Query 019208
Match_columns 344
No_of_seqs 20 out of 22
Neff 2.1
Searched_HMMs 13730
Date Mon Mar 25 12:33:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019208.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019208hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1seta1 a.2.7.1 (A:1-110) Sery 58.4 26 0.0019 25.1 8.1 40 305-344 65-104 (110)
2 d1de4c1 a.48.2.1 (C:609-756) T 50.6 17 0.0012 28.3 6.3 61 102-167 76-138 (148)
3 d1oaoc_ e.26.1.3 (C:) Bifuncti 36.1 4.9 0.00036 39.6 1.0 25 83-107 585-617 (729)
4 d1seta1 a.2.7.1 (A:1-110) Sery 30.0 86 0.0063 22.1 8.2 75 15-93 29-109 (110)
5 d2p90a1 c.56.8.1 (A:6-274) Hyp 29.7 16 0.0012 29.7 3.1 53 279-332 214-266 (269)
6 d3bi1a1 a.48.2.1 (A:594-750) G 27.6 20 0.0014 27.0 3.1 66 102-167 81-150 (157)
7 d1i5pa3 f.1.3.1 (A:1-263) delt 19.1 1.3E+02 0.0092 24.9 6.8 69 214-290 85-162 (263)
8 d1q7ha1 b.122.1.1 (A:69-153) H 17.6 14 0.001 25.8 0.3 38 74-112 13-50 (85)
9 d1yvia1 a.24.10.2 (A:2-143) Hi 17.6 1.3E+02 0.0096 21.9 6.0 32 248-279 110-141 (142)
10 d1oe8a1 a.45.1.1 (A:85-207) Cl 17.4 39 0.0029 23.6 2.7 24 57-80 99-123 (123)
No 1
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=58.36 E-value=26 Score=25.11 Aligned_cols=40 Identities=15% Similarity=0.130 Sum_probs=36.3
Q ss_pred HHHHHHHhhhhhhhhcchhHHHHHHHHhhhhhhhccCCCC
Q 019208 305 EVQKLMEENVRLTALLDKKEAQLLAMNEQCKVMALNASNI 344 (344)
Q Consensus 305 EVQKlMeENvrL~allDkKEAqL~AmnEQcK~mAl~~sn~ 344 (344)
+.+.++++--.|..-+...|+++..+.++..-++++-|||
T Consensus 65 ~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ll~iPNi 104 (110)
T d1seta1 65 EKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLP 104 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4567888888899999999999999999999999999996
No 2
>d1de4c1 a.48.2.1 (C:609-756) Transferrin receptor ectodomain, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=50.57 E-value=17 Score=28.34 Aligned_cols=61 Identities=11% Similarity=0.060 Sum_probs=42.8
Q ss_pred ccccCCCCCCCCCCcCCCCCCCCCCCcchhhhhhhc--cCCCcccchhhHHHHHHHHHHHHHHHHHHH
Q 019208 102 GLVDKNGTPLSGWSRNVDLSSFNGPDEDTWIGISKQ--LGSSDEQDGAYIGELLKSVQMVTDVMEVLV 167 (344)
Q Consensus 102 G~VDk~G~pls~Wsk~~d~ss~~~~d~~~~~~~~~~--~g~~~~~d~~Yv~e~LksV~mVtdvMEsLv 167 (344)
+|+|.+|.|=-.|-|++=. +|+..+.+|+... .+..+. .......+-+.+..||-.+.+-.
T Consensus 76 ~fl~~~glp~r~~~rHvi~----~p~~~~fPgi~dai~~~~~~~-~~~~~~~v~~qls~~t~~i~~Aa 138 (148)
T d1de4c1 76 HFLSPYVSPKESPFRHVFW----GSGSHTLPALLENLKLRKQNN-GAFNETLFRNQLALATWTIQGAA 138 (148)
T ss_dssp TTBCTTSCTTTCCCCBTTT----SCSTTSHHHHHHHHHHTSSCS-SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCccCCCCCCccceeee----CCCCCCCccHHHHHHhccccc-chhhHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999855 6676778887762 122111 12346677788888888777654
No 3
>d1oaoc_ e.26.1.3 (C:) Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS) subunit {Moorella thermoacetica [TaxId: 1525]}
Probab=36.08 E-value=4.9 Score=39.55 Aligned_cols=25 Identities=20% Similarity=0.510 Sum_probs=20.9
Q ss_pred cccCCccccccc--------cccccccccccCC
Q 019208 83 MAVPDLAHTSCG--------IRQLEGVGLVDKN 107 (344)
Q Consensus 83 MAvP~LAhtScG--------IkqlegVG~VDk~ 107 (344)
-.+=+.+||||| |-..+|+|.|+++
T Consensus 585 yS~~~~PmTSCGCFE~I~~~iPe~nGi~iV~Re 617 (729)
T d1oaoc_ 585 YTLMENPMTSCGCFEAIMAILPECNGIMITTRD 617 (729)
T ss_dssp TCSSSSCCCCCSCCSEEEEEEGGGTEEEEEETT
T ss_pred EEecCCCCcCchhhhhhhhhcccCceEEEEecC
Confidence 345567899999 6789999999997
No 4
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=30.04 E-value=86 Score=22.13 Aligned_cols=75 Identities=13% Similarity=0.122 Sum_probs=38.9
Q ss_pred hhhhhhHHHHHHHHhhhhhHHHHHHHHHhhhhhh-hcChHH---HHHHHHHHHHHHHhHHHHHHHHhhh--hcccccCCc
Q 019208 15 QIIETHEIWKQEMERSQFQVDVLQEKLMEVKTCI-KDSEED---AKKELEVLWRRVKTTATLLTYLKSK--ARIMAVPDL 88 (344)
Q Consensus 15 ~~~~~~~~Wk~eme~~qSQVdvLq~rl~evKa~i-~gSeed---a~KELevL~rRVKT~atLLtYLKSK--ARiMAvP~L 88 (344)
.+..-+..|++ .+.+++.|+.+-..+=..| .+..++ ..++...|-..++....-+.=+.++ .-.+.||-+
T Consensus 29 ~i~~ld~~rr~----l~~~~e~l~~~rN~~sk~i~k~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ll~iPNi 104 (110)
T d1seta1 29 ALLALDREVQE----LKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLP 104 (110)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 44455556654 4566777777765543333 233222 2233334444444443333333332 346789999
Q ss_pred ccccc
Q 019208 89 AHTSC 93 (344)
Q Consensus 89 AhtSc 93 (344)
.|.||
T Consensus 105 ~~~~V 109 (110)
T d1seta1 105 PWPGA 109 (110)
T ss_dssp CCTTS
T ss_pred CCccC
Confidence 99885
No 5
>d2p90a1 c.56.8.1 (A:6-274) Hypothetical protein Cgl1923 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=29.68 E-value=16 Score=29.70 Aligned_cols=53 Identities=19% Similarity=0.154 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhhhhcchhhhhhhHHHHHHHHHhhhhhhhhcchhHHHHHHHHh
Q 019208 279 QTIERLFERLVAKTTQLEGEKMQKEAEVQKLMEENVRLTALLDKKEAQLLAMNE 332 (344)
Q Consensus 279 qtiE~lferLvakt~qLE~eK~qKEaEVQKlMeENvrL~allDkKEAqL~AmnE 332 (344)
+.+++++. |---+..|+.+..+-|++++++|++|--+..++.+-|-|--|.-|
T Consensus 214 ~~l~~~~g-l~id~~~L~e~Ae~~e~~i~~l~e~~~e~~~~v~~LE~~yD~~~~ 266 (269)
T d2p90a1 214 QSIADSAD-LNLPLLALERDAEKVHRQLMEQTEESSEIQRVVGALEQQYDSELE 266 (269)
T ss_dssp HHHHHHHT-CCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHC-CCCChHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhHhhhhh
Confidence 34555554 445678888899999999999999999999999988888766543
No 6
>d3bi1a1 a.48.2.1 (A:594-750) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.63 E-value=20 Score=27.03 Aligned_cols=66 Identities=17% Similarity=0.194 Sum_probs=38.1
Q ss_pred ccccCCCCCCCCCCcCCCCCC--CCCCCcchhhhhhhc--cCCCcccchhhHHHHHHHHHHHHHHHHHHH
Q 019208 102 GLVDKNGTPLSGWSRNVDLSS--FNGPDEDTWIGISKQ--LGSSDEQDGAYIGELLKSVQMVTDVMEVLV 167 (344)
Q Consensus 102 G~VDk~G~pls~Wsk~~d~ss--~~~~d~~~~~~~~~~--~g~~~~~d~~Yv~e~LksV~mVtdvMEsLv 167 (344)
+|+|..|.|=-.|-|++=.++ ++|-+..+.+|+..- ++..+..+..=-.+.-+.|..|+..+++..
T Consensus 81 ~Fl~~~GlpgR~~~kHvi~aP~~~~~y~~~~FPgi~dAi~~~~~~~~~~~~w~~~~~qi~~~~~~i~~Aa 150 (157)
T d3bi1a1 81 AFIDPLGLPDRPFYRHVIYAPSSHNKYAGESFPGIYDALFDIESKVDPSKAWGEVKRQIYVAAFTVQAAA 150 (157)
T ss_dssp TTBCTTCBTTBTTCCBSSEEEETTEEEEEEESHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCccCCCCCCccceeeeCCCCCCCcccccchhHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999986632 112223455665542 111111111113456667777787777654
No 7
>d1i5pa3 f.1.3.1 (A:1-263) delta-Endotoxin (insectocide), N-terminal domain {Bacillus thuringiensis subsp. kurstaki, CRY2AA [TaxId: 29339]}
Probab=19.06 E-value=1.3e+02 Score=24.93 Aligned_cols=69 Identities=16% Similarity=0.364 Sum_probs=43.7
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHhHHHHHHHHHh---------hhhHHHHHHHHH
Q 019208 214 GTNGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISVRETLL---------SSEKQFQTIERL 284 (344)
Q Consensus 214 gTn~iLneMrqrvedlv~EtsrqrqraaenE~elsrvk~dfesLksyvssli~vreTll---------ssekqfqtiE~l 284 (344)
+++.+-+++...||.|+.+.-- +.-..++..+++.|+..+..+..+-+.-. .--.+|.+++..
T Consensus 85 ~~~~~w~~~~~~vE~LIdqki~--------~~~~~~a~~~l~gL~~~l~~Y~~al~~w~~~~n~~~~~~v~~~f~~l~~~ 156 (263)
T d1i5pa3 85 GSTNLMQDILRETEQFLNQRLN--------TDTLARVNAELIGLQANIREFNQQVDNFLNPTQNPVPLSITSSVNTMQQL 156 (263)
T ss_dssp GCCHHHHHHHHHHHHHHTCCCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSSCCCSHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHH
Confidence 4455788888889988865432 23335556667776666666655544321 235689999988
Q ss_pred HHHHHh
Q 019208 285 FERLVA 290 (344)
Q Consensus 285 ferLva 290 (344)
|.+-..
T Consensus 157 f~~~ip 162 (263)
T d1i5pa3 157 FLNRLP 162 (263)
T ss_dssp HHHHGG
T ss_pred HHHHHH
Confidence 876544
No 8
>d1q7ha1 b.122.1.1 (A:69-153) Hypothetical protein Ta1423, C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=17.64 E-value=14 Score=25.78 Aligned_cols=38 Identities=11% Similarity=0.181 Sum_probs=30.8
Q ss_pred HHHhhhhcccccCCccccccccccccccccccCCCCCCC
Q 019208 74 TYLKSKARIMAVPDLAHTSCGIRQLEGVGLVDKNGTPLS 112 (344)
Q Consensus 74 tYLKSKARiMAvP~LAhtScGIkqlegVG~VDk~G~pls 112 (344)
.||...|-+| .|++-...+.++.=+-|.++|.+|.|++
T Consensus 13 ~~l~~GA~L~-~pGV~~~~~~~~~gd~V~I~~~~g~~ia 50 (85)
T d1q7ha1 13 PHILNGSDLF-APGIVSMDDSIRKGDMIFVKSSKGYFIA 50 (85)
T ss_dssp HHHTTTCCEE-GGGEEEECTTCCTTCEEEEEETTSCEEE
T ss_pred HHHHCCCCcC-CCccEECCCCCCCCCEEEEEeCCCCEEE
Confidence 5677666655 5888888889999999999999999875
No 9
>d1yvia1 a.24.10.2 (A:2-143) Histidine-containing phosphotransfer protein HP1 {Rice (Oryza sativa) [TaxId: 4530]}
Probab=17.59 E-value=1.3e+02 Score=21.89 Aligned_cols=32 Identities=22% Similarity=0.159 Sum_probs=21.4
Q ss_pred HHHHhhHHHHHHHHhHHHHHHHHHhhhhHHHH
Q 019208 248 CRVKRDFESLKNYVSSLISVRETLLSSEKQFQ 279 (344)
Q Consensus 248 srvk~dfesLksyvssli~vreTllssekqfq 279 (344)
..+..-|..|+..+..+...-++++..|||.+
T Consensus 110 ~~~~~~~~~L~~e~~~l~~~L~~~l~~~~qi~ 141 (142)
T d1yvia1 110 DGCLMALAVVRNDFYDLRNKFQTMLQLEQQIQ 141 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 34555666666666666666677788888864
No 10
>d1oe8a1 a.45.1.1 (A:85-207) Class alpha GST {Blood fluke (Schistosoma haematobium) [TaxId: 6185]}
Probab=17.40 E-value=39 Score=23.62 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=21.2
Q ss_pred HHHHHHHHHH-HhHHHHHHHHhhhh
Q 019208 57 KELEVLWRRV-KTTATLLTYLKSKA 80 (344)
Q Consensus 57 KELevL~rRV-KT~atLLtYLKSKA 80 (344)
-.|..++.|| ++.-.+=.||+|||
T Consensus 99 P~L~~~~~~v~~~~P~I~~yl~sRa 123 (123)
T d1oe8a1 99 PEIHKHRENLLASSPRLAKYLSDRA 123 (123)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHcChHHHHHHHccC
Confidence 5789999997 88889999999997
Done!