BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019206
(344 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3P2M|A Chain A, Crystal Structure Of A Novel Esterase Rv0045c From
Mycobacterium Tuberculosis
Length = 330
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 55/134 (41%), Gaps = 32/134 (23%)
Query: 158 NSPPVLFLPGFGVGSFHYEKQLKDLGKDYRAWAIDFLGQGMSLPDEDPTPRSKEGDSTEE 217
++P V+FL G G + ++ + LG+ A A+D G G S
Sbjct: 80 SAPRVIFLHGGGQNAHTWDTVIVGLGEP--ALAVDLPGHGHS------------------ 119
Query: 218 KNFLWGFGDKAQPWASELAYSVDLWQDQVCYFIKEVIREPVYVVGNSLGGFVAVYFAACN 277
W + YS L + + ++E+ +VVG SLGG A+ AA
Sbjct: 120 ------------AWREDGNYSPQLNSETLAPVLRELAPGAEFVVGMSLGGLTAIRLAAMA 167
Query: 278 PHLVKGVTLLNATP 291
P LV + L++ TP
Sbjct: 168 PDLVGELVLVDVTP 181
>pdb|3IA2|A Chain A, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|B Chain B, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|C Chain C, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|D Chain D, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|E Chain E, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|F Chain F, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
Length = 271
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 223 GFGDKAQPWASELAYSVDLWQDQVCYFIKEVIREPVYVVGNSLGGF-VAVYFAACNPHLV 281
GFG QPW D + D + I+ + + V +VG S+GG VA Y A V
Sbjct: 56 GFGRSDQPWTGN---DYDTFADDIAQLIEHLDLKEVTLVGFSMGGGDVARYIARHGSARV 112
Query: 282 KGVTLLNA-TPFWGFSPN 298
G+ LL A TP +G P+
Sbjct: 113 AGLVLLGAVTPLFGQKPD 130
>pdb|1VA4|A Chain A, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|B Chain B, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|C Chain C, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|D Chain D, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|E Chain E, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|F Chain F, Pseudomonas Fluorescens Aryl Esterase
Length = 279
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 223 GFGDKAQPWASELAYSVDLWQDQVCYFIKEVIREPVYVVGNSLGGF-VAVYFAACNPHLV 281
GFG QPW D + D + I+ + + V +VG S+GG VA Y A V
Sbjct: 56 GFGRSDQPWTGN---DYDTFADDIAQLIEHLDLKEVTLVGFSMGGGDVARYIARHGSARV 112
Query: 282 KGVTLLNA-TPFWGFSPN 298
G+ LL A TP +G P+
Sbjct: 113 AGLVLLGAVTPLFGQKPD 130
>pdb|3T4U|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
Length = 271
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 223 GFGDKAQPWASELAYSVDLWQDQVCYFIKEVIREPVYVVGNSL-GGFVAVYFAACNPHLV 281
GFG QPW D + D + I+ + + V +VG S+ GG VA Y A V
Sbjct: 56 GFGRSDQPWTGN---DYDTFADDIAQLIEHLDLKEVTLVGFSMGGGDVARYIARHGSARV 112
Query: 282 KGVTLLNA-TPFWGFSPN 298
G+ LL A TP +G P+
Sbjct: 113 AGLVLLGAVTPLFGQKPD 130
>pdb|3HI4|A Chain A, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|B Chain B, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|C Chain C, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|D Chain D, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|E Chain E, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|F Chain F, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
Length = 271
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 223 GFGDKAQPWASELAYSVDLWQDQVCYFIKEVIREPVYVVGNSLGGF-VAVYFAACNPHLV 281
GFG QPW D + D + I+ + + V +VG S+GG VA Y A V
Sbjct: 56 GFGRSDQPWTGN---DYDTFADDIAQLIEHLDLKEVTLVGFSMGGGDVARYIARHGSARV 112
Query: 282 KGVTLLNA-TPFWGFSPN 298
G+ LL A TP +G P+
Sbjct: 113 AGLVLLGAVTPLFGQKPD 130
>pdb|3HEA|A Chain A, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|B Chain B, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|C Chain C, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|D Chain D, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|E Chain E, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|F Chain F, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
Length = 271
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 223 GFGDKAQPWASELAYSVDLWQDQVCYFIKEVIREPVYVVGNSLGGF-VAVYFAACNPHLV 281
GFG QPW D + D + I+ + + V +VG S+GG VA Y A V
Sbjct: 56 GFGRSDQPWTGN---DYDTFADDIAQLIEHLDLKEVTLVGFSMGGGDVARYIARHGSARV 112
Query: 282 KGVTLLNA-TPFWGFSPN 298
G+ LL A TP +G P+
Sbjct: 113 AGLVLLGAVTPIFGQKPD 130
>pdb|3KXP|A Chain A, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|B Chain B, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|C Chain C, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|D Chain D, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|E Chain E, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|F Chain F, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|G Chain G, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|H Chain H, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|I Chain I, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|J Chain J, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|K Chain K, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|L Chain L, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
Length = 314
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 234 ELAYSVDLWQDQVCYFIKEVIREPVYVVGNSLGGFVAVYFAACNPHLVKGVTLLNATPF 292
E Y + + D + I+ + R +VG+SLG +V AA P LV+ V ++ TP+
Sbjct: 112 ETGYEANDYADDIAGLIRTLARGHAILVGHSLGARNSVTAAAKYPDLVRSVVAIDFTPY 170
>pdb|3QYJ|A Chain A, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120.
pdb|3QYJ|B Chain B, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120
Length = 291
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 221 LWGFGDKAQPWA--SELAYSVDLW-QDQVCYFIKEVIREPVYVVGNSLGGFVAVYFAACN 277
L G+GD ++P + + YS + QDQV + ++ E YVVG+ G VA A +
Sbjct: 59 LRGYGDSSRPASVPHHINYSKRVMAQDQV-EVMSKLGYEQFYVVGHDRGARVAHRLALDH 117
Query: 278 PHLVKGVTLLNATP 291
PH VK + LL+ P
Sbjct: 118 PHRVKKLALLDIAP 131
>pdb|1C4X|A Chain A, 2-Hydroxy-6-Oxo-6-Phenylhexa-2,4-Dienoate Hydrolase (Bphd)
From Rhodococcus Sp. Strain Rha1
Length = 285
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 8/113 (7%)
Query: 221 LWGFGDKAQP--WASELAYSVDLWQDQVCYFIKEVIREPVYVVGNSLGGFVAVYFAACNP 278
L GFG P + + V + +Q+ + E ++VGNS+GG V + P
Sbjct: 66 LIGFGQSEYPETYPGHIMSWVGMRVEQILGLMNHFGIEKSHIVGNSMGGAVTLQLVVEAP 125
Query: 279 HLVKGVTLLNATPFWGFSPNPIRSPKLARILPWSGTFPLPASVRKLIE-FMYD 330
V L+ + +P R P+LAR+L + P R+LI F+YD
Sbjct: 126 ERFDKVALMGSVG----APMNARPPELARLLAFYAD-PRLTPYRELIHSFVYD 173
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 56/152 (36%), Gaps = 44/152 (28%)
Query: 161 PVLFLPGFGVGSFHYEK---QLKDLGKDYRAWAIDFLGQGMSLPDEDPTPRSKEGDSTEE 217
PV+ + G G G Y + L K YR A D +G
Sbjct: 27 PVILIHGSGPGVSAYANWRLTIPALSKFYRVIAPDMVG---------------------- 64
Query: 218 KNFLWGFGDKAQPWASELAYSVDLWQDQVCYFIKEVIREPVYVVGNSLGGFVAVYFAACN 277
+GF D+ + + YS D W D + + + E ++VGNS GG +A+ A
Sbjct: 65 ----FGFTDRPENYN----YSKDSWVDHIIGIMDALEIEKAHIVGNSFGGGLAIATALRY 116
Query: 278 PHLVKGVTLLNAT-----------PFWGFSPN 298
V + L+ A WG++P+
Sbjct: 117 SERVDRMVLMGAVGTRFDVTEGLNAVWGYTPS 148
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 90/244 (36%), Gaps = 54/244 (22%)
Query: 95 GYVIGGEEDAGSFPKEREAIPKVLIPGLPDEYNGESGAPI-TSC--------FWEWKPKF 145
G V +D + KE E + + + P AP+ TSC + KP+
Sbjct: 197 GMVTILVQDTDTALKELEKVTGIQLLNTP--------APLPTSCNPSDMSHGYVTVKPRV 248
Query: 146 NVHYEKAGCENVNSPPVLFLPGFGVGSFHYEKQLKDLGKD-YRAWAIDFLGQGMSLPDED 204
+H+ + G + P V GF + + Q+ L + YR A+D G G S
Sbjct: 249 RLHFVELG----SGPAVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGES----- 299
Query: 205 PTPRSKEGDSTEEKNFLWGFGDKAQPWASELAYSVDLWQDQVCYFIKEVIREPVYVVGNS 264
A P E V L ++ V + K + + V++ G+
Sbjct: 300 ----------------------SAPPEIEEYCMEV-LCKEMVTFLDKLGLSQAVFI-GHD 335
Query: 265 LGGFVAVYFAACNPHLVKGVTLLNATPFWGFSPN--PIRSPKLARILPWSGTFPLPASVR 322
GG + Y A P V+ V LN TPF +PN P+ S K + + F P
Sbjct: 336 WGGMLVWYMALFYPERVRAVASLN-TPFIPANPNMSPLESIKANPVFDYQLYFQEPGVAE 394
Query: 323 KLIE 326
+E
Sbjct: 395 AELE 398
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 71/188 (37%), Gaps = 37/188 (19%)
Query: 142 KPKFNVHYEKAGCENVNSPPVLFLPGFGVGSFHYEKQLKDLGKD-YRAWAIDFLGQGMSL 200
KP+ +H+ + G + P V GF + + Q+ L + YR A+D G G S
Sbjct: 26 KPRVRLHFVELG----SGPAVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGES- 80
Query: 201 PDEDPTPRSKEGDSTEEKNFLWGFGDKAQPWASELAYSVDLWQDQVCYFIKEVIREPVYV 260
A P E V L ++ V + K + + V++
Sbjct: 81 --------------------------SAPPEIEEYCMEV-LCKEMVTFLDKLGLSQAVFI 113
Query: 261 VGNSLGGFVAVYFAACNPHLVKGVTLLNATPFWGFSPN--PIRSPKLARILPWSGTFPLP 318
G+ GG + Y A P V+ V LN TPF +PN P+ S K + + F P
Sbjct: 114 -GHDWGGMLVWYMALFYPERVRAVASLN-TPFIPANPNMSPLESIKANPVFDYQLYFQEP 171
Query: 319 ASVRKLIE 326
+E
Sbjct: 172 GVAEAELE 179
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 71/188 (37%), Gaps = 37/188 (19%)
Query: 142 KPKFNVHYEKAGCENVNSPPVLFLPGFGVGSFHYEKQLKDLGKD-YRAWAIDFLGQGMSL 200
KP+ +H+ + G + P V GF + + Q+ L + YR A+D G G S
Sbjct: 41 KPRVRLHFVELG----SGPAVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGES- 95
Query: 201 PDEDPTPRSKEGDSTEEKNFLWGFGDKAQPWASELAYSVDLWQDQVCYFIKEVIREPVYV 260
A P E V L ++ V + K + + V++
Sbjct: 96 --------------------------SAPPEIEEYCMEV-LCKEMVTFLDKLGLSQAVFI 128
Query: 261 VGNSLGGFVAVYFAACNPHLVKGVTLLNATPFWGFSPN--PIRSPKLARILPWSGTFPLP 318
G+ GG + Y A P V+ V LN TPF +PN P+ S K + + F P
Sbjct: 129 -GHDWGGMLVWYMALFYPERVRAVASLN-TPFIPANPNMSPLESIKANPVFDYQLYFQEP 186
Query: 319 ASVRKLIE 326
+E
Sbjct: 187 GVAEAELE 194
>pdb|1IUN|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUN|B Chain B, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUO|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Acetates
pdb|1IUP|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Isobutyrates
pdb|1UK6|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Propionate
pdb|1UK7|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With N-Butyrate
pdb|1UK8|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With N-valerate
pdb|1UK9|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Isovalerate
pdb|1UKA|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With (S)-2-Methylbutyrate
pdb|1UKB|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With Benzoate
Length = 282
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 56/152 (36%), Gaps = 44/152 (28%)
Query: 161 PVLFLPGFGVGSFHYEK---QLKDLGKDYRAWAIDFLGQGMSLPDEDPTPRSKEGDSTEE 217
PV+ + G G G Y + L K YR A D +G
Sbjct: 27 PVILIHGSGPGVSAYANWRLTIPALSKFYRVIAPDMVG---------------------- 64
Query: 218 KNFLWGFGDKAQPWASELAYSVDLWQDQVCYFIKEVIREPVYVVGNSLGGFVAVYFAACN 277
+GF D+ + + YS D W D + + + E ++VGN+ GG +A+ A
Sbjct: 65 ----FGFTDRPENYN----YSKDSWVDHIIGIMDALEIEKAHIVGNAFGGGLAIATALRY 116
Query: 278 PHLVKGVTLLNAT-----------PFWGFSPN 298
V + L+ A WG++P+
Sbjct: 117 SERVDRMVLMGAAGTRFDVTEGLNAVWGYTPS 148
>pdb|3N2Z|B Chain B, The Structure Of Human Prolylcarboxypeptidase At 2.80
Angstroms Resolution
Length = 446
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 256 EPVYVVGNSLGGFVAVYFAACNPHLVKGVTLLNATPFWGF 295
+PV +G S GG +A +F PH+V G L + P W F
Sbjct: 126 QPVIAIGGSYGGMLAAWFRMKYPHMVVGA-LAASAPIWQF 164
>pdb|3PE6|A Chain A, Crystal Structure Of A Soluble Form Of Human Mgll In
Complex With An Inhibitor
Length = 303
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 70/170 (41%), Gaps = 33/170 (19%)
Query: 159 SPPVLFLPGFGVG--SFHYEKQLKDL-GKDYRAWAIDFLGQGMSLPDEDPTPRSKEGDST 215
+P L G G S YE+ + L G D +A D +G G S EG+
Sbjct: 40 TPKALIFVSHGAGEHSGRYEELARMLMGLDLLVFAHDHVGHGQS-----------EGERM 88
Query: 216 EEKNFLWGFGDKAQPWASELAYSVDLWQDQVCYFIKEVIREPVYVVGNSLGGFVAVYFAA 275
+F + ++ VD Q K+ PV+++G+S+GG +A+ AA
Sbjct: 89 VVSDF--------HVFVRDVLQHVDSMQ-------KDYPGLPVFLLGHSMGGAIAILTAA 133
Query: 276 CNPHLVKGVTLLN----ATPFWGFSPNPIRSPKLARILPWSGTFPLPASV 321
P G+ L++ A P + + + L +LP + P+ +SV
Sbjct: 134 ERPGHFAGMVLISPLVLANPESATTFKVLAAKVLNSVLPNLSSGPIDSSV 183
>pdb|2ES4|A Chain A, Crystal Structure Of The Burkholderia Glumae Lipase-
Specific Foldase In Complex With Its Cognate Lipase
pdb|2ES4|B Chain B, Crystal Structure Of The Burkholderia Glumae Lipase-
Specific Foldase In Complex With Its Cognate Lipase
pdb|1CVL|A Chain A, Crystal Structure Of Bacterial Lipase From Chromobacterium
Viscosum Atcc 6918
Length = 319
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 244 DQVCYFIKEVIREP----VYVVGNSLGGFVAVYFAACNPHLVKGVTLLNATPFWG 294
+Q+ ++K+V+ V ++G+S GG + Y AA P LV VT + TP G
Sbjct: 63 EQLLAYVKQVLAATGATKVNLIGHSQGGLTSRYVAAVAPQLVASVTTI-GTPHRG 116
>pdb|1TAH|B Chain B, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|A Chain A, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|C Chain C, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|D Chain D, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
Length = 318
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 244 DQVCYFIKEVIREP----VYVVGNSLGGFVAVYFAACNPHLVKGVTLLNATPFWG 294
+Q+ ++K+V+ V ++G+S GG + Y AA P LV VT + TP G
Sbjct: 62 EQLLAYVKQVLAATGATKVNLIGHSQGGLTSRYVAAVAPQLVASVTTI-GTPHRG 115
>pdb|1QGE|D Chain D, New Crystal Form Of Pseudomonas Glumae (Formerly
Chromobacterium Viscosum Atcc 6918) Lipase
Length = 222
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 244 DQVCYFIKEVIREP----VYVVGNSLGGFVAVYFAACNPHLVKGVTLLNATPFWG 294
+Q+ ++K+V+ V ++G+S GG + Y AA P LV VT + TP G
Sbjct: 63 EQLLAYVKQVLAATGATKVNLIGHSQGGLTSRYVAAVAPQLVASVTTIG-TPHRG 116
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 236 AYSVDLWQDQVCYFIKEVIREPVYVVGNSLGGFVAVYFAACNPHLVKGVTLL 287
+YS + Q+ I+E+ +P+ +VG+S+G +A A+ P +K + L+
Sbjct: 75 SYSSLTFLAQIDRVIQELPDQPLLLVGHSMGAMLATAIASVRPKKIKELILV 126
>pdb|3JWE|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
pdb|3JWE|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
Length = 320
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 87/232 (37%), Gaps = 52/232 (22%)
Query: 100 GEEDAGSFPKE---REAIPKVLIPGLPDEYNGESGAPITSCFWEWKPKFNVHYEKAGCEN 156
G ED S P+E R + LP N + C + WKP
Sbjct: 11 GPEDPSSMPEESSPRRTPQSIPYQDLPHLVNAD--GQYLFCRY-WKP------------- 54
Query: 157 VNSPPVLFLPGFGVG--SFHYEKQLKDL-GKDYRAWAIDFLGQGMSLPDEDPTPRSKEGD 213
+P L G G S YE+ + L G D +A D +G G S EG+
Sbjct: 55 TGTPKALIFVSHGAGEHSGRYEELARMLMGLDLLVFAHDHVGHGQS-----------EGE 103
Query: 214 STEEKNFLWGFGDKAQPWASELAYSVDLWQDQVCYFIKEVIREPVYVVGNSLGGFVAVYF 273
+F + ++ VD Q K+ PV+++G+S+GG +A+
Sbjct: 104 RMVVSDF--------HVFVRDVLQHVDSMQ-------KDYPGLPVFLLGHSMGGAIAILT 148
Query: 274 AACNPHLVKGVTLLN----ATPFWGFSPNPIRSPKLARILPWSGTFPLPASV 321
AA P G+ L++ A P + + + L +LP P+ +SV
Sbjct: 149 AAERPGHFAGMVLISPLVLANPESATTFKVLAAKVLNLVLPNLSLGPIDSSV 200
>pdb|3HJU|A Chain A, Crystal Structure Of Human Monoglyceride Lipase
pdb|3HJU|B Chain B, Crystal Structure Of Human Monoglyceride Lipase
Length = 342
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 69/170 (40%), Gaps = 33/170 (19%)
Query: 159 SPPVLFLPGFGVG--SFHYEKQLKDL-GKDYRAWAIDFLGQGMSLPDEDPTPRSKEGDST 215
+P L G G S YE+ + L G D +A D +G G S EG+
Sbjct: 58 TPKALIFVSHGAGEHSGRYEELARMLMGLDLLVFAHDHVGHGQS-----------EGERM 106
Query: 216 EEKNFLWGFGDKAQPWASELAYSVDLWQDQVCYFIKEVIREPVYVVGNSLGGFVAVYFAA 275
+F + ++ VD Q K+ PV+++G+S+GG +A+ AA
Sbjct: 107 VVSDF--------HVFVRDVLQHVDSMQ-------KDYPGLPVFLLGHSMGGAIAILTAA 151
Query: 276 CNPHLVKGVTLLN----ATPFWGFSPNPIRSPKLARILPWSGTFPLPASV 321
P G+ L++ A P + + + L +LP P+ +SV
Sbjct: 152 ERPGHFAGMVLISPLVLANPESATTFKVLAAKVLNLVLPNLSLGPIDSSV 201
>pdb|1YS1|X Chain X, Burkholderia Cepacia Lipase Complexed With Hexylphosphonic
Acid (R)-2-Methyl-3-Phenylpropyl Ester
pdb|1YS2|X Chain X, Burkholderia Cepacia Lipase Complexed With Hexylphosphonic
Acid (s) 2-methyl-3-phenylpropyl Ester
Length = 320
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 244 DQVCYFIKEVIREP----VYVVGNSLGGFVAVYFAACNPHLVKGVTLLNATPFWG 294
+Q+ ++K V+ V +VG+S GG + Y AA P LV VT + TP G
Sbjct: 63 EQLLAYVKTVLAATGATKVNLVGHSQGGLTSRYVAAVAPDLVASVTTI-GTPHRG 116
>pdb|1OIL|A Chain A, Structure Of Lipase
pdb|1OIL|B Chain B, Structure Of Lipase
pdb|4LIP|D Chain D, Pseudomonas Lipase Complexed With Rc-(rp, Sp)-
Dibutylcarbamoylglycero-3-o-butylphosphonate
pdb|4LIP|E Chain E, Pseudomonas Lipase Complexed With Rc-(rp, Sp)-
Dibutylcarbamoylglycero-3-o-butylphosphonate
pdb|1HQD|A Chain A, Pseudomonas Cepacia Lipase Complexed With Transition State
Analogue Of 1-Phenoxy-2-Acetoxy Butane
pdb|2LIP|A Chain A, Pseudomonas Lipase Open Conformation
pdb|3LIP|A Chain A, Open Conformation Of Pseudomonas Cepacia Lipase
pdb|5LIP|A Chain A, Pseudomonas Lipase Complexed With Rc-(Rp, Sp)-1,2-
Dioctylcarbamoylglycero-3-O-Octylphosphonate
pdb|2NW6|A Chain A, Burkholderia Cepacia Lipase Complexed With S-Inhibitor
Length = 320
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 244 DQVCYFIKEVIREP----VYVVGNSLGGFVAVYFAACNPHLVKGVTLLNATPFWG 294
+Q+ ++K V+ V +VG+S GG + Y AA P LV VT + TP G
Sbjct: 63 EQLLAYVKTVLAATGATKVNLVGHSQGGLTSRYVAAVAPDLVASVTTI-GTPHRG 116
>pdb|3PF8|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
pdb|3PF8|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
Length = 270
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 258 VYVVGNSLGGFVAVYFAACNPHLVKGVTLL 287
+Y+VG+S GG VA A P L+K V LL
Sbjct: 121 IYLVGHSQGGVVASMLAGLYPDLIKKVVLL 150
>pdb|3BWX|A Chain A, Crystal Structure Of An Alpha/beta Hydrolase (yp_496220.1)
From Novosphingobium Aromaticivorans Dsm 12444 At 1.50 A
Resolution
Length = 285
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 138 FWEWKPKFNVHYEKAGCENVNSPPVLFLPGFGVGSFHYEKQLKDLGKDYRAWAIDFLGQG 197
+W +H+ +A +++ PPVL LPG + +E L D+R + G+G
Sbjct: 9 YWTSSDGLRLHF-RAYEGDISRPPVLCLPGLTRNARDFEDLATRLAGDWRVLCPEXRGRG 67
Query: 198 MSLPDEDP 205
S +DP
Sbjct: 68 DSDYAKDP 75
>pdb|2XT0|A Chain A, Dehalogenase Dppa From Plesiocystis Pacifica Sir-I
Length = 297
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Query: 221 LWGFGDKAQPWASELAYSVDLWQDQVCYFIKEVIREPVYVVGNSLGGFVAVYFAACNPHL 280
L+GFG +P + Y+ + + F+ + E V +V GG + + P L
Sbjct: 81 LFGFGRSDKP-TDDAVYTFGFHRRSLLAFLDALQLERVTLVCQDWGGILGLTLPVDRPQL 139
Query: 281 VKGVTLLNATPFWGFSPN 298
V + ++N G SP
Sbjct: 140 VDRLIVMNTALAVGLSPG 157
>pdb|1J1I|A Chain A, Crystal Structure Of A His-Tagged Serine Hydrolase
Involved In The Carbazole Degradation (Carc Enzyme)
Length = 296
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 221 LWGFGDKAQPWASELAYSVDLWQDQVCYFIKEV-IREPVYVVGNSLGGFVAVYFAACNPH 279
+ GFG A+P ++ Y+ D + FIK + V +VGNS+GG + + +
Sbjct: 73 MLGFGKTAKP---DIEYTQDRRIRHLHDFIKAMNFDGKVSIVGNSMGGATGLGVSVLHSE 129
Query: 280 LVKGVTLLNA 289
LV + L+ +
Sbjct: 130 LVNALVLMGS 139
>pdb|3QM1|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate, Form Ii
Length = 265
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 258 VYVVGNSLGGFVAVYFAACNPHLVKGVTLL 287
+Y+VG++ GG VA A P L+K V LL
Sbjct: 121 IYLVGHAQGGVVASMLAGLYPDLIKKVVLL 150
>pdb|3PF9|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant
pdb|3PFB|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFB|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFC|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Ferulic
Acid
pdb|3S2Z|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
pdb|3S2Z|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
Length = 270
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 258 VYVVGNSLGGFVAVYFAACNPHLVKGVTLL 287
+Y+VG++ GG VA A P L+K V LL
Sbjct: 121 IYLVGHAQGGVVASMLAGLYPDLIKKVVLL 150
>pdb|4F5Z|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (l95v, A172v)
Length = 299
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 54/146 (36%), Gaps = 39/146 (26%)
Query: 146 NVHYEKAGCENVNSPPVLFLPGFGVGSFHYEKQLKDLGKDYRAWAIDFLGQGMSLPDEDP 205
+HY G + PVLFL G S+ + + + +R A D +G G S
Sbjct: 21 RMHYVDVGPRD--GTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKS------ 72
Query: 206 TPRSKEGDSTEEKNFLWGFGDKAQPWASELAYSVDLWQDQVCY---FIKEVIREPVYVVG 262
DK +L Y D D V Y FI+ V E V +V
Sbjct: 73 --------------------DK-----PDLDYFFD---DHVRYLDAFIEAVGLEEVVLVI 104
Query: 263 NSLGGFVAVYFAACNPHLVKGVTLLN 288
+ G + ++A NP VKG+ +
Sbjct: 105 HDWGSALGFHWAKRNPERVKGIACME 130
>pdb|3JW8|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase
pdb|3JW8|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase
Length = 320
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 67/170 (39%), Gaps = 33/170 (19%)
Query: 159 SPPVLFLPGFGVG--SFHYEKQLKDL-GKDYRAWAIDFLGQGMSLPDEDPTPRSKEGDST 215
+P L G G S YE+ + L G D +A D +G G S EG+
Sbjct: 57 TPKALIFVSHGAGEHSGRYEELARXLXGLDLLVFAHDHVGHGQS-----------EGERX 105
Query: 216 EEKNFLWGFGDKAQPWASELAYSVDLWQDQVCYFIKEVIREPVYVVGNSLGGFVAVYFAA 275
+F + ++ VD Q K+ PV+++G+S GG +A+ AA
Sbjct: 106 VVSDF--------HVFVRDVLQHVDSXQ-------KDYPGLPVFLLGHSXGGAIAILTAA 150
Query: 276 CNPHLVKGVTLLN----ATPFWGFSPNPIRSPKLARILPWSGTFPLPASV 321
P G L++ A P + + + L +LP P+ +SV
Sbjct: 151 ERPGHFAGXVLISPLVLANPESATTFKVLAAKVLNLVLPNLSLGPIDSSV 200
>pdb|1BH8|A Chain A, Htafii18HTAFII28 HETERODIMER CRYSTAL STRUCTURE
pdb|1BH9|A Chain A, Htafii18HTAFII28 HETERODIMER CRYSTAL STRUCTURE WITH BOUND
Pcmbs
Length = 45
Score = 30.0 bits (66), Expect = 1.8, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 214 STEEKNFLWGFGDKAQPWASELAYSVDLWQDQVCYFIKEVIREPVYV 260
S E + ++GFGD P+ SVD+ +D V FI E+ + + +
Sbjct: 3 SKELRCMMYGFGDDQNPYTE----SVDILEDLVIEFITEMTHKAMSI 45
>pdb|3G9X|A Chain A, Structure Of Haloalkane Dehalogenase Dhaa14 Mutant I135f
From Rhodococcus Rhodochrous
Length = 299
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 54/146 (36%), Gaps = 39/146 (26%)
Query: 146 NVHYEKAGCENVNSPPVLFLPGFGVGSFHYEKQLKDLGKDYRAWAIDFLGQGMSLPDEDP 205
+HY G + PVLFL G S+ + + + +R A D +G G S
Sbjct: 21 RMHYVDVGPRD--GTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKS------ 72
Query: 206 TPRSKEGDSTEEKNFLWGFGDKAQPWASELAYSVDLWQDQVCY---FIKEVIREPVYVVG 262
DK +L Y D D V Y FI+ + E V +V
Sbjct: 73 --------------------DK-----PDLDYFFD---DHVRYLDAFIEALGLEEVVLVI 104
Query: 263 NSLGGFVAVYFAACNPHLVKGVTLLN 288
+ G + ++A NP VKG+ +
Sbjct: 105 HDWGSALGFHWAKRNPERVKGIACME 130
>pdb|1BN6|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
pdb|1BN7|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
Length = 294
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 54/146 (36%), Gaps = 39/146 (26%)
Query: 146 NVHYEKAGCENVNSPPVLFLPGFGVGSFHYEKQLKDLGKDYRAWAIDFLGQGMSLPDEDP 205
+HY G + PVLFL G S+ + + + +R A D +G G S
Sbjct: 21 RMHYVDVGPRD--GTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKS------ 72
Query: 206 TPRSKEGDSTEEKNFLWGFGDKAQPWASELAYSVDLWQDQVCY---FIKEVIREPVYVVG 262
DK +L Y D D V Y FI+ + E V +V
Sbjct: 73 --------------------DK-----PDLDYFFD---DHVRYLDAFIEALGLEEVVLVI 104
Query: 263 NSLGGFVAVYFAACNPHLVKGVTLLN 288
+ G + ++A NP VKG+ +
Sbjct: 105 HDWGSALGFHWAKRNPERVKGIACME 130
>pdb|3RK4|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31
pdb|3RLT|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 299
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 54/146 (36%), Gaps = 39/146 (26%)
Query: 146 NVHYEKAGCENVNSPPVLFLPGFGVGSFHYEKQLKDLGKDYRAWAIDFLGQGMSLPDEDP 205
+HY G + PVLFL G S+ + + + +R A D +G G S
Sbjct: 21 RMHYVDVGPRD--GTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKS------ 72
Query: 206 TPRSKEGDSTEEKNFLWGFGDKAQPWASELAYSVDLWQDQVCY---FIKEVIREPVYVVG 262
DK +L Y D D V Y FI+ + E V +V
Sbjct: 73 --------------------DK-----PDLDYFFD---DHVRYLDAFIEALGLEEVVLVI 104
Query: 263 NSLGGFVAVYFAACNPHLVKGVTLLN 288
+ G + ++A NP VKG+ +
Sbjct: 105 HDWGSALGFHWAKRNPERVKGIACME 130
>pdb|3FWH|A Chain A, Structure Of Haloalkane Dehalogenase Mutant Dha15
(I135fC176Y) FROM Rhodococcus Rhodochrous
Length = 299
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 54/146 (36%), Gaps = 39/146 (26%)
Query: 146 NVHYEKAGCENVNSPPVLFLPGFGVGSFHYEKQLKDLGKDYRAWAIDFLGQGMSLPDEDP 205
+HY G + PVLFL G S+ + + + +R A D +G G S
Sbjct: 21 RMHYVDVGPRD--GTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKS------ 72
Query: 206 TPRSKEGDSTEEKNFLWGFGDKAQPWASELAYSVDLWQDQVCY---FIKEVIREPVYVVG 262
DK +L Y D D V Y FI+ + E V +V
Sbjct: 73 --------------------DK-----PDLDYFFD---DHVRYLDAFIEALGLEEVVLVI 104
Query: 263 NSLGGFVAVYFAACNPHLVKGVTLLN 288
+ G + ++A NP VKG+ +
Sbjct: 105 HDWGSALGFHWAKRNPERVKGIACME 130
>pdb|4F60|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (t148l, G171q, A172v, C176f)
Length = 299
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 56/154 (36%), Gaps = 42/154 (27%)
Query: 146 NVHYEKAGCENVNSPPVLFLPGFGVGSFHYEKQLKDLGKDYRAWAIDFLGQGMSLPDEDP 205
+HY G + PVLFL G S+ + + + +R A D +G G S
Sbjct: 21 RMHYVDVGPRD--GTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKS------ 72
Query: 206 TPRSKEGDSTEEKNFLWGFGDKAQPWASELAYSVDLWQDQVCY---FIKEVIREPVYVVG 262
DK +L Y D D V Y FI+ + E V +V
Sbjct: 73 --------------------DK-----PDLDYFFD---DHVRYLDAFIEALGLEEVVLVI 104
Query: 263 NSLGGFVAVYFAACNPHLVKGVT---LLNATPFW 293
+ G + ++A NP VKG+ + P W
Sbjct: 105 HDWGSALGFHWAKRNPERVKGIACMEFIRPIPTW 138
>pdb|4FWB|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 292
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 54/146 (36%), Gaps = 39/146 (26%)
Query: 146 NVHYEKAGCENVNSPPVLFLPGFGVGSFHYEKQLKDLGKDYRAWAIDFLGQGMSLPDEDP 205
+HY G + PVLFL G S+ + + + +R A D +G G S
Sbjct: 18 RMHYVDVGPRD--GTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKS------ 69
Query: 206 TPRSKEGDSTEEKNFLWGFGDKAQPWASELAYSVDLWQDQVCY---FIKEVIREPVYVVG 262
DK +L Y D D V Y FI+ + E V +V
Sbjct: 70 --------------------DK-----PDLDYFFD---DHVRYLDAFIEALGLEEVVLVI 101
Query: 263 NSLGGFVAVYFAACNPHLVKGVTLLN 288
+ G + ++A NP VKG+ +
Sbjct: 102 HDWGSALGFHWAKRNPERVKGIACME 127
>pdb|1CQW|A Chain A, Nai Cocrystallised With Haloalkane Dehalogenase From A
Rhodococcus Species
Length = 295
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 54/146 (36%), Gaps = 39/146 (26%)
Query: 146 NVHYEKAGCENVNSPPVLFLPGFGVGSFHYEKQLKDLGKDYRAWAIDFLGQGMSLPDEDP 205
+HY G + PVLFL G S+ + + + +R A D +G G S
Sbjct: 18 RMHYVDVGPRD--GTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKS------ 69
Query: 206 TPRSKEGDSTEEKNFLWGFGDKAQPWASELAYSVDLWQDQVCY---FIKEVIREPVYVVG 262
DK +L Y D D V Y FI+ + E V +V
Sbjct: 70 --------------------DK-----PDLDYFFD---DHVRYLDAFIEALGLEEVVLVI 101
Query: 263 NSLGGFVAVYFAACNPHLVKGVTLLN 288
+ G + ++A NP VKG+ +
Sbjct: 102 HDWGSALGFHWAKRNPERVKGIACME 127
>pdb|3FBW|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant C176y
Length = 299
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 56/154 (36%), Gaps = 42/154 (27%)
Query: 146 NVHYEKAGCENVNSPPVLFLPGFGVGSFHYEKQLKDLGKDYRAWAIDFLGQGMSLPDEDP 205
+HY G + PVLFL G S+ + + + +R A D +G G S
Sbjct: 21 RMHYVDVGPRD--GTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKS------ 72
Query: 206 TPRSKEGDSTEEKNFLWGFGDKAQPWASELAYSVDLWQDQVCY---FIKEVIREPVYVVG 262
DK +L Y D D V Y FI+ + E V +V
Sbjct: 73 --------------------DK-----PDLDYFFD---DHVRYLDAFIEALGLEEVVLVI 104
Query: 263 NSLGGFVAVYFAACNPHLVKGVT---LLNATPFW 293
+ G + ++A NP VKG+ + P W
Sbjct: 105 HDWGSALGFHWAKRNPERVKGIACMEFIRPIPTW 138
>pdb|3SK0|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant Dhaa12
Length = 311
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 56/154 (36%), Gaps = 42/154 (27%)
Query: 146 NVHYEKAGCENVNSPPVLFLPGFGVGSFHYEKQLKDLGKDYRAWAIDFLGQGMSLPDEDP 205
+HY G + PVLFL G S+ + + + +R A D +G G S
Sbjct: 21 RMHYVDVGPRD--GTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKS------ 72
Query: 206 TPRSKEGDSTEEKNFLWGFGDKAQPWASELAYSVDLWQDQVCY---FIKEVIREPVYVVG 262
DK +L Y D D V Y FI+ + E V +V
Sbjct: 73 --------------------DK-----PDLDYFFD---DHVRYLDAFIEALGLEEVVLVI 104
Query: 263 NSLGGFVAVYFAACNPHLVKGVT---LLNATPFW 293
+ G + ++A NP VKG+ + P W
Sbjct: 105 HDWGSALGFHWAKRNPERVKGIACMEFIRPIPTW 138
>pdb|2V9Z|A Chain A, Structure Of The Rhodococcus Haloalkane Dehalogenase
Mutant With Enhanced Enantioselectivity
Length = 304
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 56/154 (36%), Gaps = 42/154 (27%)
Query: 146 NVHYEKAGCENVNSPPVLFLPGFGVGSFHYEKQLKDLGKDYRAWAIDFLGQGMSLPDEDP 205
+HY G + PVLFL G S+ + + + +R A D +G G S
Sbjct: 21 RMHYVDVGPRD--GTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKS------ 72
Query: 206 TPRSKEGDSTEEKNFLWGFGDKAQPWASELAYSVDLWQDQVCY---FIKEVIREPVYVVG 262
DK +L Y D D V Y FI+ + E V +V
Sbjct: 73 --------------------DK-----PDLDYFFD---DHVRYLDAFIEALGLEEVVLVI 104
Query: 263 NSLGGFVAVYFAACNPHLVKGVT---LLNATPFW 293
+ G + ++A NP VKG+ + P W
Sbjct: 105 HDWGSALGFHWAKRNPERVKGIACMEFIRPIPTW 138
>pdb|2R11|A Chain A, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|B Chain B, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|C Chain C, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|D Chain D, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
Length = 306
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 52/142 (36%), Gaps = 32/142 (22%)
Query: 147 VHYEKAGCENVNSPPVLFLPGFGVGSFHYEKQLKDLGKDYRAWAIDFLGQGMSLPDEDPT 206
H +G E+ +PP++ L G S + + D YR +A+D +G
Sbjct: 57 THVIASGPED--APPLVLLHGALFSSTXWYPNIADWSSKYRTYAVDIIGD-----KNKSI 109
Query: 207 PRSKEGDSTEEKNFLWGFGDKAQPWASELAYSVDLWQDQVCYFIKEVIREPVYVVGNSLG 266
P + G T+ N+L +D++ + E + +G SLG
Sbjct: 110 PENVSGTRTDYANWL-----------------LDVFDNLGI--------EKSHXIGLSLG 144
Query: 267 GFVAVYFAACNPHLVKGVTLLN 288
G F P VK +L+
Sbjct: 145 GLHTXNFLLRXPERVKSAAILS 166
>pdb|2WM2|A Chain A, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a In Complex With Chloride
pdb|2WM2|B Chain B, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a In Complex With Chloride
pdb|2WM2|C Chain C, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a In Complex With Chloride
pdb|2WM2|D Chain D, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a In Complex With Chloride
Length = 279
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 156 NVNSPPVLFLPGFGVGSFHYEKQLKDLGKDYRAWAIDFLGQGMSLPDEDP 205
+ + P +L LPG+ Y+ +++L D+R ++ G G+S P E P
Sbjct: 27 DTDGPAILLLPGWCHDHRVYKYLIQELDADFRVIVPNWRGHGLS-PSEVP 75
>pdb|2WJ3|A Chain A, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a
pdb|2WJ3|B Chain B, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a
pdb|2WJ3|C Chain C, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a
pdb|2WJ3|D Chain D, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a
pdb|2WJ4|A Chain A, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Anaerobically Complexed With Its
Natural Substrate 1-H-3-Hydroxy-4-Oxoquinaldine
pdb|2WJ4|B Chain B, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Anaerobically Complexed With Its
Natural Substrate 1-H-3-Hydroxy-4-Oxoquinaldine
pdb|2WJ4|C Chain C, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Anaerobically Complexed With Its
Natural Substrate 1-H-3-Hydroxy-4-Oxoquinaldine
pdb|2WJ4|D Chain D, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Anaerobically Complexed With Its
Natural Substrate 1-H-3-Hydroxy-4-Oxoquinaldine
pdb|2WJ6|A Chain A, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Complexed With Its Natural
Product N-Acetylanthranilate
pdb|2WJ6|B Chain B, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Complexed With Its Natural
Product N-Acetylanthranilate
pdb|2WJ6|C Chain C, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Complexed With Its Natural
Product N-Acetylanthranilate
pdb|2WJ6|D Chain D, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Complexed With Its Natural
Product N-Acetylanthranilate
Length = 276
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 156 NVNSPPVLFLPGFGVGSFHYEKQLKDLGKDYRAWAIDFLGQGMSLPDEDP 205
+ + P +L LPG+ Y+ +++L D+R ++ G G+S P E P
Sbjct: 24 DTDGPAILLLPGWCHDHRVYKYLIQELDADFRVIVPNWRGHGLS-PSEVP 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.451
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,670,123
Number of Sequences: 62578
Number of extensions: 540594
Number of successful extensions: 1121
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 1089
Number of HSP's gapped (non-prelim): 67
length of query: 344
length of database: 14,973,337
effective HSP length: 100
effective length of query: 244
effective length of database: 8,715,537
effective search space: 2126591028
effective search space used: 2126591028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)