCRKHGVLYIDTVVEPWLGFYFDAQADNAARTNYALRETVLREKRRNPGG 154 (481)
T ss_pred EEeEe------------ccchhHH----HHHHHHcCeEEEeeeeccccccchhhhhhhhhhhhHHHHHHHHHHhccCCCC
Confidence 55443 2333333 4567889999999988888744322 223444567766666655444
Q ss_pred ---cCC--CCHHHHHHHhhcCCcc---eeeccccccccchHhhHHHHHHHhCCcee
Q 019203 161 ---LSE--ASPGTIRRAHAVHPIT---AVQMEWSLWTRDIEEEIIPLCRELGIGIV 208 (344)
Q Consensus 161 ---vs~--~~~~~l~~~~~~~~~~---~~q~~~n~l~~~~~~~l~~~~~~~gi~v~ 208 (344)
||. .++..+.......-++ -.-..|..-.++..++...++++.|+..+
T Consensus 155 ~TaVs~cGANPGmvswFVKqaLvdlAad~~ld~~ep~~ddr~gwAkLmkK~GVkgi 210 (481)
T COG5310 155 PTAVSTCGANPGMVSWFVKQALVDLAADLGLDFEEPAQDDREGWAKLMKKAGVKGI 210 (481)
T ss_pred CeeeeecCCCchHHHHHHHHHHHHHHHHhCcCccCCcchhhHHHHHHHHHcCCceE
Confidence 333 3443332222210000 00112222222223678888889888766
No 118
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=45.97 E-value=3.2e+02 Score=27.36 Aligned_cols=133 Identities=11% Similarity=0.152 Sum_probs=66.7
Q ss_pred HHHHHHHHHhc----CCCCCeEEEeccCcCCCCCCccccCCChHHHHHHHHHHHhhcCCCceeEEEecCCCCCCC-HHHH
Q 019203 69 NEVLLGKALKQ----LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVP-IEET 143 (344)
Q Consensus 69 sE~~lg~~l~~----~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~-~~e~ 143 (344)
.++-|-+.+++ .+.+=++|.|-|...-- .-+.+.+.+.++ +.++ ++++.+|.|.-... ....
T Consensus 69 g~~kL~~~I~~~~~~~~P~~I~V~tTC~~eiI-------GDDi~~v~~~~~---~~~~---~pVi~v~t~~f~g~~~~g~ 135 (513)
T CHL00076 69 SQEKVVDNITRKDKEERPDLIVLTPTCTSSIL-------QEDLQNFVDRAS---IESD---SDVILADVNHYRVNELQAA 135 (513)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEECCCCchhhh-------hcCHHHHHHHhh---cccC---CCEEEeCCCCCcccHHHHH
Confidence 44444444443 34455667777643321 112333323222 2333 68999999965432 2222
Q ss_pred HHHHHHHH------------------HcCcccEEecCC------CCHHHHHHHhhcCCcceeec----------------
Q 019203 144 IGEMKKLV------------------EEGKIKYIGLSE------ASPGTIRRAHAVHPITAVQM---------------- 183 (344)
Q Consensus 144 ~~~L~~l~------------------~~G~ir~iGvs~------~~~~~l~~~~~~~~~~~~q~---------------- 183 (344)
-.+++.++ .+++|--||.++ .+...++++++...+.++.+
T Consensus 136 ~~~l~~lv~~~~~~~~~~~~~~~~~~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~vn~v~~~g~sl~di~~~~~A 215 (513)
T CHL00076 136 DRTLEQIVRFYLEKARKQGTLDQSKTDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEINQIIPEGGSVEDLKNLPKA 215 (513)
T ss_pred HHHHHHHHHHHhhcccccccccccCCCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeEEEEECCCCCHHHHHhcccC
Confidence 22233222 235688888764 24567778877766665522
Q ss_pred cccccc-cchHhhHHHHHH-HhCCceeecccCc
Q 019203 184 EWSLWT-RDIEEEIIPLCR-ELGIGIVPYSPLG 214 (344)
Q Consensus 184 ~~n~l~-~~~~~~l~~~~~-~~gi~v~a~spl~ 214 (344)
.+|+.. +.....+.++.+ +.|++++...|++
T Consensus 216 ~~NIvl~~~~g~~~A~~Le~~fgiP~i~~~PiG 248 (513)
T CHL00076 216 WFNIVPYREVGLMTAKYLEKEFGMPYISTTPMG 248 (513)
T ss_pred cEEEEechhhhHHHHHHHHHHhCCCeEeeccCC
Confidence 222222 111123444444 4588887767764
No 119
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=45.58 E-value=2.7e+02 Score=26.41 Aligned_cols=149 Identities=15% Similarity=0.151 Sum_probs=0.0
Q ss_pred cCCChHHHHHHHHHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCc-ccEEecCCCCHHHHHHHhhc------
Q 019203 103 VKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPGTIRRAHAV------ 175 (344)
Q Consensus 103 ~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~-ir~iGvs~~~~~~l~~~~~~------ 175 (344)
..++.+...+-++. |.++|+++|.+- ....-+.-++.++.+.+.+. .+..+++....+.++.+.+.
T Consensus 18 ~~~s~~~k~~ia~~-L~~~Gv~~IEvG------~p~~~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i~ 90 (365)
T TIGR02660 18 VAFTAAEKLAIARA-LDEAGVDELEVG------IPAMGEEERAVIRAIVALGLPARLMAWCRARDADIEAAARCGVDAVH 90 (365)
T ss_pred CCCCHHHHHHHHHH-HHHcCCCEEEEe------CCCCCHHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcCCcCEEE
Q ss_pred --CCcceeeccccccccchH-----hhHHHHHHHhCCceeecccCcccccCCCCCCCCCCCCcccccccCCcCcchhhhH
Q 019203 176 --HPITAVQMEWSLWTRDIE-----EEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSFLHFLPRFKGENLDRNK 248 (344)
Q Consensus 176 --~~~~~~q~~~n~l~~~~~-----~~l~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (344)
.+.+-.++.+++-....+ .+.+++++++|+.|....+-+ .....
T Consensus 91 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~-----------------------------~r~~~ 141 (365)
T TIGR02660 91 ISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDA-----------------------------SRADP 141 (365)
T ss_pred EEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCC-----------------------------CCCCH
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHhcc
Q 019203 249 SIYFRIGNLAKKYNCTSAQLALAWVLGQGDDVVPIPGTTKMKNLDDNIDSL 299 (344)
Q Consensus 249 ~~~~~l~~ia~~~~~s~aqlal~~~l~~~~v~~vi~G~~~~~~l~enl~a~ 299 (344)
+.+..+.+.+.+.|... +..+. =+|..+|.++.+.++.+
T Consensus 142 ~~l~~~~~~~~~~Ga~~--------i~l~D----T~G~~~P~~v~~lv~~l 180 (365)
T TIGR02660 142 DFLVELAEVAAEAGADR--------FRFAD----TVGILDPFSTYELVRAL 180 (365)
T ss_pred HHHHHHHHHHHHcCcCE--------EEEcc----cCCCCCHHHHHHHHHHH
No 120
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=45.18 E-value=3.3e+02 Score=27.28 Aligned_cols=105 Identities=15% Similarity=0.154 Sum_probs=55.0
Q ss_pred ccCCCcHHHHHHHHHhc----CCCCCeEEEeccCcCCCCCCccccCCChHHHHHHHHHHHhhcCCCceeEEEecCCCCCC
Q 019203 63 VYGQNANEVLLGKALKQ----LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSV 138 (344)
Q Consensus 63 ~Yg~g~sE~~lg~~l~~----~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~ 138 (344)
..+.| +|+-|-+++.+ .+.+-++|.|-|.. +-|-..++...+.++.+ +.++.++.+.-..
T Consensus 64 dlv~G-~~ekL~~aI~~~~~~~~P~~I~V~sTC~s--------------eiIGdDi~~v~~~~~~~-~~Vi~v~t~gf~~ 127 (519)
T PRK02910 64 DLARG-TAELLKDTLRRADERFQPDLIVVGPSCTA--------------ELLQEDLGGLAKHAGLP-IPVLPLELNAYRV 127 (519)
T ss_pred cccCC-hHHHHHHHHHHHHHhcCCCEEEEeCCcHH--------------HHhccCHHHHHHHhCCC-CCEEEEecCCccc
Confidence 34434 45566666654 23344577777642 22333334444444433 5799999886543
Q ss_pred C----HHHHHHHHH-HHH-----------HcCcccEEecCC------CCHHHHHHHhhcCCcceeec
Q 019203 139 P----IEETIGEMK-KLV-----------EEGKIKYIGLSE------ASPGTIRRAHAVHPITAVQM 183 (344)
Q Consensus 139 ~----~~e~~~~L~-~l~-----------~~G~ir~iGvs~------~~~~~l~~~~~~~~~~~~q~ 183 (344)
. .+.++..+- .+. +.++|--||.+. .+...++++++...+.++.+
T Consensus 128 ~~~~G~~~al~~lv~~~~~~~~~~~~~~~~~~~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~vn~v 194 (519)
T PRK02910 128 KENWAADETFYQLVRALAKKAAELPQPKTARPSVNLLGPTALGFHHRDDLTELRRLLATLGIDVNVV 194 (519)
T ss_pred ccchHHHHHHHHHHHHHhhhcccccccCCCCCeEEEEecCccCCCChhHHHHHHHHHHHcCCeEEEE
Confidence 2 223333322 122 134577788754 23466777777766665543
No 121
>PRK05660 HemN family oxidoreductase; Provisional
Probab=45.05 E-value=1.4e+02 Score=28.46 Aligned_cols=107 Identities=13% Similarity=0.102 Sum_probs=0.0
Q ss_pred ccccccccccCCC----CCCCCCCHHHHHHHHHHHHHcCCCccccccccCCCcHHHHHHHHHhcCCCCCeEEEeccCcCC
Q 019203 20 VSKLGFGCMNLSG----GYSSPVSEEDGITMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAG 95 (344)
Q Consensus 20 vs~lglG~~~~~~----~~~~~~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~sE~~lg~~l~~~~r~~~~i~tK~~~~~ 95 (344)
+.+|.+|.-++.. ..+...+.+++.+.++.+-+.|+..+..-=.||
T Consensus 118 v~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~~~~~G~~~v~~dli~G------------------------------ 167 (378)
T PRK05660 118 VNRISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGLGLRSFNLDLMHG------------------------------ 167 (378)
T ss_pred CCEEEeccCcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecC------------------------------
Q ss_pred CCCCccccCCChHHHHHHHHHHHhhcCCCceeEEEec-------------CCCCCCCHHHHHHHHHHHHHcCcccEEecC
Q 019203 96 IGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQH-------------RVDTSVPIEETIGEMKKLVEEGKIKYIGLS 162 (344)
Q Consensus 96 ~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh-------------~~~~~~~~~e~~~~L~~l~~~G~ir~iGvs 162 (344)
.+..+.+.+.+.++..++ |++++|.+|.+- .|+.+..++-.-.+.+.|.+.|- ..+++|
T Consensus 168 ------lpgqt~~~~~~~l~~~~~-l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yei~ 239 (378)
T PRK05660 168 ------LPDQSLEEALDDLRQAIA-LNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGY-QQYETS 239 (378)
T ss_pred ------CCCCCHHHHHHHHHHHHh-cCCCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHHcCC-cEeecc
Q ss_pred CC
Q 019203 163 EA 164 (344)
Q Consensus 163 ~~ 164 (344)
||
T Consensus 240 ~f 241 (378)
T PRK05660 240 AY 241 (378)
T ss_pred cc
No 122
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=44.59 E-value=75 Score=28.01 Aligned_cols=114 Identities=11% Similarity=0.056 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHcCCCccccccccCCCcHHHHHHHHHhc-----CCCCCeEEEeccCcCCCCCCccccCCChHHHHHHHH
Q 019203 41 EDGITMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ-----LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCE 115 (344)
Q Consensus 41 ~~~~~~l~~A~~~Gin~~Dta~~Yg~g~sE~~lg~~l~~-----~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (344)
--+.+++.-+++.|.+..=.+ +|..+.+++++ ++-.+.++.-++......- .......+.-+.-++
T Consensus 43 vLsqr~~YG~L~~g~~v~yvs-------Te~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~--~~~~~~~~~~~~~L~ 113 (235)
T COG2874 43 VLSQRFAYGFLMNGYRVTYVS-------TELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNL--EPVNWGRRSARKLLD 113 (235)
T ss_pred HHHHHHHHHHHhCCceEEEEE-------echhHHHHHHHHHhcCCCchHHHhcceeEEEEecc--cccccChHHHHHHHH
Confidence 446788888999998865443 67777777776 2223333333332211100 011234555566677
Q ss_pred HHHhhcCCCceeEEEecCCCCCC------CHHHHHHHHHHHHHcCcccEEecCC
Q 019203 116 ASLKRLDVDYIDLYYQHRVDTSV------PIEETIGEMKKLVEEGKIKYIGLSE 163 (344)
Q Consensus 116 ~sL~~Lg~d~iDl~~lh~~~~~~------~~~e~~~~L~~l~~~G~ir~iGvs~ 163 (344)
..++....-.-|++.+.+.+.-. .+.+.+..+..|.+.||+--+=+.-
T Consensus 114 ~l~~~~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIilTvhp 167 (235)
T COG2874 114 LLLEFIKRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVIILTVHP 167 (235)
T ss_pred HHHhhHHhhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhCCCEEEEEeCh
Confidence 77777776667999999886432 3346677777888899987777643
No 123
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=44.57 E-value=2.9e+02 Score=26.41 Aligned_cols=84 Identities=17% Similarity=0.045 Sum_probs=56.8
Q ss_pred EEecCCCCCCCHHHHHHHHHHHHHc------CcccEEecCCCCHHHHHHHhhcCCcceeeccccccccc-hHhhHHHHHH
Q 019203 129 YYQHRVDTSVPIEETIGEMKKLVEE------GKIKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRD-IEEEIIPLCR 201 (344)
Q Consensus 129 ~~lh~~~~~~~~~e~~~~L~~l~~~------G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~l~~~-~~~~l~~~~~ 201 (344)
+++-.|-+..++++-++.+.+|.+. +.=-..|=+.++.+.+.++++....+++|+..+-.--- ....+..+|+
T Consensus 230 ~~iEqP~~~~d~~~~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~a~div~~kl~k~GGIt~a~kia~lA~ 309 (369)
T cd03314 230 LRIEGPMDAGSREAQIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAGAAHMVQIKTPDLGGIDNTIDAVLYCK 309 (369)
T ss_pred EEEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhCCCCEEEecchhcCCHHHHHHHHHHHH
Confidence 4555554333322446667777765 23334455667889999999888889999987764321 1267899999
Q ss_pred HhCCceeeccc
Q 019203 202 ELGIGIVPYSP 212 (344)
Q Consensus 202 ~~gi~v~a~sp 212 (344)
.+||.++..+.
T Consensus 310 a~Gi~~~~h~~ 320 (369)
T cd03314 310 EHGVGAYLGGS 320 (369)
T ss_pred HcCCcEEEeCC
Confidence 99999998654
No 124
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=44.45 E-value=2.4e+02 Score=25.49 Aligned_cols=131 Identities=15% Similarity=0.132 Sum_probs=77.0
Q ss_pred CHHHHHHHHHHHHHcCCCcccc---ccccCCC----cHHHHHHHHHhcCCCC-CeEEEeccCcCCCCCCccccCCChHHH
Q 019203 39 SEEDGITMIKHAFSKGITFFDT---ADVYGQN----ANEVLLGKALKQLPRE-KIQVATKFGIAGIGVAGVIVKGAPDYV 110 (344)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dt---a~~Yg~g----~sE~~lg~~l~~~~r~-~~~i~tK~~~~~~~~~~~~~~~~~~~i 110 (344)
+.++..+..+.+.+.|+..|+. +++...+ ...+.+.+.++..++. ++-|+.|++.. .+.+.+
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~----------~~~~~~ 178 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPY----------FDLEDI 178 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCC----------CCHHHH
Confidence 5677888888888999999885 3333221 2345566665542221 56788898643 344455
Q ss_pred HHHHHHHHhhcCCCceeEEEecCCCC-------------C---CC-----H-HHHHHHHHHHHHcC--cccEEecCCC-C
Q 019203 111 RSCCEASLKRLDVDYIDLYYQHRVDT-------------S---VP-----I-EETIGEMKKLVEEG--KIKYIGLSEA-S 165 (344)
Q Consensus 111 ~~~~~~sL~~Lg~d~iDl~~lh~~~~-------------~---~~-----~-~e~~~~L~~l~~~G--~ir~iGvs~~-~ 165 (344)
.+.++ .|+..|+|.|. +|.-.. . .. . .-.++.+.++++.= .+.-||+... +
T Consensus 179 ~~~a~-~l~~~Gad~i~---~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~ 254 (289)
T cd02810 179 VELAK-AAERAGADGLT---AINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDS 254 (289)
T ss_pred HHHHH-HHHHcCCCEEE---EEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCC
Confidence 55444 46778865554 442110 0 00 0 12466677776654 6778888776 4
Q ss_pred HHHHHHHhhcCCcceeecc
Q 019203 166 PGTIRRAHAVHPITAVQME 184 (344)
Q Consensus 166 ~~~l~~~~~~~~~~~~q~~ 184 (344)
.+.+.+.+... .+.+|+-
T Consensus 255 ~~da~~~l~~G-Ad~V~vg 272 (289)
T cd02810 255 GEDVLEMLMAG-ASAVQVA 272 (289)
T ss_pred HHHHHHHHHcC-ccHheEc
Confidence 67777777643 5666653
No 125
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=44.40 E-value=1.7e+02 Score=26.39 Aligned_cols=99 Identities=18% Similarity=0.213 Sum_probs=57.9
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCc-ccEEecCCCCHHHHHHHhhcCCcceee
Q 019203 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPGTIRRAHAVHPITAVQ 182 (344)
Q Consensus 104 ~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~q 182 (344)
.++.+...+-++ .|.++|++.|.+-. |... .+.+++.+.+.+.++ .+-++......+.++++.+. .++.+-
T Consensus 18 ~~s~~~k~~i~~-~L~~~Gv~~IEvG~---P~~~---~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~-g~~~i~ 89 (262)
T cd07948 18 FFDTEDKIEIAK-ALDAFGVDYIELTS---PAAS---PQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVET-GVDGVD 89 (262)
T ss_pred CCCHHHHHHHHH-HHHHcCCCEEEEEC---CCCC---HHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHc-CcCEEE
Confidence 466666555555 59999988888873 5333 333445555554443 44455556677888888775 334333
Q ss_pred ccccc--------cccch-H-----hhHHHHHHHhCCceeec
Q 019203 183 MEWSL--------WTRDI-E-----EEIIPLCRELGIGIVPY 210 (344)
Q Consensus 183 ~~~n~--------l~~~~-~-----~~l~~~~~~~gi~v~a~ 210 (344)
+.+.. +.+.. + .+++.+++++|+.|...
T Consensus 90 i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~ 131 (262)
T cd07948 90 LVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFS 131 (262)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 32211 11111 1 46778899999876654
No 126
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=44.03 E-value=3e+02 Score=26.35 Aligned_cols=24 Identities=8% Similarity=0.259 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHHHHHcCCCccccc
Q 019203 38 VSEEDGITMIKHAFSKGITFFDTA 61 (344)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~Dta 61 (344)
.+.++..++++...+.||..++.+
T Consensus 23 ~s~e~k~~ia~~L~~~GV~~IE~G 46 (378)
T PRK11858 23 FTNEEKLAIARMLDEIGVDQIEAG 46 (378)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEe
Confidence 367888899999999999999976
No 127
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=43.68 E-value=2.1e+02 Score=27.53 Aligned_cols=71 Identities=7% Similarity=-0.049 Sum_probs=53.4
Q ss_pred HHHHHHHHHHcCccc-EEecCCCCHHHHHHHhhcCCcceeecccccccc-chHhhHHHHHHHhCCceeecccC
Q 019203 143 TIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTR-DIEEEIIPLCRELGIGIVPYSPL 213 (344)
Q Consensus 143 ~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~l~~-~~~~~l~~~~~~~gi~v~a~spl 213 (344)
.++.+.+|++.-.+. ..|=|-++...++++++...++++|+...-.-- .....+..+|+.+|+.++.++..
T Consensus 245 d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~a~dii~~d~~~~GGit~~~kia~lA~~~gi~~~~h~~~ 317 (404)
T PRK15072 245 NQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQLIDYIRTTVTHAGGITHLRRIADFAALYQVRTGSHGPT 317 (404)
T ss_pred CHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcCCCCEEecCccccCcHHHHHHHHHHHHHcCCceeeccCc
Confidence 367777888776665 556667789999999998889999987665422 11267899999999999987554
No 128
>PLN02428 lipoic acid synthase
Probab=43.07 E-value=3e+02 Score=26.13 Aligned_cols=158 Identities=15% Similarity=0.246 Sum_probs=82.9
Q ss_pred CCHHHHHHHHHHHHHcCCCccccc----cccCCCcHHHHHHHHHhcCCC--CCeEEEeccCcCCCCCCccccCCChHHHH
Q 019203 38 VSEEDGITMIKHAFSKGITFFDTA----DVYGQNANEVLLGKALKQLPR--EKIQVATKFGIAGIGVAGVIVKGAPDYVR 111 (344)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~Dta----~~Yg~g~sE~~lg~~l~~~~r--~~~~i~tK~~~~~~~~~~~~~~~~~~~i~ 111 (344)
.+.++..++.+.+.+.|++++=.. +.|-++..+ .+.+.++.++. ..+.|.. +.+.. ..+ .
T Consensus 130 ~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~ga~-~~~elir~Ir~~~P~i~Ie~-L~pdf--------~~d----~ 195 (349)
T PLN02428 130 PDPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGGSG-HFAETVRRLKQLKPEILVEA-LVPDF--------RGD----L 195 (349)
T ss_pred CChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCcccHH-HHHHHHHHHHHhCCCcEEEE-eCccc--------cCC----H
Confidence 356667788888888898765432 123333233 33334443211 1232222 11110 011 1
Q ss_pred HHHHHHHhhcCCCceeEEEecCCCC-----------CCCHHHHHHHHHHHHHc--Cccc----EEecCCCCHHHHHHHhh
Q 019203 112 SCCEASLKRLDVDYIDLYYQHRVDT-----------SVPIEETIGEMKKLVEE--GKIK----YIGLSEASPGTIRRAHA 174 (344)
Q Consensus 112 ~~~~~sL~~Lg~d~iDl~~lh~~~~-----------~~~~~e~~~~L~~l~~~--G~ir----~iGvs~~~~~~l~~~~~ 174 (344)
+ +=+.|+.-| +|. +-|+++. ....++.++.|+.+++. |..- -+|+ ..+.+++.+.+.
T Consensus 196 e-lL~~L~eAG---~d~-i~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGL-GET~Edv~e~l~ 269 (349)
T PLN02428 196 G-AVETVATSG---LDV-FAHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGL-GETDEEVVQTME 269 (349)
T ss_pred H-HHHHHHHcC---CCE-EccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEec-CCCHHHHHHHHH
Confidence 1 222334445 555 3366653 13457788999999887 6643 2566 456666555433
Q ss_pred c---CCcceeec-cc----------ccccc-chHhhHHHHHHHhCCceeecccCcc
Q 019203 175 V---HPITAVQM-EW----------SLWTR-DIEEEIIPLCRELGIGIVPYSPLGR 215 (344)
Q Consensus 175 ~---~~~~~~q~-~~----------n~l~~-~~~~~l~~~~~~~gi~v~a~spl~~ 215 (344)
. ..++++.+ +| +-+-. ..-..+-+++.+.|...++.+||-.
T Consensus 270 ~Lrelgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sgp~vr 325 (349)
T PLN02428 270 DLRAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGPLVR 325 (349)
T ss_pred HHHHcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCceEEecCccc
Confidence 3 44444433 22 21111 1125677888899999999999863
No 129
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=42.86 E-value=3e+02 Score=26.05 Aligned_cols=164 Identities=14% Similarity=0.192 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHcCCCccccccccCCCc---HHHHHHHHHhcCCCC------CeEEEeccCcCCCCCCccccCCChH
Q 019203 38 VSEEDGITMIKHAFSKGITFFDTADVYGQNA---NEVLLGKALKQLPRE------KIQVATKFGIAGIGVAGVIVKGAPD 108 (344)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~---sE~~lg~~l~~~~r~------~~~i~tK~~~~~~~~~~~~~~~~~~ 108 (344)
.+.++..+.+..+.+.--.-++---..|+|+ +-..+-++++....+ .+.|+|= ....
T Consensus 129 lt~~EIv~qv~~~~~~~~~~~~~IvfmGmGEPlln~~~v~~~i~~l~~~~~i~~r~itvST~--------------G~~~ 194 (345)
T PRK14457 129 LKAHEIVDQVLTVQEDMQRRVSHVVFMGMGEPLLNIDEVLAAIRCLNQDLGIGQRRITVSTV--------------GVPK 194 (345)
T ss_pred cCHHHHHHHHHHHHHHhcCCCCEEEEEecCccccCHHHHHHHHHHHhcccCCccCceEEECC--------------Cchh
Q ss_pred HHHHHHHHHHhhcC-CCceeEEEecCCCCC-----------CCHHHHHHHHHH-HHHcCc---ccEEecCCC--CHHHHH
Q 019203 109 YVRSCCEASLKRLD-VDYIDLYYQHRVDTS-----------VPIEETIGEMKK-LVEEGK---IKYIGLSEA--SPGTIR 170 (344)
Q Consensus 109 ~i~~~~~~sL~~Lg-~d~iDl~~lh~~~~~-----------~~~~e~~~~L~~-l~~~G~---ir~iGvs~~--~~~~l~ 170 (344)
.+++-.+.-+++|| .+....+-||.+++. .+++++++++.+ +.+.|+ |+++=+.++ +.+.++
T Consensus 195 ~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~ 274 (345)
T PRK14457 195 TIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAITGRRVSFEYILLGGVNDLPEHAE 274 (345)
T ss_pred hHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHHHH
Q ss_pred HHhhc---CCcceeeccccccccchH--------hhHHHHHHHhCCceeecccCcc
Q 019203 171 RAHAV---HPITAVQMEWSLWTRDIE--------EEIIPLCRELGIGIVPYSPLGR 215 (344)
Q Consensus 171 ~~~~~---~~~~~~q~~~n~l~~~~~--------~~l~~~~~~~gi~v~a~spl~~ 215 (344)
++.+. .+..++-++||.+..... ..+.+..+++||.+......+.
T Consensus 275 ~La~~l~~l~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~~Gi~vtvR~~~G~ 330 (345)
T PRK14457 275 ELANLLRGFQSHVNLIPYNPIDEVEFQRPSPKRIQAFQRVLEQRGVAVSVRASRGL 330 (345)
T ss_pred HHHHHHhcCCCeEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCC
No 130
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=42.42 E-value=1.8e+02 Score=27.83 Aligned_cols=96 Identities=11% Similarity=0.102 Sum_probs=62.7
Q ss_pred CCCceeEEEecCCCCC-----------CCHHHHHHHHHHHH-HcCc---ccEEecCC--CCHHHHHH---HhhcC---Cc
Q 019203 122 DVDYIDLYYQHRVDTS-----------VPIEETIGEMKKLV-EEGK---IKYIGLSE--ASPGTIRR---AHAVH---PI 178 (344)
Q Consensus 122 g~d~iDl~~lh~~~~~-----------~~~~e~~~~L~~l~-~~G~---ir~iGvs~--~~~~~l~~---~~~~~---~~ 178 (344)
++++-=.+-||.+++. -+++++++++.++. +.|+ |+++=+.+ .+.+++++ ++... ..
T Consensus 235 ~l~~~LavSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~ 314 (373)
T PRK14459 235 GLPVTLAVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWV 314 (373)
T ss_pred cCCeEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCe
Confidence 3344456789999763 24688999988887 4454 55666654 35554444 44444 56
Q ss_pred ceeeccccccccc----h-H---hhHHHHHHHhCCceeecccCcccc
Q 019203 179 TAVQMEWSLWTRD----I-E---EEIIPLCRELGIGIVPYSPLGRGF 217 (344)
Q Consensus 179 ~~~q~~~n~l~~~----~-~---~~l~~~~~~~gi~v~a~spl~~G~ 217 (344)
.++-++||+.... + . ....+..+++||.+......+.-+
T Consensus 315 ~VNLIpyNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G~dI 361 (373)
T PRK14459 315 HVNLIPLNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQEI 361 (373)
T ss_pred EEEEEccCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCCcCH
Confidence 7788999986431 1 1 456777788999999887776443
No 131
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=42.26 E-value=73 Score=27.81 Aligned_cols=96 Identities=19% Similarity=0.179 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHHHHc-CCCccccccccCCCcHHHHHHHHHhcCCCCCeEEEeccCcCCCCCCccccCCChHHHHHHHHHH
Q 019203 39 SEEDGITMIKHAFSK-GITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEAS 117 (344)
Q Consensus 39 ~~~~~~~~l~~A~~~-Gin~~Dta~~Yg~g~sE~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 117 (344)
..+++..+.+...+. |+=|...++=|= +-+...+..+..+. .++++... +-+.+.| .+.
T Consensus 11 ~~eda~~a~~~gad~iG~If~~~SpR~V---s~~~a~~i~~~v~~-----~~~VgVf~--------n~~~~~i----~~i 70 (208)
T COG0135 11 RLEDAKAAAKAGADYIGFIFVPKSPRYV---SPEQAREIASAVPK-----VKVVGVFV--------NESIEEI----LEI 70 (208)
T ss_pred CHHHHHHHHHcCCCEEEEEEcCCCCCcC---CHHHHHHHHHhCCC-----CCEEEEEC--------CCCHHHH----HHH
Confidence 566666655554443 665666666665 34455555554332 12333322 2334444 556
Q ss_pred HhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHH---cCcccEEecCCC
Q 019203 118 LKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVE---EGKIKYIGLSEA 164 (344)
Q Consensus 118 L~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~---~G~ir~iGvs~~ 164 (344)
++.++ +|++|||...+ .+.+++|+. -..+++|.++.-
T Consensus 71 ~~~~~---ld~VQlHG~e~-------~~~~~~l~~~~~~~v~kai~v~~~ 110 (208)
T COG0135 71 AEELG---LDAVQLHGDED-------PEYIDQLKEELGVPVIKAISVSEE 110 (208)
T ss_pred HHhcC---CCEEEECCCCC-------HHHHHHHHhhcCCceEEEEEeCCc
Confidence 66665 79999999732 233444444 458899999764
No 132
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=41.95 E-value=34 Score=29.42 Aligned_cols=67 Identities=18% Similarity=0.227 Sum_probs=42.9
Q ss_pred HHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEEecC-CCCHHHHHHHhhcCCcceeeccccc
Q 019203 117 SLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPGTIRRAHAVHPITAVQMEWSL 187 (344)
Q Consensus 117 sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~n~ 187 (344)
.+..+|+||+-+.+. |.....+ ..+.+.+|.+.-..+.+||. +.+++.+.+..+...++++|++-+.
T Consensus 14 ~~~~~g~d~~Gfi~~--~~S~R~v--~~~~a~~l~~~~~~~~VgVf~~~~~~~I~~~~~~~~ld~vQLHG~e 81 (197)
T PF00697_consen 14 LAAELGADYLGFIFY--PKSPRYV--SPDQARELVSAVPPKIVGVFVNQSPEEILEIVEELGLDVVQLHGDE 81 (197)
T ss_dssp HHHHHTSSEEEEE----TTCTTB----HHHHHHHHCCSSSSEEEEESSS-HHHHHHHHHHCTESEEEE-SGG
T ss_pred HHHHcCCCEEeeecC--CCCCCcc--CHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHHcCCCEEEECCCC
Confidence 567799999888643 4322211 23444555554444588885 5578889898999999999987665
No 133
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=41.84 E-value=3.2e+02 Score=26.05 Aligned_cols=142 Identities=13% Similarity=0.064 Sum_probs=70.7
Q ss_pred CCCHHHHHHHHH-------HHHHcCCCccccc-------------------cccCCCcHH---HHHHHHHhc---CCCCC
Q 019203 37 PVSEEDGITMIK-------HAFSKGITFFDTA-------------------DVYGQNANE---VLLGKALKQ---LPREK 84 (344)
Q Consensus 37 ~~~~~~~~~~l~-------~A~~~Gin~~Dta-------------------~~Yg~g~sE---~~lg~~l~~---~~r~~ 84 (344)
..+.++..++++ .|.++|+..++.- +.||. .-| +++-+.++. .-.++
T Consensus 133 ~mt~~eI~~ii~~f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGG-slenR~Rf~~eii~air~~vG~d 211 (361)
T cd04747 133 EMTEADIDDVIAAFARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGG-SLAARSRFAAEVVKAIRAAVGPD 211 (361)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHcCCC
Confidence 356666665554 4456799888742 23442 222 233333332 22356
Q ss_pred eEEEeccCcCCCCCCccccCCChHHHHHHHHHHHhhcCCCceeEEEe--cCCCCCCCHHHHHHHHHHHHHcCcccEEecC
Q 019203 85 IQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQ--HRVDTSVPIEETIGEMKKLVEEGKIKYIGLS 162 (344)
Q Consensus 85 ~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~l--h~~~~~~~~~e~~~~L~~l~~~G~ir~iGvs 162 (344)
+.|..|+......+.......+.+....-++ .|+..|+|+|++-.- +.|..... .+.....+++.-.+.-+++.
T Consensus 212 ~~v~vRis~~~~~~~~~~~g~~~~e~~~~~~-~l~~~gvd~i~vs~g~~~~~~~~~~---~~~~~~~~k~~~~~pv~~~G 287 (361)
T cd04747 212 FPIILRFSQWKQQDYTARLADTPDELEALLA-PLVDAGVDIFHCSTRRFWEPEFEGS---ELNLAGWTKKLTGLPTITVG 287 (361)
T ss_pred CeEEEEECcccccccccCCCCCHHHHHHHHH-HHHHcCCCEEEecCCCccCCCcCcc---chhHHHHHHHHcCCCEEEEC
Confidence 7788888742211100011245555544433 467788888776331 11111110 12233334444445555554
Q ss_pred C-------------------CCHHHHHHHhhcCCcceeec
Q 019203 163 E-------------------ASPGTIRRAHAVHPITAVQM 183 (344)
Q Consensus 163 ~-------------------~~~~~l~~~~~~~~~~~~q~ 183 (344)
. .+++.++++++....|.+.+
T Consensus 288 ~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~ 327 (361)
T cd04747 288 SVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAV 327 (361)
T ss_pred CcccccccccccccccccccCCHHHHHHHHHCCCCCeehh
Confidence 4 36778888887776666544
No 134
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=41.58 E-value=2.9e+02 Score=25.51 Aligned_cols=93 Identities=13% Similarity=0.073 Sum_probs=51.3
Q ss_pred CCeEEEeccCcCCCCCCccccCCChHHHHHHHHHHHhhcCCCceeEEEecCCCCCC----------CHHHHHHHHHHHHH
Q 019203 83 EKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSV----------PIEETIGEMKKLVE 152 (344)
Q Consensus 83 ~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~----------~~~e~~~~L~~l~~ 152 (344)
.++.|..|+....... ...+.+...+-+ +-|+.+|+|+|++ |...... .....++.+..+++
T Consensus 207 ~d~~i~vris~~~~~~----~g~~~~e~~~la-~~l~~~G~d~i~v---s~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~ 278 (327)
T cd02803 207 PDFPVGVRLSADDFVP----GGLTLEEAIEIA-KALEEAGVDALHV---SGGSYESPPPIIPPPYVPEGYFLELAEKIKK 278 (327)
T ss_pred CCceEEEEechhccCC----CCCCHHHHHHHH-HHHHHcCCCEEEe---CCCCCcccccccCCCCCCcchhHHHHHHHHH
Confidence 5678888876543111 123444443333 3567778666553 3322111 01233455566666
Q ss_pred cCcccEEecCCC-CHHHHHHHhhcCCcceeec
Q 019203 153 EGKIKYIGLSEA-SPGTIRRAHAVHPITAVQM 183 (344)
Q Consensus 153 ~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q~ 183 (344)
.=.+--++..+. +++.++++++....+.+++
T Consensus 279 ~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~i 310 (327)
T cd02803 279 AVKIPVIAVGGIRDPEVAEEILAEGKADLVAL 310 (327)
T ss_pred HCCCCEEEeCCCCCHHHHHHHHHCCCCCeeee
Confidence 555666776665 4778888887766666665
No 135
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=41.42 E-value=3.4e+02 Score=26.31 Aligned_cols=109 Identities=16% Similarity=0.110 Sum_probs=59.1
Q ss_pred cccCCCcHHHHHHHHHhc----CCCCCeEEEeccCcCCCCCCccccCCChHHHHHHHHHHHhhcC-CCceeEEEecCCCC
Q 019203 62 DVYGQNANEVLLGKALKQ----LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLD-VDYIDLYYQHRVDT 136 (344)
Q Consensus 62 ~~Yg~g~sE~~lg~~l~~----~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg-~d~iDl~~lh~~~~ 136 (344)
..|| .|+-|-+++++ .+.+-++|.|-+.... --+.++.-+++.-++.. -.-+.++.++.|.-
T Consensus 61 ~V~G---g~~~L~~~i~~~~~~~~p~~I~v~~tC~~~l----------iGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf 127 (428)
T cd01965 61 AVFG---GEDNLIEALKNLLSRYKPDVIGVLTTCLTET----------IGDDVAGFIKEFRAEGPEPADFPVVYASTPSF 127 (428)
T ss_pred eeEC---cHHHHHHHHHHHHHhcCCCEEEEECCcchhh----------cCCCHHHHHHHHHhhccCCCCCeEEEeeCCCC
Confidence 3566 36666677665 3344567888775432 12224333433333211 01367888888875
Q ss_pred CCCH----HHHHHHHHHH-------HHcCcccEEecCCC---CHHHHHHHhhcCCcceeec
Q 019203 137 SVPI----EETIGEMKKL-------VEEGKIKYIGLSEA---SPGTIRRAHAVHPITAVQM 183 (344)
Q Consensus 137 ~~~~----~e~~~~L~~l-------~~~G~ir~iGvs~~---~~~~l~~~~~~~~~~~~q~ 183 (344)
.... +.++++|-+. ++.++|--||-++. +.+.+.++++...+.++.+
T Consensus 128 ~g~~~~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~~ 188 (428)
T cd01965 128 KGSHETGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPIIL 188 (428)
T ss_pred CCcHHHHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEEe
Confidence 5322 2344444332 23456777876654 4678888888766666554
No 136
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=41.26 E-value=4.6e+02 Score=27.75 Aligned_cols=158 Identities=13% Similarity=0.100 Sum_probs=85.2
Q ss_pred CCCHHHHHHHHH-------HHHHcCCCccccc-------------------cccCCCcHH---HHHHHHH---hcCCCCC
Q 019203 37 PVSEEDGITMIK-------HAFSKGITFFDTA-------------------DVYGQNANE---VLLGKAL---KQLPREK 84 (344)
Q Consensus 37 ~~~~~~~~~~l~-------~A~~~Gin~~Dta-------------------~~Yg~g~sE---~~lg~~l---~~~~r~~ 84 (344)
..+.++..++++ .|.+.|+..||-- +.||. .-| +++-+.+ ++.-..+
T Consensus 540 ~mt~~eI~~~i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGG-slenR~r~~~eiv~~ir~~~~~~ 618 (765)
T PRK08255 540 EMTRADMDRVRDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGG-SLENRLRYPLEVFRAVRAVWPAE 618 (765)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCC-CHHHHhHHHHHHHHHHHHhcCCC
Confidence 345666555444 4567899988852 24442 222 2222222 2222357
Q ss_pred eEEEeccCcCCCCCCccccCCChHHHHHHHHHHHhhcCCCceeEEEecCCCCC----CCHH--HHHHHHHHHHHcCcccE
Q 019203 85 IQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS----VPIE--ETIGEMKKLVEEGKIKY 158 (344)
Q Consensus 85 ~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~----~~~~--e~~~~L~~l~~~G~ir~ 158 (344)
+-|..|+....... ...+.+.... +=+-|+..|+|+||+ |..... .... -......++|+.=++--
T Consensus 619 ~~v~~ri~~~~~~~----~g~~~~~~~~-~~~~l~~~g~d~i~v---s~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv 690 (765)
T PRK08255 619 KPMSVRISAHDWVE----GGNTPDDAVE-IARAFKAAGADLIDV---SSGQVSKDEKPVYGRMYQTPFADRIRNEAGIAT 690 (765)
T ss_pred CeeEEEEccccccC----CCCCHHHHHH-HHHHHHhcCCcEEEe---CCCCCCcCCCCCcCccccHHHHHHHHHHcCCEE
Confidence 88899987543211 1245554443 334577888766665 422110 0000 01223355566556677
Q ss_pred EecCCC-CHHHHHHHhhcCCcceeec-cccccccchHhhHHHHHHHhCCc
Q 019203 159 IGLSEA-SPGTIRRAHAVHPITAVQM-EWSLWTRDIEEEIIPLCRELGIG 206 (344)
Q Consensus 159 iGvs~~-~~~~l~~~~~~~~~~~~q~-~~n~l~~~~~~~l~~~~~~~gi~ 206 (344)
+++.+. +++.++++++....|.+.+ +--+.++. =++..+++.++.
T Consensus 691 ~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~dP~---~~~~~~~~~~~~ 737 (765)
T PRK08255 691 IAVGAISEADHVNSIIAAGRADLCALARPHLADPA---WTLHEAAEIGYR 737 (765)
T ss_pred EEeCCCCCHHHHHHHHHcCCcceeeEcHHHHhCcc---HHHHHHHHcCCC
Confidence 777775 7788999998888777755 33333332 245566777776
No 137
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=41.21 E-value=2.8e+02 Score=25.19 Aligned_cols=166 Identities=13% Similarity=0.050 Sum_probs=84.1
Q ss_pred CCHHHHHHHHHHHHHcCCCcccccccc--------CCCcHHHHHHHHHhcCCCCCeEEEeccCcCCCCCCccccCCChHH
Q 019203 38 VSEEDGITMIKHAFSKGITFFDTADVY--------GQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDY 109 (344)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~Dta~~Y--------g~g~sE~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~ 109 (344)
.+.++..++.....+.||..+|....- -....++.+.++.+..++.++...+..-.... . ..+..+.
T Consensus 18 ~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~----~-~~~p~~~ 92 (275)
T cd07937 18 MRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVG----Y-RHYPDDV 92 (275)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccC----c-cCCCcHH
Confidence 467888888888889999999986311 11123445544444344555544443211110 0 0011222
Q ss_pred HHHHHHHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEEec-----CCCCHHHHHHHhhc---CCccee
Q 019203 110 VRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGL-----SEASPGTIRRAHAV---HPITAV 181 (344)
Q Consensus 110 i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~iGv-----s~~~~~~l~~~~~~---~~~~~~ 181 (344)
.+..++.+. ..|++.|-++ .+..+++.+.+.++..++.|+.-.+.+ +.++++.+.+..+. ...+.+
T Consensus 93 ~~~di~~~~-~~g~~~iri~-----~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i 166 (275)
T cd07937 93 VELFVEKAA-KNGIDIFRIF-----DALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSI 166 (275)
T ss_pred HHHHHHHHH-HcCCCEEEEe-----ecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 333344433 4465554442 222346778888888999996443334 34555555544332 344544
Q ss_pred ecc--ccccccchHhhHHHHHHHh-C--CceeecccCc
Q 019203 182 QME--WSLWTRDIEEEIIPLCREL-G--IGIVPYSPLG 214 (344)
Q Consensus 182 q~~--~n~l~~~~~~~l~~~~~~~-g--i~v~a~spl~ 214 (344)
.+. +..+.+..-.+++...+++ + ++++++.-++
T Consensus 167 ~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~G 204 (275)
T cd07937 167 CIKDMAGLLTPYAAYELVKALKKEVGLPIHLHTHDTSG 204 (275)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 442 2333333225666666654 3 4445554444
No 138
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=40.87 E-value=3.2e+02 Score=25.81 Aligned_cols=93 Identities=12% Similarity=0.125 Sum_probs=47.8
Q ss_pred CCeEEEeccCcCCCCCCccccCCChHHHHHHHHHHHhhcCCCceeEEEecCCCCC---C--CHHHHHHHHHHHHHcCccc
Q 019203 83 EKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS---V--PIEETIGEMKKLVEEGKIK 157 (344)
Q Consensus 83 ~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~---~--~~~e~~~~L~~l~~~G~ir 157 (344)
.++.|..|++..... ....+.+... .+=+.|+..|+|||++=.- +.... . ...+.++.+.+.++ +.+.
T Consensus 214 ~~~~v~~R~s~~~~~----~~g~~~ee~~-~i~~~L~~~GvD~I~Vs~g-~~~~~~~~~~~~~~~~~~~ik~~~~-~~iP 286 (353)
T cd04735 214 KDFILGYRFSPEEPE----EPGIRMEDTL-ALVDKLADKGLDYLHISLW-DFDRKSRRGRDDNQTIMELVKERIA-GRLP 286 (353)
T ss_pred CCceEEEEECccccc----CCCCCHHHHH-HHHHHHHHcCCCEEEeccC-ccccccccCCcchHHHHHHHHHHhC-CCCC
Confidence 577788888754321 1134454443 3334567778766665321 11110 0 11223333333332 4566
Q ss_pred EEecCCC-CHHHHHHHhhcCCcceeec
Q 019203 158 YIGLSEA-SPGTIRRAHAVHPITAVQM 183 (344)
Q Consensus 158 ~iGvs~~-~~~~l~~~~~~~~~~~~q~ 183 (344)
-|++... +++.++++++. ..+.+.+
T Consensus 287 Vi~~Ggi~t~e~ae~~l~~-gaD~V~~ 312 (353)
T cd04735 287 LIAVGSINTPDDALEALET-GADLVAI 312 (353)
T ss_pred EEEECCCCCHHHHHHHHHc-CCChHHH
Confidence 7777765 68888887776 4555443
No 139
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=40.46 E-value=1.4e+02 Score=26.73 Aligned_cols=31 Identities=16% Similarity=0.461 Sum_probs=19.7
Q ss_pred HHHHHHhCCCCeEEecCCCCHHHHHHHHhcc
Q 019203 269 ALAWVLGQGDDVVPIPGTTKMKNLDDNIDSL 299 (344)
Q Consensus 269 al~~~l~~~~v~~vi~G~~~~~~l~enl~a~ 299 (344)
.|+++.+.+-....-.|+++.+++++.++.+
T Consensus 105 lL~~~A~tgkPvIlSTG~stl~EI~~Av~~~ 135 (241)
T PF03102_consen 105 LLEYIAKTGKPVILSTGMSTLEEIERAVEVL 135 (241)
T ss_dssp HHHHHHTT-S-EEEE-TT--HHHHHHHHHHH
T ss_pred HHHHHHHhCCcEEEECCCCCHHHHHHHHHHH
Confidence 4566666555556678999999999988877
No 140
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=40.33 E-value=1.9e+02 Score=26.96 Aligned_cols=107 Identities=15% Similarity=0.206 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHcCCCccccccccCCCcHHHHHHHHHhcCCCCCeEEEeccCcCCCCCCccccCCChHHHHHHHHHHHhh
Q 019203 41 EDGITMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKR 120 (344)
Q Consensus 41 ~~~~~~l~~A~~~Gin~~Dta~~Yg~g~sE~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~ 120 (344)
..-+++++.+-+.|| .+|.|.. +++.+-+++.- .+..+|+|......- .+..+.--.++++...++
T Consensus 149 ~~Gk~lV~~~N~LgI-iiDlSH~-----s~kt~~Dvl~~--s~~PviaSHSN~~al------~~h~RNl~D~qlkaI~~~ 214 (313)
T COG2355 149 PFGKELVREMNELGI-IIDLSHL-----SDKTFWDVLDL--SKAPVVASHSNARAL------VDHPRNLSDEQLKAIAET 214 (313)
T ss_pred HHHHHHHHHHHhcCC-EEEeccc-----CCccHHHHHhc--cCCceEEecCCchhc------cCCCCCCCHHHHHHHHhc
Confidence 346899999999999 9998853 45667777762 455677776544331 122333334555666666
Q ss_pred cCCCceeEEEecCC-----CCCCCHHHHHHHHHHHHHcCcccEEecCC
Q 019203 121 LDVDYIDLYYQHRV-----DTSVPIEETIGEMKKLVEEGKIKYIGLSE 163 (344)
Q Consensus 121 Lg~d~iDl~~lh~~-----~~~~~~~e~~~~L~~l~~~G~ir~iGvs~ 163 (344)
=|+ |.+-++-.. ....++++..+.+..+++.+=++++|+.+
T Consensus 215 gGv--Igv~~~~~fl~~~~~~~atldd~v~hI~h~v~~~G~dhVglGs 260 (313)
T COG2355 215 GGV--IGVNFIPAFLRPGGAARATLDDLVRHIDHFVELVGIDHVGLGS 260 (313)
T ss_pred CCE--EEEEeehhhccCCCCCCCCHHHHHHHHHHHHHhcCcceeEecc
Confidence 664 444443322 23457899999999999999999999964
No 141
>PRK05339 PEP synthetase regulatory protein; Provisional
Probab=40.15 E-value=66 Score=29.28 Aligned_cols=100 Identities=16% Similarity=0.199 Sum_probs=0.0
Q ss_pred CHHHHHHHhhcCCcceeeccccccccchHhhHHHHHHHhCCceee-cccCcccccCCCCCCCCCCCCcccccccCCcCcc
Q 019203 165 SPGTIRRAHAVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVP-YSPLGRGFFGGKAVVENVPADSFLHFLPRFKGEN 243 (344)
Q Consensus 165 ~~~~l~~~~~~~~~~~~q~~~n~l~~~~~~~l~~~~~~~gi~v~a-~spl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~ 243 (344)
+.+++.++++...-.-..+-|++.++.....+.++|+.+||..+. ++|+- +.|.......+....+..+....
T Consensus 44 ~~~~~~~i~~~~~~~~~iV~~Tlv~~elr~~l~~~~~~~~i~~vdll~p~i-~~le~~lg~~p~~~pG~~~~ld~----- 117 (269)
T PRK05339 44 TEEKADEVLEEINAERPIVFYTLVDPELREILEERCAEFGIPCIDILGPLI-APLEQELGLKPTPEPGRTHGLDE----- 117 (269)
T ss_pred CHHHHHHHHHHHHhcCCEEEEeCCCHHHHHHHHHHHHHcCCCEEeccHHHH-HHHHHHHCcCCCCCCCcccCCcH-----
Q ss_pred hhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCC---------CeEEecCCCC
Q 019203 244 LDRNKSIYFRIGNLAKKYNCTSAQLALAWVLGQGD---------DVVPIPGTTK 288 (344)
Q Consensus 244 ~~~~~~~~~~l~~ia~~~~~s~aqlal~~~l~~~~---------v~~vi~G~~~ 288 (344)
+-+++|. |+.|++.+.. ...+|+|.|.
T Consensus 118 --------~Yf~RIe----------Aiefal~hDDG~~~~~l~~ADIiLvGVSR 153 (269)
T PRK05339 118 --------EYFKRIE----------AIEFALAHDDGQDPRGLDEADVILVGVSR 153 (269)
T ss_pred --------HHHHHHH----------HHHHHHHcCCCCCcCCcccCCEEEECcCC
No 142
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=39.86 E-value=1.8e+02 Score=28.53 Aligned_cols=30 Identities=20% Similarity=0.239 Sum_probs=22.1
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEecCC
Q 019203 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRV 134 (344)
Q Consensus 104 ~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~ 134 (344)
.-+.+.+++.++..+ .|+.++|++|.|.-.
T Consensus 226 gqT~e~~~~~l~~~~-~l~~~~is~y~L~~~ 255 (449)
T PRK09058 226 GQTPEIWQQDLAIVR-DLGLDGVDLYALNLL 255 (449)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEEeccccC
Confidence 356777878777554 489999999987643
No 143
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=39.85 E-value=3.2e+02 Score=25.48 Aligned_cols=136 Identities=10% Similarity=0.067 Sum_probs=80.3
Q ss_pred CHHHHHHHHHHHHHcCCCccccc---c-------ccCC--CcHHHHHHHHHhcCC-CCCeEEEeccCcCCCCCCccccCC
Q 019203 39 SEEDGITMIKHAFSKGITFFDTA---D-------VYGQ--NANEVLLGKALKQLP-REKIQVATKFGIAGIGVAGVIVKG 105 (344)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta---~-------~Yg~--g~sE~~lg~~l~~~~-r~~~~i~tK~~~~~~~~~~~~~~~ 105 (344)
+.++..+..+.+.+.|+..||.- + .+|. ...-+.+.+.++... --++-|+.|...... .
T Consensus 75 ~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~--------~ 146 (321)
T PRK10415 75 DPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWA--------P 146 (321)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEcccc--------C
Confidence 66776777777778999999952 2 1121 012344444444311 114557777643221 1
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEecCCCCCCCH--HHHHHHHHHHHHcCcccEEecCCC-CHHHHHHHhhcCCcceee
Q 019203 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPI--EETIGEMKKLVEEGKIKYIGLSEA-SPGTIRRAHAVHPITAVQ 182 (344)
Q Consensus 106 ~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~--~e~~~~L~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q 182 (344)
+..... .+-+-|+..|+ |.+.+|.-...... ..-|+.+.++++.=.|--||..+. +++.+.++++....+.+|
T Consensus 147 ~~~~~~-~~a~~le~~G~---d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVm 222 (321)
T PRK10415 147 EHRNCV-EIAQLAEDCGI---QALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALM 222 (321)
T ss_pred CcchHH-HHHHHHHHhCC---CEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEE
Confidence 111122 22234677785 66678865432111 134788888888777888888875 788898988877788888
Q ss_pred cccc
Q 019203 183 MEWS 186 (344)
Q Consensus 183 ~~~n 186 (344)
+-=-
T Consensus 223 iGR~ 226 (321)
T PRK10415 223 IGRA 226 (321)
T ss_pred EChH
Confidence 7533
No 144
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=39.24 E-value=2e+02 Score=27.00 Aligned_cols=69 Identities=17% Similarity=0.167 Sum_probs=51.3
Q ss_pred HHHHHHHHHHcCccc-EEecCCCCHHHHHHHhhcCCcceeecccccccc-chHhhHHHHHHHhCCceeecc
Q 019203 143 TIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTR-DIEEEIIPLCRELGIGIVPYS 211 (344)
Q Consensus 143 ~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~l~~-~~~~~l~~~~~~~gi~v~a~s 211 (344)
.++.+.+|.+...+. +.|=+.++...+.++++...++++|+..+..-- .....+...|+.+|+.++.++
T Consensus 210 d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a~d~i~~d~~~~GGit~~~~i~~~A~~~g~~~~~h~ 280 (341)
T cd03327 210 DIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGRAVDILQPDVNWVGGITELKKIAALAEAYGVPVVPHA 280 (341)
T ss_pred CHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeecccc
Confidence 366677788776666 555566788999999988889999987665422 112679999999999987654
No 145
>PRK14017 galactonate dehydratase; Provisional
Probab=38.86 E-value=2.5e+02 Score=26.79 Aligned_cols=70 Identities=14% Similarity=0.167 Sum_probs=52.9
Q ss_pred HHHHHHHHHcCccc-EEecCCCCHHHHHHHhhcCCcceeecccccccc-chHhhHHHHHHHhCCceeecccC
Q 019203 144 IGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTR-DIEEEIIPLCRELGIGIVPYSPL 213 (344)
Q Consensus 144 ~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~l~~-~~~~~l~~~~~~~gi~v~a~spl 213 (344)
++.+.+|.+...+. ..|=|-++...+..+++...++++|+..+..-- .....+.+.|+.+||.++.++..
T Consensus 217 ~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~ 288 (382)
T PRK14017 217 AEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCPL 288 (382)
T ss_pred HHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHHcCCeEeecCCC
Confidence 56777887776665 555567788999999998888999987665432 12268999999999999987654
No 146
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=38.77 E-value=3.5e+02 Score=25.72 Aligned_cols=88 Identities=13% Similarity=0.126 Sum_probs=57.2
Q ss_pred EecCCCCC-----------CCHHHHHHHHHHHH-HcCc---ccEEecCCC--CHHHHHHHhh---cCCcceeeccccccc
Q 019203 130 YQHRVDTS-----------VPIEETIGEMKKLV-EEGK---IKYIGLSEA--SPGTIRRAHA---VHPITAVQMEWSLWT 189 (344)
Q Consensus 130 ~lh~~~~~-----------~~~~e~~~~L~~l~-~~G~---ir~iGvs~~--~~~~l~~~~~---~~~~~~~q~~~n~l~ 189 (344)
-||.+++. -+++++++++.++. +.|+ |+++=+..+ +.+.++++.+ ..+..++-++||.+.
T Consensus 225 SLha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPyn~~~ 304 (356)
T PRK14462 225 SLHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNGIKAKVNLILFNPHE 304 (356)
T ss_pred ECCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhhcCcEEEEEeCCCCC
Confidence 49999763 23567888887655 4454 667766644 6666655544 345677889999865
Q ss_pred c----chH----hhHHHHHHHhCCceeecccCcccc
Q 019203 190 R----DIE----EEIIPLCRELGIGIVPYSPLGRGF 217 (344)
Q Consensus 190 ~----~~~----~~l~~~~~~~gi~v~a~spl~~G~ 217 (344)
. .+. ....+..+++||.+......+.-+
T Consensus 305 ~~~~~~ps~e~i~~f~~~l~~~gi~vtvR~~~G~dI 340 (356)
T PRK14462 305 GSKFERPSLEDMIKFQDYLNSKGLLCTIRESKGLDI 340 (356)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCCch
Confidence 3 111 345556677899998887776544
No 147
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=38.34 E-value=3.1e+02 Score=25.01 Aligned_cols=158 Identities=12% Similarity=0.158 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHcCCCccccccccCCCcHHHHHH--HHHhcCCCCCeEEEeccCcCCCCCCccccCCChHHHHHHHHHH
Q 019203 40 EEDGITMIKHAFSKGITFFDTADVYGQNANEVLLG--KALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEAS 117 (344)
Q Consensus 40 ~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~sE~~lg--~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 117 (344)
.+...+.++.-.+.+..|+..+..=|.+..+..+. ..|++. -.+-...-+. ..+.+...+...+.+.
T Consensus 15 ~~~~~~~~~~l~~~~p~fvsvT~~~~~~~~~~t~~~~~~l~~~--~g~~~i~Hlt---------cr~~~~~~l~~~L~~~ 83 (281)
T TIGR00677 15 VQNLYERMDRMVASGPLFIDITWGAGGTTAELTLTIASRAQNV--VGVETCMHLT---------CTNMPIEMIDDALERA 83 (281)
T ss_pred HHHHHHHHHHHhhCCCCEEEeccCCCCcchhhHHHHHHHHHHh--cCCCeeEEec---------cCCCCHHHHHHHHHHH
Confidence 34456666666788898998875443323344443 333321 1221111111 1234566676666644
Q ss_pred HhhcCCCceeEEEecCCCC---------CCCHHHHHHHHHHHHHc-CcccEEecCCCC--------H-HHHHHHhhc---
Q 019203 118 LKRLDVDYIDLYYQHRVDT---------SVPIEETIGEMKKLVEE-GKIKYIGLSEAS--------P-GTIRRAHAV--- 175 (344)
Q Consensus 118 L~~Lg~d~iDl~~lh~~~~---------~~~~~e~~~~L~~l~~~-G~ir~iGvs~~~--------~-~~l~~~~~~--- 175 (344)
..+|++. ++.|-...+ ...++.+.+.++.+++. |.--.||+..++ . ..+.++.+.
T Consensus 84 -~~~Gi~n--iLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~~~f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~a 160 (281)
T TIGR00677 84 -YSNGIQN--ILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSKYGDYFCIGVAGYPEGHPEAESVELDLKYLKEKVDA 160 (281)
T ss_pred -HHCCCCE--EEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCceEEEEEECCCCCCCCCCHHHHHHHHHHHHHc
Confidence 8888764 444443221 12334455666666554 444689998653 1 123333332
Q ss_pred -CCcceeeccccccccchHhhHHHHHHHhCCceeecccCccccc
Q 019203 176 -HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFF 218 (344)
Q Consensus 176 -~~~~~~q~~~n~l~~~~~~~l~~~~~~~gi~v~a~spl~~G~L 218 (344)
..+-+-|.-|+. +.-.++++.|++.||.+ |+--|++
T Consensus 161 GA~f~iTQ~~Fd~---~~~~~f~~~~~~~gi~~----PIi~GI~ 197 (281)
T TIGR00677 161 GADFIITQLFYDV---DNFLKFVNDCRAIGIDC----PIVPGIM 197 (281)
T ss_pred CCCEeeccceecH---HHHHHHHHHHHHcCCCC----CEEeecc
Confidence 345556776665 33357888899997654 4444554
No 148
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=38.16 E-value=3.9e+02 Score=26.11 Aligned_cols=104 Identities=17% Similarity=0.106 Sum_probs=59.4
Q ss_pred cccCCCcHHHHHHHHHhc----CCC-CCeEEEeccCcCCCCCCccccCCChHHHHHHHHHHHhhcCCCceeEEEecCCCC
Q 019203 62 DVYGQNANEVLLGKALKQ----LPR-EKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDT 136 (344)
Q Consensus 62 ~~Yg~g~sE~~lg~~l~~----~~r-~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~ 136 (344)
-.|| .|+-|-+++++ .++ +=++|.|-+...- .-+++...+++.-++++ +.++.+|.++-
T Consensus 97 ~V~G---g~~~L~~aI~~~~~~~~p~~~I~V~~tC~~~l----------iGdDi~~v~~~~~~~~~---~pvi~v~t~gf 160 (443)
T TIGR01862 97 IVFG---GEKKLKKLIHEAFTEFPLIKAISVYATCPTGL----------IGDDIEAVAKEVSKEIG---KDVVAVNCPGF 160 (443)
T ss_pred eeeC---cHHHHHHHHHHHHHhCCccceEEEECCChHHH----------hccCHHHHHHHHHHhcC---CCEEEEecCCc
Confidence 4677 46666666665 344 5577888775332 22334444444444554 68999999875
Q ss_pred CC-----CHHHHHHH-HHHHH--------HcCcccEEecCCC--CHHHHHHHhhcCCccee
Q 019203 137 SV-----PIEETIGE-MKKLV--------EEGKIKYIGLSEA--SPGTIRRAHAVHPITAV 181 (344)
Q Consensus 137 ~~-----~~~e~~~~-L~~l~--------~~G~ir~iGvs~~--~~~~l~~~~~~~~~~~~ 181 (344)
.. ....+.++ ++.+. ++++|--||-.++ +.+.+.++++...+.++
T Consensus 161 ~g~~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gl~v~ 221 (443)
T TIGR01862 161 AGVSQSKGHHIANIAVINDKVGTREKEITTEYDVNIIGEYNIGGDAWVMRIYLEEMGIQVV 221 (443)
T ss_pred cCCccchHHHHHHHHHHHHHhCCCCcccCCCCeEEEEccCcCcccHHHHHHHHHHcCCeEE
Confidence 43 12333333 33443 2467888885554 44577777777555543
No 149
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=37.86 E-value=3e+02 Score=24.72 Aligned_cols=133 Identities=12% Similarity=0.112 Sum_probs=77.0
Q ss_pred CCHHHHHHHHHHHHHcCCCccccccccCCCc----H--HHHHHHHHhcCCCCCeEEEeccCcCCCCCCccccCCChHHHH
Q 019203 38 VSEEDGITMIKHAFSKGITFFDTADVYGQNA----N--EVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVR 111 (344)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~----s--E~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~ 111 (344)
+|.+...+.++..++.|++-+-..-+.|.+. . ++++..+.+.. ..++-|..-++.. +.+...
T Consensus 15 iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~-~~~~~vi~gv~~~-----------~~~~~i 82 (281)
T cd00408 15 VDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAV-AGRVPVIAGVGAN-----------STREAI 82 (281)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHh-CCCCeEEEecCCc-----------cHHHHH
Confidence 5889999999999999999887666655432 2 34455555532 3445454444322 222222
Q ss_pred HHHHHHHhhcCCCceeEEEecCCCCCC-CHHHHHHHHHHHHHcCcccEEec--------CCCCHHHHHHHhhcCCcceee
Q 019203 112 SCCEASLKRLDVDYIDLYYQHRVDTSV-PIEETIGEMKKLVEEGKIKYIGL--------SEASPGTIRRAHAVHPITAVQ 182 (344)
Q Consensus 112 ~~~~~sL~~Lg~d~iDl~~lh~~~~~~-~~~e~~~~L~~l~~~G~ir~iGv--------s~~~~~~l~~~~~~~~~~~~q 182 (344)
+..+ ..+.+| +|.+++.-|.... .-+++++.+.++.+.-.+- +.+ .+.+++.+.++.+ .+.++-
T Consensus 83 ~~a~-~a~~~G---ad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~p-i~iYn~P~~tg~~l~~~~~~~L~~--~~~v~g 155 (281)
T cd00408 83 ELAR-HAEEAG---ADGVLVVPPYYNKPSQEGIVAHFKAVADASDLP-VILYNIPGRTGVDLSPETIARLAE--HPNIVG 155 (281)
T ss_pred HHHH-HHHHcC---CCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCC-EEEEECccccCCCCCHHHHHHHhc--CCCEEE
Confidence 3322 446677 4666666664332 4467778888777753222 211 2446777777765 235555
Q ss_pred ccccccc
Q 019203 183 MEWSLWT 189 (344)
Q Consensus 183 ~~~n~l~ 189 (344)
+.++..+
T Consensus 156 iK~s~~d 162 (281)
T cd00408 156 IKDSSGD 162 (281)
T ss_pred EEeCCCC
Confidence 6666533
No 150
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=37.72 E-value=1.8e+02 Score=23.76 Aligned_cols=57 Identities=21% Similarity=0.250 Sum_probs=42.8
Q ss_pred EEecCCCC--HHHHHHHhhcCCcceeeccccccccchHhhHHHHHHHhCCceeecccCccccc
Q 019203 158 YIGLSEAS--PGTIRRAHAVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFF 218 (344)
Q Consensus 158 ~iGvs~~~--~~~l~~~~~~~~~~~~q~~~n~l~~~~~~~l~~~~~~~gi~v~a~spl~~G~L 218 (344)
-+|+..|+ ...+.++++...|+++-. -+.+.+ .+.+..+-++.+.++.-|.+.++.+
T Consensus 19 k~GlDgHd~gakvia~~l~d~GfeVi~~---g~~~tp-~e~v~aA~~~dv~vIgvSsl~g~h~ 77 (143)
T COG2185 19 KLGLDGHDRGAKVIARALADAGFEVINL---GLFQTP-EEAVRAAVEEDVDVIGVSSLDGGHL 77 (143)
T ss_pred ccCccccccchHHHHHHHHhCCceEEec---CCcCCH-HHHHHHHHhcCCCEEEEEeccchHH
Confidence 46777774 467888888888886544 444444 5788889999999999999998763
No 151
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=37.67 E-value=3.4e+02 Score=25.29 Aligned_cols=94 Identities=16% Similarity=0.135 Sum_probs=54.4
Q ss_pred CCCeEEEeccCcCCCCCCccccCCChHHHHHHHHHHHhhcCCCceeEEEecCCCCC----CCH--HHHHHHHHHHHHcCc
Q 019203 82 REKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS----VPI--EETIGEMKKLVEEGK 155 (344)
Q Consensus 82 r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~----~~~--~e~~~~L~~l~~~G~ 155 (344)
.+++.|..|+...... ....+.+...+ +-+.|+..|+|+|++ |..... .+. ...++.+.++++.-.
T Consensus 219 G~d~~v~vri~~~~~~----~~g~~~~e~~~-ia~~Le~~gvd~iev---~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~ 290 (336)
T cd02932 219 PEDKPLFVRISATDWV----EGGWDLEDSVE-LAKALKELGVDLIDV---SSGGNSPAQKIPVGPGYQVPFAERIRQEAG 290 (336)
T ss_pred CCCceEEEEEcccccC----CCCCCHHHHHH-HHHHHHHcCCCEEEE---CCCCCCcccccCCCccccHHHHHHHHhhCC
Confidence 4567788888753211 11234444433 334567778666653 421110 111 123466677777667
Q ss_pred ccEEecCCC-CHHHHHHHhhcCCcceeec
Q 019203 156 IKYIGLSEA-SPGTIRRAHAVHPITAVQM 183 (344)
Q Consensus 156 ir~iGvs~~-~~~~l~~~~~~~~~~~~q~ 183 (344)
+--++..+. +++.++++++....+.+++
T Consensus 291 iPVi~~G~i~t~~~a~~~l~~g~aD~V~~ 319 (336)
T cd02932 291 IPVIAVGLITDPEQAEAILESGRADLVAL 319 (336)
T ss_pred CCEEEeCCCCCHHHHHHHHHcCCCCeehh
Confidence 777777775 7888888888777777765
No 152
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=37.40 E-value=3.5e+02 Score=25.55 Aligned_cols=133 Identities=17% Similarity=0.239 Sum_probs=77.7
Q ss_pred CCHHHHHHHHHHHHHcC-CCccccccccCCCcHHHHHHHHHhcCC-CCCeEEEeccCcCCCCCCccccCCChHHHHHHHH
Q 019203 38 VSEEDGITMIKHAFSKG-ITFFDTADVYGQNANEVLLGKALKQLP-REKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCE 115 (344)
Q Consensus 38 ~~~~~~~~~l~~A~~~G-in~~Dta~~Yg~g~sE~~lg~~l~~~~-r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (344)
.+.++..+.-+.|-+.| .+|...|..++.|+.-..+-++++.+. --.+-+.--+|- .+.+..
T Consensus 84 ~~~eeIle~Ak~ak~~Ga~r~c~~aagr~~~~~~~~i~~~v~~Vk~~~~le~c~slG~-----------l~~eq~----- 147 (335)
T COG0502 84 MEVEEILEAAKKAKAAGATRFCMGAAGRGPGRDMEEVVEAIKAVKEELGLEVCASLGM-----------LTEEQA----- 147 (335)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEEEeccCCCccHHHHHHHHHHHHHhcCcHHhhccCC-----------CCHHHH-----
Confidence 35666677777777889 888888888874444445555555421 222333333331 233332
Q ss_pred HHHhhcCCCceeEEEecCCCC----------CCCHHHHHHHHHHHHHcCcccE----EecCCCCHHHHHHHhhcCCcc-e
Q 019203 116 ASLKRLDVDYIDLYYQHRVDT----------SVPIEETIGEMKKLVEEGKIKY----IGLSEASPGTIRRAHAVHPIT-A 180 (344)
Q Consensus 116 ~sL~~Lg~d~iDl~~lh~~~~----------~~~~~e~~~~L~~l~~~G~ir~----iGvs~~~~~~l~~~~~~~~~~-~ 180 (344)
+-|+.-|+|+ |-|+.+. ...+++-++.++.+++.|.=-. +|+.+-..+++.-+....... .
T Consensus 148 ~~L~~aGvd~----ynhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~p 223 (335)
T COG0502 148 EKLADAGVDR----YNHNLETSPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLPTP 223 (335)
T ss_pred HHHHHcChhh----eecccccCHHHHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHHHHHHHHHhCCCC
Confidence 3577788776 5565543 3467899999999999987443 455554444454444432222 4
Q ss_pred eecccccccc
Q 019203 181 VQMEWSLWTR 190 (344)
Q Consensus 181 ~q~~~n~l~~ 190 (344)
-.+++|.+.+
T Consensus 224 dsVPIn~l~P 233 (335)
T COG0502 224 DSVPINFLNP 233 (335)
T ss_pred CeeeeeeecC
Confidence 4566676665
No 153
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=36.81 E-value=71 Score=21.88 Aligned_cols=17 Identities=12% Similarity=0.425 Sum_probs=15.2
Q ss_pred HHHHHHHHcCCCHHHHH
Q 019203 253 RIGNLAKKYNCTSAQLA 269 (344)
Q Consensus 253 ~l~~ia~~~~~s~aqla 269 (344)
.+.+||+++|++..++-
T Consensus 24 ~lkdIA~~Lgvs~~tIr 40 (60)
T PF10668_consen 24 KLKDIAEKLGVSESTIR 40 (60)
T ss_pred cHHHHHHHHCCCHHHHH
Confidence 68999999999999875
No 154
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=36.80 E-value=1.1e+02 Score=26.46 Aligned_cols=90 Identities=18% Similarity=0.213 Sum_probs=55.0
Q ss_pred HhhcCCCceeEEEec-CCCCC-CCHHH----HHHHHHHHHH--cCcccEEecCCCCHHHHHHHhhcCCcceeeccccccc
Q 019203 118 LKRLDVDYIDLYYQH-RVDTS-VPIEE----TIGEMKKLVE--EGKIKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWT 189 (344)
Q Consensus 118 L~~Lg~d~iDl~~lh-~~~~~-~~~~e----~~~~L~~l~~--~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~l~ 189 (344)
+..-|.++||+---- +|... .+.++ +...++.+++ .+. -|.+-++.++.++.+++. ..+.+-...+. .
T Consensus 28 ~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~--plSIDT~~~~v~~~aL~~-g~~~ind~~~~-~ 103 (210)
T PF00809_consen 28 QVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDV--PLSIDTFNPEVAEAALKA-GADIINDISGF-E 103 (210)
T ss_dssp HHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTS--EEEEEESSHHHHHHHHHH-TSSEEEETTTT-S
T ss_pred HHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCe--EEEEECCCHHHHHHHHHc-CcceEEecccc-c
Confidence 344589999997543 33322 22233 3444555554 233 567778899999999988 54443222222 1
Q ss_pred cchHhhHHHHHHHhCCceeecccC
Q 019203 190 RDIEEEIIPLCRELGIGIVPYSPL 213 (344)
Q Consensus 190 ~~~~~~l~~~~~~~gi~v~a~spl 213 (344)
. ..++++.++++|..++++..-
T Consensus 104 ~--~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 104 D--DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp S--STTHHHHHHHHTSEEEEESES
T ss_pred c--cchhhhhhhcCCCEEEEEecc
Confidence 1 357999999999999886544
No 155
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=36.67 E-value=3.7e+02 Score=25.30 Aligned_cols=137 Identities=12% Similarity=0.071 Sum_probs=70.8
Q ss_pred CCHHHHHHHHH-------HHHHcCCCcccc--c-----------------cccCCCcHH---HHHHHHHhcCCC-CCeEE
Q 019203 38 VSEEDGITMIK-------HAFSKGITFFDT--A-----------------DVYGQNANE---VLLGKALKQLPR-EKIQV 87 (344)
Q Consensus 38 ~~~~~~~~~l~-------~A~~~Gin~~Dt--a-----------------~~Yg~g~sE---~~lg~~l~~~~r-~~~~i 87 (344)
.+.++..++++ .|.++|+..++- | +.|| |.-| +++-+.++.+++ -++-|
T Consensus 132 mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yG-GslenR~Rf~~eii~~ir~~~~~~v 210 (337)
T PRK13523 132 MTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYG-GSPENRYRFLREIIDAVKEVWDGPL 210 (337)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCC-CCHHHHHHHHHHHHHHHHHhcCCCe
Confidence 46666666655 445679988874 2 1334 2222 333333333111 13446
Q ss_pred EeccCcCCCCCCccccCCChHHHHHHHHHHHhhcCCCceeEEEecCCCC---CC--CHHHHHHHHHHHHHcCcccEEecC
Q 019203 88 ATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDT---SV--PIEETIGEMKKLVEEGKIKYIGLS 162 (344)
Q Consensus 88 ~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~---~~--~~~e~~~~L~~l~~~G~ir~iGvs 162 (344)
.-|+...... ....+.+.... +-+.|+..|+|+|++ |.-.. .. .....++....+++.-++--+++.
T Consensus 211 ~vRis~~d~~----~~G~~~~e~~~-i~~~l~~~gvD~i~v---s~g~~~~~~~~~~~~~~~~~~~~ik~~~~ipVi~~G 282 (337)
T PRK13523 211 FVRISASDYH----PGGLTVQDYVQ-YAKWMKEQGVDLIDV---SSGAVVPARIDVYPGYQVPFAEHIREHANIATGAVG 282 (337)
T ss_pred EEEecccccC----CCCCCHHHHHH-HHHHHHHcCCCEEEe---CCCCCCCCCCCCCccccHHHHHHHHhhcCCcEEEeC
Confidence 6676543211 11244444433 333456667655554 43221 10 111235566677777677777777
Q ss_pred CC-CHHHHHHHhhcCCcceeec
Q 019203 163 EA-SPGTIRRAHAVHPITAVQM 183 (344)
Q Consensus 163 ~~-~~~~l~~~~~~~~~~~~q~ 183 (344)
.. +++.++++++....|.+.+
T Consensus 283 ~i~~~~~a~~~l~~g~~D~V~~ 304 (337)
T PRK13523 283 LITSGAQAEEILQNNRADLIFI 304 (337)
T ss_pred CCCCHHHHHHHHHcCCCChHHh
Confidence 65 6777888888776666544
No 156
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=36.60 E-value=1.9e+02 Score=28.42 Aligned_cols=60 Identities=20% Similarity=0.232 Sum_probs=39.1
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEEe-cCCCCC----------C-CHHHH----HHHHHHHHHcCcccEEecCCCCH
Q 019203 105 GAPDYVRSCCEASLKRLDVDYIDLYYQ-HRVDTS----------V-PIEET----IGEMKKLVEEGKIKYIGLSEASP 166 (344)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~d~iDl~~l-h~~~~~----------~-~~~e~----~~~L~~l~~~G~ir~iGvs~~~~ 166 (344)
-+.+.+.+.++..+ .|+.++|.+|.+ |.|... . ..++. ..+.+.|.+.|- ..+|+++|..
T Consensus 216 qt~e~~~~tl~~~~-~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy-~~~~~~~far 291 (453)
T PRK13347 216 QTVESFRETLDKVI-ALSPDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGY-VPIGLDHFAL 291 (453)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCC-EEEeccceeC
Confidence 57888888887555 699999999866 333210 1 12222 235667778886 5699999854
No 157
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=36.56 E-value=1.8e+02 Score=31.46 Aligned_cols=73 Identities=14% Similarity=0.040 Sum_probs=57.7
Q ss_pred cCCChHHHHHHHHHHHhhcCC--------------------------CceeEEEecCCCCCCCH---HHHHHHHHHHHHc
Q 019203 103 VKGAPDYVRSCCEASLKRLDV--------------------------DYIDLYYQHRVDTSVPI---EETIGEMKKLVEE 153 (344)
Q Consensus 103 ~~~~~~~i~~~~~~sL~~Lg~--------------------------d~iDl~~lh~~~~~~~~---~e~~~~L~~l~~~ 153 (344)
.+.....+.+.++.+|+.+|+ ....+++|..|....+. ..+|+.+.++++.
T Consensus 668 rG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~ 747 (885)
T KOG0059|consen 668 RGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKN 747 (885)
T ss_pred cCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 445677788889999988774 34567788887655443 5899999999999
Q ss_pred CcccEEecCCCCHHHHHHHhhcCC
Q 019203 154 GKIKYIGLSEASPGTIRRAHAVHP 177 (344)
Q Consensus 154 G~ir~iGvs~~~~~~l~~~~~~~~ 177 (344)
|+ ++=+.+|+.++.+.+.....
T Consensus 748 g~--aiiLTSHsMeE~EaLCtR~a 769 (885)
T KOG0059|consen 748 GK--AIILTSHSMEEAEALCTRTA 769 (885)
T ss_pred CC--EEEEEcCCHHHHHHHhhhhh
Confidence 99 99999999999988877644
No 158
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=36.08 E-value=3.1e+02 Score=24.34 Aligned_cols=86 Identities=9% Similarity=0.009 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHHHHcCCCccccccccCCCc--HHHHHHHHHhcCCCCC-eEEEeccCcCCCCCCccccCCChHHHHHHHH
Q 019203 39 SEEDGITMIKHAFSKGITFFDTADVYGQNA--NEVLLGKALKQLPREK-IQVATKFGIAGIGVAGVIVKGAPDYVRSCCE 115 (344)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~--sE~~lg~~l~~~~r~~-~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (344)
+.+++.+.+..+...+.+.++.--.|-... ......+ +.+...++ +.++-+- ... +.....+.+.-.+-++
T Consensus 12 ~~~~~~e~~~~~~~~~~Di~E~RvD~l~~~~~~~~~~~~-~~e~~~~~~~IfT~R~-~~E----GG~~~~~~~~~i~ll~ 85 (231)
T COG0710 12 DIAELKEQAEKSKELDADIVELRVDLLESNVEVLEVAKA-LREKDPDKPLIFTFRT-VKE----GGEFPGSEEEYIELLK 85 (231)
T ss_pred CHHHHHHHHHHhhccCCCEEEEeechhcccchHHHHHHH-HHHhccCCceEEEEee-hhh----cCCCCCCHHHHHHHHH
Confidence 678888899999999998888766564421 2233333 33333444 4444441 111 1123356666667777
Q ss_pred HHHhhcCCCceeEEE
Q 019203 116 ASLKRLDVDYIDLYY 130 (344)
Q Consensus 116 ~sL~~Lg~d~iDl~~ 130 (344)
...+.-+.||+|+=+
T Consensus 86 ~la~~~~~d~iDiEl 100 (231)
T COG0710 86 KLAELNGPDYIDIEL 100 (231)
T ss_pred HHHhhcCCCEEEEEc
Confidence 777766789999743
No 159
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=35.52 E-value=3.2e+02 Score=26.45 Aligned_cols=144 Identities=15% Similarity=0.160 Sum_probs=83.5
Q ss_pred CHHHHHHHHHHHHHcCCCc-cccccccCCCcHHHHHHHHHhcCCCCCeEEEeccCcCCC--CCCccccCCChHHHHHHHH
Q 019203 39 SEEDGITMIKHAFSKGITF-FDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGI--GVAGVIVKGAPDYVRSCCE 115 (344)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~-~Dta~~Yg~g~sE~~lg~~l~~~~r~~~~i~tK~~~~~~--~~~~~~~~~~~~~i~~~~~ 115 (344)
+.+.-.+-++.|++.|-.. .|-+ ..|+ -..+=.+.|+. ..+-|-| +..+.. ...+...+.+++.+.+.++
T Consensus 75 d~~~E~~K~~~A~~~GADtiMDLS-tGgd--l~~iR~~il~~---s~vpvGT-VPiYqa~~~~~~~~~~mt~d~~~~~ie 147 (423)
T TIGR00190 75 DIEEEVEKALIAIKYGADTVMDLS-TGGD--LDEIRKAILDA---VPVPVGT-VPIYQAAEKVHGAVEDMDEDDMFRAIE 147 (423)
T ss_pred CHHHHHHHHHHHHHcCCCeEeecc-CCCC--HHHHHHHHHHc---CCCCccC-ccHHHHHHHhcCChhhCCHHHHHHHHH
Confidence 5555667799999999753 3433 2332 33333333332 2222222 111100 0001234688888888888
Q ss_pred HHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhcCCcceeeccccccccchHhh
Q 019203 116 ASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDIEEE 195 (344)
Q Consensus 116 ~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~l~~~~~~~ 195 (344)
+..+. =+|.+.||.- -+.+.++.+++.|+ ..|+-+-....+...+.... .=|+++... ..
T Consensus 148 ~qa~d----GVDfmTiH~G-------i~~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~~~------~ENPlye~f-D~ 207 (423)
T TIGR00190 148 KQAKD----GVDFMTIHAG-------VLLEYVERLKRSGR--ITGIVSRGGAILAAWMLHHH------KENPLYKNF-DY 207 (423)
T ss_pred HHHHh----CCCEEEEccc-------hhHHHHHHHHhCCC--ccCeecCcHHHHHHHHHHcC------CcCchHHHH-HH
Confidence 77763 4788999983 24567888888884 66776655555555443322 234555443 46
Q ss_pred HHHHHHHhCCceee
Q 019203 196 IIPLCRELGIGIVP 209 (344)
Q Consensus 196 l~~~~~~~gi~v~a 209 (344)
+++.|+++++.+--
T Consensus 208 lLeI~~~yDVtlSL 221 (423)
T TIGR00190 208 ILEIAKEYDVTLSL 221 (423)
T ss_pred HHHHHHHhCeeeec
Confidence 89999999998743
No 160
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=35.47 E-value=89 Score=22.67 Aligned_cols=30 Identities=23% Similarity=0.387 Sum_probs=25.3
Q ss_pred hhhHHHHHHHHHHHHHcCCCHHHHHHHHHHh
Q 019203 245 DRNKSIYFRIGNLAKKYNCTSAQLALAWVLG 275 (344)
Q Consensus 245 ~~~~~~~~~l~~ia~~~~~s~aqlal~~~l~ 275 (344)
+...+.+..|.+||++.|++.++||. |+|.
T Consensus 48 ~~V~~sl~kL~~La~~N~v~feeLc~-YAL~ 77 (82)
T PF11020_consen 48 EKVMDSLSKLYKLAKENNVSFEELCV-YALG 77 (82)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHH-HHHH
Confidence 56678889999999999999999887 5543
No 161
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=35.44 E-value=4.1e+02 Score=25.45 Aligned_cols=39 Identities=15% Similarity=0.033 Sum_probs=23.3
Q ss_pred HHHHHHHHcCcccEEecCCC-CHHHHHHHhhcCCcceeec
Q 019203 145 GEMKKLVEEGKIKYIGLSEA-SPGTIRRAHAVHPITAVQM 183 (344)
Q Consensus 145 ~~L~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q~ 183 (344)
.....+++.=.+--+++..+ +++.++++++....+.+.+
T Consensus 295 ~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~ 334 (382)
T cd02931 295 PYCKALKEVVDVPVIMAGRMEDPELASEAINEGIADMISL 334 (382)
T ss_pred HHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcCCCCeeee
Confidence 34444454434566666665 6677777777666666544
No 162
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=35.43 E-value=3.1e+02 Score=25.29 Aligned_cols=73 Identities=12% Similarity=0.005 Sum_probs=49.2
Q ss_pred HHHHHHHHcCccc-EEecCCCCHHHHHHHhhcCCcceeeccccccccc-hHhhHHHHHHHhCCceeecccCcccc
Q 019203 145 GEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYSPLGRGF 217 (344)
Q Consensus 145 ~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~l~~~-~~~~l~~~~~~~gi~v~a~spl~~G~ 217 (344)
+.+..|.+.-.+. +.|=|-++.+.+.+++.....+++|+.....-.- ....+...|+.+||.++..+.+..|+
T Consensus 196 ~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~~~~d~i~ik~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~es~i 270 (307)
T TIGR01927 196 DEMSAFSEATGTAIALDESLWELPQLADEYGPGWRGALVIKPAIIGSPAKLRDLAQKAHRLGLQAVFSSVFESSI 270 (307)
T ss_pred HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhcCCCceEEECchhcCCHHHHHHHHHHHHHcCCCEEEECccchHH
Confidence 4455555543322 3444556778888888877778888876654321 12678999999999999887776554
No 163
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=35.41 E-value=3.4e+02 Score=24.51 Aligned_cols=115 Identities=17% Similarity=0.220 Sum_probs=60.1
Q ss_pred CCHHHHHHHHHHHHHcCCCccccccccCCCc---------HHHHHHHHHhcC-CCCCeEEEeccCcCCCCCCccccCCCh
Q 019203 38 VSEEDGITMIKHAFSKGITFFDTADVYGQNA---------NEVLLGKALKQL-PREKIQVATKFGIAGIGVAGVIVKGAP 107 (344)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~---------sE~~lg~~l~~~-~r~~~~i~tK~~~~~~~~~~~~~~~~~ 107 (344)
.+.++..++....-+.||..++...--+.+. .++.+-+..+.. ++.++........ ...
T Consensus 17 f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----------~~~ 85 (266)
T cd07944 17 FGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGN-----------DDI 85 (266)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCC-----------CCH
Confidence 3778889999998999999999863222111 245666655532 2444444444321 112
Q ss_pred HHHHHHHHHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEEecC---CCCHHHHHHHh
Q 019203 108 DYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS---EASPGTIRRAH 173 (344)
Q Consensus 108 ~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~iGvs---~~~~~~l~~~~ 173 (344)
+.+.. + ...|++.|-+.. ....++.+.+.++..++.|..-.+++. .++++.+.++.
T Consensus 86 ~~l~~----a-~~~gv~~iri~~-----~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~ 144 (266)
T cd07944 86 DLLEP----A-SGSVVDMIRVAF-----HKHEFDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELL 144 (266)
T ss_pred HHHHH----H-hcCCcCEEEEec-----ccccHHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHH
Confidence 22222 1 233444433322 223566677777777777754444432 24455444433
No 164
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=35.05 E-value=2.9e+02 Score=26.21 Aligned_cols=29 Identities=21% Similarity=0.160 Sum_probs=22.1
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEecC
Q 019203 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHR 133 (344)
Q Consensus 104 ~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~ 133 (344)
.-+.+.+++.++.. ..|+.+++.+|.+.-
T Consensus 171 gqt~~~~~~tl~~~-~~l~~~~i~~y~l~~ 199 (375)
T PRK05628 171 GESDDDWRASLDAA-LEAGVDHVSAYALIV 199 (375)
T ss_pred CCCHHHHHHHHHHH-HhcCCCEEEeeeeec
Confidence 35778888888744 469999999988763
No 165
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=34.49 E-value=1.3e+02 Score=28.59 Aligned_cols=107 Identities=13% Similarity=0.173 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHcCcccEEecCCCCHH----HHHHHhhcCCcceeeccccccccchHhhHHHHHHHhCCceeecccCcccc
Q 019203 142 ETIGEMKKLVEEGKIKYIGLSEASPG----TIRRAHAVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGF 217 (344)
Q Consensus 142 e~~~~L~~l~~~G~ir~iGvs~~~~~----~l~~~~~~~~~~~~q~~~n~l~~~~~~~l~~~~~~~gi~v~a~spl~~G~ 217 (344)
+-.+++.+|.+.|.+.+|-.-- -.| .+.+... ..+. --|.....+..+.+++.|+++||.|+.-+ +|.
T Consensus 10 D~~~a~~~l~~~g~~d~l~~d~-LaE~tma~~~~~~~-~~p~---~gY~~~~~~~L~~~L~~~~~~gIkvI~Na---Gg~ 81 (362)
T PF07287_consen 10 DRPDAAVRLARGGDVDYLVGDY-LAERTMAILARAKR-KDPT---KGYAPDFVRDLRPLLPAAAEKGIKVITNA---GGL 81 (362)
T ss_pred CcHHHHHHHHhcCCCCEEEEec-HHHHHHHHHHHHHh-hCCC---CCchHHHHHHHHHHHHHHHhCCCCEEEeC---CCC
Confidence 3456677777788888876532 122 1111111 1111 22433333333689999999999998853 222
Q ss_pred cCCCCCCCCCCCCcccccccCCcCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHh
Q 019203 218 FGGKAVVENVPADSFLHFLPRFKGENLDRNKSIYFRIGNLAKKYNCTSAQLALAWVLGQGDDVVPIPGTTKMKNLDDNID 297 (344)
Q Consensus 218 L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~aqlal~~~l~~~~v~~vi~G~~~~~~l~enl~ 297 (344)
. .....+.+++++++.|.+ .. ..+|-|=...+.+.+.++
T Consensus 82 -n---------------------------p~~~a~~v~eia~e~Gl~-lk------------vA~V~gDd~~~~v~~~~~ 120 (362)
T PF07287_consen 82 -N---------------------------PAGCADIVREIARELGLS-LK------------VAVVYGDDLKDEVKELLA 120 (362)
T ss_pred -C---------------------------HHHHHHHHHHHHHhcCCC-ee------------EEEEECccchHhHHHHHh
Confidence 1 123667889999998864 11 244555555555555443
No 166
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=34.47 E-value=4e+02 Score=25.05 Aligned_cols=68 Identities=15% Similarity=0.069 Sum_probs=33.6
Q ss_pred HHHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhcCCcceeec
Q 019203 114 CEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAVQM 183 (344)
Q Consensus 114 ~~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~ 183 (344)
+-+.|+..|+|+|++- |.........-.++....+++.=.+--+++..++++.++++++....+.+.+
T Consensus 246 ~~~~l~~~g~d~i~vs--~g~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i~~~~a~~~l~~g~~D~V~~ 313 (338)
T cd02933 246 LAKELNKRGLAYLHLV--EPRVAGNPEDQPPDFLDFLRKAFKGPLIAAGGYDAESAEAALADGKADLVAF 313 (338)
T ss_pred HHHHHHHcCCcEEEEe--cCCCCCcccccchHHHHHHHHHcCCCEEEECCCCHHHHHHHHHcCCCCEEEe
Confidence 4445566676666652 1111010111223444444444456666666666666666666655555544
No 167
>PRK05588 histidinol-phosphatase; Provisional
Probab=34.29 E-value=3.3e+02 Score=24.14 Aligned_cols=79 Identities=15% Similarity=0.217 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHcCCCccccccccCC----C-----cHHHHHHHHHhcCCCCCeEEEeccCcCCCCCCccccCCChHHHH
Q 019203 41 EDGITMIKHAFSKGITFFDTADVYGQ----N-----ANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVR 111 (344)
Q Consensus 41 ~~~~~~l~~A~~~Gin~~Dta~~Yg~----g-----~sE~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~ 111 (344)
....+.+++|.+.|+..+ .++|.-. . .-+..+-+ +++.+.-++.+---++ ..++ ..
T Consensus 16 ~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~~~-i~~~~~~~I~~GiE~~------------~~~~-~~ 80 (255)
T PRK05588 16 MKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYFNK-YSKYRNNKLLLGIELG------------MEKD-LI 80 (255)
T ss_pred cCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHHHH-HHHHhcCCcceEEEec------------ccCC-CH
Confidence 346799999999999988 7766311 0 01122221 1212222333322222 2222 24
Q ss_pred HHHHHHHhhcCCCceeEEEecCCC
Q 019203 112 SCCEASLKRLDVDYIDLYYQHRVD 135 (344)
Q Consensus 112 ~~~~~sL~~Lg~d~iDl~~lh~~~ 135 (344)
..+++.|++...||+ +.-+|+.+
T Consensus 81 ~~~~~~l~~~~~D~v-igSvH~~~ 103 (255)
T PRK05588 81 EENKELINKYEFDYV-IGSIHLVD 103 (255)
T ss_pred HHHHHHHhhCCCCeE-EEeEEeeC
Confidence 555778888888887 88999864
No 168
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=34.13 E-value=4.3e+02 Score=25.36 Aligned_cols=145 Identities=13% Similarity=0.102 Sum_probs=68.3
Q ss_pred CHHHHHHHHHHHHHcCCCccccccccCCCcHHHHHHHHHhc-----CCCCCeEEEeccCcCCCCCCccccCCChHHHHHH
Q 019203 39 SEEDGITMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ-----LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSC 113 (344)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~sE~~lg~~l~~-----~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~ 113 (344)
...+..+.|+.++++|+- ...|+..+--+.+-.+.++ .+.+.++++.- +...
T Consensus 39 ~pp~i~~Al~~rvdhGvf----GY~~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~-------------------VVpg 95 (388)
T COG1168 39 TPPEIIEALRERVDHGVF----GYPYGSDELYAAIAHWFKQRHQWEIKPEWIVFVPG-------------------VVPG 95 (388)
T ss_pred CCHHHHHHHHHHHhcCCC----CCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEcCc-------------------chHh
Confidence 356788999999999973 3335532112334445543 23333333332 2333
Q ss_pred HHHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcc-cEE----ecCCC--CHHHHHHHhhcCC--cceeecc
Q 019203 114 CEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKI-KYI----GLSEA--SPGTIRRAHAVHP--ITAVQME 184 (344)
Q Consensus 114 ~~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~i-r~i----Gvs~~--~~~~l~~~~~~~~--~~~~q~~ 184 (344)
+...++.| |+-=|-+.++.|--. ++-. ..+..|+= -.. +=.-+ +-+.+++.+.... .-+.-.+
T Consensus 96 i~~~I~~~-T~~gd~Vvi~tPvY~-PF~~------~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnP 167 (388)
T COG1168 96 ISLAIRAL-TKPGDGVVIQTPVYP-PFYN------AIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNP 167 (388)
T ss_pred HHHHHHHh-CcCCCeeEecCCCch-HHHH------HHhhcCcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCC
Confidence 34444444 233477888887432 1111 11111110 000 00011 4455555555433 2222234
Q ss_pred cccccc----chHhhHHHHHHHhCCceeecccCc
Q 019203 185 WSLWTR----DIEEEIIPLCRELGIGIVPYSPLG 214 (344)
Q Consensus 185 ~n~l~~----~~~~~l~~~~~~~gi~v~a~spl~ 214 (344)
.|+.-+ +....+.+.|+++||.||+=-.-+
T Consensus 168 HNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHa 201 (388)
T COG1168 168 HNPTGRVWTKEELRKIAELCLRHGVRVISDEIHA 201 (388)
T ss_pred CCCCCccccHHHHHHHHHHHHHcCCEEEeecccc
Confidence 444333 222678888999999988744333
No 169
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=33.96 E-value=1.9e+02 Score=27.22 Aligned_cols=73 Identities=19% Similarity=0.106 Sum_probs=51.2
Q ss_pred HHHHHHHHHcCccc-EEecCCCCHHHHHHHhhcCCcceeeccccccccc-hHhhHHHHHHHhCCceeecccCccc
Q 019203 144 IGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYSPLGRG 216 (344)
Q Consensus 144 ~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~l~~~-~~~~l~~~~~~~gi~v~a~spl~~G 216 (344)
++.+.+|++.-.+. +.|=|-++.+.+..+++...++++|+..+..-.- ....+..+|+.+|+.++..+.+..|
T Consensus 217 ~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~~~ik~~~~GGit~~~~i~~~A~~~gi~~~~g~~~es~ 291 (354)
T cd03317 217 LIDHAELQKLLKTPICLDESIQSAEDARKAIELGACKIINIKPGRVGGLTEALKIHDLCQEHGIPVWCGGMLESG 291 (354)
T ss_pred HHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCcEEecCcccch
Confidence 55666676554322 5555667889999999888889999876654321 1267899999999999876555433
No 170
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=33.65 E-value=4.1e+02 Score=24.98 Aligned_cols=24 Identities=8% Similarity=0.138 Sum_probs=21.4
Q ss_pred CCHHHHHHHHHHHHHcCCCccccc
Q 019203 38 VSEEDGITMIKHAFSKGITFFDTA 61 (344)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~Dta 61 (344)
.+.++..++++..-+.||..++.+
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVT 45 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEee
Confidence 477889999999999999999985
No 171
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=33.50 E-value=4.1e+02 Score=24.96 Aligned_cols=60 Identities=15% Similarity=0.110 Sum_probs=37.4
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEEecCCCCC---------CCHHHHH-HHHHHHHHcCcccEEecCCCCH
Q 019203 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS---------VPIEETI-GEMKKLVEEGKIKYIGLSEASP 166 (344)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~---------~~~~e~~-~~L~~l~~~G~ir~iGvs~~~~ 166 (344)
-+.+.+++.++.. .+|+.+++.+|.+.--..+ .+.++.+ .+.+.|.+.|- .++++|||..
T Consensus 162 qt~~~~~~~l~~~-~~l~~~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~l~~~Gy-~~yeis~fa~ 231 (350)
T PRK08446 162 DNKKLLKEELKLA-KELPINHLSAYSLTIEENTPFFEKNHKKKDDENLAKFFIEQLEELGF-KQYEISNFGK 231 (350)
T ss_pred CCHHHHHHHHHHH-HhcCCCEEEeccceecCCChhHHhhhcCCCHHHHHHHHHHHHHHCCC-cEEEeehhhC
Confidence 5677788888754 4599999999877642211 1112333 34555666674 5788888743
No 172
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=33.45 E-value=4.1e+02 Score=24.88 Aligned_cols=107 Identities=12% Similarity=0.081 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHhhcCCCceeEEEecCCCCCC-CHHHHHHHHHHHHHcCcccEEecCC---------CCHHHHHHHhhcC
Q 019203 107 PDYVRSCCEASLKRLDVDYIDLYYQHRVDTSV-PIEETIGEMKKLVEEGKIKYIGLSE---------ASPGTIRRAHAVH 176 (344)
Q Consensus 107 ~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~-~~~e~~~~L~~l~~~G~ir~iGvs~---------~~~~~l~~~~~~~ 176 (344)
.+.+.+.++...+.-++ -++++-.. ++.. .-..+.+.++.+.+-+.++.|.++. .+.+.+ +.++..
T Consensus 144 ~~~~~~~i~~i~~~~~i--~eV~lsGG-DPLl~~d~~L~~ll~~L~~i~~~~~IRi~tr~~~~~P~rit~el~-~~L~~~ 219 (331)
T TIGR00238 144 KKKWQKALDYIAEHPEI--IEILISGG-DPLMAKDHELEWLLKRLEEIPHLVRLRIGTRLPVVIPQRITDELC-ELLASF 219 (331)
T ss_pred HHHHHHHHHHHHhCCCc--CEEEEECC-ccccCCHHHHHHHHHHHHhcCCccEEEeecCCCccCchhcCHHHH-HHHHhc
Confidence 34444444443333333 34555442 3332 2223556666666666665555432 233333 344443
Q ss_pred Ccceee-ccccccc--cchHhhHHHHHHHhCCceeecccCcccc
Q 019203 177 PITAVQ-MEWSLWT--RDIEEEIIPLCRELGIGIVPYSPLGRGF 217 (344)
Q Consensus 177 ~~~~~q-~~~n~l~--~~~~~~l~~~~~~~gi~v~a~spl~~G~ 217 (344)
.+..++ ..+|--. ......-++.+++.|+.+..-+++..|.
T Consensus 220 ~~~~~~vsh~nh~~Ei~~~~~~ai~~L~~aGi~v~~qtvLl~gv 263 (331)
T TIGR00238 220 ELQLMLVTHINHCNEITEEFAEAMKKLRTVNVTLLNQSVLLRGV 263 (331)
T ss_pred CCcEEEEccCCChHhCCHHHHHHHHHHHHcCCEEEeecceECCc
Confidence 433333 3344321 0111456677889999999999999876
No 173
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=33.43 E-value=3.3e+02 Score=23.88 Aligned_cols=137 Identities=12% Similarity=0.091 Sum_probs=74.5
Q ss_pred HHHHHHHcCCCcccc-ccccCCCcHHHHHHHHHhcCCCCCeEEEeccCcCCCCCCccccCCChHHHHHHHHHHHhhcCCC
Q 019203 46 MIKHAFSKGITFFDT-ADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVD 124 (344)
Q Consensus 46 ~l~~A~~~Gin~~Dt-a~~Yg~g~sE~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d 124 (344)
.|+...+. +|.++. +..|+.- +++.+.++.++ -.+++..+-|+.....-.. .-....+.+.+.+-+.++-|| +
T Consensus 11 ~L~~Ya~~-F~~VEvn~TFY~~P-~~~t~~~W~~~-~p~~F~F~vK~~~~iTH~~--~l~~~~~~~~~~F~~~~~~L~-~ 84 (230)
T PF01904_consen 11 RLAYYARH-FNTVEVNSTFYRIP-SPETVARWREQ-TPEGFRFSVKAPQLITHER--RLRDCAEELWRRFLEALEPLG-E 84 (230)
T ss_dssp HHHHHCCT--SEEEE-HHCCSSS--HHHHHHHHCT-S-TT-EEEEE--CCCCCCC--HCGSSHHHHHHHHHHHCHHHH-T
T ss_pred HHHHHHHh-CCeEEECcccCCCC-CHHHHHHHHhh-CCCCeEEEEeccHHheecc--cccccHHHHHHHHHHHHHHHh-h
Confidence 44444444 555554 4466643 77889999886 4589999999976553100 011235666456666999999 9
Q ss_pred ceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhcCCcceeeccccccccchHhhHHHHHHHhC
Q 019203 125 YIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDIEEEIIPLCRELG 204 (344)
Q Consensus 125 ~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~l~~~~~~~l~~~~~~~g 204 (344)
.+..+++..|..-..-.+.++.|..+.+.=. ..-.-++.++---+.. .+++++++++|
T Consensus 85 klg~iL~Q~Ppsf~~~~~~~~~l~~~l~~~~-------------------~~~~~avE~R~~sW~~---~~~~~~l~~~~ 142 (230)
T PF01904_consen 85 KLGPILFQFPPSFRFTPENLERLDAFLDRLP-------------------RGFRYAVEFRHPSWFT---EEVFELLREHG 142 (230)
T ss_dssp -EEEEEEE--TT--S-HHHHHHHHHHHHHTT--------------------TS-EEEE--BGGGGC---HHHHHHHHHTT
T ss_pred cceEEEEEcCCCcCCCHHHHHHHHHHHhhcc-------------------cccceEEecCCcchhh---HHHHHHHHHcC
Confidence 9999999999864444566666665554322 1112234444332332 56888899999
Q ss_pred Cceeec
Q 019203 205 IGIVPY 210 (344)
Q Consensus 205 i~v~a~ 210 (344)
+..+.-
T Consensus 143 ~~~v~~ 148 (230)
T PF01904_consen 143 VALVIA 148 (230)
T ss_dssp -EEEEE
T ss_pred CEEEEe
Confidence 887653
No 174
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=33.39 E-value=3.6e+02 Score=24.23 Aligned_cols=106 Identities=16% Similarity=0.071 Sum_probs=67.7
Q ss_pred ccCCChHHHHHHHHHHHhhcCCCceeEEEecCCCCCC-CHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhcCCcce
Q 019203 102 IVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSV-PIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITA 180 (344)
Q Consensus 102 ~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~-~~~e~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~ 180 (344)
....+.+.-.+-.+-..+-+|++.|=|=.+..+.... +..+++++.++|+++|.+-. =+++-++...+++.+. .+++
T Consensus 70 aG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vl-pyc~dd~~~ar~l~~~-G~~~ 147 (248)
T cd04728 70 AGCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVL-PYCTDDPVLAKRLEDA-GCAA 147 (248)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHc-CCCE
Confidence 3457787777888888888899999888888776543 67899999999999998644 2444456666555554 4444
Q ss_pred eeccccccccc--h-HhhHHHHHHH-hCCceee
Q 019203 181 VQMEWSLWTRD--I-EEEIIPLCRE-LGIGIVP 209 (344)
Q Consensus 181 ~q~~~n~l~~~--~-~~~l~~~~~~-~gi~v~a 209 (344)
++.-=.+...+ . ..++++..++ .+++|++
T Consensus 148 vmPlg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~ 180 (248)
T cd04728 148 VMPLGSPIGSGQGLLNPYNLRIIIERADVPVIV 180 (248)
T ss_pred eCCCCcCCCCCCCCCCHHHHHHHHHhCCCcEEE
Confidence 43211221111 0 1344444454 3666665
No 175
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=33.39 E-value=3.7e+02 Score=28.07 Aligned_cols=103 Identities=13% Similarity=0.104 Sum_probs=71.2
Q ss_pred CCHHHHHHHHHHHHHcCCCcccccc--ccCCCcHHHHHHHHHhcCCCCCeEEEe--ccCcCCCCCCccc-------cCCC
Q 019203 38 VSEEDGITMIKHAFSKGITFFDTAD--VYGQNANEVLLGKALKQLPREKIQVAT--KFGIAGIGVAGVI-------VKGA 106 (344)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~Dta~--~Yg~g~sE~~lg~~l~~~~r~~~~i~t--K~~~~~~~~~~~~-------~~~~ 106 (344)
.|.++..+.+....+.|+.-|=.+. +|.+-.+|..+++.+++.. .++.|++ ++++......... -.--
T Consensus 136 lD~~~v~~~~~~l~~~gv~siAVs~~~S~~NP~HE~~v~eiire~~-~~i~V~~shev~p~~~~~eR~~TavlnA~L~pi 214 (674)
T COG0145 136 LDEEEVREAAAALKAAGVEAIAVSSLFSYRNPEHELRVAEIIREIG-PDIPVSLSHEVSPEIGEYERANTAVLNAYLSPI 214 (674)
T ss_pred CCHHHHHHHHHHHHhCCCcEEEEEEecccCCcHHHHHHHHHHHHhc-CCceEEechhcchhcCcccchhhheeeeeehHH
Confidence 6888999999999999999887664 7778889999999999844 6777776 8877443211100 0011
Q ss_pred hHHHHHHHHHHHhhcCCCceeEEEecCCCCCCCHHH
Q 019203 107 PDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEE 142 (344)
Q Consensus 107 ~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~e 142 (344)
....-++++..|+.-|.+ ..++++.+.....+.++
T Consensus 215 ~~~yl~~v~~~l~~~g~~-~~l~~m~sdGgl~~~~~ 249 (674)
T COG0145 215 LRRYLEAVKDALKERGIK-ARLMVMQSDGGLVSAEE 249 (674)
T ss_pred HHHHHHHHHHHHHhcCCC-ceeEEEecCCccccHHH
Confidence 233456777788888865 57888888765544443
No 176
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=33.29 E-value=2.8e+02 Score=27.34 Aligned_cols=155 Identities=15% Similarity=0.122 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHc--CCCccc-cccccCCCcHHHHHHHHHhcCCCCCeEEEeccCcCCCCCCccccCCChHHHHHHHH
Q 019203 39 SEEDGITMIKHAFSK--GITFFD-TADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCE 115 (344)
Q Consensus 39 ~~~~~~~~l~~A~~~--Gin~~D-ta~~Yg~g~sE~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (344)
+.+...+-++...+. |++.|- ..+.+.. ..+.+-+.++...+..+....-. ..+.+++.++.--+
T Consensus 228 s~e~V~~Ei~~~~~~~~~~~~i~f~Dd~f~~--~~~~~~~l~~~l~~~~i~~~~~~----------~~~~~~e~l~~l~~ 295 (472)
T TIGR03471 228 SAESVIEEVKYALENFPEVREFFFDDDTFTD--DKPRAEEIARKLGPLGVTWSCNA----------RANVDYETLKVMKE 295 (472)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEeCCCCCC--CHHHHHHHHHHHhhcCceEEEEe----------cCCCCHHHHHHHHH
Q ss_pred HHHhhc--CCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccE----EecCCCCHHHHHHHhhc-CCcceeecccccc
Q 019203 116 ASLKRL--DVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKY----IGLSEASPGTIRRAHAV-HPITAVQMEWSLW 188 (344)
Q Consensus 116 ~sL~~L--g~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~----iGvs~~~~~~l~~~~~~-~~~~~~q~~~n~l 188 (344)
.-+..+ |++..|==.|.........++..++++.+++.|.--. +|+-+.+.+.+.+.++. .......+.++++
T Consensus 296 aG~~~v~iGiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~~l~~~~~~~~~l 375 (472)
T TIGR03471 296 NGLRLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKELNPHTIQVSLA 375 (472)
T ss_pred cCCCEEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCceeeeec
Q ss_pred ccchHhhHHHHHHHhCC
Q 019203 189 TRDIEEEIIPLCRELGI 205 (344)
Q Consensus 189 ~~~~~~~l~~~~~~~gi 205 (344)
.+-+...+.+.++++|+
T Consensus 376 ~P~PGT~l~~~~~~~g~ 392 (472)
T TIGR03471 376 APYPGTELYDQAKQNGW 392 (472)
T ss_pred ccCCCcHHHHHHHHCCC
No 177
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=33.22 E-value=3.9e+02 Score=24.99 Aligned_cols=72 Identities=11% Similarity=0.124 Sum_probs=49.5
Q ss_pred HHHHHHHHHcCccc-EEecCCCCHHHHHHHhhcCCcceeeccccccccchHhhHHHHHHHhCCceeecccCcccc
Q 019203 144 IGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGF 217 (344)
Q Consensus 144 ~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~l~~~~~~~l~~~~~~~gi~v~a~spl~~G~ 217 (344)
++.+.+|.++-.+. +.|=|-++.+.+.++++....+++|+..+.+-. . .++++.|+.+||.++..|.+..++
T Consensus 173 ~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~~a~dvi~ik~~~~GG-i-t~~lkiA~~~gi~v~v~s~~es~i 245 (327)
T PRK02901 173 VEELAELRRRVGVPIAADESIRRAEDPLRVARAGAADVAVLKVAPLGG-V-RAALDIAEQIGLPVVVSSALDTSV 245 (327)
T ss_pred HHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCcchhCC-H-HHHHHHHHHcCCcEEEeCCcccHH
Confidence 45555665543333 333345677788888888888999988776543 2 467788999999999887776543
No 178
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=32.99 E-value=2.3e+02 Score=23.51 Aligned_cols=88 Identities=18% Similarity=0.151 Sum_probs=57.6
Q ss_pred EEecCCCCCCCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhcCC--cceeeccccccccc-----hHhhHHHHHH
Q 019203 129 YYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHP--ITAVQMEWSLWTRD-----IEEEIIPLCR 201 (344)
Q Consensus 129 ~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~--~~~~q~~~n~l~~~-----~~~~l~~~~~ 201 (344)
+|+..|... ..+++++...+=-++.-|++|-|.+.+.....++++..+ +.++-+.|+.-... .+.++-+..+
T Consensus 2 ~yf~~pG~e-NT~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~ 80 (186)
T COG1751 2 VYFEKPGKE-NTDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGDLKVVVVTHHAGFEEKGTQEMDEEVRKELK 80 (186)
T ss_pred ccccCCccc-chHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccCceEEEEEeecccccCCceecCHHHHHHHH
Confidence 345555444 346777776666677889999998777666666655532 44666666654443 2367888899
Q ss_pred HhCCceeecccCcccc
Q 019203 202 ELGIGIVPYSPLGRGF 217 (344)
Q Consensus 202 ~~gi~v~a~spl~~G~ 217 (344)
++|..|..-|-...|.
T Consensus 81 erGa~v~~~sHalSg~ 96 (186)
T COG1751 81 ERGAKVLTQSHALSGV 96 (186)
T ss_pred HcCceeeeehhhhhcc
Confidence 9999988755444443
No 179
>PRK05414 urocanate hydratase; Provisional
Probab=32.99 E-value=1.4e+02 Score=29.71 Aligned_cols=117 Identities=18% Similarity=0.191 Sum_probs=77.6
Q ss_pred HHHHHHHHcCCCccc--cccccC--------CCcHHHHHHHHHhc---CCCCCeEEEeccCcCCCCCC---------ccc
Q 019203 45 TMIKHAFSKGITFFD--TADVYG--------QNANEVLLGKALKQ---LPREKIQVATKFGIAGIGVA---------GVI 102 (344)
Q Consensus 45 ~~l~~A~~~Gin~~D--ta~~Yg--------~g~sE~~lg~~l~~---~~r~~~~i~tK~~~~~~~~~---------~~~ 102 (344)
+-++..-+.|+..+= ||-+|- .|--|.++.-+-+. ..+.++|+++=+|-.....+ ...
T Consensus 116 e~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~a~rk~f~g~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~ 195 (556)
T PRK05414 116 EHFNELEAKGLTMYGQMTAGSWIYIGSQGIVQGTYETFAEAARQHFGGDLAGRLVLTAGLGGMGGAQPLAATMAGAVCLA 195 (556)
T ss_pred HHHHHHHHcccccccCccccceeEEcCceeeecHHHHHHHHHHHhcCCCCceeEEEEecCCccccccHHHHHhcCceEEE
Confidence 455666677887664 555441 14456555444332 24677899988876543221 011
Q ss_pred cCCChHHHHHHHHHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhc
Q 019203 103 VKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV 175 (344)
Q Consensus 103 ~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 175 (344)
...++. +.-+|+.+.|+|.+ ..+++|+++..++.+++|+..+||+-.--.+.++++.+.
T Consensus 196 vEvd~~-------ri~kR~~~gyld~~-------~~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~ 254 (556)
T PRK05414 196 VEVDES-------RIDKRLRTGYLDEK-------ADDLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRR 254 (556)
T ss_pred EEECHH-------HHHHHHhCCcceeE-------cCCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHc
Confidence 223343 44567778898865 357899999999999999999999988777888887776
No 180
>PLN02540 methylenetetrahydrofolate reductase
Probab=32.97 E-value=5.5e+02 Score=26.20 Aligned_cols=149 Identities=12% Similarity=0.137 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHcCCCccccccccCCCcHHHHHHHH--HhcCCCCCeEEEeccCcCCCCCCccccCCChHHHHHHHHHHH
Q 019203 41 EDGITMIKHAFSKGITFFDTADVYGQNANEVLLGKA--LKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASL 118 (344)
Q Consensus 41 ~~~~~~l~~A~~~Gin~~Dta~~Yg~g~sE~~lg~~--l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL 118 (344)
+...+.+++-...|-.|+|....-|...++..+.-+ +++...=+...--- ..+.+...+...+.+.
T Consensus 15 ~nL~~~~~rl~~~~P~FisVT~gAgGst~~~Tl~la~~lq~~~Gie~i~HLT-----------Crd~n~~~L~~~L~~a- 82 (565)
T PLN02540 15 DNLFERMDRMVAHGPLFCDITWGAGGSTADLTLDIANRMQNMICVETMMHLT-----------CTNMPVEKIDHALETI- 82 (565)
T ss_pred HHHHHHHHHHhccCCCEEEeCCCCCCCcHHHHHHHHHHHHHhcCCCeeEEee-----------ecCCCHHHHHHHHHHH-
Confidence 344555666667899999987544443455555433 22211112111111 1245677787777755
Q ss_pred hhcCCCceeEEEecCCCCC---------CCHHHHHHHHHHHHHc-CcccEEecCCCCH------------------HHHH
Q 019203 119 KRLDVDYIDLYYQHRVDTS---------VPIEETIGEMKKLVEE-GKIKYIGLSEASP------------------GTIR 170 (344)
Q Consensus 119 ~~Lg~d~iDl~~lh~~~~~---------~~~~e~~~~L~~l~~~-G~ir~iGvs~~~~------------------~~l~ 170 (344)
+.+|+. .++.|....+. ..+..+.+.++.+++. |..-.|||+.++. ..+.
T Consensus 83 ~~~GIr--NILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~~~gd~f~IgVAGYPEgHpe~~~~~~~~~~~~~~~dl~ 160 (565)
T PLN02540 83 KSNGIQ--NILALRGDPPHGQDKFVQVEGGFACALDLVKHIRSKYGDYFGITVAGYPEAHPDVIGGDGLATPEAYQKDLA 160 (565)
T ss_pred HHCCCC--EEEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHHhCCCCceEEEeCCCCCCCcccccccccCCCChHHHHH
Confidence 889976 45555543221 1223355555555554 4567888875421 2344
Q ss_pred HHhhc----CCcceeeccccccccchHhhHHHHHHHhCCc
Q 019203 171 RAHAV----HPITAVQMEWSLWTRDIEEEIIPLCRELGIG 206 (344)
Q Consensus 171 ~~~~~----~~~~~~q~~~n~l~~~~~~~l~~~~~~~gi~ 206 (344)
.+.+. ..+-+-|+-|+. +.-...++.|++.||.
T Consensus 161 ~Lk~KvdAGAdFiITQlfFD~---d~f~~f~~~~r~~Gi~ 197 (565)
T PLN02540 161 YLKEKVDAGADLIITQLFYDT---DIFLKFVNDCRQIGIT 197 (565)
T ss_pred HHHHHHHcCCCEEeeccccCH---HHHHHHHHHHHhcCCC
Confidence 33333 345556776665 2235788899999843
No 181
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=32.76 E-value=1.4e+02 Score=29.56 Aligned_cols=117 Identities=21% Similarity=0.250 Sum_probs=77.2
Q ss_pred HHHHHHHHcCCCccc--ccccc---C-----CCcHHHHHHHHHhc---CCCCCeEEEeccCcCCCCCC---------ccc
Q 019203 45 TMIKHAFSKGITFFD--TADVY---G-----QNANEVLLGKALKQ---LPREKIQVATKFGIAGIGVA---------GVI 102 (344)
Q Consensus 45 ~~l~~A~~~Gin~~D--ta~~Y---g-----~g~sE~~lg~~l~~---~~r~~~~i~tK~~~~~~~~~---------~~~ 102 (344)
+-++..-+.|+..+= ||-+| | .|--|.++.-+-+. ..+..+|+++-+|-.....+ ...
T Consensus 107 e~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~f~~~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~ 186 (545)
T TIGR01228 107 EHFHELEAKGLMMYGQMTAGSWIYIGTQGILQGTYETFAELARQHFGGSLKGKWVLTAGLGGMGGAQPLAVTMNGGVSIA 186 (545)
T ss_pred HHHHHHHHcccccccCccccceEEEcCcceeecHHHHHHHHHHHhcCCCCceeEEEEeCCCccccccHHHHHHcCceEEE
Confidence 455666677887664 55544 1 14455555444332 24677888888875543211 011
Q ss_pred cCCChHHHHHHHHHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhc
Q 019203 103 VKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV 175 (344)
Q Consensus 103 ~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 175 (344)
...++. +.-+|+.+.|+|.+ ..+++|+++..++.+++|+..+||+-.--.+.++++.+.
T Consensus 187 vEvd~~-------ri~kR~~~gyld~~-------~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r 245 (545)
T TIGR01228 187 VEVDES-------RIDKRLETKYCDEQ-------TDSLDEALARAEEAKAEGKPISIGLLGNAAEVLPELLKR 245 (545)
T ss_pred EEECHH-------HHHHHHhcCcceeE-------cCCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHHHc
Confidence 223343 44567778898865 357899999999999999999999988777888887775
No 182
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=32.71 E-value=2.2e+02 Score=27.01 Aligned_cols=90 Identities=10% Similarity=0.185 Sum_probs=56.0
Q ss_pred EEEecCCCCC-----------CCHHHHHHHHHHHHH-cCc---ccEEecCC--CCHHHHHHH---hhcCCcceeeccccc
Q 019203 128 LYYQHRVDTS-----------VPIEETIGEMKKLVE-EGK---IKYIGLSE--ASPGTIRRA---HAVHPITAVQMEWSL 187 (344)
Q Consensus 128 l~~lh~~~~~-----------~~~~e~~~~L~~l~~-~G~---ir~iGvs~--~~~~~l~~~---~~~~~~~~~q~~~n~ 187 (344)
.+-||.+++. -+++++++++.++.+ .|+ |+++=+.+ .+.+++.++ +...++.++-++||.
T Consensus 218 aiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPynp 297 (355)
T TIGR00048 218 AISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNLIPWNP 297 (355)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEEEeccc
Confidence 4779999743 136788888877654 442 44554433 344555544 444556777889998
Q ss_pred cccc----hH----hhHHHHHHHhCCceeecccCcccc
Q 019203 188 WTRD----IE----EEIIPLCRELGIGIVPYSPLGRGF 217 (344)
Q Consensus 188 l~~~----~~----~~l~~~~~~~gi~v~a~spl~~G~ 217 (344)
+... +. ..+.++.+++|+.+......+.-+
T Consensus 298 ~~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~~~G~di 335 (355)
T TIGR00048 298 FPEADYERPSNEQIDRFAKTLMSYGFTVTIRKSRGDDI 335 (355)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCcch
Confidence 6431 11 345666778899999887776443
No 183
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=32.69 E-value=76 Score=28.45 Aligned_cols=98 Identities=17% Similarity=0.139 Sum_probs=55.5
Q ss_pred HHHHHHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcc-cEEecC-------CCCHHHHHHHhhcCCcceee
Q 019203 111 RSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKI-KYIGLS-------EASPGTIRRAHAVHPITAVQ 182 (344)
Q Consensus 111 ~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~i-r~iGvs-------~~~~~~l~~~~~~~~~~~~q 182 (344)
-..++..|+-.| +|||++=+-|-......+++++..-++.++--| -+.|=. .-..+++.+.+....|+.+.
T Consensus 24 ~~~~~dlLe~ag-~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGtl~E~a~~q~~~~~yl~~~k~lGf~~IE 102 (244)
T PF02679_consen 24 LRYLEDLLESAG-DYIDFLKFGWGTSALYPEEILKEKIDLAHSHGVYVYPGGTLFEVAYQQGKFDEYLEECKELGFDAIE 102 (244)
T ss_dssp HHHHHHHHHHHG-GG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHHHHHHHHTT-HHHHHHHHHHCT-SEEE
T ss_pred HHHHHHHHHHhh-hhccEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHHHHHHHhcChHHHHHHHHHHcCCCEEE
Confidence 355677888888 899999999987766556666555555543333 233321 11233444445557788887
Q ss_pred ccccccccchH--hhHHHHHHHhCCceee
Q 019203 183 MEWSLWTRDIE--EEIIPLCRELGIGIVP 209 (344)
Q Consensus 183 ~~~n~l~~~~~--~~l~~~~~~~gi~v~a 209 (344)
+.-.-+.-..+ ..+++.++++|..|++
T Consensus 103 iSdGti~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 103 ISDGTIDLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp E--SSS---HHHHHHHHHHHCCTTSEEEE
T ss_pred ecCCceeCCHHHHHHHHHHHHHCCCEEee
Confidence 76554443322 5788888888887765
No 184
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=32.59 E-value=4.4e+02 Score=25.01 Aligned_cols=25 Identities=8% Similarity=0.206 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHHHHcCCCcccccc
Q 019203 38 VSEEDGITMIKHAFSKGITFFDTAD 62 (344)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~Dta~ 62 (344)
.+.++..++++..-+.||..++...
T Consensus 19 ~s~~~k~~ia~~L~~~Gv~~IEvG~ 43 (363)
T TIGR02090 19 LTVEQKVEIARKLDELGVDVIEAGF 43 (363)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 3678889999999999999999753
No 185
>PRK03892 ribonuclease P protein component 3; Provisional
Probab=32.22 E-value=3.5e+02 Score=23.70 Aligned_cols=169 Identities=11% Similarity=0.031 Sum_probs=102.3
Q ss_pred CCCeEEEeccCcCCCCCCccccCCChHHHHHHHHHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEEec
Q 019203 82 REKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGL 161 (344)
Q Consensus 82 r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~iGv 161 (344)
-++++++-|+..... ......++.+++.-+..|.+ -+.|-..++. ++ ..++++=+.--|.|
T Consensus 27 ~~~~~~~~~~~~~~~--------~~~~~~~~d~~~l~~~yg~~---gv~i~~~np~----~l----~~~V~k~~~~vv~V 87 (216)
T PRK03892 27 FDEVVFTKKLVLEDS--------PDFGSLKEELKELKKEYGKV---AILLVTPKPS----LI----REVKQRFLNYLIYV 87 (216)
T ss_pred hhheEEEEEEeccCC--------CChhhhHHHHHHHHHhcCcc---eEEEecCCHH----HH----HHHHHhccceEEEE
Confidence 477888888754432 22344677778888888855 5555554333 22 22222224566677
Q ss_pred CCCCHHHHHHHhhcCCcceeecccc-ccccchHhhHHHHHHHhCCcee-ecccCcccccCCCCCCCCCCCCcccccccCC
Q 019203 162 SEASPGTIRRAHAVHPITAVQMEWS-LWTRDIEEEIIPLCRELGIGIV-PYSPLGRGFFGGKAVVENVPADSFLHFLPRF 239 (344)
Q Consensus 162 s~~~~~~l~~~~~~~~~~~~q~~~n-~l~~~~~~~l~~~~~~~gi~v~-a~spl~~G~L~g~~~~~~~~~~~~~~~~~~~ 239 (344)
-.=+...-+.+++. .++++-.++- --+...+.-+...+.++||++- ..+|+-...
T Consensus 88 ~GGd~~vNR~AvE~-~VDVL~~P~~~Rkd~g~dHVLAKlAa~n~VAIe~~L~plL~~~---------------------- 144 (216)
T PRK03892 88 QGGDLRVNRYAIER-GVDAIISPWVGRKDPGIDHVLARMAAKRGVAIGFSLSPLLRAN---------------------- 144 (216)
T ss_pred ECCcHHHHHHHHhc-ccceeecccccCcCCCccHHHHHHHHHcCeEEEEecHHHHhhC----------------------
Confidence 55455555566665 6777655432 2222233457888999999973 566664211
Q ss_pred cCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHhccCCC
Q 019203 240 KGENLDRNKSIYFRIGNLAKKYNCTSAQLALAWVLGQGDDVVPIPGTTKMKNLDDNIDSLRIK 302 (344)
Q Consensus 240 ~~~~~~~~~~~~~~l~~ia~~~~~s~aqlal~~~l~~~~v~~vi~G~~~~~~l~enl~a~~~~ 302 (344)
+..-...+..+..+.+++++|+.+ ++++.+. ..+.+.+++.++......++..
T Consensus 145 -G~~Rar~L~~~r~~l~L~rKYd~P-------~VISS~A--~s~~~lRsPRdl~aL~~~iGme 197 (216)
T PRK03892 145 -PYERANILRFMMKAWQLVNKYKVP-------RFITSSA--ESKWEVRGPRDLMSLGINIGME 197 (216)
T ss_pred -chhHHHHHHHHHHHHHHHHHcCCC-------EEEecCc--chhccCCCHHHHHHHHHHhCCC
Confidence 111234566777888899999875 3344443 4577888888888888877754
No 186
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=32.07 E-value=4.4e+02 Score=24.82 Aligned_cols=118 Identities=19% Similarity=0.222 Sum_probs=72.3
Q ss_pred CCHHHHHHHHHHHHHcCCCccccccccCC----------------Cc--HHHHHHHHHhcCCCCCeEEEeccCcCCCCCC
Q 019203 38 VSEEDGITMIKHAFSKGITFFDTADVYGQ----------------NA--NEVLLGKALKQLPREKIQVATKFGIAGIGVA 99 (344)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~----------------g~--sE~~lg~~l~~~~r~~~~i~tK~~~~~~~~~ 99 (344)
++.+.-.++.+.|=+.|+-++=|--.+.. |. ...++....+ ....+.++|=.
T Consensus 87 ~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~--~~kPiIlSTGm-------- 156 (347)
T COG2089 87 TPLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAK--KGKPIILSTGM-------- 156 (347)
T ss_pred CCHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHh--cCCCEEEEccc--------
Confidence 46677788899999999988766432221 11 2233333333 23456666654
Q ss_pred ccccCCChHHHHHHHHHHHhhcCCCceeEEEecCCCCC-CCHHHH-HHHHHHHHHcCcccEEecCCCCHHHHHHHhh
Q 019203 100 GVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS-VPIEET-IGEMKKLVEEGKIKYIGLSEASPGTIRRAHA 174 (344)
Q Consensus 100 ~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~-~~~~e~-~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~ 174 (344)
-+-+.|.++++. +++-|.. |+.+||+.... .+.+++ +..+..|.+.= ---||+|+|+..-+.-+..
T Consensus 157 -----a~~~ei~~av~~-~r~~g~~--~i~LLhC~s~YPap~ed~NL~~i~~l~~~F-n~~vGlSDHT~g~~a~l~A 224 (347)
T COG2089 157 -----ATIEEIEEAVAI-LRENGNP--DIALLHCTSAYPAPFEDVNLKAIPKLAEAF-NAIVGLSDHTLGILAPLAA 224 (347)
T ss_pred -----ccHHHHHHHHHH-HHhcCCC--CeEEEEecCCCCCCHHHhhHHHHHHHHHHh-CCccccccCccchhHHHHH
Confidence 356668888874 4444533 99999998654 345543 45555555543 5579999998875544433
No 187
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=31.37 E-value=2e+02 Score=27.84 Aligned_cols=120 Identities=14% Similarity=0.158 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhc---CCcceeeccccccccchHhhHHHHHHHhC--CceeecccCccc
Q 019203 142 ETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV---HPITAVQMEWSLWTRDIEEEIIPLCRELG--IGIVPYSPLGRG 216 (344)
Q Consensus 142 e~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~---~~~~~~q~~~n~l~~~~~~~l~~~~~~~g--i~v~a~spl~~G 216 (344)
.+++++.+..++++ ++.+++.+.+-..++. ..++++-++..+. .+.++..++.+ ++++.+ +|
T Consensus 122 PiYqa~~~~~~k~~----~~~~mt~d~~~~~ie~qa~~GVDfmTiHcGi~-----~~~~~~~~~~~R~~giVSR----GG 188 (431)
T PRK13352 122 PIYQAAVEAARKYG----SVVDMTEDDLFDVIEKQAKDGVDFMTIHCGVT-----RETLERLKKSGRIMGIVSR----GG 188 (431)
T ss_pred hHHHHHHHHHhcCC----ChhhCCHHHHHHHHHHHHHhCCCEEEEccchh-----HHHHHHHHhcCCccCeecC----CH
Confidence 34667777765555 7778888887776665 5677776766652 45677777543 555543 23
Q ss_pred ccCCCCCCCCCCCCcccccccCCcCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHH
Q 019203 217 FFGGKAVVENVPADSFLHFLPRFKGENLDRNKSIYFRIGNLAKKYNCTSAQLALAWVLGQGDDVVPIPGTTKMKNLDDNI 296 (344)
Q Consensus 217 ~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~aqlal~~~l~~~~v~~vi~G~~~~~~l~enl 296 (344)
-+.-.+...+ ..=.+..+.++.|.+|+++|.++++ |.-+.-...|.-++...|+.|.+
T Consensus 189 s~~~~WM~~n---------------~~ENPlye~fD~lLeI~~~yDVtlS-------LGDglRPG~i~Da~D~aQi~El~ 246 (431)
T PRK13352 189 SFLAAWMLHN---------------NKENPLYEHFDYLLEILKEYDVTLS-------LGDGLRPGCIADATDRAQIQELI 246 (431)
T ss_pred HHHHHHHHHc---------------CCcCchHHHHHHHHHHHHHhCeeee-------ccCCcCCCccccCCcHHHHHHHH
Confidence 2221100000 0012245667899999999987532 22222223356667777777754
No 188
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=31.05 E-value=5.3e+02 Score=25.42 Aligned_cols=116 Identities=10% Similarity=0.045 Sum_probs=0.0
Q ss_pred EEEeccCcCCCCCCccccCCChHHHHHHHHHHHhhcCCCceeEE---------EecCCCCCCCHHHHHHHHHHHHHc-Cc
Q 019203 86 QVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLY---------YQHRVDTSVPIEETIGEMKKLVEE-GK 155 (344)
Q Consensus 86 ~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~---------~lh~~~~~~~~~e~~~~L~~l~~~-G~ 155 (344)
+..+-+....+........++.+....-++. |.++|++.|.+. -..+++ -|+.++.+++. ..
T Consensus 4 V~I~DtTlRDG~Qs~~~~~~~t~dkl~ia~~-Ld~~Gv~~IE~~ggatf~~~~~f~~e~-------p~e~l~~l~~~~~~ 75 (448)
T PRK12331 4 IKITETVLRDGQQSLIATRMTTEEMLPILEK-LDNAGYHSLEMWGGATFDACLRFLNED-------PWERLRKIRKAVKK 75 (448)
T ss_pred cEEEECCCCccccCcCCcccCHHHHHHHHHH-HHHcCCCEEEecCCccchhhhccCCCC-------HHHHHHHHHHhCCC
Q ss_pred ccE---------EecCCCCHHHHHHHhhc---CCcceeeccccccccchHhhHHHHHHHhCCceee
Q 019203 156 IKY---------IGLSEASPGTIRRAHAV---HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVP 209 (344)
Q Consensus 156 ir~---------iGvs~~~~~~l~~~~~~---~~~~~~q~~~n~l~~~~~~~l~~~~~~~gi~v~a 209 (344)
++. +|.++++.+.+++.++. ..++++.+-..+-+.+.-...++++++.|+.+.+
T Consensus 76 ~~l~~l~r~~N~~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~ 141 (448)
T PRK12331 76 TKLQMLLRGQNLLGYRNYADDVVESFVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQV 141 (448)
T ss_pred CEEEEEeccccccccccCchhhHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEE
No 189
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=30.66 E-value=4.7e+02 Score=24.69 Aligned_cols=72 Identities=14% Similarity=0.034 Sum_probs=47.8
Q ss_pred ccCCChHHHHHHHHHHHhhcCCCcee-EEEecCCCCCCCHHHHHHHHHHHHH-cCc---ccEEecCC--CCHHHHHHHhh
Q 019203 102 IVKGAPDYVRSCCEASLKRLDVDYID-LYYQHRVDTSVPIEETIGEMKKLVE-EGK---IKYIGLSE--ASPGTIRRAHA 174 (344)
Q Consensus 102 ~~~~~~~~i~~~~~~sL~~Lg~d~iD-l~~lh~~~~~~~~~e~~~~L~~l~~-~G~---ir~iGvs~--~~~~~l~~~~~ 174 (344)
....+.+.|..++......++. .++ ++++--=.+....+.+.++++.+++ .|. -|++-||+ +.+ .+.++.+
T Consensus 126 ~rnlt~~EI~~qv~~~~~~~~~-~~~gvV~mggGEPLln~d~v~~~l~~l~~~~gi~~~~r~itvsTsG~~p-~i~~l~~ 203 (342)
T PRK14454 126 VRNLTAGEMLDQILAAQNDIGE-RISNIVLMGSGEPLDNYENVMKFLKIVNSPYGLNIGQRHITLSTCGIVP-KIYELAD 203 (342)
T ss_pred cccCCHHHHHHHHHHHHHHhcC-CCCCEEEECCchhhcCHHHHHHHHHHHhcccccCcCCCceEEECcCChh-HHHHHHh
Confidence 3468999999999988776652 233 3444444455667889999999997 476 35777766 333 3555555
Q ss_pred c
Q 019203 175 V 175 (344)
Q Consensus 175 ~ 175 (344)
.
T Consensus 204 ~ 204 (342)
T PRK14454 204 E 204 (342)
T ss_pred h
Confidence 4
No 190
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=30.62 E-value=2.8e+02 Score=24.64 Aligned_cols=51 Identities=12% Similarity=0.070 Sum_probs=31.8
Q ss_pred CHHHHHHHhhcCCcceeeccccc-------cccchHhhHHHHHHHhCCceeecccCcc
Q 019203 165 SPGTIRRAHAVHPITAVQMEWSL-------WTRDIEEEIIPLCRELGIGIVPYSPLGR 215 (344)
Q Consensus 165 ~~~~l~~~~~~~~~~~~q~~~n~-------l~~~~~~~l~~~~~~~gi~v~a~spl~~ 215 (344)
+.++..+.++...++.+++..+. +.......+.+.++++||.+.++.|...
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~ 71 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETN 71 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCccc
Confidence 44455555555677777763221 1111125688889999999998887653
No 191
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=30.54 E-value=3.4e+02 Score=24.89 Aligned_cols=43 Identities=19% Similarity=0.233 Sum_probs=33.6
Q ss_pred HHHHHHHHHcCC------CHHHHHHHHHHhCCCCeEEecCCCCHHHHHHH
Q 019203 252 FRIGNLAKKYNC------TSAQLALAWVLGQGDDVVPIPGTTKMKNLDDN 295 (344)
Q Consensus 252 ~~l~~ia~~~~~------s~aqlal~~~l~~~~v~~vi~G~~~~~~l~en 295 (344)
..|.++|++++. ++.++-..|.-.... ..+..|+|+|+.+-+.
T Consensus 224 ~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~~-VGiTAGASTP~~li~e 272 (280)
T TIGR00216 224 TRLYEIAEEHGPPSYLIETAEELPEEWLKGVKV-VGITAGASTPDWIIEE 272 (280)
T ss_pred HHHHHHHHHhCCCEEEECChHHCCHHHhCCCCE-EEEEecCCCCHHHHHH
Confidence 578888888874 688998999877654 5778999999976553
No 192
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=30.43 E-value=4e+02 Score=24.66 Aligned_cols=43 Identities=16% Similarity=0.268 Sum_probs=33.0
Q ss_pred HHHHHHHHHcCC------CHHHHHHHHHHhCCCCeEEecCCCCHHHHHHH
Q 019203 252 FRIGNLAKKYNC------TSAQLALAWVLGQGDDVVPIPGTTKMKNLDDN 295 (344)
Q Consensus 252 ~~l~~ia~~~~~------s~aqlal~~~l~~~~v~~vi~G~~~~~~l~en 295 (344)
..|.++|++.+. ++.++-..|+.... ...+..|+|+|+.+-+.
T Consensus 226 ~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~-~VGitaGASTP~~li~e 274 (298)
T PRK01045 226 NRLREVAEEAGAPAYLIDDASEIDPEWFKGVK-TVGVTAGASAPEWLVQE 274 (298)
T ss_pred HHHHHHHHHHCCCEEEECChHHCcHHHhcCCC-EEEEEecCCCCHHHHHH
Confidence 467888888764 68899999997654 45778999999976543
No 193
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=30.21 E-value=4e+02 Score=23.77 Aligned_cols=97 Identities=18% Similarity=0.170 Sum_probs=59.3
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcC-cccEEecCCCCHHHHHHHhhcCCcceee
Q 019203 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG-KIKYIGLSEASPGTIRRAHAVHPITAVQ 182 (344)
Q Consensus 104 ~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G-~ir~iGvs~~~~~~l~~~~~~~~~~~~q 182 (344)
.++.+...+-+ +.|.++|+++|++-+ |... +.-++.++.+.+.+ .++..+......+.++.+.+. .++.+.
T Consensus 16 ~~~~~~k~~i~-~~L~~~Gv~~iE~g~---p~~~---~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~-g~~~i~ 87 (259)
T cd07939 16 AFSREEKLAIA-RALDEAGVDEIEVGI---PAMG---EEEREAIRAIVALGLPARLIVWCRAVKEDIEAALRC-GVTAVH 87 (259)
T ss_pred CCCHHHHHHHH-HHHHHcCCCEEEEec---CCCC---HHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhC-CcCEEE
Confidence 46666555544 469999999999963 3211 23356666676643 477777776778888777664 334444
Q ss_pred cccccccc--------c-h-----HhhHHHHHHHhCCcee
Q 019203 183 MEWSLWTR--------D-I-----EEEIIPLCRELGIGIV 208 (344)
Q Consensus 183 ~~~n~l~~--------~-~-----~~~l~~~~~~~gi~v~ 208 (344)
+.++.-+. . . -.+.+++|+++|+.|.
T Consensus 88 i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~ 127 (259)
T cd07939 88 ISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVS 127 (259)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 43222111 0 1 1468889999998765
No 194
>PRK06361 hypothetical protein; Provisional
Probab=30.14 E-value=3.5e+02 Score=23.12 Aligned_cols=186 Identities=15% Similarity=0.084 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHcCCCccccccccCCCcHHHHHHHH---HhcC-CCCCeEEEeccCcCCCCCCccccCCChHHHHHHHHHH
Q 019203 42 DGITMIKHAFSKGITFFDTADVYGQNANEVLLGKA---LKQL-PREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEAS 117 (344)
Q Consensus 42 ~~~~~l~~A~~~Gin~~Dta~~Yg~g~sE~~lg~~---l~~~-~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 117 (344)
...++++.|.+.|+..+=.++|.....-...+-.. .++. ...++.| ..|.... ....+.+ ..+...
T Consensus 11 ~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~~~~~~~~~i~v--~~GiE~~-------~~~~~~~-~~~~~~ 80 (212)
T PRK06361 11 IPSELVRRARVLGYRAIAITDHADASNLEEILEKLVRAAEELELYWDIEV--IPGVELT-------HVPPKLI-PKLAKK 80 (212)
T ss_pred CHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHHhhcCCCEE--EEEEEEc-------ccCchhh-chHHHH
Confidence 35789999999999988888776431111111111 1111 1113322 2222110 0112222 333455
Q ss_pred HhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEEecCCC-CHHHHHHHhhcCCcceeeccccccccchHhhH
Q 019203 118 LKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA-SPGTIRRAHAVHPITAVQMEWSLWTRDIEEEI 196 (344)
Q Consensus 118 L~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q~~~n~l~~~~~~~l 196 (344)
+.+++ .|+..+|......+.. ...-..+.+.|.+.-+|=-.. ..+.+ +++....+ .+.+......+.....+
T Consensus 81 ~~~~~---~~~~svH~~~~~~~~~--~~~~~~a~~~~~~dvlaHpd~~~~~~~-~~~~~~~~-~lEin~~~~~~~~~~~~ 153 (212)
T PRK06361 81 ARDLG---AEIVVVHGETIVEPVE--EGTNLAAIECEDVDILAHPGLITEEEA-ELAAENGV-FLEITARKGHSLTNGHV 153 (212)
T ss_pred HHHCC---CEEEEECCCCcchhhh--hhhHHHHHhCCCCcEecCcchhhHHHH-HHHHHcCe-EEEEECCCCcccchHHH
Confidence 66665 4666899543322111 111145677887765554332 22333 33333331 12221111122233579
Q ss_pred HHHHHHhCCceeecccCcccccCCCCCCCCCCCCcccccccCCcCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 019203 197 IPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSFLHFLPRFKGENLDRNKSIYFRIGNLAKKYNCTSAQLALAWV 273 (344)
Q Consensus 197 ~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~aqlal~~~ 273 (344)
++++++.|+.++.-|.... .+. ....+.+..++++.|++..++--.+.
T Consensus 154 l~~a~~~gi~vv~~SDaH~----------------------------~~d-~~~~~~~~~i~~~~gl~~~~v~~~~~ 201 (212)
T PRK06361 154 ARIAREAGAPLVINTDTHA----------------------------PSD-LITYEFARKVALGAGLTEKELEEALE 201 (212)
T ss_pred HHHHHHhCCcEEEECCCCC----------------------------HHH-HHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 9999999999877554431 011 22467888899999998888765444
No 195
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=30.12 E-value=3.5e+02 Score=23.10 Aligned_cols=98 Identities=17% Similarity=0.208 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhhcCCCc--eeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEEecCCCCH--HHHHHHhhcCCcceeecc
Q 019203 109 YVRSCCEASLKRLDVDY--IDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASP--GTIRRAHAVHPITAVQME 184 (344)
Q Consensus 109 ~i~~~~~~sL~~Lg~d~--iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~iGvs~~~~--~~l~~~~~~~~~~~~q~~ 184 (344)
.....+.+.|+..+..- +=+- +.............+.+..|++.|- .+.+.++.. ..+.. +...+++.+=+.
T Consensus 100 ~~~~~l~~~l~~~~~~~~~lvle-i~e~~~~~~~~~~~~~i~~l~~~G~--~ialddfg~~~~~~~~-l~~l~~d~iKld 175 (241)
T smart00052 100 DLVPRVLELLEETGLPPQRLELE-ITESVLLDDDESAVATLQRLRELGV--RIALDDFGTGYSSLSY-LKRLPVDLLKID 175 (241)
T ss_pred hHHHHHHHHHHHcCCCHHHEEEE-EeChhhhcChHHHHHHHHHHHHCCC--EEEEeCCCCcHHHHHH-HHhCCCCeEEEC
Confidence 34566677777776542 2222 2221122234455689999999997 567766643 23333 333456666555
Q ss_pred cccccc--------chHhhHHHHHHHhCCceeec
Q 019203 185 WSLWTR--------DIEEEIIPLCRELGIGIVPY 210 (344)
Q Consensus 185 ~n~l~~--------~~~~~l~~~~~~~gi~v~a~ 210 (344)
.+.... ..-..++..|+..|+.|++-
T Consensus 176 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~ 209 (241)
T smart00052 176 KSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAE 209 (241)
T ss_pred HHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEe
Confidence 443321 11267889999999999884
No 196
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=30.11 E-value=4.7e+02 Score=24.55 Aligned_cols=49 Identities=14% Similarity=0.155 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHHHcCCCccccc---------cccCCC--cHHHHHHHHHhcCCCCCeE
Q 019203 38 VSEEDGITMIKHAFSKGITFFDTA---------DVYGQN--ANEVLLGKALKQLPREKIQ 86 (344)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~Dta---------~~Yg~g--~sE~~lg~~l~~~~r~~~~ 86 (344)
.+.++..+++...-+.||..++.+ -.||.. ..++.+.+..+..++..+.
T Consensus 21 f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~ 80 (333)
T TIGR03217 21 FTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVA 80 (333)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEE
Confidence 477888999999999999999984 222221 2455565555544444443
No 197
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=29.77 E-value=71 Score=20.45 Aligned_cols=42 Identities=12% Similarity=0.180 Sum_probs=30.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHhccCC
Q 019203 254 IGNLAKKYNCTSAQLALAWVLGQGDDVVPIPGTTKMKNLDDNIDSLRI 301 (344)
Q Consensus 254 l~~ia~~~~~s~aqlal~~~l~~~~v~~vi~G~~~~~~l~enl~a~~~ 301 (344)
+++||+..|+|++.+. .+|+.+. -++..+.+++.+.++.+++
T Consensus 2 i~dIA~~agvS~~TVS--r~ln~~~----~vs~~tr~rI~~~a~~lgY 43 (46)
T PF00356_consen 2 IKDIAREAGVSKSTVS--RVLNGPP----RVSEETRERILEAAEELGY 43 (46)
T ss_dssp HHHHHHHHTSSHHHHH--HHHTTCS----SSTHHHHHHHHHHHHHHTB
T ss_pred HHHHHHHHCcCHHHHH--HHHhCCC----CCCHHHHHHHHHHHHHHCC
Confidence 6789999999998765 4566542 4666777888888777665
No 198
>PF04068 RLI: Possible Fer4-like domain in RNase L inhibitor, RLI; InterPro: IPR007209 This is a possible metal-binding domain in endoribonuclease RNase L inhibitor. It is found at the N-terminal end of RNase L inhibitor proteins, adjacent to the 4Fe-4S binding domain, fer4, IPR001450 from INTERPRO. Also often found adjacent to IPR007177 from INTERPRO in uncharacterised proteins. The RNase L system plays a major role in the anti-viral and anti-proliferative activities of interferons [], and could possibly play a more general role in the regulation of RNA stability in mammalian cells. Inhibitory activity requires concentration-dependent association of RLI with RNase L [].; PDB: 3J16_B 3BK7_A.
Probab=29.70 E-value=26 Score=21.15 Aligned_cols=13 Identities=46% Similarity=1.155 Sum_probs=8.3
Q ss_pred hhhhccCCCCCCC
Q 019203 332 ASWKFANTPPKDC 344 (344)
Q Consensus 332 ~~~~~~~~~~~~~ 344 (344)
+-|++++|.||-|
T Consensus 4 av~d~~~CdPkKC 16 (35)
T PF04068_consen 4 AVWDFDQCDPKKC 16 (35)
T ss_dssp EEE-CCC--CCCC
T ss_pred EEEEcCCCCcccc
Confidence 4588999999988
No 199
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=29.69 E-value=4.9e+02 Score=24.69 Aligned_cols=147 Identities=13% Similarity=0.065 Sum_probs=73.0
Q ss_pred CCCHHHHHHHHH-------HHHHcCCCcccc--c-----------------cccCCCcHH---HHHHHHHhc----CCCC
Q 019203 37 PVSEEDGITMIK-------HAFSKGITFFDT--A-----------------DVYGQNANE---VLLGKALKQ----LPRE 83 (344)
Q Consensus 37 ~~~~~~~~~~l~-------~A~~~Gin~~Dt--a-----------------~~Yg~g~sE---~~lg~~l~~----~~r~ 83 (344)
..+.++..++++ .|.++|+..++- | +.|| |.-| +++-+.++. .. .
T Consensus 148 ~mt~~eI~~ii~~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYG-GslENR~Rf~~Eiv~aVr~~vg-~ 225 (362)
T PRK10605 148 ALELEEIPGIVNDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYG-GSVENRARLVLEVVDAGIAEWG-A 225 (362)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCC-CcHHHHHHHHHHHHHHHHHHcC-C
Confidence 356666666655 445678887764 2 2355 3233 223333332 22 2
Q ss_pred CeEEEeccCcCCCCCCccccCCChHHHHHHHHHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEEecCC
Q 019203 84 KIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE 163 (344)
Q Consensus 84 ~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~iGvs~ 163 (344)
+ +|..|+......+ ......+.+.....+=+-|+..|+|+|++-.-+......... ...+.+++.=.+--+++..
T Consensus 226 ~-~igvRis~~~~~~-~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~~~~~~---~~~~~ik~~~~~pv~~~G~ 300 (362)
T PRK10605 226 D-RIGIRISPLGTFN-NVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAGGEPYSD---AFREKVRARFHGVIIGAGA 300 (362)
T ss_pred C-eEEEEECCccccc-cCCCCCCHHHHHHHHHHHHHHcCCCEEEeccccccCCccccH---HHHHHHHHHCCCCEEEeCC
Confidence 3 4888886542100 001124555432344455677788888875422211111111 1223333322334455555
Q ss_pred CCHHHHHHHhhcCCcceeec-ccccccc
Q 019203 164 ASPGTIRRAHAVHPITAVQM-EWSLWTR 190 (344)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~q~-~~n~l~~ 190 (344)
++++.++++++....+.+-+ +--+.++
T Consensus 301 ~~~~~ae~~i~~G~~D~V~~gR~~iadP 328 (362)
T PRK10605 301 YTAEKAETLIGKGLIDAVAFGRDYIANP 328 (362)
T ss_pred CCHHHHHHHHHcCCCCEEEECHHhhhCc
Confidence 68888888888877776644 3344443
No 200
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=29.52 E-value=4.8e+02 Score=25.40 Aligned_cols=144 Identities=15% Similarity=0.150 Sum_probs=83.9
Q ss_pred CHHHHHHHHHHHHHcCCCcc-ccccccCCCcHHHHHHHHHhcCCCCCeEEEeccCcCCC-----CCCccccCCChHHHHH
Q 019203 39 SEEDGITMIKHAFSKGITFF-DTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGI-----GVAGVIVKGAPDYVRS 112 (344)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~-Dta~~Yg~g~sE~~lg~~l~~~~r~~~~i~tK~~~~~~-----~~~~~~~~~~~~~i~~ 112 (344)
+.+.-.+-++.|++.|-..+ |-+ ..|+ -..+-.+.|+. ..+-|-| +..+.. ...+...+.+.+.+..
T Consensus 75 d~~~E~~K~~~A~~~GADtiMDLS-tggd--l~~iR~~il~~---s~vpvGT-VPiYqa~~~~~~k~~~~~~mt~d~~~~ 147 (431)
T PRK13352 75 DIEEELEKAKVAVKYGADTIMDLS-TGGD--LDEIRRAIIEA---SPVPVGT-VPIYQAAVEAARKYGSVVDMTEDDLFD 147 (431)
T ss_pred CHHHHHHHHHHHHHcCCCeEeecc-CCCC--HHHHHHHHHHc---CCCCCcC-hhHHHHHHHHHhcCCChhhCCHHHHHH
Confidence 55556677999999997543 433 2332 33333333332 2222221 111000 0001234688888888
Q ss_pred HHHHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhcCCcceeeccccccccch
Q 019203 113 CCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDI 192 (344)
Q Consensus 113 ~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~l~~~~ 192 (344)
.+++..+. =+|.+.||.- -+.+.++.++++|+ ..|+-+-....+...+.... .=|+++...
T Consensus 148 ~ie~qa~~----GVDfmTiHcG-------i~~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~n~------~ENPlye~f 208 (431)
T PRK13352 148 VIEKQAKD----GVDFMTIHCG-------VTRETLERLKKSGR--IMGIVSRGGSFLAAWMLHNN------KENPLYEHF 208 (431)
T ss_pred HHHHHHHh----CCCEEEEccc-------hhHHHHHHHHhcCC--ccCeecCCHHHHHHHHHHcC------CcCchHHHH
Confidence 88877763 4788999983 24567788888884 66776655555555443322 334555543
Q ss_pred HhhHHHHHHHhCCceee
Q 019203 193 EEEIIPLCRELGIGIVP 209 (344)
Q Consensus 193 ~~~l~~~~~~~gi~v~a 209 (344)
..+++.|+++++.+--
T Consensus 209 -D~lLeI~~~yDVtlSL 224 (431)
T PRK13352 209 -DYLLEILKEYDVTLSL 224 (431)
T ss_pred -HHHHHHHHHhCeeeec
Confidence 4799999999998743
No 201
>PF03618 Kinase-PPPase: Kinase/pyrophosphorylase; InterPro: IPR005177 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.; GO: 0005524 ATP binding, 0016772 transferase activity, transferring phosphorus-containing groups
Probab=29.51 E-value=1.1e+02 Score=27.53 Aligned_cols=100 Identities=15% Similarity=0.188 Sum_probs=0.0
Q ss_pred CHHHHHHHhhcCCcceeeccccccccchHhhHHHHHHHhCCceee-cccCcccccCCCCCCCCCCCCcccccccCCcCcc
Q 019203 165 SPGTIRRAHAVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVP-YSPLGRGFFGGKAVVENVPADSFLHFLPRFKGEN 243 (344)
Q Consensus 165 ~~~~l~~~~~~~~~~~~q~~~n~l~~~~~~~l~~~~~~~gi~v~a-~spl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~ 243 (344)
+.+++.++++...-.--.+-|++.+.....-+.++|+++||..+. ++|+- ..|......++....+..+....
T Consensus 38 ~~~~~~~il~~i~~~~~iV~~Tlv~~~lr~~l~~~~~~~~i~~~Dll~~~l-~~l~~~lg~~p~~~pg~~~~ld~----- 111 (255)
T PF03618_consen 38 TEEQLDEILEEIKEENAIVFYTLVDPELREYLEEFCREHGIPCVDLLGPLL-SALEEFLGQKPSRKPGLQHQLDE----- 111 (255)
T ss_pred CHHHHHHHHHHHhccCCEEEEeCCCHHHHHHHHHHHHhcCCCEEeccHHHH-HHHHHHHCcCcccccCccccchH-----
Q ss_pred hhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCC---------CeEEecCCCC
Q 019203 244 LDRNKSIYFRIGNLAKKYNCTSAQLALAWVLGQGD---------DVVPIPGTTK 288 (344)
Q Consensus 244 ~~~~~~~~~~l~~ia~~~~~s~aqlal~~~l~~~~---------v~~vi~G~~~ 288 (344)
+-+++|. |+.|++.+.. ...+|+|.|.
T Consensus 112 --------~Yf~RIe----------Aiefav~~DDG~~~~~l~~ADivLvGVSR 147 (255)
T PF03618_consen 112 --------DYFKRIE----------AIEFAVKHDDGKNPRGLDEADIVLVGVSR 147 (255)
T ss_pred --------HHHHHHH----------HHHHHHHccCCCCccccccCCEEEEcccc
No 202
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=29.32 E-value=3.7e+02 Score=23.97 Aligned_cols=51 Identities=16% Similarity=0.108 Sum_probs=31.0
Q ss_pred hhHHHHHHHhCCceeecccCcccccCCCCCCCCCCCCcccccccCCcCcchhhhHHHHHHHHHHHHHcCC
Q 019203 194 EEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSFLHFLPRFKGENLDRNKSIYFRIGNLAKKYNC 263 (344)
Q Consensus 194 ~~l~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~ 263 (344)
...++.|++.|+.++...... ... . + .....++...+.+..+.++|+++|+
T Consensus 97 ~~~i~~a~~lG~~~v~~~~~~--~~~-~------~----------~~~~~~~~~~~~l~~l~~~a~~~gv 147 (284)
T PRK13210 97 KKAIRLAQDLGIRTIQLAGYD--VYY-E------E----------KSEETRQRFIEGLAWAVEQAAAAQV 147 (284)
T ss_pred HHHHHHHHHhCCCEEEECCcc--ccc-c------c----------ccHHHHHHHHHHHHHHHHHHHHhCC
Confidence 578999999999998752111 000 0 0 0011234555667788888888876
No 203
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=29.27 E-value=3.6e+02 Score=24.83 Aligned_cols=105 Identities=15% Similarity=0.139 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHhhc---CCCceeEE------EecCCCCCCCHHHHHHHHHHHHHcCcccE----EecCCCCHHHHHH
Q 019203 105 GAPDYVRSCCEASLKRL---DVDYIDLY------YQHRVDTSVPIEETIGEMKKLVEEGKIKY----IGLSEASPGTIRR 171 (344)
Q Consensus 105 ~~~~~i~~~~~~sL~~L---g~d~iDl~------~lh~~~~~~~~~e~~~~L~~l~~~G~ir~----iGvs~~~~~~l~~ 171 (344)
.+++.+.......++.+ ||.|+|+. .-+..+....++.+.+++.+.+++--||. .+..+.+.+.+++
T Consensus 66 ~~~ed~~~~~~~~~~e~~~~Gvt~~E~~~~p~~~~~~~~~~~~~~~~~~~ai~~~~~~~gi~~~l~~~~~~~~~~~~~~~ 145 (325)
T cd01320 66 QTEEDFERLAYEYLEDAAADGVVYAEIRFSPQLHTRRGLSFDEVVEAVLRGLDEAEAEFGIKARLILCGLRHLSPESAQE 145 (325)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEEeCchhhccCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEecCCCCHHHHHH
Q ss_pred Hhh---------cCCcceeeccccccccchHhhHHHHHHHhCCceeec
Q 019203 172 AHA---------VHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPY 210 (344)
Q Consensus 172 ~~~---------~~~~~~~q~~~n~l~~~~~~~l~~~~~~~gi~v~a~ 210 (344)
.++ ...++..-.+... .......+++.|+++|+.+..+
T Consensus 146 ~~~~~~~~~~~~vvg~~l~~~~~~~-~~~~~~~~~~~A~~~g~~v~~H 192 (325)
T cd01320 146 TLELALKYRDKGVVGFDLAGDEVGF-PPEKFVRAFQRAREAGLRLTAH 192 (325)
T ss_pred HHHHHHhccCCCEEEeecCCCCCCC-CHHHHHHHHHHHHHCCCceEEe
No 204
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=29.20 E-value=4e+02 Score=26.07 Aligned_cols=16 Identities=6% Similarity=0.061 Sum_probs=9.4
Q ss_pred CceeecccCcccccCC
Q 019203 205 IGIVPYSPLGRGFFGG 220 (344)
Q Consensus 205 i~v~a~spl~~G~L~g 220 (344)
..+++.+|=|.|.+.+
T Consensus 317 ~~~iglG~gA~s~~~~ 332 (453)
T PRK09249 317 CDLIGLGVSAISRIGD 332 (453)
T ss_pred CeEEEECcCcccCCCC
Confidence 4566666666666543
No 205
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=29.16 E-value=5.4e+02 Score=24.94 Aligned_cols=108 Identities=8% Similarity=0.094 Sum_probs=56.5
Q ss_pred cccCCCcHHHHHHHHHhc----CCCCCeEEEeccCcCCCCCCccccCCChHHHHHHHHHHHhhcC-CCceeEEEecCCCC
Q 019203 62 DVYGQNANEVLLGKALKQ----LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLD-VDYIDLYYQHRVDT 136 (344)
Q Consensus 62 ~~Yg~g~sE~~lg~~l~~----~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg-~d~iDl~~lh~~~~ 136 (344)
..|| .|+-|-+++++ .+.+=++|.|-+.+.-- -+.+...+++.-++.. ...+.++.+|.|+-
T Consensus 61 ~VfG---g~~~L~~~i~~~~~~~~p~~I~V~ttc~~eiI----------GdDi~~v~~~~~~~~p~~~~~~vi~v~t~gf 127 (417)
T cd01966 61 TILG---GGENLEEALDTLAERAKPKVIGLLSTGLTETR----------GEDIAGALKQFRAEHPELADVPVVYVSTPDF 127 (417)
T ss_pred EEEC---CHHHHHHHHHHHHHhcCCCEEEEECCCccccc----------ccCHHHHHHHHHhhccccCCCeEEEecCCCC
Confidence 3677 45555555554 34455678888754331 2224333333333311 01367899999876
Q ss_pred CCCH----HHHHHHHH-HH--------HHcCcccEEecCCCCH---HHHHHHhhcCCcceee
Q 019203 137 SVPI----EETIGEMK-KL--------VEEGKIKYIGLSEASP---GTIRRAHAVHPITAVQ 182 (344)
Q Consensus 137 ~~~~----~e~~~~L~-~l--------~~~G~ir~iGvs~~~~---~~l~~~~~~~~~~~~q 182 (344)
.... +.++++|. .+ +.+++|--||-.+.++ +.++++++...+.++.
T Consensus 128 ~g~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~~D~~eik~lL~~~Gl~v~~ 189 (417)
T cd01966 128 EGSLEDGWAAAVEAIIEALVEPGSRTVTDPRQVNLLPGAHLTPGDVEELKDIIEAFGLEPII 189 (417)
T ss_pred CCcHHHHHHHHHHHHHHHhcccccccCCCCCcEEEECCCCCCHHHHHHHHHHHHHcCCceEE
Confidence 5332 23333332 22 2245677887554433 5566666666655544
No 206
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=29.12 E-value=2.9e+02 Score=25.41 Aligned_cols=97 Identities=19% Similarity=0.221 Sum_probs=61.1
Q ss_pred HhhcCCCceeEEEecCCCCCCCHHHH-----HHHHHHHHHcCcccEEecCCCCHH-------HHHHHhhcCCcceeeccc
Q 019203 118 LKRLDVDYIDLYYQHRVDTSVPIEET-----IGEMKKLVEEGKIKYIGLSEASPG-------TIRRAHAVHPITAVQMEW 185 (344)
Q Consensus 118 L~~Lg~d~iDl~~lh~~~~~~~~~e~-----~~~L~~l~~~G~ir~iGvs~~~~~-------~l~~~~~~~~~~~~q~~~ 185 (344)
++-++-.++|+..+..+.......+. -+.+.++..+--=|++|+.+.++. .+++......|+-+++.-
T Consensus 55 ~~~~~~~~i~~~~~~~~~~~~~~~d~~~~~~nd~~a~~~~~~pdrf~~~~~v~p~~~~~a~~E~er~v~~~gf~g~~l~p 134 (293)
T COG2159 55 LAFMDAAGIDLFVLSGMGEVAIIPDLRRALANDDLAALAAEYPDRFVGFARVDPRDPEAAAEELERRVRELGFVGVKLHP 134 (293)
T ss_pred HhhhcccccceEEeeccccccchHHHhhhhhhHHHHHHHhhCCcceeeeeeeCCCchHHHHHHHHHHHHhcCceEEEecc
Confidence 77788888999998851111112222 256778888888899999987654 344555545555555421
Q ss_pred cccc----cchHhhHHHHHHHhCCceeecccCc
Q 019203 186 SLWT----RDIEEEIIPLCRELGIGIVPYSPLG 214 (344)
Q Consensus 186 n~l~----~~~~~~l~~~~~~~gi~v~a~spl~ 214 (344)
-... ......++++|+++|+.|+-+....
T Consensus 135 ~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~ 167 (293)
T COG2159 135 VAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAG 167 (293)
T ss_pred cccCCCCCChHHHHHHHHHHHcCCCEEEEeCCC
Confidence 1111 1112579999999999998865554
No 207
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=28.84 E-value=4.6e+02 Score=24.11 Aligned_cols=104 Identities=13% Similarity=0.076 Sum_probs=55.2
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEEecCCC-CHHHHHHHhhcCCcceeecc
Q 019203 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA-SPGTIRRAHAVHPITAVQME 184 (344)
Q Consensus 106 ~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q~~ 184 (344)
+++.+++.++..++ .+-+.+--+-++......+.+.....++..++.|+--.+=++.. +...+..++.......+---
T Consensus 138 ~~~~~~~~~~~~~~-~~~~~vvg~~l~~~e~~~~~~~~~~~~~~A~~~g~~i~~Ha~E~~~~~~~~~~~~~~g~~ri~Hg 216 (324)
T TIGR01430 138 QPEAAEETLELAKP-YKEQTIVGFGLAGDERGGPPPDFVRAFAIARELGLHLTVHAGELGGPESVREALDDLGATRIGHG 216 (324)
T ss_pred CHHHHHHHHHHHHh-hccCcEEEecCCCCCCCCCHHHHHHHHHHHHHCCCCeEEecCCCCChHHHHHHHHHcCchhcchh
Confidence 45677777776664 33222322234433333345666777778888887655555543 24444444433333322122
Q ss_pred ccccccchHhhHHHHHHHhCCceeecccCc
Q 019203 185 WSLWTRDIEEEIIPLCRELGIGIVPYSPLG 214 (344)
Q Consensus 185 ~n~l~~~~~~~l~~~~~~~gi~v~a~spl~ 214 (344)
+++.. ..+.++..+++||.+.. .|.+
T Consensus 217 ~~l~~---~~~~i~~l~~~gi~v~~-cP~S 242 (324)
T TIGR01430 217 VRALE---DPELLKRLAQENITLEV-CPTS 242 (324)
T ss_pred hhhcc---CHHHHHHHHHcCceEEE-CCcc
Confidence 22211 14588999999988743 4544
No 208
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=28.82 E-value=4.4e+02 Score=23.77 Aligned_cols=116 Identities=15% Similarity=0.139 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHHHHHcCCCccccccccCCCcHHHHHHHHHhcCCC-CCeEEEeccCcCCCCCCccccCCChHHHHHHHHH
Q 019203 38 VSEEDGITMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPR-EKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEA 116 (344)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~sE~~lg~~l~~~~r-~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (344)
.+.++..++++...+.||..++... ...+..+.-.-+.+....+ ..++... ....+.+ +.
T Consensus 19 ~s~~~k~~i~~~L~~~Gv~~IEvG~-P~~~~~~~~~~~~l~~~~~~~~v~~~~--------------r~~~~di----~~ 79 (262)
T cd07948 19 FDTEDKIEIAKALDAFGVDYIELTS-PAASPQSRADCEAIAKLGLKAKILTHI--------------RCHMDDA----RI 79 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEC-CCCCHHHHHHHHHHHhCCCCCcEEEEe--------------cCCHHHH----HH
Confidence 3678889999999999999999863 2222123222333332222 2221111 1234444 44
Q ss_pred HHhhcCCCceeEEEecCCC-----CCCCHH----HHHHHHHHHHHcCcccEEecCC---CCHHHHHHHh
Q 019203 117 SLKRLDVDYIDLYYQHRVD-----TSVPIE----ETIGEMKKLVEEGKIKYIGLSE---ASPGTIRRAH 173 (344)
Q Consensus 117 sL~~Lg~d~iDl~~lh~~~-----~~~~~~----e~~~~L~~l~~~G~ir~iGvs~---~~~~~l~~~~ 173 (344)
+++ .|++.|.++.--++. .....+ .+.+.++..++.|.--.+++.+ .+++.+.++.
T Consensus 80 a~~-~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~ 147 (262)
T cd07948 80 AVE-TGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVY 147 (262)
T ss_pred HHH-cCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHH
Confidence 443 487777766532210 112233 4455567777788665666532 3445554433
No 209
>PRK09061 D-glutamate deacylase; Validated
Probab=28.76 E-value=3.8e+02 Score=26.80 Aligned_cols=107 Identities=10% Similarity=0.048 Sum_probs=61.1
Q ss_pred HHHHHHHHHHcCCCccccccccCCCcHHHHHHHHHhcCCCCCeEEEeccCcCCCCCCccccCCChHHHHHHHHHHHhhcC
Q 019203 43 GITMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLD 122 (344)
Q Consensus 43 ~~~~l~~A~~~Gin~~Dta~~Yg~g~sE~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg 122 (344)
..++++.|++.|+..|=+...|-.+.+...+-+.++...+.+..|...+...... ......+.+.+.++.+ +..|
T Consensus 171 m~~ll~~al~~Ga~gis~~~~y~p~~~~~eL~~l~~~A~~~g~~v~~H~e~~~~~----~~~~e~~av~~~i~lA-~~~G 245 (509)
T PRK09061 171 ILELLEQGLDEGALGIGIGAGYAPGTGHKEYLELARLAARAGVPTYTHVRYLSNV----DPRSSVDAYQELIAAA-AETG 245 (509)
T ss_pred HHHHHHHHHHCCCCEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEEEecCcccC----CchhHHHHHHHHHHHH-HHhC
Confidence 5778888999999988776667544455556666654445566777765321100 0001122333333322 2344
Q ss_pred CCceeEEEecCCCC-CCCHHHHHHHHHHHHHcCccc
Q 019203 123 VDYIDLYYQHRVDT-SVPIEETIGEMKKLVEEGKIK 157 (344)
Q Consensus 123 ~d~iDl~~lh~~~~-~~~~~e~~~~L~~l~~~G~ir 157 (344)
. -+...|-... .....+.++.+++++++|.--
T Consensus 246 ~---rv~IsHlss~g~~~~~~~le~I~~Ar~~Gi~V 278 (509)
T PRK09061 246 A---HMHICHVNSTSLRDIDRCLALVEKAQAQGLDV 278 (509)
T ss_pred C---CEEEEeeccCCcccHHHHHHHHHHHHHcCCcE
Confidence 3 3555565432 235678889999999988533
No 210
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=28.72 E-value=3.8e+02 Score=23.07 Aligned_cols=134 Identities=13% Similarity=0.041 Sum_probs=74.9
Q ss_pred CHHHHHHHHHHHHHcCCCccccc----------cccCCC--cHHHHHHHHHhcCC-CCCeEEEeccCcCCCCCCccccCC
Q 019203 39 SEEDGITMIKHAFSKGITFFDTA----------DVYGQN--ANEVLLGKALKQLP-REKIQVATKFGIAGIGVAGVIVKG 105 (344)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta----------~~Yg~g--~sE~~lg~~l~~~~-r~~~~i~tK~~~~~~~~~~~~~~~ 105 (344)
+.++..+..+.+.+.|+..+|-- +.||.. ..-+.+-+.++..+ .-.+-|+.|+..... .
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~--------~ 136 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWD--------D 136 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccC--------C
Confidence 56777888888888999988852 345532 13344445554421 111456667532210 1
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEecCCCCCC--CHHHHHHHHHHHHHcCcccEEecCCC-CHHHHHHHhhcCCcceee
Q 019203 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDTSV--PIEETIGEMKKLVEEGKIKYIGLSEA-SPGTIRRAHAVHPITAVQ 182 (344)
Q Consensus 106 ~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~--~~~e~~~~L~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q 182 (344)
. +...+-+ +.|+.+|+ |.+.+|...... .-...|+.+..+++.-.+.-++.... +.+.+.++++....+.++
T Consensus 137 ~-~~~~~~~-~~l~~~Gv---d~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~ 211 (231)
T cd02801 137 E-EETLELA-KALEDAGA---SALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVM 211 (231)
T ss_pred c-hHHHHHH-HHHHHhCC---CEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEE
Confidence 1 2233333 34566775 555667653211 11124666777777666776776655 677777777766667766
Q ss_pred ccc
Q 019203 183 MEW 185 (344)
Q Consensus 183 ~~~ 185 (344)
+--
T Consensus 212 igr 214 (231)
T cd02801 212 IGR 214 (231)
T ss_pred EcH
Confidence 643
No 211
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=28.36 E-value=88 Score=27.87 Aligned_cols=76 Identities=16% Similarity=0.317 Sum_probs=45.2
Q ss_pred CCCccccccccccccCCCCCCCC--CCHHHHHHHHHHHH----HcCCCcccccc--ccCCCcHHHHHHHHHhc-------
Q 019203 15 TQGLEVSKLGFGCMNLSGGYSSP--VSEEDGITMIKHAF----SKGITFFDTAD--VYGQNANEVLLGKALKQ------- 79 (344)
Q Consensus 15 ~tg~~vs~lglG~~~~~~~~~~~--~~~~~~~~~l~~A~----~~Gin~~Dta~--~Yg~g~sE~~lg~~l~~------- 79 (344)
.+|+++|.+||.+=+=- -+|+. ...+++.++++.|+ +.||+.|--|. .|=.-.+|+...++...
T Consensus 65 etgv~ipSmClSaHRRf-PfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~d~eT~~rFi~g~~~a~~l 143 (287)
T COG3623 65 ETGVRIPSMCLSAHRRF-PFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEADEETRQRFIEGLKWAVEL 143 (287)
T ss_pred HhCCCccchhhhhhccC-CCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccCCHHHHHHHHHHHHHHHHH
Confidence 57899999999763210 12332 23566777777765 67999998773 44222345555555432
Q ss_pred CCCCCeEEEecc
Q 019203 80 LPREKIQVATKF 91 (344)
Q Consensus 80 ~~r~~~~i~tK~ 91 (344)
.-+..|.++.-.
T Consensus 144 A~~aqV~lAvEi 155 (287)
T COG3623 144 AARAQVMLAVEI 155 (287)
T ss_pred HHhhccEEEeee
Confidence 245666666554
No 212
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=28.28 E-value=5.3e+02 Score=24.60 Aligned_cols=100 Identities=16% Similarity=0.108 Sum_probs=58.7
Q ss_pred cCCChHHHHHHHHHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCc-ccEEecCCCCHHHHHHHhhcCCccee
Q 019203 103 VKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPGTIRRAHAVHPITAV 181 (344)
Q Consensus 103 ~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~ 181 (344)
..++.+...+-+ +.|.++|+++|++- +|... ++-++.++.+.+.|. .+.++.+-.....++.+.+. .++.+
T Consensus 21 ~~~s~e~k~~ia-~~L~~~GV~~IE~G---~p~~~---~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~-g~~~i 92 (378)
T PRK11858 21 VVFTNEEKLAIA-RMLDEIGVDQIEAG---FPAVS---EDEKEAIKAIAKLGLNASILALNRAVKSDIDASIDC-GVDAV 92 (378)
T ss_pred CCCCHHHHHHHH-HHHHHhCCCEEEEe---CCCcC---hHHHHHHHHHHhcCCCeEEEEEcccCHHHHHHHHhC-CcCEE
Confidence 356777655544 46999999999975 34322 233555666665554 44555554456777777665 33444
Q ss_pred ecccccccc---------ch-----HhhHHHHHHHhCCceeec
Q 019203 182 QMEWSLWTR---------DI-----EEEIIPLCRELGIGIVPY 210 (344)
Q Consensus 182 q~~~n~l~~---------~~-----~~~l~~~~~~~gi~v~a~ 210 (344)
.+.+..-+. .. -.+.++++++.|+.|...
T Consensus 93 ~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~ 135 (378)
T PRK11858 93 HIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFS 135 (378)
T ss_pred EEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 443332221 11 146788999999887653
No 213
>PF14502 HTH_41: Helix-turn-helix domain
Probab=28.21 E-value=79 Score=20.60 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=24.9
Q ss_pred HHHHHHHHHHcCCC--HHHHHHHHHHhCCCCe
Q 019203 251 YFRIGNLAKKYNCT--SAQLALAWVLGQGDDV 280 (344)
Q Consensus 251 ~~~l~~ia~~~~~s--~aqlal~~~l~~~~v~ 280 (344)
++.+.+++++++++ ..|-||+++-..+.|.
T Consensus 6 i~tI~e~~~~~~vs~GtiQ~Alk~Le~~gaI~ 37 (48)
T PF14502_consen 6 IPTISEYSEKFGVSRGTIQNALKFLEENGAIK 37 (48)
T ss_pred cCCHHHHHHHhCcchhHHHHHHHHHHHCCcEE
Confidence 45788999999987 6899999999888654
No 214
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=28.15 E-value=2.8e+02 Score=24.45 Aligned_cols=71 Identities=14% Similarity=0.135 Sum_probs=50.8
Q ss_pred cCCChHHHHHHHHHHHhhcCC-Cc-------------------------eeEEEecCCCCCCCH---HHHHHHHHHHHHc
Q 019203 103 VKGAPDYVRSCCEASLKRLDV-DY-------------------------IDLYYQHRVDTSVPI---EETIGEMKKLVEE 153 (344)
Q Consensus 103 ~~~~~~~i~~~~~~sL~~Lg~-d~-------------------------iDl~~lh~~~~~~~~---~e~~~~L~~l~~~ 153 (344)
.+.+...+++.+++.-++|+. +| .+++.+..|..-.++ ...-+.+.+++.+
T Consensus 103 ~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~e 182 (245)
T COG4555 103 NGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNE 182 (245)
T ss_pred hhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcC
Confidence 456777778888888888775 22 345555555443333 4778889999999
Q ss_pred CcccEEecCCCCHHHHHHHhhc
Q 019203 154 GKIKYIGLSEASPGTIRRAHAV 175 (344)
Q Consensus 154 G~ir~iGvs~~~~~~l~~~~~~ 175 (344)
|+ .+=+|+|..+.+++++..
T Consensus 183 gr--~viFSSH~m~EvealCDr 202 (245)
T COG4555 183 GR--AVIFSSHIMQEVEALCDR 202 (245)
T ss_pred Cc--EEEEecccHHHHHHhhhe
Confidence 98 788999999999887764
No 215
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=28.13 E-value=86 Score=22.92 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=22.5
Q ss_pred hhHHHHHHHhCCceeecccCccccc
Q 019203 194 EEIIPLCRELGIGIVPYSPLGRGFF 218 (344)
Q Consensus 194 ~~l~~~~~~~gi~v~a~spl~~G~L 218 (344)
..+++.++++||+++--.+|+.-+.
T Consensus 30 ~~I~~~A~e~~VPi~~~~~LAr~L~ 54 (82)
T TIGR00789 30 ERIIEIAKKHGIPIVEDPDLVDVLL 54 (82)
T ss_pred HHHHHHHHHcCCCEEeCHHHHHHHH
Confidence 6799999999999999999997664
No 216
>PTZ00413 lipoate synthase; Provisional
Probab=27.98 E-value=5.6e+02 Score=24.76 Aligned_cols=159 Identities=13% Similarity=0.197 Sum_probs=83.8
Q ss_pred CCHHHHHHHHHHHHHcCCCccccccccC----CCcHHHHHHHHHhcCCC--CCeEEEeccCcCCCCCCccccCCChHHHH
Q 019203 38 VSEEDGITMIKHAFSKGITFFDTADVYG----QNANEVLLGKALKQLPR--EKIQVATKFGIAGIGVAGVIVKGAPDYVR 111 (344)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~Dta~~Yg----~g~sE~~lg~~l~~~~r--~~~~i~tK~~~~~~~~~~~~~~~~~~~i~ 111 (344)
.|.++..++-+++.+.|++++=.+...+ +|.++ .+.+.++.++. .++.|..=++-.. .+.+.++
T Consensus 177 lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL~D~ga~-~~a~~I~~Ir~~~p~~~IevligDf~---------g~~e~l~ 246 (398)
T PTZ00413 177 LDPNEPEKVAKAVAEMGVDYIVMTMVDRDDLPDGGAS-HVARCVELIKESNPELLLEALVGDFH---------GDLKSVE 246 (398)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEEEcCCCCChhhHH-HHHHHHHHHHccCCCCeEEEcCCccc---------cCHHHHH
Confidence 5888888888888999998775444443 23244 33444444322 2455554443111 1333232
Q ss_pred HHHHHHHhhcCCCceeEEEecCCCC-----------CCCHHHHHHHHHHHHHc--Cccc-----EEecCCCCHHHHHHHh
Q 019203 112 SCCEASLKRLDVDYIDLYYQHRVDT-----------SVPIEETIGEMKKLVEE--GKIK-----YIGLSEASPGTIRRAH 173 (344)
Q Consensus 112 ~~~~~sL~~Lg~d~iDl~~lh~~~~-----------~~~~~e~~~~L~~l~~~--G~ir-----~iGvs~~~~~~l~~~~ 173 (344)
.|..-|+ |.| =|+... ...+++.|+.|+..++. +.|. -+|+..-..+.++-+.
T Consensus 247 -----~L~eAG~---dvy-nHNLETv~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLGET~eEvie~m~ 317 (398)
T PTZ00413 247 -----KLANSPL---SVY-AHNIECVERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGETEEEVRQTLR 317 (398)
T ss_pred -----HHHhcCC---CEE-ecccccCHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceEeeeeEecCCCCHHHHHHHHH
Confidence 3344443 333 344321 23578889999988874 3332 2565543333332222
Q ss_pred h--cCCcceeec-ccc-------c----cccchHhhHHHHHHHhCCceeecccCcc
Q 019203 174 A--VHPITAVQM-EWS-------L----WTRDIEEEIIPLCRELGIGIVPYSPLGR 215 (344)
Q Consensus 174 ~--~~~~~~~q~-~~n-------~----l~~~~~~~l~~~~~~~gi~v~a~spl~~ 215 (344)
. ...++++-+ +|= + +.++....+-+.+.+.|...++.+||-.
T Consensus 318 dLrelGVDivtIGQYL~Ps~~h~~V~~yv~P~~F~~~~~~a~~~Gf~~v~sgPlVR 373 (398)
T PTZ00413 318 DLRTAGVSAVTLGQYLQPTKTRLKVSRYAHPKEFEMWEEEAMKMGFLYCASGPLVR 373 (398)
T ss_pred HHHHcCCcEEeeccccCCCcccCCceeccCHHHHHHHHHHHHHcCCceEEecCccc
Confidence 2 234444333 221 1 1111225677788899999999999863
No 217
>PLN02321 2-isopropylmalate synthase
Probab=27.98 E-value=6.3e+02 Score=26.19 Aligned_cols=109 Identities=22% Similarity=0.217 Sum_probs=55.4
Q ss_pred cCCChHHHHHHHHHHHhhcCCCceeEEE-ecCCCCCCCHHHHHHHHHHHHHcC-----c-ccEEecCCCCHHHHHHHhhc
Q 019203 103 VKGAPDYVRSCCEASLKRLDVDYIDLYY-QHRVDTSVPIEETIGEMKKLVEEG-----K-IKYIGLSEASPGTIRRAHAV 175 (344)
Q Consensus 103 ~~~~~~~i~~~~~~sL~~Lg~d~iDl~~-lh~~~~~~~~~e~~~~L~~l~~~G-----~-ir~iGvs~~~~~~l~~~~~~ 175 (344)
..++.+.-.+-++ .|.++|+++|.+-. ..+|+ + .+.++.+.+....+ . .+-.+++-.....++.+++.
T Consensus 103 ~~~s~eeKl~Ia~-~L~~lGVd~IEvGfP~~Sp~---D-~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~dId~A~~a 177 (632)
T PLN02321 103 ATLTSKEKLDIAR-QLAKLGVDIIEAGFPIASPD---D-LEAVKTIAKEVGNEVDEDGYVPVICGLSRCNKKDIDAAWEA 177 (632)
T ss_pred CCCCHHHHHHHHH-HHHHcCCCEEEEeCcCCCcc---H-HHHHHHHHHhcccCCCccccceeeeeehhccHHhHHHHHHH
Confidence 3466766555454 59999999888853 23322 1 22233333222121 1 22334444455666666554
Q ss_pred C---C--cceeec-------cccccccchH-----hhHHHHHHHhCCceeecccCccc
Q 019203 176 H---P--ITAVQM-------EWSLWTRDIE-----EEIIPLCRELGIGIVPYSPLGRG 216 (344)
Q Consensus 176 ~---~--~~~~q~-------~~n~l~~~~~-----~~l~~~~~~~gi~v~a~spl~~G 216 (344)
. + ...+.+ ++++-....+ .+.+++++++|...+.|++-..+
T Consensus 178 l~~a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~EDa~ 235 (632)
T PLN02321 178 VKHAKRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPEDAG 235 (632)
T ss_pred hcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEecccCC
Confidence 1 1 111222 2222111111 57888999999877777776533
No 218
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=27.84 E-value=2.5e+02 Score=24.38 Aligned_cols=88 Identities=16% Similarity=0.187 Sum_probs=54.9
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEEecCCC-CHHHHHHHhhcCCcceeecc
Q 019203 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA-SPGTIRRAHAVHPITAVQME 184 (344)
Q Consensus 106 ~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q~~ 184 (344)
+++..... -+.|-.-|+..+-+=+ + ..+.++.+++++++..=-.||..+. +.++++.+++..- +++..
T Consensus 18 ~~e~a~~~-~~al~~~Gi~~iEit~-~-------t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA-~Fivs- 86 (204)
T TIGR01182 18 DVDDALPL-AKALIEGGLRVLEVTL-R-------TPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGA-QFIVS- 86 (204)
T ss_pred CHHHHHHH-HHHHHHcCCCEEEEeC-C-------CccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCC-CEEEC-
Confidence 45544443 4467777876555543 1 1345555666665543356888765 7888888877533 33322
Q ss_pred ccccccchHhhHHHHHHHhCCceee
Q 019203 185 WSLWTRDIEEEIIPLCRELGIGIVP 209 (344)
Q Consensus 185 ~n~l~~~~~~~l~~~~~~~gi~v~a 209 (344)
+.. ..+++++|+++||.++.
T Consensus 87 --P~~---~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 87 --PGL---TPELAKHAQDHGIPIIP 106 (204)
T ss_pred --CCC---CHHHHHHHHHcCCcEEC
Confidence 221 25899999999999887
No 219
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=27.83 E-value=3.2e+02 Score=24.39 Aligned_cols=73 Identities=19% Similarity=0.120 Sum_probs=48.0
Q ss_pred HHHHHHHHHHcCcccEEecCCCCHHHHHHHhhcCCcceeecccccccc-chHhhHHHHHHHhCCceeecccCccc
Q 019203 143 TIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWTR-DIEEEIIPLCRELGIGIVPYSPLGRG 216 (344)
Q Consensus 143 ~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~l~~-~~~~~l~~~~~~~gi~v~a~spl~~G 216 (344)
-++.+.++. .+.=-..|=|-++.+.+.++++...++++|+.....-- .....+...|+.+|+.++..+-+..+
T Consensus 166 d~~~~~~l~-~~~PIa~dEs~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~gi~~~~~~~~es~ 239 (263)
T cd03320 166 DLAELRRLA-AGVPIALDESLRRLDDPLALAAAGALGALVLKPALLGGPRALLELAEEARARGIPAVVSSALESS 239 (263)
T ss_pred HHHHHHHhh-cCCCeeeCCccccccCHHHHHhcCCCCEEEECchhcCCHHHHHHHHHHHHHcCCCEEEEcchhhH
Confidence 345555555 33333455555677778888887788888887665322 11267899999999999887555443
No 220
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=27.78 E-value=4.4e+02 Score=23.49 Aligned_cols=40 Identities=10% Similarity=0.119 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHHHHHcCCCccccccccCCCcHH-HHHHHHHh
Q 019203 38 VSEEDGITMIKHAFSKGITFFDTADVYGQNANE-VLLGKALK 78 (344)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~sE-~~lg~~l~ 78 (344)
.+.++..++++...+.||..++++--. .+..+ +.+.+..+
T Consensus 17 ~~~~~k~~i~~~L~~~Gv~~iE~g~p~-~~~~~~e~~~~l~~ 57 (259)
T cd07939 17 FSREEKLAIARALDEAGVDEIEVGIPA-MGEEEREAIRAIVA 57 (259)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC-CCHHHHHHHHHHHh
Confidence 367888999999999999999996322 23355 45554444
No 221
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=27.64 E-value=3.9e+02 Score=23.13 Aligned_cols=48 Identities=17% Similarity=0.204 Sum_probs=26.8
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEEecCC
Q 019203 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE 163 (344)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~iGvs~ 163 (344)
.+++.+.+ .++..+ +|++|||.... .+.++.|.+...-..++.+.+.+
T Consensus 64 ~~~~~i~~----~~~~~~---~d~vQLHg~e~----~~~~~~l~~~~~~~iik~i~v~~ 111 (210)
T PRK01222 64 ASDEEIDE----IVETVP---LDLLQLHGDET----PEFCRQLKRRYGLPVIKALRVRS 111 (210)
T ss_pred CCHHHHHH----HHHhcC---CCEEEECCCCC----HHHHHHHHhhcCCcEEEEEecCC
Confidence 34555533 445555 68999998532 22333333322235688888864
No 222
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=27.37 E-value=3.8e+02 Score=22.63 Aligned_cols=100 Identities=9% Similarity=0.046 Sum_probs=57.6
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccE-EecCCCCHHHHHHHhhcCCcceeec
Q 019203 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKY-IGLSEASPGTIRRAHAVHPITAVQM 183 (344)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~-iGvs~~~~~~l~~~~~~~~~~~~q~ 183 (344)
.+...+.+.++ .+.+.|.|+|-+-....+... .....++.++++++...+.- +.+-..+.....+.+.....+.+|+
T Consensus 8 ~~~~~~~~~~~-~~~~~g~d~i~~~~~Dg~~~~-~~~~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~v 85 (210)
T TIGR01163 8 ADFARLGEEVK-AVEEAGADWIHVDVMDGHFVP-NLTFGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIITV 85 (210)
T ss_pred CCHHHHHHHHH-HHHHcCCCEEEEcCCCCCCCC-CcccCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEE
Confidence 44556666666 566888888777533333211 11234566666665433322 5555555655555555667788888
Q ss_pred cccccccchHhhHHHHHHHhCCcee
Q 019203 184 EWSLWTRDIEEEIIPLCRELGIGIV 208 (344)
Q Consensus 184 ~~n~l~~~~~~~l~~~~~~~gi~v~ 208 (344)
+.... ......++.+++.|+.+.
T Consensus 86 h~~~~--~~~~~~~~~~~~~g~~~~ 108 (210)
T TIGR01163 86 HPEAS--EHIHRLLQLIKDLGAKAG 108 (210)
T ss_pred ccCCc--hhHHHHHHHHHHcCCcEE
Confidence 66542 222567788888887643
No 223
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=27.26 E-value=99 Score=18.44 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHcCCCHHHHH
Q 019203 248 KSIYFRIGNLAKKYNCTSAQLA 269 (344)
Q Consensus 248 ~~~~~~l~~ia~~~~~s~aqla 269 (344)
.+..+.+.++|++.|+|.+++.
T Consensus 8 ~~~~~~l~~~a~~~g~s~s~~i 29 (39)
T PF01402_consen 8 DELYERLDELAKELGRSRSELI 29 (39)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHH
T ss_pred HHHHHHHHHHHHHHCcCHHHHH
Confidence 3566899999999999988854
No 224
>PRK09875 putative hydrolase; Provisional
Probab=27.04 E-value=5e+02 Score=23.88 Aligned_cols=52 Identities=10% Similarity=0.087 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHHHHcCCC-ccccccccCCCcHHHHHHHHHhcCCCCCeEEEeccCcC
Q 019203 39 SEEDGITMIKHAFSKGIT-FFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIA 94 (344)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin-~~Dta~~Yg~g~sE~~lg~~l~~~~r~~~~i~tK~~~~ 94 (344)
+.+.+.+-|....++|++ .+|.. .+|.|++=+.+.+.-+ +..+-|..-.|.+
T Consensus 32 ~~~~~~~el~~~~~~Gg~tiVd~T-~~g~GRd~~~l~~is~---~tgv~Iv~~TG~y 84 (292)
T PRK09875 32 QYAFICQEMNDLMTRGVRNVIEMT-NRYMGRNAQFMLDVMR---ETGINVVACTGYY 84 (292)
T ss_pred cHHHHHHHHHHHHHhCCCeEEecC-CCccCcCHHHHHHHHH---HhCCcEEEcCcCC
Confidence 455566666667777776 56654 5677888878877765 3456555544544
No 225
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=26.90 E-value=4.9e+02 Score=23.87 Aligned_cols=43 Identities=12% Similarity=0.076 Sum_probs=33.4
Q ss_pred HHHHHHHHHcCC------CHHHHHHHHHHhCCCCeEEecCCCCHHHHHHH
Q 019203 252 FRIGNLAKKYNC------TSAQLALAWVLGQGDDVVPIPGTTKMKNLDDN 295 (344)
Q Consensus 252 ~~l~~ia~~~~~------s~aqlal~~~l~~~~v~~vi~G~~~~~~l~en 295 (344)
..|.++|++.+. ++.++-..|...... ..+..|+|+|+.+-+.
T Consensus 225 ~rL~eia~~~~~~t~~Ie~~~el~~~~~~~~~~-VGitaGASTP~~li~e 273 (281)
T PRK12360 225 QKLVKICEKNCPNTFHIETADELDLEMLKDYKI-IGITAGASTPDWIIEE 273 (281)
T ss_pred HHHHHHHHHHCCCEEEECChHHCCHHHhCCCCE-EEEEccCCCCHHHHHH
Confidence 468888888774 688888899987644 5778999999976554
No 226
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=26.84 E-value=6.2e+02 Score=24.89 Aligned_cols=108 Identities=12% Similarity=0.099 Sum_probs=56.2
Q ss_pred cccCCCcHHHHHHHHHhc----CCCCCeEEEeccCcCCCCCCccccCCChHHHHHHHHHHHhhcC-CCceeEEEecCCCC
Q 019203 62 DVYGQNANEVLLGKALKQ----LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLD-VDYIDLYYQHRVDT 136 (344)
Q Consensus 62 ~~Yg~g~sE~~lg~~l~~----~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg-~d~iDl~~lh~~~~ 136 (344)
-.|| .|+-|-+++++ .+.+=++|.|-+-..- --+.+...+++.-++.. ..-+.++.++.|+.
T Consensus 72 ~VfG---g~~~L~~aI~~~~~~~~P~~I~V~ttC~~ei----------IGDDi~~v~~~~~~~~p~~~~~pvi~v~tpgF 138 (455)
T PRK14476 72 TILG---GDENVEEAILNICKKAKPKIIGLCTTGLTET----------RGDDVAGALKEIRARHPELADTPIVYVSTPDF 138 (455)
T ss_pred eEeC---CHHHHHHHHHHHHHhhCCCEEEEeCcchHhh----------hhccHHHHHHHHHhhccccCCCeEEEecCCCC
Confidence 4677 46666666655 3345566777763221 11223333333222221 11367889999876
Q ss_pred CCCH----HHHHHHHHH-HH--------HcCcccEEecCCC---CHHHHHHHhhcCCcceee
Q 019203 137 SVPI----EETIGEMKK-LV--------EEGKIKYIGLSEA---SPGTIRRAHAVHPITAVQ 182 (344)
Q Consensus 137 ~~~~----~e~~~~L~~-l~--------~~G~ir~iGvs~~---~~~~l~~~~~~~~~~~~q 182 (344)
.... +.+++++.+ +. ++++|--||-+++ +.+.++++++...+.++.
T Consensus 139 ~g~~~~G~~~a~~al~~~~~~~~~~~~~~~~~VNiIgg~~~~~~D~~elk~lL~~~Gl~v~~ 200 (455)
T PRK14476 139 KGALEDGWAAAVEAIVEALVPPASSTGRRPRQVNVLPGSHLTPGDIEELREIIEAFGLEPII 200 (455)
T ss_pred CCcHHHHHHHHHHHHHHHhcccccCCCCCCCcEEEECCCCCCcccHHHHHHHHHHcCCceEE
Confidence 5332 233333322 22 2455778864443 456777777776666554
No 227
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=26.71 E-value=1.4e+02 Score=31.53 Aligned_cols=211 Identities=15% Similarity=0.099 Sum_probs=113.8
Q ss_pred CCCCeEEEeccCcCCCCCCccccCCChHHHHHHHH--HHHhhcCCCceeEE--EecCCCCCCCHHHHHHHHHHHHHcCcc
Q 019203 81 PREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCE--ASLKRLDVDYIDLY--YQHRVDTSVPIEETIGEMKKLVEEGKI 156 (344)
Q Consensus 81 ~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~--~sL~~Lg~d~iDl~--~lh~~~~~~~~~e~~~~L~~l~~~G~i 156 (344)
++..+-|+||+......+.-....+.+-.+..... .+-.+|.+|--|++ ++|--.... -.+....+...+++|
T Consensus 645 r~G~LNlAs~LP~~fv~PDLGPk~y~AYG~~~e~gr~~gtTnLH~dvSDaVNILvyv~e~~~-~~~~~~~~~k~~~~~-- 721 (889)
T KOG1356|consen 645 RDGKLNLASKLPEGFVRPDLGPKLYNAYGVSTELGRGDGTTNLHLDVSDAVNILVYVGEPPG-QIEQIAKVLKKIQEG-- 721 (889)
T ss_pred CCCccchHhhCcccccCCCCCchhhhhccccccccCCCCceeeceehhhhhhheeeeccCCc-hHHhHHHHHHhhhhc--
Confidence 45667899999765432200000011111111112 34556766666654 444433332 334555666666666
Q ss_pred cEEecCCCCHHHHHHHhhcCCcceee----ccccccccchHhhHHHHHHHhCCceeecccCcccccCCCCCCCCCCCCcc
Q 019203 157 KYIGLSEASPGTIRRAHAVHPITAVQ----MEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSF 232 (344)
Q Consensus 157 r~iGvs~~~~~~l~~~~~~~~~~~~q----~~~n~l~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~ 232 (344)
.++++.. ..+..++ .-++++.++.-..+.+|.+++.... |. ......+++.++++
T Consensus 722 -----------~~de~~~-~~~~~~~e~~GALWhIF~~~Dv~KireyL~k~~~E~--------~~-~~~~v~hPIhDQS~ 780 (889)
T KOG1356|consen 722 -----------DLDEITR-SRISSVSETPGALWHIFRAQDVPKIREYLRKVCKEQ--------GH-EVPKVHHPIHDQSW 780 (889)
T ss_pred -----------chhhhhh-hhccccccCCcchhhhhhhcchHHHHHHHHHhhHHh--------cC-CCCcccCCCcccce
Confidence 2222111 1233333 3456665554467777777765542 21 11122233333322
Q ss_pred cccccCCcCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHhccCC---CCCHHHHH
Q 019203 233 LHFLPRFKGENLDRNKSIYFRIGNLAKKYNCTSAQLALAWVLGQGDDVVPIPGTTKMKNLDDNIDSLRI---KLTKEDLK 309 (344)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~aqlal~~~l~~~~v~~vi~G~~~~~~l~enl~a~~~---~Lt~~~~~ 309 (344)
. ++. .-.+++-++||+.+ |.+-|---.+|++-+--+.||+.+-.+... -+++|.+.
T Consensus 781 Y----------Ld~-----~lr~RLkeEyGVe~------WtfvQ~LGdAVfIPAGaPHQVrNLkSCikVa~DFVSPE~v~ 839 (889)
T KOG1356|consen 781 Y----------LDR-----YLRRRLKEEYGVEP------WTFVQFLGDAVFIPAGAPHQVRNLKSCIKVAEDFVSPEHVS 839 (889)
T ss_pred e----------ccH-----HHHHHHHHHhCCCc------cchhhcccceEEecCCCcHHhhhhhhHHHHHHhhCChhhHH
Confidence 1 111 23456778999876 444332235777777778888877665543 58999998
Q ss_pred HHHhhCCCCccCCCCCchhhhhhhhhc
Q 019203 310 EISDAVPIEEVAGNRDPEGFDKASWKF 336 (344)
Q Consensus 310 ~i~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (344)
+=-.+..+.+..+..+.++.+.++.++
T Consensus 840 ec~rLT~EfR~Lp~~h~~~eDKLqvK~ 866 (889)
T KOG1356|consen 840 ECFRLTQEFRQLPQNHKNHEDKLQVKN 866 (889)
T ss_pred HHHHHHHHHhhCCCcccchHHHHHHHH
Confidence 888888888888877777777776654
No 228
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=26.61 E-value=1.6e+02 Score=28.02 Aligned_cols=50 Identities=22% Similarity=0.276 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEE
Q 019203 107 PDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYI 159 (344)
Q Consensus 107 ~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~i 159 (344)
.+.+.+.+.+.|+.||+++ |.+.-........+.+.+ +..|.+.++|+.|
T Consensus 103 ~d~~~~~f~~~l~~lgi~~-d~~~~T~~y~~g~~~~~i--~~~L~~~~~I~~i 152 (353)
T cd00674 103 AEHFERPFEESLEKLGIEV-EFISQSQMYKSGLYDENI--LIALEKRDEIMAI 152 (353)
T ss_pred HHHHHHHHHHHHHHcCCee-eeeecCCchhhchHHHHH--HHHHHHCChHHHH
Confidence 5567888999999999975 755544444444444433 2455667776643
No 229
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=26.61 E-value=6.3e+02 Score=24.89 Aligned_cols=110 Identities=14% Similarity=0.129 Sum_probs=59.3
Q ss_pred ccccCCCcHHHHHHHHHhc----CC-CCCeEEEeccCcCCCCCCccccCCChHHHHHHHHHHHhhcCCC----ceeEEEe
Q 019203 61 ADVYGQNANEVLLGKALKQ----LP-REKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVD----YIDLYYQ 131 (344)
Q Consensus 61 a~~Yg~g~sE~~lg~~l~~----~~-r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d----~iDl~~l 131 (344)
.-.|| .|+-|-+++++ .+ .+=++|.|-+...- --+.|..-+++.-++|.-+ .+.++.+
T Consensus 68 dvVfG---G~~kL~~aI~~~~~~~~~p~~I~V~ttC~~ei----------IGDDi~~v~~~~~~~~~~e~~~~~~~vv~v 134 (457)
T TIGR02932 68 SAVFG---GAKRIEEGVLTLARRYPNLRVIPIITTCSTET----------IGDDIEGSIRKVNRALKKEFPDRKIKLVPV 134 (457)
T ss_pred ceEEC---cHHHHHHHHHHHHHhCCCCCEEEEECCchHHh----------hcCCHHHHHHHHHhhhhhhcCCCCCeEEEe
Confidence 35788 46677777765 22 23467778775432 1222443343332222111 3688999
Q ss_pred cCCCCCCCH----HHHHHHHHHHH-H-----cCcccEEecCC--CCHHHHHHHhhcCCcceeec
Q 019203 132 HRVDTSVPI----EETIGEMKKLV-E-----EGKIKYIGLSE--ASPGTIRRAHAVHPITAVQM 183 (344)
Q Consensus 132 h~~~~~~~~----~e~~~~L~~l~-~-----~G~ir~iGvs~--~~~~~l~~~~~~~~~~~~q~ 183 (344)
+.|+-.... +.++++|.+.. . +++|--||-.+ -+.+.++++++...+.++.+
T Consensus 135 ~tpgF~gs~~~G~~~a~~ali~~~~~~~~~~~~~VNii~~~~~~gD~~eik~lL~~~Gl~vn~l 198 (457)
T TIGR02932 135 HTPSFKGSQVTGYAECVKSVIKTIAAKKGEPSGKLNVFPGWVNPGDVVLLKHYFSEMGVDANIL 198 (457)
T ss_pred eCCCCcCcHHHHHHHHHHHHHHHHhhccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCEEEE
Confidence 999866432 34444433222 2 35677776432 24457777777766666654
No 230
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=26.58 E-value=6e+02 Score=24.61 Aligned_cols=162 Identities=14% Similarity=0.198 Sum_probs=81.4
Q ss_pred cccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCccccccccCCC----cHHHHHHHHHhc-----CCCCCeEEEe
Q 019203 19 EVSKLGFGCMNLSGGYSSPVSEEDGITMIKHAFSKGITFFDTADVYGQN----ANEVLLGKALKQ-----LPREKIQVAT 89 (344)
Q Consensus 19 ~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g----~sE~~lg~~l~~-----~~r~~~~i~t 89 (344)
.|=+++.|==+. |+.-....++.+.+..|+..|= ...|+.+ .+-+.+.+.+.+ ...+++|+++
T Consensus 62 ~iipl~~GDPsv---~~~~~ts~~a~~Av~~al~Sgk-----~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~lts 133 (447)
T KOG0259|consen 62 PILPLGHGDPSV---YPCFRTSQEAEQAVVDALRSGK-----GNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTS 133 (447)
T ss_pred eeccCCCCCCCc---cccccCCHHHHHHHHHHHhcCC-----CCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEec
Confidence 455555553322 3332345677888888888763 3466653 366777777655 3578899988
Q ss_pred ccCcCCCCCCccccCCChHHHHHHHHHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEEecC---CC--
Q 019203 90 KFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS---EA-- 164 (344)
Q Consensus 90 K~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~iGvs---~~-- 164 (344)
-+. ..|+-.++ +|.+=| -. ++|-+|.-. +-++..... .=.||++-+= +|
T Consensus 134 GC~---------------qAIe~~i~-~LA~p~---aN-ILlPrPGfp--~Y~~~a~~~----~lEVR~ydlLPe~~weI 187 (447)
T KOG0259|consen 134 GCS---------------QAIELAIS-SLANPG---AN-ILLPRPGFP--LYDTRAIYS----GLEVRYYDLLPEKDWEI 187 (447)
T ss_pred cch---------------HHHHHHHH-HhcCCC---Cc-eecCCCCCc--hHHHhhhhc----CceeEeecccCccccee
Confidence 762 12322222 333333 22 334444322 222211111 1124555442 22
Q ss_pred CHHHHHHHhhcCCccee-eccccc----cccchHhhHHHHHHHhCCceeecccCc
Q 019203 165 SPGTIRRAHAVHPITAV-QMEWSL----WTRDIEEEIIPLCRELGIGIVPYSPLG 214 (344)
Q Consensus 165 ~~~~l~~~~~~~~~~~~-q~~~n~----l~~~~~~~l~~~~~~~gi~v~a~spl~ 214 (344)
+...++.++....++.+ ..+-|+ +..+..+++.+.|+++||-|++=-...
T Consensus 188 DL~~veal~DENT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~ 242 (447)
T KOG0259|consen 188 DLDGVEALADENTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYG 242 (447)
T ss_pred chHHHHHhhccCeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcc
Confidence 22345555554333332 223332 233334778888888888888754444
No 231
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=26.42 E-value=4.7e+02 Score=24.69 Aligned_cols=27 Identities=15% Similarity=0.124 Sum_probs=20.6
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEEec
Q 019203 105 GAPDYVRSCCEASLKRLDVDYIDLYYQH 132 (344)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh 132 (344)
-+.+.+.+.++..+ .|+.+++.+|.+.
T Consensus 163 qt~e~~~~~l~~~~-~l~~~~is~y~l~ 189 (374)
T PRK05799 163 QTLEDWKETLEKVV-ELNPEHISCYSLI 189 (374)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEEeccE
Confidence 56788888777654 5899999988765
No 232
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=26.35 E-value=5e+02 Score=23.66 Aligned_cols=71 Identities=18% Similarity=0.120 Sum_probs=50.8
Q ss_pred cCCChHHHHHHHHHHHhhcCC--------------------------CceeEEEecCCCCC-CCH--HHHHHHHHHHHHc
Q 019203 103 VKGAPDYVRSCCEASLKRLDV--------------------------DYIDLYYQHRVDTS-VPI--EETIGEMKKLVEE 153 (344)
Q Consensus 103 ~~~~~~~i~~~~~~sL~~Lg~--------------------------d~iDl~~lh~~~~~-~~~--~e~~~~L~~l~~~ 153 (344)
.......+++.++.-|+|+++ ...+++.|.-|-.- .++ +-+-++..+++++
T Consensus 100 kGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~ 179 (300)
T COG4152 100 KGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEE 179 (300)
T ss_pred cCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhc
Confidence 346778888899999999885 22344444444322 222 3445788999999
Q ss_pred CcccEEecCCCCHHHHHHHhhc
Q 019203 154 GKIKYIGLSEASPGTIRRAHAV 175 (344)
Q Consensus 154 G~ir~iGvs~~~~~~l~~~~~~ 175 (344)
|. .|=+|+|..++++++++.
T Consensus 180 Ga--tIifSsH~Me~vEeLCD~ 199 (300)
T COG4152 180 GA--TIIFSSHRMEHVEELCDR 199 (300)
T ss_pred CC--EEEEecchHHHHHHHhhh
Confidence 98 889999999999998775
No 233
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=26.25 E-value=4.2e+02 Score=25.12 Aligned_cols=97 Identities=19% Similarity=0.167 Sum_probs=57.6
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCc-ccEEecCCCCHHHHHHHhhcCCcceee
Q 019203 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPGTIRRAHAVHPITAVQ 182 (344)
Q Consensus 104 ~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~q 182 (344)
.++.+...+-+ +.|.++|+++|.+- +|... ++-++.++.+.+.+. .+-.+++......++.+.+.. ++.+.
T Consensus 18 ~~s~~~k~~ia-~~L~~~Gv~~IEvG---~p~~~---~~~~e~i~~i~~~~~~~~v~~~~r~~~~di~~a~~~g-~~~i~ 89 (363)
T TIGR02090 18 SLTVEQKVEIA-RKLDELGVDVIEAG---FPIAS---EGEFEAIKKISQEGLNAEICSLARALKKDIDKAIDCG-VDSIH 89 (363)
T ss_pred CCCHHHHHHHH-HHHHHcCCCEEEEe---CCCCC---hHHHHHHHHHHhcCCCcEEEEEcccCHHHHHHHHHcC-cCEEE
Confidence 46666655544 46999999999975 33222 233667777766555 444555566677787776653 33444
Q ss_pred cccc--ccc------cch------HhhHHHHHHHhCCcee
Q 019203 183 MEWS--LWT------RDI------EEEIIPLCRELGIGIV 208 (344)
Q Consensus 183 ~~~n--~l~------~~~------~~~l~~~~~~~gi~v~ 208 (344)
+... ..+ ... -.+.+++++++|+.|.
T Consensus 90 i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~ 129 (363)
T TIGR02090 90 TFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVE 129 (363)
T ss_pred EEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 4222 111 111 1468889999998764
No 234
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=26.05 E-value=2.5e+02 Score=25.78 Aligned_cols=44 Identities=18% Similarity=0.302 Sum_probs=30.8
Q ss_pred HHHHHHHHHcCC------CHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHH
Q 019203 252 FRIGNLAKKYNC------TSAQLALAWVLGQGDDVVPIPGTTKMKNLDDNI 296 (344)
Q Consensus 252 ~~l~~ia~~~~~------s~aqlal~~~l~~~~v~~vi~G~~~~~~l~enl 296 (344)
..|.++|++++. ++.++...|+-... ...+..|+|+|+.+-+.+
T Consensus 225 ~kL~eia~~~~~~t~~Ie~~~el~~~~l~~~~-~VGItaGASTP~~ii~eV 274 (281)
T PF02401_consen 225 RKLAEIAKEHGKPTYHIETADELDPEWLKGVK-KVGITAGASTPDWIIEEV 274 (281)
T ss_dssp HHHHHHHHHCTTCEEEESSGGG--HHHHTT-S-EEEEEE-TTS-HHHHHHH
T ss_pred HHHHHHHHHhCCCEEEeCCccccCHhHhCCCC-EEEEEccCCCCHHHHHHH
Confidence 578899999875 78899999988776 457789999999876643
No 235
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=25.85 E-value=6.9e+02 Score=25.10 Aligned_cols=106 Identities=15% Similarity=0.214 Sum_probs=60.7
Q ss_pred ccccCCCcHHHH----HHHHHhcCC-CCCeEEEeccCcCCCCCCccccCCChHHHHHHHHHHHhhcCCCceeEEEecCCC
Q 019203 61 ADVYGQNANEVL----LGKALKQLP-REKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVD 135 (344)
Q Consensus 61 a~~Yg~g~sE~~----lg~~l~~~~-r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~ 135 (344)
.-.|| .|+- |-++++..+ .+-++|.|-+...- .-+.|..-+++.-++.. -+.++.+|.|+
T Consensus 106 diVfG---Ge~kL~~~I~ea~~~~~~p~~I~V~tTC~t~l----------IGDDi~av~k~~~~~~~--~~pVi~v~tpG 170 (513)
T TIGR01861 106 HVVFG---AEKLLKQNIIEAFKAFPHIKRMTIYQTCATAL----------IGDDIAAIAKEVMEEMP--DVDIFVCNSPG 170 (513)
T ss_pred ceEeC---cHHHHHHHHHHHHHhCCCCCeEEEEccCchhh----------ccCCHHHHHHHHHHhcC--CCcEEEEeCCC
Confidence 34677 3554 444554443 55688888885432 23335555555444441 16899999997
Q ss_pred CCCC-----HHHHHHH-HHHHHH--------cCcccEEecCCC--CHHHHHHHhhcCCccee
Q 019203 136 TSVP-----IEETIGE-MKKLVE--------EGKIKYIGLSEA--SPGTIRRAHAVHPITAV 181 (344)
Q Consensus 136 ~~~~-----~~e~~~~-L~~l~~--------~G~ir~iGvs~~--~~~~l~~~~~~~~~~~~ 181 (344)
-... ...+.++ ++.++. .++|--||--|+ +.+.++++++...+.++
T Consensus 171 F~G~~~~gg~~~a~~ali~~~v~~~~~~~~~~~~VNliG~~n~~gD~~eik~lLe~~Gl~v~ 232 (513)
T TIGR01861 171 FAGPSQSGGHHKINIAWINQKVGTVEPEIKGKHVINYVGEYNIQGDQEVMVDYFQRMGIQVL 232 (513)
T ss_pred ccCccccchHHHHHHHHHHHhhcccCcccCCCCeEEEeCCCCCccCHHHHHHHHHHCCCeEE
Confidence 6532 2222333 333332 256777886554 55778888887665554
No 236
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=25.48 E-value=71 Score=24.82 Aligned_cols=28 Identities=11% Similarity=0.197 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHHHcCCCccccccccCC
Q 019203 39 SEEDGITMIKHAFSKGITFFDTADVYGQ 66 (344)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~ 66 (344)
+...+.+....+++.|++.||.+..|..
T Consensus 75 ~~~~~~~~~~~~~~~g~~ViD~s~~~R~ 102 (121)
T PF01118_consen 75 PHGASKELAPKLLKAGIKVIDLSGDFRL 102 (121)
T ss_dssp CHHHHHHHHHHHHHTTSEEEESSSTTTT
T ss_pred chhHHHHHHHHHhhCCcEEEeCCHHHhC
Confidence 6677889999999999999999999864
No 237
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=25.46 E-value=5.4e+02 Score=23.75 Aligned_cols=138 Identities=14% Similarity=0.081 Sum_probs=82.2
Q ss_pred CHHHHHHHHHHHHHcCCCccccc---------cccCCC---cHHHHHHHHHhcC-CCCCeEEEeccCcCCCCCCccccCC
Q 019203 39 SEEDGITMIKHAFSKGITFFDTA---------DVYGQN---ANEVLLGKALKQL-PREKIQVATKFGIAGIGVAGVIVKG 105 (344)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta---------~~Yg~g---~sE~~lg~~l~~~-~r~~~~i~tK~~~~~~~~~~~~~~~ 105 (344)
+.++..+..+.+.+.|+..||.- +.|+.. ...+++.+.++.. ..-.+-|+.|+......
T Consensus 73 ~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~-------- 144 (319)
T TIGR00737 73 DPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDD-------- 144 (319)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCC--------
Confidence 67778888888888999888852 123321 1235556666542 12235678886432211
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEecCCCCCCCH--HHHHHHHHHHHHcCcccEEecCCC-CHHHHHHHhhcCCcceee
Q 019203 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPI--EETIGEMKKLVEEGKIKYIGLSEA-SPGTIRRAHAVHPITAVQ 182 (344)
Q Consensus 106 ~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~--~e~~~~L~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q 182 (344)
....+ ..+-+.|+..|+ |.+.+|........ ...|+.+.++++.=.+--||.... +++.+.++++....+.++
T Consensus 145 ~~~~~-~~~a~~l~~~G~---d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~Vm 220 (319)
T TIGR00737 145 AHINA-VEAARIAEDAGA---QAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVM 220 (319)
T ss_pred CcchH-HHHHHHHHHhCC---CEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEE
Confidence 11112 233445677785 55566754322111 235788888888766788887765 778888888777788888
Q ss_pred cccccc
Q 019203 183 MEWSLW 188 (344)
Q Consensus 183 ~~~n~l 188 (344)
+---++
T Consensus 221 igR~~l 226 (319)
T TIGR00737 221 IGRGAL 226 (319)
T ss_pred EChhhh
Confidence 754443
No 238
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=25.45 E-value=6.4e+02 Score=25.04 Aligned_cols=124 Identities=13% Similarity=0.027 Sum_probs=71.2
Q ss_pred ceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhcCCcceeecccccccc--------------
Q 019203 125 YIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWTR-------------- 190 (344)
Q Consensus 125 ~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~l~~-------------- 190 (344)
-.|+++.--|+.......++..+..+...+.|-.-..|..++..+.+.+......++-.+||+...
T Consensus 80 ~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~Lvevv~g~~t~~ 159 (495)
T PRK07531 80 GADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTSP 159 (495)
T ss_pred CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCcccCceEEEcCCCCCCH
Confidence 468888877766544456777777776666553333444566777665544333444555554321
Q ss_pred chHhhHHHHHHHhCCceeecccCcccccCCCCCCCCCCCCcccccccCCcCcchhhhHHH-HHHHHHHHHHcCCCHHHHH
Q 019203 191 DIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSFLHFLPRFKGENLDRNKSI-YFRIGNLAKKYNCTSAQLA 269 (344)
Q Consensus 191 ~~~~~l~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~ia~~~~~s~aqla 269 (344)
.....+.++++..|...+.......|++. ...+.. +.+...++++.++++.++-
T Consensus 160 e~~~~~~~~~~~lG~~~v~~~k~~~gfi~-------------------------nrl~~a~~~EA~~L~~~g~~s~~~id 214 (495)
T PRK07531 160 ETIRRAKEILREIGMKPVHIAKEIDAFVG-------------------------DRLLEALWREALWLVKDGIATTEEID 214 (495)
T ss_pred HHHHHHHHHHHHcCCEEEeecCCCcchhH-------------------------HHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 11134556666667655554444444432 223444 4777788889999988865
Q ss_pred HHHH
Q 019203 270 LAWV 273 (344)
Q Consensus 270 l~~~ 273 (344)
-...
T Consensus 215 ~~~~ 218 (495)
T PRK07531 215 DVIR 218 (495)
T ss_pred HHHh
Confidence 4433
No 239
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=25.43 E-value=4.9e+02 Score=23.24 Aligned_cols=159 Identities=12% Similarity=0.067 Sum_probs=76.8
Q ss_pred CHHHHHHHHHHHHHcCCCccccccccCCC--cHHHHHH--HHHhcC-CCCCeEEEeccCcCCCCCCccccCCChHHHHHH
Q 019203 39 SEEDGITMIKHAFSKGITFFDTADVYGQN--ANEVLLG--KALKQL-PREKIQVATKFGIAGIGVAGVIVKGAPDYVRSC 113 (344)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g--~sE~~lg--~~l~~~-~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~ 113 (344)
+.++..+....+.+.|+.+++-=-.|-.. ..+.+.. ..+++. ..-.+.++-..- .. + .....+.+...+.
T Consensus 26 ~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~~~~~~~~l~~~~~~~PiI~T~R~~-~e--G--G~~~~~~~~~~~l 100 (253)
T PRK02412 26 TLEEVLAEALAISKYDADIIEWRADFLEKISDVESVLAAAPAIREKFAGKPLLFTFRTA-KE--G--GEIALSDEEYLAL 100 (253)
T ss_pred CHHHHHHHHHHHhhcCCCEEEEEechhhccCCHHHHHHHHHHHHHhcCCCcEEEEECCh-hh--C--CCCCCCHHHHHHH
Confidence 56776677777777898887765444321 1232322 223321 122344433321 11 1 1123344433344
Q ss_pred HHHHHhhcC-CCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEEecCCC----CH--HHHHHHhhc---CCcceeec
Q 019203 114 CEASLKRLD-VDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA----SP--GTIRRAHAV---HPITAVQM 183 (344)
Q Consensus 114 ~~~sL~~Lg-~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~iGvs~~----~~--~~l~~~~~~---~~~~~~q~ 183 (344)
++ .+-++| +||||+=+-. ..+....+....+++.++-|+ |-| ++ +.+...++. ...+++=+
T Consensus 101 l~-~~~~~~~~d~vDiEl~~-------~~~~~~~l~~~~~~~~~kvI~-S~H~f~~tP~~~~l~~~~~~~~~~gaDivKi 171 (253)
T PRK02412 101 IK-AVIKSGLPDYIDVELFS-------GKDVVKEMVAFAHEHGVKVVL-SYHDFEKTPPKEEIVERLRKMESLGADIVKI 171 (253)
T ss_pred HH-HHHhcCCCCEEEEeccC-------ChHHHHHHHHHHHHcCCEEEE-eeCCCCCCcCHHHHHHHHHHHHHhCCCEEEE
Confidence 44 445778 8999994321 134455555555567778777 654 22 444333222 23344444
Q ss_pred cccccccchHhhHHHHHHH-----hCCceeecc
Q 019203 184 EWSLWTRDIEEEIIPLCRE-----LGIGIVPYS 211 (344)
Q Consensus 184 ~~n~l~~~~~~~l~~~~~~-----~gi~v~a~s 211 (344)
-..+-.......++.+.++ .++++++++
T Consensus 172 a~~a~~~~D~~~ll~~~~~~~~~~~~~P~i~~~ 204 (253)
T PRK02412 172 AVMPQSEQDVLTLLNATREMKELYADQPLITMS 204 (253)
T ss_pred EecCCCHHHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 3333333222345555543 356766554
No 240
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=25.40 E-value=2.8e+02 Score=24.02 Aligned_cols=88 Identities=9% Similarity=0.138 Sum_probs=53.4
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEEecCCC-CHHHHHHHhhcCCcceeecc
Q 019203 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA-SPGTIRRAHAVHPITAVQME 184 (344)
Q Consensus 106 ~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q~~ 184 (344)
+++...+.++ .|-+-|+..+-+=+ - ..+..+.+++++++..=-.||..+. +.++++++++..- .++..
T Consensus 14 ~~~~a~~ia~-al~~gGi~~iEit~---~-----tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA-~FivS- 82 (201)
T PRK06015 14 DVEHAVPLAR-ALAAGGLPAIEITL---R-----TPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGS-RFIVS- 82 (201)
T ss_pred CHHHHHHHHH-HHHHCCCCEEEEeC---C-----CccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCC-CEEEC-
Confidence 4555544444 56667766555433 1 1234455566665543356888765 7888888877532 22222
Q ss_pred ccccccchHhhHHHHHHHhCCceee
Q 019203 185 WSLWTRDIEEEIIPLCRELGIGIVP 209 (344)
Q Consensus 185 ~n~l~~~~~~~l~~~~~~~gi~v~a 209 (344)
+.. ..+++++|+++||.++.
T Consensus 83 --P~~---~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 83 --PGT---TQELLAAANDSDVPLLP 102 (201)
T ss_pred --CCC---CHHHHHHHHHcCCCEeC
Confidence 222 36899999999999887
No 241
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=25.36 E-value=5.4e+02 Score=24.99 Aligned_cols=108 Identities=13% Similarity=0.113 Sum_probs=0.0
Q ss_pred ccccccccccCCC----CCCCCCCHHHHHHHHHHHHHcCCCccccccccCCCcHHHHHHHHHhcCCCCCeEEEeccCcCC
Q 019203 20 VSKLGFGCMNLSG----GYSSPVSEEDGITMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAG 95 (344)
Q Consensus 20 vs~lglG~~~~~~----~~~~~~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~sE~~lg~~l~~~~r~~~~i~tK~~~~~ 95 (344)
+..|.+|.-++.. ..+...+.+++.+.++.+-+.|+..+...=.||
T Consensus 152 ~~rvslGvQS~~~~~L~~l~R~~~~~~~~~ai~~l~~~g~~~i~~dlI~G------------------------------ 201 (430)
T PRK08208 152 VNRLSIGVQSFHDSELHALHRPQKRADVHQALEWIRAAGFPILNIDLIYG------------------------------ 201 (430)
T ss_pred CCEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecC------------------------------
Q ss_pred CCCCccccCCChHHHHHHHHHHHhhcCCCceeEEEecCCCCC----------CCHHHHHHHHHHHHHcCcccEEecCCC
Q 019203 96 IGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS----------VPIEETIGEMKKLVEEGKIKYIGLSEA 164 (344)
Q Consensus 96 ~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~----------~~~~e~~~~L~~l~~~G~ir~iGvs~~ 164 (344)
.+.-+.+.+.+.++..+ +|+++++.+|.+.-...+ ....+.++...+.-.+.=-+.+++++|
T Consensus 202 ------lP~qt~e~~~~~l~~~~-~l~~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy~~yei~~f 273 (430)
T PRK08208 202 ------IPGQTHASWMESLDQAL-VYRPEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDLLLEAGYTQTSMRMF 273 (430)
T ss_pred ------CCCCCHHHHHHHHHHHH-hCCCCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHHHHHcCCeEEeecce
No 242
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=25.05 E-value=2.9e+02 Score=27.84 Aligned_cols=75 Identities=23% Similarity=0.146 Sum_probs=53.4
Q ss_pred CCCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhcCCccee---eccccccccchHhhHHHHHHHhCCceeecccC
Q 019203 137 SVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAV---QMEWSLWTRDIEEEIIPLCRELGIGIVPYSPL 213 (344)
Q Consensus 137 ~~~~~e~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~---q~~~n~l~~~~~~~l~~~~~~~gi~v~a~spl 213 (344)
....+++.+.+.+.+++.+|+.+|+-.+...++..+++...+..+ |--+++-.. ...++..-..|.-+..-.|+
T Consensus 409 ~id~~~I~ew~~~~~~~~~i~~v~~D~~g~~~~~~~l~~~g~~lv~i~Q~~~~l~~~---~k~~e~~~~~g~i~~~dnp~ 485 (546)
T COG4626 409 LIDYAEIVEWFMEIREKFLIKLVGFDPSGAGEFRDALAEAGIKVVGIPQGFKKLSGA---IKTIERKLAEGVLVHGDNPL 485 (546)
T ss_pred ccCHHHHHHHHHHHHHhCCccEEeecccchHHHHHHHHhCCCceeeccchhhhhCch---hHHHHHHHhcCcEEECCCcH
Confidence 345678899999999999999999999999999888888666543 333333222 23455555667777766666
Q ss_pred c
Q 019203 214 G 214 (344)
Q Consensus 214 ~ 214 (344)
.
T Consensus 486 m 486 (546)
T COG4626 486 M 486 (546)
T ss_pred H
Confidence 3
No 243
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=25.01 E-value=2.4e+02 Score=24.88 Aligned_cols=24 Identities=33% Similarity=0.367 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHHHcCCCcccccc
Q 019203 39 SEEDGITMIKHAFSKGITFFDTAD 62 (344)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~ 62 (344)
+.++..++.++|-..|.+|+|.|.
T Consensus 25 d~~~V~~i~~AA~~ggAt~vDIAa 48 (242)
T PF04481_consen 25 DAESVAAIVKAAEIGGATFVDIAA 48 (242)
T ss_pred CHHHHHHHHHHHHccCCceEEecC
Confidence 788899999999999999999986
No 244
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=24.81 E-value=2.9e+02 Score=26.66 Aligned_cols=73 Identities=14% Similarity=0.105 Sum_probs=37.0
Q ss_pred HHHHHHHHHHcCcccEEecCCCCHHHHHHHhhc-CCcceeeccccccccch-HhhHHHHHHHhCCceeecccCcc
Q 019203 143 TIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV-HPITAVQMEWSLWTRDI-EEEIIPLCRELGIGIVPYSPLGR 215 (344)
Q Consensus 143 ~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~q~~~n~l~~~~-~~~l~~~~~~~gi~v~a~spl~~ 215 (344)
++..++.+.+.+.++.+-+...+.+.+++++.. .++.++..+-|+.-+-. ...+.++|+++|+.++.=...+.
T Consensus 112 t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~ 186 (405)
T PRK08776 112 SWRLFNALAKKGHFALITADLTDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLS 186 (405)
T ss_pred HHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCcc
Confidence 333444443344445444444455666655532 23334444555533322 25677778888877775544443
No 245
>PRK08084 DNA replication initiation factor; Provisional
Probab=24.71 E-value=2.4e+02 Score=24.79 Aligned_cols=45 Identities=9% Similarity=0.227 Sum_probs=33.3
Q ss_pred ceeEEEecCCCCCC---CH-HHHHHHHHHHHHcCcccEEecCCCCHHHH
Q 019203 125 YIDLYYQHRVDTSV---PI-EETIGEMKKLVEEGKIKYIGLSEASPGTI 169 (344)
Q Consensus 125 ~iDl~~lh~~~~~~---~~-~e~~~~L~~l~~~G~ir~iGvs~~~~~~l 169 (344)
..|++.|...+... .+ +++.+.+..+++.|+++-|+.|+..+..+
T Consensus 97 ~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l 145 (235)
T PRK08084 97 QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQL 145 (235)
T ss_pred hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHc
Confidence 35888887765432 22 35678899999999999999999777664
No 246
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=24.55 E-value=1.1e+02 Score=28.18 Aligned_cols=16 Identities=31% Similarity=0.681 Sum_probs=15.0
Q ss_pred hhHHHHHHHhCCceee
Q 019203 194 EEIIPLCRELGIGIVP 209 (344)
Q Consensus 194 ~~l~~~~~~~gi~v~a 209 (344)
.+++++|+++||.||.
T Consensus 75 ~elv~yA~~rgI~viP 90 (303)
T cd02742 75 KDIIEYAAARGIEVIP 90 (303)
T ss_pred HHHHHHHHHcCCEEEE
Confidence 7899999999999996
No 247
>PRK07328 histidinol-phosphatase; Provisional
Probab=24.53 E-value=5.1e+02 Score=23.17 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=31.6
Q ss_pred HHHHHHHHhhcCCCceeEEEecCCCCC-------------CCHHHHH----HHHHHHHHcCcccEEecC
Q 019203 111 RSCCEASLKRLDVDYIDLYYQHRVDTS-------------VPIEETI----GEMKKLVEEGKIKYIGLS 162 (344)
Q Consensus 111 ~~~~~~sL~~Lg~d~iDl~~lh~~~~~-------------~~~~e~~----~~L~~l~~~G~ir~iGvs 162 (344)
...+++.|++-..||+ |.-+|+.+.. ...++++ +.+.++.+.|.+.-||=-
T Consensus 94 ~~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~ 161 (269)
T PRK07328 94 EEFLERLLEAYPFDYV-IGSVHYLGAWGFDNPDFVAEYEERDLDELYRRYFALVEQAARSGLFDIIGHP 161 (269)
T ss_pred HHHHHHHHHhCCCCeE-EEEEeecCCcCCCChhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCEeeCc
Confidence 3455667777777877 8888986421 1222333 356777788887766643
No 248
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=24.03 E-value=1.6e+02 Score=26.91 Aligned_cols=97 Identities=15% Similarity=0.215 Sum_probs=51.3
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEe-cCCCCCCCHHHHHHHHHHHHHcC-------cccEEecCCCCHHHHHHHhhc
Q 019203 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQ-HRVDTSVPIEETIGEMKKLVEEG-------KIKYIGLSEASPGTIRRAHAV 175 (344)
Q Consensus 104 ~~~~~~i~~~~~~sL~~Lg~d~iDl~~l-h~~~~~~~~~e~~~~L~~l~~~G-------~ir~iGvs~~~~~~l~~~~~~ 175 (344)
.++.+.-.+-++..+..+|+++|.+-.. .++ +-++++.++.+.. +++.+++... ...++.+.+.
T Consensus 15 ~~s~e~K~~i~~~L~~~~Gv~~IEvg~~~~s~-------~e~~av~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~A~~~ 86 (280)
T cd07945 15 SFSPSEKLNIAKILLQELKVDRIEVASARVSE-------GEFEAVQKIIDWAAEEGLLDRIEVLGFVDG-DKSVDWIKSA 86 (280)
T ss_pred ccCHHHHHHHHHHHHHHhCCCEEEecCCCCCH-------HHHHHHHHHHHHhhhhccccCcEEEEecCc-HHHHHHHHHC
Confidence 4677766677776679999988888642 222 1123333333322 3555555432 3445555554
Q ss_pred CCcceeec---------cccccccchH-----hhHHHHHHHhCCceee
Q 019203 176 HPITAVQM---------EWSLWTRDIE-----EEIIPLCRELGIGIVP 209 (344)
Q Consensus 176 ~~~~~~q~---------~~n~l~~~~~-----~~l~~~~~~~gi~v~a 209 (344)
.++.+.+ .+|+-....+ .+++++|+++|+.+..
T Consensus 87 -g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~ 133 (280)
T cd07945 87 -GAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNI 133 (280)
T ss_pred -CCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 2222222 2232111111 4568899999987654
No 249
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=24.03 E-value=6.2e+02 Score=23.93 Aligned_cols=120 Identities=13% Similarity=0.181 Sum_probs=72.3
Q ss_pred CCHHHHHHHHHHHHHc---CCCccccccccCCCcHHHHHHHHHhcCCCCCeEEEeccCcCCCCCCccccCCChHHHHHHH
Q 019203 38 VSEEDGITMIKHAFSK---GITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCC 114 (344)
Q Consensus 38 ~~~~~~~~~l~~A~~~---Gin~~Dta~~Yg~g~sE~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~ 114 (344)
.+.++..+++....+. =+-.+|..+..+. --..+-+.+. ...-++|.+|+-... .....+.+..-+
T Consensus 48 ~~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s--~~~~l~~~~~--~~piilV~NK~DLl~-------k~~~~~~~~~~l 116 (360)
T TIGR03597 48 LNDDDFLNLLNSLGDSNALIVYVVDIFDFEGS--LIPELKRFVG--GNPVLLVGNKIDLLP-------KSVNLSKIKEWM 116 (360)
T ss_pred CCHHHHHHHHhhcccCCcEEEEEEECcCCCCC--ccHHHHHHhC--CCCEEEEEEchhhCC-------CCCCHHHHHHHH
Confidence 3556666666665432 2235565443332 1122223332 345578999975322 123455666666
Q ss_pred HHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEEecCCCCHHHH
Q 019203 115 EASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTI 169 (344)
Q Consensus 115 ~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~iGvs~~~~~~l 169 (344)
.+-++.+|....+++.+. .-....++++++.+.++.+.+.+-.+|.+|..-.-+
T Consensus 117 ~~~~k~~g~~~~~i~~vS-Ak~g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStl 170 (360)
T TIGR03597 117 KKRAKELGLKPVDIILVS-AKKGNGIDELLDKIKKARNKKDVYVVGVTNVGKSSL 170 (360)
T ss_pred HHHHHHcCCCcCcEEEec-CCCCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH
Confidence 666777876544666554 344456889999998887777899999999877554
No 250
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=24.02 E-value=68 Score=20.64 Aligned_cols=21 Identities=24% Similarity=0.061 Sum_probs=13.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHH
Q 019203 252 FRIGNLAKKYNCTSAQLALAW 272 (344)
Q Consensus 252 ~~l~~ia~~~~~s~aqlal~~ 272 (344)
+.++.+.++.|++..++|-.-
T Consensus 5 ~~l~~~r~~~gltq~~lA~~~ 25 (58)
T TIGR03070 5 MLVRARRKALGLTQADLADLA 25 (58)
T ss_pred HHHHHHHHHcCCCHHHHHHHh
Confidence 456666667777777777544
No 251
>PRK06298 type III secretion system protein; Validated
Probab=23.91 E-value=79 Score=30.06 Aligned_cols=26 Identities=23% Similarity=0.455 Sum_probs=23.5
Q ss_pred hhHHHHHHHhCCceeecccCcccccC
Q 019203 194 EEIIPLCRELGIGIVPYSPLGRGFFG 219 (344)
Q Consensus 194 ~~l~~~~~~~gi~v~a~spl~~G~L~ 219 (344)
..+.+.|+++||+++..-||++.+..
T Consensus 293 ~~Ir~iA~e~~VPiven~pLARaLy~ 318 (356)
T PRK06298 293 KRIIAEAEKYGVPIMRNVPLAHQLLD 318 (356)
T ss_pred HHHHHHHHHcCCCEEeCHHHHHHHHH
Confidence 67999999999999999999988763
No 252
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=23.84 E-value=5.8e+02 Score=23.55 Aligned_cols=145 Identities=17% Similarity=0.175 Sum_probs=82.3
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEecCCCCC----CCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhh-cCCcce
Q 019203 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDTS----VPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHA-VHPITA 180 (344)
Q Consensus 106 ~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~----~~~~e~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~-~~~~~~ 180 (344)
..+.+++.+.+-+++.|+|++=++-+-+-... .....++++|++..+++.-. .++..+-.... .....+
T Consensus 130 ~~e~~~~DI~~f~~~~~~d~vVvvn~asTE~~~~~~~~~~~t~~~l~~al~~~~~~------~~aS~~YA~AAl~~g~~f 203 (295)
T PF07994_consen 130 QVEQIREDIRDFKKENGLDRVVVVNVASTERYIPVIPGVHDTLEALEKALDENDPE------ISASMLYAYAALEAGVPF 203 (295)
T ss_dssp HHHHHHHHHHHHHHHTT-SCEEEEE-SSCC-S---CCCCCSSHHHHHHHHHTT-TT------HHHHHHHHHHHHHTTEEE
T ss_pred HHHHHHHHHHHHHHHhCCCcEEEEECCCCCCCCCCCccccCCHHHHHHHhhcCCCc------CChHHHHHHHHHHCCCCe
Confidence 45667888999999999875433333322221 12335788888888866532 23333322211 133333
Q ss_pred e-eccccccccchHhhHHHHHHHhCCceeec---ccCcccccCCCCCCCCCCCCcccccccCCcCcchhhhHHHHHHHHH
Q 019203 181 V-QMEWSLWTRDIEEEIIPLCRELGIGIVPY---SPLGRGFFGGKAVVENVPADSFLHFLPRFKGENLDRNKSIYFRIGN 256 (344)
Q Consensus 181 ~-q~~~n~l~~~~~~~l~~~~~~~gi~v~a~---spl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 256 (344)
+ =.+-+..+- ..+.+.++++|+.+..- +|++ ....-.+-++.+
T Consensus 204 vN~tP~~~a~~---P~l~ela~~~gvpi~GdD~KT~lA------------------------------AplvlDLirl~~ 250 (295)
T PF07994_consen 204 VNGTPSNIADD---PALVELAEEKGVPIAGDDGKTPLA------------------------------APLVLDLIRLAK 250 (295)
T ss_dssp EE-SSSTTTTS---HHHHHHHHHHTEEEEESSBS-HHH------------------------------HHHHHHHHHHHH
T ss_pred EeccCccccCC---HHHHHHHHHcCCCeecchHhhhhh------------------------------hHHHHHHHHHHH
Confidence 2 223333222 57899999999997652 1222 223445568889
Q ss_pred HHHHcCCCHHHHHHHHHHhCCCCeEEecCCCCHHHH
Q 019203 257 LAKKYNCTSAQLALAWVLGQGDDVVPIPGTTKMKNL 292 (344)
Q Consensus 257 ia~~~~~s~aqlal~~~l~~~~v~~vi~G~~~~~~l 292 (344)
+|.+.|+.-.+-.++|.+..|. + =.|......+
T Consensus 251 la~r~g~~Gv~~~ls~ffK~P~--~-~~g~~~~~~l 283 (295)
T PF07994_consen 251 LALRRGMGGVQEWLSFFFKSPM--V-PPGPPQEHDL 283 (295)
T ss_dssp HHHHTTS-EEHHHHHHHBSS-T-----TTSTT--HH
T ss_pred HHHHcCCCChhHHHHHHhcCCC--c-cCCCCCCCcH
Confidence 9999999888889999999996 2 2666655555
No 253
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=23.78 E-value=2.4e+02 Score=25.22 Aligned_cols=97 Identities=15% Similarity=0.123 Sum_probs=60.4
Q ss_pred HHHHHHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHH-HHcCcccEEecCCC--------CHHHHHHHhhcCCccee
Q 019203 111 RSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKL-VEEGKIKYIGLSEA--------SPGTIRRAHAVHPITAV 181 (344)
Q Consensus 111 ~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l-~~~G~ir~iGvs~~--------~~~~l~~~~~~~~~~~~ 181 (344)
.+.++..|+-.| +|||++=+-|-......++.++..-+| ++-|.--+.| .++ ..++..+.+....|+++
T Consensus 11 ~~~~~d~Le~~g-~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~V~v~~G-Gtl~E~~~~q~~~~~Yl~~~k~lGf~~I 88 (237)
T TIGR03849 11 PKFVEDYLKVCG-DYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPG-GTLFEIAHSKGKFDEYLNECDELGFEAV 88 (237)
T ss_pred HHHHHHHHHHhh-hheeeEEecCceEeeccHHHHHHHHHHHHHcCCeEeCC-ccHHHHHHHhhhHHHHHHHHHHcCCCEE
Confidence 345678888888 899999999977666555566554444 4455555566 211 11112223334678888
Q ss_pred eccccccccchH--hhHHHHHHHhCCceee
Q 019203 182 QMEWSLWTRDIE--EEIIPLCRELGIGIVP 209 (344)
Q Consensus 182 q~~~n~l~~~~~--~~l~~~~~~~gi~v~a 209 (344)
.+.-..+.-..+ ..+++.++++|..+..
T Consensus 89 EiS~G~~~i~~~~~~rlI~~~~~~g~~v~~ 118 (237)
T TIGR03849 89 EISDGSMEISLEERCNLIERAKDNGFMVLS 118 (237)
T ss_pred EEcCCccCCCHHHHHHHHHHHHhCCCeEec
Confidence 776554443322 5788888888888764
No 254
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=23.64 E-value=3.2e+02 Score=20.51 Aligned_cols=44 Identities=20% Similarity=0.160 Sum_probs=29.0
Q ss_pred HHHHhhcCCcceeeccccccccchHhhHHHHHHHhCCceeecccCcc
Q 019203 169 IRRAHAVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGR 215 (344)
Q Consensus 169 l~~~~~~~~~~~~q~~~n~l~~~~~~~l~~~~~~~gi~v~a~spl~~ 215 (344)
++++++...++.+.+--....+ .++...|-+.|+.|+.=.|++.
T Consensus 54 ~~~ll~~~~~D~V~I~tp~~~h---~~~~~~~l~~g~~v~~EKP~~~ 97 (120)
T PF01408_consen 54 LEELLADEDVDAVIIATPPSSH---AEIAKKALEAGKHVLVEKPLAL 97 (120)
T ss_dssp HHHHHHHTTESEEEEESSGGGH---HHHHHHHHHTTSEEEEESSSSS
T ss_pred HHHHHHhhcCCEEEEecCCcch---HHHHHHHHHcCCEEEEEcCCcC
Confidence 3344444556665553333222 5788889999999999999984
No 255
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=23.63 E-value=1.1e+03 Score=26.60 Aligned_cols=101 Identities=12% Similarity=0.054 Sum_probs=61.2
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHc-Ccc--cEEecCCCCHHHHHHHhhcCCcceee
Q 019203 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEE-GKI--KYIGLSEASPGTIRRAHAVHPITAVQ 182 (344)
Q Consensus 106 ~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~-G~i--r~iGvs~~~~~~l~~~~~~~~~~~~q 182 (344)
+.+.+.+...+. ..-|.+.||+-.= ....+-++.+..+..+.++ -.+ --|-+-++.++.++.+++..+=..+.
T Consensus 366 d~~~a~~~A~~q-ve~GA~iIDVn~~---~~~vd~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~v~eaaLk~~~G~~II 441 (1178)
T TIGR02082 366 DYDEALDIAKQQ-VENGAQILDINVD---YGMLDGVAAMKRFLNLLASEPDISTVPLMLDSSEWAVLEAGLKCIQGKCIV 441 (1178)
T ss_pred CHHHHHHHHHHH-HHCCCCEEEECCC---CCCCCHHHHHHHHHHHHHhccCCCCCeEEEeCCcHHHHHHHHHhcCCCCEE
Confidence 444444444433 3668999999852 1222334455554444443 222 23666788899999999873222344
Q ss_pred ccccccc--cchHhhHHHHHHHhCCceeecc
Q 019203 183 MEWSLWT--RDIEEEIIPLCRELGIGIVPYS 211 (344)
Q Consensus 183 ~~~n~l~--~~~~~~l~~~~~~~gi~v~a~s 211 (344)
+..|... .+. ..+++.+++.|..++.+.
T Consensus 442 NsIs~~~g~~~~-~~~~~l~~~yga~vV~m~ 471 (1178)
T TIGR02082 442 NSISLKDGEERF-IETAKLIKEYGAAVVVMA 471 (1178)
T ss_pred EeCCCCCCCccH-HHHHHHHHHhCCCEEEEe
Confidence 5555542 222 379999999999999875
No 256
>PLN00191 enolase
Probab=23.60 E-value=7.2e+02 Score=24.55 Aligned_cols=97 Identities=10% Similarity=0.095 Sum_probs=66.9
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEEecCC--CCHHHHHHHhhcCCcceee
Q 019203 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE--ASPGTIRRAHAVHPITAVQ 182 (344)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~iGvs~--~~~~~l~~~~~~~~~~~~q 182 (344)
.+++...+-++..+++ .++.++-.|-.. +-|+.+.+|.++.++.-+|=-. .+++.+.++++....++++
T Consensus 295 ~s~~e~i~~~~~L~~~-----y~I~~IEDPl~~----~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~ 365 (457)
T PLN00191 295 KSGDELIDLYKEFVSD-----YPIVSIEDPFDQ----DDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNALL 365 (457)
T ss_pred cCHHHHHHHHHHHhhc-----CCcEEEECCCCc----ccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCCEEE
Confidence 4666555555544433 356677766443 3467777788888887777322 4689999999988889999
Q ss_pred ccccccccc-hHhhHHHHHHHhCCceeec
Q 019203 183 MEWSLWTRD-IEEEIIPLCRELGIGIVPY 210 (344)
Q Consensus 183 ~~~n~l~~~-~~~~l~~~~~~~gi~v~a~ 210 (344)
+..|-.-.- ...++.+.|+.+|+.++..
T Consensus 366 iKl~qiGGITea~~~a~lA~~~G~~~~is 394 (457)
T PLN00191 366 LKVNQIGTVTESIEAVKMSKAAGWGVMTS 394 (457)
T ss_pred ecccccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 887754322 2267899999999999764
No 257
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=23.51 E-value=5.1e+02 Score=22.77 Aligned_cols=105 Identities=16% Similarity=0.157 Sum_probs=58.4
Q ss_pred CCHHHHHHHHHHHHHcCCCccccccccCC------CcHHHHHHHHHhcCCCCCeEEEeccCcCCCCCCccccCCChHHHH
Q 019203 38 VSEEDGITMIKHAFSKGITFFDTADVYGQ------NANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVR 111 (344)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~------g~sE~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~ 111 (344)
.+.++..++++...+.||..++....-.. -..++.+.+..+..+...+...++.+ .+.+
T Consensus 16 ~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~--------------~~~i- 80 (265)
T cd03174 16 FSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNR--------------EKGI- 80 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCc--------------hhhH-
Confidence 37789999999999999999997632211 12445555554433333343333321 2223
Q ss_pred HHHHHHHhhcCCCceeEEEecCC---------CCCCCHHHHHHHHHHHHHcCcccEEec
Q 019203 112 SCCEASLKRLDVDYIDLYYQHRV---------DTSVPIEETIGEMKKLVEEGKIKYIGL 161 (344)
Q Consensus 112 ~~~~~sL~~Lg~d~iDl~~lh~~---------~~~~~~~e~~~~L~~l~~~G~ir~iGv 161 (344)
+... ..|++.+-++.--+. +....++.+.+.++.+++.|.--.+.+
T Consensus 81 ---~~a~-~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 81 ---ERAL-EAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred ---HHHH-hCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3222 335555555542221 111135677788888888887555555
No 258
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=23.43 E-value=7e+02 Score=24.37 Aligned_cols=26 Identities=12% Similarity=0.161 Sum_probs=17.1
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEEe
Q 019203 105 GAPDYVRSCCEASLKRLDVDYIDLYYQ 131 (344)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~d~iDl~~l 131 (344)
-+.+.+.+.++..+ .|+++++.+|.+
T Consensus 215 qt~e~~~~tl~~~~-~l~~~~is~y~L 240 (455)
T TIGR00538 215 QTKESFAKTLEKVA-ELNPDRLAVFNY 240 (455)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEEecC
Confidence 46666777666443 377777777765
No 259
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=23.15 E-value=5.5e+02 Score=23.03 Aligned_cols=100 Identities=19% Similarity=0.153 Sum_probs=62.8
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEE-ecCCCCC-CCHH-H---HHHHHHHHHHcCcccEEecCCCCHHHHHHHhhcCCc
Q 019203 105 GAPDYVRSCCEASLKRLDVDYIDLYY-QHRVDTS-VPIE-E---TIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPI 178 (344)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~d~iDl~~-lh~~~~~-~~~~-e---~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 178 (344)
.+++.+.+.+++.+ .-|.++||+-- --+|+.. ...+ | +...++.+++.-.+ -+.+-++.++.++.+++....
T Consensus 20 ~~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~-plsiDT~~~~vi~~al~~G~~ 97 (257)
T TIGR01496 20 LSVDKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDV-PISVDTYRAEVARAALEAGAD 97 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCCHHHHHHHHHcCCC
Confidence 46677766666554 56899999942 2234332 2233 2 44555566555222 378889999999999987432
Q ss_pred ceeeccccccccchHhhHHHHHHHhCCceeecc
Q 019203 179 TAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYS 211 (344)
Q Consensus 179 ~~~q~~~n~l~~~~~~~l~~~~~~~gi~v~a~s 211 (344)
-+ ...+... ..++++.+++.|..++...
T Consensus 98 iI--Nsis~~~---~~~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 98 II--NDVSGGQ---DPAMLEVAAEYGVPLVLMH 125 (257)
T ss_pred EE--EECCCCC---CchhHHHHHHcCCcEEEEe
Confidence 22 2333332 2468899999999999843
No 260
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.14 E-value=6.6e+02 Score=23.96 Aligned_cols=100 Identities=14% Similarity=0.143 Sum_probs=60.9
Q ss_pred HhhcCCCceeEEEecCCCCC------------CCHHHHHHHHHH-HHHcC---cccEEecC--CCCHHHHHHHhh---cC
Q 019203 118 LKRLDVDYIDLYYQHRVDTS------------VPIEETIGEMKK-LVEEG---KIKYIGLS--EASPGTIRRAHA---VH 176 (344)
Q Consensus 118 L~~Lg~d~iDl~~lh~~~~~------------~~~~e~~~~L~~-l~~~G---~ir~iGvs--~~~~~~l~~~~~---~~ 176 (344)
|...|++.-=.+-||.+++. .+++++++++.+ +.+.| +|+++=+. |.+.+.+.++.+ ..
T Consensus 227 L~~~gl~~~LaiSL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~ 306 (368)
T PRK14456 227 LATSGLKTKLAVSLHSADQEKRERLMPQAARDYPLDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRF 306 (368)
T ss_pred HHHcCCCceEEEEecCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 33345442235678887532 256888888875 44555 24455554 345545554444 34
Q ss_pred Ccceeeccccccccch--------HhhHHHHHHHhCCceeecccCcccc
Q 019203 177 PITAVQMEWSLWTRDI--------EEEIIPLCRELGIGIVPYSPLGRGF 217 (344)
Q Consensus 177 ~~~~~q~~~n~l~~~~--------~~~l~~~~~~~gi~v~a~spl~~G~ 217 (344)
...+.-++||.+.... -..+.+..+++|+.+......+.-+
T Consensus 307 ~~~VnlIpyn~~~~~~~~~ps~e~i~~F~~~L~~~Gi~vtvR~~~G~di 355 (368)
T PRK14456 307 FCKINLIDYNSIVNIKFEPVCSSTRERFRDRLLDAGLQVTVRKSYGTTI 355 (368)
T ss_pred CCeeEEeeeccCCCCCCCCCCHHHHHHHHHHHHHCCCcEEeeCCCCcch
Confidence 4577788999865421 1456677788999999988776433
No 261
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=22.99 E-value=67 Score=33.47 Aligned_cols=77 Identities=17% Similarity=0.135 Sum_probs=50.0
Q ss_pred HHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhcCCcceeeccccc----ccc
Q 019203 115 EASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAVQMEWSL----WTR 190 (344)
Q Consensus 115 ~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~----l~~ 190 (344)
=.=|+.||+.+|-|+=+|.......+. +.|+.-++|-....-- +..-.|+. ..+
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~----------~~gl~n~WGYdP~~fF------------Ap~~~Yss~p~p~~~ 263 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLD----------KSGLNNNWGYDPLNFF------------APEGRYASNPEPATR 263 (697)
T ss_pred HHHHHHhCCceEEEecceEEecccccc----------ccccccccCCCccccc------------CCCccccCCCCcchH
Confidence 457999999999999888876654333 6777777777543211 11122222 222
Q ss_pred chH-hhHHHHHHHhCCceeecccC
Q 019203 191 DIE-EEIIPLCRELGIGIVPYSPL 213 (344)
Q Consensus 191 ~~~-~~l~~~~~~~gi~v~a~spl 213 (344)
-.+ ..++..+++.||+||-=-++
T Consensus 264 i~EfK~mV~~lHkaGI~VILDVVf 287 (697)
T COG1523 264 IKEFKDMVKALHKAGIEVILDVVF 287 (697)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEec
Confidence 222 78999999999999864444
No 262
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=22.98 E-value=7.2e+02 Score=24.34 Aligned_cols=86 Identities=10% Similarity=0.082 Sum_probs=55.5
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHHcCccc-EEecCCCCHHHHHHHhhcCCcceeeccccccccchHhhHHHHHHHhCCc
Q 019203 128 LYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDIEEEIIPLCRELGIG 206 (344)
Q Consensus 128 l~~lh~~~~~~~~~e~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~l~~~~~~~l~~~~~~~gi~ 206 (344)
+.++-.|-+..+..+-++.+.+|.+...|. ..|=+.++.+.+..+++...++++|......--.....+...|+.+|+.
T Consensus 252 ~~~iEePv~~~d~~~~~~~la~Lr~~~~iPIa~dEs~~~~~~~~~li~~~avdi~~~d~~~gGIt~~~kIa~lA~a~Gi~ 331 (441)
T TIGR03247 252 LAYAEDPCGAEQGYSGREVMAEFRRATGLPTATNMIATDWRQMGHALQLQAVDIPLADPHFWTMQGSVRVAQMCHDWGLT 331 (441)
T ss_pred hceEeCCCCcccccchHHHHHHHHHhCCCCEEcCCccCCHHHHHHHHHhCCCCEEeccCCcchHHHHHHHHHHHHHcCCE
Confidence 334555543322112367778887765554 3455567888999999888888888875321111126789999999999
Q ss_pred eeecccC
Q 019203 207 IVPYSPL 213 (344)
Q Consensus 207 v~a~spl 213 (344)
+..++.+
T Consensus 332 v~~h~~~ 338 (441)
T TIGR03247 332 WGSHSNN 338 (441)
T ss_pred EEEeCCc
Confidence 8877654
No 263
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=22.86 E-value=5.1e+02 Score=22.56 Aligned_cols=22 Identities=18% Similarity=0.534 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHHHHcCCCcccc
Q 019203 39 SEEDGITMIKHAFSKGITFFDT 60 (344)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dt 60 (344)
-+|.....++.|++.|+..|++
T Consensus 13 ~pENTl~Af~~A~~~G~d~iE~ 34 (237)
T cd08583 13 TYTNSLDAFEHNYKKGYRVFEV 34 (237)
T ss_pred CCccHHHHHHHHHHhCCCEEEE
Confidence 3577889999999999998875
No 264
>PRK15108 biotin synthase; Provisional
Probab=22.80 E-value=6.4e+02 Score=23.69 Aligned_cols=107 Identities=9% Similarity=0.006 Sum_probs=60.9
Q ss_pred CChHHHHHHHHHHHhhcCCCceeEEEecCCCC-CCCHHHHHHHHHHHHHcCcccEEecCC--CCHHHHHHHhhcCCcc--
Q 019203 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDT-SVPIEETIGEMKKLVEEGKIKYIGLSE--ASPGTIRRAHAVHPIT-- 179 (344)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~-~~~~~e~~~~L~~l~~~G~ir~iGvs~--~~~~~l~~~~~~~~~~-- 179 (344)
.+++.|.+.+.. ...+|+..+-+ ...+..+ ...++.+.+.++.+++.|. .+.+|+ .+.+.++++.+. .++
T Consensus 76 ls~eEI~~~a~~-~~~~G~~~i~i-~~~g~~p~~~~~e~i~~~i~~ik~~~i--~v~~s~G~ls~e~l~~LkeA-Gld~~ 150 (345)
T PRK15108 76 MEVEQVLESARK-AKAAGSTRFCM-GAAWKNPHERDMPYLEQMVQGVKAMGL--ETCMTLGTLSESQAQRLANA-GLDYY 150 (345)
T ss_pred CCHHHHHHHHHH-HHHcCCCEEEE-EecCCCCCcchHHHHHHHHHHHHhCCC--EEEEeCCcCCHHHHHHHHHc-CCCEE
Confidence 688999888875 56789988733 3332222 2346777777888887664 343444 566777666543 112
Q ss_pred -----eeecccccccc--c--hHhhHHHHHHHhCCceeecccCccc
Q 019203 180 -----AVQMEWSLWTR--D--IEEEIIPLCRELGIGIVPYSPLGRG 216 (344)
Q Consensus 180 -----~~q~~~n~l~~--~--~~~~l~~~~~~~gi~v~a~spl~~G 216 (344)
...-.|.-+.. . ..-+.++.+++.|+.+.+...++-|
T Consensus 151 n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~Glg 196 (345)
T PRK15108 151 NHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLG 196 (345)
T ss_pred eeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCC
Confidence 11111111111 1 1156788888889877654444433
No 265
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=22.66 E-value=3.7e+02 Score=25.49 Aligned_cols=89 Identities=11% Similarity=0.154 Sum_probs=0.0
Q ss_pred EEEecCCCCC-----------CCHHHHHHHHHHHHHcCcccEEec----------CCCCHHHHHHHhhcCCcceeecccc
Q 019203 128 LYYQHRVDTS-----------VPIEETIGEMKKLVEEGKIKYIGL----------SEASPGTIRRAHAVHPITAVQMEWS 186 (344)
Q Consensus 128 l~~lh~~~~~-----------~~~~e~~~~L~~l~~~G~ir~iGv----------s~~~~~~l~~~~~~~~~~~~q~~~n 186 (344)
.+.||.|++. -++++++++.+...+... +.|-+ +...+..|.+++...+-.++-++||
T Consensus 215 AiSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~-~rVt~EY~Ll~~VND~~e~A~~L~~ll~~~~~~VNLIP~N 293 (349)
T COG0820 215 AISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSG-RRVTFEYVLLDGVNDSLEHAKELAKLLKGIPCKVNLIPYN 293 (349)
T ss_pred EEecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccC-ceEEEEeeecccccCCHHHHHHHHHHhcCCCceEEEeecC
Q ss_pred ccccch--------HhhHHHHHHHhCCceeecccCcccc
Q 019203 187 LWTRDI--------EEEIIPLCRELGIGIVPYSPLGRGF 217 (344)
Q Consensus 187 ~l~~~~--------~~~l~~~~~~~gi~v~a~spl~~G~ 217 (344)
+..... -....+..+++||.+.....-+..+
T Consensus 294 p~~~~~y~r~~~~~i~~F~~~L~~~gv~~tvR~~~g~DI 332 (349)
T COG0820 294 PVPGSDYERSSKERIRKFLKILKKAGVLVTVRKTRGDDI 332 (349)
T ss_pred CCCCCCccCCcHHHHHHHHHHHHhCCeeEEecccccccc
No 266
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=22.61 E-value=6.4e+02 Score=23.62 Aligned_cols=82 Identities=10% Similarity=0.079 Sum_probs=57.1
Q ss_pred eeEEEecCCCCCCCHHHHHHHHHHHHHcCccc-EEecCCCCHHHHHHHhhcCCcceeecccccccc-chHhhHHHHHHHh
Q 019203 126 IDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTR-DIEEEIIPLCREL 203 (344)
Q Consensus 126 iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~l~~-~~~~~l~~~~~~~ 203 (344)
.++.++-.|-... .++.+.+|.+..-+. +.|=|.++.+.+..+++...++++|+.....-- .....+...|+++
T Consensus 202 ~~i~~iEeP~~~~----d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~v~~d~~~~GGit~~~~~~~lA~~~ 277 (352)
T cd03325 202 YRLLFIEEPVLPE----NVEALAEIAARTTIPIATGERLFSRWDFKELLEDGAVDIIQPDISHAGGITELKKIAAMAEAY 277 (352)
T ss_pred cCCcEEECCCCcc----CHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHc
Confidence 3455555554322 367788888776555 455566788999998887788999987655321 1126899999999
Q ss_pred CCceeecc
Q 019203 204 GIGIVPYS 211 (344)
Q Consensus 204 gi~v~a~s 211 (344)
||.++.++
T Consensus 278 gi~~~~h~ 285 (352)
T cd03325 278 DVALAPHC 285 (352)
T ss_pred CCcEeccC
Confidence 99998765
No 267
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=22.39 E-value=4.4e+02 Score=23.88 Aligned_cols=99 Identities=14% Similarity=0.062 Sum_probs=57.0
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEecCCCCC---CCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhcCCcce
Q 019203 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS---VPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITA 180 (344)
Q Consensus 104 ~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~---~~~~e~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~ 180 (344)
.++.+.- ..+=+.|.++|+++|++-..-.|... .+.+++...+.. ...++..++. .....++++++.. ++.
T Consensus 16 ~~s~e~K-~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~---~~~~~~~~~~-~~~~dv~~A~~~g-~~~ 89 (274)
T cd07938 16 FIPTEDK-IELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPR---RPGVRYSALV-PNLRGAERALAAG-VDE 89 (274)
T ss_pred CcCHHHH-HHHHHHHHHcCCCEEEeCCCCCcccccccCCHHHHHhhccc---CCCCEEEEEC-CCHHHHHHHHHcC-cCE
Confidence 3555544 45555699999999999754444311 233444444443 2346677765 4667788877753 233
Q ss_pred eeccccc---------cccch-----HhhHHHHHHHhCCcee
Q 019203 181 VQMEWSL---------WTRDI-----EEEIIPLCRELGIGIV 208 (344)
Q Consensus 181 ~q~~~n~---------l~~~~-----~~~l~~~~~~~gi~v~ 208 (344)
+.+.... -.... ..+.+++++++|+.+.
T Consensus 90 i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~ 131 (274)
T cd07938 90 VAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVR 131 (274)
T ss_pred EEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 3332222 11111 1467889999999886
No 268
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=22.34 E-value=2.8e+02 Score=22.98 Aligned_cols=73 Identities=16% Similarity=0.135 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHHHcCCCccccccccCCCcHHHHHHHHHhcCCCCCeEEEecc-CcCCCCCCccccCCChHHHHHHHHHH
Q 019203 39 SEEDGITMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKF-GIAGIGVAGVIVKGAPDYVRSCCEAS 117 (344)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~sE~~lg~~l~~~~r~~~~i~tK~-~~~~~~~~~~~~~~~~~~i~~~~~~s 117 (344)
.++...-.+++|-+.||.+|=.|..||. +-.-+-+.+. ..=++++.|-- |... -....+...+++-
T Consensus 12 T~~tle~a~erA~elgik~~vVAS~tG~--tA~k~lemve--g~lkvVvVthh~Gf~e---------~g~~e~~~E~~~~ 78 (186)
T COG1751 12 TDETLEIAVERAKELGIKHIVVASSTGY--TALKALEMVE--GDLKVVVVTHHAGFEE---------KGTQEMDEEVRKE 78 (186)
T ss_pred hHHHHHHHHHHHHhcCcceEEEEecccH--HHHHHHHhcc--cCceEEEEEeeccccc---------CCceecCHHHHHH
Confidence 4455566778888899999999999985 3333333332 11345555543 3222 1233356667888
Q ss_pred HhhcCCC
Q 019203 118 LKRLDVD 124 (344)
Q Consensus 118 L~~Lg~d 124 (344)
|+..|.+
T Consensus 79 L~erGa~ 85 (186)
T COG1751 79 LKERGAK 85 (186)
T ss_pred HHHcCce
Confidence 9999853
No 269
>TIGR00035 asp_race aspartate racemase.
Probab=22.22 E-value=3.9e+02 Score=23.29 Aligned_cols=64 Identities=14% Similarity=0.094 Sum_probs=45.5
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEecCCCCC------------CCHHHHHHHHHHHHHcCcccEEecCCCCHHH
Q 019203 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS------------VPIEETIGEMKKLVEEGKIKYIGLSEASPGT 168 (344)
Q Consensus 104 ~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~------------~~~~e~~~~L~~l~~~G~ir~iGvs~~~~~~ 168 (344)
.-+.+++++-++.+=.+.+-++++.+.+++|+-. .....+.+.++.|.+.| +.+|.+.-.+...
T Consensus 13 ~at~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g-~d~iviaCNTah~ 88 (229)
T TIGR00035 13 LATAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAG-ADFIIMPCNTAHK 88 (229)
T ss_pred HHHHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcC-CCEEEECCccHHH
Confidence 3466777777777777888899999999999542 11234566677776654 7899887766655
No 270
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=22.12 E-value=4.4e+02 Score=21.54 Aligned_cols=23 Identities=13% Similarity=0.267 Sum_probs=19.4
Q ss_pred CHHHHHHHHHHHHHcCCCccccc
Q 019203 39 SEEDGITMIKHAFSKGITFFDTA 61 (344)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta 61 (344)
.++.....++.|++.|...|++-
T Consensus 11 ~pent~~a~~~a~~~g~~~iE~D 33 (189)
T cd08556 11 APENTLAAFRKALEAGADGVELD 33 (189)
T ss_pred CCchHHHHHHHHHHcCCCEEEEE
Confidence 35778899999999999988864
No 271
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.00 E-value=2.4e+02 Score=26.69 Aligned_cols=88 Identities=11% Similarity=-0.056 Sum_probs=0.0
Q ss_pred EEEecCCCCC-----------CCHHHHHHHHHHHHHcC---------cccEEecCCCCHHHHHHHhhcCCcceeeccccc
Q 019203 128 LYYQHRVDTS-----------VPIEETIGEMKKLVEEG---------KIKYIGLSEASPGTIRRAHAVHPITAVQMEWSL 187 (344)
Q Consensus 128 l~~lh~~~~~-----------~~~~e~~~~L~~l~~~G---------~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~ 187 (344)
.+-||.|++. .+++++++++.++.++. .++-+=-+...+..|.+++...+..++-++||+
T Consensus 210 avSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~Li~gvND~~e~a~~L~~ll~~~~~~VNLIp~Np 289 (345)
T PRK14466 210 AISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYIVFKGLNDSLKHAKELVKLLRGIDCRVNLIRFHA 289 (345)
T ss_pred EEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEEEeCCCCCCHHHHHHHHHHHcCCCceEEEEecCC
Q ss_pred cccchH--------hhHHHHHHHhCCceeecccCcc
Q 019203 188 WTRDIE--------EEIIPLCRELGIGIVPYSPLGR 215 (344)
Q Consensus 188 l~~~~~--------~~l~~~~~~~gi~v~a~spl~~ 215 (344)
...... ....+..+++||.+......+.
T Consensus 290 ~~~~~~~~~s~~~~~~F~~~L~~~gi~~tvR~s~G~ 325 (345)
T PRK14466 290 IPGVDLEGSDMARMEAFRDYLTSHGVFTTIRASRGE 325 (345)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCC
No 272
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=21.80 E-value=7.4e+02 Score=24.01 Aligned_cols=111 Identities=14% Similarity=-0.049 Sum_probs=62.4
Q ss_pred CCChHHHHHHHHHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEEecCC---C-CHHHHHHHhhcCCcc
Q 019203 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE---A-SPGTIRRAHAVHPIT 179 (344)
Q Consensus 104 ~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~iGvs~---~-~~~~l~~~~~~~~~~ 179 (344)
..+++.+.+.+.+.+....- ..+-+.+-...+......+.+.++.+++.|.--+|+.+| + +.+.++++.+. .++
T Consensus 53 ~~t~~evl~ev~~d~~~~~~-~~ggVtisGGGepl~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~~-gld 130 (404)
T TIGR03278 53 FIPPQVVLGEVQTSLGFRTG-RDTKVTISGGGDVSCYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLIDN-GVR 130 (404)
T ss_pred cCCHHHHHHHHHHHHHHhcC-CCCEEEEECCcccccCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHHc-CCC
Confidence 35677787888877775532 246666666655555567788888888878766666344 3 44555555443 234
Q ss_pred eeeccccccccch----------H--hhHHHHHHHhCCceeecccCcccc
Q 019203 180 AVQMEWSLWTRDI----------E--EEIIPLCRELGIGIVPYSPLGRGF 217 (344)
Q Consensus 180 ~~q~~~n~l~~~~----------~--~~l~~~~~~~gi~v~a~spl~~G~ 217 (344)
.+.+..+-.+... + .+-++...+ ++.++...|+.-|+
T Consensus 131 ~v~iSvka~dpe~h~kl~G~~~a~~ILe~L~~L~e-~~~v~~~ivlIPGi 179 (404)
T TIGR03278 131 EVSFTVFATDPELRREWMKDPTPEASLQCLRRFCE-SCEVHAASVIIPGV 179 (404)
T ss_pred EEEEecccCCHHHHHHHhCCCCHHHHHHHHHHHHh-cCCEEEEEEEeCCc
Confidence 4444444433210 0 122333334 45666666666554
No 273
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=21.63 E-value=6.9e+02 Score=23.58 Aligned_cols=151 Identities=10% Similarity=-0.004 Sum_probs=84.4
Q ss_pred CHHHHHHHHHHHHHcCCCccccccccCCCcHHHH--HHHHHhcCCCCCeEEEeccCcCCCCCCccccCCChHHHHHHHHH
Q 019203 39 SEEDGITMIKHAFSKGITFFDTADVYGQNANEVL--LGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEA 116 (344)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~sE~~--lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (344)
+.++..+.++.+.+.|++.|=.- .++...-++. .=+++++.-.+++.|.--.. ..++.+...+ +-+
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik-~~~~~~~~~di~~i~~vR~~~G~~~~l~vDan----------~~~~~~~A~~-~~~ 210 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLH-PWGPGVVRRDLKACLAVREAVGPDMRLMHDGA----------HWYSRADALR-LGR 210 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe-cCCchhHHHHHHHHHHHHHHhCCCCeEEEECC----------CCcCHHHHHH-HHH
Confidence 55667778888889999987652 1221101111 11233331123443333221 1244443322 222
Q ss_pred HHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEEec--CCCC-HHHHHHHhhcCCcceeecccccccc-ch
Q 019203 117 SLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGL--SEAS-PGTIRRAHAVHPITAVQMEWSLWTR-DI 192 (344)
Q Consensus 117 sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~iGv--s~~~-~~~l~~~~~~~~~~~~q~~~n~l~~-~~ 192 (344)
.|+.+ ++.++-.|-. ..+ ++.+.+|+++-.+. |.. +-++ ...+.++++...++++|+..+..-. ..
T Consensus 211 ~l~~~-----~l~~iEeP~~---~~d-~~~~~~l~~~~~ip-Ia~~E~~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~ 280 (368)
T cd03329 211 ALEEL-----GFFWYEDPLR---EAS-ISSYRWLAEKLDIP-ILGTEHSRGALESRADWVLAGATDFLRADVNLVGGITG 280 (368)
T ss_pred Hhhhc-----CCCeEeCCCC---chh-HHHHHHHHhcCCCC-EEccCcccCcHHHHHHHHHhCCCCEEecCccccCCHHH
Confidence 34444 3444444432 222 46677888876555 333 3356 8888899888889999998776432 11
Q ss_pred HhhHHHHHHHhCCceeecc
Q 019203 193 EEEIIPLCRELGIGIVPYS 211 (344)
Q Consensus 193 ~~~l~~~~~~~gi~v~a~s 211 (344)
...+...|+.+||.++..+
T Consensus 281 ~~~ia~~a~~~gi~~~~h~ 299 (368)
T cd03329 281 AMKTAHLAEAFGLDVELHG 299 (368)
T ss_pred HHHHHHHHHHcCCEEEEEC
Confidence 2679999999999997654
No 274
>PRK00915 2-isopropylmalate synthase; Validated
Probab=21.59 E-value=3.5e+02 Score=27.13 Aligned_cols=98 Identities=19% Similarity=0.210 Sum_probs=0.0
Q ss_pred cCCChHHHHHHHHHHHhhcCCCceeEEE-ecCCCCCCCHHHHHHHHHHHHHcCc-ccEEecCCCCHHHHHHHhhc-----
Q 019203 103 VKGAPDYVRSCCEASLKRLDVDYIDLYY-QHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPGTIRRAHAV----- 175 (344)
Q Consensus 103 ~~~~~~~i~~~~~~sL~~Lg~d~iDl~~-lh~~~~~~~~~e~~~~L~~l~~~G~-ir~iGvs~~~~~~l~~~~~~----- 175 (344)
..++.+...+-++. |.++|+++|.+-+ ..++.+ ++.++.+.+.++ .+..+++......++.+.+.
T Consensus 21 ~~~s~e~K~~ia~~-L~~~Gv~~IE~G~p~~s~~d-------~~~v~~i~~~~~~~~i~a~~r~~~~did~a~~a~~~~~ 92 (513)
T PRK00915 21 ASLTVEEKLQIAKQ-LERLGVDVIEAGFPASSPGD-------FEAVKRIARTVKNSTVCGLARAVKKDIDAAAEALKPAE 92 (513)
T ss_pred CCCCHHHHHHHHHH-HHHcCCCEEEEcCCCCChHH-------HHHHHHHHhhCCCCEEEEEccCCHHHHHHHHHHhhcCC
Q ss_pred -------CCcceeeccccccccchH-----hhHHHHHHHhCCcee
Q 019203 176 -------HPITAVQMEWSLWTRDIE-----EEIIPLCRELGIGIV 208 (344)
Q Consensus 176 -------~~~~~~q~~~n~l~~~~~-----~~l~~~~~~~gi~v~ 208 (344)
.+.+-.++.+++-....+ .+.+++|+++|..|.
T Consensus 93 ~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~ 137 (513)
T PRK00915 93 APRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVE 137 (513)
T ss_pred CCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE
No 275
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=21.59 E-value=2.3e+02 Score=28.33 Aligned_cols=117 Identities=21% Similarity=0.249 Sum_probs=68.1
Q ss_pred HHHHHHHHcCCCccc--cccccC---C-----CcHHHHHHHHHhc---CCCCCeEEEeccCcCCCCCC---------ccc
Q 019203 45 TMIKHAFSKGITFFD--TADVYG---Q-----NANEVLLGKALKQ---LPREKIQVATKFGIAGIGVA---------GVI 102 (344)
Q Consensus 45 ~~l~~A~~~Gin~~D--ta~~Yg---~-----g~sE~~lg~~l~~---~~r~~~~i~tK~~~~~~~~~---------~~~ 102 (344)
+-++...+.|+..+= ||-+|- . |--|.++.-+-+. ..+.++|+++=+|-.....+ ...
T Consensus 106 e~f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~~g~~L~Gk~~lTaGLGGMgGAQplA~~m~g~v~l~ 185 (546)
T PF01175_consen 106 EHFERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYETFLNAARKHFGGDLAGKLFLTAGLGGMGGAQPLAATMAGGVGLI 185 (546)
T ss_dssp HHHHHHHHTT---B-TTTTTTT---TTHHHHHHHHHHHHHHHHHHSTTS-TT-EEEEE--STTCCHHHHHHHHTT-EEEE
T ss_pred HHHHHHHhccchhhccccccceEEEcccceeehhhHHHHHHHHHhcCCCCcceEEEEecccccccchHHHHHhcCceEEE
Confidence 456667778887664 555542 1 3344444333221 35788999999876543210 111
Q ss_pred cCCChHHHHHHHHHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhc
Q 019203 103 VKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV 175 (344)
Q Consensus 103 ~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 175 (344)
...+++.| -+|+.+.|+|.+. .+++|+++..++.+++|+..+||+-.--.+.++++.+.
T Consensus 186 vEvd~~ri-------~kR~~~g~ld~~~-------~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~ 244 (546)
T PF01175_consen 186 VEVDPSRI-------EKRLEQGYLDEVT-------DDLDEALARAKEARAKKEPLSIGLLGNAADLWEELVER 244 (546)
T ss_dssp EES-HHHH-------HHHHHTTSSSEEE-------SSHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHT
T ss_pred EEECHHHH-------HHHHhCCCeeEEc-------CCHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHc
Confidence 23444444 4566678888764 57899999999999999999999988777778887776
No 276
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=21.50 E-value=62 Score=22.57 Aligned_cols=39 Identities=23% Similarity=0.217 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHHHHcCCCccccccccCCCcHHHHHHHHHhc
Q 019203 39 SEEDGITMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ 79 (344)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~sE~~lg~~l~~ 79 (344)
+.+.-.++|..++..|.+.-+.|..||- +...|..|++.
T Consensus 8 s~e~K~~~v~~~~~~g~sv~~va~~~gi--~~~~l~~W~~~ 46 (76)
T PF01527_consen 8 SPEFKLQAVREYLESGESVSEVAREYGI--SPSTLYNWRKQ 46 (76)
T ss_dssp -HHHHHHHHHHHHHHHCHHHHHHHHHTS---HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCceEeeeccccc--ccccccHHHHH
Confidence 6778889999999999999999999998 99999999986
No 277
>cd08590 PI-PLCc_Rv2075c_like Catalytic domain of uncharacterized Mycobacterium tuberculosis Rv2075c-like proteins. This subfamily corresponds to the catalytic domain present in uncharacterized Mycobacterium tuberculosis Rv2075c and its homologs. Members in this family are more closely related to the Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1(SaPLC1)-like proteins rather than the typical bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). In contrast, SaPLC1-like proteins have two Ca2+-chelating amino acid substitutions which convert them to metal-dependent bacterial PI-PLC. Rv2075c and its homologs have the same amino acid substitutions as well, which might suggest they have metal-dependent PI-PLC activity.
Probab=21.37 E-value=3.3e+02 Score=24.72 Aligned_cols=18 Identities=17% Similarity=0.276 Sum_probs=13.7
Q ss_pred HHHHHHHHcCCCcccccc
Q 019203 45 TMIKHAFSKGITFFDTAD 62 (344)
Q Consensus 45 ~~l~~A~~~Gin~~Dta~ 62 (344)
--|...++.|||+||---
T Consensus 45 ~sI~~QL~~GvR~LdLdv 62 (267)
T cd08590 45 LSITDQLDLGARFLELDV 62 (267)
T ss_pred cCHHHHHhhCCcEEEEee
Confidence 356678899999999543
No 278
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=21.31 E-value=7.8e+02 Score=24.11 Aligned_cols=112 Identities=14% Similarity=0.060 Sum_probs=69.3
Q ss_pred cCCChHHHHHHHHHHHhhcCCCceeEEEecCCCC-CCCHHHHHHHHHHHHHcCcccEEecCCC---CHHHHHHHhhcCCc
Q 019203 103 VKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDT-SVPIEETIGEMKKLVEEGKIKYIGLSEA---SPGTIRRAHAVHPI 178 (344)
Q Consensus 103 ~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~-~~~~~e~~~~L~~l~~~G~ir~iGvs~~---~~~~l~~~~~~~~~ 178 (344)
..++++.+.+.+++....++ .++.+-+-.|.+ ....+.+++.+..++++..=..+.+++- .++.++++.+. .+
T Consensus 58 ~~Ltpee~~~~i~~v~~~~~--~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i~i~lsTNG~~l~e~i~~L~~~-gv 134 (442)
T TIGR01290 58 ELLTPEQALRKARQVAAEIP--QLSVVGIAGPGDPLANIGKTFQTLELVARQLPDVKLCLSTNGLMLPEHVDRLVDL-GV 134 (442)
T ss_pred ccCCHHHHHHHHHHHHHhcC--CCCEEEEecCCCcccCccccHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHC-CC
Confidence 34789999999888877662 345666667544 3445678889999998732125676653 25667666554 35
Q ss_pred ceeeccccccccchHh---------------------------hHHHHHHHhCCceeecccCcccc
Q 019203 179 TAVQMEWSLWTRDIEE---------------------------EIIPLCRELGIGIVPYSPLGRGF 217 (344)
Q Consensus 179 ~~~q~~~n~l~~~~~~---------------------------~l~~~~~~~gi~v~a~spl~~G~ 217 (344)
+.+.+.++-.++.... +-++.+.+.|+.+....++--|+
T Consensus 135 d~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~~v~v~~vlIpGi 200 (442)
T TIGR01290 135 GHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGILVKVNSVLIPGI 200 (442)
T ss_pred CeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCCeEEEEEEeeCCc
Confidence 6666666655432211 22444666777776666665443
No 279
>PF10171 DUF2366: Uncharacterised conserved protein (DUF2366); InterPro: IPR019322 This is a set of proteins conserved from nematodes to humans. The function is not known.
Probab=21.31 E-value=1.6e+02 Score=24.84 Aligned_cols=49 Identities=16% Similarity=0.326 Sum_probs=36.3
Q ss_pred HHHHHHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEEecC
Q 019203 111 RSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS 162 (344)
Q Consensus 111 ~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~iGvs 162 (344)
+.+++++|..-. -++++|+........++-+..|..+..+|++|++-+.
T Consensus 66 e~~f~~~L~e~s---n~l~lv~~~~rNp~S~~hvq~l~~l~nqg~Lr~~nLG 114 (173)
T PF10171_consen 66 EQSFEDALLEAS---NDLLLVSPAIRNPTSDKHVQRLMRLRNQGRLRYLNLG 114 (173)
T ss_pred HHHHHHHHHHHh---CceeccChhhcCchHHHHHHHHHHHhcCCceEEeeee
Confidence 344455555543 5788888776666678889999999999999987654
No 280
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=21.30 E-value=2.3e+02 Score=21.67 Aligned_cols=53 Identities=17% Similarity=0.096 Sum_probs=31.7
Q ss_pred cCCCCHHHHHHHhhcCCcceeeccccccccchHhhHHHHHHHhCCceeecccC
Q 019203 161 LSEASPGTIRRAHAVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPL 213 (344)
Q Consensus 161 vs~~~~~~l~~~~~~~~~~~~q~~~n~l~~~~~~~l~~~~~~~gi~v~a~spl 213 (344)
.+..+.+.+..+....+++++-+--..-.+....++.++++++||++..+..-
T Consensus 36 ~~~l~~~~l~~~~~~~~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T~ 88 (109)
T cd00248 36 LSDLDPEALLPLLAEDRPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMSTG 88 (109)
T ss_pred cccCCHHHHHHHHhhCCCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCcH
Confidence 34456677766665443555544332222223357889999999998876443
No 281
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=21.28 E-value=2.6e+02 Score=21.74 Aligned_cols=41 Identities=22% Similarity=0.210 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHHHHcCCCccccccccCCCcHHHHHHHHHhcC
Q 019203 38 VSEEDGITMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQL 80 (344)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~sE~~lg~~l~~~ 80 (344)
.+.+.-..++..+++.|.+.-+.|..||- ++..|..|.++.
T Consensus 13 ys~EfK~~aV~~~~~~g~sv~evA~e~gI--s~~tl~~W~r~y 53 (121)
T PRK09413 13 RTTQEKIAIVQQSFEPGMTVSLVARQHGV--AASQLFLWRKQY 53 (121)
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCc--CHHHHHHHHHHH
Confidence 36777788999999999999999999998 999999999874
No 282
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=21.28 E-value=2e+02 Score=17.94 Aligned_cols=15 Identities=20% Similarity=0.512 Sum_probs=10.0
Q ss_pred HHHHHHHHcCCCHHH
Q 019203 253 RIGNLAKKYNCTSAQ 267 (344)
Q Consensus 253 ~l~~ia~~~~~s~aq 267 (344)
.+.+||+.+|+|.+.
T Consensus 23 si~~IA~~~gvsr~T 37 (45)
T PF02796_consen 23 SIAEIAKQFGVSRST 37 (45)
T ss_dssp -HHHHHHHTTS-HHH
T ss_pred CHHHHHHHHCcCHHH
Confidence 567788888887765
No 283
>COG3215 PilZ Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=21.27 E-value=2.9e+02 Score=21.21 Aligned_cols=75 Identities=27% Similarity=0.151 Sum_probs=46.1
Q ss_pred HHHHHHHHHcCCCccccccccCCCcHHHHHHHHHhcCCCCCeEEEeccCcCCCCCC-----c--cc--cCCChHHHHHHH
Q 019203 44 ITMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVA-----G--VI--VKGAPDYVRSCC 114 (344)
Q Consensus 44 ~~~l~~A~~~Gin~~Dta~~Yg~g~sE~~lg~~l~~~~r~~~~i~tK~~~~~~~~~-----~--~~--~~~~~~~i~~~~ 114 (344)
....--.+++|.=|+-|-..|.-| .|.++---|-+ ..+++++++|+-+..+... + .+ .+-.-..++.++
T Consensus 23 YsaYMpfl~nGglFVpTnk~y~iG-~evfl~l~lld-~pekl~vagkVaWitP~gt~sr~~GiGv~f~d~e~g~~vr~~I 100 (117)
T COG3215 23 YSAYMPFLENGGLFVPTNKVYSIG-EEVFLLLELLD-FPEKLPVAGKVAWITPVGTQSRPAGIGVQFTDGENGLKVRNQI 100 (117)
T ss_pred HHHHhHHHhcCcEEcccCCccccc-hhhhhhhhhcC-chhhccccceEEEEccCCCCCCCCceeeeccCCCchhhHHHHH
Confidence 444445579999999999999876 56665544442 4578999999865443211 0 00 111223567777
Q ss_pred HHHHhh
Q 019203 115 EASLKR 120 (344)
Q Consensus 115 ~~sL~~ 120 (344)
|.-|-.
T Consensus 101 E~~Lg~ 106 (117)
T COG3215 101 ETLLGG 106 (117)
T ss_pred HHHHHh
Confidence 776643
No 284
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=21.13 E-value=4.6e+02 Score=28.53 Aligned_cols=72 Identities=19% Similarity=0.236 Sum_probs=47.6
Q ss_pred hhhHHHHHHHHHHHHHcCCC--HHHHHHHHHHhCCCC--eEEecCCCCHHHH----HHHHhccCCCCCHHHHHHHHhhCC
Q 019203 245 DRNKSIYFRIGNLAKKYNCT--SAQLALAWVLGQGDD--VVPIPGTTKMKNL----DDNIDSLRIKLTKEDLKEISDAVP 316 (344)
Q Consensus 245 ~~~~~~~~~l~~ia~~~~~s--~aqlal~~~l~~~~v--~~vi~G~~~~~~l----~enl~a~~~~Lt~~~~~~i~~~~~ 316 (344)
...+...+.++.|-+..... ...|.-+|.+.+|.- .+++|...-.+++ ++-+......|++++.++|.+-.+
T Consensus 414 ~~~Lr~~~~~~~Lr~~le~~~~fe~LI~ky~l~N~h~~~v~~~Ps~~~~~~~ekee~e~L~~~~~~l~de~~~ki~~~~~ 493 (978)
T COG1026 414 EDSLRFLDYLQNLREKLEKGPYFEKLIRKYFLDNPHYVTVIVLPSPELEEKLEKEERELLQKRSSELTDEDLEKIIKDSK 493 (978)
T ss_pred hhhhhhHHHHHHHHHhhhcChHHHHHHHHHhhcCCccEEEEEecChHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 44455556666666665555 789999999998843 3344444444444 445566667899999999987653
No 285
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=21.06 E-value=3.1e+02 Score=23.37 Aligned_cols=67 Identities=15% Similarity=0.147 Sum_probs=41.5
Q ss_pred HhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEEecC-CCCHHHHHHHhhcCCcceeecccc
Q 019203 118 LKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPGTIRRAHAVHPITAVQMEWS 186 (344)
Q Consensus 118 L~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~n 186 (344)
..++|+|++-+..-........ .+....|.++... .++.+||- |.+.+.+.++.....++.+|++-+
T Consensus 15 a~~~Gvd~ig~i~~~~s~R~v~-~~~a~~l~~~~~~-~~~~V~v~vn~~~~~i~~ia~~~~~d~Vqlhg~ 82 (203)
T cd00405 15 AAEAGADAIGFIFAPKSPRYVS-PEQAREIVAALPP-FVKRVGVFVNEDLEEILEIAEELGLDVVQLHGD 82 (203)
T ss_pred HHHcCCCEEEEecCCCCCCCCC-HHHHHHHHHhCCC-CCcEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 3468877666543332222222 3444445554443 36778884 667888888888888999999765
No 286
>PRK06740 histidinol-phosphatase; Validated
Probab=21.05 E-value=6.9e+02 Score=23.37 Aligned_cols=49 Identities=12% Similarity=0.097 Sum_probs=31.6
Q ss_pred HHHHHHHhhcCCCceeEEEecCCCCC-----C--------CH----HHHHHHHHHHHHcCcccEEec
Q 019203 112 SCCEASLKRLDVDYIDLYYQHRVDTS-----V--------PI----EETIGEMKKLVEEGKIKYIGL 161 (344)
Q Consensus 112 ~~~~~sL~~Lg~d~iDl~~lh~~~~~-----~--------~~----~e~~~~L~~l~~~G~ir~iGv 161 (344)
..++..|.....||+ +.-+|..+.. . .. +.-.+.+.++.++|.+..||=
T Consensus 156 ~~~~~~l~~~~~Dyv-IgSVH~i~g~~~~~~~~~~~~~~~~~~~~~~~Yf~~~~~~i~~~~fdvIgH 221 (331)
T PRK06740 156 QELQSLLALGDFDYV-IGSVHFLNGWGFDNPDTKEYFEEHDLYALYDTFFKTVECAIRSELFDIIAH 221 (331)
T ss_pred HHHHHHHhcCCCCEE-EEeeeEeCCcCCCCccHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCEeeC
Confidence 345566777778887 8888975411 0 11 224567888888888776664
No 287
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=20.97 E-value=4.1e+02 Score=20.73 Aligned_cols=63 Identities=13% Similarity=0.221 Sum_probs=39.9
Q ss_pred CCCCeEEEeccCcCCCCCCccccCCChHHHHHHHHHHHhhcC--CCceeEEEecCCCCC-CCHHHHHHHHHHHHH
Q 019203 81 PREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLD--VDYIDLYYQHRVDTS-VPIEETIGEMKKLVE 152 (344)
Q Consensus 81 ~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg--~d~iDl~~lh~~~~~-~~~~e~~~~L~~l~~ 152 (344)
+|=-+.|+-|++.. ......|++.+.++..... +.-.|++++..+... .+..++.+.|..|.+
T Consensus 44 ~R~G~~VsKK~~~~---------AV~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~~~~~~~~l~~~l~~ll~ 109 (120)
T PRK04390 44 PRLGLVVGKKTAKR---------AVERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKFDRATAKQAVAELAQLMA 109 (120)
T ss_pred ceEEEEEecccCcc---------hhhhhHHHHHHHHHHHhccccCCCceEEEEeCCCcccCCHHHHHHHHHHHHH
Confidence 44456666664321 2457778888888876544 235699999998654 355666666666554
No 288
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=20.90 E-value=1.2e+03 Score=26.28 Aligned_cols=168 Identities=14% Similarity=0.068 Sum_probs=88.7
Q ss_pred CHHHHHHHHHHHHHcC-CCccccccccCCCcHHHHHHHHHhc-CCCC--C---eEEEeccCcCCCC-C------C-ccc-
Q 019203 39 SEEDGITMIKHAFSKG-ITFFDTADVYGQNANEVLLGKALKQ-LPRE--K---IQVATKFGIAGIG-V------A-GVI- 102 (344)
Q Consensus 39 ~~~~~~~~l~~A~~~G-in~~Dta~~Yg~g~sE~~lg~~l~~-~~r~--~---~~i~tK~~~~~~~-~------~-~~~- 102 (344)
++++..+.+...++.| +|.+=-|---+. ..=+.|.++++. .+|. . -.++|-.-...-. + + ...
T Consensus 290 tPe~~a~~~~~~~~~G~v~IIGGCCGTtP-eHI~ala~~l~~~~p~~~~~~~~~~~~S~~~~~~~~~~~~~~~IGER~N~ 368 (1229)
T PRK09490 290 TPEEMAAQIGEFAESGFLNIVGGCCGTTP-EHIAAIAEAVAGLPPRKLPEIPVACRLSGLEPLNIDDDSLFVNVGERTNV 368 (1229)
T ss_pred CHHHHHHHHHHHHHcCCCCEEEecCCCCH-HHHHHHHHHHhcCCCCCCCCcCcceeeecceEEeecCCCcccccccccch
Confidence 5666777788888888 788764433332 123455666654 2222 1 1122211111000 0 0 000
Q ss_pred ----------cCCChHHHHHHHHHHHhhcCCCceeEEEecCCCCC-CCHHHHHHHHHHHHHcC-cc--cEEecCCCCHHH
Q 019203 103 ----------VKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS-VPIEETIGEMKKLVEEG-KI--KYIGLSEASPGT 168 (344)
Q Consensus 103 ----------~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~-~~~~e~~~~L~~l~~~G-~i--r~iGvs~~~~~~ 168 (344)
...+.+.+.+..++. ..-|.+.||+- ++.. .+-++.+..+..+++.- .+ --|-+-+..++.
T Consensus 369 ~G~k~~~~~i~~~d~~~al~~A~~q-ve~GA~iIDVn----~g~~~id~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~V 443 (1229)
T PRK09490 369 TGSAKFARLIKEEDYDEALDVARQQ-VENGAQIIDIN----MDEGMLDSEAAMVRFLNLIASEPDIARVPIMIDSSKWEV 443 (1229)
T ss_pred hccHHHHHHHHcCCHHHHHHHHHHH-HHCCCCEEEEC----CCCCCCCHHHHHHHHHHHHHhhhccCCceEEEeCCcHHH
Confidence 112333343433333 35688999995 3322 34445555544444421 11 236667888999
Q ss_pred HHHHhhcCCcceeeccccccccch-HhhHHHHHHHhCCceeeccc
Q 019203 169 IRRAHAVHPITAVQMEWSLWTRDI-EEEIIPLCRELGIGIVPYSP 212 (344)
Q Consensus 169 l~~~~~~~~~~~~q~~~n~l~~~~-~~~l~~~~~~~gi~v~a~sp 212 (344)
++.+++..+=..+.+..|....+. ...+++.|++.|..|+++.-
T Consensus 444 iEaaLk~~~G~~IINSIs~~~~~~~~~~~~~l~~kyga~vV~m~~ 488 (1229)
T PRK09490 444 IEAGLKCIQGKGIVNSISLKEGEEKFIEHARLVRRYGAAVVVMAF 488 (1229)
T ss_pred HHHHHhhcCCCCEEEeCCCCCCCccHHHHHHHHHHhCCCEEEEec
Confidence 999998733233445556643211 13689999999999998753
No 289
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=20.89 E-value=6.9e+02 Score=23.29 Aligned_cols=94 Identities=13% Similarity=0.068 Sum_probs=46.0
Q ss_pred CCCeEEEeccCcCCCCCCccccCCChHHHHHHHHHHHhhcCCCceeEEEecCCCCCCC-----------H-H-HHHHHHH
Q 019203 82 REKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVP-----------I-E-ETIGEMK 148 (344)
Q Consensus 82 r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~-----------~-~-e~~~~L~ 148 (344)
.+++.|..|+...... ...++.+... .+=+.|+..|+|+|. +|.-..... . . -.++...
T Consensus 214 G~d~~v~vris~~~~~----~~g~~~eea~-~ia~~Le~~Gvd~ie---v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (338)
T cd04733 214 GPGFPVGIKLNSADFQ----RGGFTEEDAL-EVVEALEEAGVDLVE---LSGGTYESPAMAGAKKESTIAREAYFLEFAE 285 (338)
T ss_pred CCCCeEEEEEcHHHcC----CCCCCHHHHH-HHHHHHHHcCCCEEE---ecCCCCCCccccccccCCccccchhhHHHHH
Confidence 3567788887532110 1123444432 344456777765544 332211000 0 1 1134444
Q ss_pred HHHHcCcccEEecCCC-CHHHHHHHhhcCCcceeec
Q 019203 149 KLVEEGKIKYIGLSEA-SPGTIRRAHAVHPITAVQM 183 (344)
Q Consensus 149 ~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q~ 183 (344)
++++.=.+--++..+. +++.++++++....|.+.+
T Consensus 286 ~ik~~v~iPVi~~G~i~t~~~a~~~l~~g~aD~V~l 321 (338)
T cd04733 286 KIRKVTKTPLMVTGGFRTRAAMEQALASGAVDGIGL 321 (338)
T ss_pred HHHHHcCCCEEEeCCCCCHHHHHHHHHcCCCCeeee
Confidence 5555444555555554 5677777777666665544
No 290
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=20.87 E-value=94 Score=29.37 Aligned_cols=35 Identities=26% Similarity=0.405 Sum_probs=27.0
Q ss_pred hhHHHHHHHhCCceeecccCcccccCCCCCCCCCC
Q 019203 194 EEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVP 228 (344)
Q Consensus 194 ~~l~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~ 228 (344)
..+.+.++++||+++---||+..+......++..|
T Consensus 291 ~~Ir~iA~e~~VPiven~pLAR~Ly~~~evg~~IP 325 (342)
T TIGR01404 291 LAVRAYAEEAGIPVVRDIPLARQLYRTARVGQYIP 325 (342)
T ss_pred HHHHHHHHHcCCCEeeCHHHHHHHHHcCCCCCcCC
Confidence 67999999999999999999988864333333344
No 291
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=20.84 E-value=5.9e+02 Score=22.47 Aligned_cols=22 Identities=14% Similarity=0.209 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHHHHcCCCcccc
Q 019203 39 SEEDGITMIKHAFSKGITFFDT 60 (344)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dt 60 (344)
-+|.....++.|++.|+..|++
T Consensus 20 ~pENT~~Af~~A~~~G~d~vE~ 41 (249)
T PRK09454 20 APENTLAAIDVGARYGHRMIEF 41 (249)
T ss_pred CChHHHHHHHHHHHcCCCEEEE
Confidence 5688899999999999998875
No 292
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=20.73 E-value=3e+02 Score=23.70 Aligned_cols=87 Identities=20% Similarity=0.206 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEEecCCC-CHHHHHHHhhcCCcceeeccc
Q 019203 107 PDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA-SPGTIRRAHAVHPITAVQMEW 185 (344)
Q Consensus 107 ~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q~~~ 185 (344)
.+...+. -+.|-.-|+..+-+=+ -. ....+.++ .++++--=-.||..+. +.++++.+++..- +++..
T Consensus 19 ~~~a~~~-~~al~~gGi~~iEiT~---~t--~~a~~~I~---~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA-~FivS-- 86 (196)
T PF01081_consen 19 PEDAVPI-AEALIEGGIRAIEITL---RT--PNALEAIE---ALRKEFPDLLVGAGTVLTAEQAEAAIAAGA-QFIVS-- 86 (196)
T ss_dssp GGGHHHH-HHHHHHTT--EEEEET---TS--TTHHHHHH---HHHHHHTTSEEEEES--SHHHHHHHHHHT--SEEEE--
T ss_pred HHHHHHH-HHHHHHCCCCEEEEec---CC--ccHHHHHH---HHHHHCCCCeeEEEeccCHHHHHHHHHcCC-CEEEC--
Confidence 4444333 3456666755444432 11 12234444 3443322246888765 7888888877642 22222
Q ss_pred cccccchHhhHHHHHHHhCCceee
Q 019203 186 SLWTRDIEEEIIPLCRELGIGIVP 209 (344)
Q Consensus 186 n~l~~~~~~~l~~~~~~~gi~v~a 209 (344)
+ ....+++++|+++||.++.
T Consensus 87 -P---~~~~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 87 -P---GFDPEVIEYAREYGIPYIP 106 (196)
T ss_dssp -S---S--HHHHHHHHHHTSEEEE
T ss_pred -C---CCCHHHHHHHHHcCCcccC
Confidence 2 2236899999999999987
No 293
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=20.71 E-value=97 Score=29.49 Aligned_cols=26 Identities=27% Similarity=0.516 Sum_probs=23.5
Q ss_pred hhHHHHHHHhCCceeecccCcccccC
Q 019203 194 EEIIPLCRELGIGIVPYSPLGRGFFG 219 (344)
Q Consensus 194 ~~l~~~~~~~gi~v~a~spl~~G~L~ 219 (344)
..+.+.++++||+++-.-||+..+..
T Consensus 301 ~~Ir~~A~e~~VPiven~pLARaLy~ 326 (358)
T PRK13109 301 LKIREIAEENGIPVIEDKPLARSLYD 326 (358)
T ss_pred HHHHHHHHHcCCCEEeCHHHHHHHHH
Confidence 67899999999999999999988764
No 294
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.66 E-value=5.6e+02 Score=24.24 Aligned_cols=80 Identities=9% Similarity=0.029 Sum_probs=51.3
Q ss_pred CCHHHHHHHHHHHHHcCc----ccEEecC--CCCHHHHHHHhhc---CCcceeeccccccccc-----hH---hhHHHHH
Q 019203 138 VPIEETIGEMKKLVEEGK----IKYIGLS--EASPGTIRRAHAV---HPITAVQMEWSLWTRD-----IE---EEIIPLC 200 (344)
Q Consensus 138 ~~~~e~~~~L~~l~~~G~----ir~iGvs--~~~~~~l~~~~~~---~~~~~~q~~~n~l~~~-----~~---~~l~~~~ 200 (344)
.+++++.+++.++.++-. +-++=+. |.+++++.++.+. .++.++.++||..... .. ....+..
T Consensus 223 ~~l~el~~a~~~~~~~~grri~~EyvLl~GVNDs~e~a~~L~~~l~~~~~~vNLIPyN~v~g~~~~rp~~~~i~~f~~~L 302 (344)
T PRK14464 223 IAPEELVELGEAYARATGYPIQYQWTLLEGVNDSDEEMDGIVRLLKGKYAVMNLIPYNSVDGDAYRRPSGERIVAMARYL 302 (344)
T ss_pred CCHHHHHHHHHHHHHHHCCEEEEEEEEeCCCCCCHHHHHHHHHHHhccccccceecCCccCCCCccCCCHHHHHHHHHHH
Confidence 367888888887765432 1233222 4577776665554 4567888999975431 11 3566667
Q ss_pred HHhCCceeecccCcccc
Q 019203 201 RELGIGIVPYSPLGRGF 217 (344)
Q Consensus 201 ~~~gi~v~a~spl~~G~ 217 (344)
+++||.+......+.-+
T Consensus 303 ~~~gi~~tiR~~~G~di 319 (344)
T PRK14464 303 HRRGVLTKVRNSAGQDV 319 (344)
T ss_pred HHCCceEEEECCCCCch
Confidence 78899999988876444
No 295
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=20.64 E-value=4e+02 Score=23.25 Aligned_cols=88 Identities=19% Similarity=0.159 Sum_probs=53.0
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcCc---ccEEecCCC-CHHHHHHHhhcCCccee
Q 019203 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK---IKYIGLSEA-SPGTIRRAHAVHPITAV 181 (344)
Q Consensus 106 ~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~---ir~iGvs~~-~~~~l~~~~~~~~~~~~ 181 (344)
+.+..... -+.|..-|+.-+-+=+= .....+.+++++++-. =-.||..+. +.++++.+++..- +++
T Consensus 23 ~~~~a~~~-~~al~~~Gi~~iEit~~--------~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA-~Fi 92 (213)
T PRK06552 23 SKEEALKI-SLAVIKGGIKAIEVTYT--------NPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGA-QFI 92 (213)
T ss_pred CHHHHHHH-HHHHHHCCCCEEEEECC--------CccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCC-CEE
Confidence 44444443 34666777665555431 1234556666655421 136888765 7888888877643 222
Q ss_pred eccccccccchHhhHHHHHHHhCCceee
Q 019203 182 QMEWSLWTRDIEEEIIPLCRELGIGIVP 209 (344)
Q Consensus 182 q~~~n~l~~~~~~~l~~~~~~~gi~v~a 209 (344)
. ++. ...+++++|+++||.++.
T Consensus 93 v---sP~---~~~~v~~~~~~~~i~~iP 114 (213)
T PRK06552 93 V---SPS---FNRETAKICNLYQIPYLP 114 (213)
T ss_pred E---CCC---CCHHHHHHHHHcCCCEEC
Confidence 2 232 236899999999999887
No 296
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=20.62 E-value=98 Score=29.34 Aligned_cols=26 Identities=35% Similarity=0.557 Sum_probs=23.3
Q ss_pred hhHHHHHHHhCCceeecccCcccccC
Q 019203 194 EEIIPLCRELGIGIVPYSPLGRGFFG 219 (344)
Q Consensus 194 ~~l~~~~~~~gi~v~a~spl~~G~L~ 219 (344)
..+.+.|+++||+++---||+..+..
T Consensus 292 ~~Ir~iA~e~~VPiven~pLARaLY~ 317 (349)
T PRK12721 292 LHIVKLAERNGIPVVENIPLARALFK 317 (349)
T ss_pred HHHHHHHHHcCCCEEeCHHHHHHHHH
Confidence 58999999999999999999987764
No 297
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=20.59 E-value=4.4e+02 Score=22.60 Aligned_cols=84 Identities=12% Similarity=0.076 Sum_probs=50.9
Q ss_pred eeEEEecCCCCCCCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhcCCcceeecccc-ccccchHhhHHHHHHHhC
Q 019203 126 IDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAVQMEWS-LWTRDIEEEIIPLCRELG 204 (344)
Q Consensus 126 iDl~~lh~~~~~~~~~e~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n-~l~~~~~~~l~~~~~~~g 204 (344)
..+..+.+.. .-+...+|.+.|- ..+-..-.+.+.|.++++.....++.+... .........+++.|++.|
T Consensus 23 ~~V~~l~R~~-------~~~~~~~l~~~g~-~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~ag 94 (233)
T PF05368_consen 23 FSVRALVRDP-------SSDRAQQLQALGA-EVVEADYDDPESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAG 94 (233)
T ss_dssp GCEEEEESSS-------HHHHHHHHHHTTT-EEEES-TT-HHHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT
T ss_pred CCcEEEEecc-------chhhhhhhhcccc-eEeecccCCHHHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccc
Confidence 5677777654 1223455666666 455555557888888888655444444432 211222367999999999
Q ss_pred CceeecccCcccc
Q 019203 205 IGIVPYSPLGRGF 217 (344)
Q Consensus 205 i~v~a~spl~~G~ 217 (344)
|..+.+|.++...
T Consensus 95 Vk~~v~ss~~~~~ 107 (233)
T PF05368_consen 95 VKHFVPSSFGADY 107 (233)
T ss_dssp -SEEEESEESSGT
T ss_pred cceEEEEEecccc
Confidence 9999998887543
No 298
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=20.58 E-value=1.4e+02 Score=25.57 Aligned_cols=71 Identities=17% Similarity=0.050 Sum_probs=43.8
Q ss_pred HHHHHHHhCCceee-cccCcccccCCC-CCCCCCCCCcccccccCCcCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 019203 196 IIPLCRELGIGIVP-YSPLGRGFFGGK-AVVENVPADSFLHFLPRFKGENLDRNKSIYFRIGNLAKKYNCTSAQLALAWV 273 (344)
Q Consensus 196 l~~~~~~~gi~v~a-~spl~~G~L~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~aqlal~~~ 273 (344)
--+..+++||.++. +-.-++|...+- ......++. .....+.....+..+-+.++++++++.+.|+..+
T Consensus 124 ~~~~L~~~Gi~~~Pd~~~NaGGv~~~~~e~~~~~~~~---------~~~~~~~~~~~~~~v~~~a~~~~~~~~~aA~~~a 194 (200)
T cd01075 124 HGQMLHERGILYAPDYVVNAGGLINVADELYGGNEAR---------VLAKVEAIYDTLLEIFAQAKQDGITTLEAADRMA 194 (200)
T ss_pred HHHHHHHCCCEEeCceeeeCcCceeehhHHhCCcHHH---------HHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 44556889999988 666676765422 111100000 0012334456667778889999999999998877
Q ss_pred Hh
Q 019203 274 LG 275 (344)
Q Consensus 274 l~ 275 (344)
+.
T Consensus 195 ~~ 196 (200)
T cd01075 195 EE 196 (200)
T ss_pred HH
Confidence 65
No 299
>PF13518 HTH_28: Helix-turn-helix domain
Probab=20.49 E-value=1.2e+02 Score=19.12 Aligned_cols=22 Identities=9% Similarity=0.517 Sum_probs=16.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Q 019203 253 RIGNLAKKYNCTSAQLALAWVLG 275 (344)
Q Consensus 253 ~l~~ia~~~~~s~aqlal~~~l~ 275 (344)
.+.++|+++|+|..++ .+|+-.
T Consensus 14 s~~~~a~~~gis~~tv-~~w~~~ 35 (52)
T PF13518_consen 14 SVREIAREFGISRSTV-YRWIKR 35 (52)
T ss_pred CHHHHHHHHCCCHhHH-HHHHHH
Confidence 4677899999988775 677654
No 300
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=20.29 E-value=1.1e+03 Score=25.33 Aligned_cols=95 Identities=14% Similarity=0.083 Sum_probs=52.6
Q ss_pred ChHHHHHHHHHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHc--CcccEEecCCCCHHHHHHHhhcCCcceeec
Q 019203 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEE--GKIKYIGLSEASPGTIRRAHAVHPITAVQM 183 (344)
Q Consensus 106 ~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~--G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~ 183 (344)
..+.|++.++......-....-+|+|+..+... .+.+++|.+..++ ..+++|.+++.....+..+ .--+.++
T Consensus 100 gVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT--~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TI----rSRCq~f 173 (830)
T PRK07003 100 GVDEMAALLERAVYAPVDARFKVYMIDEVHMLT--NHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTV----LSRCLQF 173 (830)
T ss_pred cHHHHHHHHHHHHhccccCCceEEEEeChhhCC--HHHHHHHHHHHHhcCCCeEEEEEECChhhccchh----hhheEEE
Confidence 455566655544322222334678888776553 3556666666655 5899999998533322221 2234667
Q ss_pred cccccccchH-hhHHHHHHHhCCc
Q 019203 184 EWSLWTRDIE-EEIIPLCRELGIG 206 (344)
Q Consensus 184 ~~n~l~~~~~-~~l~~~~~~~gi~ 206 (344)
.|..+....- .-+...|.+.||.
T Consensus 174 ~Fk~Ls~eeIv~~L~~Il~~EgI~ 197 (830)
T PRK07003 174 NLKQMPAGHIVSHLERILGEERIA 197 (830)
T ss_pred ecCCcCHHHHHHHHHHHHHHcCCC
Confidence 7777655322 3344456666665
No 301
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=20.18 E-value=2.6e+02 Score=27.53 Aligned_cols=101 Identities=16% Similarity=0.126 Sum_probs=67.2
Q ss_pred CcHHHHHHHHHhc---CCCCCeEEEeccCcCCCCCCc---------cccCCChHHHHHHHHHHHhhcCCCceeEEEecCC
Q 019203 67 NANEVLLGKALKQ---LPREKIQVATKFGIAGIGVAG---------VIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRV 134 (344)
Q Consensus 67 g~sE~~lg~~l~~---~~r~~~~i~tK~~~~~~~~~~---------~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~ 134 (344)
|--|.++.-+-+. ..+.++++++-+|-.....+- .....+. .+.-+||.+.|+|..
T Consensus 148 GTyeT~~~~~r~h~~gdL~Gk~~lTaGLGGMgGAQplA~~ma~~v~i~vevd~-------srI~~Rl~t~y~d~~----- 215 (561)
T COG2987 148 GTYETFAEAGRQHFGGDLKGKWVLTAGLGGMGGAQPLAATMAGAVCIAVEVDE-------SRIDKRLRTGYLDEI----- 215 (561)
T ss_pred chHHHHHHHHHHhcCCCccceEEEecCCCcccccchHHHHhcCceEEEEEeCH-------HHHHHHHhcchhhhh-----
Confidence 4455555544333 356788898888765432210 0111222 334467778888753
Q ss_pred CCCCCHHHHHHHHHHHHHcCcccEEecCCCCHHHHHHHhhc-CCccee
Q 019203 135 DTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV-HPITAV 181 (344)
Q Consensus 135 ~~~~~~~e~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~ 181 (344)
...++|++...++..+.|+-.+||+-.--.+.+.++++. ..++++
T Consensus 216 --a~~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~v 261 (561)
T COG2987 216 --AETLDEALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLV 261 (561)
T ss_pred --cCCHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCcee
Confidence 357899999999999999999999998777888888776 345554
No 302
>PF09989 DUF2229: CoA enzyme activase uncharacterised domain (DUF2229); InterPro: IPR018709 Proteins containing this domain include various bacterial hypothetical proteins, as well as CoA enzyme activases. The exact function of this domain has not, as yet, been defined.
Probab=20.17 E-value=1.9e+02 Score=25.39 Aligned_cols=32 Identities=16% Similarity=0.249 Sum_probs=25.8
Q ss_pred ceeeccccccccchHhhHHHHHHHhCCceeec
Q 019203 179 TAVQMEWSLWTRDIEEEIIPLCRELGIGIVPY 210 (344)
Q Consensus 179 ~~~q~~~n~l~~~~~~~l~~~~~~~gi~v~a~ 210 (344)
.++=-+||++++....++.+..++.|+.|+..
T Consensus 187 vl~GrpY~~~D~~in~~I~~~l~~~G~~vit~ 218 (221)
T PF09989_consen 187 VLLGRPYNIYDPFINMGIPDKLRSLGVPVITE 218 (221)
T ss_pred EEEcCCCcCCCcccCCchHHHHHHCCCeeeCc
Confidence 33334899999888789999999999998864
No 303
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=20.16 E-value=8.2e+02 Score=23.88 Aligned_cols=103 Identities=16% Similarity=0.270 Sum_probs=68.4
Q ss_pred HHHHHHHHcCCCccccccccCC-CcHHHHHHHHHhcCCCCCeEEEeccCcCCCCCCccccCCChHHHHHHHHHHHhhcCC
Q 019203 45 TMIKHAFSKGITFFDTADVYGQ-NANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDV 123 (344)
Q Consensus 45 ~~l~~A~~~Gin~~Dta~~Yg~-g~sE~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~ 123 (344)
.+|.++++.|- +-..-.||. |.--..|.+.+......++.-.+-+ ..+.+.++..++++.++++.
T Consensus 37 ~~lrr~v~~~~--l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv------------~~gvkdlr~i~e~a~~~~~~ 102 (436)
T COG2256 37 KPLRRAVEAGH--LHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV------------TSGVKDLREIIEEARKNRLL 102 (436)
T ss_pred chHHHHHhcCC--CceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc------------cccHHHHHHHHHHHHHHHhc
Confidence 57788888763 334446765 5556778888876333444322222 24577899999999888875
Q ss_pred CceeEEEe---cCCCCCCCHHHHHHHHHHHHHcCcccEEecCCCCH
Q 019203 124 DYIDLYYQ---HRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASP 166 (344)
Q Consensus 124 d~iDl~~l---h~~~~~~~~~e~~~~L~~l~~~G~ir~iGvs~~~~ 166 (344)
.+=-+++| |+.+. ..-++|.-.+++|.|-.||.++.+|
T Consensus 103 gr~tiLflDEIHRfnK-----~QQD~lLp~vE~G~iilIGATTENP 143 (436)
T COG2256 103 GRRTILFLDEIHRFNK-----AQQDALLPHVENGTIILIGATTENP 143 (436)
T ss_pred CCceEEEEehhhhcCh-----hhhhhhhhhhcCCeEEEEeccCCCC
Confidence 54455554 44433 3457888899999999999987543
No 304
>PRK09389 (R)-citramalate synthase; Provisional
Probab=20.06 E-value=4.5e+02 Score=26.16 Aligned_cols=99 Identities=19% Similarity=0.245 Sum_probs=0.0
Q ss_pred cCCChHHHHHHHHHHHhhcCCCceeEEEecCCCCCCCHHHHHHHHHHHHHcC-cccEEecCCCCHHHHHHHhhc------
Q 019203 103 VKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG-KIKYIGLSEASPGTIRRAHAV------ 175 (344)
Q Consensus 103 ~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~e~~~~L~~l~~~G-~ir~iGvs~~~~~~l~~~~~~------ 175 (344)
..++.+...+-++. |.++|+++|.+-+.-.+..+ ++++..+.+.+ ..+-.+++......++.+.+.
T Consensus 19 ~~~s~e~K~~ia~~-L~~~Gv~~IE~G~p~~~~~d------~e~v~~i~~~~~~~~i~a~~r~~~~di~~a~~~g~~~v~ 91 (488)
T PRK09389 19 VSLTPEEKLEIARK-LDELGVDVIEAGSAITSEGE------REAIKAVTDEGLNAEICSFARAVKVDIDAALECDVDSVH 91 (488)
T ss_pred CCcCHHHHHHHHHH-HHHcCCCEEEEeCCcCCHHH------HHHHHHHHhcCCCcEEEeecccCHHHHHHHHhCCcCEEE
Q ss_pred --CCcceeeccccccccchH-----hhHHHHHHHhCCcee
Q 019203 176 --HPITAVQMEWSLWTRDIE-----EEIIPLCRELGIGIV 208 (344)
Q Consensus 176 --~~~~~~q~~~n~l~~~~~-----~~l~~~~~~~gi~v~ 208 (344)
.+.+-.++.+++-....+ .+.+++++++|+.|.
T Consensus 92 i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~ 131 (488)
T PRK09389 92 LVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVE 131 (488)
T ss_pred EEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEE
No 305
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=20.04 E-value=6.6e+02 Score=23.33 Aligned_cols=24 Identities=21% Similarity=0.090 Sum_probs=19.4
Q ss_pred CCHHHHHHHHHHHHHcCCCccccc
Q 019203 38 VSEEDGITMIKHAFSKGITFFDTA 61 (344)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~Dta 61 (344)
.+.++..+.++.+.+.|++.|-..
T Consensus 72 ls~eei~~~~~~~~~~G~~~i~l~ 95 (340)
T TIGR03699 72 LSVEEILQKIEELVAYGGTQILLQ 95 (340)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEe
Confidence 477888888998889999877654
Done!