BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019211
(344 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 150 bits (380), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 99/299 (33%), Positives = 150/299 (50%), Gaps = 30/299 (10%)
Query: 27 EIPVIDL----STDPK---QLVLEVGHACQKWGFFQVINHGAPSELKARIEKAAKEFFDQ 79
++P IDL S D K + E+ A WG +INHG P++L R++KA +EFF
Sbjct: 46 QVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSL 105
Query: 80 PIEEKQKVKRDE----VHPMGYHDQEHTKNVRDWKEVFDFWLQDPTFLPASPEPDDKELR 135
+EEK+K D+ + G + +W++ F F A PE +
Sbjct: 106 SVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYF--------FHLAYPEE-----K 152
Query: 136 RLTNQWPEFPLGFRELCEDYAREVEKXXXXXXXXXXXXXXXXADRLQ---GYFKEQTTFL 192
R + WP+ P + E +YA+ + DRL+ G +E +
Sbjct: 153 RDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQM 212
Query: 193 RFNYYPPCPYPELALGVGPHKDGGALTVLAQDDVGGLQVRGKSDGEWIPVKPIPDAYIIN 252
+ NYYP CP PELALGV H D ALT + + V GLQ+ +G+W+ K +PD+ +++
Sbjct: 213 KINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLF--YEGKWVTAKCVPDSIVMH 270
Query: 253 IGDATQVWSNDKYESPEHRVVVNTEKERFSIPFFFF-PAHHAMLKPFDEIVNEQNPARY 310
IGD ++ SN KY+S HR +VN EK R S F P +LKP E+V+ ++PA++
Sbjct: 271 IGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKF 329
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 150 bits (380), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 99/299 (33%), Positives = 150/299 (50%), Gaps = 30/299 (10%)
Query: 27 EIPVIDL----STDPK---QLVLEVGHACQKWGFFQVINHGAPSELKARIEKAAKEFFDQ 79
++P IDL S D K + E+ A WG +INHG P++L R++KA +EFF
Sbjct: 45 QVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSL 104
Query: 80 PIEEKQKVKRDE----VHPMGYHDQEHTKNVRDWKEVFDFWLQDPTFLPASPEPDDKELR 135
+EEK+K D+ + G + +W++ F F A PE +
Sbjct: 105 SVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYF--------FHLAYPEE-----K 151
Query: 136 RLTNQWPEFPLGFRELCEDYAREVEKXXXXXXXXXXXXXXXXADRLQ---GYFKEQTTFL 192
R + WP+ P + E +YA+ + DRL+ G +E +
Sbjct: 152 RDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQM 211
Query: 193 RFNYYPPCPYPELALGVGPHKDGGALTVLAQDDVGGLQVRGKSDGEWIPVKPIPDAYIIN 252
+ NYYP CP PELALGV H D ALT + + V GLQ+ +G+W+ K +PD+ +++
Sbjct: 212 KINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLF--YEGKWVTAKCVPDSIVMH 269
Query: 253 IGDATQVWSNDKYESPEHRVVVNTEKERFSIPFFFF-PAHHAMLKPFDEIVNEQNPARY 310
IGD ++ SN KY+S HR +VN EK R S F P +LKP E+V+ ++PA++
Sbjct: 270 IGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKF 328
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 99/299 (33%), Positives = 147/299 (49%), Gaps = 30/299 (10%)
Query: 27 EIPVIDL----STDPK---QLVLEVGHACQKWGFFQVINHGAPSELKARIEKAAKEFFDQ 79
++P IDL S D K + E+ A WG +INHG P++L R++KA +EFF
Sbjct: 46 QVPTIDLKNIESDDEKIRENCIEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSL 105
Query: 80 PIEEKQKVKRDE----VHPMGYHDQEHTKNVRDWKEVFDFWLQDPTFLPASPEPDDKELR 135
+EEK+K D+ + G + +W++ F F A PE +
Sbjct: 106 SVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYF--------FHLAYPEE-----K 152
Query: 136 RLTNQWPEFPLGFRELCEDYAREVEKXXXXXXXXXXXXXXXXADRLQ---GYFKEQTTFL 192
R + WP+ P + E +YA+ + DRL+ G +E
Sbjct: 153 RDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQX 212
Query: 193 RFNYYPPCPYPELALGVGPHKDGGALTVLAQDDVGGLQVRGKSDGEWIPVKPIPDAYIIN 252
+ NYYP CP PELALGV H D ALT + + V GLQ+ +G+W+ K +PD+ + +
Sbjct: 213 KINYYPKCPQPELALGVEAHTDVSALTFILHNXVPGLQLF--YEGKWVTAKCVPDSIVXH 270
Query: 253 IGDATQVWSNDKYESPEHRVVVNTEKERFSIPFFFF-PAHHAMLKPFDEIVNEQNPARY 310
IGD ++ SN KY+S HR +VN EK R S F P +LKP E V+ ++PA++
Sbjct: 271 IGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEXVSVESPAKF 329
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 118 bits (296), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 81/277 (29%), Positives = 128/277 (46%), Gaps = 27/277 (9%)
Query: 44 VGHACQKWGFFQVINHGAPSELKARIEKAAKEFFDQPIEEKQKVKRDEVHPMGYHDQEHT 103
+ AC+ WGFF+++NHG P E+ +EK K + + E++ K + V +
Sbjct: 24 IKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQRFK---ELVASKALEGVQAE 80
Query: 104 KNVRDWKEVFDFWLQDPTFLPASPEPDDKELRRLTNQWPEFPLGFRELCEDYAREVEKXX 163
DW+ F FL P + E+ P+ +RE+ D+A+ +EK
Sbjct: 81 VTDXDWESTF--------FLKHLPISNISEV-------PDLDEEYREVXRDFAKRLEKLA 125
Query: 164 XXXXXXXXXXXXXXADRLQGYF---KEQTTFLRFNYYPPCPYPELALGVGPHKDGGALTV 220
L+ F K + + YPPCP P+L G+ H D G + +
Sbjct: 126 EELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIIL 185
Query: 221 LAQDD-VGGLQVRGKSDGEWIPVKPIPDAYIINIGDATQVWSNDKYESPEHRVVVNTEKE 279
L QDD V GLQ+ DG+WI V P + ++N+GD +V +N KY+S HRV+ +
Sbjct: 186 LFQDDKVSGLQLL--KDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVIAQKDGA 243
Query: 280 RFSIPFFFFPAHHAMLKPFDEIVN---EQNPARYREF 313
R S+ F+ P A++ P +V E+N Y +F
Sbjct: 244 RXSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKF 280
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 76/288 (26%), Positives = 119/288 (41%), Gaps = 18/288 (6%)
Query: 34 STDPKQLVLEVGHACQKWGFFQVINHGAPSELKARIEKA---AKEFFDQPIEEKQKVKRD 90
+ D + E+G + +++GF + ++ +ARI+ A AK FF P+E K++
Sbjct: 16 AKDFTRFAQELGASFERYGFAVLSDYDLD---QARIDAAVDSAKAFFALPVETKKQYAGV 72
Query: 91 EVHPMGYHD-QEHTKNVRDWKEVFDFWLQDPTFLPASPEPDDKELRRLTNQWPEFPLGFR 149
+ GY T D ++ +FW P N WP F+
Sbjct: 73 KGGARGYIPFGVETAKGADHYDLKEFWHXGRDLPPGH----RFRAHXADNVWPAEIPAFK 128
Query: 150 ELCEDYAREVEKXXXXXXXXXXXXXXXXADRLQGYFKEQTTFLRFNYYPPCPYPELALGV 209
++ D + ++ + LR +YPP P +
Sbjct: 129 HDVSWLYNSLDGXGGKVLEAIATYLKLERDFFKPTVQDGNSVLRLLHYPPIPKDATGVRA 188
Query: 210 GPHKDGGALTVLAQDDVGGLQVRGKSDGEWIPVKPIPDAYIINIGDATQVWSNDKYESPE 269
G H D +T+L + GGL+V + DG+W+P+ P P +INIGD + +N+ S
Sbjct: 189 GAHGDINTITLLLGAEEGGLEVLDR-DGQWLPINPPPGCLVINIGDXLERLTNNVLPSTV 247
Query: 270 HRVVVNTEKE-----RFSIPFFFFPAHHAMLKPFDEIVNEQNPARYRE 312
HR VVN E R+S PFF A +K V +NP RY E
Sbjct: 248 HR-VVNPPPERRGVPRYSTPFFLHFASDYEIKTLQNCVTAENPDRYPE 294
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 78/305 (25%), Positives = 125/305 (40%), Gaps = 48/305 (15%)
Query: 28 IPVIDLS-------TDPKQLVLEVGHACQKWGFFQVINHGAPSELKARIEKAAKEF---- 76
+P ID+S ++ ++ A + GFF +NHG + R+ + KEF
Sbjct: 9 VPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQ---RLSQKTKEFHMSI 65
Query: 77 -----FDQPIEEKQKVKRDEVHPMGYHDQEHTKNVRDWKEVFDFWLQDPTFLPASPEPDD 131
+D I K +D+V GY+ ++ K V F +P F P P
Sbjct: 66 TPEEKWDLAIRAYNKEHQDQVR-AGYY-----LSIPGKKAVESFCYLNPNFTPDHPRIQA 119
Query: 132 KELRRLTNQWPEFPL--GFRELCEDYAREVEKXXXXXXXXXXXXXXXXADRLQGYFKEQT 189
K N WP+ GF++ E Y +V + +FK
Sbjct: 120 KTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDD 179
Query: 190 TF-----LRFNYYPPCPYPELALGVGP---------HKDGGALTVLAQDDVGGLQVRGKS 235
T +R+ Y P YPE A+ H+D +TVL Q +V LQV ++
Sbjct: 180 TLASVVLIRYPYLDP--YPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQV--ET 235
Query: 236 DGEWIPVKPIPDAYIINIGDATQVWSNDKYESPEHRVV-VNTEKERFSIPFFFFPAHHAM 294
+ ++ Y+IN G +N+ Y++P HRV VN E++ S+PFF + ++
Sbjct: 236 AAGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAERQ--SLPFFVNLGYDSV 293
Query: 295 LKPFD 299
+ PFD
Sbjct: 294 IDPFD 298
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 78/305 (25%), Positives = 125/305 (40%), Gaps = 48/305 (15%)
Query: 28 IPVIDLS-------TDPKQLVLEVGHACQKWGFFQVINHGAPSELKARIEKAAKEF---- 76
+P ID+S ++ ++ A + GFF +NHG + R+ + KEF
Sbjct: 9 VPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQ---RLSQKTKEFHMSI 65
Query: 77 -----FDQPIEEKQKVKRDEVHPMGYHDQEHTKNVRDWKEVFDFWLQDPTFLPASPEPDD 131
+D I K +D+V GY+ ++ K V F +P F P P
Sbjct: 66 TPEEKWDLAIRAYNKEHQDQVR-AGYY-----LSIPGKKAVESFCYLNPNFTPDHPRIQA 119
Query: 132 KELRRLTNQWPEFPL--GFRELCEDYAREVEKXXXXXXXXXXXXXXXXADRLQGYFKEQT 189
K N WP+ GF++ E Y +V + +FK
Sbjct: 120 KTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDD 179
Query: 190 TF-----LRFNYYPPCPYPELALGVGP---------HKDGGALTVLAQDDVGGLQVRGKS 235
T +R+ Y P YPE A+ H+D +TVL Q +V LQV ++
Sbjct: 180 TLASVVLIRYPYLDP--YPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQV--ET 235
Query: 236 DGEWIPVKPIPDAYIINIGDATQVWSNDKYESPEHRVV-VNTEKERFSIPFFFFPAHHAM 294
+ ++ Y+IN G +N+ Y++P HRV VN E++ S+PFF + ++
Sbjct: 236 AAGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAERQ--SLPFFVNLGYDSV 293
Query: 295 LKPFD 299
+ PFD
Sbjct: 294 IDPFD 298
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 52/106 (49%), Gaps = 7/106 (6%)
Query: 190 TFLRFNYYPPCPYPE--LALGVGPHKDGGALTVLAQDDVGGLQVRGKSDGEWIPVKPIPD 247
T LR +YPP E A+ H+D +TVL + GLQV+ K DG W+ V
Sbjct: 150 TLLRILHYPPXTGDEEXGAIRAAAHEDINLITVLPTANEPGLQVKAK-DGSWLDVPSDFG 208
Query: 248 AYIINIGDATQVWSNDKYESPEHRVV----VNTEKERFSIPFFFFP 289
IINIGD Q S+ + S HRV+ + K R S+P F P
Sbjct: 209 NIIINIGDXLQEASDGYFPSTSHRVINPEGTDKTKSRISLPLFLHP 254
>pdb|3PM0|A Chain A, Structural Characterization Of The Complex Between Alpha-
Naphthoflavone And Human Cytochrome P450 1b1 (Cyp1b1)
Length = 507
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 228 GLQVRGKSDGEWIPVKPIPDAYIINIGDATQVWSNDKYESPEHRVVVNTEKE 279
L VRG +DG ++ +P+ + N+ A ++ PE R +++ +E
Sbjct: 139 ALLVRGSADGAFLDPRPLTVVAVANVMSAVCFGCRYSHDDPEFRELLSHNEE 190
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,518,058
Number of Sequences: 62578
Number of extensions: 495505
Number of successful extensions: 999
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 966
Number of HSP's gapped (non-prelim): 10
length of query: 344
length of database: 14,973,337
effective HSP length: 100
effective length of query: 244
effective length of database: 8,715,537
effective search space: 2126591028
effective search space used: 2126591028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)