BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019210
         (344 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3KVN|X Chain X, Crystal Structure Of The Full-Length Autotransporter Esta
           From Pseudomonas Aeruginosa
 pdb|3KVN|A Chain A, Crystal Structure Of The Full-Length Autotransporter Esta
           From Pseudomonas Aeruginosa
          Length = 632

 Score = 28.9 bits (63), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 57/253 (22%), Positives = 95/253 (37%), Gaps = 61/253 (24%)

Query: 44  SAVIVFGDSIVDTGNNNNLKTPAKCNFPPYGRDFEGGAATGRFSN--------------G 89
           S ++VFGDS+ D G   +   PA               +T RF+N              G
Sbjct: 16  STLVVFGDSLSDAGQFPDPAGPA--------------GSTSRFTNRVGPTYQNGSGEIFG 61

Query: 90  KVPSDILAEELGVKELSPAYLDPTLKP----EDLLTGVNFASGGCG----YDPLTTRXXX 141
                +L  +LG+   +P  L  +  P    + +  G N+A GG      YD +T     
Sbjct: 62  PTAPMLLGNQLGI---APGDLAASTSPVNAQQGIADGNNWAVGGYRTDQIYDSITAANGS 118

Query: 142 XXXXXXDQLQLFKEY-IDKLRAIVGEEGKNRIFETSFFLVVVGSNDINNNYFGSRIRRLQ 200
                   L+    Y +D+ R  +G +        + + +  G ND       + ++  Q
Sbjct: 119 LIERDNTLLRSRDGYLVDRARQGLGAD------PNALYYITGGGNDFLQGRILNDVQAQQ 172

Query: 201 YDISTYTDLLVGHASTFLKEIYGLGARRIGVFGAPTLGCLPSTRTVAGGIKRDCAKEYNE 260
                      G     ++ +   GAR I V+  P LG  P+T    GG  +  A + + 
Sbjct: 173 ---------AAGRLVDSVQALQQAGARYIVVWLLPDLGLTPAT---FGGPLQPFASQLSG 220

Query: 261 AAQLFNSKLSAEL 273
               FN++L+A+L
Sbjct: 221 T---FNAELTAQL 230


>pdb|2NW0|A Chain A, Crystal Structure Of A Lysin
 pdb|2NW0|B Chain B, Crystal Structure Of A Lysin
          Length = 189

 Score = 28.9 bits (63), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 10/47 (21%)

Query: 202 DISTYTDLLVGHASTFLKEIYGLGARRIGV---------FGAPTLGC 239
           +++T +D+  G    F+ E+Y LGA+++G+         FGA  + C
Sbjct: 91  EVTTMSDMRAG-TQAFIDELYRLGAKKVGLYVGHHKYEEFGAAQIKC 136


>pdb|2M2E|A Chain A, Solution Nmr Structure Of The Sant Domain Of Human Dnajc2,
           Northeast Structural Genomics Consortium Target Hr8254a
          Length = 73

 Score = 28.5 bits (62), Expect = 5.0,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 246 VAGGIKRDCAKEYNEAAQLFNSKLSAELDSLN 277
           V G  K+DC K Y E  ++  +K +A+   LN
Sbjct: 36  VPGRTKKDCMKRYKELVEMVKAKKAAQEQVLN 67


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.142    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,687,125
Number of Sequences: 62578
Number of extensions: 408568
Number of successful extensions: 760
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 758
Number of HSP's gapped (non-prelim): 4
length of query: 344
length of database: 14,973,337
effective HSP length: 100
effective length of query: 244
effective length of database: 8,715,537
effective search space: 2126591028
effective search space used: 2126591028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)