Query 019204
Match_columns 344
No_of_seqs 271 out of 1486
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 07:33:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019204.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019204hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1571 Predicted E3 ubiquitin 100.0 1.3E-46 2.8E-51 343.9 10.9 342 1-344 1-355 (355)
2 PF12483 GIDE: E3 Ubiquitin li 100.0 5.2E-31 1.1E-35 224.9 14.7 140 95-234 12-156 (160)
3 KOG4172 Predicted E3 ubiquitin 99.4 4.1E-15 8.9E-20 99.0 -3.4 50 295-344 8-62 (62)
4 KOG4275 Predicted E3 ubiquitin 99.3 3.2E-13 6.9E-18 120.5 1.0 51 294-344 300-350 (350)
5 KOG4265 Predicted E3 ubiquitin 99.3 1.8E-12 3.8E-17 119.8 2.1 52 292-343 288-343 (349)
6 PF13920 zf-C3HC4_3: Zinc fing 99.2 3E-12 6.4E-17 87.3 1.3 45 294-338 2-50 (50)
7 KOG0823 Predicted E3 ubiquitin 98.9 1.1E-09 2.5E-14 95.7 3.5 48 294-342 47-103 (230)
8 KOG0317 Predicted E3 ubiquitin 98.9 6.7E-10 1.5E-14 99.9 2.1 45 294-339 239-287 (293)
9 PLN03208 E3 ubiquitin-protein 98.7 8.1E-09 1.8E-13 88.8 2.8 49 293-342 17-87 (193)
10 KOG1100 Predicted E3 ubiquitin 98.5 5.7E-08 1.2E-12 85.7 2.7 47 296-342 160-206 (207)
11 KOG0320 Predicted E3 ubiquitin 98.5 5.2E-08 1.1E-12 81.8 1.2 47 295-342 132-186 (187)
12 PF13923 zf-C3HC4_2: Zinc fing 98.4 6.9E-08 1.5E-12 62.0 0.6 34 297-331 1-39 (39)
13 PHA02929 N1R/p28-like protein; 98.4 1.3E-07 2.9E-12 84.8 2.1 47 294-341 174-232 (238)
14 KOG2164 Predicted E3 ubiquitin 98.3 1.5E-07 3.3E-12 91.0 1.0 48 294-342 186-244 (513)
15 PF13639 zf-RING_2: Ring finge 98.3 1.8E-07 4E-12 61.7 0.6 36 296-332 2-44 (44)
16 PF14634 zf-RING_5: zinc-RING 98.2 4.5E-07 9.8E-12 59.8 1.4 37 296-333 1-44 (44)
17 KOG4628 Predicted E3 ubiquitin 98.2 1.5E-05 3.3E-10 74.9 11.2 42 295-337 230-279 (348)
18 PHA02926 zinc finger-like prot 98.1 4.8E-07 1E-11 78.8 -0.2 47 293-340 169-234 (242)
19 PF15227 zf-C3HC4_4: zinc fing 98.1 1.1E-06 2.3E-11 57.3 0.9 34 297-331 1-42 (42)
20 COG5574 PEX10 RING-finger-cont 98.1 8.6E-07 1.9E-11 79.1 0.5 42 294-336 215-262 (271)
21 KOG0978 E3 ubiquitin ligase in 98.0 7.9E-07 1.7E-11 90.0 -1.1 47 295-342 644-697 (698)
22 KOG1785 Tyrosine kinase negati 98.0 1.9E-06 4.1E-11 80.7 0.4 47 294-341 369-421 (563)
23 PF00097 zf-C3HC4: Zinc finger 98.0 2.3E-06 5E-11 55.4 0.6 34 297-331 1-41 (41)
24 cd00162 RING RING-finger (Real 97.9 5E-06 1.1E-10 54.2 1.3 39 296-335 1-45 (45)
25 smart00184 RING Ring finger. E 97.8 8.3E-06 1.8E-10 51.3 1.8 34 297-331 1-39 (39)
26 COG5243 HRD1 HRD ubiquitin lig 97.8 2.8E-05 6.1E-10 72.5 5.9 43 292-335 285-344 (491)
27 smart00504 Ubox Modified RING 97.8 9.1E-06 2E-10 57.7 1.4 41 295-336 2-46 (63)
28 TIGR00599 rad18 DNA repair pro 97.8 7.3E-06 1.6E-10 78.9 1.0 44 293-337 25-72 (397)
29 KOG4692 Predicted E3 ubiquitin 97.7 1.4E-05 3E-10 73.9 2.0 44 293-337 421-468 (489)
30 PF13445 zf-RING_UBOX: RING-ty 97.6 1.7E-05 3.8E-10 51.8 0.2 27 297-325 1-31 (43)
31 PF14447 Prok-RING_4: Prokaryo 97.6 3E-05 6.6E-10 52.6 1.4 42 295-337 8-51 (55)
32 COG5540 RING-finger-containing 97.5 4.3E-05 9.2E-10 69.5 1.5 42 294-336 323-372 (374)
33 COG5236 Uncharacterized conser 97.5 8.4E-05 1.8E-09 68.7 3.1 47 292-339 59-111 (493)
34 COG5432 RAD18 RING-finger-cont 97.4 4.9E-05 1.1E-09 68.7 0.6 43 292-335 23-69 (391)
35 KOG0287 Postreplication repair 97.3 5.6E-05 1.2E-09 69.7 0.1 43 294-337 23-69 (442)
36 PF12678 zf-rbx1: RING-H2 zinc 97.3 0.00011 2.5E-09 53.9 1.4 36 296-332 21-73 (73)
37 KOG0802 E3 ubiquitin ligase [P 97.0 0.00084 1.8E-08 68.2 4.9 44 291-335 288-340 (543)
38 KOG2177 Predicted E3 ubiquitin 96.9 0.00021 4.5E-09 66.2 0.2 40 293-333 12-55 (386)
39 PF14835 zf-RING_6: zf-RING of 96.9 0.00037 8E-09 49.0 1.3 40 295-335 8-50 (65)
40 PF04564 U-box: U-box domain; 96.6 0.00096 2.1E-08 48.9 1.5 44 293-337 3-51 (73)
41 KOG0311 Predicted E3 ubiquitin 96.5 0.00021 4.6E-09 66.5 -2.9 44 294-338 43-92 (381)
42 COG5152 Uncharacterized conser 96.4 0.00097 2.1E-08 57.2 0.4 45 292-337 194-242 (259)
43 KOG0828 Predicted E3 ubiquitin 96.3 0.00085 1.8E-08 64.9 -0.5 43 294-337 571-635 (636)
44 KOG1813 Predicted E3 ubiquitin 96.3 0.002 4.3E-08 58.8 1.7 48 290-338 237-288 (313)
45 KOG4159 Predicted E3 ubiquitin 96.1 0.0019 4.1E-08 62.5 0.8 45 292-337 82-130 (398)
46 KOG2879 Predicted E3 ubiquitin 96.1 0.019 4.1E-07 52.0 7.0 47 291-338 236-289 (298)
47 KOG1039 Predicted E3 ubiquitin 95.9 0.0029 6.3E-08 60.0 1.0 46 294-340 161-225 (344)
48 KOG0826 Predicted E3 ubiquitin 95.7 0.035 7.7E-07 51.5 7.1 52 290-342 296-354 (357)
49 KOG3002 Zn finger protein [Gen 95.1 0.0085 1.8E-07 55.9 1.2 42 295-338 49-93 (299)
50 KOG0804 Cytoplasmic Zn-finger 94.8 0.02 4.4E-07 55.2 2.7 39 294-333 175-219 (493)
51 KOG1734 Predicted RING-contain 94.6 0.015 3.2E-07 52.4 1.3 46 291-337 221-282 (328)
52 PF04641 Rtf2: Rtf2 RING-finge 94.0 0.033 7.2E-07 51.2 2.3 46 291-337 110-162 (260)
53 PF12861 zf-Apc11: Anaphase-pr 93.9 0.021 4.6E-07 42.8 0.7 28 308-336 48-82 (85)
54 KOG1001 Helicase-like transcri 93.7 0.021 4.6E-07 59.1 0.5 40 295-336 455-500 (674)
55 KOG1814 Predicted E3 ubiquitin 93.6 0.022 4.7E-07 54.4 0.4 40 294-334 184-238 (445)
56 KOG2932 E3 ubiquitin ligase in 93.3 0.025 5.5E-07 51.9 0.3 45 294-339 90-137 (389)
57 KOG0825 PHD Zn-finger protein 92.7 0.026 5.7E-07 57.8 -0.7 45 295-340 124-175 (1134)
58 KOG0297 TNF receptor-associate 92.6 0.066 1.4E-06 52.2 2.0 47 292-339 19-70 (391)
59 PF14570 zf-RING_4: RING/Ubox 92.5 0.027 5.8E-07 37.5 -0.6 38 297-335 1-47 (48)
60 PF10367 Vps39_2: Vacuolar sor 92.3 0.39 8.4E-06 37.4 5.8 29 294-323 78-108 (109)
61 KOG3039 Uncharacterized conser 92.2 0.074 1.6E-06 47.5 1.6 42 295-337 222-271 (303)
62 KOG1002 Nucleotide excision re 92.1 0.028 6E-07 55.2 -1.3 41 294-335 536-585 (791)
63 PF04710 Pellino: Pellino; In 90.1 0.087 1.9E-06 50.3 0.0 43 294-337 328-402 (416)
64 smart00744 RINGv The RING-vari 89.9 0.12 2.7E-06 34.6 0.6 36 296-332 1-49 (49)
65 KOG1428 Inhibitor of type V ad 89.9 0.12 2.5E-06 56.6 0.7 44 293-337 3485-3545(3738)
66 PF05290 Baculo_IE-1: Baculovi 89.0 0.11 2.3E-06 42.1 -0.2 45 294-339 80-135 (140)
67 COG5219 Uncharacterized conser 88.6 0.12 2.6E-06 54.3 -0.3 41 295-336 1470-1523(1525)
68 KOG2660 Locus-specific chromos 87.7 0.087 1.9E-06 49.1 -1.8 46 294-340 15-65 (331)
69 COG5175 MOT2 Transcriptional r 87.5 0.18 3.8E-06 47.1 0.1 41 295-336 15-64 (480)
70 KOG3842 Adaptor protein Pellin 87.2 0.29 6.4E-06 45.3 1.3 44 293-337 340-415 (429)
71 KOG2113 Predicted RNA binding 86.4 0.57 1.2E-05 43.4 2.7 48 294-341 343-392 (394)
72 COG5222 Uncharacterized conser 84.8 0.31 6.7E-06 44.8 0.2 38 295-333 275-318 (427)
73 PF02318 FYVE_2: FYVE-type zin 84.6 2.2 4.8E-05 34.2 5.1 40 294-334 54-103 (118)
74 COG5220 TFB3 Cdk activating ki 82.9 0.23 4.9E-06 44.2 -1.4 39 294-333 10-61 (314)
75 PF10272 Tmpp129: Putative tra 82.1 0.91 2E-05 43.5 2.2 18 293-310 270-287 (358)
76 PF11789 zf-Nse: Zinc-finger o 81.4 0.64 1.4E-05 32.2 0.7 37 293-330 10-53 (57)
77 PF03854 zf-P11: P-11 zinc fin 81.4 0.5 1.1E-05 31.1 0.1 43 295-339 3-49 (50)
78 KOG1571 Predicted E3 ubiquitin 80.4 4.2 9.2E-05 38.6 5.9 61 163-225 209-269 (355)
79 COG5194 APC11 Component of SCF 77.9 1 2.2E-05 33.1 0.8 41 295-336 32-81 (88)
80 PF11793 FANCL_C: FANCL C-term 77.6 0.57 1.2E-05 33.9 -0.6 41 295-336 3-66 (70)
81 KOG3161 Predicted E3 ubiquitin 76.7 0.78 1.7E-05 46.5 -0.0 38 294-333 11-54 (861)
82 KOG1941 Acetylcholine receptor 75.4 1.6 3.4E-05 41.8 1.6 43 293-336 364-416 (518)
83 KOG3579 Predicted E3 ubiquitin 74.1 1.2 2.6E-05 40.7 0.5 30 294-324 268-301 (352)
84 cd04488 RecG_wedge_OBF RecG_we 72.1 8.1 0.00018 27.1 4.4 29 170-199 43-71 (75)
85 PHA03096 p28-like protein; Pro 71.9 1.1 2.4E-05 41.7 -0.3 40 295-335 179-236 (284)
86 KOG4445 Uncharacterized conser 71.0 0.84 1.8E-05 42.1 -1.3 41 295-336 116-186 (368)
87 KOG2114 Vacuolar assembly/sort 70.3 4.4 9.6E-05 42.6 3.5 47 295-342 841-889 (933)
88 KOG2113 Predicted RNA binding 70.1 2 4.3E-05 39.9 0.9 48 294-341 136-188 (394)
89 KOG1493 Anaphase-promoting com 69.6 0.71 1.5E-05 33.7 -1.7 40 296-336 33-81 (84)
90 PF05883 Baculo_RING: Baculovi 67.9 1.6 3.4E-05 35.7 -0.2 30 295-325 27-65 (134)
91 PF01336 tRNA_anti-codon: OB-f 67.3 6.7 0.00014 27.8 3.1 58 106-197 12-69 (75)
92 KOG4362 Transcriptional regula 64.8 1.8 3.8E-05 44.7 -0.6 42 295-337 22-70 (684)
93 KOG3799 Rab3 effector RIM1 and 62.0 11 0.00025 30.6 3.6 39 294-335 65-117 (169)
94 PLN02189 cellulose synthase 60.4 5.2 0.00011 43.4 1.9 43 294-337 34-88 (1040)
95 PF10883 DUF2681: Protein of u 56.3 76 0.0016 24.0 7.0 25 237-261 16-40 (87)
96 KOG1940 Zn-finger protein [Gen 55.7 2.5 5.4E-05 39.0 -1.2 45 296-342 160-212 (276)
97 KOG4218 Nuclear hormone recept 54.7 5.3 0.00012 37.7 0.8 26 292-321 13-38 (475)
98 PF14880 COX14: Cytochrome oxi 52.8 74 0.0016 22.0 6.6 34 222-255 15-48 (59)
99 PF04710 Pellino: Pellino; In 51.9 4.8 0.0001 38.8 0.0 29 306-334 303-337 (416)
100 PRK01844 hypothetical protein; 51.7 14 0.0003 26.8 2.3 36 3-40 8-43 (72)
101 PF05961 Chordopox_A13L: Chord 51.4 11 0.00024 26.8 1.8 23 3-25 6-28 (68)
102 PF08114 PMP1_2: ATPase proteo 51.2 42 0.00091 21.4 4.1 23 230-252 16-38 (43)
103 cd04489 ExoVII_LU_OBF ExoVII_L 51.2 49 0.0011 23.6 5.4 27 169-195 42-69 (78)
104 PHA02825 LAP/PHD finger-like p 51.0 9 0.00019 32.3 1.4 43 293-336 7-59 (162)
105 KOG3842 Adaptor protein Pellin 50.9 12 0.00025 35.0 2.3 36 305-341 315-356 (429)
106 PF07191 zinc-ribbons_6: zinc- 50.8 4.1 9E-05 29.4 -0.5 39 295-338 2-43 (70)
107 KOG2041 WD40 repeat protein [G 50.6 63 0.0014 34.0 7.5 46 293-338 1130-1187(1189)
108 PF04216 FdhE: Protein involve 48.4 12 0.00026 34.9 2.1 47 294-341 172-227 (290)
109 cd00729 rubredoxin_SM Rubredox 47.1 9.3 0.0002 23.4 0.7 15 326-340 19-33 (34)
110 KOG3899 Uncharacterized conser 45.1 5.9 0.00013 36.6 -0.5 23 312-335 325-364 (381)
111 PF10217 DUF2039: Uncharacteri 45.0 3.5 7.5E-05 31.5 -1.7 36 294-334 55-90 (92)
112 KOG3113 Uncharacterized conser 44.8 12 0.00025 34.0 1.3 44 293-337 110-159 (293)
113 PF08693 SKG6: Transmembrane a 44.7 9.6 0.00021 24.3 0.6 13 10-22 26-38 (40)
114 PF12273 RCR: Chitin synthesis 44.2 16 0.00036 29.6 2.0 10 19-28 19-28 (130)
115 COG3763 Uncharacterized protei 43.7 23 0.00049 25.5 2.4 34 4-40 9-43 (71)
116 KOG2930 SCF ubiquitin ligase, 43.5 8.6 0.00019 29.9 0.2 24 310-334 79-106 (114)
117 KOG0825 PHD Zn-finger protein 43.1 7.4 0.00016 40.7 -0.2 43 296-339 101-157 (1134)
118 PF06305 DUF1049: Protein of u 43.0 1.1E+02 0.0024 21.2 7.2 22 244-265 41-62 (68)
119 KOG2034 Vacuolar sorting prote 42.0 29 0.00063 37.0 3.8 30 294-324 817-848 (911)
120 PHA03049 IMV membrane protein; 41.7 22 0.00047 25.2 2.0 22 3-24 6-27 (68)
121 cd04492 YhaM_OBF_like YhaM_OBF 41.7 68 0.0015 22.8 4.9 26 170-196 44-69 (83)
122 PF03672 UPF0154: Uncharacteri 41.2 30 0.00066 24.5 2.7 34 5-40 3-36 (64)
123 PF00672 HAMP: HAMP domain; I 40.7 18 0.00038 25.3 1.5 33 1-33 1-33 (70)
124 KOG1812 Predicted E3 ubiquitin 40.5 8.4 0.00018 37.5 -0.3 30 294-324 146-179 (384)
125 PF01102 Glycophorin_A: Glycop 40.0 16 0.00034 29.5 1.3 9 16-24 85-93 (122)
126 PF10571 UPF0547: Uncharacteri 38.8 16 0.00035 20.9 0.8 17 318-334 3-23 (26)
127 KOG2817 Predicted E3 ubiquitin 38.6 12 0.00027 36.0 0.5 40 295-335 335-384 (394)
128 KOG3970 Predicted E3 ubiquitin 38.2 15 0.00033 32.6 1.0 41 295-336 51-105 (299)
129 PF12120 Arr-ms: Rifampin ADP- 37.9 29 0.00063 26.5 2.3 46 118-185 52-97 (100)
130 PF00558 Vpu: Vpu protein; In 37.5 36 0.00078 25.4 2.7 20 243-262 26-45 (81)
131 KOG2068 MOT2 transcription fac 36.3 21 0.00046 33.7 1.6 43 294-337 249-299 (327)
132 COG1198 PriA Primosomal protei 35.9 17 0.00037 38.4 1.1 15 311-325 440-454 (730)
133 cd04483 hOBFC1_like hOBFC1_lik 35.9 1.9E+02 0.0041 21.8 8.1 18 170-187 60-77 (92)
134 PF10235 Cript: Microtubule-as 35.6 19 0.00041 27.4 1.0 38 294-337 44-81 (90)
135 PF04423 Rad50_zn_hook: Rad50 35.4 14 0.00029 25.0 0.2 9 327-335 22-30 (54)
136 PRK11677 hypothetical protein; 34.2 35 0.00075 28.1 2.4 28 2-29 3-30 (134)
137 PHA02610 uvsY.-2 hypothetical 34.0 19 0.0004 24.3 0.6 15 326-340 2-16 (53)
138 PF14569 zf-UDP: Zinc-binding 33.9 12 0.00026 27.5 -0.3 43 294-337 9-63 (80)
139 PF10886 DUF2685: Protein of u 33.6 19 0.00042 24.5 0.7 14 326-339 2-15 (54)
140 PF10146 zf-C4H2: Zinc finger- 32.4 15 0.00032 33.2 -0.1 20 317-336 196-219 (230)
141 smart00734 ZnF_Rad18 Rad18-lik 32.3 20 0.00044 20.4 0.6 10 326-335 2-11 (26)
142 COG3809 Uncharacterized protei 30.5 19 0.00041 26.5 0.3 8 326-333 22-29 (88)
143 PF10855 DUF2648: Protein of u 30.4 42 0.00092 20.2 1.7 22 5-28 5-26 (33)
144 COG5183 SSM4 Protein involved 30.3 21 0.00045 37.7 0.6 43 294-336 12-66 (1175)
145 PF01102 Glycophorin_A: Glycop 30.2 27 0.00059 28.2 1.2 28 217-244 61-88 (122)
146 KOG3039 Uncharacterized conser 29.8 20 0.00044 32.3 0.4 29 295-324 44-72 (303)
147 PRK03564 formate dehydrogenase 29.7 36 0.00077 32.1 2.0 41 293-333 186-234 (309)
148 cd04490 PolII_SU_OBF PolII_SU_ 29.7 1.2E+02 0.0026 22.2 4.5 19 169-187 44-62 (79)
149 PF07975 C1_4: TFIIH C1-like d 29.5 30 0.00065 23.4 1.1 21 311-332 26-50 (51)
150 KOG0298 DEAD box-containing he 29.3 12 0.00027 41.3 -1.2 43 294-337 1153-1200(1394)
151 PF09297 zf-NADH-PPase: NADH p 29.0 15 0.00033 21.9 -0.4 20 314-334 3-30 (32)
152 TIGR01562 FdhE formate dehydro 28.8 30 0.00064 32.6 1.3 40 294-334 184-233 (305)
153 PRK13254 cytochrome c-type bio 28.8 1.8E+02 0.0038 24.3 5.8 18 109-126 70-87 (148)
154 cd04478 RPA2_DBD_D RPA2_DBD_D: 28.7 2.4E+02 0.0053 20.8 7.2 23 171-194 46-68 (95)
155 PRK01343 zinc-binding protein; 28.5 28 0.00061 24.1 0.8 11 326-336 10-20 (57)
156 PF07295 DUF1451: Protein of u 28.1 36 0.00077 28.4 1.6 28 306-334 112-139 (146)
157 COG1592 Rubrerythrin [Energy p 27.9 27 0.00057 29.8 0.8 24 312-339 140-163 (166)
158 KOG1705 Uncharacterized conser 27.9 27 0.00059 26.4 0.7 34 295-333 28-63 (110)
159 COG1107 Archaea-specific RecJ- 27.7 2.2E+02 0.0048 29.3 7.2 52 173-225 259-337 (715)
160 PF10882 bPH_5: Bacterial PH d 27.2 1.4E+02 0.003 22.5 4.7 29 190-219 70-98 (100)
161 PF07787 DUF1625: Protein of u 26.9 4.6E+02 0.01 23.6 8.8 65 175-242 132-204 (248)
162 KOG1819 FYVE finger-containing 26.8 1.2E+02 0.0026 30.4 5.0 29 295-324 902-934 (990)
163 PRK00398 rpoP DNA-directed RNA 26.6 23 0.0005 23.0 0.2 22 315-336 3-32 (46)
164 PF12906 RINGv: RING-variant d 26.4 33 0.00072 22.5 0.9 35 297-331 1-47 (47)
165 PF12669 P12: Virus attachment 26.2 60 0.0013 22.5 2.2 6 2-7 2-7 (58)
166 KOG1815 Predicted E3 ubiquitin 26.2 21 0.00045 35.5 -0.2 30 294-324 70-100 (444)
167 TIGR03141 cytochro_ccmD heme e 25.1 2E+02 0.0043 18.6 5.5 12 225-236 8-19 (45)
168 PF13240 zinc_ribbon_2: zinc-r 25.0 31 0.00068 19.0 0.5 18 318-335 2-23 (23)
169 CHL00008 petG cytochrome b6/f 24.8 76 0.0016 19.7 2.1 21 2-22 9-31 (37)
170 PRK00665 petG cytochrome b6-f 24.8 76 0.0016 19.7 2.1 21 2-22 9-31 (37)
171 PF02891 zf-MIZ: MIZ/SP-RING z 24.7 44 0.00095 22.3 1.2 38 296-334 4-50 (50)
172 KOG4451 Uncharacterized conser 24.2 22 0.00048 31.6 -0.3 20 317-336 251-274 (286)
173 cd04485 DnaE_OBF DnaE_OBF: A s 24.2 1.1E+02 0.0024 21.4 3.5 25 170-195 45-69 (84)
174 PLN02400 cellulose synthase 24.1 52 0.0011 36.2 2.2 43 294-337 36-90 (1085)
175 PF05545 FixQ: Cbb3-type cytoc 24.0 79 0.0017 20.8 2.4 22 10-32 21-43 (49)
176 TIGR00595 priA primosomal prot 23.9 39 0.00085 34.2 1.3 20 29-48 28-47 (505)
177 PRK10917 ATP-dependent DNA hel 23.6 1E+02 0.0022 32.5 4.3 30 168-198 103-132 (681)
178 smart00834 CxxC_CXXC_SSSS Puta 23.4 33 0.00072 21.3 0.4 13 325-337 26-38 (41)
179 KOG0006 E3 ubiquitin-protein l 23.4 42 0.0009 31.6 1.2 29 294-323 221-251 (446)
180 PF09835 DUF2062: Uncharacteri 23.2 3.2E+02 0.0069 22.5 6.5 29 207-235 103-131 (154)
181 PF05568 ASFV_J13L: African sw 23.1 69 0.0015 26.6 2.3 16 17-32 50-65 (189)
182 PRK00418 DNA gyrase inhibitor; 23.1 38 0.00082 23.9 0.7 11 326-336 7-17 (62)
183 cd04482 RPA2_OBF_like RPA2_OBF 22.6 3.3E+02 0.0072 20.4 5.9 18 171-188 46-63 (91)
184 PLN02436 cellulose synthase A 22.5 75 0.0016 35.0 3.0 43 294-337 36-90 (1094)
185 cd00350 rubredoxin_like Rubred 22.3 40 0.00087 20.2 0.6 15 326-340 18-32 (33)
186 PF14316 DUF4381: Domain of un 22.3 2E+02 0.0042 23.7 5.0 13 237-249 35-47 (146)
187 PF10083 DUF2321: Uncharacteri 22.1 21 0.00045 30.0 -0.9 25 313-338 27-52 (158)
188 PF15102 TMEM154: TMEM154 prot 21.8 29 0.00062 28.9 -0.2 16 9-24 71-86 (146)
189 PRK00523 hypothetical protein; 21.6 3.2E+02 0.0069 19.9 5.1 29 223-251 6-34 (72)
190 cd00730 rubredoxin Rubredoxin; 21.4 42 0.00091 22.5 0.6 14 327-340 36-49 (50)
191 PRK13872 conjugal transfer pro 21.2 1.1E+02 0.0023 27.4 3.4 32 198-229 15-46 (228)
192 PF04995 CcmD: Heme exporter p 21.2 2.4E+02 0.0053 18.2 6.0 8 226-233 8-15 (46)
193 PRK07218 replication factor A; 21.1 1.1E+02 0.0025 30.2 3.8 57 57-126 281-340 (423)
194 PF05605 zf-Di19: Drought indu 21.0 13 0.00027 25.2 -2.0 11 326-336 32-42 (54)
195 PF03884 DUF329: Domain of unk 20.7 31 0.00068 23.8 -0.1 11 327-337 4-14 (57)
No 1
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-46 Score=343.89 Aligned_cols=342 Identities=33% Similarity=0.531 Sum_probs=300.7
Q ss_pred CccchhhHHHHHHHHHHHHHhcch---hhhHhhcccccccchhHHHHhhccC-CCccccEEEEEEEeec-CCCccccC-C
Q 019204 1 MISWGGISCCLSGAALYLLGRSSG---RDAELLKTVTRVNQLEELAHLLDGG-SKVLPSIVSVSGRVGS-ETPISCEY-S 74 (344)
Q Consensus 1 m~~~g~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~L~~~l~~~-~~~~~~~V~v~G~v~~-~~pl~s~~-s 74 (344)
|++-+.+++++..+++++.++.+. +..+.++.++....+.++...++.. .+.++|+ .++|.+.+ ..|+.+-. +
T Consensus 1 ~~l~~~~~~~~~~v~l~l~~~~~g~~~~~s~~~~~a~k~~~~~d~~~~~~~~~~~~I~~l-~~~~~~~~~~~~~~~~~v~ 79 (355)
T KOG1571|consen 1 MSLEGRFLLGLTNVALRLLFRQYGRLPRVSKVGKEAEKVLVLVDLKSSWDIAPEKKIPYL-VIRGCAIARKETLRSLCVS 79 (355)
T ss_pred CchhHHHHHhhhHHHHHhhhhhcccchhhHHHhhhccceecchhhhhhhhhccccchHHH-HHhhcccccccchHHhhcc
Confidence 566677777777777766666544 4456667888888999999888775 8999999 59999999 77777666 8
Q ss_pred CceEEEEEEEEEEEEEEeecCCceEeceeeEeecccEEeEEEECCceE----EEEecCCCCccceeeeeeeeeecCc-cc
Q 019204 75 GLRGVIVEETTERHFLKHNDAGSWIQDSALMLSMSKEVPWYLDDGTGC----VFVVGARGATGFALTVGSEVFEESG-RS 149 (344)
Q Consensus 75 ~~~~V~~~~~i~e~~~~~~~~~~w~~~~~~v~~~~~~vpF~L~D~tg~----v~V~~~~~a~~~~~~~~~~~~~~~~-~~ 149 (344)
+.++|.+..+.+++...++..+.|.+.++.++++.+++||+|.+.++. +++..+++...++++++++.|++.. .+
T Consensus 80 ~v~gvv~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~l~~q~~~~~~~~~~s~~~~~~~l~l~~~~d~f~~s~p~s 159 (355)
T KOG1571|consen 80 NVPGVVQALTLEEPKGRRDGGGHWNANSKIFHEGGNEVPFFLRSQTTGFACEVRVSKTLGRLFLPLNVVYDLFEPSDPCS 159 (355)
T ss_pred cCCceEEEeeeccceeeeccceeeccceeeccCCCcccceeeccCCcceeeeeeeecceeeeeecceeeeccccccCcce
Confidence 999999999999999888778889999999999999999999999887 9999999999999999999999987 57
Q ss_pred ccccccccccceeeeeEEEEeccccCCceeEEeeeEEecCCCceEEecCCCCceEeccCCHHHHHHHhhhhhHHHHHHHh
Q 019204 150 LVHGTLDYLQGLKMLGVKRIGRLLPTGTSLTVVGEAVKDDIGTVRIQRPHKGPFYVSPKTIDELLENLGKWARWYKYASF 229 (344)
Q Consensus 150 ~~~~~~~~~~g~~~~g~r~~E~~L~~G~~l~vvGe~~~d~~g~~~i~~p~~~~f~ls~~~~~~L~~~l~~~ar~~~~~~i 229 (344)
+.+...++++|.+..|.+.+|++|++|+.+|++||++.|+.+...+|+|.+|++|+.....|.|+.+++.+++..++.++
T Consensus 160 ~~~~~~~~~sg~~~~~~~~~~~~l~~~~~~t~l~e~v~d~~~~~r~~~~~~g~~~v~~s~~d~LIsr~g~~s~~~kv~~~ 239 (355)
T KOG1571|consen 160 LVDVGGGYHSGVRRGGFRETERVLPLGTRLTALGELVRDGYCGVRVQPPMQGPLYVTKSAADRLISREGDLSFFVKVNGM 239 (355)
T ss_pred eeecccccccceeeecccceEEeeccccceeeeehheecCCCceEecCCccCcceeeccchhhHHHhhccceeeeeecce
Confidence 88899999999999999999999999999999999999988999999999996544444499999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccCCccccccccccccccce
Q 019204 230 GLTIFGAFLIAKRVIRCILQ--RKRRWELRRRVLAAAAVQRSEQDNEGTNGQAENGSDSTQRDRVMPDLCVICLEQEYNA 307 (344)
Q Consensus 230 ~l~~~G~~ll~~~~~r~~~~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~iC~~~~~~~ 307 (344)
++++.|++++.....+++++ +++++++...+.++.+ .+.+....+...+-+..++....+.+.+..|+||.+++.++
T Consensus 240 ~~~~~~~ills~~~~d~~led~r~~r~~l~k~~~~~~~-~rae~~s~g~~gtr~~~~~~~~~~~~~p~lcVVcl~e~~~~ 318 (355)
T KOG1571|consen 240 VFGTLGVILLSFIVKDNYLEDDRRQRRELVKRVEDLAT-VRAELLSRGVRGTRIQNENGTFRELPQPDLCVVCLDEPKSA 318 (355)
T ss_pred eeeeeeEEeehHHHHHHHHHHHHHHHHHHHHhhhhhhh-heeeeecccccccccccccCcccccCCCCceEEecCCccce
Confidence 99999999999999999988 7777888887777777 66666666666655556666777778889999999999999
Q ss_pred EEecCCCcccccchhhCCCCCccccccccceEecccC
Q 019204 308 VFFPCGHLCCCLICSSRLTNCPLCRRRIDQVVRTFRH 344 (344)
Q Consensus 308 ~~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~~~i~~~ 344 (344)
+|+||||+|||..|+..++.||+||+.|..++++|+|
T Consensus 319 ~fvpcGh~ccct~cs~~l~~CPvCR~rI~~~~k~y~~ 355 (355)
T KOG1571|consen 319 VFVPCGHVCCCTLCSKHLPQCPVCRQRIRLVRKRYRS 355 (355)
T ss_pred eeecCCcEEEchHHHhhCCCCchhHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999987
No 2
>PF12483 GIDE: E3 Ubiquitin ligase; InterPro: IPR022170 This domain family is found in bacteria, archaea and eukaryotes, and is typically between 150 and 163 amino acids in length. There is a single completely conserved residue E that may be functionally important. GIDE is an E3 ubiquitin ligase which is involved in inducing apoptosis. ; GO: 0016881 acid-amino acid ligase activity
Probab=99.97 E-value=5.2e-31 Score=224.88 Aligned_cols=140 Identities=36% Similarity=0.617 Sum_probs=130.3
Q ss_pred CCceEeceeeEeecccEEeEEEECCceEEEEecCCCCccceeeeeeeeeecCccccccccccccccee---eeeEEEEec
Q 019204 95 AGSWIQDSALMLSMSKEVPWYLDDGTGCVFVVGARGATGFALTVGSEVFEESGRSLVHGTLDYLQGLK---MLGVKRIGR 171 (344)
Q Consensus 95 ~~~w~~~~~~v~~~~~~vpF~L~D~tg~v~V~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~g~r~~E~ 171 (344)
+++|.+.|++++++.+++||+|+|+||+|+|+++..+..+++++++++|+|...+..+.+.++++|.+ ++||||+|+
T Consensus 12 ~~~~~~~~~~v~~~~~~vPF~L~D~tg~v~V~~~p~~a~l~l~~v~~~f~p~~~~~~~~~~~~~~~~~~~~~~G~r~~E~ 91 (160)
T PF12483_consen 12 SRRWSSSWRTVSSGTSEVPFYLEDGTGRVRVVDDPEGAELDLETVYDRFEPSPSSPPDGLFGFFSGERELEPKGYRYTEE 91 (160)
T ss_pred CCcccccEEEEEcceeEcCEEEECCceEEEEecCcccCccceeeEEEEeEECCCCccceeeeeeccceeccccccEEEEE
Confidence 57899999999999999999999999999996666666688999999999887777788888999988 999999999
Q ss_pred cccCCceeEEeeeEEecCCCceEEecCCCC--ceEeccCCHHHHHHHhhhhhHHHHHHHhhhHHH
Q 019204 172 LLPTGTSLTVVGEAVKDDIGTVRIQRPHKG--PFYVSPKTIDELLENLGKWARWYKYASFGLTIF 234 (344)
Q Consensus 172 ~L~~G~~l~vvGe~~~d~~g~~~i~~p~~~--~f~ls~~~~~~L~~~l~~~ar~~~~~~i~l~~~ 234 (344)
+|++|++|||+|++..|++|.+.|++|+++ |||||++++++|++++++++++|++++++++++
T Consensus 92 ~L~~G~~ltvvGe~~~~~~g~~~i~~p~~g~~~f~iS~~s~~~l~~~~~~~~~~~~~~~i~~~~~ 156 (160)
T PF12483_consen 92 ILPVGTPLTVVGELVRDGDGNLVIQPPKDGGQPFFISTKSEEELIRSLRSSARWWKWLAIALGVV 156 (160)
T ss_pred EcCCCCEEEEEEEEEEcCCCcEEEeCCCCCCccEEEeCCCHHHHHHHHHHHHHHHHHHHhheeEE
Confidence 999999999999999999999999999998 999999999999999999999999999998765
No 3
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=4.1e-15 Score=98.98 Aligned_cols=50 Identities=44% Similarity=1.152 Sum_probs=47.0
Q ss_pred cccccccccccceEEecCCCcccccchhhCC-----CCCccccccccceEecccC
Q 019204 295 DLCVICLEQEYNAVFFPCGHLCCCLICSSRL-----TNCPLCRRRIDQVVRTFRH 344 (344)
Q Consensus 295 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~CR~~i~~~~~i~~~ 344 (344)
.+|.||++++.+.++.-|||+|.|++|..++ ..||+||.+|..+++.|+|
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY~s 62 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTYRS 62 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhhcC
Confidence 5899999999999999999999999999876 4799999999999999987
No 4
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=3.2e-13 Score=120.54 Aligned_cols=51 Identities=43% Similarity=1.070 Sum_probs=49.3
Q ss_pred ccccccccccccceEEecCCCcccccchhhCCCCCccccccccceEecccC
Q 019204 294 PDLCVICLEQEYNAVFFPCGHLCCCLICSSRLTNCPLCRRRIDQVVRTFRH 344 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~~~i~~~ 344 (344)
..+|.|||+.|++++|++|||+..|..|...|..|||||+.|.++++||++
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~eCPICRqyi~rvvrif~~ 350 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRMNECPICRQYIVRVVRIFRV 350 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccccccCchHHHHHHHHHhhhcC
Confidence 579999999999999999999999999999999999999999999999985
No 5
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=1.8e-12 Score=119.81 Aligned_cols=52 Identities=38% Similarity=0.981 Sum_probs=47.1
Q ss_pred ccccccccccccccceEEecCCCcccccchhhCC----CCCccccccccceEeccc
Q 019204 292 VMPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQVVRTFR 343 (344)
Q Consensus 292 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~~~~i~~ 343 (344)
++...|+||++..++++++||+|+|+|..|+..+ .+||+||++|.....|+.
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~~ 343 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIYV 343 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhheecc
Confidence 3456999999999999999999999999999887 479999999999988875
No 6
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.22 E-value=3e-12 Score=87.31 Aligned_cols=45 Identities=47% Similarity=1.198 Sum_probs=39.1
Q ss_pred ccccccccccccceEEecCCCcccccchhhCC----CCCccccccccce
Q 019204 294 PDLCVICLEQEYNAVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQV 338 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~~ 338 (344)
+..|.||++++++++++||||.++|..|+.++ ..||+||++|+++
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~V 50 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIESV 50 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SEE
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcCC
Confidence 35899999999999999999997799999887 7999999999864
No 7
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=1.1e-09 Score=95.70 Aligned_cols=48 Identities=33% Similarity=0.764 Sum_probs=42.8
Q ss_pred ccccccccccccceEEecCCCcccccchhhCC-------CCCcccccccc--ceEecc
Q 019204 294 PDLCVICLEQEYNAVFFPCGHLCCCLICSSRL-------TNCPLCRRRID--QVVRTF 342 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-------~~CP~CR~~i~--~~~~i~ 342 (344)
...|-||+|.+++.+++.|||+| ||.|+.++ +.||+|+..|. .+++||
T Consensus 47 ~FdCNICLd~akdPVvTlCGHLF-CWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 47 FFDCNICLDLAKDPVVTLCGHLF-CWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred ceeeeeeccccCCCEEeecccce-ehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 45999999999999999999999 99999875 57999998775 688887
No 8
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=6.7e-10 Score=99.89 Aligned_cols=45 Identities=36% Similarity=0.894 Sum_probs=39.9
Q ss_pred ccccccccccccceEEecCCCcccccchhhCC----CCCccccccccceE
Q 019204 294 PDLCVICLEQEYNAVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQVV 339 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~~~ 339 (344)
...|.+|++++.+...+||||+| ||+|+... ..||+||.+..-..
T Consensus 239 ~~kC~LCLe~~~~pSaTpCGHiF-CWsCI~~w~~ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 239 TRKCSLCLENRSNPSATPCGHIF-CWSCILEWCSEKAECPLCREKFQPSK 287 (293)
T ss_pred CCceEEEecCCCCCCcCcCcchH-HHHHHHHHHccccCCCcccccCCCcc
Confidence 35999999999999999999999 99999875 68999999886543
No 9
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.69 E-value=8.1e-09 Score=88.82 Aligned_cols=49 Identities=33% Similarity=0.788 Sum_probs=41.7
Q ss_pred cccccccccccccceEEecCCCcccccchhhCC--------------------CCCccccccccc--eEecc
Q 019204 293 MPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL--------------------TNCPLCRRRIDQ--VVRTF 342 (344)
Q Consensus 293 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~--------------------~~CP~CR~~i~~--~~~i~ 342 (344)
....|.||++...+.++++|||.| |+.|+... ..||+||.+|.. ++++|
T Consensus 17 ~~~~CpICld~~~dPVvT~CGH~F-C~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 17 GDFDCNICLDQVRDPVVTLCGHLF-CWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred CccCCccCCCcCCCcEEcCCCchh-HHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 356899999999999999999999 99999531 479999999964 66766
No 10
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=5.7e-08 Score=85.71 Aligned_cols=47 Identities=38% Similarity=0.867 Sum_probs=44.7
Q ss_pred ccccccccccceEEecCCCcccccchhhCCCCCccccccccceEecc
Q 019204 296 LCVICLEQEYNAVFFPCGHLCCCLICSSRLTNCPLCRRRIDQVVRTF 342 (344)
Q Consensus 296 ~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~~~i~ 342 (344)
.|..|.++...++++||.|+++|..|......||+|+.++.+.+.+|
T Consensus 160 ~Cr~C~~~~~~VlllPCrHl~lC~~C~~~~~~CPiC~~~~~s~~~v~ 206 (207)
T KOG1100|consen 160 SCRKCGEREATVLLLPCRHLCLCGICDESLRICPICRSPKTSSVEVN 206 (207)
T ss_pred cceecCcCCceEEeecccceEecccccccCccCCCCcChhhceeecc
Confidence 49999999999999999999999999998889999999999998887
No 11
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=5.2e-08 Score=81.80 Aligned_cols=47 Identities=34% Similarity=0.841 Sum_probs=38.7
Q ss_pred cccccccccccceE-E-ecCCCcccccchhhCC----CCCccccccccc--eEecc
Q 019204 295 DLCVICLEQEYNAV-F-FPCGHLCCCLICSSRL----TNCPLCRRRIDQ--VVRTF 342 (344)
Q Consensus 295 ~~C~iC~~~~~~~~-~-~pCgH~~~C~~C~~~~----~~CP~CR~~i~~--~~~i~ 342 (344)
..|+|||+.....+ + ..|||+| |..|+... .+||+||++|+. +.+||
T Consensus 132 ~~CPiCl~~~sek~~vsTkCGHvF-C~~Cik~alk~~~~CP~C~kkIt~k~~~rI~ 186 (187)
T KOG0320|consen 132 YKCPICLDSVSEKVPVSTKCGHVF-CSQCIKDALKNTNKCPTCRKKITHKQFHRIY 186 (187)
T ss_pred cCCCceecchhhccccccccchhH-HHHHHHHHHHhCCCCCCcccccchhhheecc
Confidence 58999999776655 3 7999999 99999875 689999998864 66666
No 12
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.41 E-value=6.9e-08 Score=62.02 Aligned_cols=34 Identities=41% Similarity=1.118 Sum_probs=28.7
Q ss_pred cccccccccce-EEecCCCcccccchhhCC----CCCccc
Q 019204 297 CVICLEQEYNA-VFFPCGHLCCCLICSSRL----TNCPLC 331 (344)
Q Consensus 297 C~iC~~~~~~~-~~~pCgH~~~C~~C~~~~----~~CP~C 331 (344)
|+||++...+. ++++|||.+ |.+|+.+. .+||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~f-C~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSF-CKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEE-EHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCch-hHHHHHHHHHCcCCCcCC
Confidence 89999999998 689999999 99998764 689988
No 13
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.38 E-value=1.3e-07 Score=84.76 Aligned_cols=47 Identities=30% Similarity=0.884 Sum_probs=38.2
Q ss_pred ccccccccccccc--------eEEecCCCcccccchhhCC----CCCccccccccceEec
Q 019204 294 PDLCVICLEQEYN--------AVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQVVRT 341 (344)
Q Consensus 294 ~~~C~iC~~~~~~--------~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~~~~i 341 (344)
...|+||++...+ .++.+|||.| |..|.... ..||+||.++..+++.
T Consensus 174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~H~F-C~~CI~~Wl~~~~tCPlCR~~~~~v~~~ 232 (238)
T PHA02929 174 DKECAICMEKVYDKEIKNMYFGILSNCNHVF-CIECIDIWKKEKNTCPVCRTPFISVIKS 232 (238)
T ss_pred CCCCccCCcccccCccccccceecCCCCCcc-cHHHHHHHHhcCCCCCCCCCEeeEEeee
Confidence 4589999996433 4667899999 99999764 6899999999987764
No 14
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=1.5e-07 Score=90.96 Aligned_cols=48 Identities=35% Similarity=0.764 Sum_probs=41.8
Q ss_pred ccccccccccccceEEecCCCcccccchhhCC---------CCCccccccccc--eEecc
Q 019204 294 PDLCVICLEQEYNAVFFPCGHLCCCLICSSRL---------TNCPLCRRRIDQ--VVRTF 342 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~---------~~CP~CR~~i~~--~~~i~ 342 (344)
+..|+||++++..+..+.|||+| |..|+..+ ..||+||..|.- +.++|
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiF-C~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~ 244 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIF-CGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVF 244 (513)
T ss_pred CCcCCcccCCCCcccccccCcee-eHHHHHHHHhhhcccCCccCCchhhhccccceeeee
Confidence 67999999999999999999999 99998764 589999999976 55554
No 15
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.29 E-value=1.8e-07 Score=61.70 Aligned_cols=36 Identities=42% Similarity=0.958 Sum_probs=30.2
Q ss_pred ccccccccc---cceEEecCCCcccccchhhCC----CCCcccc
Q 019204 296 LCVICLEQE---YNAVFFPCGHLCCCLICSSRL----TNCPLCR 332 (344)
Q Consensus 296 ~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~----~~CP~CR 332 (344)
.|.||++.. ..++.++|||.| |.+|+..+ ..||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~f-h~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVF-HRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEE-EHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCee-CHHHHHHHHHhCCcCCccC
Confidence 699999865 467888999999 99999875 6999998
No 16
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.23 E-value=4.5e-07 Score=59.84 Aligned_cols=37 Identities=38% Similarity=1.034 Sum_probs=31.6
Q ss_pred ccccccccc---cceEEecCCCcccccchhhCCC----CCccccc
Q 019204 296 LCVICLEQE---YNAVFFPCGHLCCCLICSSRLT----NCPLCRR 333 (344)
Q Consensus 296 ~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~~----~CP~CR~ 333 (344)
.|.+|++.. ....+++|||.+ |..|+..+. .||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~-C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIF-CEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHH-HHHHHHhhcCCCCCCcCCCC
Confidence 388898866 458889999999 999999876 9999985
No 17
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=1.5e-05 Score=74.89 Aligned_cols=42 Identities=38% Similarity=0.839 Sum_probs=34.2
Q ss_pred cccccccccccc---eEEecCCCcccccchhhCC-----CCCccccccccc
Q 019204 295 DLCVICLEQEYN---AVFFPCGHLCCCLICSSRL-----TNCPLCRRRIDQ 337 (344)
Q Consensus 295 ~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~-----~~CP~CR~~i~~ 337 (344)
..|+||+|.... ...+||.|.| ...|.+.+ ..||+|++.|..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~F-H~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKF-HVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCch-hhccchhhHhhcCccCCCCCCcCCC
Confidence 599999995543 5678999999 67999885 359999998864
No 18
>PHA02926 zinc finger-like protein; Provisional
Probab=98.12 E-value=4.8e-07 Score=78.84 Aligned_cols=47 Identities=32% Similarity=0.815 Sum_probs=36.9
Q ss_pred cccccccccccc---------cceEEecCCCcccccchhhCC----------CCCccccccccceEe
Q 019204 293 MPDLCVICLEQE---------YNAVFFPCGHLCCCLICSSRL----------TNCPLCRRRIDQVVR 340 (344)
Q Consensus 293 ~~~~C~iC~~~~---------~~~~~~pCgH~~~C~~C~~~~----------~~CP~CR~~i~~~~~ 340 (344)
.+..|.||++.. +..++.+|+|.| |..|+... ..||+||.....+.+
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsF-Cl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~p 234 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIF-CITCINIWHRTRRETGASDNCPICRTRFRNITM 234 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchH-HHHHHHHHHHhccccCcCCcCCCCcceeeeecc
Confidence 346899999853 236778999999 99999865 239999999886654
No 19
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.08 E-value=1.1e-06 Score=57.34 Aligned_cols=34 Identities=47% Similarity=1.082 Sum_probs=26.9
Q ss_pred cccccccccceEEecCCCcccccchhhCC--------CCCccc
Q 019204 297 CVICLEQEYNAVFFPCGHLCCCLICSSRL--------TNCPLC 331 (344)
Q Consensus 297 C~iC~~~~~~~~~~pCgH~~~C~~C~~~~--------~~CP~C 331 (344)
|+||++-..+.+.++|||.| |..|+.++ -.||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~F-C~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSF-CRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEE-EHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHH-HHHHHHHHHHccCCcCCCCcCC
Confidence 89999999999999999999 99998764 269987
No 20
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=8.6e-07 Score=79.11 Aligned_cols=42 Identities=40% Similarity=0.887 Sum_probs=37.1
Q ss_pred ccccccccccccceEEecCCCcccccchhhC-C-----CCCcccccccc
Q 019204 294 PDLCVICLEQEYNAVFFPCGHLCCCLICSSR-L-----TNCPLCRRRID 336 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~-~-----~~CP~CR~~i~ 336 (344)
+..|.+|++.+-....+||||+| |+.|+.. . ..||+||+.+.
T Consensus 215 d~kC~lC~e~~~~ps~t~CgHlF-C~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 215 DYKCFLCLEEPEVPSCTPCGHLF-CLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred ccceeeeecccCCcccccccchh-hHHHHHHHHHhhccccCchhhhhcc
Confidence 45899999999999999999999 9999877 3 35999998764
No 21
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=7.9e-07 Score=90.03 Aligned_cols=47 Identities=30% Similarity=0.654 Sum_probs=41.8
Q ss_pred cccccccccccceEEecCCCcccccchhhCC-----CCCcccccccc--ceEecc
Q 019204 295 DLCVICLEQEYNAVFFPCGHLCCCLICSSRL-----TNCPLCRRRID--QVVRTF 342 (344)
Q Consensus 295 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~CR~~i~--~~~~i~ 342 (344)
..|++|.++++++++..|||+| |..|.... .+||.|..++. .+.+||
T Consensus 644 LkCs~Cn~R~Kd~vI~kC~H~F-C~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~ 697 (698)
T KOG0978|consen 644 LKCSVCNTRWKDAVITKCGHVF-CEECVQTRYETRQRKCPKCNAAFGANDVHRIH 697 (698)
T ss_pred eeCCCccCchhhHHHHhcchHH-HHHHHHHHHHHhcCCCCCCCCCCCcccccccC
Confidence 4899999999999999999999 99999774 69999999986 466666
No 22
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.96 E-value=1.9e-06 Score=80.71 Aligned_cols=47 Identities=36% Similarity=0.837 Sum_probs=41.2
Q ss_pred ccccccccccccceEEecCCCcccccchhhCC------CCCccccccccceEec
Q 019204 294 PDLCVICLEQEYNAVFFPCGHLCCCLICSSRL------TNCPLCRRRIDQVVRT 341 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~------~~CP~CR~~i~~~~~i 341 (344)
=.+|.||-++.+++.+-||||+- |..|.... +.||.||..|.+.-+|
T Consensus 369 FeLCKICaendKdvkIEPCGHLl-Ct~CLa~WQ~sd~gq~CPFCRcEIKGte~v 421 (563)
T KOG1785|consen 369 FELCKICAENDKDVKIEPCGHLL-CTSCLAAWQDSDEGQTCPFCRCEIKGTEPV 421 (563)
T ss_pred HHHHHHhhccCCCcccccccchH-HHHHHHhhcccCCCCCCCceeeEeccccce
Confidence 35999999999999999999999 99998765 5899999999875443
No 23
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=97.95 E-value=2.3e-06 Score=55.40 Aligned_cols=34 Identities=47% Similarity=1.144 Sum_probs=30.2
Q ss_pred cccccccccceE-EecCCCcccccchhhCC------CCCccc
Q 019204 297 CVICLEQEYNAV-FFPCGHLCCCLICSSRL------TNCPLC 331 (344)
Q Consensus 297 C~iC~~~~~~~~-~~pCgH~~~C~~C~~~~------~~CP~C 331 (344)
|.||++...+.. +++|||.+ |..|+.++ ..||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~f-C~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSF-CRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEE-EHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcc-hHHHHHHHHHhcCCccCCcC
Confidence 889999999988 89999999 99998764 579988
No 24
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.89 E-value=5e-06 Score=54.23 Aligned_cols=39 Identities=46% Similarity=1.095 Sum_probs=30.6
Q ss_pred ccccccccccceEE-ecCCCcccccchhhCC-----CCCccccccc
Q 019204 296 LCVICLEQEYNAVF-FPCGHLCCCLICSSRL-----TNCPLCRRRI 335 (344)
Q Consensus 296 ~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~-----~~CP~CR~~i 335 (344)
.|.||++...+.+. .+|||.+ |..|...+ ..||+||..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~-c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVF-CRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChh-cHHHHHHHHHhCcCCCCCCCCcC
Confidence 48999998855444 4599999 99998743 5799999864
No 25
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.84 E-value=8.3e-06 Score=51.26 Aligned_cols=34 Identities=44% Similarity=1.181 Sum_probs=30.0
Q ss_pred cccccccccceEEecCCCcccccchhhCC-----CCCccc
Q 019204 297 CVICLEQEYNAVFFPCGHLCCCLICSSRL-----TNCPLC 331 (344)
Q Consensus 297 C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~C 331 (344)
|.||++...+.+++||||.+ |..|.... ..||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~-c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTF-CRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChH-HHHHHHHHHHhCcCCCCCC
Confidence 78999999999999999998 99998743 579987
No 26
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=2.8e-05 Score=72.46 Aligned_cols=43 Identities=33% Similarity=0.869 Sum_probs=33.4
Q ss_pred ccccccccccccc-------------cceEEecCCCcccccchhhCC----CCCccccccc
Q 019204 292 VMPDLCVICLEQE-------------YNAVFFPCGHLCCCLICSSRL----TNCPLCRRRI 335 (344)
Q Consensus 292 ~~~~~C~iC~~~~-------------~~~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i 335 (344)
.++..|.||+|.. ....=+||||.. ...|.... +.||+||.++
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHil-Hl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHIL-HLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCccccccccee-eHHHHHHHHHhccCCCcccCcc
Confidence 3456999999961 123457999998 89998775 7999999984
No 27
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=97.78 E-value=9.1e-06 Score=57.69 Aligned_cols=41 Identities=22% Similarity=0.316 Sum_probs=36.8
Q ss_pred cccccccccccceEEecCCCcccccchhhCC----CCCcccccccc
Q 019204 295 DLCVICLEQEYNAVFFPCGHLCCCLICSSRL----TNCPLCRRRID 336 (344)
Q Consensus 295 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~ 336 (344)
..|+||.+...+.+.+||||.+ |..|+... ..||+|+.++.
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~-~~~~i~~~~~~~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTY-ERRAIEKWLLSHGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEE-eHHHHHHHHHHCCCCCCCcCCCC
Confidence 3699999999999999999999 99999875 58999999884
No 28
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.77 E-value=7.3e-06 Score=78.87 Aligned_cols=44 Identities=32% Similarity=0.690 Sum_probs=38.2
Q ss_pred cccccccccccccceEEecCCCcccccchhhCC----CCCccccccccc
Q 019204 293 MPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQ 337 (344)
Q Consensus 293 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~ 337 (344)
....|.||++...+.+++||||.| |..|+... ..||+||..+..
T Consensus 25 ~~l~C~IC~d~~~~PvitpCgH~F-Cs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 25 TSLRCHICKDFFDVPVLTSCSHTF-CSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred cccCCCcCchhhhCccCCCCCCch-hHHHHHHHHhCCCCCCCCCCcccc
Confidence 456999999999999999999999 99999753 579999998764
No 29
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=1.4e-05 Score=73.90 Aligned_cols=44 Identities=34% Similarity=0.803 Sum_probs=39.3
Q ss_pred cccccccccccccceEEecCCCcccccchhhCC----CCCccccccccc
Q 019204 293 MPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQ 337 (344)
Q Consensus 293 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~ 337 (344)
++++|+||+..+.+++|.||+|.- |..|+.+- +.|-.|+..+..
T Consensus 421 Ed~lCpICyA~pi~Avf~PC~H~S-C~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 421 EDNLCPICYAGPINAVFAPCSHRS-CYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred ccccCcceecccchhhccCCCCch-HHHHHHHHHhcCCeeeEecceeee
Confidence 457999999999999999999999 99999762 789999998875
No 30
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.58 E-value=1.7e-05 Score=51.78 Aligned_cols=27 Identities=41% Similarity=0.987 Sum_probs=17.9
Q ss_pred cccccccccc----eEEecCCCcccccchhhCC
Q 019204 297 CVICLEQEYN----AVFFPCGHLCCCLICSSRL 325 (344)
Q Consensus 297 C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~ 325 (344)
|+||.+ ..+ .+++||||.+ |.+|..++
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~-c~~cl~~l 31 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVF-CKDCLQKL 31 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EE-EHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccHH-HHHHHHHH
Confidence 889988 666 8889999999 99999876
No 31
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=97.57 E-value=3e-05 Score=52.62 Aligned_cols=42 Identities=31% Similarity=0.768 Sum_probs=36.9
Q ss_pred cccccccccccceEEecCCCcccccchhhC--CCCCccccccccc
Q 019204 295 DLCVICLEQEYNAVFFPCGHLCCCLICSSR--LTNCPLCRRRIDQ 337 (344)
Q Consensus 295 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~--~~~CP~CR~~i~~ 337 (344)
..|..|......-+++||||+. |..|... ...||+|..+++.
T Consensus 8 ~~~~~~~~~~~~~~~~pCgH~I-~~~~f~~~rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 8 QPCVFCGFVGTKGTVLPCGHLI-CDNCFPGERYNGCPFCGTPFEF 51 (55)
T ss_pred eeEEEcccccccccccccccee-eccccChhhccCCCCCCCcccC
Confidence 4799999998889999999999 9999764 5899999998864
No 32
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=4.3e-05 Score=69.50 Aligned_cols=42 Identities=29% Similarity=0.699 Sum_probs=35.1
Q ss_pred ccccccccccc---cceEEecCCCcccccchhhCC-----CCCcccccccc
Q 019204 294 PDLCVICLEQE---YNAVFFPCGHLCCCLICSSRL-----TNCPLCRRRID 336 (344)
Q Consensus 294 ~~~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~-----~~CP~CR~~i~ 336 (344)
.-.|+|||++. ...+++||.|.| ...|..+. ..||+||.+|.
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~F-H~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRF-HVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCcee-chhHHHHHHhhhcccCCccCCCCC
Confidence 45899999954 337888999999 89999885 58999999874
No 33
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.46 E-value=8.4e-05 Score=68.69 Aligned_cols=47 Identities=38% Similarity=0.846 Sum_probs=39.4
Q ss_pred ccccccccccccccceEEecCCCcccccchhhCC------CCCccccccccceE
Q 019204 292 VMPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL------TNCPLCRRRIDQVV 339 (344)
Q Consensus 292 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~------~~CP~CR~~i~~~~ 339 (344)
++...|.||-..-.-..++||+|.. |..|+.++ +.||+||..-+.++
T Consensus 59 Een~~C~ICA~~~TYs~~~PC~H~~-CH~Ca~RlRALY~~K~C~~CrTE~e~V~ 111 (493)
T COG5236 59 EENMNCQICAGSTTYSARYPCGHQI-CHACAVRLRALYMQKGCPLCRTETEAVV 111 (493)
T ss_pred cccceeEEecCCceEEEeccCCchH-HHHHHHHHHHHHhccCCCccccccceEE
Confidence 3456999999988888889999999 99999875 68999998766544
No 34
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.38 E-value=4.9e-05 Score=68.66 Aligned_cols=43 Identities=30% Similarity=0.556 Sum_probs=37.8
Q ss_pred ccccccccccccccceEEecCCCcccccchhhCC----CCCccccccc
Q 019204 292 VMPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL----TNCPLCRRRI 335 (344)
Q Consensus 292 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i 335 (344)
+....|.||-+..+..+.++|||.| |.-|+... +.||+||.+.
T Consensus 23 Ds~lrC~IC~~~i~ip~~TtCgHtF-CslCIR~hL~~qp~CP~Cr~~~ 69 (391)
T COG5432 23 DSMLRCRICDCRISIPCETTCGHTF-CSLCIRRHLGTQPFCPVCREDP 69 (391)
T ss_pred hhHHHhhhhhheeecceecccccch-hHHHHHHHhcCCCCCccccccH
Confidence 3456999999999999999999999 99999874 7899999764
No 35
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.30 E-value=5.6e-05 Score=69.66 Aligned_cols=43 Identities=28% Similarity=0.713 Sum_probs=38.3
Q ss_pred ccccccccccccceEEecCCCcccccchhhCC----CCCccccccccc
Q 019204 294 PDLCVICLEQEYNAVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQ 337 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~ 337 (344)
-..|-||.+-.+.++++||+|.| |.-|++.. +.||.|+.++..
T Consensus 23 lLRC~IC~eyf~ip~itpCsHtf-CSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 23 LLRCGICFEYFNIPMITPCSHTF-CSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred HHHHhHHHHHhcCceeccccchH-HHHHHHHHhccCCCCCceecccch
Confidence 34899999999999999999999 99999875 799999987753
No 36
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.28 E-value=0.00011 Score=53.89 Aligned_cols=36 Identities=44% Similarity=0.993 Sum_probs=27.4
Q ss_pred ccccccccc-------------cceEEecCCCcccccchhhCC----CCCcccc
Q 019204 296 LCVICLEQE-------------YNAVFFPCGHLCCCLICSSRL----TNCPLCR 332 (344)
Q Consensus 296 ~C~iC~~~~-------------~~~~~~pCgH~~~C~~C~~~~----~~CP~CR 332 (344)
.|.||++.. ..++..+|||.| ...|+.+. ..||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~F-H~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIF-HFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEE-EHHHHHHHHTTSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCE-EHHHHHHHHhcCCcCCCCC
Confidence 599998854 334566999999 89999764 6899998
No 37
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.00084 Score=68.23 Aligned_cols=44 Identities=34% Similarity=0.822 Sum_probs=36.9
Q ss_pred Cccccccccccccccc-----eEEecCCCcccccchhhCC----CCCccccccc
Q 019204 291 RVMPDLCVICLEQEYN-----AVFFPCGHLCCCLICSSRL----TNCPLCRRRI 335 (344)
Q Consensus 291 ~~~~~~C~iC~~~~~~-----~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i 335 (344)
......|.||.+.-.. ...+||||.+ |..|.... +.||+||..+
T Consensus 288 ~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hif-h~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 288 ALSDELCIICLEELHSGHNITPKRLPCGHIF-HDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred hhcCCeeeeechhhccccccccceeecccch-HHHHHHHHHHHhCcCCcchhhh
Confidence 3345699999997777 7889999999 99999875 7999999843
No 38
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.00021 Score=66.25 Aligned_cols=40 Identities=43% Similarity=0.932 Sum_probs=35.3
Q ss_pred cccccccccccccceEEecCCCcccccchhhCC----CCCccccc
Q 019204 293 MPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL----TNCPLCRR 333 (344)
Q Consensus 293 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~CR~ 333 (344)
....|.||++......++||||.+ |..|+... -.||.||.
T Consensus 12 ~~~~C~iC~~~~~~p~~l~C~H~~-c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 12 EELTCPICLEYFREPVLLPCGHNF-CRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccChhhHHHhhcCccccccchH-hHHHHHHhcCCCcCCcccCC
Confidence 346899999999999999999999 99999875 48999994
No 39
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=96.93 E-value=0.00037 Score=49.01 Aligned_cols=40 Identities=28% Similarity=0.708 Sum_probs=22.5
Q ss_pred cccccccccccceE-EecCCCcccccchhhCC--CCCccccccc
Q 019204 295 DLCVICLEQEYNAV-FFPCGHLCCCLICSSRL--TNCPLCRRRI 335 (344)
Q Consensus 295 ~~C~iC~~~~~~~~-~~pCgH~~~C~~C~~~~--~~CP~CR~~i 335 (344)
..|.+|.+--+..+ +..|.|.| |..|+..- ..||+|+.+-
T Consensus 8 LrCs~C~~~l~~pv~l~~CeH~f-Cs~Ci~~~~~~~CPvC~~Pa 50 (65)
T PF14835_consen 8 LRCSICFDILKEPVCLGGCEHIF-CSSCIRDCIGSECPVCHTPA 50 (65)
T ss_dssp TS-SSS-S--SS-B---SSS--B--TTTGGGGTTTB-SSS--B-
T ss_pred cCCcHHHHHhcCCceeccCccHH-HHHHhHHhcCCCCCCcCChH
Confidence 47999999988886 56999999 99999875 6899999874
No 40
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=96.61 E-value=0.00096 Score=48.95 Aligned_cols=44 Identities=25% Similarity=0.319 Sum_probs=33.8
Q ss_pred cccccccccccccceEEecCCCcccccchhhCC-----CCCccccccccc
Q 019204 293 MPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL-----TNCPLCRRRIDQ 337 (344)
Q Consensus 293 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~CR~~i~~ 337 (344)
+...|+||.+-..+.+++||||.+ +..|..+. ..||+|++++..
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~ty-er~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHTY-ERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEEE-EHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred cccCCcCcCcHhhCceeCCcCCEE-cHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 356899999999999999999999 99998763 579999998865
No 41
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.00021 Score=66.46 Aligned_cols=44 Identities=27% Similarity=0.664 Sum_probs=36.2
Q ss_pred ccccccccccccceEEe-cCCCcccccchhhCC-----CCCccccccccce
Q 019204 294 PDLCVICLEQEYNAVFF-PCGHLCCCLICSSRL-----TNCPLCRRRIDQV 338 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~-----~~CP~CR~~i~~~ 338 (344)
...|.||++--+..+.. .|+|.| |.+|+... ..||.||+...+.
T Consensus 43 ~v~c~icl~llk~tmttkeClhrf-c~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 43 QVICPICLSLLKKTMTTKECLHRF-CFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred hhccHHHHHHHHhhcccHHHHHHH-HHHHHHHHHHhcCCCCchHHhhcccc
Confidence 45899999987776655 599999 99999863 6899999987653
No 42
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.39 E-value=0.00097 Score=57.18 Aligned_cols=45 Identities=31% Similarity=0.710 Sum_probs=38.5
Q ss_pred ccccccccccccccceEEecCCCcccccchhhCC----CCCccccccccc
Q 019204 292 VMPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQ 337 (344)
Q Consensus 292 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~ 337 (344)
.-+..|.||.......++..|||.| |..|+..- +.|-+|...--+
T Consensus 194 ~IPF~C~iCKkdy~spvvt~CGH~F-C~~Cai~~y~kg~~C~~Cgk~t~G 242 (259)
T COG5152 194 KIPFLCGICKKDYESPVVTECGHSF-CSLCAIRKYQKGDECGVCGKATYG 242 (259)
T ss_pred CCceeehhchhhccchhhhhcchhH-HHHHHHHHhccCCcceecchhhcc
Confidence 3467999999999999999999999 99998763 689999876543
No 43
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.00085 Score=64.94 Aligned_cols=43 Identities=30% Similarity=0.722 Sum_probs=34.8
Q ss_pred ccccccccc-----------------cccceEEecCCCcccccchhhCC----C-CCccccccccc
Q 019204 294 PDLCVICLE-----------------QEYNAVFFPCGHLCCCLICSSRL----T-NCPLCRRRIDQ 337 (344)
Q Consensus 294 ~~~C~iC~~-----------------~~~~~~~~pCgH~~~C~~C~~~~----~-~CP~CR~~i~~ 337 (344)
...|+||+. ..++.+++||.|++ -..|..+. + .||+||+++..
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~Hif-H~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIF-HRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccchHHHH-HHHHHHHHHhhhcccCCccCCCCCC
Confidence 458999998 23567888999999 89999774 3 89999998753
No 44
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.002 Score=58.76 Aligned_cols=48 Identities=27% Similarity=0.700 Sum_probs=41.1
Q ss_pred CCccccccccccccccceEEecCCCcccccchhhCC----CCCccccccccce
Q 019204 290 DRVMPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQV 338 (344)
Q Consensus 290 ~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~~ 338 (344)
....+..|-||.....+.+...|||.| |..|+..- ..|++|.+.+.++
T Consensus 237 ~~~~Pf~c~icr~~f~~pVvt~c~h~f-c~~ca~~~~qk~~~c~vC~~~t~g~ 288 (313)
T KOG1813|consen 237 IELLPFKCFICRKYFYRPVVTKCGHYF-CEVCALKPYQKGEKCYVCSQQTHGS 288 (313)
T ss_pred cccCCccccccccccccchhhcCCcee-ehhhhccccccCCcceecccccccc
Confidence 344567899999999999999999999 99999763 6899999988664
No 45
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.0019 Score=62.48 Aligned_cols=45 Identities=40% Similarity=0.868 Sum_probs=38.3
Q ss_pred ccccccccccccccceEEecCCCcccccchhhCC----CCCccccccccc
Q 019204 292 VMPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQ 337 (344)
Q Consensus 292 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~ 337 (344)
..+..|.||+...-..+.+||||.+ |..|..+. ..||.||..+..
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs~-c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHSF-CLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCccccccccc-cHHHHHHHhccCCCCccccccccc
Confidence 4567999999999999999999999 99996553 689999987754
No 46
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.019 Score=51.98 Aligned_cols=47 Identities=26% Similarity=0.686 Sum_probs=37.7
Q ss_pred CccccccccccccccceEEe-cCCCcccccchhhCC------CCCccccccccce
Q 019204 291 RVMPDLCVICLEQEYNAVFF-PCGHLCCCLICSSRL------TNCPLCRRRIDQV 338 (344)
Q Consensus 291 ~~~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~------~~CP~CR~~i~~~ 338 (344)
.....+|++|-+.|..+... ||||.+ |+-|+... -.||.|..++...
T Consensus 236 ~t~~~~C~~Cg~~PtiP~~~~~C~Hiy-CY~Ci~ts~~~~asf~Cp~Cg~~~~~l 289 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIPHVIGKCGHIY-CYYCIATSRLWDASFTCPLCGENVEPL 289 (298)
T ss_pred ccCCceeeccCCCCCCCeeecccccee-ehhhhhhhhcchhhcccCccCCCCcch
Confidence 34456999999999887655 699999 99999874 3899999887643
No 47
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.0029 Score=59.97 Aligned_cols=46 Identities=33% Similarity=0.704 Sum_probs=37.2
Q ss_pred ccccccccccccceE-----E---ecCCCcccccchhhCC-----------CCCccccccccceEe
Q 019204 294 PDLCVICLEQEYNAV-----F---FPCGHLCCCLICSSRL-----------TNCPLCRRRIDQVVR 340 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~-----~---~pCgH~~~C~~C~~~~-----------~~CP~CR~~i~~~~~ 340 (344)
...|.||+++.-+.. | .+|.|.+ |-.|+... +.||.||.+...+.+
T Consensus 161 ~k~CGICme~i~ek~~~~~rfgilpnC~H~~-Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~p 225 (344)
T KOG1039|consen 161 EKECGICMETINEKAASERRFGILPNCNHSF-CLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNP 225 (344)
T ss_pred cccceehhhhccccchhhhhcccCCCcchhh-hhcHhHhhhhhhccccccccCCCcccCccccccc
Confidence 458999999776655 4 6899999 99998764 579999998876554
No 48
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.035 Score=51.48 Aligned_cols=52 Identities=23% Similarity=0.554 Sum_probs=36.8
Q ss_pred CCccccccccccccccceEEe-cCCCcccccchhhCC----CCCccccccc--cceEecc
Q 019204 290 DRVMPDLCVICLEQEYNAVFF-PCGHLCCCLICSSRL----TNCPLCRRRI--DQVVRTF 342 (344)
Q Consensus 290 ~~~~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~----~~CP~CR~~i--~~~~~i~ 342 (344)
...+...|++|+....|..++ --|-++ |+.|+... ..||+-..+. ...+++|
T Consensus 296 l~~~~~~CpvClk~r~Nptvl~vSGyVf-CY~Ci~~Yv~~~~~CPVT~~p~~v~~l~rl~ 354 (357)
T KOG0826|consen 296 LPPDREVCPVCLKKRQNPTVLEVSGYVF-CYPCIFSYVVNYGHCPVTGYPASVDHLIRLF 354 (357)
T ss_pred CCCccccChhHHhccCCCceEEecceEE-eHHHHHHHHHhcCCCCccCCcchHHHHHHHh
Confidence 344557999999877775554 459998 99998774 7899866544 3455544
No 49
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=95.13 E-value=0.0085 Score=55.93 Aligned_cols=42 Identities=33% Similarity=0.929 Sum_probs=35.5
Q ss_pred cccccccccccceEEecC--CCcccccchhhCC-CCCccccccccce
Q 019204 295 DLCVICLEQEYNAVFFPC--GHLCCCLICSSRL-TNCPLCRRRIDQV 338 (344)
Q Consensus 295 ~~C~iC~~~~~~~~~~pC--gH~~~C~~C~~~~-~~CP~CR~~i~~~ 338 (344)
..|+||.+.-.-.++ -| ||+. |..|...+ .+||.||.+|..+
T Consensus 49 leCPvC~~~l~~Pi~-QC~nGHla-CssC~~~~~~~CP~Cr~~~g~~ 93 (299)
T KOG3002|consen 49 LDCPVCFNPLSPPIF-QCDNGHLA-CSSCRTKVSNKCPTCRLPIGNI 93 (299)
T ss_pred ccCchhhccCcccce-ecCCCcEe-hhhhhhhhcccCCccccccccH
Confidence 489999998888777 55 7999 99999665 7999999999843
No 50
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.79 E-value=0.02 Score=55.18 Aligned_cols=39 Identities=28% Similarity=0.691 Sum_probs=30.6
Q ss_pred ccccccccccccc----eEEecCCCcccccchhhCC--CCCccccc
Q 019204 294 PDLCVICLEQEYN----AVFFPCGHLCCCLICSSRL--TNCPLCRR 333 (344)
Q Consensus 294 ~~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~--~~CP~CR~ 333 (344)
-..|+||+++.-. ++-.+|.|.|- ..|.... ..||+||-
T Consensus 175 LPTCpVCLERMD~s~~gi~t~~c~Hsfh-~~cl~~w~~~scpvcR~ 219 (493)
T KOG0804|consen 175 LPTCPVCLERMDSSTTGILTILCNHSFH-CSCLMKWWDSSCPVCRY 219 (493)
T ss_pred CCCcchhHhhcCccccceeeeecccccc-hHHHhhcccCcChhhhh
Confidence 3599999997654 24568999994 5888876 69999994
No 51
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=0.015 Score=52.44 Aligned_cols=46 Identities=24% Similarity=0.670 Sum_probs=35.0
Q ss_pred Ccccccccccccccc----------ceEEecCCCcccccchhhCC------CCCccccccccc
Q 019204 291 RVMPDLCVICLEQEY----------NAVFFPCGHLCCCLICSSRL------TNCPLCRRRIDQ 337 (344)
Q Consensus 291 ~~~~~~C~iC~~~~~----------~~~~~pCgH~~~C~~C~~~~------~~CP~CR~~i~~ 337 (344)
..+++.|.||-.+-- +.--+.|+|+| -+.|+... +.||-|+.+|+.
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvF-HEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVF-HEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeeecccch-HHHhhhhheeecCCCCCchHHHHhhH
Confidence 344679999965432 33457999999 89999874 799999998864
No 52
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.02 E-value=0.033 Score=51.20 Aligned_cols=46 Identities=17% Similarity=0.375 Sum_probs=36.7
Q ss_pred Cccccccccccccc----cceEEecCCCcccccchhhCCC---CCccccccccc
Q 019204 291 RVMPDLCVICLEQE----YNAVFFPCGHLCCCLICSSRLT---NCPLCRRRIDQ 337 (344)
Q Consensus 291 ~~~~~~C~iC~~~~----~~~~~~pCgH~~~C~~C~~~~~---~CP~CR~~i~~ 337 (344)
......|+|..... +-+.+.||||++ ++.++..+. .||+|-.++..
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~-s~~alke~k~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVF-SEKALKELKKSKKCPVCGKPFTE 162 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEe-eHHHHHhhcccccccccCCcccc
Confidence 34456999997643 456677999999 999999886 79999999764
No 53
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=93.94 E-value=0.021 Score=42.75 Aligned_cols=28 Identities=29% Similarity=0.729 Sum_probs=22.5
Q ss_pred EEecCCCcccccchhhCC-------CCCcccccccc
Q 019204 308 VFFPCGHLCCCLICSSRL-------TNCPLCRRRID 336 (344)
Q Consensus 308 ~~~pCgH~~~C~~C~~~~-------~~CP~CR~~i~ 336 (344)
++-.|+|.| ...|+.+. ..||+||++..
T Consensus 48 v~g~C~H~F-H~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 48 VWGKCSHNF-HMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred eeccCccHH-HHHHHHHHHccccCCCCCCCcCCeee
Confidence 455899999 89998653 58999999754
No 54
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.72 E-value=0.021 Score=59.14 Aligned_cols=40 Identities=33% Similarity=0.812 Sum_probs=35.0
Q ss_pred cccccccccccceEEecCCCcccccchhhCC------CCCcccccccc
Q 019204 295 DLCVICLEQEYNAVFFPCGHLCCCLICSSRL------TNCPLCRRRID 336 (344)
Q Consensus 295 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~------~~CP~CR~~i~ 336 (344)
..|.+|++ +..+++.+|||.+ |.+|.... ..||+||..+.
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~-c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDF-CVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc-cccceeecccchH-HHHHHHhccccccCCCCcHHHHHHH
Confidence 68999999 8889999999999 99998764 47999998764
No 55
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.65 E-value=0.022 Score=54.42 Aligned_cols=40 Identities=30% Similarity=0.671 Sum_probs=31.4
Q ss_pred ccccccccccc---cceEEecCCCcccccchhhCC------------CCCcccccc
Q 019204 294 PDLCVICLEQE---YNAVFFPCGHLCCCLICSSRL------------TNCPLCRRR 334 (344)
Q Consensus 294 ~~~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~------------~~CP~CR~~ 334 (344)
...|.||++.. ....++||+|++ |..|.... -+||-|...
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv~-Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHVF-CKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred cccceeeehhhcCcceeeecccchHH-HHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 46899999954 458899999999 99998763 378877643
No 56
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=93.33 E-value=0.025 Score=51.94 Aligned_cols=45 Identities=29% Similarity=0.684 Sum_probs=33.1
Q ss_pred ccccccccccccc-eEEecCCCcccccchhhCC--CCCccccccccceE
Q 019204 294 PDLCVICLEQEYN-AVFFPCGHLCCCLICSSRL--TNCPLCRRRIDQVV 339 (344)
Q Consensus 294 ~~~C~iC~~~~~~-~~~~pCgH~~~C~~C~~~~--~~CP~CR~~i~~~~ 339 (344)
-.-|.-|--.... --++||.|+| |.+|+..- +.||.|-.+|.++.
T Consensus 90 VHfCd~Cd~PI~IYGRmIPCkHvF-Cl~CAr~~~dK~Cp~C~d~VqrIe 137 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRMIPCKHVF-CLECARSDSDKICPLCDDRVQRIE 137 (389)
T ss_pred eEeecccCCcceeeecccccchhh-hhhhhhcCccccCcCcccHHHHHH
Confidence 4567777443322 3457999999 99999875 69999998887654
No 57
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=92.67 E-value=0.026 Score=57.82 Aligned_cols=45 Identities=22% Similarity=0.457 Sum_probs=32.8
Q ss_pred cccccccccccceEE---ecCCCcccccchhhCC----CCCccccccccceEe
Q 019204 295 DLCVICLEQEYNAVF---FPCGHLCCCLICSSRL----TNCPLCRRRIDQVVR 340 (344)
Q Consensus 295 ~~C~iC~~~~~~~~~---~pCgH~~~C~~C~~~~----~~CP~CR~~i~~~~~ 340 (344)
..|.+|+....+-.. .+|+|.| |..|+..+ +.||+||..+..++.
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~c~H~F-C~~Ci~sWsR~aqTCPiDR~EF~~v~V 175 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKHTAHYF-CEECVGSWSRCAQTCPVDRGEFGEVKV 175 (1134)
T ss_pred hhhhHHHHHHHHHhhcccccccccc-HHHHhhhhhhhcccCchhhhhhheeee
Confidence 367777664444222 4899999 99999886 699999988776543
No 58
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=92.58 E-value=0.066 Score=52.18 Aligned_cols=47 Identities=32% Similarity=0.663 Sum_probs=39.2
Q ss_pred ccccccccccccccceEE-ecCCCcccccchhhCC----CCCccccccccceE
Q 019204 292 VMPDLCVICLEQEYNAVF-FPCGHLCCCLICSSRL----TNCPLCRRRIDQVV 339 (344)
Q Consensus 292 ~~~~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~----~~CP~CR~~i~~~~ 339 (344)
+.+..|.+|...-.+.+- ..|||.| |..|.... +.||.|++.+....
T Consensus 19 ~~~l~C~~C~~vl~~p~~~~~cgh~f-C~~C~~~~~~~~~~cp~~~~~~~~~~ 70 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDPVQTTTCGHRF-CAGCLLESLSNHQKCPVCRQELTQAE 70 (391)
T ss_pred cccccCccccccccCCCCCCCCCCcc-cccccchhhccCcCCcccccccchhh
Confidence 345699999999999888 4999999 99999875 58999998876543
No 59
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=92.49 E-value=0.027 Score=37.51 Aligned_cols=38 Identities=34% Similarity=0.926 Sum_probs=16.5
Q ss_pred cccccccc--cceEEec--CCCcccccchhhCC-----CCCccccccc
Q 019204 297 CVICLEQE--YNAVFFP--CGHLCCCLICSSRL-----TNCPLCRRRI 335 (344)
Q Consensus 297 C~iC~~~~--~~~~~~p--CgH~~~C~~C~~~~-----~~CP~CR~~i 335 (344)
|++|.+.. ++..|.| ||+.. |..|...+ ..||-||++-
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~I-C~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQI-CRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS-----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcH-HHHHHHHHHhccCCCCCCCCCCC
Confidence 45565533 3344565 77888 99997654 5899999863
No 60
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=92.32 E-value=0.39 Score=37.39 Aligned_cols=29 Identities=31% Similarity=0.683 Sum_probs=22.1
Q ss_pred cccccccccccc--ceEEecCCCcccccchhh
Q 019204 294 PDLCVICLEQEY--NAVFFPCGHLCCCLICSS 323 (344)
Q Consensus 294 ~~~C~iC~~~~~--~~~~~pCgH~~~C~~C~~ 323 (344)
...|.+|...-. ..++.||||++ ...|..
T Consensus 78 ~~~C~vC~k~l~~~~f~~~p~~~v~-H~~C~~ 108 (109)
T PF10367_consen 78 STKCSVCGKPLGNSVFVVFPCGHVV-HYSCIK 108 (109)
T ss_pred CCCccCcCCcCCCceEEEeCCCeEE-eccccc
Confidence 457999977544 35556999999 888875
No 61
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.24 E-value=0.074 Score=47.46 Aligned_cols=42 Identities=21% Similarity=0.418 Sum_probs=33.6
Q ss_pred cccccccccc----cceEEecCCCcccccchhhCC----CCCccccccccc
Q 019204 295 DLCVICLEQE----YNAVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQ 337 (344)
Q Consensus 295 ~~C~iC~~~~----~~~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~ 337 (344)
..|++|.+.- ..+++-||||++ |.+|..++ ..||+|-.+...
T Consensus 222 yiCpvtrd~LtNt~~ca~Lr~sg~Vv-~~ecvEklir~D~v~pv~d~plkd 271 (303)
T KOG3039|consen 222 YICPVTRDTLTNTTPCAVLRPSGHVV-TKECVEKLIRKDMVDPVTDKPLKD 271 (303)
T ss_pred eecccchhhhcCccceEEeccCCcEe-eHHHHHHhccccccccCCCCcCcc
Confidence 5899998743 335667999999 99999886 589999987653
No 62
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=92.11 E-value=0.028 Score=55.23 Aligned_cols=41 Identities=22% Similarity=0.646 Sum_probs=35.2
Q ss_pred ccccccccccccceEEecCCCcccccchhhCC---------CCCccccccc
Q 019204 294 PDLCVICLEQEYNAVFFPCGHLCCCLICSSRL---------TNCPLCRRRI 335 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~---------~~CP~CR~~i 335 (344)
...|.+|.+...+.+...|-|.| |.-|.... ..||.|-...
T Consensus 536 ~~~C~lc~d~aed~i~s~ChH~F-CrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 536 EVECGLCHDPAEDYIESSCHHKF-CRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred ceeecccCChhhhhHhhhhhHHH-HHHHHHHHHHhhhcccCCCCccccccc
Confidence 45899999999999999999999 99998542 5899998543
No 63
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=90.13 E-value=0.087 Score=50.29 Aligned_cols=43 Identities=30% Similarity=0.799 Sum_probs=0.0
Q ss_pred ccccccccc-------------------cccceEEecCCCcccccchhh-----CC--------CCCccccccccc
Q 019204 294 PDLCVICLE-------------------QEYNAVFFPCGHLCCCLICSS-----RL--------TNCPLCRRRIDQ 337 (344)
Q Consensus 294 ~~~C~iC~~-------------------~~~~~~~~pCgH~~~C~~C~~-----~~--------~~CP~CR~~i~~ 337 (344)
...|++|+. .+...+|-||||++ =+..+. .+ ..||.|-.++..
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~-SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVC-SEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeeccccccc-chhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 568999986 33556788999997 233332 22 489999999875
No 64
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=89.94 E-value=0.12 Score=34.62 Aligned_cols=36 Identities=28% Similarity=0.796 Sum_probs=27.5
Q ss_pred ccccccc--cccceEEecCC-----CcccccchhhCC------CCCcccc
Q 019204 296 LCVICLE--QEYNAVFFPCG-----HLCCCLICSSRL------TNCPLCR 332 (344)
Q Consensus 296 ~C~iC~~--~~~~~~~~pCg-----H~~~C~~C~~~~------~~CP~CR 332 (344)
.|.||++ ...+..+.||. |.+ -..|..+. ..||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~v-H~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYV-HQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHH-HHHHHHHHHHHcCCCcCCCCC
Confidence 4889996 66677889996 555 78898764 4799995
No 65
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=89.90 E-value=0.12 Score=56.58 Aligned_cols=44 Identities=32% Similarity=0.945 Sum_probs=33.9
Q ss_pred cccccccccccc---cceEEecCCCcccccchhhCC--------------CCCccccccccc
Q 019204 293 MPDLCVICLEQE---YNAVFFPCGHLCCCLICSSRL--------------TNCPLCRRRIDQ 337 (344)
Q Consensus 293 ~~~~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~--------------~~CP~CR~~i~~ 337 (344)
.++.|+||+... .-++-+.|+|+| -..|...+ -.||+|.++|.-
T Consensus 3485 ~DDmCmICFTE~L~AAP~IqL~C~HiF-HlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQLDCSHIF-HLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred cCceEEEEehhhhCCCcceecCCccch-hHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 356999999855 346678999999 67776542 479999999875
No 66
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=89.04 E-value=0.11 Score=42.09 Aligned_cols=45 Identities=29% Similarity=0.659 Sum_probs=37.3
Q ss_pred ccccccccccccceEEe----cCCCcccccchhhCC-------CCCccccccccceE
Q 019204 294 PDLCVICLEQEYNAVFF----PCGHLCCCLICSSRL-------TNCPLCRRRIDQVV 339 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~----pCgH~~~C~~C~~~~-------~~CP~CR~~i~~~~ 339 (344)
-.+|-||.+...+-.|+ =||-.. |..|...+ +.||+|+.+..+.-
T Consensus 80 lYeCnIC~etS~ee~FLKPneCCgY~i-Cn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 80 LYECNICKETSAEERFLKPNECCGYSI-CNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred ceeccCcccccchhhcCCcccccchHH-HHHHHHHHHHHcccCCCCCcccccccccc
Confidence 35899999999998887 388776 99998775 79999999887654
No 67
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=88.61 E-value=0.12 Score=54.26 Aligned_cols=41 Identities=29% Similarity=0.629 Sum_probs=29.5
Q ss_pred cccccccccc-------cceEEecCCCcccccchhhCC------CCCcccccccc
Q 019204 295 DLCVICLEQE-------YNAVFFPCGHLCCCLICSSRL------TNCPLCRRRID 336 (344)
Q Consensus 295 ~~C~iC~~~~-------~~~~~~pCgH~~~C~~C~~~~------~~CP~CR~~i~ 336 (344)
.+|+|||.-- .+-..-.|.|-| ...|..+. .+||+||..|+
T Consensus 1470 eECaICYsvL~~vdr~lPskrC~TCknKF-H~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1470 EECAICYSVLDMVDRSLPSKRCATCKNKF-HTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred chhhHHHHHHHHHhccCCccccchhhhhh-hHHHHHHHHHhcCCCCCCccccccc
Confidence 4899999721 112223488998 78998764 68999998875
No 68
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=87.69 E-value=0.087 Score=49.08 Aligned_cols=46 Identities=24% Similarity=0.482 Sum_probs=37.6
Q ss_pred ccccccccccccceEEe-cCCCcccccchhhCC----CCCccccccccceEe
Q 019204 294 PDLCVICLEQEYNAVFF-PCGHLCCCLICSSRL----TNCPLCRRRIDQVVR 340 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~----~~CP~CR~~i~~~~~ 340 (344)
...|.+|-.-..++..+ -|-|.| |.+|+.+. ..||.|...|-...+
T Consensus 15 ~itC~LC~GYliDATTI~eCLHTF-CkSCivk~l~~~~~CP~C~i~ih~t~p 65 (331)
T KOG2660|consen 15 HITCRLCGGYLIDATTITECLHTF-CKSCIVKYLEESKYCPTCDIVIHKTHP 65 (331)
T ss_pred ceehhhccceeecchhHHHHHHHH-HHHHHHHHHHHhccCCccceeccCccc
Confidence 34899998887776654 699999 99999874 789999998877654
No 69
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=87.49 E-value=0.18 Score=47.11 Aligned_cols=41 Identities=41% Similarity=1.086 Sum_probs=30.2
Q ss_pred ccccccccccc--ceEEe--cCCCcccccchhhCC-----CCCcccccccc
Q 019204 295 DLCVICLEQEY--NAVFF--PCGHLCCCLICSSRL-----TNCPLCRRRID 336 (344)
Q Consensus 295 ~~C~iC~~~~~--~~~~~--pCgH~~~C~~C~~~~-----~~CP~CR~~i~ 336 (344)
+.|+.|++... +--|. |||-.. |.-|...+ .+||-||+..+
T Consensus 15 d~cplcie~mditdknf~pc~cgy~i-c~fc~~~irq~lngrcpacrr~y~ 64 (480)
T COG5175 15 DYCPLCIEPMDITDKNFFPCPCGYQI-CQFCYNNIRQNLNGRCPACRRKYD 64 (480)
T ss_pred ccCcccccccccccCCcccCCcccHH-HHHHHHHHHhhccCCChHhhhhcc
Confidence 46999999542 33455 567777 99998765 59999998764
No 70
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=87.21 E-value=0.29 Score=45.26 Aligned_cols=44 Identities=27% Similarity=0.685 Sum_probs=28.6
Q ss_pred cccccccccc-------------------cccceEEecCCCcccccchhh-----CC--------CCCccccccccc
Q 019204 293 MPDLCVICLE-------------------QEYNAVFFPCGHLCCCLICSS-----RL--------TNCPLCRRRIDQ 337 (344)
Q Consensus 293 ~~~~C~iC~~-------------------~~~~~~~~pCgH~~~C~~C~~-----~~--------~~CP~CR~~i~~ 337 (344)
....|++|+. .+..-.|-||||+|. +.=.. .+ ..||.|-+....
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~s-ekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCS-EKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccc-hhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 3468999987 234456789999972 21110 11 479999987764
No 71
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=86.43 E-value=0.57 Score=43.41 Aligned_cols=48 Identities=6% Similarity=-0.154 Sum_probs=41.7
Q ss_pred ccccccccccccceEEecCCCcccccchhhCC--CCCccccccccceEec
Q 019204 294 PDLCVICLEQEYNAVFFPCGHLCCCLICSSRL--TNCPLCRRRIDQVVRT 341 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~--~~CP~CR~~i~~~~~i 341 (344)
...|.+|-.+-...++.||||...|.+|+... +.||.|.-.+-..++|
T Consensus 343 ~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~s~~~~~~~c~~~~~~~~~i 392 (394)
T KOG2113|consen 343 SLKGTSAGFGLLSTIWSGGNMNLSPGSLASASASPTSSTCDHNDHTLVPI 392 (394)
T ss_pred hcccccccCceeeeEeecCCcccChhhhhhcccCCccccccccceeeeec
Confidence 45899999999999999999999999999864 7999999877766665
No 72
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=84.80 E-value=0.31 Score=44.77 Aligned_cols=38 Identities=34% Similarity=0.709 Sum_probs=31.5
Q ss_pred cccccccccccceEEec-CCCcccccchhhCC-----CCCccccc
Q 019204 295 DLCVICLEQEYNAVFFP-CGHLCCCLICSSRL-----TNCPLCRR 333 (344)
Q Consensus 295 ~~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~~-----~~CP~CR~ 333 (344)
..|+.|..-.++.+=+| |+|.| |.+|+... -.||.|-.
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~f-c~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTF-CDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchH-HHHHHhhhhhhccccCCCccc
Confidence 68999988877777774 88999 99999752 58999986
No 73
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=84.57 E-value=2.2 Score=34.16 Aligned_cols=40 Identities=23% Similarity=0.592 Sum_probs=26.8
Q ss_pred cccccccccc-----ccceEEecCCCcccccchhhCCC-----CCcccccc
Q 019204 294 PDLCVICLEQ-----EYNAVFFPCGHLCCCLICSSRLT-----NCPLCRRR 334 (344)
Q Consensus 294 ~~~C~iC~~~-----~~~~~~~pCgH~~~C~~C~~~~~-----~CP~CR~~ 334 (344)
...|..|... ........|+|.+ |..|....+ .|.+|...
T Consensus 54 ~~~C~~C~~~fg~l~~~~~~C~~C~~~V-C~~C~~~~~~~~~WlC~vC~k~ 103 (118)
T PF02318_consen 54 ERHCARCGKPFGFLFNRGRVCVDCKHRV-CKKCGVYSKKEPIWLCKVCQKQ 103 (118)
T ss_dssp CSB-TTTS-BCSCTSTTCEEETTTTEEE-ETTSEEETSSSCCEEEHHHHHH
T ss_pred CcchhhhCCcccccCCCCCcCCcCCccc-cCccCCcCCCCCCEEChhhHHH
Confidence 4589999774 2345667888888 899976541 58888753
No 74
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=82.86 E-value=0.23 Score=44.23 Aligned_cols=39 Identities=28% Similarity=0.792 Sum_probs=28.3
Q ss_pred ccccccccccc---cceEEe--c-CCCcccccchhhCC-----CCCc--cccc
Q 019204 294 PDLCVICLEQE---YNAVFF--P-CGHLCCCLICSSRL-----TNCP--LCRR 333 (344)
Q Consensus 294 ~~~C~iC~~~~---~~~~~~--p-CgH~~~C~~C~~~~-----~~CP--~CR~ 333 (344)
+..|++|..-. .++.++ | |-|.. |.+|..++ ..|| -|.+
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrm-CESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRM-CESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHH-HHHHHHHHhcCCCCCCCCccHHH
Confidence 35899997621 233333 6 99999 99999886 4899 7864
No 75
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=82.11 E-value=0.91 Score=43.50 Aligned_cols=18 Identities=17% Similarity=0.462 Sum_probs=14.3
Q ss_pred cccccccccccccceEEe
Q 019204 293 MPDLCVICLEQEYNAVFF 310 (344)
Q Consensus 293 ~~~~C~iC~~~~~~~~~~ 310 (344)
+...|.-|+....++.+.
T Consensus 270 e~e~CigC~~~~~~vkl~ 287 (358)
T PF10272_consen 270 ELEPCIGCMQAQPNVKLV 287 (358)
T ss_pred ccCCccccccCCCCcEEE
Confidence 345799999988888776
No 76
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=81.39 E-value=0.64 Score=32.24 Aligned_cols=37 Identities=24% Similarity=0.377 Sum_probs=24.5
Q ss_pred cccccccccccccceEEe-cCCCcccccchhhCC------CCCcc
Q 019204 293 MPDLCVICLEQEYNAVFF-PCGHLCCCLICSSRL------TNCPL 330 (344)
Q Consensus 293 ~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~------~~CP~ 330 (344)
....|+|.+....+.+-- .|||.| ..+.+..+ ..||+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~f-ek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTF-EKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EE-EHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCCcCcCCCCCee-cHHHHHHHHHhcCCCCCCC
Confidence 356899999999998875 899999 78877654 37998
No 77
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=81.37 E-value=0.5 Score=31.14 Aligned_cols=43 Identities=21% Similarity=0.621 Sum_probs=23.5
Q ss_pred cccccccccccceEEecCCCcccccchhhCC----CCCccccccccceE
Q 019204 295 DLCVICLEQEYNAVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQVV 339 (344)
Q Consensus 295 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~~~ 339 (344)
..|.-|.-..+..+ .|.--.+|..|...| ..||+|..+....+
T Consensus 3 ~nCKsCWf~~k~Li--~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtki 49 (50)
T PF03854_consen 3 YNCKSCWFANKGLI--KCSDHYLCLNCLTLMLSRSDRCPICGKPLPTKI 49 (50)
T ss_dssp ----SS-S--SSEE--E-SS-EEEHHHHHHT-SSSSEETTTTEE----S
T ss_pred ccChhhhhcCCCee--eecchhHHHHHHHHHhccccCCCcccCcCcccc
Confidence 35788876666544 588666699999876 58999999876544
No 78
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.37 E-value=4.2 Score=38.61 Aligned_cols=61 Identities=15% Similarity=0.035 Sum_probs=45.6
Q ss_pred eeeEEEEeccccCCceeEEeeeEEecCCCceEEecCCCCceEeccCCHHHHHHHhhhhhHHHH
Q 019204 163 MLGVKRIGRLLPTGTSLTVVGEAVKDDIGTVRIQRPHKGPFYVSPKTIDELLENLGKWARWYK 225 (344)
Q Consensus 163 ~~g~r~~E~~L~~G~~l~vvGe~~~d~~g~~~i~~p~~~~f~ls~~~~~~L~~~l~~~ar~~~ 225 (344)
+.|-+|.+... +++-++-+|-+... .+-..+.-...++|+||....|..+++.++..+..+
T Consensus 209 ~~g~~~v~~s~-~d~LIsr~g~~s~~-~kv~~~~~~~~~~ills~~~~d~~led~r~~r~~l~ 269 (355)
T KOG1571|consen 209 MQGPLYVTKSA-ADRLISREGDLSFF-VKVNGMVFGTLGVILLSFIVKDNYLEDDRRQRRELV 269 (355)
T ss_pred ccCcceeeccc-hhhHHHhhccceee-eeecceeeeeeeEEeehHHHHHHHHHHHHHHHHHHH
Confidence 35788999988 99999999987654 344444455567899999999999988776665543
No 79
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=77.86 E-value=1 Score=33.14 Aligned_cols=41 Identities=27% Similarity=0.387 Sum_probs=28.9
Q ss_pred cccccccc---cccce--EEecCCCcccccchhhCC----CCCcccccccc
Q 019204 295 DLCVICLE---QEYNA--VFFPCGHLCCCLICSSRL----TNCPLCRRRID 336 (344)
Q Consensus 295 ~~C~iC~~---~~~~~--~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~ 336 (344)
..|+-|.. +..++ +.--|.|.| -.-|+.+. ..||+||++..
T Consensus 32 ~~C~eCq~~~~~~~eC~v~wG~CnHaF-H~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 32 GTCPECQFGMTPGDECPVVWGVCNHAF-HDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred CcCcccccCCCCCCcceEEEEecchHH-HHHHHHHHHhhCCCCCCCCceeE
Confidence 36666655 33333 334799999 89998774 58999999754
No 80
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=77.59 E-value=0.57 Score=33.93 Aligned_cols=41 Identities=32% Similarity=0.679 Sum_probs=18.0
Q ss_pred ccccccccccc-c-----eEEe--cCCCcccccchhhCC---------------CCCcccccccc
Q 019204 295 DLCVICLEQEY-N-----AVFF--PCGHLCCCLICSSRL---------------TNCPLCRRRID 336 (344)
Q Consensus 295 ~~C~iC~~~~~-~-----~~~~--pCgH~~~C~~C~~~~---------------~~CP~CR~~i~ 336 (344)
..|.||++..- + .+-- .|++.+ -..|.... ..||.|+.+|.
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~f-H~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKF-HLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B--SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHH-HHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 47999998533 1 1111 577776 67786542 36999999986
No 81
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.72 E-value=0.78 Score=46.48 Aligned_cols=38 Identities=42% Similarity=0.877 Sum_probs=30.3
Q ss_pred ccccccccc----cccceEEecCCCcccccchhhCC--CCCccccc
Q 019204 294 PDLCVICLE----QEYNAVFFPCGHLCCCLICSSRL--TNCPLCRR 333 (344)
Q Consensus 294 ~~~C~iC~~----~~~~~~~~pCgH~~~C~~C~~~~--~~CP~CR~ 333 (344)
-..|.||+. .....+++-|||.. |..|...+ ..|| |..
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghti-c~~c~~~lyn~scp-~~~ 54 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTI-CGHCVQLLYNASCP-TKR 54 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchH-HHHHHHhHhhccCC-CCc
Confidence 347999965 45567888999999 99999987 6898 654
No 82
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=75.43 E-value=1.6 Score=41.81 Aligned_cols=43 Identities=28% Similarity=0.665 Sum_probs=33.1
Q ss_pred cccccccccc----cccceEEecCCCcccccchhhCC------CCCcccccccc
Q 019204 293 MPDLCVICLE----QEYNAVFFPCGHLCCCLICSSRL------TNCPLCRRRID 336 (344)
Q Consensus 293 ~~~~C~iC~~----~~~~~~~~pCgH~~~C~~C~~~~------~~CP~CR~~i~ 336 (344)
...-|-.|-+ .+.+.-.+||-|.| -..|...+ ..||-||+-+.
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIf-H~rCl~e~L~~n~~rsCP~CrklrS 416 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIF-HLRCLQEILENNGTRSCPNCRKLRS 416 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHH-HHHHHHHHHHhCCCCCCccHHHHHh
Confidence 4568999966 45556778999999 89998853 68999995444
No 83
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.13 E-value=1.2 Score=40.71 Aligned_cols=30 Identities=33% Similarity=0.790 Sum_probs=26.5
Q ss_pred ccccccccccccceEEecCC----CcccccchhhC
Q 019204 294 PDLCVICLEQEYNAVFFPCG----HLCCCLICSSR 324 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pCg----H~~~C~~C~~~ 324 (344)
+.-|.+|.++-.+..|+-|- |-| |+.|.+.
T Consensus 268 pLcCTLC~ERLEDTHFVQCPSVp~HKF-CFPCSRe 301 (352)
T KOG3579|consen 268 PLCCTLCHERLEDTHFVQCPSVPSHKF-CFPCSRE 301 (352)
T ss_pred ceeehhhhhhhccCceeecCCCcccce-ecccCHH
Confidence 35899999999999999885 888 9999876
No 84
>cd04488 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG. RecG is a branched-DNA-specific helicase, which catalyzes the interconversion of a DNA replication fork to a four-stranded (Holliday) junction in vivo and in vitro. This interconversion provides a route to repair stalled forks. The RecG monomer contains three domains. The N-terminal domain is named for its wedge structure, and may provide the specificity of RecG for binding branched-DNA structures. During the reversal of fork to Holliday junction, the wedge domain is fixed at the junction of the fork where the leading and lagging strand duplex arms meet, and is thought to promote the unwinding of the nascent leading and lagging strands. In order to form the Holliday junction, these nascent strands would be annealed, and the parental strands reannealed. The wedge domain may also be a processivity factor of RecG on these branched cha
Probab=72.11 E-value=8.1 Score=27.11 Aligned_cols=29 Identities=31% Similarity=0.535 Sum_probs=23.4
Q ss_pred eccccCCceeEEeeeEEecCCCceEEecCC
Q 019204 170 GRLLPTGTSLTVVGEAVKDDIGTVRIQRPH 199 (344)
Q Consensus 170 E~~L~~G~~l~vvGe~~~d~~g~~~i~~p~ 199 (344)
...+++|+.+++.|.+..- .|.+.|.+|.
T Consensus 43 ~~~~~~G~~~~v~Gkv~~~-~~~~qi~~P~ 71 (75)
T cd04488 43 KKQLPPGTRVRVSGKVKRF-RGGLQIVHPE 71 (75)
T ss_pred HhcCCCCCEEEEEEEEeec-CCeeEEeCCc
Confidence 4568999999999997654 6788888876
No 85
>PHA03096 p28-like protein; Provisional
Probab=71.89 E-value=1.1 Score=41.66 Aligned_cols=40 Identities=23% Similarity=0.392 Sum_probs=28.8
Q ss_pred cccccccccc--------cceEEecCCCcccccchhhCC----------CCCccccccc
Q 019204 295 DLCVICLEQE--------YNAVFFPCGHLCCCLICSSRL----------TNCPLCRRRI 335 (344)
Q Consensus 295 ~~C~iC~~~~--------~~~~~~pCgH~~~C~~C~~~~----------~~CP~CR~~i 335 (344)
-.|-||+++. +..++-.|.|.+ |-.|...+ +.||.|+..+
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~f-c~~ci~~wr~~~~~~e~~~~c~~~~~~~ 236 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEF-NIFCIKIWMTESLYKETEPENRRLNTVI 236 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHH-HHHHHHHHHHhhhhcccCccccchhhHH
Confidence 4799999844 345667899999 99998753 4566665544
No 86
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=71.03 E-value=0.84 Score=42.08 Aligned_cols=41 Identities=37% Similarity=0.777 Sum_probs=29.4
Q ss_pred ccccccccccc---ceEEecCCCcccccchhhCC---------------------------CCCcccccccc
Q 019204 295 DLCVICLEQEY---NAVFFPCGHLCCCLICSSRL---------------------------TNCPLCRRRID 336 (344)
Q Consensus 295 ~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~~---------------------------~~CP~CR~~i~ 336 (344)
..|+||+-... ..+.++|-|.+ -..|..+. ..||+||..|.
T Consensus 116 gqCvICLygfa~~~~ft~T~C~Hy~-H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 116 GQCVICLYGFASSPAFTVTACDHYM-HFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CceEEEEEeecCCCceeeehhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 47888866443 36677999998 55776541 36999998885
No 87
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.32 E-value=4.4 Score=42.63 Aligned_cols=47 Identities=26% Similarity=0.491 Sum_probs=33.7
Q ss_pred cccccccccc-cceEEecCCCcccccchhhC-CCCCccccccccceEecc
Q 019204 295 DLCVICLEQE-YNAVFFPCGHLCCCLICSSR-LTNCPLCRRRIDQVVRTF 342 (344)
Q Consensus 295 ~~C~iC~~~~-~~~~~~pCgH~~~C~~C~~~-~~~CP~CR~~i~~~~~i~ 342 (344)
..|..|-..- --.|...|||.+ ...|... ...||-|+....++...+
T Consensus 841 skCs~C~~~LdlP~VhF~CgHsy-HqhC~e~~~~~CP~C~~e~~~~m~l~ 889 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFVHFLCGHSY-HQHCLEDKEDKCPKCLPELRGVMDLK 889 (933)
T ss_pred eeecccCCccccceeeeecccHH-HHHhhccCcccCCccchhhhhhHHHH
Confidence 5899995533 335566899999 7889874 479999998655544433
No 88
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=70.07 E-value=2 Score=39.92 Aligned_cols=48 Identities=13% Similarity=0.265 Sum_probs=39.1
Q ss_pred ccccccccccccceEEecCCCcccccchhhCC-----CCCccccccccceEec
Q 019204 294 PDLCVICLEQEYNAVFFPCGHLCCCLICSSRL-----TNCPLCRRRIDQVVRT 341 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~CR~~i~~~~~i 341 (344)
...|++|+++..-+...+|+|-..|..|.... ..||+|-..+.+...|
T Consensus 136 ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ra~~i 188 (394)
T KOG2113|consen 136 TIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVTRAGQI 188 (394)
T ss_pred ccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhhhhhcc
Confidence 45899999999999999999999999996654 4699998766654443
No 89
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=69.57 E-value=0.71 Score=33.66 Aligned_cols=40 Identities=23% Similarity=0.511 Sum_probs=27.2
Q ss_pred ccccccccccceEEe--cCCCcccccchhhCC-------CCCcccccccc
Q 019204 296 LCVICLEQEYNAVFF--PCGHLCCCLICSSRL-------TNCPLCRRRID 336 (344)
Q Consensus 296 ~C~iC~~~~~~~~~~--pCgH~~~C~~C~~~~-------~~CP~CR~~i~ 336 (344)
.|+-|.-..-++-++ -|.|.| -.-|+.+. ..||+||+...
T Consensus 33 ~Cp~Ck~PgDdCPLv~G~C~h~f-h~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 33 CCPDCKLPGDDCPLVWGYCLHAF-HAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred cCCCCcCCCCCCccHHHHHHHHH-HHHHHHHHhcCccccccCCcchheeE
Confidence 455555554444333 699998 78898763 47999998753
No 90
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=67.87 E-value=1.6 Score=35.73 Aligned_cols=30 Identities=30% Similarity=0.686 Sum_probs=24.4
Q ss_pred cccccccccccc---eEEecCC------CcccccchhhCC
Q 019204 295 DLCVICLEQEYN---AVFFPCG------HLCCCLICSSRL 325 (344)
Q Consensus 295 ~~C~iC~~~~~~---~~~~pCg------H~~~C~~C~~~~ 325 (344)
.+|.||+++-.+ ++.++|| |++ |.+|..+.
T Consensus 27 ~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmf-c~~C~~rw 65 (134)
T PF05883_consen 27 VECQICFDRIDNNDGVVYVTDGGTLNLEKMF-CADCDKRW 65 (134)
T ss_pred eeehhhhhhhhcCCCEEEEecCCeehHHHHH-HHHHHHHH
Confidence 589999996655 7778888 777 99998875
No 91
>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands. The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See IPR004364 from INTERPRO). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule 6.1.1 from EC. This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.; GO: 0003676 nucleic acid binding; PDB: 1BBU_A 1KRS_A 1BBW_A 1KRT_A 1EQR_B 1IL2_B 1C0A_A 3KFU_A 1EOV_A 1ASY_A ....
Probab=67.29 E-value=6.7 Score=27.75 Aligned_cols=58 Identities=33% Similarity=0.446 Sum_probs=37.3
Q ss_pred eecccEEeEEEECCceEEEEecCCCCccceeeeeeeeeecCcccccccccccccceeeeeEEEEeccccCCceeEEeeeE
Q 019204 106 LSMSKEVPWYLDDGTGCVFVVGARGATGFALTVGSEVFEESGRSLVHGTLDYLQGLKMLGVKRIGRLLPTGTSLTVVGEA 185 (344)
Q Consensus 106 ~~~~~~vpF~L~D~tg~v~V~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~r~~E~~L~~G~~l~vvGe~ 185 (344)
..+..-.-|.|+|+||.+.+. + |... +...-+.|.+|+.+.+.|.+
T Consensus 12 ~~~~~~~~~~l~D~tg~i~~~-------~--------~~~~-------------------~~~~~~~l~~g~~v~v~G~v 57 (75)
T PF01336_consen 12 RSGGKIVFFTLEDGTGSIQVV-------F--------FNEE-------------------YERFREKLKEGDIVRVRGKV 57 (75)
T ss_dssp EEETTEEEEEEEETTEEEEEE-------E--------ETHH-------------------HHHHHHTS-TTSEEEEEEEE
T ss_pred cCCCCEEEEEEEECCccEEEE-------E--------ccHH-------------------hhHHhhcCCCCeEEEEEEEE
Confidence 455566678899999988776 1 1100 01111458899999999998
Q ss_pred EecCCCceEEec
Q 019204 186 VKDDIGTVRIQR 197 (344)
Q Consensus 186 ~~d~~g~~~i~~ 197 (344)
..++++.+.|..
T Consensus 58 ~~~~~~~~~l~~ 69 (75)
T PF01336_consen 58 KRYNGGELELIV 69 (75)
T ss_dssp EEETTSSEEEEE
T ss_pred EEECCccEEEEE
Confidence 887555466543
No 92
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=64.85 E-value=1.8 Score=44.71 Aligned_cols=42 Identities=31% Similarity=0.788 Sum_probs=35.9
Q ss_pred cccccccccccceEEecCCCcccccchhhCC-------CCCccccccccc
Q 019204 295 DLCVICLEQEYNAVFFPCGHLCCCLICSSRL-------TNCPLCRRRIDQ 337 (344)
Q Consensus 295 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-------~~CP~CR~~i~~ 337 (344)
..|.||.......+.+.|.|.+ |..|.... ..||+|+..++.
T Consensus 22 lEc~ic~~~~~~p~~~kc~~~~-l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 22 LECPICLEHVKEPSLLKCDHIF-LKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred ccCCceeEEeeccchhhhhHHH-HhhhhhceeeccCccccchhhhhhhhh
Confidence 4799999999888999999999 99998764 479999976653
No 93
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.04 E-value=11 Score=30.61 Aligned_cols=39 Identities=36% Similarity=0.893 Sum_probs=24.5
Q ss_pred ccccccccccccceEEecCCCcc------cccchhhCC--------CCCccccccc
Q 019204 294 PDLCVICLEQEYNAVFFPCGHLC------CCLICSSRL--------TNCPLCRRRI 335 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pCgH~~------~C~~C~~~~--------~~CP~CR~~i 335 (344)
+..|-||....- .--|||.| +|..|.-+. -.|-.|+...
T Consensus 65 datC~IC~KTKF---ADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q 117 (169)
T KOG3799|consen 65 DATCGICHKTKF---ADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQ 117 (169)
T ss_pred Ccchhhhhhccc---ccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHHH
Confidence 458999986432 23588886 366664332 2588887654
No 94
>PLN02189 cellulose synthase
Probab=60.36 E-value=5.2 Score=43.37 Aligned_cols=43 Identities=28% Similarity=0.736 Sum_probs=29.8
Q ss_pred cccccccccc----ccceEEecCC---CcccccchhhC-----CCCCccccccccc
Q 019204 294 PDLCVICLEQ----EYNAVFFPCG---HLCCCLICSSR-----LTNCPLCRRRIDQ 337 (344)
Q Consensus 294 ~~~C~iC~~~----~~~~~~~pCg---H~~~C~~C~~~-----~~~CP~CR~~i~~ 337 (344)
...|.||-|. ...-.|+.|. -- .|..|+.- -+.||.|++...+
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fp-vCr~Cyeyer~eg~q~CpqCkt~Y~r 88 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFP-VCRPCYEYERREGTQNCPQCKTRYKR 88 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCc-cccchhhhhhhcCCccCcccCCchhh
Confidence 4589999986 3333566664 22 59999853 2689999987653
No 95
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=56.30 E-value=76 Score=24.00 Aligned_cols=25 Identities=12% Similarity=0.115 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019204 237 FLIAKRVIRCILQRKRRWELRRRVL 261 (344)
Q Consensus 237 ~ll~~~~~r~~~~~r~~~~~~~~~~ 261 (344)
.++++..++..+.+++..+++.+.+
T Consensus 16 ~i~~y~~~k~~ka~~~~~kL~~en~ 40 (87)
T PF10883_consen 16 LILAYLWWKVKKAKKQNAKLQKENE 40 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555665555444434443333
No 96
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=55.68 E-value=2.5 Score=39.01 Aligned_cols=45 Identities=29% Similarity=0.644 Sum_probs=33.7
Q ss_pred cccccccc----ccceEEecCCCcccccchhhCC----CCCccccccccceEecc
Q 019204 296 LCVICLEQ----EYNAVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQVVRTF 342 (344)
Q Consensus 296 ~C~iC~~~----~~~~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~~~~i~ 342 (344)
.|++|.+. ...+..++|||.-- ..|...+ -.||+|.. +.....+|
T Consensus 160 ncPic~e~l~~s~~~~~~~~CgH~~h-~~cf~e~~~~~y~CP~C~~-~~d~~~~~ 212 (276)
T KOG1940|consen 160 NCPICKEYLFLSFEDAGVLKCGHYMH-SRCFEEMICEGYTCPICSK-PGDMSHYF 212 (276)
T ss_pred CCchhHHHhccccccCCccCcccchH-HHHHHHHhccCCCCCcccc-hHHHHHHH
Confidence 49999773 45577889999984 7887765 48999999 76655544
No 97
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=54.73 E-value=5.3 Score=37.68 Aligned_cols=26 Identities=27% Similarity=0.682 Sum_probs=17.0
Q ss_pred ccccccccccccccceEEecCCCcccccch
Q 019204 292 VMPDLCVICLEQEYNAVFFPCGHLCCCLIC 321 (344)
Q Consensus 292 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C 321 (344)
..+.+|++|-|...-..+ |-+- |++|
T Consensus 13 dl~ElCPVCGDkVSGYHY---GLLT-CESC 38 (475)
T KOG4218|consen 13 DLGELCPVCGDKVSGYHY---GLLT-CESC 38 (475)
T ss_pred ccccccccccCcccccee---eeee-hhhh
Confidence 345699999998876554 3333 5555
No 98
>PF14880 COX14: Cytochrome oxidase c assembly
Probab=52.85 E-value=74 Score=21.98 Aligned_cols=34 Identities=24% Similarity=0.290 Sum_probs=19.9
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019204 222 RWYKYASFGLTIFGAFLIAKRVIRCILQRKRRWE 255 (344)
Q Consensus 222 r~~~~~~i~l~~~G~~ll~~~~~r~~~~~r~~~~ 255 (344)
|...+..+++++.|..++.+..+.++...+++++
T Consensus 15 R~tV~~Lig~T~~~g~~~~~~~y~~~~~~r~~~~ 48 (59)
T PF14880_consen 15 RTTVLGLIGFTVYGGGLTVYTVYSYFKYNRRRRA 48 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666767777776766655444433
No 99
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=51.92 E-value=4.8 Score=38.79 Aligned_cols=29 Identities=34% Similarity=0.733 Sum_probs=0.0
Q ss_pred ceEEecCCCcccccchhh------CCCCCcccccc
Q 019204 306 NAVFFPCGHLCCCLICSS------RLTNCPLCRRR 334 (344)
Q Consensus 306 ~~~~~pCgH~~~C~~C~~------~~~~CP~CR~~ 334 (344)
-.+++.|||+.--..-.. ....||+||+.
T Consensus 303 P~VYl~CGHVhG~h~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 303 PWVYLNCGHVHGYHNWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp -----------------------------------
T ss_pred ceeeccccceeeecccccccccccccccCCCcccc
Confidence 478999999874333321 13689999974
No 100
>PRK01844 hypothetical protein; Provisional
Probab=51.70 E-value=14 Score=26.79 Aligned_cols=36 Identities=14% Similarity=0.110 Sum_probs=21.2
Q ss_pred cchhhHHHHHHHHHHHHHhcchhhhHhhcccccccchh
Q 019204 3 SWGGISCCLSGAALYLLGRSSGRDAELLKTVTRVNQLE 40 (344)
Q Consensus 3 ~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 40 (344)
+++++++++++++.||+.|++- -+.|++-|+.+...
T Consensus 8 ~l~I~~li~G~~~Gff~ark~~--~k~lk~NPpine~m 43 (72)
T PRK01844 8 LVGVVALVAGVALGFFIARKYM--MNYLQKNPPINEQM 43 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHCCCCCHHH
Confidence 3455544444444576776644 35678888777544
No 101
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=51.42 E-value=11 Score=26.79 Aligned_cols=23 Identities=17% Similarity=0.057 Sum_probs=16.9
Q ss_pred cchhhHHHHHHHHHHHHHhcchh
Q 019204 3 SWGGISCCLSGAALYLLGRSSGR 25 (344)
Q Consensus 3 ~~g~~~~~~~~~~~~~~~~~~~~ 25 (344)
++.+++.++.|+++|-+|.+++.
T Consensus 6 iLi~ICVaii~lIlY~iYnr~~~ 28 (68)
T PF05961_consen 6 ILIIICVAIIGLILYGIYNRKKT 28 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhcccc
Confidence 45667678888888878877663
No 102
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=51.23 E-value=42 Score=21.44 Aligned_cols=23 Identities=26% Similarity=0.235 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 019204 230 GLTIFGAFLIAKRVIRCILQRKR 252 (344)
Q Consensus 230 ~l~~~G~~ll~~~~~r~~~~~r~ 252 (344)
..+.+|+.++.-..+|.|+.|++
T Consensus 16 lVglv~i~iva~~iYRKw~aRkr 38 (43)
T PF08114_consen 16 LVGLVGIGIVALFIYRKWQARKR 38 (43)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666667777765543
No 103
>cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit. E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a single-strand-specific exonuclease which degrades ssDNA from both 3-prime and 5-prime ends. ExoVII plays a role in methyl-directed mismatch repair in vivo. ExoVII may also guard the genome from mutagenesis by removing excess ssDNA, since the build up of ssDNA would lead to SOS induction and PolIV-dependent mutagenesis.
Probab=51.21 E-value=49 Score=23.60 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=19.1
Q ss_pred EeccccCCceeEEeeeEEecC-CCceEE
Q 019204 169 IGRLLPTGTSLTVVGEAVKDD-IGTVRI 195 (344)
Q Consensus 169 ~E~~L~~G~~l~vvGe~~~d~-~g~~~i 195 (344)
....|.+|..|.+.|.+..+. +|.+.+
T Consensus 42 ~~~~l~~g~~v~v~g~v~~~~~~~~~~l 69 (78)
T cd04489 42 LGFPLEEGMEVLVRGKVSFYEPRGGYQL 69 (78)
T ss_pred CCCCCCCCCEEEEEEEEEEECCCCEEEE
Confidence 336799999999999987653 344443
No 104
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=50.97 E-value=9 Score=32.27 Aligned_cols=43 Identities=21% Similarity=0.409 Sum_probs=28.9
Q ss_pred cccccccccccccceEEecCCCcc----cccchhhCC------CCCcccccccc
Q 019204 293 MPDLCVICLEQEYNAVFFPCGHLC----CCLICSSRL------TNCPLCRRRID 336 (344)
Q Consensus 293 ~~~~C~iC~~~~~~~~~~pCgH~~----~C~~C~~~~------~~CP~CR~~i~ 336 (344)
.+..|-||++.... ...||.-.. .-.+|.... ..|++|+.+..
T Consensus 7 ~~~~CRIC~~~~~~-~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 7 MDKCCWICKDEYDV-VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCeeEecCCCCCC-ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 34689999998754 345776432 245676553 58999998763
No 105
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=50.89 E-value=12 Score=35.04 Aligned_cols=36 Identities=25% Similarity=0.430 Sum_probs=22.4
Q ss_pred cceEEecCCCccccc--chhhC----CCCCccccccccceEec
Q 019204 305 YNAVFFPCGHLCCCL--ICSSR----LTNCPLCRRRIDQVVRT 341 (344)
Q Consensus 305 ~~~~~~pCgH~~~C~--~C~~~----~~~CP~CR~~i~~~~~i 341 (344)
.-.+++.|||+---. .|... -.+||+||..=. ++++
T Consensus 315 QP~vYl~CGHV~G~H~WG~~e~~g~~~r~CPmC~~~gp-~V~L 356 (429)
T KOG3842|consen 315 QPWVYLNCGHVHGYHNWGVRENTGQRERECPMCRVVGP-YVPL 356 (429)
T ss_pred CCeEEEeccccccccccccccccCcccCcCCeeeeecc-eeee
Confidence 347889999986432 23222 258999997433 4444
No 106
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=50.80 E-value=4.1 Score=29.38 Aligned_cols=39 Identities=23% Similarity=0.594 Sum_probs=20.1
Q ss_pred cccccccccccceEEecCCCcccccchhhCC---CCCccccccccce
Q 019204 295 DLCVICLEQEYNAVFFPCGHLCCCLICSSRL---TNCPLCRRRIDQV 338 (344)
Q Consensus 295 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~---~~CP~CR~~i~~~ 338 (344)
..|+.|...-...- ||.. |..|.... ..||-|.++++..
T Consensus 2 ~~CP~C~~~L~~~~----~~~~-C~~C~~~~~~~a~CPdC~~~Le~L 43 (70)
T PF07191_consen 2 NTCPKCQQELEWQG----GHYH-CEACQKDYKKEAFCPDCGQPLEVL 43 (70)
T ss_dssp -B-SSS-SBEEEET----TEEE-ETTT--EEEEEEE-TTT-SB-EEE
T ss_pred CcCCCCCCccEEeC----CEEE-CccccccceecccCCCcccHHHHH
Confidence 36888876522111 5555 88888775 5799999887654
No 107
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=50.56 E-value=63 Score=33.97 Aligned_cols=46 Identities=20% Similarity=0.324 Sum_probs=25.1
Q ss_pred cccccccccccccceEEe----cCCCcccccchhhC--------CCCCccccccccce
Q 019204 293 MPDLCVICLEQEYNAVFF----PCGHLCCCLICSSR--------LTNCPLCRRRIDQV 338 (344)
Q Consensus 293 ~~~~C~iC~~~~~~~~~~----pCgH~~~C~~C~~~--------~~~CP~CR~~i~~~ 338 (344)
....|.-|......++-. .=.-.+.|..|-.. ...||+|...+...
T Consensus 1130 ~~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs~y~~CPLCHs~~~~~ 1187 (1189)
T KOG2041|consen 1130 YDLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEISKYNCCPLCHSMESFR 1187 (1189)
T ss_pred cCCCChhhcCcCceeeccCCccccceEEEccccccccccccccccccCccccChhhcc
Confidence 345788887755444321 00112345555332 26899999877543
No 108
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=48.40 E-value=12 Score=34.88 Aligned_cols=47 Identities=21% Similarity=0.521 Sum_probs=23.4
Q ss_pred ccccccccccccceEEecC---C--CcccccchhhCC----CCCccccccccceEec
Q 019204 294 PDLCVICLEQEYNAVFFPC---G--HLCCCLICSSRL----TNCPLCRRRIDQVVRT 341 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pC---g--H~~~C~~C~~~~----~~CP~CR~~i~~~~~i 341 (344)
...|+||-..+.-.++..= | |+. |.-|.... ..||.|-..-......
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~-Cs~C~t~W~~~R~~Cp~Cg~~~~~~l~~ 227 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLH-CSLCGTEWRFVRIKCPYCGNTDHEKLEY 227 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEE-ETTT--EEE--TTS-TTT---SS-EEE-
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEE-cCCCCCeeeecCCCCcCCCCCCCcceee
Confidence 4699999999988888764 3 455 88998775 4899998765554443
No 109
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=47.14 E-value=9.3 Score=23.37 Aligned_cols=15 Identities=20% Similarity=0.718 Sum_probs=11.4
Q ss_pred CCCccccccccceEe
Q 019204 326 TNCPLCRRRIDQVVR 340 (344)
Q Consensus 326 ~~CP~CR~~i~~~~~ 340 (344)
..||+|..+-..+.+
T Consensus 19 ~~CP~Cg~~~~~F~~ 33 (34)
T cd00729 19 EKCPICGAPKEKFEE 33 (34)
T ss_pred CcCcCCCCchHHcEE
Confidence 589999987666554
No 110
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.10 E-value=5.9 Score=36.55 Aligned_cols=23 Identities=35% Similarity=1.071 Sum_probs=16.3
Q ss_pred CCCcccccchhhCC-----------------CCCccccccc
Q 019204 312 CGHLCCCLICSSRL-----------------TNCPLCRRRI 335 (344)
Q Consensus 312 CgH~~~C~~C~~~~-----------------~~CP~CR~~i 335 (344)
|.-+. |.+|..++ ..||.||+..
T Consensus 325 crp~w-c~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~f 364 (381)
T KOG3899|consen 325 CRPLW-CRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNF 364 (381)
T ss_pred cccHH-HHHHHHHHHhhcccchhHHHHHhcCCCCcchhhce
Confidence 44555 78887552 4899999865
No 111
>PF10217 DUF2039: Uncharacterized conserved protein (DUF2039); InterPro: IPR019351 This entry is a region of approximately 100 residues containing three pairs of cysteine residues. The region is conserved from plants to humans but its function is unknown.
Probab=45.04 E-value=3.5 Score=31.48 Aligned_cols=36 Identities=25% Similarity=0.731 Sum_probs=28.3
Q ss_pred ccccccccccccceEEecCCCcccccchhhCCCCCcccccc
Q 019204 294 PDLCVICLEQEYNAVFFPCGHLCCCLICSSRLTNCPLCRRR 334 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~CR~~ 334 (344)
+..|..|......-.+ |.. |..|+..+..|+-|..+
T Consensus 55 p~kC~~C~qktVk~AY----h~i-C~~Ca~~~~vCaKC~k~ 90 (92)
T PF10217_consen 55 PKKCNKCQQKTVKHAY----HVI-CDPCAKELKVCAKCGKP 90 (92)
T ss_pred CccccccccchHHHHH----HHH-HHHHHHhhccCcccCCC
Confidence 4578888876654444 776 99999999999999875
No 112
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.83 E-value=12 Score=33.97 Aligned_cols=44 Identities=11% Similarity=0.222 Sum_probs=30.2
Q ss_pred cccccccccc----cccceEEecCCCcccccchhhCC--CCCccccccccc
Q 019204 293 MPDLCVICLE----QEYNAVFFPCGHLCCCLICSSRL--TNCPLCRRRIDQ 337 (344)
Q Consensus 293 ~~~~C~iC~~----~~~~~~~~pCgH~~~C~~C~~~~--~~CP~CR~~i~~ 337 (344)
....|+|=-- ..+-+.+.+|||++ =+.-...+ ..|++|.+....
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~-SerAlKeikas~C~~C~a~y~~ 159 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVF-SERALKEIKASVCHVCGAAYQE 159 (293)
T ss_pred ceeecccccceecceEEEEEEeccceec-cHHHHHHhhhccccccCCcccc
Confidence 3458887633 45667888999999 33333333 589999987753
No 113
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=44.68 E-value=9.6 Score=24.32 Aligned_cols=13 Identities=31% Similarity=0.416 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHhc
Q 019204 10 CLSGAALYLLGRS 22 (344)
Q Consensus 10 ~~~~~~~~~~~~~ 22 (344)
++.++++|+.||+
T Consensus 26 ~vl~~~l~~~~rR 38 (40)
T PF08693_consen 26 IVLGAFLFFWYRR 38 (40)
T ss_pred HHHHHHhheEEec
Confidence 3333444433444
No 114
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=44.23 E-value=16 Score=29.57 Aligned_cols=10 Identities=10% Similarity=-0.007 Sum_probs=4.1
Q ss_pred HHhcchhhhH
Q 019204 19 LGRSSGRDAE 28 (344)
Q Consensus 19 ~~~~~~~~~~ 28 (344)
++.+.+|+.+
T Consensus 19 ~~~~~rRR~r 28 (130)
T PF12273_consen 19 FYCHNRRRRR 28 (130)
T ss_pred HHHHHHHHhh
Confidence 4444444343
No 115
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.71 E-value=23 Score=25.51 Aligned_cols=34 Identities=18% Similarity=0.175 Sum_probs=20.7
Q ss_pred chhhHHHHHHHHH-HHHHhcchhhhHhhcccccccchh
Q 019204 4 WGGISCCLSGAAL-YLLGRSSGRDAELLKTVTRVNQLE 40 (344)
Q Consensus 4 ~g~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~ 40 (344)
++++ ++++|++. ||+.|+.- -+.|++-|+.....
T Consensus 9 ~ivl-~ll~G~~~G~fiark~~--~k~lk~NPpine~~ 43 (71)
T COG3763 9 LIVL-ALLAGLIGGFFIARKQM--KKQLKDNPPINEEM 43 (71)
T ss_pred HHHH-HHHHHHHHHHHHHHHHH--HHHHhhCCCCCHHH
Confidence 3344 55555554 66666543 46788888877544
No 116
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=43.54 E-value=8.6 Score=29.85 Aligned_cols=24 Identities=33% Similarity=0.624 Sum_probs=19.7
Q ss_pred ecCCCcccccchhhCC----CCCcccccc
Q 019204 310 FPCGHLCCCLICSSRL----TNCPLCRRR 334 (344)
Q Consensus 310 ~pCgH~~~C~~C~~~~----~~CP~CR~~ 334 (344)
--|.|.| -.-|+.+. ..||+|.+.
T Consensus 79 G~CNHaF-H~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 79 GVCNHAF-HFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred eecchHH-HHHHHHHHHhhcCcCCCcCcc
Confidence 3799999 78898764 689999875
No 117
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=43.13 E-value=7.4 Score=40.72 Aligned_cols=43 Identities=12% Similarity=0.107 Sum_probs=29.5
Q ss_pred ccccccccc----cceEEecCCCcccccchhhCC----------CCCccccccccceE
Q 019204 296 LCVICLEQE----YNAVFFPCGHLCCCLICSSRL----------TNCPLCRRRIDQVV 339 (344)
Q Consensus 296 ~C~iC~~~~----~~~~~~pCgH~~~C~~C~~~~----------~~CP~CR~~i~~~~ 339 (344)
.|.+|+..+ ..+.+-.|+|.+ |..|+... ..|++|..-|....
T Consensus 101 ~C~~E~S~~~ds~~i~P~~~~~~~~-CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWs 157 (1134)
T KOG0825|consen 101 VCEKEHSPDVDSSNICPVQTHVENQ-CPNCLKSCNDQLEESEKHTAHYFCEECVGSWS 157 (1134)
T ss_pred hhheecCCcccccCcCchhhhhhhh-hhHHHHHHHHHhhccccccccccHHHHhhhhh
Confidence 566666662 233444599999 99998763 47999987665543
No 118
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=43.00 E-value=1.1e+02 Score=21.22 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019204 244 IRCILQRKRRWELRRRVLAAAA 265 (344)
Q Consensus 244 ~r~~~~~r~~~~~~~~~~~~~~ 265 (344)
.+.++.+++.++.++++++.++
T Consensus 41 ~~~~~~r~~~~~~~k~l~~le~ 62 (68)
T PF06305_consen 41 PSRLRLRRRIRRLRKELKKLEK 62 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555554443
No 119
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.96 E-value=29 Score=37.01 Aligned_cols=30 Identities=33% Similarity=0.538 Sum_probs=20.8
Q ss_pred ccccccccccc--cceEEecCCCcccccchhhC
Q 019204 294 PDLCVICLEQE--YNAVFFPCGHLCCCLICSSR 324 (344)
Q Consensus 294 ~~~C~iC~~~~--~~~~~~pCgH~~~C~~C~~~ 324 (344)
...|-+|.-.- +--.+.||||.| -++|...
T Consensus 817 ~d~C~~C~~~ll~~pF~vf~CgH~F-H~~Cl~~ 848 (911)
T KOG2034|consen 817 QDSCDHCGRPLLIKPFYVFPCGHCF-HRDCLIR 848 (911)
T ss_pred ccchHHhcchhhcCcceeeeccchH-HHHHHHH
Confidence 45899996632 223344999999 8999754
No 120
>PHA03049 IMV membrane protein; Provisional
Probab=41.73 E-value=22 Score=25.25 Aligned_cols=22 Identities=14% Similarity=0.045 Sum_probs=15.9
Q ss_pred cchhhHHHHHHHHHHHHHhcch
Q 019204 3 SWGGISCCLSGAALYLLGRSSG 24 (344)
Q Consensus 3 ~~g~~~~~~~~~~~~~~~~~~~ 24 (344)
++.+++.++.|+++|-+|.+++
T Consensus 6 ~l~iICVaIi~lIvYgiYnkk~ 27 (68)
T PHA03049 6 ILVIICVVIIGLIVYGIYNKKT 27 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 4456667788888887887765
No 121
>cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1). Both these proteins are 3'-to-5'exoribonucleases. YhaM requires Mn2+ or Co2+ for activity and is inactive in the presence of Mg2+. YhaM also has a Mn2+ dependent 3'-to-5'single-stranded DNA exonuclease activity. SaCBF is also a double-stranded DNA binding protein, binding specifically to cmp, the replication enhancer found in S. aureus plasmid pT181. Proteins in this group combine an N-terminal OB fold with a C-terminal HD domain. The HD domain is found in metal-dependent phosphohydrolases.
Probab=41.66 E-value=68 Score=22.83 Aligned_cols=26 Identities=15% Similarity=0.286 Sum_probs=19.1
Q ss_pred eccccCCceeEEeeeEEecCCCceEEe
Q 019204 170 GRLLPTGTSLTVVGEAVKDDIGTVRIQ 196 (344)
Q Consensus 170 E~~L~~G~~l~vvGe~~~d~~g~~~i~ 196 (344)
+..|.+|+.+.+.|.+... +|.+.+.
T Consensus 44 ~~~l~~g~~v~v~G~v~~~-~~~~~l~ 69 (83)
T cd04492 44 EEKFKPGDIVHVKGRVEEY-RGRLQLK 69 (83)
T ss_pred HhhCCCCCEEEEEEEEEEe-CCceeEE
Confidence 5678999999999997654 4555544
No 122
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=41.19 E-value=30 Score=24.50 Aligned_cols=34 Identities=12% Similarity=0.080 Sum_probs=19.0
Q ss_pred hhhHHHHHHHHHHHHHhcchhhhHhhcccccccchh
Q 019204 5 GGISCCLSGAALYLLGRSSGRDAELLKTVTRVNQLE 40 (344)
Q Consensus 5 g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 40 (344)
+++++++++++.||+.|++- -+.|++-|+.+...
T Consensus 3 iilali~G~~~Gff~ar~~~--~k~l~~NPpine~m 36 (64)
T PF03672_consen 3 IILALIVGAVIGFFIARKYM--EKQLKENPPINEKM 36 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHCCCCCHHH
Confidence 44434554555576776644 35567777665443
No 123
>PF00672 HAMP: HAMP domain; InterPro: IPR003660 The HAMP linker domain (present in Histidine kinases, Adenyl cyclases, Methyl-accepting proteins and Phosphatases) is an approximately 50-amino acid alpha-helical region. It is found in bacterial sensor and chemotaxis proteins and in eukaryotic histidine kinases. The bacterial proteins are usually integral membrane proteins and part of a two-component signal transduction pathway. One or several copies of the HAMP domain can be found in association with other domains, such as the histidine kinase domain, the bacterial chemotaxis sensory transducer domain, the PAS repeat, the EAL domain, the GGDEF domain, the protein phosphatase 2C-like domain, the guanylate cyclase domain, or the response regulatory domain. It has been suggested that the HAMP domain possesses a role of regulating the phosphorylation or methylation of homodimeric receptors by transmitting the conformational changes in periplasmic ligand-binding domains to cytoplasmic signalling kinase and methyl-acceptor domains.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016021 integral to membrane; PDB: 3PJX_A 3PJW_A 3ZX6_B 2Y20_B 2Y0Q_D 2Y21_H 3ZRW_C 2L7H_B 2LFS_B 2L7I_B ....
Probab=40.68 E-value=18 Score=25.25 Aligned_cols=33 Identities=24% Similarity=0.114 Sum_probs=19.0
Q ss_pred CccchhhHHHHHHHHHHHHHhcchhhhHhhccc
Q 019204 1 MISWGGISCCLSGAALYLLGRSSGRDAELLKTV 33 (344)
Q Consensus 1 m~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 33 (344)
|++++++.++++.++.|++.++..+-++.|.+.
T Consensus 1 L~~~~~~~~~~~~~~~~~~~~~i~~pl~~l~~~ 33 (70)
T PF00672_consen 1 LLVLFLIILLLSLLLAWLLARRITRPLRRLSDA 33 (70)
T ss_dssp -HHHHHHHHHHHHHHHHH--HTTCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555546666666677777777677766443
No 124
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=40.55 E-value=8.4 Score=37.53 Aligned_cols=30 Identities=27% Similarity=0.692 Sum_probs=21.0
Q ss_pred ccccccccccccc----eEEecCCCcccccchhhC
Q 019204 294 PDLCVICLEQEYN----AVFFPCGHLCCCLICSSR 324 (344)
Q Consensus 294 ~~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~ 324 (344)
...|.||+..... .....|+|.| |.+|..+
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~f-C~~C~k~ 179 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRF-CKDCVKQ 179 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchh-hhHHhHH
Confidence 4589999932221 2245799999 9999875
No 125
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=39.98 E-value=16 Score=29.53 Aligned_cols=9 Identities=22% Similarity=0.272 Sum_probs=3.4
Q ss_pred HHHHHhcch
Q 019204 16 LYLLGRSSG 24 (344)
Q Consensus 16 ~~~~~~~~~ 24 (344)
+|++.|.+|
T Consensus 85 ~y~irR~~K 93 (122)
T PF01102_consen 85 SYCIRRLRK 93 (122)
T ss_dssp HHHHHHHS-
T ss_pred HHHHHHHhc
Confidence 454444433
No 126
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=38.84 E-value=16 Score=20.93 Aligned_cols=17 Identities=29% Similarity=0.868 Sum_probs=9.8
Q ss_pred ccchhhCC----CCCcccccc
Q 019204 318 CLICSSRL----TNCPLCRRR 334 (344)
Q Consensus 318 C~~C~~~~----~~CP~CR~~ 334 (344)
|.+|...+ ..||.|.-.
T Consensus 3 CP~C~~~V~~~~~~Cp~CG~~ 23 (26)
T PF10571_consen 3 CPECGAEVPESAKFCPHCGYD 23 (26)
T ss_pred CCCCcCCchhhcCcCCCCCCC
Confidence 55665554 467777543
No 127
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.61 E-value=12 Score=36.01 Aligned_cols=40 Identities=28% Similarity=0.573 Sum_probs=28.8
Q ss_pred cccccccccccc---eEEecCCCcccccchhhCC-------CCCccccccc
Q 019204 295 DLCVICLEQEYN---AVFFPCGHLCCCLICSSRL-------TNCPLCRRRI 335 (344)
Q Consensus 295 ~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~-------~~CP~CR~~i 335 (344)
..|+|=.++..+ ++-+.|||+. |.+=+.++ =+||-|-...
T Consensus 335 F~CPVlKeqtsdeNPPm~L~CGHVI-SkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLICGHVI-SKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred eecccchhhccCCCCCeeeecccee-cHHHHHHHhhCCCeeeeCCCCCccc
Confidence 478886653322 5667999999 88887776 2799998654
No 128
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.24 E-value=15 Score=32.65 Aligned_cols=41 Identities=24% Similarity=0.513 Sum_probs=31.8
Q ss_pred cccccccc--cccceEEecCCCcccccchhhCC------------CCCcccccccc
Q 019204 295 DLCVICLE--QEYNAVFFPCGHLCCCLICSSRL------------TNCPLCRRRID 336 (344)
Q Consensus 295 ~~C~iC~~--~~~~~~~~pCgH~~~C~~C~~~~------------~~CP~CR~~i~ 336 (344)
..|..|-. ...+++=+-|-|+| -+.|...- -.||-|.+.|-
T Consensus 51 pNC~LC~t~La~gdt~RLvCyhlf-HW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 51 PNCRLCNTPLASGDTTRLVCYHLF-HWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCCceeCCccccCcceeehhhhhH-HHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 46888866 44567778999999 89998652 27999998874
No 129
>PF12120 Arr-ms: Rifampin ADP-ribosyl transferase; InterPro: IPR021975 This domain is part of the beta subunit of bacterial DNA dependent RNA polymerase. This domain is the binding site for the antibacterial drug rifampin (and its analogues) which blocks the DNA/RNA tunnel and prevents initiation of transcription. ; PDB: 2HW2_A.
Probab=37.87 E-value=29 Score=26.54 Aligned_cols=46 Identities=26% Similarity=0.390 Sum_probs=23.6
Q ss_pred CCceEEEEecCCCCccceeeeeeeeeecCcccccccccccccceeeeeEEEEeccccCCceeEEeeeE
Q 019204 118 DGTGCVFVVGARGATGFALTVGSEVFEESGRSLVHGTLDYLQGLKMLGVKRIGRLLPTGTSLTVVGEA 185 (344)
Q Consensus 118 D~tg~v~V~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~r~~E~~L~~G~~l~vvGe~ 185 (344)
|+.|+|.|+.|.+..-.|-++...+|+ |.-+..||..| +|-|+||+
T Consensus 52 ~g~~RiYiVEPtG~~EdDPNvTdkkfP---------------GNPTrSyRs~~-------PlrvvgEv 97 (100)
T PF12120_consen 52 EGRGRIYIVEPTGPFEDDPNVTDKKFP---------------GNPTRSYRSRE-------PLRVVGEV 97 (100)
T ss_dssp SS--EEEEEEESS--EE-GGGSSSSSS---------------S-TT-EEEESS--------EEEEEEE
T ss_pred CCCCcEEEEccCCCcccCccccCCCCC---------------CCCcceeecCC-------CeEEEEEe
Confidence 567889999888885333333333333 33345677664 67788885
No 130
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=37.52 E-value=36 Score=25.35 Aligned_cols=20 Identities=20% Similarity=0.122 Sum_probs=3.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019204 243 VIRCILQRKRRWELRRRVLA 262 (344)
Q Consensus 243 ~~r~~~~~r~~~~~~~~~~~ 262 (344)
.++.|++.++|++..+.+++
T Consensus 26 v~ieYrk~~rqrkId~li~R 45 (81)
T PF00558_consen 26 VYIEYRKIKRQRKIDRLIER 45 (81)
T ss_dssp H------------CHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHH
Confidence 34555555555555554443
No 131
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=36.32 E-value=21 Score=33.68 Aligned_cols=43 Identities=37% Similarity=0.989 Sum_probs=32.0
Q ss_pred ccccccccccc--cceEEe--cCCCcccccchhhCC----CCCccccccccc
Q 019204 294 PDLCVICLEQE--YNAVFF--PCGHLCCCLICSSRL----TNCPLCRRRIDQ 337 (344)
Q Consensus 294 ~~~C~iC~~~~--~~~~~~--pCgH~~~C~~C~~~~----~~CP~CR~~i~~ 337 (344)
+..|++|.+.. .+..++ ||+|.. |..|.... ..||.||.+...
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~~-~l~~~~t~~~~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFRL-CLFCHKTISDGDGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCCcccccccccccccccccc-hhhhhhcccccCCCCCccCCcccc
Confidence 46899999844 333444 688885 99998876 589999977654
No 132
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=35.90 E-value=17 Score=38.41 Aligned_cols=15 Identities=40% Similarity=0.871 Sum_probs=10.6
Q ss_pred cCCCcccccchhhCC
Q 019204 311 PCGHLCCCLICSSRL 325 (344)
Q Consensus 311 pCgH~~~C~~C~~~~ 325 (344)
.|||+..|..|...|
T Consensus 440 ~Cg~v~~Cp~Cd~~l 454 (730)
T COG1198 440 DCGYIAECPNCDSPL 454 (730)
T ss_pred cCCCcccCCCCCcce
Confidence 577777777776654
No 133
>cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1). Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The OB fold domain of RPA2 has dual roles in ssDNA binding and trimerization.
Probab=35.89 E-value=1.9e+02 Score=21.81 Aligned_cols=18 Identities=28% Similarity=0.403 Sum_probs=14.6
Q ss_pred eccccCCceeEEeeeEEe
Q 019204 170 GRLLPTGTSLTVVGEAVK 187 (344)
Q Consensus 170 E~~L~~G~~l~vvGe~~~ 187 (344)
..-|.+|.-+-|.|.+..
T Consensus 60 ~~~i~~G~vvrV~G~i~~ 77 (92)
T cd04483 60 AKVLEIGDLLRVRGSIRT 77 (92)
T ss_pred ccccCCCCEEEEEEEEec
Confidence 345999999999999754
No 134
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=35.57 E-value=19 Score=27.39 Aligned_cols=38 Identities=24% Similarity=0.599 Sum_probs=29.3
Q ss_pred ccccccccccccceEEecCCCcccccchhhCCCCCccccccccc
Q 019204 294 PDLCVICLEQEYNAVFFPCGHLCCCLICSSRLTNCPLCRRRIDQ 337 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~CR~~i~~ 337 (344)
...|.+|-..... =||-+ |-.|+..-..|.+|-..|..
T Consensus 44 ~~~C~~CK~~v~q-----~g~~Y-Cq~CAYkkGiCamCGKki~d 81 (90)
T PF10235_consen 44 SSKCKICKTKVHQ-----PGAKY-CQTCAYKKGICAMCGKKILD 81 (90)
T ss_pred Ccccccccccccc-----CCCcc-ChhhhcccCcccccCCeecc
Confidence 3489999765332 26666 99999999999999998844
No 135
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=35.39 E-value=14 Score=25.04 Aligned_cols=9 Identities=56% Similarity=1.420 Sum_probs=3.0
Q ss_pred CCccccccc
Q 019204 327 NCPLCRRRI 335 (344)
Q Consensus 327 ~CP~CR~~i 335 (344)
.||+|.+++
T Consensus 22 ~CPlC~r~l 30 (54)
T PF04423_consen 22 CCPLCGRPL 30 (54)
T ss_dssp E-TTT--EE
T ss_pred cCCCCCCCC
Confidence 455555544
No 136
>PRK11677 hypothetical protein; Provisional
Probab=34.22 E-value=35 Score=28.06 Aligned_cols=28 Identities=11% Similarity=-0.073 Sum_probs=0.0
Q ss_pred ccchhhHHHHHHHHHHHHHhcchhhhHh
Q 019204 2 ISWGGISCCLSGAALYLLGRSSGRDAEL 29 (344)
Q Consensus 2 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 29 (344)
|+++++++++++++.|++.|...+..+.
T Consensus 3 W~~a~i~livG~iiG~~~~R~~~~~~~~ 30 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRFGNRKLRQ 30 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccchhhH
No 137
>PHA02610 uvsY.-2 hypothetical protein; Provisional
Probab=34.03 E-value=19 Score=24.26 Aligned_cols=15 Identities=20% Similarity=0.705 Sum_probs=11.3
Q ss_pred CCCccccccccceEe
Q 019204 326 TNCPLCRRRIDQVVR 340 (344)
Q Consensus 326 ~~CP~CR~~i~~~~~ 340 (344)
..|++|+++|.....
T Consensus 2 ~iCvvCK~Pi~~al~ 16 (53)
T PHA02610 2 KICVVCKQPIEKALV 16 (53)
T ss_pred ceeeeeCCchhhceE
Confidence 469999999976543
No 138
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=33.93 E-value=12 Score=27.52 Aligned_cols=43 Identities=28% Similarity=0.655 Sum_probs=15.7
Q ss_pred ccccccccccccc----eEEe---cCCCcccccchhhC-----CCCCccccccccc
Q 019204 294 PDLCVICLEQEYN----AVFF---PCGHLCCCLICSSR-----LTNCPLCRRRIDQ 337 (344)
Q Consensus 294 ~~~C~iC~~~~~~----~~~~---pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 337 (344)
...|.||-+..-. -+|. .|+--+ |..|+.- .+.||.|+.+..+
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPv-Cr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPV-CRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS------HHHHHHHHHTS-SB-TTT--B---
T ss_pred CcccccccCccccCCCCCEEEEEcccCCcc-chhHHHHHhhcCcccccccCCCccc
Confidence 4589999874322 2343 444444 8888742 3789999976543
No 139
>PF10886 DUF2685: Protein of unknown function (DUF2685); InterPro: IPR024362 This is a family of uncharacterised bacteriophage proteins. Their function in unknown.
Probab=33.57 E-value=19 Score=24.51 Aligned_cols=14 Identities=29% Similarity=0.831 Sum_probs=11.2
Q ss_pred CCCccccccccceE
Q 019204 326 TNCPLCRRRIDQVV 339 (344)
Q Consensus 326 ~~CP~CR~~i~~~~ 339 (344)
.+|.+|+++|....
T Consensus 2 ~~CvVCKqpi~~a~ 15 (54)
T PF10886_consen 2 EICVVCKQPIDDAL 15 (54)
T ss_pred CeeeeeCCccCcce
Confidence 57999999998753
No 140
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=32.37 E-value=15 Score=33.18 Aligned_cols=20 Identities=30% Similarity=0.966 Sum_probs=16.0
Q ss_pred cccchhhCC----CCCcccccccc
Q 019204 317 CCLICSSRL----TNCPLCRRRID 336 (344)
Q Consensus 317 ~C~~C~~~~----~~CP~CR~~i~ 336 (344)
.|.+|-..+ +.||+|+.+-.
T Consensus 196 ~C~sC~qqIHRNAPiCPlCK~KsR 219 (230)
T PF10146_consen 196 TCQSCHQQIHRNAPICPLCKAKSR 219 (230)
T ss_pred hhHhHHHHHhcCCCCCcccccccc
Confidence 599998775 79999997643
No 141
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=32.28 E-value=20 Score=20.41 Aligned_cols=10 Identities=40% Similarity=1.268 Sum_probs=8.1
Q ss_pred CCCccccccc
Q 019204 326 TNCPLCRRRI 335 (344)
Q Consensus 326 ~~CP~CR~~i 335 (344)
..||+|.+.+
T Consensus 2 v~CPiC~~~v 11 (26)
T smart00734 2 VQCPVCFREV 11 (26)
T ss_pred CcCCCCcCcc
Confidence 3699998877
No 142
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.47 E-value=19 Score=26.51 Aligned_cols=8 Identities=50% Similarity=1.277 Sum_probs=6.2
Q ss_pred CCCccccc
Q 019204 326 TNCPLCRR 333 (344)
Q Consensus 326 ~~CP~CR~ 333 (344)
.-||.||.
T Consensus 22 D~CPrCrG 29 (88)
T COG3809 22 DYCPRCRG 29 (88)
T ss_pred eeCCcccc
Confidence 47999984
No 143
>PF10855 DUF2648: Protein of unknown function (DUF2648); InterPro: IPR022561 This family of proteins with unknown function appears to be restricted to eubacteia.
Probab=30.44 E-value=42 Score=20.19 Aligned_cols=22 Identities=27% Similarity=0.229 Sum_probs=13.0
Q ss_pred hhhHHHHHHHHHHHHHhcchhhhH
Q 019204 5 GGISCCLSGAALYLLGRSSGRDAE 28 (344)
Q Consensus 5 g~~~~~~~~~~~~~~~~~~~~~~~ 28 (344)
.++ ++++|+.++ .++++...+.
T Consensus 5 ~i~-L~l~ga~f~-~fKKyQ~~vn 26 (33)
T PF10855_consen 5 AII-LILGGAAFY-GFKKYQNHVN 26 (33)
T ss_pred eeh-hhhhhHHHH-HHHHHHHHHh
Confidence 344 566666665 6777665443
No 144
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=30.26 E-value=21 Score=37.70 Aligned_cols=43 Identities=21% Similarity=0.502 Sum_probs=31.6
Q ss_pred ccccccccc--cccceEEecCCCcc----cccchhhCC------CCCcccccccc
Q 019204 294 PDLCVICLE--QEYNAVFFPCGHLC----CCLICSSRL------TNCPLCRRRID 336 (344)
Q Consensus 294 ~~~C~iC~~--~~~~~~~~pCgH~~----~C~~C~~~~------~~CP~CR~~i~ 336 (344)
+..|.||.. .+.+..|.||.... ...+|.... ++|-+|..+++
T Consensus 12 ~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~ 66 (1175)
T COG5183 12 KRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK 66 (1175)
T ss_pred chhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence 468999976 55678999998543 356777653 58999998764
No 145
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=30.20 E-value=27 Score=28.18 Aligned_cols=28 Identities=14% Similarity=0.021 Sum_probs=14.9
Q ss_pred hhhhhHHHHHHHhhhHHHHHHHHHHHHH
Q 019204 217 LGKWARWYKYASFGLTIFGAFLIAKRVI 244 (344)
Q Consensus 217 l~~~ar~~~~~~i~l~~~G~~ll~~~~~ 244 (344)
+...+-.+-.+++++|++|++++..+++
T Consensus 61 fs~~~i~~Ii~gv~aGvIg~Illi~y~i 88 (122)
T PF01102_consen 61 FSEPAIIGIIFGVMAGVIGIILLISYCI 88 (122)
T ss_dssp SS-TCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccceeehhHHHHHHHHHHHHHHHHHH
Confidence 3333444445666666667666555444
No 146
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.76 E-value=20 Score=32.34 Aligned_cols=29 Identities=24% Similarity=0.258 Sum_probs=26.6
Q ss_pred cccccccccccceEEecCCCcccccchhhC
Q 019204 295 DLCVICLEQEYNAVFFPCGHLCCCLICSSR 324 (344)
Q Consensus 295 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~ 324 (344)
+-|..|+...++.++.|=||+| |.+|+..
T Consensus 44 dcCsLtLqPc~dPvit~~Gylf-drEaILe 72 (303)
T KOG3039|consen 44 DCCSLTLQPCRDPVITPDGYLF-DREAILE 72 (303)
T ss_pred ceeeeecccccCCccCCCCeee-eHHHHHH
Confidence 4899999999999999999999 9999864
No 147
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=29.74 E-value=36 Score=32.14 Aligned_cols=41 Identities=22% Similarity=0.530 Sum_probs=28.1
Q ss_pred cccccccccccccceEEec---CCCcc-cccchhhCC----CCCccccc
Q 019204 293 MPDLCVICLEQEYNAVFFP---CGHLC-CCLICSSRL----TNCPLCRR 333 (344)
Q Consensus 293 ~~~~C~iC~~~~~~~~~~p---CgH~~-~C~~C~~~~----~~CP~CR~ 333 (344)
....|++|-..|.-.++.. =|+.+ .|.-|.... .+||.|..
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 4579999999886554422 23222 288887775 48999986
No 148
>cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit. PolII is a family D DNA polymerase, having a 3-prime to 5-prime exonuclease activity. P. abyssi PolII is heterodimeric. The large subunit appears to be the polymerase, and the small subunit may be the exonuclease. The small subunit contains a calcineurin-like phosphatase superfamily domain C-terminal to this OB-fold domain.
Probab=29.73 E-value=1.2e+02 Score=22.18 Aligned_cols=19 Identities=16% Similarity=0.120 Sum_probs=15.0
Q ss_pred EeccccCCceeEEeeeEEe
Q 019204 169 IGRLLPTGTSLTVVGEAVK 187 (344)
Q Consensus 169 ~E~~L~~G~~l~vvGe~~~ 187 (344)
.+.+|.+|+.+.+.|.+..
T Consensus 44 ~~~~l~~d~~v~v~g~v~~ 62 (79)
T cd04490 44 EAEDILPDEVIGVSGTVSK 62 (79)
T ss_pred hhhhccCCCEEEEEEEEec
Confidence 3567889999999999743
No 149
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=29.51 E-value=30 Score=23.36 Aligned_cols=21 Identities=38% Similarity=0.963 Sum_probs=13.1
Q ss_pred cCCCcccccchhhC----CCCCcccc
Q 019204 311 PCGHLCCCLICSSR----LTNCPLCR 332 (344)
Q Consensus 311 pCgH~~~C~~C~~~----~~~CP~CR 332 (344)
.|++.| |.+|..- +..||-|-
T Consensus 26 ~C~~~F-C~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 26 KCKNHF-CIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp TTT--B--HHHHHTTTTTS-SSSTT-
T ss_pred CCCCcc-ccCcChhhhccccCCcCCC
Confidence 588888 9999764 47999984
No 150
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=29.28 E-value=12 Score=41.31 Aligned_cols=43 Identities=28% Similarity=0.665 Sum_probs=32.6
Q ss_pred cccccccccccc-ceEEecCCCcccccchhhCC----CCCccccccccc
Q 019204 294 PDLCVICLEQEY-NAVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQ 337 (344)
Q Consensus 294 ~~~C~iC~~~~~-~~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~ 337 (344)
...|.+|.+--+ .....-|||-. |..|...+ ..||+|...+.+
T Consensus 1153 ~~~c~ic~dil~~~~~I~~cgh~~-c~~c~~~~l~~~s~~~~~ksi~~d 1200 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQGGIAGCGHEP-CCRCDELWLYASSRCPICKSIKGD 1200 (1394)
T ss_pred ccchHHHHHHHHhcCCeeeechhH-hhhHHHHHHHHhccCcchhhhhhh
Confidence 358999999666 34455799999 77898775 589999955443
No 151
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=28.97 E-value=15 Score=21.87 Aligned_cols=20 Identities=30% Similarity=0.785 Sum_probs=10.9
Q ss_pred CcccccchhhCC--------CCCcccccc
Q 019204 314 HLCCCLICSSRL--------TNCPLCRRR 334 (344)
Q Consensus 314 H~~~C~~C~~~~--------~~CP~CR~~ 334 (344)
|.| |..|...+ ..||-|...
T Consensus 3 ~rf-C~~CG~~t~~~~~g~~r~C~~Cg~~ 30 (32)
T PF09297_consen 3 HRF-CGRCGAPTKPAPGGWARRCPSCGHE 30 (32)
T ss_dssp TSB--TTT--BEEE-SSSS-EEESSSS-E
T ss_pred Ccc-cCcCCccccCCCCcCEeECCCCcCE
Confidence 667 78887654 368888753
No 152
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=28.83 E-value=30 Score=32.61 Aligned_cols=40 Identities=23% Similarity=0.613 Sum_probs=28.7
Q ss_pred ccccccccccccceEEec----CC--CcccccchhhCC----CCCcccccc
Q 019204 294 PDLCVICLEQEYNAVFFP----CG--HLCCCLICSSRL----TNCPLCRRR 334 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~p----Cg--H~~~C~~C~~~~----~~CP~CR~~ 334 (344)
...|+||-..+.-.++.. =| |+. |.-|.... .+||.|...
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~-CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLS-CSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEE-cCCCCCcccccCccCCCCCCC
Confidence 459999999986655433 33 444 88888775 489999864
No 153
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=28.82 E-value=1.8e+02 Score=24.33 Aligned_cols=18 Identities=33% Similarity=0.431 Sum_probs=12.8
Q ss_pred ccEEeEEEECCceEEEEe
Q 019204 109 SKEVPWYLDDGTGCVFVV 126 (344)
Q Consensus 109 ~~~vpF~L~D~tg~v~V~ 126 (344)
...+-|.|.|+...+.|.
T Consensus 70 ~~~~~F~ltD~~~~i~V~ 87 (148)
T PRK13254 70 GLTVRFVVTDGNATVPVV 87 (148)
T ss_pred CCEEEEEEEeCCeEEEEE
Confidence 345689999986666665
No 154
>cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle dependent manner in response to DNA dam
Probab=28.74 E-value=2.4e+02 Score=20.82 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=16.4
Q ss_pred ccccCCceeEEeeeEEecCCCceE
Q 019204 171 RLLPTGTSLTVVGEAVKDDIGTVR 194 (344)
Q Consensus 171 ~~L~~G~~l~vvGe~~~d~~g~~~ 194 (344)
..+.+|+.+.+.|.+..- +|.+.
T Consensus 46 ~~~~~g~~v~v~G~v~~~-~g~~q 68 (95)
T cd04478 46 EPIEEGTYVRVFGNLKSF-QGKKS 68 (95)
T ss_pred cccccCCEEEEEEEEccc-CCeeE
Confidence 458899999999997544 34443
No 155
>PRK01343 zinc-binding protein; Provisional
Probab=28.50 E-value=28 Score=24.06 Aligned_cols=11 Identities=27% Similarity=0.779 Sum_probs=6.5
Q ss_pred CCCcccccccc
Q 019204 326 TNCPLCRRRID 336 (344)
Q Consensus 326 ~~CP~CR~~i~ 336 (344)
..||+|++++.
T Consensus 10 ~~CP~C~k~~~ 20 (57)
T PRK01343 10 RPCPECGKPST 20 (57)
T ss_pred CcCCCCCCcCc
Confidence 35666666544
No 156
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=28.10 E-value=36 Score=28.41 Aligned_cols=28 Identities=36% Similarity=0.642 Sum_probs=18.6
Q ss_pred ceEEecCCCcccccchhhCCCCCcccccc
Q 019204 306 NAVFFPCGHLCCCLICSSRLTNCPLCRRR 334 (344)
Q Consensus 306 ~~~~~pCgH~~~C~~C~~~~~~CP~CR~~ 334 (344)
..+...|||.. +..=...++.||-|...
T Consensus 112 ~l~C~~Cg~~~-~~~~~~~l~~Cp~C~~~ 139 (146)
T PF07295_consen 112 TLVCENCGHEV-ELTHPERLPPCPKCGHT 139 (146)
T ss_pred eEecccCCCEE-EecCCCcCCCCCCCCCC
Confidence 34556788877 44434557899999764
No 157
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=27.93 E-value=27 Score=29.83 Aligned_cols=24 Identities=21% Similarity=0.448 Sum_probs=16.1
Q ss_pred CCCcccccchhhCCCCCccccccccceE
Q 019204 312 CGHLCCCLICSSRLTNCPLCRRRIDQVV 339 (344)
Q Consensus 312 CgH~~~C~~C~~~~~~CP~CR~~i~~~~ 339 (344)
|||.+ .. ..-..||+|..+-..+.
T Consensus 140 CGy~~--~g--e~P~~CPiCga~k~~F~ 163 (166)
T COG1592 140 CGYTH--EG--EAPEVCPICGAPKEKFE 163 (166)
T ss_pred CCCcc--cC--CCCCcCCCCCChHHHhh
Confidence 48875 34 34468999998765544
No 158
>KOG1705 consensus Uncharacterized conserved protein, contains CXXC motifs [Function unknown]
Probab=27.86 E-value=27 Score=26.41 Aligned_cols=34 Identities=29% Similarity=0.645 Sum_probs=24.5
Q ss_pred cccccccccccceEEecCCCcccccchhhCC--CCCccccc
Q 019204 295 DLCVICLEQEYNAVFFPCGHLCCCLICSSRL--TNCPLCRR 333 (344)
Q Consensus 295 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~--~~CP~CR~ 333 (344)
..|+||-+-. -||.-+-.|.+|.-.. .+|.+|..
T Consensus 28 gkC~ICDS~V-----RP~tlVRiC~eC~~Gs~q~~ciic~~ 63 (110)
T KOG1705|consen 28 GKCVICDSYV-----RPCTLVRICDECNYGSYQGRCVICGG 63 (110)
T ss_pred Cccccccccc-----ccceeeeeehhcCCccccCceEEecC
Confidence 4788886543 4777677799997654 57888876
No 159
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=27.73 E-value=2.2e+02 Score=29.35 Aligned_cols=52 Identities=21% Similarity=0.394 Sum_probs=35.3
Q ss_pred ccCCceeEEeeeEEecCCCceEEe---------------------------cCCCCceEeccCCHHHHHHHhhhhhHHHH
Q 019204 173 LPTGTSLTVVGEAVKDDIGTVRIQ---------------------------RPHKGPFYVSPKTIDELLENLGKWARWYK 225 (344)
Q Consensus 173 L~~G~~l~vvGe~~~d~~g~~~i~---------------------------~p~~~~f~ls~~~~~~L~~~l~~~ar~~~ 225 (344)
+.+|.-+-++|++. ..+|.+.|. .|.+-.|++-+.-.+.|.-++...++..+
T Consensus 259 IevGdiV~ViG~V~-~r~g~lQiE~~~me~L~G~ea~eVr~rid~ald~~AeP~~~~~lvdse~lE~L~p~m~~vAk~ir 337 (715)
T COG1107 259 IEVGDIVEVIGEVT-RRDGRLQIEIEAMEKLTGDEAAEVRKRIDEALDRRAEPADVGFLVDSEVLEALKPDMVDVAKEIR 337 (715)
T ss_pred CCCCceEEEEEEEe-ecCCcEEEeehhhHHhhCchHHHHHHHHHHHHhhccCCcccccccCHHHHHHhhHHHHHHHHHHH
Confidence 67899999999954 447777644 45555577766556667666666665554
No 160
>PF10882 bPH_5: Bacterial PH domain; InterPro: IPR020482 This entry contains membrane proteins with no known function.
Probab=27.15 E-value=1.4e+02 Score=22.49 Aligned_cols=29 Identities=24% Similarity=0.453 Sum_probs=21.9
Q ss_pred CCceEEecCCCCceEeccCCHHHHHHHhhh
Q 019204 190 IGTVRIQRPHKGPFYVSPKTIDELLENLGK 219 (344)
Q Consensus 190 ~g~~~i~~p~~~~f~ls~~~~~~L~~~l~~ 219 (344)
..-+.|.... +.|++|+.+.+++++.++.
T Consensus 70 ~~~i~I~t~~-~~y~isp~~~~~fi~~l~~ 98 (100)
T PF10882_consen 70 KNVILIKTKD-KTYVISPEDPEEFIEALKK 98 (100)
T ss_pred CCEEEEEECC-ceEEEcCCCHHHHHHHHHh
Confidence 3455565544 7899999999999988764
No 161
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=26.94 E-value=4.6e+02 Score=23.61 Aligned_cols=65 Identities=15% Similarity=0.205 Sum_probs=35.4
Q ss_pred CCceeEEeeeEEecCCCceEEecCCCC-c-eEecc--CCHHHHHHHhhhhh----HHHHHHHhhhHHHHHHHHHHH
Q 019204 175 TGTSLTVVGEAVKDDIGTVRIQRPHKG-P-FYVSP--KTIDELLENLGKWA----RWYKYASFGLTIFGAFLIAKR 242 (344)
Q Consensus 175 ~G~~l~vvGe~~~d~~g~~~i~~p~~~-~-f~ls~--~~~~~L~~~l~~~a----r~~~~~~i~l~~~G~~ll~~~ 242 (344)
+.+.+||+|... ++.+.==..++| . .++.. .+.+++..+..... ..++.+++++..+|+.+++..
T Consensus 132 ~~~~vTVVa~q~---g~~l~py~t~~g~~i~ll~~G~~s~~e~f~~~~~~n~~~tW~lR~~G~llmf~G~~~~~~~ 204 (248)
T PF07787_consen 132 PPGPVTVVAKQR---GNTLVPYTTKNGDKILLLEEGKVSAEEMFAKEHSANNTLTWILRFIGWLLMFIGFFLLFSP 204 (248)
T ss_pred CCceEEEEEEEe---CCEEEEEEecCCCEEEEEEcCCcCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677899999853 223321122233 3 34433 47788777544443 244456666666676665443
No 162
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=26.77 E-value=1.2e+02 Score=30.44 Aligned_cols=29 Identities=24% Similarity=0.517 Sum_probs=19.8
Q ss_pred cccccccccc----cceEEecCCCcccccchhhC
Q 019204 295 DLCVICLEQE----YNAVFFPCGHLCCCLICSSR 324 (344)
Q Consensus 295 ~~C~iC~~~~----~~~~~~pCgH~~~C~~C~~~ 324 (344)
..|..|.... +.-..-.||-+| |..|...
T Consensus 902 ~~cmacq~pf~afrrrhhcrncggif-cg~cs~a 934 (990)
T KOG1819|consen 902 EQCMACQMPFNAFRRRHHCRNCGGIF-CGKCSCA 934 (990)
T ss_pred hhhhhccCcHHHHHHhhhhcccCcee-ecccccC
Confidence 3677776632 233456899999 9999755
No 163
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=26.64 E-value=23 Score=22.99 Aligned_cols=22 Identities=32% Similarity=0.735 Sum_probs=14.2
Q ss_pred cccccchhhCC--------CCCcccccccc
Q 019204 315 LCCCLICSSRL--------TNCPLCRRRID 336 (344)
Q Consensus 315 ~~~C~~C~~~~--------~~CP~CR~~i~ 336 (344)
.+.|..|-..+ ..||.|..++.
T Consensus 3 ~y~C~~CG~~~~~~~~~~~~~Cp~CG~~~~ 32 (46)
T PRK00398 3 EYKCARCGREVELDEYGTGVRCPYCGYRIL 32 (46)
T ss_pred EEECCCCCCEEEECCCCCceECCCCCCeEE
Confidence 34466665442 47999998764
No 164
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=26.37 E-value=33 Score=22.51 Aligned_cols=35 Identities=34% Similarity=0.768 Sum_probs=19.3
Q ss_pred cccccccccc--eEEecCCCcc----cccchhhCC------CCCccc
Q 019204 297 CVICLEQEYN--AVFFPCGHLC----CCLICSSRL------TNCPLC 331 (344)
Q Consensus 297 C~iC~~~~~~--~~~~pCgH~~----~C~~C~~~~------~~CP~C 331 (344)
|-||++...+ ..+.||+-.. +-..|..+. .+|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 7788886433 5677987332 356676553 468877
No 165
>PF12669 P12: Virus attachment protein p12 family
Probab=26.24 E-value=60 Score=22.46 Aligned_cols=6 Identities=50% Similarity=0.362 Sum_probs=2.9
Q ss_pred ccchhh
Q 019204 2 ISWGGI 7 (344)
Q Consensus 2 ~~~g~~ 7 (344)
||++++
T Consensus 2 iII~~I 7 (58)
T PF12669_consen 2 IIIGII 7 (58)
T ss_pred eeHHHH
Confidence 345555
No 166
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.23 E-value=21 Score=35.50 Aligned_cols=30 Identities=30% Similarity=0.587 Sum_probs=25.5
Q ss_pred ccccccccccccc-eEEecCCCcccccchhhC
Q 019204 294 PDLCVICLEQEYN-AVFFPCGHLCCCLICSSR 324 (344)
Q Consensus 294 ~~~C~iC~~~~~~-~~~~pCgH~~~C~~C~~~ 324 (344)
...|-||.+.... ++.++|||.+ |..|...
T Consensus 70 ~~~c~ic~~~~~~~~~~~~c~H~~-c~~cw~~ 100 (444)
T KOG1815|consen 70 DVQCGICVESYDGEIIGLGCGHPF-CPPCWTG 100 (444)
T ss_pred cccCCcccCCCcchhhhcCCCcHH-HHHHHHH
Confidence 4589999998874 8888999999 9999765
No 167
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=25.15 E-value=2e+02 Score=18.61 Aligned_cols=12 Identities=17% Similarity=0.445 Sum_probs=5.6
Q ss_pred HHHHhhhHHHHH
Q 019204 225 KYASFGLTIFGA 236 (344)
Q Consensus 225 ~~~~i~l~~~G~ 236 (344)
.|.+.+++++.+
T Consensus 8 VW~sYg~t~l~l 19 (45)
T TIGR03141 8 VWLAYGITALVL 19 (45)
T ss_pred HHHHHHHHHHHH
Confidence 345555544433
No 168
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=24.98 E-value=31 Score=19.02 Aligned_cols=18 Identities=28% Similarity=0.886 Sum_probs=9.9
Q ss_pred ccchhhCC----CCCccccccc
Q 019204 318 CLICSSRL----TNCPLCRRRI 335 (344)
Q Consensus 318 C~~C~~~~----~~CP~CR~~i 335 (344)
|..|-..+ .-||.|..++
T Consensus 2 Cp~CG~~~~~~~~fC~~CG~~l 23 (23)
T PF13240_consen 2 CPNCGAEIEDDAKFCPNCGTPL 23 (23)
T ss_pred CcccCCCCCCcCcchhhhCCcC
Confidence 45555444 4577776543
No 169
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=24.83 E-value=76 Score=19.67 Aligned_cols=21 Identities=38% Similarity=0.445 Sum_probs=12.4
Q ss_pred ccchhhHHHHHHHHH--HHHHhc
Q 019204 2 ISWGGISCCLSGAAL--YLLGRS 22 (344)
Q Consensus 2 ~~~g~~~~~~~~~~~--~~~~~~ 22 (344)
+++|.+..-++|++. |..||+
T Consensus 9 iVLGlipvTl~GlfvaAylQYrR 31 (37)
T CHL00008 9 IVLGLIPITLAGLFVTAYLQYRR 31 (37)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhh
Confidence 356666666777775 444443
No 170
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=24.77 E-value=76 Score=19.68 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=12.4
Q ss_pred ccchhhHHHHHHHHH--HHHHhc
Q 019204 2 ISWGGISCCLSGAAL--YLLGRS 22 (344)
Q Consensus 2 ~~~g~~~~~~~~~~~--~~~~~~ 22 (344)
+++|.+..-++|++. |..||+
T Consensus 9 iVLGlipiTl~GlfvaAylQYrR 31 (37)
T PRK00665 9 IVLGLIPVTLAGLFVAAWNQYKR 31 (37)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhc
Confidence 356666666777775 444443
No 171
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=24.66 E-value=44 Score=22.29 Aligned_cols=38 Identities=29% Similarity=0.569 Sum_probs=16.3
Q ss_pred ccccccccccceE-EecCCCcccccchhhCC--------CCCcccccc
Q 019204 296 LCVICLEQEYNAV-FFPCGHLCCCLICSSRL--------TNCPLCRRR 334 (344)
Q Consensus 296 ~C~iC~~~~~~~~-~~pCgH~~~C~~C~~~~--------~~CP~CR~~ 334 (344)
.|++.+......+ -..|.|.- |.+=..-+ =.||+|.++
T Consensus 4 ~CPls~~~i~~P~Rg~~C~H~~-CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 4 RCPLSFQRIRIPVRGKNCKHLQ-CFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp B-TTTSSB-SSEEEETT--SS---EEHHHHHHHHHHS---B-TTT---
T ss_pred eCCCCCCEEEeCccCCcCcccc-eECHHHHHHHhhccCCeECcCCcCc
Confidence 5777777665544 34799997 65432211 279999874
No 172
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=24.18 E-value=22 Score=31.64 Aligned_cols=20 Identities=35% Similarity=1.067 Sum_probs=15.4
Q ss_pred cccchhhCC----CCCcccccccc
Q 019204 317 CCLICSSRL----TNCPLCRRRID 336 (344)
Q Consensus 317 ~C~~C~~~~----~~CP~CR~~i~ 336 (344)
.|.+|-.++ +.||+|+.+-.
T Consensus 251 ~ClsChqqIHRNAPiCPlCKaKsR 274 (286)
T KOG4451|consen 251 VCLSCHQQIHRNAPICPLCKAKSR 274 (286)
T ss_pred HHHHHHHHHhcCCCCCcchhhccc
Confidence 488887765 79999987643
No 173
>cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE). The DNA polymerase holoenzyme of E. coli contains two copies of this replicative polymerase, each of which copies a different DNA strand. This group also contains Bacillus subtilis DnaE. Replication in B. subtilis and Staphylococcus aureus requires two different type C polymerases, polC and DnaE, both of which are thought to be included in the DNA polymerase holoenzyme. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.
Probab=24.15 E-value=1.1e+02 Score=21.44 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=17.4
Q ss_pred eccccCCceeEEeeeEEecCCCceEE
Q 019204 170 GRLLPTGTSLTVVGEAVKDDIGTVRI 195 (344)
Q Consensus 170 E~~L~~G~~l~vvGe~~~d~~g~~~i 195 (344)
+..|.+|+.+.+.|.+... .|.+.+
T Consensus 45 ~~~l~~g~~v~v~G~v~~~-~~~~~l 69 (84)
T cd04485 45 RDLLKEDALLLVEGKVERR-DGGLRL 69 (84)
T ss_pred HHHhcCCCEEEEEEEEEec-CCceEE
Confidence 3568889999999997654 344433
No 174
>PLN02400 cellulose synthase
Probab=24.07 E-value=52 Score=36.23 Aligned_cols=43 Identities=28% Similarity=0.669 Sum_probs=28.5
Q ss_pred ccccccccccccc----eEEe---cCCCcccccchhhC-----CCCCccccccccc
Q 019204 294 PDLCVICLEQEYN----AVFF---PCGHLCCCLICSSR-----LTNCPLCRRRIDQ 337 (344)
Q Consensus 294 ~~~C~iC~~~~~~----~~~~---pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 337 (344)
...|.||-|..-- -.|+ .|+--+ |+.|+.= .+.||.|++...+
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPV-CRpCYEYERkeGnq~CPQCkTrYkR 90 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPV-CRPCYEYERKDGTQCCPQCKTRYRR 90 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCcc-ccchhheecccCCccCcccCCcccc
Confidence 4599999885321 1344 444445 9999842 2789999987653
No 175
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=23.96 E-value=79 Score=20.80 Aligned_cols=22 Identities=14% Similarity=0.179 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHhc-chhhhHhhcc
Q 019204 10 CLSGAALYLLGRS-SGRDAELLKT 32 (344)
Q Consensus 10 ~~~~~~~~~~~~~-~~~~~~~l~~ 32 (344)
++.|+++| .|++ +++..+..+.
T Consensus 21 ~F~gi~~w-~~~~~~k~~~e~aa~ 43 (49)
T PF05545_consen 21 FFIGIVIW-AYRPRNKKRFEEAAN 43 (49)
T ss_pred HHHHHHHH-HHcccchhhHHHHHc
Confidence 44455555 5553 3444444433
No 176
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.94 E-value=39 Score=34.19 Aligned_cols=20 Identities=10% Similarity=0.124 Sum_probs=10.7
Q ss_pred hhcccccccchhHHHHhhcc
Q 019204 29 LLKTVTRVNQLEELAHLLDG 48 (344)
Q Consensus 29 ~l~~~~~~~~~~~L~~~l~~ 48 (344)
.|-=+|+.....++.+.++.
T Consensus 28 vLvlvP~i~L~~Q~~~~l~~ 47 (505)
T TIGR00595 28 VLVLVPEIALTPQMIQRFKY 47 (505)
T ss_pred EEEEeCcHHHHHHHHHHHHH
Confidence 34445666655555555443
No 177
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=23.59 E-value=1e+02 Score=32.48 Aligned_cols=30 Identities=17% Similarity=0.321 Sum_probs=21.5
Q ss_pred EEeccccCCceeEEeeeEEecCCCceEEecC
Q 019204 168 RIGRLLPTGTSLTVVGEAVKDDIGTVRIQRP 198 (344)
Q Consensus 168 ~~E~~L~~G~~l~vvGe~~~d~~g~~~i~~p 198 (344)
|....|++|+.+++.|.+... .|.+.|.+|
T Consensus 103 ~~~~~l~~G~~~~v~Gkv~~~-~~~~qm~~P 132 (681)
T PRK10917 103 YLKKQLKVGKRVAVYGKVKRG-KYGLEMVHP 132 (681)
T ss_pred HHHhhCCCCCEEEEEEEEEec-CCeEEEEcC
Confidence 445679999999999997653 455655555
No 178
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=23.45 E-value=33 Score=21.26 Aligned_cols=13 Identities=31% Similarity=0.894 Sum_probs=9.6
Q ss_pred CCCCccccccccc
Q 019204 325 LTNCPLCRRRIDQ 337 (344)
Q Consensus 325 ~~~CP~CR~~i~~ 337 (344)
...||.|...+.+
T Consensus 26 ~~~CP~Cg~~~~r 38 (41)
T smart00834 26 LATCPECGGDVRR 38 (41)
T ss_pred CCCCCCCCCccee
Confidence 3589999986544
No 179
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=23.39 E-value=42 Score=31.55 Aligned_cols=29 Identities=28% Similarity=0.749 Sum_probs=25.8
Q ss_pred ccccccccccccceEEecCC--Ccccccchhh
Q 019204 294 PDLCVICLEQEYNAVFFPCG--HLCCCLICSS 323 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pCg--H~~~C~~C~~ 323 (344)
.-.|..|-+-...+..++|. |+. |-+|..
T Consensus 221 ni~C~~Ctdv~~~vlvf~Cns~Hvt-C~dCFr 251 (446)
T KOG0006|consen 221 NITCITCTDVRSPVLVFQCNSRHVT-CLDCFR 251 (446)
T ss_pred cceeEEecCCccceEEEecCCceee-hHHhhh
Confidence 34899999999999999999 998 999986
No 180
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=23.17 E-value=3.2e+02 Score=22.47 Aligned_cols=29 Identities=24% Similarity=0.160 Sum_probs=13.7
Q ss_pred cCCHHHHHHHhhhhhHHHHHHHhhhHHHH
Q 019204 207 PKTIDELLENLGKWARWYKYASFGLTIFG 235 (344)
Q Consensus 207 ~~~~~~L~~~l~~~ar~~~~~~i~l~~~G 235 (344)
..+.+++..........+...+++++.+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~G~~i~~~v~ 131 (154)
T PF09835_consen 103 LMHWSDLLESLWEFGLPFLLGSLILGIVL 131 (154)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455554444444444444555555443
No 181
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=23.13 E-value=69 Score=26.55 Aligned_cols=16 Identities=19% Similarity=0.351 Sum_probs=9.7
Q ss_pred HHHHhcchhhhHhhcc
Q 019204 17 YLLGRSSGRDAELLKT 32 (344)
Q Consensus 17 ~~~~~~~~~~~~~l~~ 32 (344)
|++.+++++.+.++++
T Consensus 50 ~lcssRKkKaaAAi~e 65 (189)
T PF05568_consen 50 YLCSSRKKKAAAAIEE 65 (189)
T ss_pred HHHhhhhHHHHhhhhh
Confidence 5456666666677743
No 182
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=23.10 E-value=38 Score=23.88 Aligned_cols=11 Identities=36% Similarity=1.201 Sum_probs=9.2
Q ss_pred CCCcccccccc
Q 019204 326 TNCPLCRRRID 336 (344)
Q Consensus 326 ~~CP~CR~~i~ 336 (344)
..||+|++++.
T Consensus 7 v~CP~C~k~~~ 17 (62)
T PRK00418 7 VNCPTCGKPVE 17 (62)
T ss_pred ccCCCCCCccc
Confidence 48999999874
No 183
>cd04482 RPA2_OBF_like RPA2_OBF_like: A subgroup of uncharacterized archaeal OB folds with similarity to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle depende
Probab=22.57 E-value=3.3e+02 Score=20.38 Aligned_cols=18 Identities=39% Similarity=0.519 Sum_probs=13.2
Q ss_pred ccccCCceeEEeeeEEec
Q 019204 171 RLLPTGTSLTVVGEAVKD 188 (344)
Q Consensus 171 ~~L~~G~~l~vvGe~~~d 188 (344)
.-|.+|+.|.+.|.+...
T Consensus 46 ~~l~~Gd~V~v~G~v~~y 63 (91)
T cd04482 46 RLLIPGDEVTVYGSVRPG 63 (91)
T ss_pred CCCCCCCEEEEEEEEecC
Confidence 447888888888886544
No 184
>PLN02436 cellulose synthase A
Probab=22.46 E-value=75 Score=35.02 Aligned_cols=43 Identities=26% Similarity=0.641 Sum_probs=29.1
Q ss_pred cccccccccccc----ceEEecCC---CcccccchhhCC-----CCCccccccccc
Q 019204 294 PDLCVICLEQEY----NAVFFPCG---HLCCCLICSSRL-----TNCPLCRRRIDQ 337 (344)
Q Consensus 294 ~~~C~iC~~~~~----~~~~~pCg---H~~~C~~C~~~~-----~~CP~CR~~i~~ 337 (344)
...|.||-|..- --.|+.|. -- .|..|+.-- +.||.|++...+
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fp-vCr~Cyeyer~eg~~~Cpqckt~Y~r 90 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFP-VCRPCYEYERREGNQACPQCKTRYKR 90 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCc-cccchhhhhhhcCCccCcccCCchhh
Confidence 459999988532 12455554 33 499998532 689999987653
No 185
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=22.27 E-value=40 Score=20.25 Aligned_cols=15 Identities=27% Similarity=0.649 Sum_probs=11.0
Q ss_pred CCCccccccccceEe
Q 019204 326 TNCPLCRRRIDQVVR 340 (344)
Q Consensus 326 ~~CP~CR~~i~~~~~ 340 (344)
..||+|..+-..+.+
T Consensus 18 ~~CP~Cg~~~~~F~~ 32 (33)
T cd00350 18 WVCPVCGAPKDKFEK 32 (33)
T ss_pred CcCcCCCCcHHHcEE
Confidence 489999887666554
No 186
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=22.26 E-value=2e+02 Score=23.69 Aligned_cols=13 Identities=23% Similarity=0.202 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 019204 237 FLIAKRVIRCILQ 249 (344)
Q Consensus 237 ~ll~~~~~r~~~~ 249 (344)
+++.+..+|++++
T Consensus 35 ~~~~~~~~r~~~~ 47 (146)
T PF14316_consen 35 ILLLWRLWRRWRR 47 (146)
T ss_pred HHHHHHHHHHHHc
Confidence 3444444555443
No 187
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.08 E-value=21 Score=29.97 Aligned_cols=25 Identities=28% Similarity=0.691 Sum_probs=19.7
Q ss_pred CCcccccchhhC-CCCCccccccccce
Q 019204 313 GHLCCCLICSSR-LTNCPLCRRRIDQV 338 (344)
Q Consensus 313 gH~~~C~~C~~~-~~~CP~CR~~i~~~ 338 (344)
.+-| |..|... +..||.|..+|.+.
T Consensus 27 ~~~f-C~kCG~~tI~~Cp~C~~~IrG~ 52 (158)
T PF10083_consen 27 REKF-CSKCGAKTITSCPNCSTPIRGD 52 (158)
T ss_pred HHHH-HHHhhHHHHHHCcCCCCCCCCc
Confidence 3556 9999776 48999999999763
No 188
>PF15102 TMEM154: TMEM154 protein family
Probab=21.77 E-value=29 Score=28.89 Aligned_cols=16 Identities=19% Similarity=0.081 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHhcch
Q 019204 9 CCLSGAALYLLGRSSG 24 (344)
Q Consensus 9 ~~~~~~~~~~~~~~~~ 24 (344)
|+++++|+.++||+++
T Consensus 71 LLl~vV~lv~~~kRkr 86 (146)
T PF15102_consen 71 LLLSVVCLVIYYKRKR 86 (146)
T ss_pred HHHHHHHheeEEeecc
Confidence 3444555543444433
No 189
>PRK00523 hypothetical protein; Provisional
Probab=21.60 E-value=3.2e+02 Score=19.88 Aligned_cols=29 Identities=10% Similarity=-0.069 Sum_probs=14.7
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 019204 223 WYKYASFGLTIFGAFLIAKRVIRCILQRK 251 (344)
Q Consensus 223 ~~~~~~i~l~~~G~~ll~~~~~r~~~~~r 251 (344)
.|..+.++.+++|++.-++.+.++++..-
T Consensus 6 l~I~l~i~~li~G~~~Gffiark~~~k~l 34 (72)
T PRK00523 6 LALGLGIPLLIVGGIIGYFVSKKMFKKQI 34 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555566555555555554433
No 190
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=21.44 E-value=42 Score=22.52 Aligned_cols=14 Identities=29% Similarity=0.676 Sum_probs=8.3
Q ss_pred CCccccccccceEe
Q 019204 327 NCPLCRRRIDQVVR 340 (344)
Q Consensus 327 ~CP~CR~~i~~~~~ 340 (344)
.||+|..+-..+.+
T Consensus 36 ~CP~C~a~K~~F~~ 49 (50)
T cd00730 36 VCPVCGAGKDDFEP 49 (50)
T ss_pred CCCCCCCcHHHcEe
Confidence 67777666555443
No 191
>PRK13872 conjugal transfer protein TrbF; Provisional
Probab=21.23 E-value=1.1e+02 Score=27.41 Aligned_cols=32 Identities=19% Similarity=0.301 Sum_probs=22.1
Q ss_pred CCCCceEeccCCHHHHHHHhhhhhHHHHHHHh
Q 019204 198 PHKGPFYVSPKTIDELLENLGKWARWYKYASF 229 (344)
Q Consensus 198 p~~~~f~ls~~~~~~L~~~l~~~ar~~~~~~i 229 (344)
+.+.||+-....+++....+.+.++.|+.+++
T Consensus 15 ~~~~~y~~a~~~weer~~~~~~~~~~w~~va~ 46 (228)
T PRK13872 15 EPETPYQRAAQVWDERIGSARVQARNWRLMAF 46 (228)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33457887888888888888777776653443
No 192
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=21.22 E-value=2.4e+02 Score=18.22 Aligned_cols=8 Identities=38% Similarity=0.941 Sum_probs=3.4
Q ss_pred HHHhhhHH
Q 019204 226 YASFGLTI 233 (344)
Q Consensus 226 ~~~i~l~~ 233 (344)
|.+.++++
T Consensus 8 W~sYg~t~ 15 (46)
T PF04995_consen 8 WSSYGVTA 15 (46)
T ss_pred HHHHHHHH
Confidence 44444444
No 193
>PRK07218 replication factor A; Provisional
Probab=21.09 E-value=1.1e+02 Score=30.16 Aligned_cols=57 Identities=28% Similarity=0.310 Sum_probs=32.0
Q ss_pred EEEEEEeec---CCCccccCCCceEEEEEEEEEEEEEEeecCCceEeceeeEeecccEEeEEEECCceEEEEe
Q 019204 57 VSVSGRVGS---ETPISCEYSGLRGVIVEETTERHFLKHNDAGSWIQDSALMLSMSKEVPWYLDDGTGCVFVV 126 (344)
Q Consensus 57 V~v~G~v~~---~~pl~s~~s~~~~V~~~~~i~e~~~~~~~~~~w~~~~~~v~~~~~~vpF~L~D~tg~v~V~ 126 (344)
|+|+|++.. ++.|.-.-+.+.=++....-.+| | ++--..--.+.|.|+|+||.+.+.
T Consensus 281 Vev~G~Iv~i~~gsgli~rCP~C~r~v~~~~C~~h-------G------~ve~~~dlrik~vLDDGtg~~~~~ 340 (423)
T PRK07218 281 VELVGNIISVRDGSGLIERCPECGRVIQKGQCRSH-------G------AVEGEDDLRIKAILDDGTGSVTVI 340 (423)
T ss_pred EEEEEEEEEeccCCcceecCcCccccccCCcCCCC-------C------CcCCeeeeEEEEEEECCCCeEEEE
Confidence 599999987 55565433333333332222222 1 121112234589999999998885
No 194
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=21.02 E-value=13 Score=25.18 Aligned_cols=11 Identities=36% Similarity=1.168 Sum_probs=8.0
Q ss_pred CCCcccccccc
Q 019204 326 TNCPLCRRRID 336 (344)
Q Consensus 326 ~~CP~CR~~i~ 336 (344)
..||+|...+.
T Consensus 32 v~CPiC~~~~~ 42 (54)
T PF05605_consen 32 VVCPICSSRVT 42 (54)
T ss_pred ccCCCchhhhh
Confidence 47999987544
No 195
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=20.66 E-value=31 Score=23.85 Aligned_cols=11 Identities=27% Similarity=1.153 Sum_probs=5.8
Q ss_pred CCccccccccc
Q 019204 327 NCPLCRRRIDQ 337 (344)
Q Consensus 327 ~CP~CR~~i~~ 337 (344)
.||+|++++.-
T Consensus 4 ~CP~C~k~~~~ 14 (57)
T PF03884_consen 4 KCPICGKPVEW 14 (57)
T ss_dssp E-TTT--EEE-
T ss_pred cCCCCCCeecc
Confidence 69999988764
Done!