Query 019205
Match_columns 344
No_of_seqs 117 out of 151
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 07:34:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019205.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019205hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03676 UPF0183: Uncharacteri 100.0 6E-118 1E-122 884.4 34.9 331 2-344 37-394 (394)
2 KOG2819 Uncharacterized conser 100.0 6E-110 1E-114 795.6 22.0 329 2-343 49-404 (413)
3 PF04355 SmpA_OmlA: SmpA / Oml 57.0 5.2 0.00011 30.3 0.9 21 174-194 11-31 (71)
4 PRK11251 DNA-binding transcrip 55.3 22 0.00047 30.2 4.4 21 174-194 35-55 (109)
5 COG4454 Uncharacterized copper 51.0 10 0.00022 34.2 1.9 20 240-259 133-152 (158)
6 PF14105 DUF4278: Domain of un 47.5 33 0.00072 25.2 3.9 14 80-93 24-37 (57)
7 PF11399 DUF3192: Protein of u 39.0 24 0.00052 29.7 2.2 27 174-200 30-56 (102)
8 PF15530 Toxin_50: Putative to 35.2 41 0.00089 30.3 3.2 35 62-96 90-137 (168)
9 PF08006 DUF1700: Protein of u 35.2 16 0.00035 32.7 0.7 30 178-207 40-69 (181)
10 PF14504 CAP_assoc_N: CAP-asso 33.7 27 0.00058 30.6 1.8 20 177-196 1-20 (141)
11 PF02728 Cu_amine_oxidN3: Copp 29.8 65 0.0014 26.2 3.4 29 223-251 68-100 (101)
12 PF00609 DAGK_acc: Diacylglyce 29.6 20 0.00043 31.6 0.3 18 221-238 2-19 (161)
13 KOG2667 COPII vesicle protein 28.0 65 0.0014 33.0 3.7 21 55-75 235-257 (379)
14 PRK11548 outer membrane biogen 24.2 48 0.001 27.7 1.7 20 174-193 45-64 (113)
15 PF09697 Porph_ging: Protein o 23.8 26 0.00056 27.4 -0.0 15 315-329 56-70 (70)
16 PF14504 CAP_assoc_N: CAP-asso 22.0 79 0.0017 27.6 2.7 36 172-207 59-95 (141)
17 PF10049 DUF2283: Protein of u 21.8 1.5E+02 0.0032 21.2 3.6 23 15-38 28-50 (50)
18 PF01846 FF: FF domain; Inter 20.2 67 0.0015 22.5 1.5 19 284-302 15-33 (51)
No 1
>PF03676 UPF0183: Uncharacterised protein family (UPF0183); InterPro: IPR005373 Members of this family are proteins of unknown function.
Probab=100.00 E-value=6.3e-118 Score=884.38 Aligned_cols=331 Identities=49% Similarity=0.892 Sum_probs=302.4
Q ss_pred CCCCccceEEEcCCCCeEEEecCCCCeEEEEEEeeCCCceEEEcceeccCCCCcceeeeeecccCCCCCCcccCCCceEE
Q 019205 2 QEPLKLDIIISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYM 81 (344)
Q Consensus 2 ~~Pl~~~ivi~lp~~GirL~Fd~~~QRL~lIEv~d~~~~~L~Y~~~~~~~p~~~~tf~~Iy~~FGPTyPG~y~~~~~~Y~ 81 (344)
++|++.||||+||++||||+|||++||||||||+||++++|+|++++|++|++.|||++||++|||||||+||+++++|+
T Consensus 37 ~~P~~~~ivi~l~~~GirL~Fd~~~QrL~lIEv~d~~~i~L~Y~~~~~~~p~~~pTf~~Iy~~FGPTyPG~yd~~~~~Yv 116 (394)
T PF03676_consen 37 QDPLSSDIVINLPENGIRLRFDGPSQRLRLIEVYDFSKIKLRYKGSVFSSPEIGPTFRHIYRLFGPTYPGEYDKSRGTYV 116 (394)
T ss_pred CCCCcCCEEEEcCCCCeEEEECCCCcEEEEEEEecCccceEEeCcccccCcccCcchheeheccCCCCCCccCCCCCEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecceEEEEeCCccccccccccCCCccccCCCCCCcceeEEEEEeCCCCcccccCCccccccCCCCCC----CCeeEEE
Q 019205 82 LFYPGLSFAFPIPAQYADCCQDREAELPLEFPDGTTPVTCRVSIYDGSADKKVGVGSLFDKAIAPSLPV----GSLYIEE 157 (344)
Q Consensus 82 LsYpGvaF~Fpi~~~~~~~~~~~~~~l~l~~~~~~~~~~~~m~I~~~~~~~~~~~G~s~~e~~~p~l~~----g~~~~e~ 157 (344)
||||||||+||+++++++.+.++.+ +|+++++++|+|+||+|| +|++|+|+++|++|. |++|+++
T Consensus 117 LsYpGlaF~Fpi~~~~~~~~~~~~~--sl~~~~~ssp~~tsmaIf---------~G~s~~ear~p~lp~~~~~~~~~~~~ 185 (394)
T PF03676_consen 117 LSYPGLAFSFPIPSKFQSSYSDGLD--SLEFPSGSSPVATSMAIF---------SGSSWAEARAPPLPLSCYCGNLYLES 185 (394)
T ss_pred EEECCEEEEeeCchhhcccccCCcc--eeecCCCCCcceeEEEEE---------cCCchhcccCCCccccccCCCcceee
Confidence 9999999999999988888888753 889999999999999999 999999999998864 8899999
Q ss_pred EEEEcCC------cEEEEec--------------eeEEEcCCCHHHHHHhcCCCCccccccCCceeeecCCCCCCCCCcC
Q 019205 158 VHAKLGE------ELHFTVG--------------SQHIPFGASPQDVWTELGRPCGIHQKQVDQMVIHSASDPRPRSTLC 217 (344)
Q Consensus 158 v~v~~~~------~l~f~~~--------------~~~I~fG~T~QDVl~eLG~P~~if~K~ddrM~IH~~~~~~~~~~~~ 217 (344)
|+|...+ .|.|... +++|+||+|||||++|||||++||||+||||+||++++++...+..
T Consensus 186 v~v~~~~~~~~~~~l~l~~~~g~~~~~~~~~~~~~~~I~fGdT~qdv~~~lG~P~~~~~k~~d~m~ih~~~~~~~~~~~~ 265 (394)
T PF03676_consen 186 VEVLRDNKETVGLELSLVTEGGPGRIEEPRRSNFERWIRFGDTPQDVLSELGPPDRIFYKSDDRMSIHSPSSHKQVPSKP 265 (394)
T ss_pred EEeeccCCCCcCcEEEEEEcCCCcccccccccCceEEEEeCCCHHHHHHhhCCccceeecccccccccccccccCCccCC
Confidence 9985433 3444332 3699999999999999999999999999999999998888888889
Q ss_pred CcceeeecccceeEEEeCCcceEEEEEeeeCCCCCcCcCceeeeeeEEeccCCCCCCccccCcccccCCCCChhHHHhhh
Q 019205 218 GDYFYNYYTRGLDILFDGQTHKIKKFIMHTNYPGHADFNSYIKCNFIILGSDFAGTSAEVHSYKNKITPNTKWEQVKEIL 297 (344)
Q Consensus 218 ~dyFyNYF~lGlDiL~d~~th~v~K~ILHtN~PG~y~Fn~Y~RC~f~I~~~~~~~~~~~~~~~~~~it~~~~~~~i~~~l 297 (344)
+|||||||+||||||||++||+|||||||||+||||+||+|+||||+|....++..+ +.......|+++++|++|++.|
T Consensus 266 ~~yf~nYf~~G~Dilfd~~~~~v~K~ILHtN~PG~~~Fn~y~rC~f~I~~~~~~~~~-~~~~~~~~i~~~~kwd~i~~~L 344 (394)
T PF03676_consen 266 SDYFYNYFTLGLDILFDGNTHRVKKFILHTNIPGHYDFNRYNRCNFEIELSNDSNET-DSPTNSPMITPYTKWDDIQEIL 344 (394)
T ss_pred CCEEEeccccceEEEEeCCCceEEEEEEecCCCCCccccceeeeeeEEEecCccccc-ccccccceeeccCCHhHhHHhh
Confidence 999999999999999999999999999999999999999999999999997644322 2222233599999999999999
Q ss_pred CCCC-CceEecCCCCC--CCCcceEEeeeCCeEEEEecCCceEEEEEeeC
Q 019205 298 GDCG-RAAIQTQGSTS--NPFGSTFVYGYQNIAFEVMKNGYISTVTMFQS 344 (344)
Q Consensus 298 ~~~~-rpvvlnR~~~~--npfGsT~lyG~~~iifEVm~N~~IasvTlf~~ 344 (344)
.... |||||+|++++ ||||+|+||||+|||||||+||+|||||||+.
T Consensus 345 ~~~~~~pvvl~r~s~~n~npfGsT~~yG~~~~IfEVm~n~~IasVTly~~ 394 (394)
T PF03676_consen 345 GKAEDRPVVLNRASSSNDNPFGSTFLYGYQGIIFEVMKNGHIASVTLYQA 394 (394)
T ss_pred cccccCCcccccccccCCCCCcceeEeCCCCEEEEEecCCcEEEEEEecC
Confidence 7655 99999999886 99999999999999999999999999999973
No 2
>KOG2819 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=5.5e-110 Score=795.58 Aligned_cols=329 Identities=46% Similarity=0.790 Sum_probs=298.0
Q ss_pred CCCCccceEEEcCCCCeEEEecCCCCeEEEEEEeeCCCceEEEcceeccCCCCcceeeeeecccCCCCCCcccCCCceEE
Q 019205 2 QEPLKLDIIISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYM 81 (344)
Q Consensus 2 ~~Pl~~~ivi~lp~~GirL~Fd~~~QRL~lIEv~d~~~~~L~Y~~~~~~~p~~~~tf~~Iy~~FGPTyPG~y~~~~~~Y~ 81 (344)
++||..||||+||++||||+|||.+||||||||.|+++++|+|++..|++|++.||+++|+++|||||||.||+++++|+
T Consensus 49 ~~Pl~~DiIinl~qdGirL~FD~~sQrLKlIEV~dl~~vklrY~gv~fnsp~~lpTieqi~~sFGaThPGvYd~~~~iy~ 128 (413)
T KOG2819|consen 49 QDPLSHDIIINLPQDGIRLMFDPFSQRLKLIEVFDLKKVKLRYCGVHFNSPAILPTIEQIDQSFGATHPGVYDSAHQIYV 128 (413)
T ss_pred CCCcceeEEEecCCCceEEEechhhhceeEEEEecceEEEEEEeeeEecCcccchhHHHHHHhhCCCCCCCcCChhhhce
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecceEEEEeCCcccccccccc--CCCccccCCCCCCcceeEEEEEeCCCCcccccCCccccccCCCCC----CCCeeE
Q 019205 82 LFYPGLSFAFPIPAQYADCCQDR--EAELPLEFPDGTTPVTCRVSIYDGSADKKVGVGSLFDKAIAPSLP----VGSLYI 155 (344)
Q Consensus 82 LsYpGvaF~Fpi~~~~~~~~~~~--~~~l~l~~~~~~~~~~~~m~I~~~~~~~~~~~G~s~~e~~~p~l~----~g~~~~ 155 (344)
|+||||||+||.+....+.+..+ .+..+|.|++|++|++|||+|| .|++..|++.|.+| .|++|.
T Consensus 129 l~~~GLSF~fp~~~~~~~~~~~g~~h~l~sL~~~~g~tPv~~kmsiY---------~g~n~~e~~~~~~plscy~gq~~~ 199 (413)
T KOG2819|consen 129 LSWPGLSFCFPGGENSNPKVHPGFAHGLRSLVFPAGATPVVTKMSIY---------RGSNPSEPESPDLPLSCYVGQLYT 199 (413)
T ss_pred eecCceEEECCCCCCCCcccccCccccceeeEecCCCCceeEEEEEe---------cCCCccccccCCccchhhhhhhhh
Confidence 99999999999765544444333 3467999999999999999999 99999999999776 467777
Q ss_pred EEEEEEcCC----cEEEE---------------eceeEEEcCCCHHHHHHhcCCCCccccccCCceeeecCCCCCCCCCc
Q 019205 156 EEVHAKLGE----ELHFT---------------VGSQHIPFGASPQDVWTELGRPCGIHQKQVDQMVIHSASDPRPRSTL 216 (344)
Q Consensus 156 e~v~v~~~~----~l~f~---------------~~~~~I~fG~T~QDVl~eLG~P~~if~K~ddrM~IH~~~~~~~~~~~ 216 (344)
+.|.|.+.+ ||.+. ...++|.||+|||||+++||+|++||||+||||+||+++.+|+.+++
T Consensus 200 rsv~~lr~~~~~~gl~lkl~t~~Gr~l~~~~~~v~~r~~~FGdScqDV~t~LGaP~kvf~Ks~DkMkIHs~s~~r~~~t~ 279 (413)
T KOG2819|consen 200 RSVEVLREGGNPVGLDLKLDTQCGRILLPERVSVYTRQIYFGDSCQDVQTMLGAPTKVFYKSEDKMKIHSPSPKRQLPTK 279 (413)
T ss_pred cccccccCCCCccceeEeecccCCcccccccceEeeEeeecCCcHhHHHHHhCCCcccccccccceeecCCCCcccCCCc
Confidence 777776553 33332 34679999999999999999999999999999999999999999999
Q ss_pred CCcceeeecccceeEEEeCCcceEEEEEeeeCCCCCcCcCceeeeeeEEeccCCCCCCccccCcccccCCCCChhHHHhh
Q 019205 217 CGDYFYNYYTRGLDILFDGQTHKIKKFIMHTNYPGHADFNSYIKCNFIILGSDFAGTSAEVHSYKNKITPNTKWEQVKEI 296 (344)
Q Consensus 217 ~~dyFyNYF~lGlDiL~d~~th~v~K~ILHtN~PG~y~Fn~Y~RC~f~I~~~~~~~~~~~~~~~~~~it~~~~~~~i~~~ 296 (344)
++|||||||++|+|||||+.||+|||||||||+|||++||+|+||||+|.+..+.. +.+....|++++|||+|+++
T Consensus 280 ~ndyFfNYFtlGlDiLFD~~t~kvkKFVLHTNyPGH~dFnmY~rCnF~i~l~ad~~----~ads~~ei~t~skwD~ise~ 355 (413)
T KOG2819|consen 280 CNDYFFNYFTLGLDILFDAVTHKVKKFVLHTNYPGHCDFNMYHRCNFQIFLNADAA----EADSQTEIRTYSKWDEISEA 355 (413)
T ss_pred CcchhhhhhhcchhheeecccceeeEEEEeccCCCcccccceeeeEEEEEccCCcc----ccccCceeccccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999986422 22344567889999999999
Q ss_pred hC-CCCCceEecCCCC-CCCCcceEEeeeCCeEEEEecCCceEEEEEee
Q 019205 297 LG-DCGRAAIQTQGST-SNPFGSTFVYGYQNIAFEVMKNGYISTVTMFQ 343 (344)
Q Consensus 297 l~-~~~rpvvlnR~~~-~npfGsT~lyG~~~iifEVm~N~~IasvTlf~ 343 (344)
|+ +++|||||.|.++ +||||||+||||+++|||||+|++|+|||+|+
T Consensus 356 ~~~~~~rPvvlhrq~st~nPFGSTfcyG~q~~ifEvm~n~~i~svt~yd 404 (413)
T KOG2819|consen 356 LGSPPERPVVLHRQSSTSNPFGSTFCYGYQRMIFEVMENGHIASVTIYD 404 (413)
T ss_pred hcCCCCCCceeeccccccCCCccchhhhhhhhhhhhhccCcccceEeec
Confidence 97 7899999999765 89999999999999999999999999999996
No 3
>PF04355 SmpA_OmlA: SmpA / OmlA family; InterPro: IPR007450 This is a bacterial outer membrane lipoprotein, possibly involved in maintaining the structural integrity of the cell envelope []. The lipid attachment site is a conserved N-terminal cysteine residue sometimes found adjacent to the OmpA domain (IPR006665 from INTERPRO).; GO: 0019867 outer membrane; PDB: 4DM5_C 2PXG_A 2YH9_B 2KXX_A 2KM7_A.
Probab=57.01 E-value=5.2 Score=30.30 Aligned_cols=21 Identities=29% Similarity=0.324 Sum_probs=17.0
Q ss_pred EEEcCCCHHHHHHhcCCCCcc
Q 019205 174 HIPFGASPQDVWTELGRPCGI 194 (344)
Q Consensus 174 ~I~fG~T~QDVl~eLG~P~~i 194 (344)
.|.-|.|-++|.+.||+|...
T Consensus 11 ~i~~GmTk~qV~~lLG~P~~~ 31 (71)
T PF04355_consen 11 QIKPGMTKDQVRALLGSPSLR 31 (71)
T ss_dssp TT-TTSBHHHHHHHHTS-SEE
T ss_pred hhcCCCCHHHHHHhcCCCCcc
Confidence 567898899999999999887
No 4
>PRK11251 DNA-binding transcriptional activator OsmE; Provisional
Probab=55.28 E-value=22 Score=30.16 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=18.6
Q ss_pred EEEcCCCHHHHHHhcCCCCcc
Q 019205 174 HIPFGASPQDVWTELGRPCGI 194 (344)
Q Consensus 174 ~I~fG~T~QDVl~eLG~P~~i 194 (344)
.|..|.|-|+|...||.|...
T Consensus 35 qv~~GmTr~qV~~~lGtP~~~ 55 (109)
T PRK11251 35 DVKKGMTRQQVAQIAGKPSSE 55 (109)
T ss_pred HcCCCCCHHHHHHHcCCCCcc
Confidence 678899999999999999754
No 5
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=51.04 E-value=10 Score=34.17 Aligned_cols=20 Identities=25% Similarity=0.316 Sum_probs=16.7
Q ss_pred EEEEEeeeCCCCCcCcCcee
Q 019205 240 IKKFIMHTNYPGHADFNSYI 259 (344)
Q Consensus 240 v~K~ILHtN~PG~y~Fn~Y~ 259 (344)
--|+=+-+|+||||+++++-
T Consensus 133 ~g~ye~~C~iPGHy~AGM~g 152 (158)
T COG4454 133 AGKYEFACNIPGHYEAGMVG 152 (158)
T ss_pred CccEEEEecCCCcccCCcEE
Confidence 34677899999999999964
No 6
>PF14105 DUF4278: Domain of unknown function (DUF4278)
Probab=47.45 E-value=33 Score=25.17 Aligned_cols=14 Identities=21% Similarity=0.301 Sum_probs=8.0
Q ss_pred EEEeecceEEEEeC
Q 019205 80 YMLFYPGLSFAFPI 93 (344)
Q Consensus 80 Y~LsYpGvaF~Fpi 93 (344)
..+.|+|+++.+..
T Consensus 24 v~~~YRG~~y~~~~ 37 (57)
T PF14105_consen 24 VEGTYRGQDYRFRY 37 (57)
T ss_pred eeeeECcceecccc
Confidence 46666666664443
No 7
>PF11399 DUF3192: Protein of unknown function (DUF3192); InterPro: IPR021534 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=38.96 E-value=24 Score=29.68 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=22.9
Q ss_pred EEEcCCCHHHHHHhcCCCCccccccCC
Q 019205 174 HIPFGASPQDVWTELGRPCGIHQKQVD 200 (344)
Q Consensus 174 ~I~fG~T~QDVl~eLG~P~~if~K~dd 200 (344)
.+.+|.|-++|++.||.|+-.--|..+
T Consensus 30 ~L~lg~s~~~V~~~lG~pdfsEa~~~~ 56 (102)
T PF11399_consen 30 KLSLGMSKDQVIALLGTPDFSEAYRKD 56 (102)
T ss_pred hcCCCCCHHHHHHHhCCCCchhheeeC
Confidence 788999999999999999987655544
No 8
>PF15530 Toxin_50: Putative toxin 50
Probab=35.22 E-value=41 Score=30.35 Aligned_cols=35 Identities=37% Similarity=0.767 Sum_probs=24.5
Q ss_pred ecccCCCCCCcc-cCCC----------ceEEEeec--ceEEEEeCCcc
Q 019205 62 YALFGPTFPGVY-DKER----------SVYMLFYP--GLSFAFPIPAQ 96 (344)
Q Consensus 62 y~~FGPTyPG~y-~~~~----------~~Y~LsYp--GvaF~Fpi~~~ 96 (344)
-=.|||=+||.+ ++++ ...-+||- |+.|+|-+-..
T Consensus 90 Gi~FGPYfpg~~gd~~rdyS~~~g~Gv~Sv~~S~gkDG~gfSFgvGps 137 (168)
T PF15530_consen 90 GISFGPYFPGVFGDPDRDYSINLGFGVGSVEISYGKDGFGFSFGVGPS 137 (168)
T ss_pred eeecCCcCccccCCCCccceecccccceEeeeeecccCceEEeecCCc
Confidence 347999999999 5432 23345553 99999998554
No 9
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=35.20 E-value=16 Score=32.68 Aligned_cols=30 Identities=27% Similarity=0.479 Sum_probs=23.0
Q ss_pred CCCHHHHHHhcCCCCccccccCCceeeecC
Q 019205 178 GASPQDVWTELGRPCGIHQKQVDQMVIHSA 207 (344)
Q Consensus 178 G~T~QDVl~eLG~P~~if~K~ddrM~IH~~ 207 (344)
|+|-||++++||.|..+-++--+...|+..
T Consensus 40 G~sEeeii~~LG~P~~iA~~i~~~~~i~~~ 69 (181)
T PF08006_consen 40 GKSEEEIIAELGSPKEIAREILAEYSIKEE 69 (181)
T ss_pred CCCHHHHHHHcCCHHHHHHHHHHhhhhhhh
Confidence 779999999999999887665444455543
No 10
>PF14504 CAP_assoc_N: CAP-associated N-terminal
Probab=33.69 E-value=27 Score=30.59 Aligned_cols=20 Identities=35% Similarity=0.534 Sum_probs=17.7
Q ss_pred cCCCHHHHHHhcCCCCcccc
Q 019205 177 FGASPQDVWTELGRPCGIHQ 196 (344)
Q Consensus 177 fG~T~QDVl~eLG~P~~if~ 196 (344)
||+|.++|.+.||.|.|+--
T Consensus 1 IG~s~~~v~~~~G~P~R~~~ 20 (141)
T PF14504_consen 1 IGKSKEEVEEKLGEPDRIDP 20 (141)
T ss_pred CCCCHHHHHHHcCCccEeec
Confidence 69999999999999998743
No 11
>PF02728 Cu_amine_oxidN3: Copper amine oxidase, N3 domain; InterPro: IPR015802 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents one (N3) of the two N-terminal domains (N2/N3) that share a similar structure.; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1TU5_A 2PNC_B 3MPH_B 3HII_B 3HI7_A 3K5T_A 3HIG_A 1SPU_A 2WGQ_A 2WO0_A ....
Probab=29.78 E-value=65 Score=26.21 Aligned_cols=29 Identities=28% Similarity=0.512 Sum_probs=24.0
Q ss_pred eecccc---eeEEEeCCcceEEEEEeee-CCCC
Q 019205 223 NYYTRG---LDILFDGQTHKIKKFIMHT-NYPG 251 (344)
Q Consensus 223 NYF~lG---lDiL~d~~th~v~K~ILHt-N~PG 251 (344)
|||-|= |=+++|..+..|.|+..+. .+||
T Consensus 68 n~YahPi~gl~~~vD~~~~~vi~i~d~~v~~p~ 100 (101)
T PF02728_consen 68 NFYAHPIEGLEPLVDLDSMEVIRIEDRGVFYPG 100 (101)
T ss_dssp -GGGSEEECEEEEEETTTTEEEEEEEEEEEETT
T ss_pred cccccccCceEEEEECCCCEEEEEEeCCceeeC
Confidence 777774 5589999999999999999 8776
No 12
>PF00609 DAGK_acc: Diacylglycerol kinase accessory domain; InterPro: IPR000756 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. The DAG kinase domain is assumed to be an accessory domain. Upon cell stimulation, DAG kinase converts DAG into phosphatidate, initiating the resynthesis of phosphatidylinositols and attenuating protein kinase C activity. It catalyses the reaction: ATP + 1,2-diacylglycerol = ADP + 1,2-diacylglycerol 3-phosphate. The enzyme is stimulated by calcium and phosphatidylserine and phosphorylated by protein kinase C. This domain is always associated with IPR001206 from INTERPRO.; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway
Probab=29.58 E-value=20 Score=31.64 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=15.0
Q ss_pred eeeecccceeEEEeCCcc
Q 019205 221 FYNYYTRGLDILFDGQTH 238 (344)
Q Consensus 221 FyNYF~lGlDiL~d~~th 238 (344)
|.|||..|+|.-+....|
T Consensus 2 ~~NYfsiG~DA~ia~~Fh 19 (161)
T PF00609_consen 2 MNNYFSIGVDAQIALGFH 19 (161)
T ss_pred eEecccccHhhHHHHHHh
Confidence 889999999998885533
No 13
>KOG2667 consensus COPII vesicle protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.00 E-value=65 Score=32.99 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=17.4
Q ss_pred cceeeeeec--ccCCCCCCcccC
Q 019205 55 LATFVAVYA--LFGPTFPGVYDK 75 (344)
Q Consensus 55 ~~tf~~Iy~--~FGPTyPG~y~~ 75 (344)
...|.|+-+ .||+.|||..+|
T Consensus 235 ~~n~SH~InhLSFG~~~p~~~nP 257 (379)
T KOG2667|consen 235 NLNFSHRINHLSFGEYIPGIVNP 257 (379)
T ss_pred cCCceEEEeeeccCCCCcccccC
Confidence 367888775 999999998876
No 14
>PRK11548 outer membrane biogenesis protein BamE; Provisional
Probab=24.23 E-value=48 Score=27.74 Aligned_cols=20 Identities=35% Similarity=0.431 Sum_probs=17.6
Q ss_pred EEEcCCCHHHHHHhcCCCCc
Q 019205 174 HIPFGASPQDVWTELGRPCG 193 (344)
Q Consensus 174 ~I~fG~T~QDVl~eLG~P~~ 193 (344)
.|..|.|-|+|...||.|.-
T Consensus 45 ~l~~GmTk~qV~~lLGtP~~ 64 (113)
T PRK11548 45 KIHVGMTQQQVAYTLGTPMM 64 (113)
T ss_pred HhcCCCCHHHHHHHcCCCcc
Confidence 67889999999999999943
No 15
>PF09697 Porph_ging: Protein of unknown function (Porph_ging); InterPro: IPR019115 This family of proteins of unknown function is found in species belonging to the bacteroidetes.
Probab=23.84 E-value=26 Score=27.38 Aligned_cols=15 Identities=27% Similarity=0.395 Sum_probs=14.1
Q ss_pred CcceEEeeeCCeEEE
Q 019205 315 FGSTFVYGYQNIAFE 329 (344)
Q Consensus 315 fGsT~lyG~~~iifE 329 (344)
+|+....|.||+|+|
T Consensus 56 ~GP~~f~GLPGLILE 70 (70)
T PF09697_consen 56 FGPWKFGGLPGLILE 70 (70)
T ss_pred CCChhhCCCCeEEeC
Confidence 699999999999998
No 16
>PF14504 CAP_assoc_N: CAP-associated N-terminal
Probab=22.02 E-value=79 Score=27.64 Aligned_cols=36 Identities=19% Similarity=0.253 Sum_probs=31.8
Q ss_pred eeEEEcCCCHHHHHHhcC-CCCccccccCCceeeecC
Q 019205 172 SQHIPFGASPQDVWTELG-RPCGIHQKQVDQMVIHSA 207 (344)
Q Consensus 172 ~~~I~fG~T~QDVl~eLG-~P~~if~K~ddrM~IH~~ 207 (344)
..-|.+|+|.++|...+| .|...+.|.+.+..+-..
T Consensus 59 ~~p~kiG~s~~~v~~~~~~~p~~~i~~~~~~Y~~els 95 (141)
T PF14504_consen 59 VSPFKIGMSKSEVFKKLGIEPEFSIKKGNNSYQFELS 95 (141)
T ss_pred cCCeecCCCHHHHHHhcCCCccEEEEECCEEEEEecC
Confidence 347899999999999999 999999999988888654
No 17
>PF10049 DUF2283: Protein of unknown function (DUF2283); InterPro: IPR019270 Members of this family of hypothetical proteins have no known function.
Probab=21.79 E-value=1.5e+02 Score=21.24 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=18.5
Q ss_pred CCCeEEEecCCCCeEEEEEEeeCC
Q 019205 15 DHGFHLRFDPWSQRLRLIEIFDIK 38 (344)
Q Consensus 15 ~~GirL~Fd~~~QRL~lIEv~d~~ 38 (344)
++||-|.|| ...|+.=|||++.|
T Consensus 28 ~~~iild~d-~~G~ivGIEIl~aS 50 (50)
T PF10049_consen 28 DDGIILDYD-EDGRIVGIEILDAS 50 (50)
T ss_pred cCCEEEEEC-CCCCEEEEEEEecC
Confidence 348999999 46799999999864
No 18
>PF01846 FF: FF domain; InterPro: IPR002713 The FF domain may be involved in protein-protein interaction []. It often occurs as multiple copies and often accompanies WW domains IPR001202 from INTERPRO. PRP40 from yeast encodes a novel, essential splicing component that associates with the yeast U1 small nuclear ribonucleoprotein particle [].; PDB: 3HFH_B 2KIS_A 2DOD_A 2JUC_A 2LKS_A 1UZC_A 2KZG_A 2L9V_A 2DOF_A 2KFD_A ....
Probab=20.18 E-value=67 Score=22.51 Aligned_cols=19 Identities=47% Similarity=0.747 Sum_probs=15.2
Q ss_pred cCCCCChhHHHhhhCCCCC
Q 019205 284 ITPNTKWEQVKEILGDCGR 302 (344)
Q Consensus 284 it~~~~~~~i~~~l~~~~r 302 (344)
|++.++|+++...+..+.|
T Consensus 15 i~~~s~W~~~~~~l~~dpr 33 (51)
T PF01846_consen 15 ITPYSSWEEVKPKLSKDPR 33 (51)
T ss_dssp S-TTSSHHHHHHHHTTSCH
T ss_pred CCCCCcHHHHHHHHccCHH
Confidence 8999999999999965543
Done!