Query 019204
Match_columns 344
No_of_seqs 271 out of 1486
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 12:30:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019204.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019204hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ea5_A Cell growth regulator w 99.6 2.1E-15 7.3E-20 108.7 4.3 55 290-344 11-65 (68)
2 2vje_B MDM4 protein; proto-onc 99.5 6E-15 2.1E-19 104.7 1.2 52 293-344 6-63 (63)
3 2vje_A E3 ubiquitin-protein li 99.4 2.9E-14 9.9E-19 101.5 0.7 51 294-344 8-64 (64)
4 2yho_A E3 ubiquitin-protein li 99.4 2.1E-13 7.1E-18 101.2 3.6 50 295-344 19-68 (79)
5 4ic3_A E3 ubiquitin-protein li 99.4 3.1E-13 1E-17 99.0 3.5 51 294-344 24-74 (74)
6 2ecg_A Baculoviral IAP repeat- 99.3 9E-14 3.1E-18 102.2 -1.3 51 294-344 25-75 (75)
7 3t6p_A Baculoviral IAP repeat- 99.1 6.6E-11 2.3E-15 111.3 4.1 51 294-344 295-345 (345)
8 2d8t_A Dactylidin, ring finger 98.9 6.2E-10 2.1E-14 80.4 3.6 45 292-337 13-61 (71)
9 2ysl_A Tripartite motif-contai 98.9 1.3E-09 4.6E-14 78.9 4.2 45 292-337 18-69 (73)
10 1chc_A Equine herpes virus-1 r 98.8 1.1E-09 3.7E-14 78.3 2.5 49 294-343 5-58 (68)
11 2ecn_A Ring finger protein 141 98.8 9.1E-10 3.1E-14 79.2 2.0 48 293-342 14-65 (70)
12 2csy_A Zinc finger protein 183 98.8 1.6E-09 5.4E-14 80.4 3.2 45 292-337 13-61 (81)
13 2ea6_A Ring finger protein 4; 98.8 2.1E-09 7.2E-14 76.8 2.1 45 292-337 13-68 (69)
14 2yur_A Retinoblastoma-binding 98.7 3.8E-09 1.3E-13 76.9 2.7 46 291-337 12-64 (74)
15 4ayc_A E3 ubiquitin-protein li 98.7 2.5E-09 8.7E-14 87.6 1.8 44 295-339 54-101 (138)
16 2djb_A Polycomb group ring fin 98.7 5.2E-09 1.8E-13 75.7 3.3 46 292-338 13-63 (72)
17 2xeu_A Ring finger protein 4; 98.7 3.2E-09 1.1E-13 74.7 1.7 48 294-342 3-63 (64)
18 1bor_A Transcription factor PM 98.7 3.7E-09 1.3E-13 72.7 1.8 43 294-337 6-49 (56)
19 3ng2_A RNF4, snurf, ring finge 98.7 2.7E-09 9.1E-14 76.8 0.9 48 294-342 10-70 (71)
20 2ecm_A Ring finger and CHY zin 98.7 5.4E-09 1.9E-13 71.3 2.4 42 294-336 5-54 (55)
21 2kiz_A E3 ubiquitin-protein li 98.7 6.2E-09 2.1E-13 74.5 2.7 47 293-340 13-66 (69)
22 2ecy_A TNF receptor-associated 98.7 4.8E-09 1.7E-13 74.5 2.0 45 292-337 13-62 (66)
23 2ect_A Ring finger protein 126 98.7 1.1E-08 3.9E-13 75.0 3.4 45 292-337 13-64 (78)
24 2ct2_A Tripartite motif protei 98.7 1E-08 3.4E-13 77.0 3.1 44 292-336 13-67 (88)
25 2egp_A Tripartite motif-contai 98.6 9.8E-09 3.4E-13 75.4 2.7 44 293-337 11-65 (79)
26 2ecw_A Tripartite motif-contai 98.6 1.8E-08 6.2E-13 74.9 4.0 45 292-337 17-71 (85)
27 2ecv_A Tripartite motif-contai 98.6 1.7E-08 5.8E-13 75.0 3.6 45 292-337 17-71 (85)
28 1iym_A EL5; ring-H2 finger, ub 98.6 1.8E-08 6.2E-13 68.6 2.6 42 294-336 5-54 (55)
29 1x4j_A Ring finger protein 38; 98.6 1.5E-08 5.2E-13 73.8 2.2 44 293-337 22-72 (75)
30 2l0b_A E3 ubiquitin-protein li 98.6 1.7E-08 5.9E-13 76.5 2.4 44 293-337 39-89 (91)
31 2y1n_A E3 ubiquitin-protein li 98.6 2.9E-08 9.7E-13 94.1 4.3 47 295-342 333-384 (389)
32 1e4u_A Transcriptional repress 98.6 1E-08 3.4E-13 75.5 0.9 49 293-342 10-67 (78)
33 2ep4_A Ring finger protein 24; 98.6 1.2E-08 4.1E-13 74.1 1.1 48 293-341 14-68 (74)
34 2ysj_A Tripartite motif-contai 98.5 4.6E-08 1.6E-12 68.6 3.9 39 292-331 18-63 (63)
35 3ztg_A E3 ubiquitin-protein li 98.5 2.7E-08 9.2E-13 75.4 2.8 43 292-335 11-60 (92)
36 3l11_A E3 ubiquitin-protein li 98.5 3.1E-08 1.1E-12 78.4 2.9 45 292-337 13-62 (115)
37 1g25_A CDK-activating kinase a 98.5 2.5E-08 8.5E-13 70.5 0.9 43 294-337 3-55 (65)
38 1t1h_A Gspef-atpub14, armadill 98.5 4.1E-08 1.4E-12 72.0 2.1 45 292-337 6-55 (78)
39 3fl2_A E3 ubiquitin-protein li 98.5 3.3E-08 1.1E-12 79.3 1.7 43 294-337 52-99 (124)
40 2ecj_A Tripartite motif-contai 98.4 6.1E-08 2.1E-12 66.6 1.9 38 293-331 14-58 (58)
41 3lrq_A E3 ubiquitin-protein li 98.4 4.7E-08 1.6E-12 75.4 1.3 42 294-336 22-69 (100)
42 2ckl_A Polycomb group ring fin 98.4 9.3E-08 3.2E-12 74.7 2.1 43 294-337 15-62 (108)
43 1z6u_A NP95-like ring finger p 98.4 7.7E-08 2.6E-12 79.9 1.7 43 294-337 78-125 (150)
44 2y43_A E3 ubiquitin-protein li 98.4 9.2E-08 3.1E-12 73.5 1.7 43 294-337 22-69 (99)
45 1jm7_A BRCA1, breast cancer ty 98.3 7.6E-08 2.6E-12 75.5 0.6 42 295-337 22-70 (112)
46 2ckl_B Ubiquitin ligase protei 98.3 1.2E-07 4E-12 80.0 1.4 43 293-336 53-101 (165)
47 3hct_A TNF receptor-associated 98.3 1.9E-07 6.5E-12 74.2 2.4 45 292-337 16-65 (118)
48 1jm7_B BARD1, BRCA1-associated 98.3 1.9E-07 6.6E-12 74.0 1.6 42 294-336 22-66 (117)
49 1wgm_A Ubiquitin conjugation f 98.3 6.1E-07 2.1E-11 68.9 4.0 46 291-337 19-69 (98)
50 2kr4_A Ubiquitin conjugation f 98.2 5.1E-07 1.7E-11 67.4 3.2 45 292-337 12-60 (85)
51 4ap4_A E3 ubiquitin ligase RNF 98.2 3.3E-07 1.1E-11 73.8 1.9 48 294-342 7-67 (133)
52 1v87_A Deltex protein 2; ring- 98.2 2E-07 6.8E-12 73.5 0.6 42 295-337 26-94 (114)
53 2kre_A Ubiquitin conjugation f 98.2 6E-07 2.1E-11 69.2 3.2 46 291-337 26-75 (100)
54 1rmd_A RAG1; V(D)J recombinati 98.2 3.3E-07 1.1E-11 72.5 1.7 43 294-337 23-70 (116)
55 2ecl_A Ring-box protein 2; RNF 98.2 4.6E-07 1.6E-11 67.0 1.9 42 295-337 16-76 (81)
56 3knv_A TNF receptor-associated 98.1 3.9E-07 1.3E-11 74.7 -0.1 43 292-335 29-76 (141)
57 4ap4_A E3 ubiquitin ligase RNF 98.1 8.4E-07 2.9E-11 71.4 1.7 49 293-342 71-132 (133)
58 2c2l_A CHIP, carboxy terminus 98.1 1.6E-06 5.5E-11 78.8 3.2 45 291-336 205-254 (281)
59 2f42_A STIP1 homology and U-bo 97.9 8.5E-06 2.9E-10 69.2 5.4 46 291-337 103-153 (179)
60 3hcs_A TNF receptor-associated 97.9 3.1E-06 1.1E-10 71.5 2.3 46 291-337 15-65 (170)
61 3dpl_R Ring-box protein 1; ubi 97.9 2.8E-06 9.7E-11 66.0 1.6 42 294-336 37-100 (106)
62 4a0k_B E3 ubiquitin-protein li 97.7 4.9E-06 1.7E-10 65.8 0.4 42 294-336 48-111 (117)
63 2yu4_A E3 SUMO-protein ligase 97.7 1.2E-05 4.1E-10 61.0 2.5 41 293-334 6-59 (94)
64 3htk_C E3 SUMO-protein ligase 97.6 6E-05 2.1E-09 67.3 5.8 44 292-336 179-231 (267)
65 3vk6_A E3 ubiquitin-protein li 97.6 3.4E-05 1.2E-09 58.2 3.4 45 296-341 3-53 (101)
66 2d8s_A Cellular modulator of i 97.5 4.4E-05 1.5E-09 56.1 2.6 43 294-337 15-70 (80)
67 1wim_A KIAA0161 protein; ring 97.3 2.7E-05 9.3E-10 58.9 -0.2 40 294-334 5-61 (94)
68 2bay_A PRE-mRNA splicing facto 97.0 0.00027 9.2E-09 49.0 2.1 48 295-343 4-58 (61)
69 1vyx_A ORF K3, K3RING; zinc-bi 96.0 0.0016 5.5E-08 44.8 0.8 43 294-336 6-58 (60)
70 3k1l_B Fancl; UBC, ring, RWD, 95.1 0.0043 1.5E-07 57.4 0.3 44 293-337 307-373 (381)
71 2ct0_A Non-SMC element 1 homol 94.4 0.042 1.4E-06 39.3 4.1 44 294-338 15-65 (74)
72 2ko5_A Ring finger protein Z; 86.4 0.18 6E-06 37.4 0.6 46 294-341 28-77 (99)
73 2zet_C Melanophilin; complex, 81.6 2.6 8.9E-05 34.3 5.8 41 293-334 67-117 (153)
74 2jun_A Midline-1; B-BOX, TRIM, 80.7 0.42 1.4E-05 35.8 0.6 29 295-324 4-35 (101)
75 2cs3_A Protein C14ORF4, MY039 78.9 0.52 1.8E-05 33.7 0.6 30 294-324 15-48 (93)
76 3nw0_A Non-structural maintena 67.5 1.9 6.4E-05 37.8 1.5 43 294-337 180-229 (238)
77 1zbd_B Rabphilin-3A; G protein 65.0 16 0.00056 28.8 6.4 40 294-334 55-107 (134)
78 2jne_A Hypothetical protein YF 45.4 6.2 0.00021 29.3 0.8 42 293-339 31-75 (101)
79 3kdf_D Replication protein A 3 41.9 1E+02 0.0036 23.6 7.7 22 171-193 78-99 (132)
80 2knc_B Integrin beta-3; transm 39.9 97 0.0033 21.8 7.3 23 239-261 30-52 (79)
81 2hw2_A Rifampin ADP-ribosyl tr 35.3 24 0.00081 27.8 2.7 48 118-187 67-114 (143)
82 1weo_A Cellulose synthase, cat 34.5 11 0.00039 27.4 0.7 43 294-337 16-70 (93)
83 3pwf_A Rubrerythrin; non heme 33.5 18 0.00061 29.7 1.9 31 307-341 139-169 (170)
84 1lko_A Rubrerythrin all-iron(I 32.8 19 0.00066 30.1 2.0 30 307-340 156-186 (191)
85 1z60_A TFIIH basal transcripti 30.4 34 0.0012 22.8 2.5 35 296-331 17-58 (59)
86 2k1k_A Ephrin type-A receptor 30.1 29 0.00099 21.0 1.9 12 10-22 26-37 (38)
87 2d8v_A Zinc finger FYVE domain 30.0 18 0.00063 24.7 1.1 30 294-325 8-38 (67)
88 1mm2_A MI2-beta; PHD, zinc fin 28.2 38 0.0013 22.5 2.5 11 293-303 8-18 (61)
89 3c5k_A HD6, histone deacetylas 27.9 29 0.001 26.2 2.1 26 294-320 24-49 (109)
90 2g45_A Ubiquitin carboxyl-term 26.8 35 0.0012 26.7 2.4 27 294-320 34-60 (129)
91 1nnx_A Protein YGIW; structura 26.1 1.3E+02 0.0045 22.6 5.5 17 172-188 77-93 (109)
92 3mjh_B Early endosome antigen 26.0 19 0.00065 21.2 0.5 9 328-336 8-16 (34)
93 1fp0_A KAP-1 corepressor; PHD 25.5 40 0.0014 24.5 2.3 14 291-304 22-35 (88)
94 2fiy_A Protein FDHE homolog; F 25.4 24 0.00084 31.9 1.4 42 293-334 181-231 (309)
95 2egq_A FHL1 protein; LIM domai 24.0 41 0.0014 22.9 2.2 19 318-336 6-26 (77)
96 3i2d_A E3 SUMO-protein ligase 22.7 33 0.0011 31.8 1.8 41 294-335 249-298 (371)
97 1q90_G Cytochrome B6F complex 22.5 52 0.0018 19.6 2.0 15 2-16 9-23 (37)
98 2rdd_B UPF0092 membrane protei 22.2 52 0.0018 19.5 2.0 21 10-30 11-31 (37)
99 2ehe_A Four and A half LIM dom 22.2 34 0.0011 23.7 1.4 19 318-336 6-26 (82)
100 2gmg_A Hypothetical protein PF 22.1 34 0.0012 25.7 1.4 20 310-334 71-93 (105)
101 2cuq_A Four and A half LIM dom 22.0 35 0.0012 23.5 1.5 18 318-335 6-25 (80)
102 3zyq_A Hepatocyte growth facto 21.6 79 0.0027 26.9 3.9 43 293-336 163-221 (226)
103 3vhs_A ATPase wrnip1; zinc fin 20.5 28 0.00096 19.0 0.5 9 327-335 8-16 (29)
104 6rxn_A Rubredoxin; electron tr 20.3 46 0.0016 21.0 1.5 14 327-340 32-45 (46)
No 1
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=2.1e-15 Score=108.68 Aligned_cols=55 Identities=27% Similarity=0.664 Sum_probs=50.0
Q ss_pred CCccccccccccccccceEEecCCCcccccchhhCCCCCccccccccceEecccC
Q 019204 290 DRVMPDLCVICLEQEYNAVFFPCGHLCCCLICSSRLTNCPLCRRRIDQVVRTFRH 344 (344)
Q Consensus 290 ~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~~~i~~~ 344 (344)
...+...|+||++++++++++||||+++|..|+..+..||+||++|..++++|.+
T Consensus 11 ~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~~~i~~~ 65 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFALSGP 65 (68)
T ss_dssp SCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCSSCTTTCCCCCCEECCCSS
T ss_pred cCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcCCCCCCCCcchhceEEeecC
Confidence 3344568999999999999999999977999999999999999999999999974
No 2
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.47 E-value=6e-15 Score=104.72 Aligned_cols=52 Identities=29% Similarity=0.815 Sum_probs=47.3
Q ss_pred cccccccccccccceEEe--cCCCcccccchhhCCC----CCccccccccceEecccC
Q 019204 293 MPDLCVICLEQEYNAVFF--PCGHLCCCLICSSRLT----NCPLCRRRIDQVVRTFRH 344 (344)
Q Consensus 293 ~~~~C~iC~~~~~~~~~~--pCgH~~~C~~C~~~~~----~CP~CR~~i~~~~~i~~~ 344 (344)
....|+||++++++.+++ ||||+++|..|+..+. .||+||++|..++++|.|
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~s 63 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFIA 63 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEEEC
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEecC
Confidence 356899999999998888 9999977999998874 999999999999999976
No 3
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.40 E-value=2.9e-14 Score=101.50 Aligned_cols=51 Identities=35% Similarity=0.823 Sum_probs=46.6
Q ss_pred ccccccccccccceEEe--cCCCcccccchhhCC----CCCccccccccceEecccC
Q 019204 294 PDLCVICLEQEYNAVFF--PCGHLCCCLICSSRL----TNCPLCRRRIDQVVRTFRH 344 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~--pCgH~~~C~~C~~~~----~~CP~CR~~i~~~~~i~~~ 344 (344)
...|+||++++++++++ ||||+++|..|+..+ ..||+||++|..++++|.|
T Consensus 8 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~~ 64 (64)
T 2vje_A 8 IEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTYFP 64 (64)
T ss_dssp GSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEECC
T ss_pred cCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeeecC
Confidence 45899999999999998 999998899999886 3699999999999999975
No 4
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.37 E-value=2.1e-13 Score=101.20 Aligned_cols=50 Identities=42% Similarity=1.121 Sum_probs=47.3
Q ss_pred cccccccccccceEEecCCCcccccchhhCCCCCccccccccceEecccC
Q 019204 295 DLCVICLEQEYNAVFFPCGHLCCCLICSSRLTNCPLCRRRIDQVVRTFRH 344 (344)
Q Consensus 295 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~~~i~~~ 344 (344)
..|+||++..++++++||||.++|..|+..+..||+||.+|...+++|.+
T Consensus 19 ~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~p 68 (79)
T 2yho_A 19 MLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQHVYLP 68 (79)
T ss_dssp TBCTTTSSSBCCEEEETTCBCCBCHHHHTTCSBCTTTCCBCCEEEECBCT
T ss_pred CEeEEeCcccCcEEEECCCCHHHHHHHHHhcCcCCCCCchhhCeEEEEeC
Confidence 48999999999999999999977999999999999999999999999964
No 5
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.35 E-value=3.1e-13 Score=99.05 Aligned_cols=51 Identities=33% Similarity=0.870 Sum_probs=47.3
Q ss_pred ccccccccccccceEEecCCCcccccchhhCCCCCccccccccceEecccC
Q 019204 294 PDLCVICLEQEYNAVFFPCGHLCCCLICSSRLTNCPLCRRRIDQVVRTFRH 344 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~~~i~~~ 344 (344)
...|+||++...+++++||||.++|..|+..+..||+||++|...+++|.|
T Consensus 24 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~S 74 (74)
T 4ic3_A 24 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKILMS 74 (74)
T ss_dssp HTBCTTTSSSBCCEEEETTCCBCCCHHHHTTCSBCTTTCCBCSEEEECBC-
T ss_pred CCCCCCCCCCCCCEEEcCCCChhHHHHhhhcCccCCCcCcCccCcEEEeeC
Confidence 358999999999999999999955999999999999999999999999986
No 6
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=9e-14 Score=102.16 Aligned_cols=51 Identities=35% Similarity=0.903 Sum_probs=47.7
Q ss_pred ccccccccccccceEEecCCCcccccchhhCCCCCccccccccceEecccC
Q 019204 294 PDLCVICLEQEYNAVFFPCGHLCCCLICSSRLTNCPLCRRRIDQVVRTFRH 344 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~~~i~~~ 344 (344)
...|+||++...+++++||||.++|..|+..+..||+||.+|...+++|.|
T Consensus 25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~S 75 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIFMS 75 (75)
T ss_dssp HHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHCSBCTTTCCBCCCCCBCCCC
T ss_pred CCCCCcCCCCCCCEEEecCCCHHHHHHHhhCCCCCccCCceecCcEEEecC
Confidence 458999999999999999999955999999999999999999999999986
No 7
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=99.05 E-value=6.6e-11 Score=111.31 Aligned_cols=51 Identities=43% Similarity=1.031 Sum_probs=46.8
Q ss_pred ccccccccccccceEEecCCCcccccchhhCCCCCccccccccceEecccC
Q 019204 294 PDLCVICLEQEYNAVFFPCGHLCCCLICSSRLTNCPLCRRRIDQVVRTFRH 344 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~~~i~~~ 344 (344)
...|+||++...+++++||||.++|..|+..+..||+||.+|...+++|.|
T Consensus 295 ~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~~~CP~CR~~i~~~~~i~~s 345 (345)
T 3t6p_A 295 ERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRTFLS 345 (345)
T ss_dssp TCBCTTTSSSBCCEEEETTCCEEECTTTGGGCSBCTTTCCBCCEEEECC--
T ss_pred CCCCCccCCcCCceEEcCCCChhHhHHHHhcCCcCCCCCCCccCeEEeecC
Confidence 458999999999999999999966999999999999999999999999976
No 8
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=6.2e-10 Score=80.44 Aligned_cols=45 Identities=33% Similarity=0.857 Sum_probs=39.3
Q ss_pred ccccccccccccccceEEecCCCcccccchhhCC----CCCccccccccc
Q 019204 292 VMPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQ 337 (344)
Q Consensus 292 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~ 337 (344)
.....|.||++...+.+.+||||.| |..|+..+ ..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSLPCKHVF-CYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEETTTEEE-EHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCCCEEccCCCHH-HHHHHHHHHHCCCcCcCcCchhCH
Confidence 3456899999999999999999998 99999865 589999999864
No 9
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=1.3e-09 Score=78.93 Aligned_cols=45 Identities=33% Similarity=0.837 Sum_probs=38.9
Q ss_pred ccccccccccccccceEEecCCCcccccchhhCC-------CCCccccccccc
Q 019204 292 VMPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL-------TNCPLCRRRIDQ 337 (344)
Q Consensus 292 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-------~~CP~CR~~i~~ 337 (344)
.....|.||++...+.+.+||||.| |..|+..+ ..||+||+++..
T Consensus 18 ~~~~~C~IC~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 18 QEEVICPICLDILQKPVTIDCGHNF-CLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCBCTTTCSBCSSEEECTTCCEE-EHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred ccCCEeccCCcccCCeEEcCCCChh-hHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 3456999999999999999999999 99998764 279999998864
No 10
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.83 E-value=1.1e-09 Score=78.32 Aligned_cols=49 Identities=39% Similarity=0.945 Sum_probs=42.0
Q ss_pred ccccccccccccc-eEEecCCCcccccchhhCC----CCCccccccccceEeccc
Q 019204 294 PDLCVICLEQEYN-AVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQVVRTFR 343 (344)
Q Consensus 294 ~~~C~iC~~~~~~-~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~~~~i~~ 343 (344)
...|.||++...+ .+.+||||.| |..|+..+ ..||+||.++...++.+.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 58 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPCLHAF-CYVCITRWIRQNPTCPLCKVPVESVVHTIE 58 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEEE-STTHHHHHHHHSCSTTTTCCCCCCEECCCC
T ss_pred CCCCeeCCccccCCcEecCCCCee-HHHHHHHHHhCcCcCcCCChhhHhhhhccc
Confidence 3589999999988 5888999998 99999764 689999999998877654
No 11
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=9.1e-10 Score=79.24 Aligned_cols=48 Identities=27% Similarity=0.800 Sum_probs=41.2
Q ss_pred cccccccccccccceEEecCCCcccccchhhCC----CCCccccccccceEecc
Q 019204 293 MPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQVVRTF 342 (344)
Q Consensus 293 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~~~~i~ 342 (344)
....|.||++...+ +++||||.| |..|+..+ ..||+||.++.....+|
T Consensus 14 ~~~~C~IC~~~~~~-~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 65 (70)
T 2ecn_A 14 DEEECCICMDGRAD-LILPCAHSF-CQKCIDKWSDRHRNCPICRLQMTGANESS 65 (70)
T ss_dssp CCCCCSSSCCSCCS-EEETTTEEE-CHHHHHHSSCCCSSCHHHHHCTTCCCCCC
T ss_pred CCCCCeeCCcCccC-cccCCCCcc-cHHHHHHHHHCcCcCCCcCCcccCCCccc
Confidence 35689999999999 889999998 99999865 68999999998766554
No 12
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=1.6e-09 Score=80.36 Aligned_cols=45 Identities=27% Similarity=0.597 Sum_probs=39.5
Q ss_pred ccccccccccccccceEEecCCCcccccchhhCC----CCCccccccccc
Q 019204 292 VMPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQ 337 (344)
Q Consensus 292 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~ 337 (344)
.....|.||++...+.+++||||.| |..|+..+ ..||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (81)
T 2csy_A 13 EIPFRCFICRQAFQNPVVTKCRHYF-CESCALEHFRATPRCYICDQPTGG 61 (81)
T ss_dssp CCCSBCSSSCSBCCSEEECTTSCEE-EHHHHHHHHHHCSBCSSSCCBCCS
T ss_pred CCCCCCcCCCchhcCeeEccCCCHh-HHHHHHHHHHCCCcCCCcCccccc
Confidence 3456899999999999999999999 99999775 589999999863
No 13
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=2.1e-09 Score=76.83 Aligned_cols=45 Identities=31% Similarity=0.747 Sum_probs=37.7
Q ss_pred ccccccccccccccce-------EEecCCCcccccchhhCC----CCCccccccccc
Q 019204 292 VMPDLCVICLEQEYNA-------VFFPCGHLCCCLICSSRL----TNCPLCRRRIDQ 337 (344)
Q Consensus 292 ~~~~~C~iC~~~~~~~-------~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~ 337 (344)
.....|.||++...+. +++||||.| |..|+..+ ..||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEE-EHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChh-cHHHHHHHHHcCCCCCCCCCccCc
Confidence 3456899999987665 889999999 99999875 689999998864
No 14
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.73 E-value=3.8e-09 Score=76.90 Aligned_cols=46 Identities=30% Similarity=0.635 Sum_probs=39.1
Q ss_pred CccccccccccccccceEEec-CCCcccccchhhCC------CCCccccccccc
Q 019204 291 RVMPDLCVICLEQEYNAVFFP-CGHLCCCLICSSRL------TNCPLCRRRIDQ 337 (344)
Q Consensus 291 ~~~~~~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~~------~~CP~CR~~i~~ 337 (344)
......|.||++...+.+.+| |||.| |..|+... ..||+||+++..
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 12 IPDELLCLICKDIMTDAVVIPCCGNSY-CDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp SCGGGSCSSSCCCCTTCEECSSSCCEE-CTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCCCCcCCChHHhCCeEcCCCCCHH-HHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 344569999999999999999 99999 99998764 489999997643
No 15
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.72 E-value=2.5e-09 Score=87.63 Aligned_cols=44 Identities=34% Similarity=0.782 Sum_probs=39.0
Q ss_pred cccccccccccceEEecCCCcccccchhhCC----CCCccccccccceE
Q 019204 295 DLCVICLEQEYNAVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQVV 339 (344)
Q Consensus 295 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~~~ 339 (344)
..|+||++...+++.+||||.| |..|+... ..||+||.+|....
T Consensus 54 ~~C~iC~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 54 LQCIICSEYFIEAVTLNCAHSF-CSYCINEWMKRKIECPICRKDIKSKT 101 (138)
T ss_dssp SBCTTTCSBCSSEEEETTSCEE-EHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred CCCcccCcccCCceECCCCCCc-cHHHHHHHHHcCCcCCCCCCcCCCCC
Confidence 4799999999999999999998 99998764 68999999997654
No 16
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=5.2e-09 Score=75.70 Aligned_cols=46 Identities=30% Similarity=0.558 Sum_probs=39.5
Q ss_pred ccccccccccccccceEEe-cCCCcccccchhhCC----CCCccccccccce
Q 019204 292 VMPDLCVICLEQEYNAVFF-PCGHLCCCLICSSRL----TNCPLCRRRIDQV 338 (344)
Q Consensus 292 ~~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~----~~CP~CR~~i~~~ 338 (344)
.....|.||++...+.+.+ ||||.| |..|+... ..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 13 TPYILCSICKGYLIDATTITECLHTF-CKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp CGGGSCTTTSSCCSSCEECSSSCCEE-CHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred CCCCCCCCCChHHHCcCEECCCCCHH-HHHHHHHHHHcCCcCCCcCcccCcc
Confidence 3456999999999998887 999999 99999764 6899999998754
No 17
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.71 E-value=3.2e-09 Score=74.71 Aligned_cols=48 Identities=29% Similarity=0.720 Sum_probs=40.3
Q ss_pred ccccccccccccce-------EEecCCCcccccchhhCC----CCCcccccccc--ceEecc
Q 019204 294 PDLCVICLEQEYNA-------VFFPCGHLCCCLICSSRL----TNCPLCRRRID--QVVRTF 342 (344)
Q Consensus 294 ~~~C~iC~~~~~~~-------~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~--~~~~i~ 342 (344)
...|.||++...+. +.+||||.| |..|...+ ..||+||.++. .+.++|
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEE-EHHHHHHHHHHCSBCTTTCCBCTTTCEEECC
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCch-hHHHHHHHHHcCCCCCCCCccCCccceeeee
Confidence 35899999977664 888999999 99999765 58999999987 577776
No 18
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.70 E-value=3.7e-09 Score=72.69 Aligned_cols=43 Identities=23% Similarity=0.524 Sum_probs=38.1
Q ss_pred ccccccccccccceEEecCCCcccccchhhCC-CCCccccccccc
Q 019204 294 PDLCVICLEQEYNAVFFPCGHLCCCLICSSRL-TNCPLCRRRIDQ 337 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-~~CP~CR~~i~~ 337 (344)
...|.||++...+.+.+||||.| |..|+... ..||+||+.+..
T Consensus 6 ~~~C~IC~~~~~~p~~l~CgH~f-C~~Ci~~~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 6 FLRCQQCQAEAKCPKLLPCLHTL-CSGCLEASGMQCPICQAPWPL 49 (56)
T ss_dssp CSSCSSSCSSCBCCSCSTTSCCS-BTTTCSSSSSSCSSCCSSSSC
T ss_pred CCCceEeCCccCCeEEcCCCCcc-cHHHHccCCCCCCcCCcEeec
Confidence 45899999999999999999999 99999875 589999998763
No 19
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.69 E-value=2.7e-09 Score=76.84 Aligned_cols=48 Identities=29% Similarity=0.737 Sum_probs=39.7
Q ss_pred ccccccccccccce-------EEecCCCcccccchhhCC----CCCcccccccc--ceEecc
Q 019204 294 PDLCVICLEQEYNA-------VFFPCGHLCCCLICSSRL----TNCPLCRRRID--QVVRTF 342 (344)
Q Consensus 294 ~~~C~iC~~~~~~~-------~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~--~~~~i~ 342 (344)
...|.||++...+. +.+||||.| |..|+..+ ..||+||.++. .+.++|
T Consensus 10 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 10 TVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp CCBCTTTCCBHHHHHTTTCCEEECTTSCEE-EHHHHHHHHHHCSBCTTTCCBCCCCSCCCCC
T ss_pred CCCCcccChhhhccccccCCeEeCCCCChH-hHHHHHHHHHcCCCCCCCCCccChhheeecc
Confidence 45899999987665 889999999 99999764 69999999987 355555
No 20
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.69 E-value=5.4e-09 Score=71.26 Aligned_cols=42 Identities=38% Similarity=0.801 Sum_probs=36.2
Q ss_pred ccccccccccccc----eEEecCCCcccccchhhCC----CCCcccccccc
Q 019204 294 PDLCVICLEQEYN----AVFFPCGHLCCCLICSSRL----TNCPLCRRRID 336 (344)
Q Consensus 294 ~~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~ 336 (344)
...|.||++...+ ++++||||.| |..|+..+ ..||+||.++.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLL-HRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEE-ETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcc-cHHHHHHHHHcCCcCCCCCCcCC
Confidence 3589999998755 8889999999 99999875 68999999875
No 21
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.69 E-value=6.2e-09 Score=74.55 Aligned_cols=47 Identities=30% Similarity=0.722 Sum_probs=38.2
Q ss_pred cccccccccccc---cceEEecCCCcccccchhhCC----CCCccccccccceEe
Q 019204 293 MPDLCVICLEQE---YNAVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQVVR 340 (344)
Q Consensus 293 ~~~~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~~~~ 340 (344)
....|.||++.. ..++.+||||.| |..|+..+ ..||+||..+....+
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHLF-HQVCVDQWLITNKKCPICRVDIEAQLP 66 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCEE-EHHHHHHHHHHCSBCTTTCSBSCSCCC
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCHH-HHHHHHHHHHcCCCCcCcCccccCcCC
Confidence 356899997754 567889999999 99999864 689999999876543
No 22
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=4.8e-09 Score=74.51 Aligned_cols=45 Identities=24% Similarity=0.468 Sum_probs=38.8
Q ss_pred ccccccccccccccceEEecCCCcccccchhhCC-----CCCccccccccc
Q 019204 292 VMPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL-----TNCPLCRRRIDQ 337 (344)
Q Consensus 292 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~CR~~i~~ 337 (344)
.+...|.||++...+.+.+||||.| |..|+... ..||+||+++..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQTECGHRF-CESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCCEECTTTCCEESSCCCCSSSCCC-CHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CcCCCCCCCChHhcCeeECCCCCHH-HHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 3456899999999999989999999 99998753 589999998864
No 23
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.66 E-value=1.1e-08 Score=75.04 Aligned_cols=45 Identities=27% Similarity=0.575 Sum_probs=36.0
Q ss_pred ccccccccccccc---cceEEecCCCcccccchhhCC----CCCccccccccc
Q 019204 292 VMPDLCVICLEQE---YNAVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQ 337 (344)
Q Consensus 292 ~~~~~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~ 337 (344)
.....|.||++.. ..+..+||||.| |..|+..+ ..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLF-HDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEE-ETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCee-cHHHHHHHHHcCCcCcCcCCccCC
Confidence 3456899997754 455778999999 99999764 689999999865
No 24
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=1e-08 Score=76.97 Aligned_cols=44 Identities=30% Similarity=0.707 Sum_probs=37.7
Q ss_pred ccccccccccccccc----eEEecCCCcccccchhhCC-------CCCcccccccc
Q 019204 292 VMPDLCVICLEQEYN----AVFFPCGHLCCCLICSSRL-------TNCPLCRRRID 336 (344)
Q Consensus 292 ~~~~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~-------~~CP~CR~~i~ 336 (344)
.+...|.||++...+ .+.+||||.| |..|+..+ ..||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTI-CRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEE-EHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred cCCCCCccCCccccccCCCeEECCCCChh-hHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 335689999999888 8999999999 99998765 48999999764
No 25
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.64 E-value=9.8e-09 Score=75.43 Aligned_cols=44 Identities=30% Similarity=0.650 Sum_probs=38.1
Q ss_pred cccccccccccccceEEecCCCcccccchhhCC-----------CCCccccccccc
Q 019204 293 MPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL-----------TNCPLCRRRIDQ 337 (344)
Q Consensus 293 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----------~~CP~CR~~i~~ 337 (344)
+...|.||++...+.+.+||||.| |..|+..+ ..||+||.++..
T Consensus 11 ~~~~C~IC~~~~~~p~~l~CgH~f-C~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 11 EEVTCPICLELLTEPLSLDCGHSL-CRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCEETTTTEECSSCCCCSSSCCC-CHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cCCCCcCCCcccCCeeECCCCCHH-HHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 356899999999999999999999 99999852 479999998853
No 26
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.64 E-value=1.8e-08 Score=74.85 Aligned_cols=45 Identities=33% Similarity=0.593 Sum_probs=38.7
Q ss_pred ccccccccccccccceEEecCCCcccccchhhC----------CCCCccccccccc
Q 019204 292 VMPDLCVICLEQEYNAVFFPCGHLCCCLICSSR----------LTNCPLCRRRIDQ 337 (344)
Q Consensus 292 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~----------~~~CP~CR~~i~~ 337 (344)
.....|.||++...+.+.+||||.| |..|+.. ...||+||..+..
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPVSADCNHSF-CRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CTTTSCTTTCSCCSSCEECTTSCCB-CHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred ccCCCCcCCChhhCcceeCCCCCHH-HHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 3456899999999999999999999 9999865 3579999998863
No 27
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.62 E-value=1.7e-08 Score=75.04 Aligned_cols=45 Identities=31% Similarity=0.697 Sum_probs=38.7
Q ss_pred ccccccccccccccceEEecCCCcccccchhhC----------CCCCccccccccc
Q 019204 292 VMPDLCVICLEQEYNAVFFPCGHLCCCLICSSR----------LTNCPLCRRRIDQ 337 (344)
Q Consensus 292 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~----------~~~CP~CR~~i~~ 337 (344)
.....|.||++...+.+.+||||.| |..|... ...||+||..+..
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 17 KEEVTCPICLELLTQPLSLDCGHSF-CQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCTTTCSCCSSCBCCSSSCCB-CTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred cCCCCCCCCCcccCCceeCCCCCHH-HHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 3456999999999999999999999 9999865 3589999998873
No 28
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.59 E-value=1.8e-08 Score=68.63 Aligned_cols=42 Identities=36% Similarity=0.791 Sum_probs=35.2
Q ss_pred ccccccccccccc---eEEec-CCCcccccchhhCC----CCCcccccccc
Q 019204 294 PDLCVICLEQEYN---AVFFP-CGHLCCCLICSSRL----TNCPLCRRRID 336 (344)
Q Consensus 294 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CP~CR~~i~ 336 (344)
...|.||++...+ ...+| |||.| |..|+..+ ..||+||+++.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~C~H~f-~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 5 GVECAVCLAELEDGEEARFLPRCGHGF-HAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp SCCCTTTCCCCCTTSCCEECSSSCCEE-CTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCcCccCCccccCCCceEECCCCCCcc-cHHHHHHHHHcCCcCcCCCCEeE
Confidence 3579999998766 77787 99999 99999764 68999999864
No 29
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.58 E-value=1.5e-08 Score=73.82 Aligned_cols=44 Identities=27% Similarity=0.690 Sum_probs=36.0
Q ss_pred cccccccccccccc---eEEecCCCcccccchhhCC----CCCccccccccc
Q 019204 293 MPDLCVICLEQEYN---AVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQ 337 (344)
Q Consensus 293 ~~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~ 337 (344)
....|.||++...+ +..+||||.| |..|+..+ ..||+||+++..
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~f-h~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEF-HAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEE-ETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHh-HHHHHHHHHHcCCcCcCcCCcCCC
Confidence 34689999976544 5788999998 99999875 689999998864
No 30
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.57 E-value=1.7e-08 Score=76.51 Aligned_cols=44 Identities=30% Similarity=0.578 Sum_probs=36.7
Q ss_pred cccccccccccccc---eEEecCCCcccccchhhCC----CCCccccccccc
Q 019204 293 MPDLCVICLEQEYN---AVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQ 337 (344)
Q Consensus 293 ~~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~ 337 (344)
....|.||++.... +..+||||.| |..|+..+ ..||+||..+..
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~F-h~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHYF-HKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEEE-EHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCcccChhhcCCCcEEecCCCChH-HHHHHHHHHHcCCcCcCcCccCCC
Confidence 34689999987666 7889999999 99998764 689999998764
No 31
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.57 E-value=2.9e-08 Score=94.07 Aligned_cols=47 Identities=36% Similarity=0.831 Sum_probs=42.0
Q ss_pred cccccccccccceEEecCCCcccccchhhC-----CCCCccccccccceEecc
Q 019204 295 DLCVICLEQEYNAVFFPCGHLCCCLICSSR-----LTNCPLCRRRIDQVVRTF 342 (344)
Q Consensus 295 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~~~~i~ 342 (344)
..|+||++...+++++||||.| |..|... ...||+||.++.....++
T Consensus 333 ~~C~ICle~~~~pv~lpCGH~F-C~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~ 384 (389)
T 2y1n_A 333 QLCKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIKGTEPIV 384 (389)
T ss_dssp SBCTTTSSSBCCEEEETTCCEE-CHHHHHHHHHHTCSBCTTTCCBCCEEEECS
T ss_pred CCCCccCcCCCCeEEeCCCChh-hHHHHHHHHhcCCCCCCCCCCccCCceeEe
Confidence 5899999999999999999999 9999874 468999999999877664
No 32
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.57 E-value=1e-08 Score=75.49 Aligned_cols=49 Identities=33% Similarity=0.783 Sum_probs=38.5
Q ss_pred cccccccccccc--cceEEec--CCCcccccchhhCC-----CCCccccccccceEecc
Q 019204 293 MPDLCVICLEQE--YNAVFFP--CGHLCCCLICSSRL-----TNCPLCRRRIDQVVRTF 342 (344)
Q Consensus 293 ~~~~C~iC~~~~--~~~~~~p--CgH~~~C~~C~~~~-----~~CP~CR~~i~~~~~i~ 342 (344)
+...|+||++.. .+..++| |||.| |..|...+ ..||.||+++......|
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~~CGH~f-C~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~ 67 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPCTCGYQI-CRFCWHRIRTDENGLCPACRKPYPEDPAVY 67 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSSTTSCCC-CHHHHHHHTTSSCSBCTTTCCBCSSCSSCC
T ss_pred cCCcCCccCccCccccccccccCCCCCc-CHHHHHHHHhcCCCCCCCCCCccCCCchhh
Confidence 346899999976 4556776 99999 99998765 48999999998654444
No 33
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=1.2e-08 Score=74.09 Aligned_cols=48 Identities=29% Similarity=0.647 Sum_probs=38.2
Q ss_pred cccccccccccc---cceEEecCCCcccccchhhCC----CCCccccccccceEec
Q 019204 293 MPDLCVICLEQE---YNAVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQVVRT 341 (344)
Q Consensus 293 ~~~~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~~~~i 341 (344)
....|.||++.. .....+||||.| |..|+..+ ..||+||.++.....+
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~f-~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 68 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICPCKHAF-HRKCLIKWLEVRKVCPLCNMPVLQLAQL 68 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEETTTEEE-EHHHHHHHHHHCSBCTTTCCBCSSCCSC
T ss_pred CCCCCcCCCcccCCCCcEEEcCCCCEe-cHHHHHHHHHcCCcCCCcCccccccccc
Confidence 356899999875 445667999999 99999774 6899999998775543
No 34
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=4.6e-08 Score=68.64 Aligned_cols=39 Identities=38% Similarity=0.909 Sum_probs=33.9
Q ss_pred ccccccccccccccceEEecCCCcccccchhhCC-------CCCccc
Q 019204 292 VMPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL-------TNCPLC 331 (344)
Q Consensus 292 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-------~~CP~C 331 (344)
.....|.||++...+.+.+||||.| |..|+..+ ..||+|
T Consensus 18 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKPVTIDCGHNF-CLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSCEECTTSSEE-CHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCeEEeCCCCcc-hHHHHHHHHHcCCCCCcCcCC
Confidence 3456999999999999999999999 99998754 379998
No 35
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.55 E-value=2.7e-08 Score=75.42 Aligned_cols=43 Identities=33% Similarity=0.719 Sum_probs=37.8
Q ss_pred ccccccccccccccceEEec-CCCcccccchhhCC------CCCccccccc
Q 019204 292 VMPDLCVICLEQEYNAVFFP-CGHLCCCLICSSRL------TNCPLCRRRI 335 (344)
Q Consensus 292 ~~~~~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~~------~~CP~CR~~i 335 (344)
.+...|.||++...+.+.+| |||.| |..|+... ..||+||.++
T Consensus 11 ~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 11 PDELLCLICKDIMTDAVVIPCCGNSY-CDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CTTTEETTTTEECSSCEECTTTCCEE-CHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CcCCCCCCCChhhcCceECCCCCCHH-HHHHHHHHHHhcCCCcCcCCCCcC
Confidence 34569999999999999999 99999 99998754 4899999986
No 36
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.53 E-value=3.1e-08 Score=78.37 Aligned_cols=45 Identities=36% Similarity=0.800 Sum_probs=39.2
Q ss_pred ccccccccccccccceEEecCCCcccccchhhCC-----CCCccccccccc
Q 019204 292 VMPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL-----TNCPLCRRRIDQ 337 (344)
Q Consensus 292 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~CR~~i~~ 337 (344)
.+...|.||++...+.+.+||||.| |..|+..+ ..||+||..+..
T Consensus 13 ~~~~~C~iC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVEPVTLPCNHTL-CKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSSCEECTTSCEE-CHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCceeEcCCCCHH-hHHHHHHHHhHCcCCCCCCCcccCc
Confidence 3356899999999999999999999 99999875 379999998863
No 37
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.48 E-value=2.5e-08 Score=70.52 Aligned_cols=43 Identities=30% Similarity=0.649 Sum_probs=34.4
Q ss_pred ccccccccc-cccce----EEecCCCcccccchhhCC-----CCCccccccccc
Q 019204 294 PDLCVICLE-QEYNA----VFFPCGHLCCCLICSSRL-----TNCPLCRRRIDQ 337 (344)
Q Consensus 294 ~~~C~iC~~-~~~~~----~~~pCgH~~~C~~C~~~~-----~~CP~CR~~i~~ 337 (344)
+..|+||++ ...+. +++||||.| |..|+..+ ..||+||.++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTL-CESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCE-EHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHh-HHHHHHHHHHcCCCcCCCCCCcccc
Confidence 357999999 44443 568999999 99998765 479999999863
No 38
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.48 E-value=4.1e-08 Score=71.99 Aligned_cols=45 Identities=18% Similarity=0.208 Sum_probs=38.8
Q ss_pred ccccccccccccccceEEecCCCcccccchhhCC-----CCCccccccccc
Q 019204 292 VMPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL-----TNCPLCRRRIDQ 337 (344)
Q Consensus 292 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~CR~~i~~ 337 (344)
.....|+||++...+.+.+||||.| |..|+... ..||+||.++..
T Consensus 6 ~~~~~C~IC~~~~~~Pv~~~CgH~f-c~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMKDPVIVSTGQTY-ERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCSSEEEETTTEEE-EHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred cccCCCCCccccccCCEEcCCCCee-cHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 3456999999999999999999999 99998653 579999999853
No 39
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.47 E-value=3.3e-08 Score=79.34 Aligned_cols=43 Identities=28% Similarity=0.673 Sum_probs=38.2
Q ss_pred ccccccccccccceEEecCCCcccccchhhCC-----CCCccccccccc
Q 019204 294 PDLCVICLEQEYNAVFFPCGHLCCCLICSSRL-----TNCPLCRRRIDQ 337 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~CR~~i~~ 337 (344)
...|+||++...+.+.+||||.| |..|+... ..||+||.++..
T Consensus 52 ~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFRPITTVCQHNV-CKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSSEEECTTSCEE-EHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcCcEEeeCCCcc-cHHHHHHHHhHCcCCCCCCCccCCC
Confidence 45899999999999999999999 99998653 489999999865
No 40
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=6.1e-08 Score=66.64 Aligned_cols=38 Identities=37% Similarity=0.914 Sum_probs=33.3
Q ss_pred cccccccccccccceEEecCCCcccccchhhCC-------CCCccc
Q 019204 293 MPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL-------TNCPLC 331 (344)
Q Consensus 293 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-------~~CP~C 331 (344)
....|.||++...+.+.+||||.| |..|+... ..||+|
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEPVIIECGHNF-CKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSCCCCSSCCCC-CHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCccEeCCCCCcc-CHHHHHHHHHhcCCCCCCCCC
Confidence 456899999999999999999999 99998654 579998
No 41
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.42 E-value=4.7e-08 Score=75.41 Aligned_cols=42 Identities=36% Similarity=0.886 Sum_probs=37.6
Q ss_pred ccccccccccccceEE-ecCCCcccccchhhCC-----CCCcccccccc
Q 019204 294 PDLCVICLEQEYNAVF-FPCGHLCCCLICSSRL-----TNCPLCRRRID 336 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~-----~~CP~CR~~i~ 336 (344)
...|.||++...+.+. ++|||.| |..|+... ..||+||.++.
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~F-C~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 22 VFRCFICMEKLRDARLCPHCSKLC-CFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCccCCccccCccccCCCCChh-hHHHHHHHHHHCcCCCCCCCCcCC
Confidence 4589999999999999 9999999 99999764 48999999875
No 42
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.38 E-value=9.3e-08 Score=74.72 Aligned_cols=43 Identities=28% Similarity=0.675 Sum_probs=38.3
Q ss_pred ccccccccccccceEEe-cCCCcccccchhhCC----CCCccccccccc
Q 019204 294 PDLCVICLEQEYNAVFF-PCGHLCCCLICSSRL----TNCPLCRRRIDQ 337 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~----~~CP~CR~~i~~ 337 (344)
...|.||++...+.+.+ ||||.| |..|+... ..||+||..+..
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 15 HLMCVLCGGYFIDATTIIECLHSF-CKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GTBCTTTSSBCSSEEEETTTCCEE-EHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred cCCCccCChHHhCcCEeCCCCChh-hHHHHHHHHHhCCcCcCCCccccc
Confidence 46899999999999988 999999 99998765 689999999874
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.38 E-value=7.7e-08 Score=79.86 Aligned_cols=43 Identities=37% Similarity=0.741 Sum_probs=38.2
Q ss_pred ccccccccccccceEEecCCCcccccchhhCC-----CCCccccccccc
Q 019204 294 PDLCVICLEQEYNAVFFPCGHLCCCLICSSRL-----TNCPLCRRRIDQ 337 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~CR~~i~~ 337 (344)
...|.||++...+.+.+||||.| |..|+... ..||+||.++..
T Consensus 78 ~~~C~IC~~~~~~pv~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 78 SFMCVCCQELVYQPVTTECFHNV-CKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp HTBCTTTSSBCSSEEECTTSCEE-EHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCEeecCChhhcCCEEcCCCCch-hHHHHHHHHHhCCCcCCCCCccCCC
Confidence 35899999999999999999999 99998764 379999999874
No 44
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.37 E-value=9.2e-08 Score=73.52 Aligned_cols=43 Identities=30% Similarity=0.702 Sum_probs=37.8
Q ss_pred ccccccccccccceEEe-cCCCcccccchhhCC----CCCccccccccc
Q 019204 294 PDLCVICLEQEYNAVFF-PCGHLCCCLICSSRL----TNCPLCRRRIDQ 337 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~----~~CP~CR~~i~~ 337 (344)
...|.||++...+.+.+ ||||.| |..|.... ..||+||..+..
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNIAMIIPQCSHNY-CSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCcccCChhhCCcCEECCCCCHh-hHHHHHHHHHCCCCCCCCCCcCCh
Confidence 45899999999999888 899999 99998764 589999998874
No 45
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.34 E-value=7.6e-08 Score=75.54 Aligned_cols=42 Identities=38% Similarity=0.859 Sum_probs=36.8
Q ss_pred cccccccccccceEEecCCCcccccchhhCC-------CCCccccccccc
Q 019204 295 DLCVICLEQEYNAVFFPCGHLCCCLICSSRL-------TNCPLCRRRIDQ 337 (344)
Q Consensus 295 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-------~~CP~CR~~i~~ 337 (344)
..|.||++...+.+.+||||.| |..|+... ..||+||.++..
T Consensus 22 ~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 22 LECPICLELIKEPVSTKCDHIF-CKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp TSCSSSCCCCSSCCBCTTSCCC-CSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCcccChhhcCeEECCCCCHH-HHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 4799999999999999999999 99998764 279999998863
No 46
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.32 E-value=1.2e-07 Score=79.96 Aligned_cols=43 Identities=30% Similarity=0.678 Sum_probs=37.5
Q ss_pred cccccccccccccceEEe-cCCCcccccchhhCC-----CCCcccccccc
Q 019204 293 MPDLCVICLEQEYNAVFF-PCGHLCCCLICSSRL-----TNCPLCRRRID 336 (344)
Q Consensus 293 ~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~-----~~CP~CR~~i~ 336 (344)
....|+||++...+.+.+ ||||.| |..|+..+ ..||+||.++.
T Consensus 53 ~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTTKECLHRF-CADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBCSSEEEETTTCCEE-EHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCcccChHhhCcCEeCCCCChh-HHHHHHHHHHhCcCCCCCCCCcCC
Confidence 345999999999999887 999999 99999764 47999999885
No 47
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.31 E-value=1.9e-07 Score=74.21 Aligned_cols=45 Identities=31% Similarity=0.575 Sum_probs=39.5
Q ss_pred ccccccccccccccceEEecCCCcccccchhhCC-----CCCccccccccc
Q 019204 292 VMPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL-----TNCPLCRRRIDQ 337 (344)
Q Consensus 292 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~CR~~i~~ 337 (344)
.....|+||++...+.+.+||||.| |..|+... ..||+||.++..
T Consensus 16 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 16 ESKYECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCcCChhhcCeEECCcCChh-hHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 3456999999999999999999999 99999774 389999999875
No 48
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.27 E-value=1.9e-07 Score=74.05 Aligned_cols=42 Identities=29% Similarity=0.564 Sum_probs=38.0
Q ss_pred ccccccccccccceEEe-cCCCcccccchhhCC--CCCcccccccc
Q 019204 294 PDLCVICLEQEYNAVFF-PCGHLCCCLICSSRL--TNCPLCRRRID 336 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~--~~CP~CR~~i~ 336 (344)
...|.||++...+.+.+ ||||.| |..|+... ..||+||.++.
T Consensus 22 ~~~C~IC~~~~~~pv~~~~CgH~f-C~~Ci~~~~~~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILREPVCLGGCEHIF-CSNCVSDCIGTGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCSSCBCCCSSSCCB-CTTTGGGGTTTBCSSSCCBCS
T ss_pred CCCCCCCChHhhCccEeCCCCCHH-HHHHHHHHhcCCCcCCCCcCc
Confidence 45899999999999999 999999 99999886 58999999884
No 49
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.25 E-value=6.1e-07 Score=68.86 Aligned_cols=46 Identities=15% Similarity=0.038 Sum_probs=39.9
Q ss_pred CccccccccccccccceEEecCC-CcccccchhhCC----CCCccccccccc
Q 019204 291 RVMPDLCVICLEQEYNAVFFPCG-HLCCCLICSSRL----TNCPLCRRRIDQ 337 (344)
Q Consensus 291 ~~~~~~C~iC~~~~~~~~~~pCg-H~~~C~~C~~~~----~~CP~CR~~i~~ 337 (344)
.+....|+||++-..+.+.+||| |.| |..|+... ..||+||+++..
T Consensus 19 ~p~~~~CpI~~~~m~dPV~~~cG~htf-~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDPVVLPSSRVTV-DRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred CcHhcCCcCccccccCCeECCCCCeEE-CHHHHHHHHHhCCCCCCCCCCCCh
Confidence 34567999999999999999999 999 99998764 589999998763
No 50
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.24 E-value=5.1e-07 Score=67.44 Aligned_cols=45 Identities=13% Similarity=0.000 Sum_probs=39.6
Q ss_pred ccccccccccccccceEEecCCCcccccchhhCC----CCCccccccccc
Q 019204 292 VMPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQ 337 (344)
Q Consensus 292 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~ 337 (344)
+....|+||++-..+.+.+||||.| |..|+... ..||+||+++..
T Consensus 12 p~~~~CpI~~~~m~dPV~~~cGhtf-~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPVRLPSGTVM-DRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhcCCeECCCCCEE-CHHHHHHHHhcCCCCCCCcCCCCh
Confidence 4457999999999999999999999 99998764 689999998753
No 51
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.22 E-value=3.3e-07 Score=73.84 Aligned_cols=48 Identities=29% Similarity=0.735 Sum_probs=39.1
Q ss_pred ccccccccccccce-------EEecCCCcccccchhhCC----CCCccccccccc--eEecc
Q 019204 294 PDLCVICLEQEYNA-------VFFPCGHLCCCLICSSRL----TNCPLCRRRIDQ--VVRTF 342 (344)
Q Consensus 294 ~~~C~iC~~~~~~~-------~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~--~~~i~ 342 (344)
...|.||++...+. +.++|||.| |..|+... ..||+||+.+.. ..++|
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~ 67 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHKRYHPIY 67 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTCCEE-EHHHHHHHHTTCSBCTTTCCBCTTTCEEECB
T ss_pred CCCCcccChhhhCccccccCeEecCCCChh-hHHHHHHHHHhCCCCCCCCCcCccccccccc
Confidence 45899999987776 899999999 99999764 589999999873 44444
No 52
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.22 E-value=2e-07 Score=73.46 Aligned_cols=42 Identities=26% Similarity=0.692 Sum_probs=33.4
Q ss_pred cccccccccccc------------------eEEecCCCcccccchhhCC---------CCCccccccccc
Q 019204 295 DLCVICLEQEYN------------------AVFFPCGHLCCCLICSSRL---------TNCPLCRRRIDQ 337 (344)
Q Consensus 295 ~~C~iC~~~~~~------------------~~~~pCgH~~~C~~C~~~~---------~~CP~CR~~i~~ 337 (344)
..|.||++.... +.++||||.| |..|+..+ ..||+||..+..
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~F-h~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAF-HLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEE-CHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCCcc-cHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 489999997633 3378999999 99998653 489999988754
No 53
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.21 E-value=6e-07 Score=69.17 Aligned_cols=46 Identities=13% Similarity=0.014 Sum_probs=39.8
Q ss_pred CccccccccccccccceEEecCCCcccccchhhCC----CCCccccccccc
Q 019204 291 RVMPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQ 337 (344)
Q Consensus 291 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~ 337 (344)
.+....|+||++-..+.+.+||||.| |..|+... ..||+||.++..
T Consensus 26 ~p~~~~CpI~~~~m~dPV~~~cGhtf-~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDPVRLPSGTIM-DRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp CSTTTBCTTTCSBCSSEEEETTTEEE-EHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred CcHhhCCcCccCcccCCeECCCCCEE-chHHHHHHHHcCCCCCCCCCCCCh
Confidence 34467999999999999999999999 99998664 589999998763
No 54
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.21 E-value=3.3e-07 Score=72.45 Aligned_cols=43 Identities=35% Similarity=0.616 Sum_probs=38.1
Q ss_pred ccccccccccccceEEecCCCcccccchhhCC-----CCCccccccccc
Q 019204 294 PDLCVICLEQEYNAVFFPCGHLCCCLICSSRL-----TNCPLCRRRIDQ 337 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~CR~~i~~ 337 (344)
...|+||++...+.+.+||||.| |..|+... ..||+||.++..
T Consensus 23 ~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHILADPVETSCKHLF-CRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCcHhcCcEEcCCCCcc-cHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 45899999999999999999999 99998753 589999999864
No 55
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.18 E-value=4.6e-07 Score=66.99 Aligned_cols=42 Identities=33% Similarity=0.689 Sum_probs=31.7
Q ss_pred cccccccccccc--------------eEEe-cCCCcccccchhhCC----CCCccccccccc
Q 019204 295 DLCVICLEQEYN--------------AVFF-PCGHLCCCLICSSRL----TNCPLCRRRIDQ 337 (344)
Q Consensus 295 ~~C~iC~~~~~~--------------~~~~-pCgH~~~C~~C~~~~----~~CP~CR~~i~~ 337 (344)
..|.||++...+ .+.+ +|||.| |..|+... ..||+||+++..
T Consensus 16 ~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~F-H~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 16 DTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSF-HNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp SCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEE-EHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCcccChhhhccCcccccccCCCceEEEeCCCCCcc-ChHHHHHHHHhCCCCCCcCCCcch
Confidence 468888776543 4444 599999 99999764 689999998753
No 56
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.09 E-value=3.9e-07 Score=74.75 Aligned_cols=43 Identities=26% Similarity=0.564 Sum_probs=37.8
Q ss_pred ccccccccccccccceEEecCCCcccccchhhCC-----CCCccccccc
Q 019204 292 VMPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL-----TNCPLCRRRI 335 (344)
Q Consensus 292 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~CR~~i 335 (344)
.....|.||++...+.+.++|||.| |..|+... ..||+||.++
T Consensus 29 ~~~~~C~IC~~~~~~pv~~~CgH~F-C~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPFQAQCGHRY-CSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHGGGSCEECHHHHHTT
T ss_pred CcCcCCCCCChhhcCcEECCCCCcc-CHHHHHHHHhcCCCCCCCCCCcc
Confidence 4456999999999999999999999 99999775 3899999975
No 57
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.08 E-value=8.4e-07 Score=71.39 Aligned_cols=49 Identities=29% Similarity=0.699 Sum_probs=40.7
Q ss_pred cccccccccccccce-------EEecCCCcccccchhhCC----CCCcccccccc--ceEecc
Q 019204 293 MPDLCVICLEQEYNA-------VFFPCGHLCCCLICSSRL----TNCPLCRRRID--QVVRTF 342 (344)
Q Consensus 293 ~~~~C~iC~~~~~~~-------~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~--~~~~i~ 342 (344)
+...|.||++...+. +.++|||.| |..|+... ..||+||.++. .+.++|
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBEE-EHHHHHHHHHHCSBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCChh-hHHHHHHHHHcCCCCCCCCCcCChhcceeee
Confidence 346899999977664 888999999 99999764 69999999986 466776
No 58
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.06 E-value=1.6e-06 Score=78.77 Aligned_cols=45 Identities=13% Similarity=-0.061 Sum_probs=38.9
Q ss_pred CccccccccccccccceEEecCCCcccccchhhCC-----CCCcccccccc
Q 019204 291 RVMPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL-----TNCPLCRRRID 336 (344)
Q Consensus 291 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~CR~~i~ 336 (344)
.+....|+||++-..+++.+||||.| |..|+... ..||+||.++.
T Consensus 205 ~~~~~~c~i~~~~~~dPv~~~~gh~f-~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 205 IPDYLCGKISFELMREPCITPSGITY-DRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp CCSTTBCTTTCSBCSSEEECSSCCEE-ETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred CCcccCCcCcCCHhcCCeECCCCCEE-CHHHHHHHHHHCCCCCcCCCCCCc
Confidence 34456999999999999999999999 99998753 34999999886
No 59
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.95 E-value=8.5e-06 Score=69.19 Aligned_cols=46 Identities=15% Similarity=-0.050 Sum_probs=39.4
Q ss_pred CccccccccccccccceEEecCCCcccccchhhCC-----CCCccccccccc
Q 019204 291 RVMPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL-----TNCPLCRRRIDQ 337 (344)
Q Consensus 291 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~CR~~i~~ 337 (344)
.+....|+||++-..+++.+||||.| |..|+... ..||+||.++..
T Consensus 103 ip~~f~CPI~~elm~DPV~~~~Ghtf-er~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 103 IPDYLCGKISFELMREPCITPSGITY-DRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CcHhhcccCccccCCCCeECCCCCEE-CHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 34567999999999999999999999 99998663 359999998764
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=97.92 E-value=3.1e-06 Score=71.47 Aligned_cols=46 Identities=30% Similarity=0.547 Sum_probs=40.0
Q ss_pred CccccccccccccccceEEecCCCcccccchhhCC-----CCCccccccccc
Q 019204 291 RVMPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL-----TNCPLCRRRIDQ 337 (344)
Q Consensus 291 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~CR~~i~~ 337 (344)
.++...|+||++...+.+.+||||.| |..|+..+ ..||+||.++..
T Consensus 15 ~~~~~~C~IC~~~~~~pv~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 15 LESKYECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCChhhcCcEECCCCCHH-HHHHHHHHHHhCCCCCCCCccCcch
Confidence 34456999999999999999999999 99999775 489999998865
No 61
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.90 E-value=2.8e-06 Score=66.02 Aligned_cols=42 Identities=31% Similarity=0.614 Sum_probs=33.1
Q ss_pred ccccccccccccc------------------eEEecCCCcccccchhhCC----CCCcccccccc
Q 019204 294 PDLCVICLEQEYN------------------AVFFPCGHLCCCLICSSRL----TNCPLCRRRID 336 (344)
Q Consensus 294 ~~~C~iC~~~~~~------------------~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~ 336 (344)
...|.||++...+ ++.+||+|.| +..|+... ..||+||++..
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~F-H~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAF-HFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEE-EHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEE-CHHHHHHHHHcCCcCcCCCCcce
Confidence 3579999875432 4678999999 99999774 68999999853
No 62
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.73 E-value=4.9e-06 Score=65.76 Aligned_cols=42 Identities=31% Similarity=0.614 Sum_probs=0.4
Q ss_pred ccccccccccccc------------------eEEecCCCcccccchhhCC----CCCcccccccc
Q 019204 294 PDLCVICLEQEYN------------------AVFFPCGHLCCCLICSSRL----TNCPLCRRRID 336 (344)
Q Consensus 294 ~~~C~iC~~~~~~------------------~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~ 336 (344)
...|.||++...+ ++.+||+|.| +..|+... ..||+||++..
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~F-H~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAF-HFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp C----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceE-cHHHHHHHHHcCCcCCCCCCeee
Confidence 3589999986543 2345999999 99999874 58999999853
No 63
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.73 E-value=1.2e-05 Score=61.05 Aligned_cols=41 Identities=27% Similarity=0.386 Sum_probs=35.2
Q ss_pred cccccccccccccceEEec-CCCcccccchhhCC----------CCCcc--cccc
Q 019204 293 MPDLCVICLEQEYNAVFFP-CGHLCCCLICSSRL----------TNCPL--CRRR 334 (344)
Q Consensus 293 ~~~~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~~----------~~CP~--CR~~ 334 (344)
....|+||++-..+.+.+| |||.| |..|+... ..||+ |+..
T Consensus 6 ~~~~CPI~~~~~~dPV~~~~cGh~f-~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPVKNKVCGHTY-EEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCSSEEEESSSCCEE-EHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhcCCEEcCCCCCee-cHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 3468999999999999996 99999 99998654 28999 9854
No 64
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.62 E-value=6e-05 Score=67.29 Aligned_cols=44 Identities=16% Similarity=0.320 Sum_probs=37.3
Q ss_pred ccccccccccccccceEEe-cCCCcccccchhhCC------CCCcc--cccccc
Q 019204 292 VMPDLCVICLEQEYNAVFF-PCGHLCCCLICSSRL------TNCPL--CRRRID 336 (344)
Q Consensus 292 ~~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~------~~CP~--CR~~i~ 336 (344)
.....|+||++...+.+.. .|||.| |..|+..+ ..||+ ||+.+.
T Consensus 179 ~~el~CPIcl~~f~DPVts~~CGHsF-cR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 179 KIELTCPITCKPYEAPLISRKCNHVF-DRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp BCCSBCTTTSSBCSSEEEESSSCCEE-EHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred ceeeECcCccCcccCCeeeCCCCCcc-cHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 3456999999999999975 999999 99998764 26999 999765
No 65
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.61 E-value=3.4e-05 Score=58.19 Aligned_cols=45 Identities=22% Similarity=0.552 Sum_probs=34.6
Q ss_pred ccccccccccc-eEEecCCCcccccchhhC-----CCCCccccccccceEec
Q 019204 296 LCVICLEQEYN-AVFFPCGHLCCCLICSSR-----LTNCPLCRRRIDQVVRT 341 (344)
Q Consensus 296 ~C~iC~~~~~~-~~~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~~~~i 341 (344)
-|..|--.... ..++||.|+| |.+|+.. .+.||+|+.+|.++...
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvF-CydCa~~~~~~~~k~Cp~C~~~V~rVe~~ 53 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVF-CYDCAILHEKKGDKMCPGCSDPVQRIEQC 53 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEE-EHHHHHHHHHTTCCBCTTTCCBCSEEEEE
T ss_pred ecCccCCCeEEEeeeccccccH-HHHHHHHHHhccCCCCcCcCCeeeeeEEe
Confidence 46667555443 4567999999 9999954 36899999999987764
No 66
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.49 E-value=4.4e-05 Score=56.06 Aligned_cols=43 Identities=26% Similarity=0.634 Sum_probs=34.4
Q ss_pred ccccccccccc--cceEEecCC-----CcccccchhhCC------CCCccccccccc
Q 019204 294 PDLCVICLEQE--YNAVFFPCG-----HLCCCLICSSRL------TNCPLCRRRIDQ 337 (344)
Q Consensus 294 ~~~C~iC~~~~--~~~~~~pCg-----H~~~C~~C~~~~------~~CP~CR~~i~~ 337 (344)
...|.||++.. .+.+++||+ |.| ...|+.+. ..||+||..+..
T Consensus 15 ~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~f-H~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 15 QDICRICHCEGDDESPLITPCHCTGSLHFV-HQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp SCCCSSSCCCCCSSSCEECSSSCCSSSCCE-ETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCeEcCccccCCCeeEeccccCCcCCee-CHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 45899999753 345678996 999 99999875 389999998754
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.34 E-value=2.7e-05 Score=58.92 Aligned_cols=40 Identities=23% Similarity=0.678 Sum_probs=30.4
Q ss_pred ccccccccccccce---EEecCCCcccccchhhCC------------CCCcc--cccc
Q 019204 294 PDLCVICLEQEYNA---VFFPCGHLCCCLICSSRL------------TNCPL--CRRR 334 (344)
Q Consensus 294 ~~~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~------------~~CP~--CR~~ 334 (344)
...|.||++..... .+.+|||.| |..|.... ..||. |+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~F-C~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIF-CTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEE-EHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccceEcCCCCCcc-cHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 45899999875543 234899999 99997542 27999 9987
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.00 E-value=0.00027 Score=48.97 Aligned_cols=48 Identities=15% Similarity=0.169 Sum_probs=40.6
Q ss_pred cccccccccccceEEe-cCCCcccccchhhCC----CCCcccccccc--ceEeccc
Q 019204 295 DLCVICLEQEYNAVFF-PCGHLCCCLICSSRL----TNCPLCRRRID--QVVRTFR 343 (344)
Q Consensus 295 ~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~----~~CP~CR~~i~--~~~~i~~ 343 (344)
..|+||++-..+.++. +|||.+ |..|+.+. ..||++++++. .++++..
T Consensus 4 ~~CpIs~~~m~dPV~~~~sG~~y-er~~I~~~l~~~~~cP~t~~~L~~~~Lip~~~ 58 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSPKSRTIF-EKSLLEQYVKDTGNDPITNEPLSIEEIVEIVP 58 (61)
T ss_dssp CCCTTTCSCCSSEEEETTTTEEE-EHHHHHHHHHHHSBCTTTCCBCCGGGCEECCC
T ss_pred EEecCCCCCCCCCEEeCCCCcEE-cHHHHHHHHHhCCCCcCCcCCCChhhcEECcc
Confidence 5799999999999999 999999 99999875 57999999884 4555543
No 69
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=96.01 E-value=0.0016 Score=44.83 Aligned_cols=43 Identities=30% Similarity=0.532 Sum_probs=32.3
Q ss_pred ccccccccccccceEEecCCCc----ccccchhhCC------CCCcccccccc
Q 019204 294 PDLCVICLEQEYNAVFFPCGHL----CCCLICSSRL------TNCPLCRRRID 336 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pCgH~----~~C~~C~~~~------~~CP~CR~~i~ 336 (344)
...|.||++...+..+.||.+. ++-..|+.+. ..||+|+..+.
T Consensus 6 ~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 6 VPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4589999987766667897642 3378898764 58999998764
No 70
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=95.08 E-value=0.0043 Score=57.41 Aligned_cols=44 Identities=20% Similarity=0.580 Sum_probs=32.9
Q ss_pred cccccccccccccc--------eEEecCCCcccccchhhCC---------------CCCccccccccc
Q 019204 293 MPDLCVICLEQEYN--------AVFFPCGHLCCCLICSSRL---------------TNCPLCRRRIDQ 337 (344)
Q Consensus 293 ~~~~C~iC~~~~~~--------~~~~pCgH~~~C~~C~~~~---------------~~CP~CR~~i~~ 337 (344)
....|.|||+...+ +...+|||.| ...|.... ..||.||.+|..
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~F-H~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKC-HAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCB-CSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCcc-chHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 35689999985443 2234799999 89998652 369999999864
No 71
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.41 E-value=0.042 Score=39.31 Aligned_cols=44 Identities=23% Similarity=0.500 Sum_probs=32.8
Q ss_pred ccccccccccccceE-EecCCCcccccchhhCC------CCCccccccccce
Q 019204 294 PDLCVICLEQEYNAV-FFPCGHLCCCLICSSRL------TNCPLCRRRIDQV 338 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~-~~pCgH~~~C~~C~~~~------~~CP~CR~~i~~~ 338 (344)
...|.||++...... ...|+|.| -..|+.+. ..||+||.....-
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~f-H~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIRM-HLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCEE-CHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCcCcchhhHcccCCccCCCCchh-hHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 458999998654322 23899999 89999742 6899999987643
No 72
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=86.43 E-value=0.18 Score=37.36 Aligned_cols=46 Identities=28% Similarity=0.753 Sum_probs=35.2
Q ss_pred ccccccccccccceEEecCCCcccccchhhCC----CCCccccccccceEec
Q 019204 294 PDLCVICLEQEYNAVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQVVRT 341 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~~~~i 341 (344)
...|..|.-..++-+ .|.--.+|..|...| ..||+|..++...+++
T Consensus 28 ~~nCKsCWf~~k~LV--~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 28 PQFCKSCWFENKGLV--ECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRP 77 (99)
T ss_dssp CCCCCSSCSCCSSEE--ECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCT
T ss_pred cccChhhccccCCee--eecchhhHHHHHHHHHhhccCCcccCCcCCcceec
Confidence 458999988887544 476445599999876 6899999988766553
No 73
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=81.60 E-value=2.6 Score=34.29 Aligned_cols=41 Identities=22% Similarity=0.500 Sum_probs=29.3
Q ss_pred cccccccccccc-----cceEEecCCCcccccchhhCCC-----CCcccccc
Q 019204 293 MPDLCVICLEQE-----YNAVFFPCGHLCCCLICSSRLT-----NCPLCRRR 334 (344)
Q Consensus 293 ~~~~C~iC~~~~-----~~~~~~pCgH~~~C~~C~~~~~-----~CP~CR~~ 334 (344)
....|.+|.... .-.....|.|.+ |..|....+ .|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~V-C~~C~~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFV-CKSCSHAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEE-CGGGEECCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchh-hcccccccCCCCcEeeHHHHHH
Confidence 356999999863 345556788888 899985542 58888754
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=80.75 E-value=0.42 Score=35.79 Aligned_cols=29 Identities=28% Similarity=0.520 Sum_probs=23.2
Q ss_pred ccccccccc-ccceEE--ecCCCcccccchhhC
Q 019204 295 DLCVICLEQ-EYNAVF--FPCGHLCCCLICSSR 324 (344)
Q Consensus 295 ~~C~iC~~~-~~~~~~--~pCgH~~~C~~C~~~ 324 (344)
..|.+|.+. ...++. ++|+|.+ |..|...
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~~-C~~Cl~~ 35 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVSY-CDECLKA 35 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEEE-CHHHHHH
T ss_pred CCCcCCCCCCCCCceEECCcCChHH-hHHHCHH
Confidence 479999974 455555 8999999 9999875
No 75
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=78.92 E-value=0.52 Score=33.73 Aligned_cols=30 Identities=37% Similarity=0.825 Sum_probs=26.0
Q ss_pred ccccccccccccceEEecC----CCcccccchhhC
Q 019204 294 PDLCVICLEQEYNAVFFPC----GHLCCCLICSSR 324 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pC----gH~~~C~~C~~~ 324 (344)
...|.+|.++-.+.-|+.| .|.| |..|...
T Consensus 15 ~l~CtlC~erLEdtHFVQCPsv~~HkF-CFpCsr~ 48 (93)
T 2cs3_A 15 PLCCTICHERLEDTHFVQCPSVPSHKF-CFPCSRE 48 (93)
T ss_dssp SCCCSSSCSCCSSTTSEECSSCSSCEE-CHHHHHH
T ss_pred eeEeecchhhhccCceeeCCCccCCee-eccccHH
Confidence 4589999999999999888 4888 9999865
No 76
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=67.53 E-value=1.9 Score=37.83 Aligned_cols=43 Identities=23% Similarity=0.511 Sum_probs=31.1
Q ss_pred ccccccccccccceEE-ecCCCcccccchhhCC------CCCccccccccc
Q 019204 294 PDLCVICLEQEYNAVF-FPCGHLCCCLICSSRL------TNCPLCRRRIDQ 337 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~------~~CP~CR~~i~~ 337 (344)
-..|.+|.+-...... -.|+|.+ -..|.... ..||.|+.....
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~-H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRM-HLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEE-CHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCCcccCccChHH-HHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 3589999985544332 2388888 88998653 489999987654
No 77
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=64.97 E-value=16 Score=28.79 Aligned_cols=40 Identities=25% Similarity=0.548 Sum_probs=27.5
Q ss_pred cccccccccccc-----ceEEecCCCcccccchhhCC--------CCCcccccc
Q 019204 294 PDLCVICLEQEY-----NAVFFPCGHLCCCLICSSRL--------TNCPLCRRR 334 (344)
Q Consensus 294 ~~~C~iC~~~~~-----~~~~~pCgH~~~C~~C~~~~--------~~CP~CR~~ 334 (344)
...|.+|..... .....-|.|.+ |..|.... =.|-+|+..
T Consensus 55 ~~~C~~C~~~~g~l~~~g~~C~~C~~~V-C~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 55 VNRCILCGEQLGMLGSASVVCEDCKKNV-CTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp SSBCSSSCCBCSTTSCCEEECTTTCCEE-ETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CccccccCCCcccccCCCCCCCCCCccc-ccccCCccCCCCCccceechhhHHH
Confidence 468999988662 23455788887 88887643 157777754
No 78
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=45.39 E-value=6.2 Score=29.26 Aligned_cols=42 Identities=19% Similarity=0.407 Sum_probs=28.5
Q ss_pred cccccccccccccceEEecCCCcccccchhhCC---CCCccccccccceE
Q 019204 293 MPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL---TNCPLCRRRIDQVV 339 (344)
Q Consensus 293 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~---~~CP~CR~~i~~~~ 339 (344)
+...|+.|...-.. . |..+.|..|.... ..||-|.++++...
T Consensus 31 M~~~CP~Cq~eL~~----~-g~~~hC~~C~~~f~~~a~CPdC~q~LevLk 75 (101)
T 2jne_A 31 MELHCPQCQHVLDQ----D-NGHARCRSCGEFIEMKALCPDCHQPLQVLK 75 (101)
T ss_dssp CCCBCSSSCSBEEE----E-TTEEEETTTCCEEEEEEECTTTCSBCEEEE
T ss_pred ccccCccCCCccee----c-CCEEECccccchhhccccCcchhhHHHHHH
Confidence 44699999865332 1 3334488887765 57999999887643
No 79
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=41.91 E-value=1e+02 Score=23.60 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=16.6
Q ss_pred ccccCCceeEEeeeEEecCCCce
Q 019204 171 RLLPTGTSLTVVGEAVKDDIGTV 193 (344)
Q Consensus 171 ~~L~~G~~l~vvGe~~~d~~g~~ 193 (344)
..+++|+-+.|.|.+..- +|..
T Consensus 78 ~~~~~g~yVrV~G~l~~f-~g~~ 99 (132)
T 3kdf_D 78 TVVPPETYVKVAGHLRSF-QNKK 99 (132)
T ss_dssp CCCCTTCEEEEEEEEEEE-TTEE
T ss_pred ccccCCCEEEEEEEEEeE-CCEE
Confidence 458899999999997654 3443
No 80
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=39.87 E-value=97 Score=21.85 Aligned_cols=23 Identities=13% Similarity=0.127 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019204 239 IAKRVIRCILQRKRRWELRRRVL 261 (344)
Q Consensus 239 l~~~~~r~~~~~r~~~~~~~~~~ 261 (344)
+.+++...+.++|+-.+.+++.+
T Consensus 30 liwk~~~~i~DrrE~~kFEkE~~ 52 (79)
T 2knc_B 30 LIWKLLITIHDRKEFAKFEEERA 52 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777777766665443
No 81
>2hw2_A Rifampin ADP-ribosyl transferase; protein-antibiotic complex, ADP-ribosylation; HET: RFP; 1.45A {Mycobacterium smegmatis}
Probab=35.32 E-value=24 Score=27.81 Aligned_cols=48 Identities=23% Similarity=0.337 Sum_probs=31.1
Q ss_pred CCceEEEEecCCCCccceeeeeeeeeecCcccccccccccccceeeeeEEEEeccccCCceeEEeeeEEe
Q 019204 118 DGTGCVFVVGARGATGFALTVGSEVFEESGRSLVHGTLDYLQGLKMLGVKRIGRLLPTGTSLTVVGEAVK 187 (344)
Q Consensus 118 D~tg~v~V~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~r~~E~~L~~G~~l~vvGe~~~ 187 (344)
|+.++|.|+.|.+..--|-++...+|+ |.-++.||..| +|-|+||+..
T Consensus 67 eg~~RIYiVEPtG~fEdDPNvTdKkFP---------------GNPTrSYRS~~-------PLrIvgEv~~ 114 (143)
T 2hw2_A 67 EGRGRIFIVEPEGAIEDDPNVTDKKLP---------------GNPTRSYRTRE-------PVWIVGELTD 114 (143)
T ss_dssp SSCCEEEEEEESSCCEECGGGSSSSSS---------------SCTTCEEEESS-------CEEEEEEECC
T ss_pred CCCCeEEEEccCCCcccCCCccCCCCC---------------CCCccccccCC-------CcEEEEEecc
Confidence 667899999898885333333333333 33356788775 6889999643
No 82
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=34.53 E-value=11 Score=27.38 Aligned_cols=43 Identities=33% Similarity=0.744 Sum_probs=28.2
Q ss_pred ccccccccccccc----eEEecC---CCcccccchhhCC-----CCCccccccccc
Q 019204 294 PDLCVICLEQEYN----AVFFPC---GHLCCCLICSSRL-----TNCPLCRRRIDQ 337 (344)
Q Consensus 294 ~~~C~iC~~~~~~----~~~~pC---gH~~~C~~C~~~~-----~~CP~CR~~i~~ 337 (344)
...|.||-+..-. -+|.-| +-- +|..|+.-. +.||.|+.+..+
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FP-vCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFP-ACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCC-CCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCCh-hhHHHHHHHHhccCccccccCCcccc
Confidence 4699999886322 144444 333 388887532 789999987653
No 83
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=33.48 E-value=18 Score=29.73 Aligned_cols=31 Identities=19% Similarity=0.346 Sum_probs=19.6
Q ss_pred eEEecCCCcccccchhhCCCCCccccccccceEec
Q 019204 307 AVFFPCGHLCCCLICSSRLTNCPLCRRRIDQVVRT 341 (344)
Q Consensus 307 ~~~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~~~i 341 (344)
.+...|||+.. . ..-..||+|..+-..+.++
T Consensus 139 ~~C~~CG~i~~--~--~~p~~CP~Cg~~~~~F~~~ 169 (170)
T 3pwf_A 139 YICPICGYTAV--D--EAPEYCPVCGAPKEKFVVF 169 (170)
T ss_dssp EECTTTCCEEE--S--CCCSBCTTTCCBGGGCEEE
T ss_pred eEeCCCCCeeC--C--CCCCCCCCCCCCHHHceec
Confidence 33445777763 1 1224899999887776654
No 84
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=32.84 E-value=19 Score=30.05 Aligned_cols=30 Identities=17% Similarity=0.255 Sum_probs=18.8
Q ss_pred eEEecCCCcccccchhhCC-CCCccccccccceEe
Q 019204 307 AVFFPCGHLCCCLICSSRL-TNCPLCRRRIDQVVR 340 (344)
Q Consensus 307 ~~~~pCgH~~~C~~C~~~~-~~CP~CR~~i~~~~~ 340 (344)
.+...|||+.. .... ..||+|..+-..+.+
T Consensus 156 ~~C~~CG~~~~----g~~~p~~CP~C~~~k~~f~~ 186 (191)
T 1lko_A 156 WRCRNCGYVHE----GTGAPELCPACAHPKAHFEL 186 (191)
T ss_dssp EEETTTCCEEE----EEECCSBCTTTCCBGGGEEE
T ss_pred EEECCCCCEee----CCCCCCCCCCCcCCHHHHHh
Confidence 33345677763 1123 389999998776654
No 85
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=30.39 E-value=34 Score=22.85 Aligned_cols=35 Identities=26% Similarity=0.720 Sum_probs=25.8
Q ss_pred ccccccccccceE-E--ecCCCcccccchhhC----CCCCccc
Q 019204 296 LCVICLEQEYNAV-F--FPCGHLCCCLICSSR----LTNCPLC 331 (344)
Q Consensus 296 ~C~iC~~~~~~~~-~--~pCgH~~~C~~C~~~----~~~CP~C 331 (344)
.|-.|.....+.. + -.|++.| |.+|..- +..||.|
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~F-C~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVF-CVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCB-CHHHHHTTTTTSCSSSTT
T ss_pred cccccCcccCCCccEECCccCcCc-ccchhHHHHhhccCCcCC
Confidence 5888888764433 2 3688888 9999754 4799998
No 86
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=30.14 E-value=29 Score=20.96 Aligned_cols=12 Identities=25% Similarity=0.407 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHhc
Q 019204 10 CLSGAALYLLGRS 22 (344)
Q Consensus 10 ~~~~~~~~~~~~~ 22 (344)
+++++++| ++|+
T Consensus 26 li~~l~~~-~~rr 37 (38)
T 2k1k_A 26 LLLGILVF-RSRR 37 (38)
T ss_dssp HHHHHHHH-HHCC
T ss_pred HHHHHHHH-Heec
Confidence 34444444 5554
No 87
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=29.97 E-value=18 Score=24.71 Aligned_cols=30 Identities=30% Similarity=0.576 Sum_probs=23.1
Q ss_pred ccccccccccccceEEecC-CCcccccchhhCC
Q 019204 294 PDLCVICLEQEYNAVFFPC-GHLCCCLICSSRL 325 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pC-gH~~~C~~C~~~~ 325 (344)
..-|.||.+.. ....+.| |-++ |..|...+
T Consensus 8 ~pWC~ICneDA-tlrC~gCdgDLY-C~rC~rE~ 38 (67)
T 2d8v_A 8 LPWCCICNEDA-TLRCAGCDGDLY-CARCFREG 38 (67)
T ss_dssp CSSCTTTCSCC-CEEETTTTSEEE-CSSHHHHH
T ss_pred CCeeEEeCCCC-eEEecCCCCcee-hHHHHHHH
Confidence 45899999984 4666788 7777 99998654
No 88
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=28.17 E-value=38 Score=22.49 Aligned_cols=11 Identities=18% Similarity=0.748 Sum_probs=8.1
Q ss_pred ccccccccccc
Q 019204 293 MPDLCVICLEQ 303 (344)
Q Consensus 293 ~~~~C~iC~~~ 303 (344)
+...|.+|.+.
T Consensus 8 ~~~~C~vC~~~ 18 (61)
T 1mm2_A 8 HMEFCRVCKDG 18 (61)
T ss_dssp SCSSCTTTCCC
T ss_pred CCCcCCCCCCC
Confidence 34589999864
No 89
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=27.85 E-value=29 Score=26.21 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=22.1
Q ss_pred ccccccccccccceEEecCCCcccccc
Q 019204 294 PDLCVICLEQEYNAVFFPCGHLCCCLI 320 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pCgH~~~C~~ 320 (344)
...|..|.......+-+-|||+. |..
T Consensus 24 ~~~C~~C~~~~~~W~CL~CG~vg-Cgr 49 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCLSCYQVY-CGR 49 (109)
T ss_dssp TCCCTTTCCCSSEEEETTTCCEE-ECT
T ss_pred CCcCccccCCCCeeeeeecCccc-cCC
Confidence 45799999988888999999999 753
No 90
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=26.83 E-value=35 Score=26.66 Aligned_cols=27 Identities=19% Similarity=0.154 Sum_probs=22.4
Q ss_pred ccccccccccccceEEecCCCcccccc
Q 019204 294 PDLCVICLEQEYNAVFFPCGHLCCCLI 320 (344)
Q Consensus 294 ~~~C~iC~~~~~~~~~~pCgH~~~C~~ 320 (344)
...|..|.......+.+-|||+.||+.
T Consensus 34 ~~~C~~C~~~~~LwlCL~CG~vgCgr~ 60 (129)
T 2g45_A 34 GWKCSKCDMRENLWLNLTDGSILCGRR 60 (129)
T ss_dssp BCCCSSSSCCSSEEEETTTCCEEECCB
T ss_pred CCcCccccCcCceEEeccCCccccCcc
Confidence 357999999888888999999996554
No 91
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=26.11 E-value=1.3e+02 Score=22.58 Aligned_cols=17 Identities=24% Similarity=0.388 Sum_probs=13.4
Q ss_pred cccCCceeEEeeeEEec
Q 019204 172 LLPTGTSLTVVGEAVKD 188 (344)
Q Consensus 172 ~L~~G~~l~vvGe~~~d 188 (344)
-+.+++.|.+.||+..|
T Consensus 77 ~v~p~~~Vri~GevDkd 93 (109)
T 1nnx_A 77 TVTPKDTVEIQGEVDKD 93 (109)
T ss_dssp CCCTTSCEEEEEEEEEE
T ss_pred ccCCCCEEEEEEEECCC
Confidence 46788888999998765
No 92
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=25.96 E-value=19 Score=21.24 Aligned_cols=9 Identities=33% Similarity=1.209 Sum_probs=4.5
Q ss_pred Ccccccccc
Q 019204 328 CPLCRRRID 336 (344)
Q Consensus 328 CP~CR~~i~ 336 (344)
||+|.+...
T Consensus 8 CP~C~~~l~ 16 (34)
T 3mjh_B 8 CPQCMKSLG 16 (34)
T ss_dssp CTTTCCEES
T ss_pred CcHHHHHcC
Confidence 555554443
No 93
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=25.51 E-value=40 Score=24.49 Aligned_cols=14 Identities=14% Similarity=0.506 Sum_probs=9.9
Q ss_pred Cccccccccccccc
Q 019204 291 RVMPDLCVICLEQE 304 (344)
Q Consensus 291 ~~~~~~C~iC~~~~ 304 (344)
..+...|.+|.+..
T Consensus 22 d~n~~~C~vC~~~g 35 (88)
T 1fp0_A 22 DDSATICRVCQKPG 35 (88)
T ss_dssp SSSSSCCSSSCSSS
T ss_pred CCCCCcCcCcCCCC
Confidence 33456899999764
No 94
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=25.37 E-value=24 Score=31.93 Aligned_cols=42 Identities=19% Similarity=0.508 Sum_probs=31.1
Q ss_pred cccccccccccccceEEec----CCCc-ccccchhhCC----CCCcccccc
Q 019204 293 MPDLCVICLEQEYNAVFFP----CGHL-CCCLICSSRL----TNCPLCRRR 334 (344)
Q Consensus 293 ~~~~C~iC~~~~~~~~~~p----CgH~-~~C~~C~~~~----~~CP~CR~~ 334 (344)
....|++|-..+.-.++.. =|+. ..|.-|.... .+||.|...
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 3569999999998777652 4532 2388998765 589999976
No 95
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=24.02 E-value=41 Score=22.87 Aligned_cols=19 Identities=21% Similarity=0.523 Sum_probs=11.9
Q ss_pred ccchhhCC--CCCcccccccc
Q 019204 318 CLICSSRL--TNCPLCRRRID 336 (344)
Q Consensus 318 C~~C~~~~--~~CP~CR~~i~ 336 (344)
|..|..++ +.|+.|.++|.
T Consensus 6 C~~cy~~~~~~~C~~C~~~I~ 26 (77)
T 2egq_A 6 SGDCYKNFVAKKCAGCKNPIT 26 (77)
T ss_dssp CTTCCCSCCCCCCSSSCCCCC
T ss_pred chhHhchhhCccCcccCCccc
Confidence 66666554 56666666666
No 96
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=22.70 E-value=33 Score=31.85 Aligned_cols=41 Identities=24% Similarity=0.417 Sum_probs=28.7
Q ss_pred ccccccccccccce-EEecCCCcccccchhhC--------CCCCccccccc
Q 019204 294 PDLCVICLEQEYNA-VFFPCGHLCCCLICSSR--------LTNCPLCRRRI 335 (344)
Q Consensus 294 ~~~C~iC~~~~~~~-~~~pCgH~~~C~~C~~~--------~~~CP~CR~~i 335 (344)
...|++-+...... -...|.|+. |++-..= .-.||+|.+.+
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQ-CFDl~sfL~~~~~~~~W~CPIC~k~~ 298 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQ-CFDALWFLHSQLQIPTWQCPVCQIDI 298 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSC-CEEHHHHHHHHHHSCCCBCTTTCCBC
T ss_pred eecCCCccccccccCcCCcCCCcc-eECHHHHHHHhhcCCceeCCCCCccc
Confidence 45899887776653 356799997 6665322 14899999876
No 97
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=22.54 E-value=52 Score=19.61 Aligned_cols=15 Identities=20% Similarity=0.364 Sum_probs=10.0
Q ss_pred ccchhhHHHHHHHHH
Q 019204 2 ISWGGISCCLSGAAL 16 (344)
Q Consensus 2 ~~~g~~~~~~~~~~~ 16 (344)
+++|.+..-++|++.
T Consensus 9 IVlGlipvtlaGLfv 23 (37)
T 1q90_G 9 IVLGLVPVTIAGLFV 23 (37)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHH
Confidence 356667667777775
No 98
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=22.19 E-value=52 Score=19.53 Aligned_cols=21 Identities=5% Similarity=0.082 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHhcchhhhHhh
Q 019204 10 CLSGAALYLLGRSSGRDAELL 30 (344)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~l 30 (344)
++.+++|++..|..+++.+.-
T Consensus 11 ~~~~ifYFl~iRPQ~Kr~K~~ 31 (37)
T 2rdd_B 11 VFGLIFYFMILRPQQKRTKEH 31 (37)
T ss_dssp HHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHH
Confidence 344556666666555444443
No 99
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.15 E-value=34 Score=23.75 Aligned_cols=19 Identities=21% Similarity=0.502 Sum_probs=9.9
Q ss_pred ccchhhCC--CCCcccccccc
Q 019204 318 CLICSSRL--TNCPLCRRRID 336 (344)
Q Consensus 318 C~~C~~~~--~~CP~CR~~i~ 336 (344)
|..|..++ ++|..|.++|.
T Consensus 6 C~~~y~~~~~~~C~~C~~~I~ 26 (82)
T 2ehe_A 6 SGPCYDNTFANTCAECQQLIG 26 (82)
T ss_dssp CCCCCCCCCSCBCTTTCCBCC
T ss_pred chhHhCcccCCcCccCCCccc
Confidence 55555443 45555555554
No 100
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=22.13 E-value=34 Score=25.70 Aligned_cols=20 Identities=25% Similarity=0.831 Sum_probs=13.7
Q ss_pred ecCCCcccccchhhCC---CCCcccccc
Q 019204 310 FPCGHLCCCLICSSRL---TNCPLCRRR 334 (344)
Q Consensus 310 ~pCgH~~~C~~C~~~~---~~CP~CR~~ 334 (344)
..||+.| + ..+ .+||.|+..
T Consensus 71 ~~CG~~F-~----~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 71 RKCGFVF-K----AEINIPSRCPKCKSE 93 (105)
T ss_dssp TTTCCBC-C----CCSSCCSSCSSSCCC
T ss_pred hhCcCee-c----ccCCCCCCCcCCCCC
Confidence 4688887 2 122 589999964
No 101
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.98 E-value=35 Score=23.46 Aligned_cols=18 Identities=17% Similarity=0.514 Sum_probs=7.7
Q ss_pred ccchhhCC--CCCccccccc
Q 019204 318 CLICSSRL--TNCPLCRRRI 335 (344)
Q Consensus 318 C~~C~~~~--~~CP~CR~~i 335 (344)
|..|..++ +.|+.|..+|
T Consensus 6 C~~cy~~~~~~~C~~C~~~I 25 (80)
T 2cuq_A 6 SGPCYENKFAPRCARCSKTL 25 (80)
T ss_dssp CCCCCCCCSSCCCTTTCCCC
T ss_pred cHHHHccccCCcCCCCCCEe
Confidence 44444332 3444444444
No 102
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=21.55 E-value=79 Score=26.94 Aligned_cols=43 Identities=26% Similarity=0.549 Sum_probs=28.9
Q ss_pred cccccccccccc----cceEEecCCCcccccchhhCC------------CCCcccccccc
Q 019204 293 MPDLCVICLEQE----YNAVFFPCGHLCCCLICSSRL------------TNCPLCRRRID 336 (344)
Q Consensus 293 ~~~~C~iC~~~~----~~~~~~pCgH~~~C~~C~~~~------------~~CP~CR~~i~ 336 (344)
....|..|.... +.-..-.||+++ |..|.... ..|-.|-..+.
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~-C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l~ 221 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIF-CGKCSSKYSTIPKFGIEKEVRVCEPCYEQLN 221 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEE-CTTTCCEEEEEGGGTEEEEEEECHHHHHHHC
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEe-ChhhcCCcccCCCCCCCCCCEeCHHHHHHhh
Confidence 346899998643 334445899999 99998642 35666665544
No 103
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=20.49 E-value=28 Score=18.98 Aligned_cols=9 Identities=33% Similarity=1.364 Sum_probs=6.1
Q ss_pred CCccccccc
Q 019204 327 NCPLCRRRI 335 (344)
Q Consensus 327 ~CP~CR~~i 335 (344)
.||+|.+..
T Consensus 8 qcpvcqq~m 16 (29)
T 3vhs_A 8 QCPVCQQMM 16 (29)
T ss_dssp ECTTTCCEE
T ss_pred eChHHHHhC
Confidence 588887643
No 104
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=20.26 E-value=46 Score=20.98 Aligned_cols=14 Identities=36% Similarity=0.736 Sum_probs=11.0
Q ss_pred CCccccccccceEe
Q 019204 327 NCPLCRRRIDQVVR 340 (344)
Q Consensus 327 ~CP~CR~~i~~~~~ 340 (344)
.||+|...-..+.+
T Consensus 32 ~CP~Cg~~k~~F~~ 45 (46)
T 6rxn_A 32 CCPVCGVSKDQFSP 45 (46)
T ss_dssp BCTTTCCBGGGEEE
T ss_pred cCcCCCCcHHHcEe
Confidence 79999988776654
Done!