Query 019205
Match_columns 344
No_of_seqs 117 out of 151
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 12:31:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019205.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019205hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yh9_A Small protein A, BAME p 76.4 2.7 9.2E-05 32.4 4.1 21 174-194 12-32 (88)
2 2km7_A Small protein A; BAME, 68.1 5.4 0.00019 31.7 4.2 21 174-194 26-46 (102)
3 4dm5_A Osmotically inducible l 23.5 35 0.0012 27.6 1.8 22 175-196 24-45 (103)
4 2pxg_A Outer membrane protein; 21.8 28 0.00097 28.3 1.0 21 174-194 25-45 (118)
5 4h0a_A Uncharacterized protein 17.3 47 0.0016 31.5 1.6 20 177-196 45-64 (323)
6 1f46_A Cell division protein Z 15.2 50 0.0017 27.6 1.1 26 68-95 61-86 (140)
7 3poj_A Mannan-binding lectin s 14.5 93 0.0032 23.8 2.5 25 244-270 16-40 (115)
8 4ifa_A Extracellular protein c 12.2 84 0.0029 30.1 1.8 23 174-196 52-74 (339)
9 2k54_A Protein ATU0742; protei 12.1 1.4E+02 0.0047 22.6 2.8 16 327-343 98-113 (123)
10 1nzi_A Complement C1S componen 10.9 1.5E+02 0.005 24.0 2.7 21 247-269 11-31 (159)
No 1
>2yh9_A Small protein A, BAME protein; lipoprotein, 3D domain SWAP, membrane protein; 1.80A {Escherichia coli}
Probab=76.37 E-value=2.7 Score=32.45 Aligned_cols=21 Identities=33% Similarity=0.377 Sum_probs=18.9
Q ss_pred EEEcCCCHHHHHHhcCCCCcc
Q 019205 174 HIPFGASPQDVWTELGRPCGI 194 (344)
Q Consensus 174 ~I~fG~T~QDVl~eLG~P~~i 194 (344)
.|..|.|-++|...||+|..+
T Consensus 12 ~i~~GmTk~qV~~lLG~P~~~ 32 (88)
T 2yh9_A 12 KIRVGMTQQQVAYALGTPLMS 32 (88)
T ss_dssp TCCTTCBHHHHHHHHCSCSEE
T ss_pred hccCCCCHHHHHHHcCCCccc
Confidence 678899999999999999875
No 2
>2km7_A Small protein A; BAME, SMPA, BAM complex, OMP85, YAET, cell membrane, cell OU membrane, lipoprotein, membrane, palmitate, membrane protei; NMR {Escherichia coli} PDB: 2kxx_A
Probab=68.14 E-value=5.4 Score=31.70 Aligned_cols=21 Identities=33% Similarity=0.377 Sum_probs=18.9
Q ss_pred EEEcCCCHHHHHHhcCCCCcc
Q 019205 174 HIPFGASPQDVWTELGRPCGI 194 (344)
Q Consensus 174 ~I~fG~T~QDVl~eLG~P~~i 194 (344)
.|..|.|-++|...||+|..+
T Consensus 26 ~i~~GmTk~qV~~lLG~P~~~ 46 (102)
T 2km7_A 26 KIRVGMTQQQVAYALGTPLMS 46 (102)
T ss_dssp TCCTTCBHHHHHHHHCCCCCC
T ss_pred hccCCCCHHHHHHhcCCCccc
Confidence 678899999999999999775
No 3
>4dm5_A Osmotically inducible lipoprotein OSME; unknown function; HET: MSE; 1.50A {Pseudomonas aeruginosa PAO1}
Probab=23.49 E-value=35 Score=27.60 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=18.8
Q ss_pred EEcCCCHHHHHHhcCCCCcccc
Q 019205 175 IPFGASPQDVWTELGRPCGIHQ 196 (344)
Q Consensus 175 I~fG~T~QDVl~eLG~P~~if~ 196 (344)
|.=|.|-|+|+..+|+|..+..
T Consensus 24 V~~GMTk~qV~rigG~PsS~~~ 45 (103)
T 4dm5_A 24 VEKGMSQQEVLRIGGTPSGTQK 45 (103)
T ss_dssp CCTTCBHHHHHHHHCSCSEEEE
T ss_pred hcCCCCHHHHHHhcCCCcceEE
Confidence 4568999999999999988754
No 4
>2pxg_A Outer membrane protein; two layer alpha/beta plait, two layer sandwich architecture; NMR {Xanthomonas axonopodis PV}
Probab=21.77 E-value=28 Score=28.33 Aligned_cols=21 Identities=33% Similarity=0.388 Sum_probs=18.5
Q ss_pred EEEcCCCHHHHHHhcCCCCcc
Q 019205 174 HIPFGASPQDVWTELGRPCGI 194 (344)
Q Consensus 174 ~I~fG~T~QDVl~eLG~P~~i 194 (344)
.|..|.|-++|...||.|...
T Consensus 25 ql~~GMTk~QV~~lLGtP~~~ 45 (118)
T 2pxg_A 25 QLQVGQSKQQVSALLGTPSIP 45 (118)
T ss_dssp TTCCCSCHHHHHHHHTSCCCC
T ss_pred HccCCCCHHHHHHHcCCCccc
Confidence 567799999999999999765
No 5
>4h0a_A Uncharacterized protein; CAP protein family, cysteine-rich secretory proteins, struct genomics, joint center for structural genomics; 1.90A {Staphylococcus aureus subsp}
Probab=17.31 E-value=47 Score=31.45 Aligned_cols=20 Identities=10% Similarity=0.180 Sum_probs=18.2
Q ss_pred cCCCHHHHHHhcCCCCcccc
Q 019205 177 FGASPQDVWTELGRPCGIHQ 196 (344)
Q Consensus 177 fG~T~QDVl~eLG~P~~if~ 196 (344)
||++.++|...||.|.|+.-
T Consensus 45 IG~~~~~v~~~~G~P~R~~~ 64 (323)
T 4h0a_A 45 VGKDIKVLTSKFGQADRVYP 64 (323)
T ss_dssp TTSBTHHHHHHHCSCSEEEE
T ss_pred hCCCHHHHHHHhCCcccccc
Confidence 69999999999999999853
No 6
>1f46_A Cell division protein ZIPA; transmembrane, inner membrane, cell cycle; 1.50A {Escherichia coli} SCOP: d.129.4.1 PDB: 1f47_B 1s1j_A* 1s1s_A* 1y2g_A* 1f7w_A 1f7x_A 1y2f_A*
Probab=15.25 E-value=50 Score=27.60 Aligned_cols=26 Identities=27% Similarity=0.609 Sum_probs=20.0
Q ss_pred CCCCcccCCCceEEEeecceEEEEeCCc
Q 019205 68 TFPGVYDKERSVYMLFYPGLSFAFPIPA 95 (344)
Q Consensus 68 TyPG~y~~~~~~Y~LsYpGvaF~Fpi~~ 95 (344)
+-||.|+++ .=..++|||+|.+.+|.
T Consensus 61 ~~pg~Fd~~--~~~~~t~gvtlfl~lP~ 86 (140)
T 1f46_A 61 VKPGTFDPE--MKDFTTPGVTIFMQVPS 86 (140)
T ss_dssp STTCCCCTT--CCSCEESEEEEEEEECS
T ss_pred CCCCCCCcc--hhcCccCcEEEEEECCC
Confidence 457777764 33468999999999986
No 7
>3poj_A Mannan-binding lectin serine protease 1; CUB domain, Ca2+ binding site, complex with ethylamine, COMP protein, lectin pathway of complement; 1.45A {Rattus norvegicus} PDB: 3pob_A 3pof_A 3pog_A 3poi_A 3poe_A
Probab=14.48 E-value=93 Score=23.82 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=18.2
Q ss_pred EeeeCCCCCcCcCceeeeeeEEeccCC
Q 019205 244 IMHTNYPGHADFNSYIKCNFIILGSDF 270 (344)
Q Consensus 244 ILHtN~PG~y~Fn~Y~RC~f~I~~~~~ 270 (344)
|.--|+|+.|+=| ..|.|.|.....
T Consensus 16 i~SP~yP~~Yp~~--~~C~w~I~~~~g 40 (115)
T 3poj_A 16 ITSPDYPNPYPKS--SECSYTIDLEEG 40 (115)
T ss_dssp EECTTTTSCCCTT--CEEEEEEECCTT
T ss_pred EcCCCCCcCCcCC--CeEEEEEEcCCC
Confidence 3344889877644 579999999753
No 8
>4ifa_A Extracellular protein containing A SCP domain; vaccine candi virulence, pathogenesis, center for structural genomics of infectious diseases; HET: MSE; 1.50A {Bacillus anthracis}
Probab=12.24 E-value=84 Score=30.09 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=19.5
Q ss_pred EEEcCCCHHHHHHhcCCCCcccc
Q 019205 174 HIPFGASPQDVWTELGRPCGIHQ 196 (344)
Q Consensus 174 ~I~fG~T~QDVl~eLG~P~~if~ 196 (344)
-.-||++.++|...||.|.|+..
T Consensus 52 ~~~IG~~~~~v~~~~G~P~R~~~ 74 (339)
T 4ifa_A 52 LNMIGGDSENLLAKWGEPSRIEP 74 (339)
T ss_dssp HHHTTSBHHHHHHHHCSCSEEEE
T ss_pred HHHhCCCHHHHHHHhCCCccccc
Confidence 34569999999999999999854
No 9
>2k54_A Protein ATU0742; protein of unknown function, structural genomics, PSI-2, Pro structure initiative; NMR {Agrobacterium tumefaciens str} SCOP: d.17.4.29
Probab=12.09 E-value=1.4e+02 Score=22.64 Aligned_cols=16 Identities=31% Similarity=0.403 Sum_probs=13.9
Q ss_pred EEEEecCCceEEEEEee
Q 019205 327 AFEVMKNGYISTVTMFQ 343 (344)
Q Consensus 327 ifEVm~N~~IasvTlf~ 343 (344)
||+| +||.|+.++.|-
T Consensus 98 vf~v-~dGkI~~~~~~~ 113 (123)
T 2k54_A 98 IYEV-ENGRIAKAWFKI 113 (123)
T ss_dssp EEEE-ETTEEEEEEEEE
T ss_pred EEEE-ECCEEEEEEEEc
Confidence 7887 999999999874
No 10
>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1
Probab=10.86 E-value=1.5e+02 Score=23.97 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=16.6
Q ss_pred eCCCCCcCcCceeeeeeEEeccC
Q 019205 247 TNYPGHADFNSYIKCNFIILGSD 269 (344)
Q Consensus 247 tN~PG~y~Fn~Y~RC~f~I~~~~ 269 (344)
-|+|+.|.=| ..|.|.|....
T Consensus 11 P~yP~~Yp~~--~~C~w~I~~~~ 31 (159)
T 1nzi_A 11 PNYPQAYPSE--VEKSWDIEVPE 31 (159)
T ss_dssp TTTTSCCCSS--EEEEEEEECCT
T ss_pred CCCccCCCCC--CCEEEEEEeCC
Confidence 3899887754 57999999875
Done!