Query 019207
Match_columns 344
No_of_seqs 129 out of 232
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 12:33:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019207.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019207hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lbw_A M2 protein; proton chan 31.6 30 0.001 20.7 2.1 14 256-269 6-19 (23)
2 3bkd_A Transmembrane domain of 30.2 32 0.0011 21.1 2.1 13 257-269 10-22 (26)
3 3ux4_A Acid-activated UREA cha 19.7 2.6E+02 0.0088 25.0 6.9 29 195-223 73-104 (195)
4 2kih_A Matrix protein 2; S31N, 16.2 1E+02 0.0036 20.8 2.6 17 255-271 12-28 (43)
5 2ljb_A M2 protein, BM2 protein 13.9 1.4E+02 0.0046 19.6 2.6 14 256-269 13-26 (35)
6 2l2r_A Antimicrobial peptide e 10.6 1.4E+02 0.0048 19.6 1.9 16 28-43 17-32 (37)
7 2plx_B Peptide inhibitor; heli 9.9 1E+02 0.0034 18.6 0.9 11 32-42 16-26 (26)
8 1mqs_B SED5P, integral membran 9.7 1.1E+02 0.0036 21.7 1.1 21 24-44 6-26 (50)
9 2cmy_B Beta trypsin, veronica 8.6 1.1E+02 0.0038 19.5 0.8 13 31-43 20-32 (34)
10 1pjv_A Cobatoxin 1, COTX1, GTI 7.2 1.4E+02 0.0047 19.1 0.8 17 33-49 5-21 (32)
No 1
>3lbw_A M2 protein; proton channel, M2TM, HOST CEL membrane, hydrogen ION transport, ionic channel, transmembr virion, transport protein; HET: XYL; 1.65A {Influenza a virus}
Probab=31.64 E-value=30 Score=20.66 Aligned_cols=14 Identities=21% Similarity=0.769 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHH
Q 019207 256 CVVMAVAQLLIWAT 269 (344)
Q Consensus 256 nv~~G~~~~~lW~~ 269 (344)
--++|+++.++|+.
T Consensus 6 a~iigIlHLiLwIl 19 (23)
T 3lbw_A 6 ASIIAILHLILWIL 19 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34689999999985
No 2
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=30.23 E-value=32 Score=21.07 Aligned_cols=13 Identities=23% Similarity=0.813 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHH
Q 019207 257 VVMAVAQLLIWAT 269 (344)
Q Consensus 257 v~~G~~~~~lW~~ 269 (344)
-++|+++.++|++
T Consensus 10 ~iiGilHLiLwIl 22 (26)
T 3bkd_A 10 SIMGILHLILWIL 22 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3689999999985
No 3
>3ux4_A Acid-activated UREA channel; transport protein; HET: XP4; 3.26A {Helicobacter pylori}
Probab=19.74 E-value=2.6e+02 Score=24.99 Aligned_cols=29 Identities=21% Similarity=0.178 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHH---HHHHHHHhcccchhHH
Q 019207 195 FDYSSAVALLGFS---LILAILRSFNVRDEAA 223 (344)
Q Consensus 195 LDYf~A~a~vl~~---l~~~~~R~f~l~~~~~ 223 (344)
.||++|....+|+ +|+++-|.++++.+..
T Consensus 73 ~~~ya~a~~lLFgFTYL~Vain~~~~lD~rgl 104 (195)
T 3ux4_A 73 TSFYGPATGLLFGFTYLYAAINHTFGLDWRPY 104 (195)
T ss_dssp -CTHHHHHHHHHHHHHHHHHHHHHHTCCHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCCCCcch
Confidence 6788887778888 4668889999987643
No 4
>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A* 2l0j_A 2kwx_A
Probab=16.19 E-value=1e+02 Score=20.83 Aligned_cols=17 Identities=12% Similarity=0.462 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHHH
Q 019207 255 VCVVMAVAQLLIWATWA 271 (344)
Q Consensus 255 ~nv~~G~~~~~lW~~~~ 271 (344)
+--++|+++.++|++=-
T Consensus 12 aa~iiGIlHLiLwildR 28 (43)
T 2kih_A 12 AANIIGILHLILWILDR 28 (43)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33468999999998643
No 5
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=13.95 E-value=1.4e+02 Score=19.57 Aligned_cols=14 Identities=7% Similarity=0.641 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHH
Q 019207 256 CVVMAVAQLLIWAT 269 (344)
Q Consensus 256 nv~~G~~~~~lW~~ 269 (344)
--++|+++.++|++
T Consensus 13 A~IigiLHlilWil 26 (35)
T 2ljb_A 13 ASIIGILHFIAWTI 26 (35)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 34689999999985
No 6
>2l2r_A Antimicrobial peptide ecamp1; disulfide-stabilized helical hairpin, antifungal peptide, antimicrobial protein; NMR {Echinochloa crus-galli}
Probab=10.60 E-value=1.4e+02 Score=19.59 Aligned_cols=16 Identities=31% Similarity=0.563 Sum_probs=13.1
Q ss_pred CCchhHHHHHHHhhhc
Q 019207 28 DADPLYRACVKQCEET 43 (344)
Q Consensus 28 D~~p~f~~Cv~~C~~~ 43 (344)
|.--+-|+|+.+|+..
T Consensus 17 dePWr~QECm~qCrrR 32 (37)
T 2l2r_A 17 DEPWRVQECVSQCRRR 32 (37)
T ss_dssp SCGGGHHHHHHHHHSC
T ss_pred CCccHHHHHHHHHHHh
Confidence 6667789999999854
No 7
>2plx_B Peptide inhibitor; helix-turn-helix, hydrolase; HET: FLC; 1.56A {Bos taurus}
Probab=9.92 E-value=1e+02 Score=18.59 Aligned_cols=11 Identities=45% Similarity=1.177 Sum_probs=8.6
Q ss_pred hHHHHHHHhhh
Q 019207 32 LYRACVKQCEE 42 (344)
Q Consensus 32 ~f~~Cv~~C~~ 42 (344)
.-+.|++.||+
T Consensus 16 llrrcldncek 26 (26)
T 2plx_B 16 LLRRCLDNCEK 26 (26)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHhcccC
Confidence 46889999973
No 8
>1mqs_B SED5P, integral membrane protein SED5; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae}
Probab=9.71 E-value=1.1e+02 Score=21.73 Aligned_cols=21 Identities=10% Similarity=0.162 Sum_probs=17.6
Q ss_pred CCCCCCchhHHHHHHHhhhcC
Q 019207 24 ASAGDADPLYRACVKQCEETG 44 (344)
Q Consensus 24 AS~GD~~p~f~~Cv~~C~~~~ 44 (344)
.|.=||..||+.|++.=++..
T Consensus 6 ~SiqDRT~EF~siv~~lqkr~ 26 (50)
T 1mqs_B 6 MNIKDRTSEFQQSVLSYKKRN 26 (50)
T ss_dssp HHHHBCHHHHHHHHHHHHHHC
T ss_pred ccccccCHHHHHHHHHHHhcc
Confidence 456799999999999988654
No 9
>2cmy_B Beta trypsin, veronica hederifolia trypsin inhibitor; acyl-enzyme intermediate, serine protease inhibitor, zymogen protease, digestion; 2.25A {Veronica hederifolia} SCOP: g.2.4.1
Probab=8.64 E-value=1.1e+02 Score=19.45 Aligned_cols=13 Identities=38% Similarity=0.981 Sum_probs=8.0
Q ss_pred hhHHHHHHHhhhc
Q 019207 31 PLYRACVKQCEET 43 (344)
Q Consensus 31 p~f~~Cv~~C~~~ 43 (344)
..-+.|++.||++
T Consensus 20 ellrrcldnceke 32 (34)
T 2cmy_B 20 ELLRRCLDNCEKE 32 (34)
T ss_dssp HHHHHHHHHC---
T ss_pred HHHHHHHHhhhhc
Confidence 3468899999864
No 10
>1pjv_A Cobatoxin 1, COTX1, GTIX; scorpion toxin, centuroides noxius, K+ channel, chemical synthesis, 3-D structure, 1H-spectroscopy, circular dichroism; NMR {Synthetic} SCOP: g.3.7.2
Probab=7.24 E-value=1.4e+02 Score=19.07 Aligned_cols=17 Identities=41% Similarity=0.890 Sum_probs=13.3
Q ss_pred HHHHHHHhhhcCCCCCC
Q 019207 33 YRACVKQCEETGCVGQK 49 (344)
Q Consensus 33 f~~Cv~~C~~~~C~~~~ 49 (344)
.++|...|.+.++..++
T Consensus 5 s~~C~~~Cr~~G~~~GK 21 (32)
T 1pjv_A 5 YRTCDKDCKRRGYRSGK 21 (32)
T ss_dssp HHHHHHHHHTTTSSEEE
T ss_pred chhHhHHHHhcCCCCce
Confidence 46899999877877655
Done!