Query 019212
Match_columns 344
No_of_seqs 295 out of 1561
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 07:37:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019212.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019212hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1719 Dual specificity phosp 100.0 6.8E-37 1.5E-41 261.8 13.2 174 55-230 2-176 (183)
2 smart00195 DSPc Dual specifici 100.0 8.2E-30 1.8E-34 217.0 17.6 136 81-222 2-137 (138)
3 PRK12361 hypothetical protein; 100.0 4E-29 8.8E-34 258.1 20.7 170 51-224 63-237 (547)
4 cd00127 DSPc Dual specificity 100.0 4E-28 8.7E-33 205.7 15.9 138 80-221 2-139 (139)
5 PF00782 DSPc: Dual specificit 100.0 5.7E-28 1.2E-32 204.0 11.3 132 87-222 1-132 (133)
6 KOG1718 Dual specificity phosp 99.9 7.6E-27 1.7E-31 202.7 14.9 147 76-228 13-159 (198)
7 KOG1717 Dual specificity phosp 99.9 5.8E-26 1.3E-30 209.6 12.6 145 80-228 172-316 (343)
8 KOG1716 Dual specificity phosp 99.9 3.8E-25 8.2E-30 211.4 16.8 149 79-230 74-222 (285)
9 PTZ00242 protein tyrosine phos 99.9 2.6E-23 5.7E-28 184.0 16.7 144 78-226 9-160 (166)
10 PTZ00393 protein tyrosine phos 99.9 2.9E-22 6.2E-27 185.0 16.9 144 78-227 82-232 (241)
11 KOG1720 Protein tyrosine phosp 99.8 2.5E-19 5.5E-24 161.0 14.7 121 99-224 88-208 (225)
12 PF03162 Y_phosphatase2: Tyros 99.7 8.6E-17 1.9E-21 142.2 7.5 138 80-221 7-147 (164)
13 COG2453 CDC14 Predicted protei 99.7 1.3E-15 2.7E-20 136.5 13.8 99 124-223 67-166 (180)
14 PF05706 CDKN3: Cyclin-depende 99.6 2.8E-15 6E-20 131.6 6.8 112 85-197 41-168 (168)
15 TIGR01244 conserved hypothetic 99.5 8.1E-14 1.8E-18 119.3 13.3 121 81-208 3-129 (135)
16 KOG2836 Protein tyrosine phosp 99.5 4.2E-13 9E-18 113.3 12.8 119 97-221 33-153 (173)
17 PF04273 DUF442: Putative phos 99.4 1.9E-12 4.1E-17 107.3 7.7 98 80-183 2-105 (110)
18 smart00404 PTPc_motif Protein 99.3 3.5E-11 7.5E-16 96.0 11.3 87 134-220 7-102 (105)
19 smart00012 PTPc_DSPc Protein t 99.3 3.5E-11 7.5E-16 96.0 11.3 87 134-220 7-102 (105)
20 PLN02727 NAD kinase 99.3 9.3E-12 2E-16 132.5 9.9 104 86-192 262-370 (986)
21 cd00047 PTPc Protein tyrosine 99.1 4.9E-10 1.1E-14 103.3 11.0 91 129-219 129-227 (231)
22 COG3453 Uncharacterized protei 99.1 2.5E-09 5.5E-14 88.8 11.8 115 81-202 4-124 (130)
23 smart00194 PTPc Protein tyrosi 99.0 1.2E-09 2.5E-14 102.6 10.8 82 138-219 167-254 (258)
24 KOG1572 Predicted protein tyro 99.0 1.8E-09 3.9E-14 99.4 10.5 121 80-203 60-187 (249)
25 PRK15375 pathogenicity island 98.9 5.6E-09 1.2E-13 105.7 11.7 95 130-224 423-529 (535)
26 KOG2283 Clathrin coat dissocia 98.9 6.1E-09 1.3E-13 104.9 10.5 143 80-228 15-178 (434)
27 PF13350 Y_phosphatase3: Tyros 98.9 3.3E-09 7.2E-14 93.3 7.6 110 83-198 16-158 (164)
28 KOG2386 mRNA capping enzyme, g 98.9 3.1E-09 6.6E-14 105.0 7.7 127 97-224 53-185 (393)
29 PHA02742 protein tyrosine phos 98.8 6.1E-08 1.3E-12 93.8 11.2 85 137-221 191-292 (303)
30 PHA02740 protein tyrosine phos 98.7 8.1E-08 1.7E-12 92.8 11.7 83 138-220 187-283 (298)
31 PF00102 Y_phosphatase: Protei 98.7 1.6E-07 3.5E-12 85.5 11.0 84 137-220 143-232 (235)
32 PHA02747 protein tyrosine phos 98.7 1.3E-07 2.8E-12 91.8 10.7 80 138-217 193-288 (312)
33 KOG0792 Protein tyrosine phosp 98.7 9.3E-08 2E-12 102.8 9.9 89 131-221 1032-1126(1144)
34 PHA02746 protein tyrosine phos 98.6 1.6E-07 3.5E-12 91.6 10.7 84 138-221 211-310 (323)
35 PHA02738 hypothetical protein; 98.6 2.8E-07 6.1E-12 89.8 10.5 85 137-221 187-290 (320)
36 PF14566 PTPlike_phytase: Inos 98.5 1.9E-07 4.1E-12 81.3 5.9 64 122-187 85-148 (149)
37 COG5350 Predicted protein tyro 98.5 7.4E-07 1.6E-11 77.2 9.2 116 99-215 26-146 (172)
38 COG2365 Protein tyrosine/serin 98.4 6.8E-07 1.5E-11 84.2 8.2 129 80-211 48-184 (249)
39 COG5599 PTP2 Protein tyrosine 98.4 6.7E-07 1.5E-11 83.8 6.5 92 130-225 185-294 (302)
40 KOG0790 Protein tyrosine phosp 98.4 1.1E-06 2.4E-11 87.2 8.3 121 97-219 372-515 (600)
41 KOG0793 Protein tyrosine phosp 98.0 3.4E-05 7.4E-10 80.4 9.4 88 131-220 896-990 (1004)
42 KOG0791 Protein tyrosine phosp 97.9 7.2E-05 1.6E-09 73.2 9.2 89 131-221 256-350 (374)
43 KOG0789 Protein tyrosine phosp 97.8 8.1E-05 1.8E-09 74.1 9.4 60 162-221 298-363 (415)
44 PF04179 Init_tRNA_PT: Initiat 97.8 0.00026 5.5E-09 72.1 12.2 135 82-220 291-449 (451)
45 KOG4228 Protein tyrosine phosp 97.2 0.00054 1.2E-08 75.0 5.9 69 150-218 713-790 (1087)
46 KOG4228 Protein tyrosine phosp 97.1 0.00077 1.7E-08 73.9 6.2 59 163-221 1018-1081(1087)
47 PF14671 DSPn: Dual specificit 95.5 0.025 5.3E-07 49.0 5.3 68 138-206 39-113 (141)
48 KOG4471 Phosphatidylinositol 3 89.2 0.63 1.4E-05 48.7 5.3 27 157-183 368-394 (717)
49 PLN02160 thiosulfate sulfurtra 87.7 1.2 2.6E-05 37.9 5.4 30 160-192 78-107 (136)
50 cd01518 RHOD_YceA Member of th 83.8 6.7 0.00015 30.8 7.7 29 161-192 59-87 (101)
51 PF06602 Myotub-related: Myotu 83.3 2.7 5.8E-05 41.8 6.1 23 161-183 229-251 (353)
52 COG0607 PspE Rhodanese-related 81.5 4.4 9.6E-05 31.9 5.8 69 102-191 16-86 (110)
53 KOG1089 Myotubularin-related p 79.0 3.4 7.3E-05 43.4 5.3 33 151-183 331-364 (573)
54 PRK01415 hypothetical protein; 65.1 12 0.00025 35.5 5.0 29 161-192 169-197 (247)
55 PRK00142 putative rhodanese-re 62.9 16 0.00035 35.6 5.8 28 162-192 170-197 (314)
56 cd01533 4RHOD_Repeat_2 Member 61.8 21 0.00047 28.4 5.4 27 162-191 65-91 (109)
57 PF02571 CbiJ: Precorrin-6x re 59.8 9.5 0.00021 36.0 3.4 81 86-168 46-135 (249)
58 cd01448 TST_Repeat_1 Thiosulfa 59.7 22 0.00048 28.7 5.3 31 160-192 76-106 (122)
59 cd01520 RHOD_YbbB Member of th 57.3 26 0.00056 29.0 5.3 31 160-192 83-113 (128)
60 TIGR03865 PQQ_CXXCW PQQ-depend 56.1 44 0.00095 29.2 6.8 29 161-191 114-142 (162)
61 COG1054 Predicted sulfurtransf 55.7 26 0.00056 34.1 5.6 91 83-191 105-197 (308)
62 PRK05569 flavodoxin; Provision 55.5 96 0.0021 25.7 8.6 90 128-224 49-139 (141)
63 cd01523 RHOD_Lact_B Member of 53.0 17 0.00036 28.4 3.3 29 161-192 59-87 (100)
64 PF00581 Rhodanese: Rhodanese- 52.5 57 0.0012 25.2 6.4 81 104-192 11-98 (113)
65 cd01528 RHOD_2 Member of the R 51.0 37 0.0008 26.5 5.1 28 162-192 57-84 (101)
66 PRK08057 cobalt-precorrin-6x r 50.8 11 0.00023 35.7 2.1 83 86-174 45-136 (248)
67 PF04343 DUF488: Protein of un 48.7 75 0.0016 26.2 6.8 41 99-139 7-54 (122)
68 PRK11784 tRNA 2-selenouridine 48.3 61 0.0013 32.1 7.1 28 162-191 87-114 (345)
69 PF13292 DXP_synthase_N: 1-deo 46.0 30 0.00064 33.2 4.3 41 123-171 229-269 (270)
70 TIGR03167 tRNA_sel_U_synt tRNA 45.5 61 0.0013 31.6 6.5 28 162-191 73-100 (311)
71 PF03861 ANTAR: ANTAR domain; 45.2 26 0.00057 25.0 3.0 24 180-203 17-40 (56)
72 cd01522 RHOD_1 Member of the R 44.5 43 0.00092 27.3 4.6 28 161-191 62-89 (117)
73 COG0794 GutQ Predicted sugar p 40.7 48 0.001 30.5 4.7 38 147-190 26-63 (202)
74 TIGR00715 precor6x_red precorr 39.4 17 0.00038 34.4 1.7 82 87-168 47-134 (256)
75 PF03668 ATP_bind_2: P-loop AT 36.0 62 0.0013 31.3 4.8 18 165-182 244-261 (284)
76 KOG1530 Rhodanese-related sulf 34.7 68 0.0015 27.6 4.3 74 100-182 32-107 (136)
77 PRK10886 DnaA initiator-associ 33.7 96 0.0021 28.1 5.5 39 146-187 24-62 (196)
78 cd01532 4RHOD_Repeat_1 Member 33.3 67 0.0015 24.7 3.9 28 163-191 50-77 (92)
79 PRK05320 rhodanese superfamily 33.2 81 0.0018 29.9 5.1 28 162-192 174-201 (257)
80 TIGR00204 dxs 1-deoxy-D-xylulo 33.0 49 0.0011 35.4 4.0 47 123-177 232-278 (617)
81 cd01534 4RHOD_Repeat_3 Member 32.3 62 0.0013 24.9 3.6 27 163-192 56-82 (95)
82 cd01447 Polysulfide_ST Polysul 31.1 58 0.0013 25.1 3.3 28 161-191 59-86 (103)
83 PF10302 DUF2407: DUF2407 ubiq 30.9 29 0.00063 28.0 1.5 11 163-173 85-95 (97)
84 cd01525 RHOD_Kc Member of the 30.9 70 0.0015 24.8 3.7 26 163-191 65-90 (105)
85 cd01531 Acr2p Eukaryotic arsen 30.0 1.2E+02 0.0026 24.2 5.0 22 162-183 61-82 (113)
86 PRK05416 glmZ(sRNA)-inactivati 30.0 79 0.0017 30.5 4.5 18 165-182 247-264 (288)
87 COG1154 Dxs Deoxyxylulose-5-ph 29.7 60 0.0013 34.7 3.8 49 121-177 235-283 (627)
88 PF04364 DNA_pol3_chi: DNA pol 29.6 76 0.0017 27.0 3.9 24 149-172 15-38 (137)
89 PRK11493 sseA 3-mercaptopyruva 29.3 52 0.0011 31.2 3.2 28 161-191 229-256 (281)
90 COG2927 HolC DNA polymerase II 29.1 58 0.0012 28.4 3.1 22 151-172 17-38 (144)
91 PF01904 DUF72: Protein of unk 28.8 4.6E+02 0.01 24.1 9.8 76 97-172 134-213 (230)
92 cd01530 Cdc25 Cdc25 phosphatas 28.7 63 0.0014 26.6 3.2 26 161-187 66-91 (121)
93 smart00400 ZnF_CHCC zinc finge 27.8 68 0.0015 22.6 2.8 32 167-200 23-54 (55)
94 TIGR00190 thiC thiamine biosyn 27.3 3E+02 0.0066 28.1 8.1 76 149-224 139-249 (423)
95 PRK07411 hypothetical protein; 27.1 76 0.0017 31.9 4.0 28 162-192 341-368 (390)
96 PF02673 BacA: Bacitracin resi 27.0 62 0.0013 30.8 3.2 27 171-199 159-185 (259)
97 cd01529 4RHOD_Repeats Member o 27.0 80 0.0017 24.3 3.4 28 161-191 54-81 (96)
98 PRK05728 DNA polymerase III su 26.8 80 0.0017 27.0 3.6 25 148-172 14-38 (142)
99 cd01526 RHOD_ThiF Member of th 26.0 73 0.0016 25.9 3.1 28 161-191 70-97 (122)
100 cd01519 RHOD_HSP67B2 Member of 25.9 97 0.0021 24.0 3.7 27 162-191 65-91 (106)
101 cd01443 Cdc25_Acr2p Cdc25 enzy 25.6 1.5E+02 0.0032 23.6 4.9 19 163-181 66-84 (113)
102 PRK10287 thiosulfate:cyanide s 25.5 1.3E+02 0.0029 24.2 4.5 27 162-191 59-85 (104)
103 KOG1004 Exosomal 3'-5' exoribo 25.4 1.4E+02 0.003 27.9 4.9 39 162-202 184-222 (230)
104 PRK13352 thiamine biosynthesis 25.0 3.1E+02 0.0066 28.2 7.7 76 149-224 142-252 (431)
105 PRK12554 undecaprenyl pyrophos 24.1 70 0.0015 30.8 3.0 26 172-199 166-191 (276)
106 TIGR00853 pts-lac PTS system, 24.1 69 0.0015 25.5 2.5 18 163-181 3-20 (95)
107 TIGR02981 phageshock_pspE phag 24.0 1.1E+02 0.0024 24.5 3.7 27 162-191 57-83 (101)
108 COG1660 Predicted P-loop-conta 23.8 1.2E+02 0.0027 29.2 4.5 18 165-182 245-262 (286)
109 PF14532 Sigma54_activ_2: Sigm 23.4 1.8E+02 0.0038 24.1 5.0 33 147-179 5-37 (138)
110 TIGR00753 undec_PP_bacA undeca 23.0 77 0.0017 30.1 3.0 26 172-199 160-185 (255)
111 COG0205 PfkA 6-phosphofructoki 22.9 3.2E+02 0.0069 27.3 7.4 87 100-186 89-185 (347)
112 cd03174 DRE_TIM_metallolyase D 22.8 5.8E+02 0.013 23.2 12.0 117 99-218 122-260 (265)
113 PRK13938 phosphoheptose isomer 22.3 1.6E+02 0.0036 26.6 4.9 42 143-187 25-66 (196)
114 PRK00281 undecaprenyl pyrophos 22.0 83 0.0018 30.1 3.0 26 172-199 164-189 (268)
115 PF01964 ThiC: ThiC family; I 21.9 4.6E+02 0.0099 26.9 8.2 123 102-224 86-248 (420)
116 PRK08057 cobalt-precorrin-6x r 21.8 1.2E+02 0.0027 28.5 4.1 70 90-160 175-247 (248)
117 PRK11449 putative deoxyribonuc 21.6 1.3E+02 0.0028 28.3 4.3 55 147-201 111-171 (258)
118 PRK00162 glpE thiosulfate sulf 21.6 2.2E+02 0.0048 22.3 5.1 29 161-192 56-84 (108)
119 cd05567 PTS_IIB_mannitol PTS_I 21.5 98 0.0021 23.8 2.9 16 164-179 1-16 (87)
120 PRK06646 DNA polymerase III su 21.4 1.2E+02 0.0025 26.6 3.6 26 147-172 13-38 (154)
121 TIGR03642 cas_csx13 CRISPR-ass 21.0 2.4E+02 0.0053 23.8 5.3 56 132-190 56-116 (124)
122 COG2099 CobK Precorrin-6x redu 21.0 68 0.0015 30.6 2.1 93 82-180 43-143 (257)
123 cd01527 RHOD_YgaP Member of th 20.9 1.1E+02 0.0024 23.6 3.1 18 161-179 52-69 (99)
124 PLN02225 1-deoxy-D-xylulose-5- 20.3 1.1E+02 0.0025 33.3 3.9 46 123-176 320-367 (701)
125 COG3707 AmiR Response regulato 20.0 1E+02 0.0022 28.2 3.0 21 183-203 152-172 (194)
No 1
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=100.00 E-value=6.8e-37 Score=261.80 Aligned_cols=174 Identities=60% Similarity=1.014 Sum_probs=163.9
Q ss_pred HHHHHHhhhhhhHHHHhhhccccCCceeecCcEEEcCCCCC-CChhHHHhcCCcEEEEcCCCCCCCCCcccccccCcEEE
Q 019212 55 GARALFYPTLLYNVVRNKFQAEFRWWDRVDEFLLLGAVPFP-TDVPCLKELGVGGVITLNEPYETLVPTSLYHAHCIDHL 133 (344)
Q Consensus 55 ~a~~l~~P~l~~~~~r~~l~~~~~~~~~I~~~LylG~~p~a-~d~~~Lk~~GI~~VInL~~~~e~~~~~~~~~~~GI~yl 133 (344)
++|++|||||+||++|++ ++.++|| +|..++.+|..|+. .+.+.++++|+..|+.+++++|...+...|+..||+++
T Consensus 2 ~ar~~fyptllynvv~~k-~s~~~wy-~~~~~v~~~~~~FrS~~~~~i~ke~v~gvv~~ne~yE~~a~s~~wk~~giE~L 79 (183)
T KOG1719|consen 2 GARVLFYPTLLYNVVREK-ASAFRWY-RIDEFVILGAMPFRSMDVPLIKKENVGGVVTLNEPYELLAPSNLWKNYGIEFL 79 (183)
T ss_pred CceeeecHHHHHHHHHHH-Hhhhcee-eecceEEEeecccccccchHHHhcCCCeEEEeCCchhhhhhhHHHHhccceeE
Confidence 679999999999999999 7789988 99999999999988 47788899999999999999998888889999999999
Q ss_pred EEecCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEcCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCCHHH
Q 019212 134 VIPTRDYCFAPSLGDICRAVDFICENALSRQTTYVHCKAGRGRSTTVVICYLVHHKQMTPDAAYDYVRSIRPRVLLASAQ 213 (344)
Q Consensus 134 ~iPv~D~~~~p~~~~l~~~v~fI~~~~~~g~~VLVHC~~G~gRSgtvvaaYLm~~~g~s~~eAl~~Vr~~Rp~i~~~~~q 213 (344)
.+|+.|....|+.+.+.++++||++....|+.|||||++|++||+|+++||||.+.+|++++|++++|+.||.+.+.+.|
T Consensus 80 ~i~T~D~~~~Ps~~~i~~aVeFi~k~asLGktvYVHCKAGRtRSaTvV~cYLmq~~~wtpe~A~~~vr~iRp~VlL~~~Q 159 (183)
T KOG1719|consen 80 VIPTRDYTGAPSLENIQKAVEFIHKNASLGKTVYVHCKAGRTRSATVVACYLMQHKNWTPEAAVEHVRKIRPRVLLRPAQ 159 (183)
T ss_pred EeccccccCCCCHHHHHHHHHHHHhccccCCeEEEEecCCCccchhhhhhhhhhhcCCCHHHHHHHHHhcCcceeecHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccc
Q 019212 214 WQAVLEYYNLRVNMACL 230 (344)
Q Consensus 214 ~~~L~~f~~~~~~~~~~ 230 (344)
|+.|.+|++....+...
T Consensus 160 w~~l~ef~~~~~~~~ss 176 (183)
T KOG1719|consen 160 WDVLKEFYKQIVANASS 176 (183)
T ss_pred HHHHHHHHHHHHhcccc
Confidence 99999999877665543
No 2
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.97 E-value=8.2e-30 Score=217.01 Aligned_cols=136 Identities=26% Similarity=0.401 Sum_probs=126.5
Q ss_pred eeecCcEEEcCCCCCCChhHHHhcCCcEEEEcCCCCCCCCCcccccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHh
Q 019212 81 DRVDEFLLLGAVPFPTDVPCLKELGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICENA 160 (344)
Q Consensus 81 ~~I~~~LylG~~p~a~d~~~Lk~~GI~~VInL~~~~e~~~~~~~~~~~GI~yl~iPv~D~~~~p~~~~l~~~v~fI~~~~ 160 (344)
++|+|+||+|+.|.+.+.+.|+++||++||||+.+.+. ....+++|+++|+.|....+..+.+.++++||+...
T Consensus 2 ~~I~~~l~~G~~~~~~~~~~l~~~gi~~Vi~l~~~~~~------~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~ 75 (138)
T smart00195 2 SEILPHLYLGSYSSALNLALLKKLGITHVINVTNEVPN------LNKKGFTYLGVPILDNTETKISPYFPEAVEFIEDAE 75 (138)
T ss_pred cEEeCCeEECChhHcCCHHHHHHcCCCEEEEccCCCCC------CCCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHHh
Confidence 78999999999999999999999999999999886442 124789999999999666778899999999999999
Q ss_pred cCCCeEEEEcCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHH
Q 019212 161 LSRQTTYVHCKAGRGRSTTVVICYLVHHKQMTPDAAYDYVRSIRPRVLLASAQWQAVLEYYN 222 (344)
Q Consensus 161 ~~g~~VLVHC~~G~gRSgtvvaaYLm~~~g~s~~eAl~~Vr~~Rp~i~~~~~q~~~L~~f~~ 222 (344)
..+++|||||.+|.|||+++++||||+..||++++|+++|+++||.+.|+++|+++|++|++
T Consensus 76 ~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~~~~~A~~~v~~~R~~~~p~~~~~~qL~~~e~ 137 (138)
T smart00195 76 KKGGKVLVHCQAGVSRSATLIIAYLMKYRNLSLNDAYDFVKDRRPIISPNFGFLRQLIEYER 137 (138)
T ss_pred cCCCeEEEECCCCCchHHHHHHHHHHHHhCCCHHHHHHHHHHHCCccCCCHhHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999986
No 3
>PRK12361 hypothetical protein; Provisional
Probab=99.96 E-value=4e-29 Score=258.09 Aligned_cols=170 Identities=26% Similarity=0.383 Sum_probs=147.4
Q ss_pred HHHHHHHHHHhhhhhhHHH----HhhhccccCCceeecCcEEEcCCCCCCChhHHHhcCCcEEEEcCCCCCCCCCccccc
Q 019212 51 LIGAGARALFYPTLLYNVV----RNKFQAEFRWWDRVDEFLLLGAVPFPTDVPCLKELGVGGVITLNEPYETLVPTSLYH 126 (344)
Q Consensus 51 l~~~~a~~l~~P~l~~~~~----r~~l~~~~~~~~~I~~~LylG~~p~a~d~~~Lk~~GI~~VInL~~~~e~~~~~~~~~ 126 (344)
-++++++|+|+||++++++ .++. ...+++++|.|+||+|+.+.+.+.+.|+++||++|||++.+.+... ....
T Consensus 63 ~~~~~~~~l~~P~l~~~~~~~~~~r~~-~~~~~~~~I~~~l~lG~~~~a~d~~~L~~~gI~~Vldlt~E~~~~~--~~~~ 139 (547)
T PRK12361 63 TIPWYIRWVFIPFLLGTRLYNAWARKR-DSVPAIQKIDENLYLGCRLFPADLEKLKSNKITAILDVTAEFDGLD--WSLT 139 (547)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhcc-cCCCcceEEcCcEEECCCCCcccHHHHHHcCCCEEEEccccccccc--cccc
Confidence 4567999999999964443 3333 4568899999999999999999999999999999999997655321 1123
Q ss_pred ccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEcCCCCChHHHHHHHHHHHh-cCCCHHHHHHHHHhhCC
Q 019212 127 AHCIDHLVIPTRDYCFAPSLGDICRAVDFICENALSRQTTYVHCKAGRGRSTTVVICYLVHH-KQMTPDAAYDYVRSIRP 205 (344)
Q Consensus 127 ~~GI~yl~iPv~D~~~~p~~~~l~~~v~fI~~~~~~g~~VLVHC~~G~gRSgtvvaaYLm~~-~g~s~~eAl~~Vr~~Rp 205 (344)
..+++|+++|+.|. ..|+.++++++++||++..+++++|||||.+|+|||+++++||||.+ .++++++|+++||++||
T Consensus 140 ~~~i~yl~iPi~D~-~~p~~~~l~~a~~~i~~~~~~~~~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp 218 (547)
T PRK12361 140 EEDIDYLNIPILDH-SVPTLAQLNQAINWIHRQVRANKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIRK 218 (547)
T ss_pred ccCceEEEeecCCC-CCCcHHHHHHHHHHHHHHHHCCCeEEEECCCCCCcHHHHHHHHHHHhccCCCHHHHHHHHHHHCC
Confidence 46899999999996 57788999999999999999999999999999999999999999976 58999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q 019212 206 RVLLASAQWQAVLEYYNLR 224 (344)
Q Consensus 206 ~i~~~~~q~~~L~~f~~~~ 224 (344)
.+.+|+.|+++|++|++..
T Consensus 219 ~v~~n~~q~~~l~~~~~~~ 237 (547)
T PRK12361 219 TARLNKRQLRALEKMLEQG 237 (547)
T ss_pred CCCCCHHHHHHHHHHHHcC
Confidence 9999999999999998644
No 4
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.96 E-value=4e-28 Score=205.74 Aligned_cols=138 Identities=28% Similarity=0.373 Sum_probs=126.8
Q ss_pred ceeecCcEEEcCCCCCCChhHHHhcCCcEEEEcCCCCCCCCCcccccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHH
Q 019212 80 WDRVDEFLLLGAVPFPTDVPCLKELGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICEN 159 (344)
Q Consensus 80 ~~~I~~~LylG~~p~a~d~~~Lk~~GI~~VInL~~~~e~~~~~~~~~~~GI~yl~iPv~D~~~~p~~~~l~~~v~fI~~~ 159 (344)
.++|.|+||+|+.+.+.+.+.|++.||++||||+.+.+. ..+...|++|+++|+.|....+....+..+++||+..
T Consensus 2 ~~~i~~~l~~g~~~~~~d~~~L~~~gi~~VI~l~~~~~~----~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~ 77 (139)
T cd00127 2 LSEITPGLYLGSYPAASDKELLKKLGITHVLNVAKEVPN----ENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDA 77 (139)
T ss_pred cCEEcCCeEECChhHhcCHHHHHHcCCCEEEEcccCCCC----cccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHH
Confidence 378999999999999999999999999999999886543 2445689999999999976566778899999999999
Q ss_pred hcCCCeEEEEcCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHH
Q 019212 160 ALSRQTTYVHCKAGRGRSTTVVICYLVHHKQMTPDAAYDYVRSIRPRVLLASAQWQAVLEYY 221 (344)
Q Consensus 160 ~~~g~~VLVHC~~G~gRSgtvvaaYLm~~~g~s~~eAl~~Vr~~Rp~i~~~~~q~~~L~~f~ 221 (344)
...+++|||||.+|.|||++++++|||..++|++++|+++||++||.+.+++.|+++|.+|+
T Consensus 78 ~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~a~~~vr~~r~~~~~~~~~~~~l~~~~ 139 (139)
T cd00127 78 REKGGKVLVHCLAGVSRSATLVIAYLMKTLGLSLREAYEFVKSRRPIISPNAGFMRQLKEYE 139 (139)
T ss_pred HhcCCcEEEECCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHCCccCCCHHHHHHHHHhC
Confidence 88899999999999999999999999999999999999999999999999999999999985
No 5
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.95 E-value=5.7e-28 Score=204.03 Aligned_cols=132 Identities=34% Similarity=0.509 Sum_probs=122.6
Q ss_pred EEEcCCCCCCChhHHHhcCCcEEEEcCCCCCCCCCcccccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHhcCCCeE
Q 019212 87 LLLGAVPFPTDVPCLKELGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICENALSRQTT 166 (344)
Q Consensus 87 LylG~~p~a~d~~~Lk~~GI~~VInL~~~~e~~~~~~~~~~~GI~yl~iPv~D~~~~p~~~~l~~~v~fI~~~~~~g~~V 166 (344)
||+|+.+.+. ...|+++||++|||++.+.+.. ......+++|+++|+.|....+..+.+.++++||+++..++++|
T Consensus 1 lylG~~~~a~-~~~l~~~~I~~Vin~~~~~~~~---~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~V 76 (133)
T PF00782_consen 1 LYLGSYPAAS-IAFLKNLGITHVINLQEECPNP---YFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKV 76 (133)
T ss_dssp EEEEEHHHHC-HHHHHHTTEEEEEECSSSSSTS---HHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEE
T ss_pred CEEeCHHHHh-HHHHHHCCCCEEEEccCCCcCc---hhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhccccee
Confidence 7999999999 9999999999999999864432 34566899999999999777888999999999999999999999
Q ss_pred EEEcCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHH
Q 019212 167 YVHCKAGRGRSTTVVICYLVHHKQMTPDAAYDYVRSIRPRVLLASAQWQAVLEYYN 222 (344)
Q Consensus 167 LVHC~~G~gRSgtvvaaYLm~~~g~s~~eAl~~Vr~~Rp~i~~~~~q~~~L~~f~~ 222 (344)
||||.+|.|||+++++||||...+|++++|+++++++||.+.|++.|+++|.+|++
T Consensus 77 lVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~rp~~~~~~~~~~~L~~~e~ 132 (133)
T PF00782_consen 77 LVHCKAGLSRSGAVAAAYLMKKNGMSLEEAIEYVRSRRPQINPNPSFIRQLYEYEK 132 (133)
T ss_dssp EEEESSSSSHHHHHHHHHHHHHHTSSHHHHHHHHHHHSTTSTHHHHHHHHHHHHHH
T ss_pred EEEeCCCcccchHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999986
No 6
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.95 E-value=7.6e-27 Score=202.71 Aligned_cols=147 Identities=21% Similarity=0.277 Sum_probs=133.0
Q ss_pred ccCCceeecCcEEEcCCCCCCChhHHHhcCCcEEEEcCCCCCCCCCcccccccCcEEEEEecCCCCCCCCHHHHHHHHHH
Q 019212 76 EFRWWDRVDEFLLLGAVPFPTDVPCLKELGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDF 155 (344)
Q Consensus 76 ~~~~~~~I~~~LylG~~p~a~d~~~Lk~~GI~~VInL~~~~e~~~~~~~~~~~GI~yl~iPv~D~~~~p~~~~l~~~v~f 155 (344)
.+.-.++|+++||+++-..+.+...|++++|++|||.+.+.+ +..+ .+++|..+|+.|.+..++.++|+.+.+.
T Consensus 13 ~~~~~SqIt~sLfl~~GvaA~~k~~l~~~~It~IiNat~E~p----n~~l--~~~qy~kv~~~D~p~~~l~~hfD~vAD~ 86 (198)
T KOG1718|consen 13 SIGGMSQITPSLFLSNGVAANDKLLLKKRKITCIINATTEVP----NTSL--PDIQYMKVPLEDTPQARLYDHFDPVADK 86 (198)
T ss_pred CccchhhcCcceeEeccccccCHHHHHhcCceEEEEcccCCC----CccC--CCceeEEEEcccCCcchhhhhhhHHHHH
Confidence 344458999999999888889999999999999999988643 2222 5789999999999999999999999999
Q ss_pred HHHHhcCCCeEEEEcCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhccc
Q 019212 156 ICENALSRQTTYVHCKAGRGRSTTVVICYLVHHKQMTPDAAYDYVRSIRPRVLLASAQWQAVLEYYNLRVNMA 228 (344)
Q Consensus 156 I~~~~~~g~~VLVHC~~G~gRSgtvvaaYLm~~~g~s~~eAl~~Vr~~Rp~i~~~~~q~~~L~~f~~~~~~~~ 228 (344)
|+.....|+++||||.+|.|||+++++||||++.+|++.+|+.+++++||.+.||-+||+||..||+.+..+.
T Consensus 87 I~~v~~~gG~TLvHC~AGVSRSAsLClAYLmK~~~msLreAy~~vKa~RpiIRPN~GFw~QLi~YE~qL~g~~ 159 (198)
T KOG1718|consen 87 IHSVIMRGGKTLVHCVAGVSRSASLCLAYLMKYHCMSLREAYHWVKARRPIIRPNVGFWRQLIDYEQQLFGNA 159 (198)
T ss_pred HHHHHhcCCcEEEEEccccchhHHHHHHHHHHHccchHHHHHHHHHhhCceeCCCccHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999997665443
No 7
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.93 E-value=5.8e-26 Score=209.56 Aligned_cols=145 Identities=22% Similarity=0.236 Sum_probs=133.1
Q ss_pred ceeecCcEEEcCCCCCCChhHHHhcCCcEEEEcCCCCCCCCCcccccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHH
Q 019212 80 WDRVDEFLLLGAVPFPTDVPCLKELGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICEN 159 (344)
Q Consensus 80 ~~~I~~~LylG~~p~a~d~~~Lk~~GI~~VInL~~~~e~~~~~~~~~~~GI~yl~iPv~D~~~~p~~~~l~~~v~fI~~~ 159 (344)
+.+|+|+||+|+...+.|.+.|+++||++|||++...+. .+-+...+.|..||+.|+...+....|++++.||+++
T Consensus 172 PV~ilp~LYLg~a~ds~NldvLkk~gI~yviNVTpnlpn----~fe~~g~f~YkqipisDh~Sqnls~ffpEAIsfIdeA 247 (343)
T KOG1717|consen 172 PVEILPNLYLGCAKDSTNLDVLKKYGIKYVINVTPNLPN----NFENNGEFIYKQIPISDHASQNLSQFFPEAISFIDEA 247 (343)
T ss_pred chhhccchhcccccccccHHHHHhcCceEEEecCCCCcc----hhhcCCceeEEeeeccchhhhhhhhhhHHHHHHHHHh
Confidence 368999999999999999999999999999999986443 2334456899999999999899999999999999999
Q ss_pred hcCCCeEEEEcCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhccc
Q 019212 160 ALSRQTTYVHCKAGRGRSTTVVICYLVHHKQMTPDAAYDYVRSIRPRVLLASAQWQAVLEYYNLRVNMA 228 (344)
Q Consensus 160 ~~~g~~VLVHC~~G~gRSgtvvaaYLm~~~g~s~~eAl~~Vr~~Rp~i~~~~~q~~~L~~f~~~~~~~~ 228 (344)
+.++..|||||-+|++||+|+++||||++..+++.+|+.+|+.++..|.||..|+-||..|++.+....
T Consensus 248 rsk~cgvLVHClaGISRSvTvtvaYLMqkl~lslndAyd~Vk~kksnisPNFnFMgQLldfertlgl~s 316 (343)
T KOG1717|consen 248 RSKNCGVLVHCLAGISRSVTVTVAYLMQKLNLSLNDAYDFVKHKKSNISPNFNFMGQLLDFERTLGLES 316 (343)
T ss_pred hccCCcEEEeeeccccchhHHHHHHHHHHhccchhhHHHHHHHhccCCCCCcchhHHHHHHHHHhhccC
Confidence 999999999999999999999999999999999999999999999999999999999999998776543
No 8
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.93 E-value=3.8e-25 Score=211.41 Aligned_cols=149 Identities=26% Similarity=0.320 Sum_probs=134.8
Q ss_pred CceeecCcEEEcCCCCCCChhHHHhcCCcEEEEcCCCCCCCCCcccccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHH
Q 019212 79 WWDRVDEFLLLGAVPFPTDVPCLKELGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICE 158 (344)
Q Consensus 79 ~~~~I~~~LylG~~p~a~d~~~Lk~~GI~~VInL~~~~e~~~~~~~~~~~GI~yl~iPv~D~~~~p~~~~l~~~v~fI~~ 158 (344)
..+.|.|+||+|+...+.+.+.|+++||++|+|+....+... .....+++|+++|+.|....++..+++++++||+.
T Consensus 74 ~~~~i~p~l~lg~~~~~~~~~~l~~~~it~vln~~~~~~~~~---~~~~~~~~y~~i~~~D~~~~~i~~~~~~~~~fI~~ 150 (285)
T KOG1716|consen 74 PIVEILPNLYLGSQGVASDPDLLKKLGITHVLNVSSSCPNPR---FLKEQGIKYLRIPVEDNPSTDILQHFPEAISFIEK 150 (285)
T ss_pred CceeecCCceecCcccccchhhHHHcCCCEEEEecccCCccc---cccccCceEEeccccCCccccHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999987644321 11223899999999999888999999999999999
Q ss_pred HhcCCCeEEEEcCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhccccc
Q 019212 159 NALSRQTTYVHCKAGRGRSTTVVICYLVHHKQMTPDAAYDYVRSIRPRVLLASAQWQAVLEYYNLRVNMACL 230 (344)
Q Consensus 159 ~~~~g~~VLVHC~~G~gRSgtvvaaYLm~~~g~s~~eAl~~Vr~~Rp~i~~~~~q~~~L~~f~~~~~~~~~~ 230 (344)
+..++++|||||.+|+|||+|+++||||++++|++++|+++|+.+||.+.||.+|+.||++|++.+.+....
T Consensus 151 a~~~~~~vlVHC~~GvSRSat~viAYlM~~~~~~l~~A~~~vk~~R~~i~PN~gf~~QL~~~e~~l~~~~~~ 222 (285)
T KOG1716|consen 151 AREKGGKVLVHCQAGVSRSATLVIAYLMKYEGLSLEDAYELVKSRRPIISPNFGFLRQLLEFEKRLSKKSPS 222 (285)
T ss_pred HHhCCCeEEEEcCCccchhHHHHHHHHHHHcCCCHHHHHHHHHHhCCccCCCHHHHHHHHHHHHhhccCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999888766543
No 9
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.91 E-value=2.6e-23 Score=184.03 Aligned_cols=144 Identities=24% Similarity=0.261 Sum_probs=123.8
Q ss_pred CCceeecCcEEEcCCCCCCCh----hHHHhcCCcEEEEcCCCCCCCCCcccccccCcEEEEEecCCCCCCCCHHHHHHHH
Q 019212 78 RWWDRVDEFLLLGAVPFPTDV----PCLKELGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYCFAPSLGDICRAV 153 (344)
Q Consensus 78 ~~~~~I~~~LylG~~p~a~d~----~~Lk~~GI~~VInL~~~~e~~~~~~~~~~~GI~yl~iPv~D~~~~p~~~~l~~~v 153 (344)
+-.+.+...++.-..|..... +.|+++||++||+++++. ++...++..|++|+++|+.|. .+|+.+.+.+++
T Consensus 9 ~~~~~~~~r~~~~~~P~~~~~~~~l~~L~~~gI~~Iv~l~~~~---~~~~~~~~~gi~~~~~p~~D~-~~P~~~~i~~~~ 84 (166)
T PTZ00242 9 RQIEYVLFKFLILDAPSPSNLPLYIKELQRYNVTHLVRVCGPT---YDAELLEKNGIEVHDWPFDDG-APPPKAVIDNWL 84 (166)
T ss_pred cceeeeceEEEEecCCCcccHHHHHHHHHhCCCeEEEecCCCC---CCHHHHHHCCCEEEecCCCCC-CCCCHHHHHHHH
Confidence 334678888888888888544 788999999999998752 244467778999999999885 688888999999
Q ss_pred HHHHHHhcC----CCeEEEEcCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhc
Q 019212 154 DFICENALS----RQTTYVHCKAGRGRSTTVVICYLVHHKQMTPDAAYDYVRSIRPRVLLASAQWQAVLEYYNLRVN 226 (344)
Q Consensus 154 ~fI~~~~~~----g~~VLVHC~~G~gRSgtvvaaYLm~~~g~s~~eAl~~Vr~~Rp~i~~~~~q~~~L~~f~~~~~~ 226 (344)
+++++.+.. |++|+|||.+|.||||+++++|||+++++++++|+++||++||... ++.|+++|++|.+...+
T Consensus 85 ~~i~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~~~~s~~eAi~~vr~~R~~~i-~~~Q~~~l~~~~~~~~~ 160 (166)
T PTZ00242 85 RLLDQEFAKQSTPPETIAVHCVAGLGRAPILVALALVEYGGMEPLDAVGFVREKRKGAI-NQTQLQFLKKYKPRKKA 160 (166)
T ss_pred HHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCCCc-hHHHHHHHHHHHHHhcc
Confidence 999887644 8999999999999999999999999999999999999999999875 79999999999975544
No 10
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.89 E-value=2.9e-22 Score=185.05 Aligned_cols=144 Identities=17% Similarity=0.192 Sum_probs=121.5
Q ss_pred CCceeecCc---EEEcCCCCCCC----hhHHHhcCCcEEEEcCCCCCCCCCcccccccCcEEEEEecCCCCCCCCHHHHH
Q 019212 78 RWWDRVDEF---LLLGAVPFPTD----VPCLKELGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYCFAPSLGDIC 150 (344)
Q Consensus 78 ~~~~~I~~~---LylG~~p~a~d----~~~Lk~~GI~~VInL~~~~e~~~~~~~~~~~GI~yl~iPv~D~~~~p~~~~l~ 150 (344)
+.+.+|.-+ +.+-..|.... ++.|+++||++||+++++ .++...++..||+++++|+.|. .+|..+.++
T Consensus 82 ~~~~~ie~~~~rfLi~~~P~~~~~~~yl~eLk~~gV~~lVrlcE~---~Yd~~~~~~~GI~~~~lpipDg-~aPs~~~i~ 157 (241)
T PTZ00393 82 NHPTKIEHGKIKILILDAPTNDLLPLYIKEMKNYNVTDLVRTCER---TYNDGEITSAGINVHELIFPDG-DAPTVDIVS 157 (241)
T ss_pred ccchhhccCceeEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCC---CCCHHHHHHcCCeEEEeecCCC-CCCCHHHHH
Confidence 334454432 55556666544 478899999999999874 3455567889999999999995 688899999
Q ss_pred HHHHHHHHHhcCCCeEEEEcCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcc
Q 019212 151 RAVDFICENALSRQTTYVHCKAGRGRSTTVVICYLVHHKQMTPDAAYDYVRSIRPRVLLASAQWQAVLEYYNLRVNM 227 (344)
Q Consensus 151 ~~v~fI~~~~~~g~~VLVHC~~G~gRSgtvvaaYLm~~~g~s~~eAl~~Vr~~Rp~i~~~~~q~~~L~~f~~~~~~~ 227 (344)
++++++++.+..|++|+|||.+|.||||+++++|||. .||++++|+++||+.||.+. +..|+++|++|++...++
T Consensus 158 ~~l~~i~~~l~~g~~VaVHC~AGlGRTGtl~AayLI~-~GmspeeAI~~VR~~RPgAI-n~~Q~~fL~~y~~~~~k~ 232 (241)
T PTZ00393 158 NWLTIVNNVIKNNRAVAVHCVAGLGRAPVLASIVLIE-FGMDPIDAIVFIRDRRKGAI-NKRQLQFLKAYKKKKKKK 232 (241)
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHH-cCCCHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcccc
Confidence 9999999998889999999999999999999999998 79999999999999999885 789999999999766544
No 11
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=99.82 E-value=2.5e-19 Score=161.01 Aligned_cols=121 Identities=26% Similarity=0.365 Sum_probs=110.4
Q ss_pred hHHHhcCCcEEEEcCCCCCCCCCcccccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEcCCCCChHH
Q 019212 99 PCLKELGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICENALSRQTTYVHCKAGRGRST 178 (344)
Q Consensus 99 ~~Lk~~GI~~VInL~~~~e~~~~~~~~~~~GI~yl~iPv~D~~~~p~~~~l~~~v~fI~~~~~~g~~VLVHC~~G~gRSg 178 (344)
..++.++++.++-|+.. .++.+.+...||.++++|+.|. .+|+.+.+.++++.++.+.+ +++|.|||++|.||||
T Consensus 88 ~~~~~~~v~s~vrln~~---~yd~~~f~~~Gi~h~~l~f~Dg-~tP~~~~v~~fv~i~e~~~~-~g~iaVHCkaGlGRTG 162 (225)
T KOG1720|consen 88 QYFKNNNVTSIVRLNKR---LYDAKRFTDAGIDHHDLFFADG-STPTDAIVKEFVKIVENAEK-GGKIAVHCKAGLGRTG 162 (225)
T ss_pred HHhhhcccceEEEcCCC---CCChHHhcccCceeeeeecCCC-CCCCHHHHHHHHHHHHHHHh-cCeEEEEeccCCCchh
Confidence 34677899999999875 4566678889999999999995 79999999999999999988 9999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHH
Q 019212 179 TVVICYLVHHKQMTPDAAYDYVRSIRPRVLLASAQWQAVLEYYNLR 224 (344)
Q Consensus 179 tvvaaYLm~~~g~s~~eAl~~Vr~~Rp~i~~~~~q~~~L~~f~~~~ 224 (344)
++++||||+.++|++.||+..+|..||.++.++.|...+.+|..+.
T Consensus 163 ~liAc~lmy~~g~ta~eaI~~lR~~RpG~V~gpqQ~~l~~~q~~~~ 208 (225)
T KOG1720|consen 163 TLIACYLMYEYGMTAGEAIAWLRICRPGAVIGPQQHKLLHKQRDLW 208 (225)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCCccccCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998753
No 12
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=99.67 E-value=8.6e-17 Score=142.20 Aligned_cols=138 Identities=19% Similarity=0.251 Sum_probs=89.5
Q ss_pred ceeecCcEEEcCCCCCCChhHHHhcCCcEEEEcCCCCCCCCCcccccccCcEEEEEecCCCCC---CCCHHHHHHHHHHH
Q 019212 80 WDRVDEFLLLGAVPFPTDVPCLKELGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYCF---APSLGDICRAVDFI 156 (344)
Q Consensus 80 ~~~I~~~LylG~~p~a~d~~~Lk~~GI~~VInL~~~~e~~~~~~~~~~~GI~yl~iPv~D~~~---~p~~~~l~~~v~fI 156 (344)
|..|.++||.|++|.+.+..+|+++|+++||+|+.+..........++.||+++++++..... ....+.+.++++.|
T Consensus 7 F~~V~~~vYRS~~P~~~n~~fL~~L~LKTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~i 86 (164)
T PF03162_consen 7 FGMVEPGVYRSAQPTPANFPFLERLGLKTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALEII 86 (164)
T ss_dssp -EEEETTEEEESS--HHHHHHHHHHT-SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHHHH
T ss_pred ccCCCCCccCCCCCChhhHHHHHHCCCceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHHHH
Confidence 688999999999999999999999999999999876332111225578999999999986532 24567788888877
Q ss_pred HHHhcCCCeEEEEcCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHH
Q 019212 157 CENALSRQTTYVHCKAGRGRSTTVVICYLVHHKQMTPDAAYDYVRSIRPRVLLASAQWQAVLEYY 221 (344)
Q Consensus 157 ~~~~~~g~~VLVHC~~G~gRSgtvvaaYLm~~~g~s~~eAl~~Vr~~Rp~i~~~~~q~~~L~~f~ 221 (344)
.+.. +.||||||.+|..|||++++||- +.+||+..+|++..+.--.. ..+..-.++++.|.
T Consensus 87 ld~~--n~PvLiHC~~G~~rTG~vvg~lR-k~Q~W~~~~i~~Ey~~f~~~-~~~~~~~~fIe~f~ 147 (164)
T PF03162_consen 87 LDPR--NYPVLIHCNHGKDRTGLVVGCLR-KLQGWSLSSIFDEYRRFAGP-KIRYLDEQFIELFD 147 (164)
T ss_dssp H-GG--G-SEEEE-SSSSSHHHHHHHHHH-HHTTB-HHHHHHHHHHHHGG-G--HHHHHHHHT--
T ss_pred hCCC--CCCEEEEeCCCCcchhhHHHHHH-HHcCCCHHHHHHHHHHhcCC-CCcHHHHHHHHhcC
Confidence 6543 57999999999999999999999 67999999999887764322 34455556666665
No 13
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.66 E-value=1.3e-15 Score=136.55 Aligned_cols=99 Identities=31% Similarity=0.387 Sum_probs=83.9
Q ss_pred cccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEcCCCCChHHHHHHHHHHHhcC-CCHHHHHHHHHh
Q 019212 124 LYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICENALSRQTTYVHCKAGRGRSTTVVICYLVHHKQ-MTPDAAYDYVRS 202 (344)
Q Consensus 124 ~~~~~GI~yl~iPv~D~~~~p~~~~l~~~v~fI~~~~~~g~~VLVHC~~G~gRSgtvvaaYLm~~~g-~s~~eAl~~Vr~ 202 (344)
.....++.++++|+.|+ ..|..+++.+++++|+++.++|++|+|||.+|.|||||+++||||.+++ +..++++.+++.
T Consensus 67 ~~~~~~~~~~~~~~~D~-~~p~~~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~~~~ 145 (180)
T COG2453 67 IEENDGIQVLHLPILDG-TVPDLEDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVKRR 145 (180)
T ss_pred eeccCCceeeeeeecCC-CCCcHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 44567899999999996 6888899999999999999999999999999999999999999999855 578888888888
Q ss_pred hCCCCCCCHHHHHHHHHHHHH
Q 019212 203 IRPRVLLASAQWQAVLEYYNL 223 (344)
Q Consensus 203 ~Rp~i~~~~~q~~~L~~f~~~ 223 (344)
+||.......|..+..+....
T Consensus 146 ~r~~~v~~~~q~~~~~e~~~~ 166 (180)
T COG2453 146 RRPGAVVTEIQHLFELEQELF 166 (180)
T ss_pred cCCcccccHHHHHHHHHHHHH
Confidence 888656666666666555543
No 14
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.58 E-value=2.8e-15 Score=131.63 Aligned_cols=112 Identities=29% Similarity=0.411 Sum_probs=76.0
Q ss_pred CcEEEcCCCC----------CCChhHHHhcCCcEEEEcCCCCCC---CCCc--ccccccCcEEEEEecCCCCCCCCHHHH
Q 019212 85 EFLLLGAVPF----------PTDVPCLKELGVGGVITLNEPYET---LVPT--SLYHAHCIDHLVIPTRDYCFAPSLGDI 149 (344)
Q Consensus 85 ~~LylG~~p~----------a~d~~~Lk~~GI~~VInL~~~~e~---~~~~--~~~~~~GI~yl~iPv~D~~~~p~~~~l 149 (344)
.+|.+...|- ..|++.|+..|++.||.+++..|. ..+. ..++..|+.++++|+.|. ..|..+.+
T Consensus 41 ~~Lglt~~PG~k~~d~~RdL~~DL~~Lk~~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~-~aPd~~~~ 119 (168)
T PF05706_consen 41 GFLGLTFLPGCKFKDWRRDLQADLERLKDWGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDG-SAPDFAAA 119 (168)
T ss_dssp SEEEEES-TT-EETTEEB-HHHHHHHHHHTT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TT-S---HHHH
T ss_pred ceeeeecCCCcccccccchHHHHHHHHHHCCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCC-CCCCHHHH
Confidence 4577777665 245568999999999999887653 1222 467889999999999996 56778778
Q ss_pred HHHHHHHHHHhcCCCeEEEEcCCCCChHHHHHHHHHHHhc-CCCHHHHH
Q 019212 150 CRAVDFICENALSRQTTYVHCKAGRGRSTTVVICYLVHHK-QMTPDAAY 197 (344)
Q Consensus 150 ~~~v~fI~~~~~~g~~VLVHC~~G~gRSgtvvaaYLm~~~-g~s~~eAl 197 (344)
.++++.|...+.+|++|+|||..|.||||+|++|+|+... .+++++|+
T Consensus 120 ~~i~~eL~~~L~~g~~V~vHC~GGlGRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 120 WQILEELAARLENGRKVLVHCRGGLGRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp HHHHHHHHHHHHTT--EEEE-SSSSSHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred HHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCChhhcC
Confidence 8889999999999999999999999999999999999754 47999986
No 15
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.55 E-value=8.1e-14 Score=119.32 Aligned_cols=121 Identities=14% Similarity=0.086 Sum_probs=97.3
Q ss_pred eeecCcEEEcCCCCCCChhHHHhcCCcEEEEcCCCCCC-CCCcc-----cccccCcEEEEEecCCCCCCCCHHHHHHHHH
Q 019212 81 DRVDEFLLLGAVPFPTDVPCLKELGVGGVITLNEPYET-LVPTS-----LYHAHCIDHLVIPTRDYCFAPSLGDICRAVD 154 (344)
Q Consensus 81 ~~I~~~LylG~~p~a~d~~~Lk~~GI~~VInL~~~~e~-~~~~~-----~~~~~GI~yl~iPv~D~~~~p~~~~l~~~v~ 154 (344)
.+|.+.+|+++.+...+.+.|+++||++|||+..+.|. ..|.. .....|++|+++|+... ....+.+..+.+
T Consensus 3 ~~i~~~~~~s~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~--~~~~~~v~~f~~ 80 (135)
T TIGR01244 3 RKLTEHLYVSPQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAG--DITPDDVETFRA 80 (135)
T ss_pred eEcCCCeeEcCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCC--CCCHHHHHHHHH
Confidence 57999999999999999999999999999999876553 22321 22457999999998863 346667777777
Q ss_pred HHHHHhcCCCeEEEEcCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCC
Q 019212 155 FICENALSRQTTYVHCKAGRGRSTTVVICYLVHHKQMTPDAAYDYVRSIRPRVL 208 (344)
Q Consensus 155 fI~~~~~~g~~VLVHC~~G~gRSgtvvaaYLm~~~g~s~~eAl~~Vr~~Rp~i~ 208 (344)
+++. ..+|||+||++|. ||+.+.+.++.. .|++.+++++..+..-..+.
T Consensus 81 ~~~~---~~~pvL~HC~sG~-Rt~~l~al~~~~-~g~~~~~i~~~~~~~G~~~~ 129 (135)
T TIGR01244 81 AIGA---AEGPVLAYCRSGT-RSSLLWGFRQAA-EGVPVEEIVRRAQAAGYDLS 129 (135)
T ss_pred HHHh---CCCCEEEEcCCCh-HHHHHHHHHHHH-cCCCHHHHHHHHHHcCCCcc
Confidence 7763 3689999999999 999998777765 88999999999988766543
No 16
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=99.49 E-value=4.2e-13 Score=113.33 Aligned_cols=119 Identities=24% Similarity=0.259 Sum_probs=98.6
Q ss_pred ChhHHHhcCCcEEEEcCCCCCCCCCcccccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHhcC--CCeEEEEcCCCC
Q 019212 97 DVPCLKELGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICENALS--RQTTYVHCKAGR 174 (344)
Q Consensus 97 d~~~Lk~~GI~~VInL~~~~e~~~~~~~~~~~GI~yl~iPv~D~~~~p~~~~l~~~v~fI~~~~~~--g~~VLVHC~~G~ 174 (344)
-++.|+++|+++||-+|++ .++....+..||..+.||.+|. .+|..+.+++.+..+.....+ +..|.|||.+|.
T Consensus 33 fieELkKygvttvVRVCe~---TYdt~~lek~GI~Vldw~f~dg-~ppp~qvv~~w~~l~~~~f~e~p~~cvavhcvagl 108 (173)
T KOG2836|consen 33 FIEELKKYGVTTVVRVCEP---TYDTTPLEKEGITVLDWPFDDG-APPPNQVVDDWLSLVKTKFREEPGCCVAVHCVAGL 108 (173)
T ss_pred HHHHHHhcCCeEEEEeccc---ccCCchhhhcCceEeecccccC-CCCchHHHHHHHHHHHHHHhhCCCCeEEEEeeccc
Confidence 3467999999999999975 3455567889999999999994 666666666666655443332 689999999999
Q ss_pred ChHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHH
Q 019212 175 GRSTTVVICYLVHHKQMTPDAAYDYVRSIRPRVLLASAQWQAVLEYY 221 (344)
Q Consensus 175 gRSgtvvaaYLm~~~g~s~~eAl~~Vr~~Rp~i~~~~~q~~~L~~f~ 221 (344)
||.+.+++.-|+. .||..++|++++|.+|.+ .+|..|+.+|..|.
T Consensus 109 grapvlvalalie-~gmkyedave~ir~krrg-a~n~kql~~lekyr 153 (173)
T KOG2836|consen 109 GRAPVLVALALIE-AGMKYEDAVEMIRQKRRG-AINSKQLLYLEKYR 153 (173)
T ss_pred CcchHHHHHHHHH-ccccHHHHHHHHHHHhhc-cccHHHHHHHHHhC
Confidence 9999999998997 899999999999999954 78899999998886
No 17
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=99.36 E-value=1.9e-12 Score=107.27 Aligned_cols=98 Identities=21% Similarity=0.277 Sum_probs=66.6
Q ss_pred ceeecCcEEEcCCCCCCChhHHHhcCCcEEEEcCCCCCCC-CCc-----ccccccCcEEEEEecCCCCCCCCHHHHHHHH
Q 019212 80 WDRVDEFLLLGAVPFPTDVPCLKELGVGGVITLNEPYETL-VPT-----SLYHAHCIDHLVIPTRDYCFAPSLGDICRAV 153 (344)
Q Consensus 80 ~~~I~~~LylG~~p~a~d~~~Lk~~GI~~VInL~~~~e~~-~~~-----~~~~~~GI~yl~iPv~D~~~~p~~~~l~~~v 153 (344)
+.+|.+.+++++++.+.++..|++.|+++|||++.+.|.. .|. ...++.|+.|+++|+... .+..+++..+.
T Consensus 2 i~~i~~~~~vs~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~--~~~~~~v~~f~ 79 (110)
T PF04273_consen 2 IRQISDDLSVSGQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGG--AITEEDVEAFA 79 (110)
T ss_dssp -EEEETTEEEECS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TT--T--HHHHHHHH
T ss_pred CEecCCCeEECCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCC--CCCHHHHHHHH
Confidence 3679999999999999999999999999999998775542 121 256789999999999863 56778888888
Q ss_pred HHHHHHhcCCCeEEEEcCCCCChHHHHHHH
Q 019212 154 DFICENALSRQTTYVHCKAGRGRSTTVVIC 183 (344)
Q Consensus 154 ~fI~~~~~~g~~VLVHC~~G~gRSgtvvaa 183 (344)
+.+++. .+|||+||+.|. |++++.+.
T Consensus 80 ~~l~~~---~~Pvl~hC~sG~-Ra~~l~~l 105 (110)
T PF04273_consen 80 DALESL---PKPVLAHCRSGT-RASALWAL 105 (110)
T ss_dssp HHHHTT---TTSEEEE-SCSH-HHHHHHHH
T ss_pred HHHHhC---CCCEEEECCCCh-hHHHHHHH
Confidence 887764 689999999998 88766554
No 18
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=99.29 E-value=3.5e-11 Score=96.02 Aligned_cols=87 Identities=21% Similarity=0.201 Sum_probs=68.9
Q ss_pred EEecCCCCCCCCHHHHHHHHHHHHHHhc---CCCeEEEEcCCCCChHHHHHHHHHHHhc------CCCHHHHHHHHHhhC
Q 019212 134 VIPTRDYCFAPSLGDICRAVDFICENAL---SRQTTYVHCKAGRGRSTTVVICYLVHHK------QMTPDAAYDYVRSIR 204 (344)
Q Consensus 134 ~iPv~D~~~~p~~~~l~~~v~fI~~~~~---~g~~VLVHC~~G~gRSgtvvaaYLm~~~------g~s~~eAl~~Vr~~R 204 (344)
+.++.|...+...+.+.+++..+++... .+++|+|||.+|.||||+++++|++... ..++.+++..+|.+|
T Consensus 7 ~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~r 86 (105)
T smart00404 7 YTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELRKQR 86 (105)
T ss_pred eCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhhh
Confidence 3344454444455778888887777654 3679999999999999999999988653 368999999999999
Q ss_pred CCCCCCHHHHHHHHHH
Q 019212 205 PRVLLASAQWQAVLEY 220 (344)
Q Consensus 205 p~i~~~~~q~~~L~~f 220 (344)
|....+..|..++...
T Consensus 87 ~~~~~~~~q~~~~~~~ 102 (105)
T smart00404 87 PGMVQTFEQYLFLYRA 102 (105)
T ss_pred hhhCCcHHHHHHHHHH
Confidence 9999999999887654
No 19
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=99.29 E-value=3.5e-11 Score=96.02 Aligned_cols=87 Identities=21% Similarity=0.201 Sum_probs=68.9
Q ss_pred EEecCCCCCCCCHHHHHHHHHHHHHHhc---CCCeEEEEcCCCCChHHHHHHHHHHHhc------CCCHHHHHHHHHhhC
Q 019212 134 VIPTRDYCFAPSLGDICRAVDFICENAL---SRQTTYVHCKAGRGRSTTVVICYLVHHK------QMTPDAAYDYVRSIR 204 (344)
Q Consensus 134 ~iPv~D~~~~p~~~~l~~~v~fI~~~~~---~g~~VLVHC~~G~gRSgtvvaaYLm~~~------g~s~~eAl~~Vr~~R 204 (344)
+.++.|...+...+.+.+++..+++... .+++|+|||.+|.||||+++++|++... ..++.+++..+|.+|
T Consensus 7 ~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~r 86 (105)
T smart00012 7 YTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELRKQR 86 (105)
T ss_pred eCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhhh
Confidence 3344454444455778888887777654 3679999999999999999999988653 368999999999999
Q ss_pred CCCCCCHHHHHHHHHH
Q 019212 205 PRVLLASAQWQAVLEY 220 (344)
Q Consensus 205 p~i~~~~~q~~~L~~f 220 (344)
|....+..|..++...
T Consensus 87 ~~~~~~~~q~~~~~~~ 102 (105)
T smart00012 87 PGMVQTFEQYLFLYRA 102 (105)
T ss_pred hhhCCcHHHHHHHHHH
Confidence 9999999999887654
No 20
>PLN02727 NAD kinase
Probab=99.29 E-value=9.3e-12 Score=132.54 Aligned_cols=104 Identities=17% Similarity=0.235 Sum_probs=87.2
Q ss_pred cEEEcCCCCCCChhHHHhcCCcEEEEcCCCCCC--CCC---cccccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHh
Q 019212 86 FLLLGAVPFPTDVPCLKELGVGGVITLNEPYET--LVP---TSLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICENA 160 (344)
Q Consensus 86 ~LylG~~p~a~d~~~Lk~~GI~~VInL~~~~e~--~~~---~~~~~~~GI~yl~iPv~D~~~~p~~~~l~~~v~fI~~~~ 160 (344)
.+|++++|.+.+++.|.+.||++|||++++.+. +.. ....+..|++|+++|+.+. .+|..+++.++.+++++.
T Consensus 262 ~~~rsgQpspe~la~LA~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~-~apt~EqVe~fa~~l~~s- 339 (986)
T PLN02727 262 AFWRGGQVTEEGLKWLLEKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVR-TAPSAEQVEKFASLVSDS- 339 (986)
T ss_pred eEEEeCCCCHHHHHHHHHCCCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCC-CCCCHHHHHHHHHHHHhh-
Confidence 479999999999999999999999999887653 111 1244568999999999873 588899999999999553
Q ss_pred cCCCeEEEEcCCCCChHHHHHHHHHHHhcCCC
Q 019212 161 LSRQTTYVHCKAGRGRSTTVVICYLVHHKQMT 192 (344)
Q Consensus 161 ~~g~~VLVHC~~G~gRSgtvvaaYLm~~~g~s 192 (344)
..+|||+||+.|..|+|+|++||+.+.-+..
T Consensus 340 -lpkPVLvHCKSGarRAGamvA~yl~~~~~~~ 370 (986)
T PLN02727 340 -SKKPIYLHSKEGVWRTSAMVSRWKQYMTRSA 370 (986)
T ss_pred -cCCCEEEECCCCCchHHHHHHHHHHHHcccc
Confidence 2789999999999999999999999876654
No 21
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=99.11 E-value=4.9e-10 Score=103.29 Aligned_cols=91 Identities=18% Similarity=0.239 Sum_probs=71.4
Q ss_pred CcEEEEEe-cCCCCCCCCHHHHHHHHHHHHHHhc--CCCeEEEEcCCCCChHHHHHHHHHHHhc-----CCCHHHHHHHH
Q 019212 129 CIDHLVIP-TRDYCFAPSLGDICRAVDFICENAL--SRQTTYVHCKAGRGRSTTVVICYLVHHK-----QMTPDAAYDYV 200 (344)
Q Consensus 129 GI~yl~iP-v~D~~~~p~~~~l~~~v~fI~~~~~--~g~~VLVHC~~G~gRSgtvvaaYLm~~~-----g~s~~eAl~~V 200 (344)
.+.++++. +.|...++..+.+.+++..+++... .+++|+|||.+|.||||++++++++... .+++.+++..+
T Consensus 129 ~V~~~~~~~W~d~~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~~i 208 (231)
T cd00047 129 TVTHFQYTGWPDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKEL 208 (231)
T ss_pred EEEEEeECCCCCCCccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 34455544 4455445555777788877776642 4679999999999999999999876433 57999999999
Q ss_pred HhhCCCCCCCHHHHHHHHH
Q 019212 201 RSIRPRVLLASAQWQAVLE 219 (344)
Q Consensus 201 r~~Rp~i~~~~~q~~~L~~ 219 (344)
|++|+.+..++.|+.+++.
T Consensus 209 R~~R~~~v~~~~Qy~f~~~ 227 (231)
T cd00047 209 RSQRPGMVQTEEQYIFLYR 227 (231)
T ss_pred HhccccccCCHHHHHHHHH
Confidence 9999999999999999875
No 22
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.06 E-value=2.5e-09 Score=88.77 Aligned_cols=115 Identities=17% Similarity=0.163 Sum_probs=92.1
Q ss_pred eeecCcEEEcCCCCCCChhHHHhcCCcEEEEcCCCCCCC-CCc-----ccccccCcEEEEEecCCCCCCCCHHHHHHHHH
Q 019212 81 DRVDEFLLLGAVPFPTDVPCLKELGVGGVITLNEPYETL-VPT-----SLYHAHCIDHLVIPTRDYCFAPSLGDICRAVD 154 (344)
Q Consensus 81 ~~I~~~LylG~~p~a~d~~~Lk~~GI~~VInL~~~~e~~-~~~-----~~~~~~GI~yl~iPv~D~~~~p~~~~l~~~v~ 154 (344)
.+|.+.+.+++++...|...++.+|++.|||..+..|.. .|. ...+..|+.|.++|+... ..+.++++.+.+
T Consensus 4 ~~I~d~lsVsgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~--~iT~~dV~~f~~ 81 (130)
T COG3453 4 RRINDRLSVSGQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGG--GITEADVEAFQR 81 (130)
T ss_pred eecccceeecCCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCC--CCCHHHHHHHHH
Confidence 579999999999999999999999999999998876642 222 245679999999999864 566778888888
Q ss_pred HHHHHhcCCCeEEEEcCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHh
Q 019212 155 FICENALSRQTTYVHCKAGRGRSTTVVICYLVHHKQMTPDAAYDYVRS 202 (344)
Q Consensus 155 fI~~~~~~g~~VLVHC~~G~gRSgtvvaaYLm~~~g~s~~eAl~~Vr~ 202 (344)
.|+++ ++|||.||+.|. ||.++-..-. ...||+.+++..+=+.
T Consensus 82 Al~ea---egPVlayCrsGt-Rs~~ly~~~~-~~~gm~~de~~a~g~a 124 (130)
T COG3453 82 ALDEA---EGPVLAYCRSGT-RSLNLYGLGE-LDGGMSRDEIEALGQA 124 (130)
T ss_pred HHHHh---CCCEEeeecCCc-hHHHHHHHHH-HhcCCCHHHHHHHHHh
Confidence 88877 899999999996 7755544333 5689999888776444
No 23
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=99.05 E-value=1.2e-09 Score=102.59 Aligned_cols=82 Identities=22% Similarity=0.257 Sum_probs=66.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhcC-CCeEEEEcCCCCChHHHHHHHHHHH-----hcCCCHHHHHHHHHhhCCCCCCCH
Q 019212 138 RDYCFAPSLGDICRAVDFICENALS-RQTTYVHCKAGRGRSTTVVICYLVH-----HKQMTPDAAYDYVRSIRPRVLLAS 211 (344)
Q Consensus 138 ~D~~~~p~~~~l~~~v~fI~~~~~~-g~~VLVHC~~G~gRSgtvvaaYLm~-----~~g~s~~eAl~~Vr~~Rp~i~~~~ 211 (344)
.|...+.....+.+++..++..... +++|+|||.+|.||||++++++++. ...+++.+++..+|.+|+.+..+.
T Consensus 167 ~d~~~P~~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~lR~~R~~~v~~~ 246 (258)
T smart00194 167 PDHGVPESPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELRSQRPGMVQTE 246 (258)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHHHHhccccccCCH
Confidence 3544444667777777777766443 6899999999999999999998763 245799999999999999999999
Q ss_pred HHHHHHHH
Q 019212 212 AQWQAVLE 219 (344)
Q Consensus 212 ~q~~~L~~ 219 (344)
.|+.+++.
T Consensus 247 ~Qy~f~~~ 254 (258)
T smart00194 247 EQYIFLYR 254 (258)
T ss_pred HHHHHHHH
Confidence 99999865
No 24
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=99.02 E-value=1.8e-09 Score=99.39 Aligned_cols=121 Identities=18% Similarity=0.213 Sum_probs=94.2
Q ss_pred ceeecCcEEEcCCCCCCChhHHHhcCCcEEEEcCCCCCCCCCcccccccCcEEEEEecCCCCC------CC-CHHHHHHH
Q 019212 80 WDRVDEFLLLGAVPFPTDVPCLKELGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYCF------AP-SLGDICRA 152 (344)
Q Consensus 80 ~~~I~~~LylG~~p~a~d~~~Lk~~GI~~VInL~~~~e~~~~~~~~~~~GI~yl~iPv~D~~~------~p-~~~~l~~~ 152 (344)
|+.|.+.||.|++|.+.+..+|+.+++++||.|+.+......-..++.++|++++|-+...-. .+ ..+.+.++
T Consensus 60 Fs~V~~~lyRSg~P~~~NfsFL~~L~LksIisL~pE~yp~~nl~f~~~~~Ik~~~i~ie~~k~~~k~P~~~~~~~~i~~~ 139 (249)
T KOG1572|consen 60 FSMVDNGLYRSGFPRPENFSFLKTLHLKSIISLCPEPYPEENLNFLESNGIKLYQIGIEGEKDNKKEPFVNIPDHSIRKA 139 (249)
T ss_pred ccccccceeecCCCCccchHHHHHhhhheEEEecCCCCChHHHHHHHhcCceEEEEecccccccccCCCCCChHHHHHHH
Confidence 577888999999999999999999999999999987421111136788999999999986431 22 23446667
Q ss_pred HHHHHHHhcCCCeEEEEcCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHhh
Q 019212 153 VDFICENALSRQTTYVHCKAGRGRSTTVVICYLVHHKQMTPDAAYDYVRSI 203 (344)
Q Consensus 153 v~fI~~~~~~g~~VLVHC~~G~gRSgtvvaaYLm~~~g~s~~eAl~~Vr~~ 203 (344)
+.++-. ..+.++||||..|..|+|+++.|.- +.++|++...++..+..
T Consensus 140 l~~lld--~~N~P~Lihc~rGkhRtg~lVgclR-klq~W~lssil~Ey~~f 187 (249)
T KOG1572|consen 140 LKVLLD--KRNYPILIHCKRGKHRTGCLVGCLR-KLQNWSLSSILDEYLRF 187 (249)
T ss_pred HHHHhc--ccCCceEEecCCCCcchhhhHHHHH-HHhccchhHHHHHHHHh
Confidence 766433 3478999999999999999999976 77899988887655443
No 25
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=98.94 E-value=5.6e-09 Score=105.65 Aligned_cols=95 Identities=17% Similarity=0.192 Sum_probs=73.3
Q ss_pred cEEEEEe-cCCCCCCCCHHHHHHHHHHHHHHhcCC---------CeEEEEcCCCCChHHHHHHHHHHHhcCC-CHHHHHH
Q 019212 130 IDHLVIP-TRDYCFAPSLGDICRAVDFICENALSR---------QTTYVHCKAGRGRSTTVVICYLVHHKQM-TPDAAYD 198 (344)
Q Consensus 130 I~yl~iP-v~D~~~~p~~~~l~~~v~fI~~~~~~g---------~~VLVHC~~G~gRSgtvvaaYLm~~~g~-s~~eAl~ 198 (344)
+.++|+. +.|+..++..+.+.++++.++.....+ ...+|||.+|.||||+++++++|...+. ++++.+.
T Consensus 423 V~QFHyTnWPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRTGTFIAi~llk~~~~~sle~IV~ 502 (535)
T PRK15375 423 IPVLHVKNWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRA 502 (535)
T ss_pred EEEEEeCCCCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchHHHHHHHHHHhccccCCHHHHHH
Confidence 3444443 457665666667878877776653211 2247999999999999999999976664 9999999
Q ss_pred HHHhhCCC-CCCCHHHHHHHHHHHHHH
Q 019212 199 YVRSIRPR-VLLASAQWQAVLEYYNLR 224 (344)
Q Consensus 199 ~Vr~~Rp~-i~~~~~q~~~L~~f~~~~ 224 (344)
.+|..|++ ++.+++|+.+|.+....+
T Consensus 503 dlR~qRng~MVQt~eQy~~l~~~~~~~ 529 (535)
T PRK15375 503 DFRNSRNNRMLEDASQFVQLKAMQAQL 529 (535)
T ss_pred HHHhcCCccccccHHHHHHHHHHHHHH
Confidence 99999998 999999999999887443
No 26
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=98.91 E-value=6.1e-09 Score=104.85 Aligned_cols=143 Identities=21% Similarity=0.249 Sum_probs=108.4
Q ss_pred ceeecCcEEEcCCCCCCChh-----------HHHh--cCCcEEEEcCCCCCCCCCcccccccCcEEEEEecCCCCCCCCH
Q 019212 80 WDRVDEFLLLGAVPFPTDVP-----------CLKE--LGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYCFAPSL 146 (344)
Q Consensus 80 ~~~I~~~LylG~~p~a~d~~-----------~Lk~--~GI~~VInL~~~~e~~~~~~~~~~~GI~yl~iPv~D~~~~p~~ 146 (344)
.+-|++.|...++|...... +|.. .|--.|-||+. |..++...+.. +...+++.|+ .+|.+
T Consensus 15 ltYIT~rIIamsfPa~~~es~yRN~l~dV~~fL~s~H~~~y~vyNL~~--er~yd~~~f~g---~V~~~~~~Dh-~~P~L 88 (434)
T KOG2283|consen 15 LTYITSRIIAMSFPAEGIESLYRNNLEDVVLFLDSKHKDHYKVYNLSS--ERLYDPSRFHG---RVARFGFDDH-NPPPL 88 (434)
T ss_pred ceeeeeeEEEEeCCCCcchhhhcCCHHHHHHHHhhccCCceEEEecCc--cccCCcccccc---ceeecCCCCC-CCCcH
Confidence 47799999999999764333 2222 23345788886 33333332322 4446899996 69999
Q ss_pred HHHHHHHHHHHHHhcC--CCeEEEEcCCCCChHHHHHHHHHHHhcCC-CHHHHHHHHHhhC---C--CCCCCHHHHHHHH
Q 019212 147 GDICRAVDFICENALS--RQTTYVHCKAGRGRSTTVVICYLVHHKQM-TPDAAYDYVRSIR---P--RVLLASAQWQAVL 218 (344)
Q Consensus 147 ~~l~~~v~fI~~~~~~--g~~VLVHC~~G~gRSgtvvaaYLm~~~g~-s~~eAl~~Vr~~R---p--~i~~~~~q~~~L~ 218 (344)
+.+..+++-++.++.. ...|.|||++|.+|||+|++|||++.... ++++|+.+.-.+| . .....|+|.++++
T Consensus 89 ~~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~icA~L~~~~~~~ta~eald~~~~kR~~~~~~~~~~~PSq~RYv~ 168 (434)
T KOG2283|consen 89 ELLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGVMICAYLIYSGISATAEEALDYFNEKRFDEGKSKGVTIPSQRRYVG 168 (434)
T ss_pred HHHHHHHHCHHHHHhcCccceEEEEccCCCcceEEEEeHHHHhhhhcCCHHHHHHHHhhhhccccccCCccCchhhHHHH
Confidence 9999999999999876 47899999999999999999999996666 6999999999999 3 3466799999999
Q ss_pred HHHHHHhccc
Q 019212 219 EYYNLRVNMA 228 (344)
Q Consensus 219 ~f~~~~~~~~ 228 (344)
.|..++....
T Consensus 169 Y~~~~l~~~~ 178 (434)
T KOG2283|consen 169 YFSRVLLNGP 178 (434)
T ss_pred HHHHHhhcCC
Confidence 9998654433
No 27
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=98.91 E-value=3.3e-09 Score=93.27 Aligned_cols=110 Identities=19% Similarity=0.249 Sum_probs=60.0
Q ss_pred ecCc-EEEcCCCCC---CChhHHHhcCCcEEEEcCCCCCCC-CCcccccccCcEEEEEecCCCCCCC---C---------
Q 019212 83 VDEF-LLLGAVPFP---TDVPCLKELGVGGVITLNEPYETL-VPTSLYHAHCIDHLVIPTRDYCFAP---S--------- 145 (344)
Q Consensus 83 I~~~-LylG~~p~a---~d~~~Lk~~GI~~VInL~~~~e~~-~~~~~~~~~GI~yl~iPv~D~~~~p---~--------- 145 (344)
|.++ ||.++.+.. .+.+.|+++||++||||..+.|.. .|... ..|++++++|+.+..... .
T Consensus 16 ir~g~lyRS~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~--~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 93 (164)
T PF13350_consen 16 IRPGRLYRSGNLSNLTEADLERLRELGIRTIIDLRSPTERERAPDPL--IDGVQYVHIPIFGDDASSPDKLAELLQSSAD 93 (164)
T ss_dssp S-TTSEEEES--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS------TT-EEEE--SS-S-TTH----------HHH
T ss_pred ecCCcEEecCCcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCC--cCCceeeeecccccccccccccccccccccc
Confidence 4444 999998865 566788999999999998876641 12222 248999999998754331 0
Q ss_pred ----------------HHHHHHHHHHHHHHhcCCCeEEEEcCCCCChHHHHHHHHHHHhcCCCHHHHHH
Q 019212 146 ----------------LGDICRAVDFICENALSRQTTYVHCKAGRGRSTTVVICYLVHHKQMTPDAAYD 198 (344)
Q Consensus 146 ----------------~~~l~~~v~fI~~~~~~g~~VLVHC~~G~gRSgtvvaaYLm~~~g~s~~eAl~ 198 (344)
.+.+.++++.|. ...++||+||++|+.|||.+++..|. ..|++.++.++
T Consensus 94 ~~~~~~~~Y~~~~~~~~~~~~~~~~~l~---~~~~p~l~HC~aGKDRTG~~~alll~-~lGV~~~~I~~ 158 (164)
T PF13350_consen 94 APRGMLEFYREMLESYAEAYRKIFELLA---DAPGPVLFHCTAGKDRTGVVAALLLS-LLGVPDEDIIA 158 (164)
T ss_dssp HHHHHHHHHHHGGGSTHHHHHHHHHHHH----TT--EEEE-SSSSSHHHHHHHHHHH-HTT--HHHHHH
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHhc---cCCCcEEEECCCCCccHHHHHHHHHH-HcCCCHHHHHH
Confidence 111222222222 23479999999999999999987665 58998877764
No 28
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=98.90 E-value=3.1e-09 Score=104.96 Aligned_cols=127 Identities=18% Similarity=0.170 Sum_probs=103.4
Q ss_pred ChhHHHh--cCCcEEEEcCCCCCCCCCcccccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHH----hcCCCeEEEEc
Q 019212 97 DVPCLKE--LGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICEN----ALSRQTTYVHC 170 (344)
Q Consensus 97 d~~~Lk~--~GI~~VInL~~~~e~~~~~~~~~~~GI~yl~iPv~D~~~~p~~~~l~~~v~fI~~~----~~~g~~VLVHC 170 (344)
....|++ .-|..+||++...- .++...++..|+.|+.+.+..+...|..+.+..++..+++. ...++-|+|||
T Consensus 53 l~~~l~~~~~~vgl~iDltnt~r-yy~~~~~~~~g~~Y~K~~c~g~~~vp~~~~v~~fv~~v~~f~~~~~~~~~LI~vhc 131 (393)
T KOG2386|consen 53 LFELLKEHNYKVGLKIDLTNTLR-YYDKPELEERGVKYLKRNCPGRGVVPRTELVDKFVKLVKGFVDDTKLDDELIGVHC 131 (393)
T ss_pred HHHHHHhcCceEEEEEeccceee-eeccccccccceeEEEeccCCcccCCCccchHHHHHHHHHHHhcccCCCCEEEEeC
Confidence 3344554 56788999987533 34556788899999999999987777766666655555443 34579999999
Q ss_pred CCCCChHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHH
Q 019212 171 KAGRGRSTTVVICYLVHHKQMTPDAAYDYVRSIRPRVLLASAQWQAVLEYYNLR 224 (344)
Q Consensus 171 ~~G~gRSgtvvaaYLm~~~g~s~~eAl~~Vr~~Rp~i~~~~~q~~~L~~f~~~~ 224 (344)
.+|.+|+|.++++|||...+|+..+|++.+...||.....+..+..|+..+...
T Consensus 132 thG~NrtgyLI~~yL~~~~~~s~~~aik~f~~~r~~gi~k~dyi~~L~~~~~~~ 185 (393)
T KOG2386|consen 132 THGLNRTGYLICAYLADVGGYSSSEAIKRFADARPPGIEKQDYIDALYSRYHDI 185 (393)
T ss_pred CCcccccceeeeeeeeeccCccHHHHHHHHHHhCCCccCchHHHHHHhhccccc
Confidence 999999999999999999999999999999999999999999999999887533
No 29
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=98.75 E-value=6.1e-08 Score=93.76 Aligned_cols=85 Identities=15% Similarity=0.075 Sum_probs=64.1
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHhc------------CCCeEEEEcCCCCChHHHHHHHHHHH-----hcCCCHHHHHHH
Q 019212 137 TRDYCFAPSLGDICRAVDFICENAL------------SRQTTYVHCKAGRGRSTTVVICYLVH-----HKQMTPDAAYDY 199 (344)
Q Consensus 137 v~D~~~~p~~~~l~~~v~fI~~~~~------------~g~~VLVHC~~G~gRSgtvvaaYLm~-----~~g~s~~eAl~~ 199 (344)
+.|++.+.....+-+++..+++... ..+||+|||.+|.||||++++...+- ...+++.+++..
T Consensus 191 Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtF~aid~~i~~~~~~~~v~v~~~V~~ 270 (303)
T PHA02742 191 WPHGGLPRDPNKFLDFVLAVREADLKADVDIKGENIVKEPPILVHCSAGLDRAGAFCAIDICISKYNERAIIPLLSIVRD 270 (303)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEECCCCCchhHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 3455555566677777666655321 13799999999999999998776542 234589999999
Q ss_pred HHhhCCCCCCCHHHHHHHHHHH
Q 019212 200 VRSIRPRVLLASAQWQAVLEYY 221 (344)
Q Consensus 200 Vr~~Rp~i~~~~~q~~~L~~f~ 221 (344)
+|++|+.++.+..|+.++++--
T Consensus 271 lR~qR~~~Vqt~~QY~F~y~~l 292 (303)
T PHA02742 271 LRKQRHNCLSLPQQYIFCYFIV 292 (303)
T ss_pred HHhhcccccCCHHHHHHHHHHH
Confidence 9999999999999998876544
No 30
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=98.74 E-value=8.1e-08 Score=92.77 Aligned_cols=83 Identities=10% Similarity=0.041 Sum_probs=62.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHh---------cCCCeEEEEcCCCCChHHHHHHHHHH-----HhcCCCHHHHHHHHHhh
Q 019212 138 RDYCFAPSLGDICRAVDFICENA---------LSRQTTYVHCKAGRGRSTTVVICYLV-----HHKQMTPDAAYDYVRSI 203 (344)
Q Consensus 138 ~D~~~~p~~~~l~~~v~fI~~~~---------~~g~~VLVHC~~G~gRSgtvvaaYLm-----~~~g~s~~eAl~~Vr~~ 203 (344)
.|++.+.....|-+++..+++.. ...+||+|||.+|.||||++++...+ ....+++.+++..+|.+
T Consensus 187 Pd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~PIVVHCSaGvGRTGtFcaiDi~l~~~~~~~~vdi~~~V~~lR~q 266 (298)
T PHA02740 187 PADGFSHDPDAFIDFFCNIDDLCADLEKHKADGKIAPIIIDCIDGISSSAVFCVFDICATEFDKTGMLSIANALKKVRQK 266 (298)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEECCCCCchhHHHHHHHHHHHHHHhcCcccHHHHHHHHHhh
Confidence 35555555666666655554321 12479999999999999999876654 23455999999999999
Q ss_pred CCCCCCCHHHHHHHHHH
Q 019212 204 RPRVLLASAQWQAVLEY 220 (344)
Q Consensus 204 Rp~i~~~~~q~~~L~~f 220 (344)
|+.++.+.+|+.++++-
T Consensus 267 R~~~Vqt~~QY~F~y~~ 283 (298)
T PHA02740 267 KYGCMNCLDDYVFCYHL 283 (298)
T ss_pred CccccCCHHHHHHHHHH
Confidence 99999999999988653
No 31
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=98.68 E-value=1.6e-07 Score=85.54 Aligned_cols=84 Identities=18% Similarity=0.193 Sum_probs=65.8
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHh-cCCCeEEEEcCCCCChHHHHHHHHHHH-----hcCCCHHHHHHHHHhhCCCCCCC
Q 019212 137 TRDYCFAPSLGDICRAVDFICENA-LSRQTTYVHCKAGRGRSTTVVICYLVH-----HKQMTPDAAYDYVRSIRPRVLLA 210 (344)
Q Consensus 137 v~D~~~~p~~~~l~~~v~fI~~~~-~~g~~VLVHC~~G~gRSgtvvaaYLm~-----~~g~s~~eAl~~Vr~~Rp~i~~~ 210 (344)
+.|...++....+-++++.+.+.. ...++|+|||..|.||||+++++.++. ...+++.+++..+|++|+++..+
T Consensus 143 W~~~~~P~~~~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~i~~ 222 (235)
T PF00102_consen 143 WPDDGVPPSPESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIEQLKKEGEVDVFEIVKKLRQQRPGAIQS 222 (235)
T ss_dssp SSSSSSGSSSHHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHTTSTTSSSS
T ss_pred ccccccccccchhhhhhhhccccccCCccceEeecccccccccccccchhhccccccccchhhHHHHHHHHhhCCCccCC
Confidence 334333445666667777666665 346899999999999999999988763 23469999999999999999999
Q ss_pred HHHHHHHHHH
Q 019212 211 SAQWQAVLEY 220 (344)
Q Consensus 211 ~~q~~~L~~f 220 (344)
..|+.+++..
T Consensus 223 ~~qy~f~~~~ 232 (235)
T PF00102_consen 223 PEQYRFCYMA 232 (235)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 32
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=98.67 E-value=1.3e-07 Score=91.83 Aligned_cols=80 Identities=14% Similarity=0.160 Sum_probs=60.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhc-----------CCCeEEEEcCCCCChHHHHHHHHHH-----HhcCCCHHHHHHHHH
Q 019212 138 RDYCFAPSLGDICRAVDFICENAL-----------SRQTTYVHCKAGRGRSTTVVICYLV-----HHKQMTPDAAYDYVR 201 (344)
Q Consensus 138 ~D~~~~p~~~~l~~~v~fI~~~~~-----------~g~~VLVHC~~G~gRSgtvvaaYLm-----~~~g~s~~eAl~~Vr 201 (344)
.|+..+.....+.+++..++.... ..+||+|||.+|.||||++++..++ ....+++.+++..+|
T Consensus 193 pd~~~P~~~~~~l~fi~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRtGtfcaidi~i~~l~~~~~v~v~~~V~~lR 272 (312)
T PHA02747 193 FEDETPSDHPDFIKFIKIIDINRKKSGKLFNPKDALLCPIVVHCSDGVGKTGIFCAVDICLNQLVKRKAICLAKTAEKIR 272 (312)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhhccccccccCCCCEEEEecCCCcchhHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 354444455566666555544321 1269999999999999999987643 234569999999999
Q ss_pred hhCCCCCCCHHHHHHH
Q 019212 202 SIRPRVLLASAQWQAV 217 (344)
Q Consensus 202 ~~Rp~i~~~~~q~~~L 217 (344)
.+|+.++.+..|+.++
T Consensus 273 ~qR~~~Vqt~~QY~F~ 288 (312)
T PHA02747 273 EQRHAGIMNFDDYLFI 288 (312)
T ss_pred hccccccCCHHHHHHH
Confidence 9999999999999998
No 33
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=98.65 E-value=9.3e-08 Score=102.77 Aligned_cols=89 Identities=18% Similarity=0.246 Sum_probs=72.5
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHHHHhcC-CCeEEEEcCCCCChHHHHHH----HHHHH-hcCCCHHHHHHHHHhhC
Q 019212 131 DHLVIPTRDYCFAPSLGDICRAVDFICENALS-RQTTYVHCKAGRGRSTTVVI----CYLVH-HKQMTPDAAYDYVRSIR 204 (344)
Q Consensus 131 ~yl~iPv~D~~~~p~~~~l~~~v~fI~~~~~~-g~~VLVHC~~G~gRSgtvva----aYLm~-~~g~s~~eAl~~Vr~~R 204 (344)
+|..|| |++.+....+|.++++.|+..... +-||+|||.+|+||||+++. .||+. ...+++-+.+..+|.+|
T Consensus 1032 QYtaWP--DHg~P~D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~lle~Ne~vdi~divr~mR~QR 1109 (1144)
T KOG0792|consen 1032 QYTAWP--DHGVPDDPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALCLLEHNEPVDILDIVRTMRDQR 1109 (1144)
T ss_pred eecccc--cCCCCCChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 344444 666678888888888888888766 67999999999999999874 34443 34568999999999999
Q ss_pred CCCCCCHHHHHHHHHHH
Q 019212 205 PRVLLASAQWQAVLEYY 221 (344)
Q Consensus 205 p~i~~~~~q~~~L~~f~ 221 (344)
-.++++..|++++++--
T Consensus 1110 ~~mVQT~~QYkFVyevi 1126 (1144)
T KOG0792|consen 1110 AMMVQTLSQYKFVYEVI 1126 (1144)
T ss_pred hhhccchHHhhHHHHHH
Confidence 99999999999998766
No 34
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=98.65 E-value=1.6e-07 Score=91.60 Aligned_cols=84 Identities=17% Similarity=0.219 Sum_probs=63.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhc-------C----CCeEEEEcCCCCChHHHHHHHHHH-----HhcCCCHHHHHHHHH
Q 019212 138 RDYCFAPSLGDICRAVDFICENAL-------S----RQTTYVHCKAGRGRSTTVVICYLV-----HHKQMTPDAAYDYVR 201 (344)
Q Consensus 138 ~D~~~~p~~~~l~~~v~fI~~~~~-------~----g~~VLVHC~~G~gRSgtvvaaYLm-----~~~g~s~~eAl~~Vr 201 (344)
.|+..+.....+-+++..+++... . .+||+|||.+|.||||++++...+ ....+++.+++..+|
T Consensus 211 pd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtfcaid~~l~~l~~~~~vdv~~~V~~lR 290 (323)
T PHA02746 211 PDNGIPTGMAEFLELINKVNEEQAELIKQADNDPQTLGPIVVHCSAGIGRAGTFCAIDNALEQLEKEKEVCLGEIVLKIR 290 (323)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCEEEEcCCCCCcchhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 354445556666666666654321 1 279999999999999999986543 233569999999999
Q ss_pred hhCCCCCCCHHHHHHHHHHH
Q 019212 202 SIRPRVLLASAQWQAVLEYY 221 (344)
Q Consensus 202 ~~Rp~i~~~~~q~~~L~~f~ 221 (344)
.+|+.++.+..|+.++++--
T Consensus 291 ~qR~~~Vqt~~QY~F~y~~l 310 (323)
T PHA02746 291 KQRHSSVFLPEQYAFCYKAL 310 (323)
T ss_pred hcccccCCCHHHHHHHHHHH
Confidence 99999999999999987553
No 35
>PHA02738 hypothetical protein; Provisional
Probab=98.59 E-value=2.8e-07 Score=89.85 Aligned_cols=85 Identities=15% Similarity=0.125 Sum_probs=62.9
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHhc--------------CCCeEEEEcCCCCChHHHHHHHHHH-----HhcCCCHHHHH
Q 019212 137 TRDYCFAPSLGDICRAVDFICENAL--------------SRQTTYVHCKAGRGRSTTVVICYLV-----HHKQMTPDAAY 197 (344)
Q Consensus 137 v~D~~~~p~~~~l~~~v~fI~~~~~--------------~g~~VLVHC~~G~gRSgtvvaaYLm-----~~~g~s~~eAl 197 (344)
+.|+..+.....|.+++..+++... ..+||+|||.+|.||||++++...+ ....+++.+++
T Consensus 187 Wpd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~~~~~~PIVVHCs~GiGRtGtFcaidi~i~~~~~~~~vdv~~~V 266 (320)
T PHA02738 187 WPDHDVPKNTSEFLNFVLEVRQCQKELAQESLQIGHNRLQPPPIVVHCNAGLGRTPCYCVVDISISRFDACATVSIPSIV 266 (320)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHhhhhhcccCccccCCCCeEEEcCCCCChhhhhhHHHHHHHHHHhcCCcCHHHHH
Confidence 3455455556666666666654321 1369999999999999998876643 23345999999
Q ss_pred HHHHhhCCCCCCCHHHHHHHHHHH
Q 019212 198 DYVRSIRPRVLLASAQWQAVLEYY 221 (344)
Q Consensus 198 ~~Vr~~Rp~i~~~~~q~~~L~~f~ 221 (344)
..+|.+|+.++.+..|+.++++--
T Consensus 267 ~~lR~qR~~~vqt~~QY~F~y~~l 290 (320)
T PHA02738 267 SSIRNQRYYSLFIPFQYFFCYRAV 290 (320)
T ss_pred HHHHhhhhhccCCHHHHHHHHHHH
Confidence 999999999999999998876544
No 36
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=98.50 E-value=1.9e-07 Score=81.30 Aligned_cols=64 Identities=30% Similarity=0.419 Sum_probs=49.4
Q ss_pred cccccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEcCCCCChHHHHHHHHHHH
Q 019212 122 TSLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICENALSRQTTYVHCKAGRGRSTTVVICYLVH 187 (344)
Q Consensus 122 ~~~~~~~GI~yl~iPv~D~~~~p~~~~l~~~v~fI~~~~~~g~~VLVHC~~G~gRSgtvvaaYLm~ 187 (344)
....+..|+.|+.+|+.|+ ..|..++|+++++++... ..+..+.+||.+|.|||+|..+.|.|-
T Consensus 85 ~~~~~~~g~~Y~Ripitd~-~~P~~~~iD~fi~~v~~~-p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 85 EELVEGNGLRYYRIPITDH-QAPDPEDIDAFINFVKSL-PKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp HHHHHHTT-EEEEEEE-TT-S---HHHHHHHHHHHHTS--TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred HHHHhcCCceEEEEeCCCc-CCCCHHHHHHHHHHHHhC-CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3456779999999999996 699999999999999988 678899999999999999988888663
No 37
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=98.49 E-value=7.4e-07 Score=77.22 Aligned_cols=116 Identities=18% Similarity=0.176 Sum_probs=79.9
Q ss_pred hHHHhcCCcEEEEcCCCCCC-CCCcccccc--cCcEEEEEecCCCC-CCCCHHHHHHHHHHHHHHhcCCCeEEEEcCCCC
Q 019212 99 PCLKELGVGGVITLNEPYET-LVPTSLYHA--HCIDHLVIPTRDYC-FAPSLGDICRAVDFICENALSRQTTYVHCKAGR 174 (344)
Q Consensus 99 ~~Lk~~GI~~VInL~~~~e~-~~~~~~~~~--~GI~yl~iPv~D~~-~~p~~~~l~~~v~fI~~~~~~g~~VLVHC~~G~ 174 (344)
+...+.|-+++|++...... ..+.....+ ..+.+-.+-..|.+ ..|...++..+++|++++ .+-.++||||.+|+
T Consensus 26 e~~~rh~~t~mlsl~a~~t~~~~pa~~~~erhL~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~w-p~~apllIHC~aGI 104 (172)
T COG5350 26 ETAARHGPTHMLSLLAKGTYFHRPAVIAAERHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEW-PRFAPLLIHCYAGI 104 (172)
T ss_pred HHHhhcCCceEEEeecccccccCccccchhhceeEeeccccCCCccccCCCHHHHHHHHHHHhcC-ccccceeeeecccc
Confidence 44456889999999764322 222221111 11222223223322 567789999999999988 44689999999999
Q ss_pred ChHHHHHH-HHHHHhcCCCHHHHHHHHHhhCCCCCCCHHHHH
Q 019212 175 GRSTTVVI-CYLVHHKQMTPDAAYDYVRSIRPRVLLASAQWQ 215 (344)
Q Consensus 175 gRSgtvva-aYLm~~~g~s~~eAl~~Vr~~Rp~i~~~~~q~~ 215 (344)
|||.+++. +-|.-...|+..+..+.+|..+|.+.||+..+.
T Consensus 105 SRStA~A~i~a~ala~~~de~ela~~Lra~sp~atPN~Rlia 146 (172)
T COG5350 105 SRSTAAALIAALALAPDMDETELAERLRALSPYATPNPRLIA 146 (172)
T ss_pred ccchHHHHHHHHhhccccChHHHHHHHHhcCcccCCChhHHH
Confidence 99976543 234455789999999999999999999986554
No 38
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=98.43 E-value=6.8e-07 Score=84.23 Aligned_cols=129 Identities=16% Similarity=0.158 Sum_probs=83.5
Q ss_pred ceeecCcEEEcCCCCCCChh--HHHhcCCcEEEEcCC--CCCC-CCCccc---ccccCcEEEEEecCCCCCCCCHHHHHH
Q 019212 80 WDRVDEFLLLGAVPFPTDVP--CLKELGVGGVITLNE--PYET-LVPTSL---YHAHCIDHLVIPTRDYCFAPSLGDICR 151 (344)
Q Consensus 80 ~~~I~~~LylG~~p~a~d~~--~Lk~~GI~~VInL~~--~~e~-~~~~~~---~~~~GI~yl~iPv~D~~~~p~~~~l~~ 151 (344)
...+..-.|+++.|.+.+.. ....+++..++++.. +... ...... ....++....++.... .....+.+.+
T Consensus 48 ~~i~~~~~~Rs~~p~~~~~~~~~~~~~~l~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~ 126 (249)
T COG2365 48 LGIIPIIDYRSGQPVPVQPDPELLDALYLKTIINLRDESNTNVELYTDHLINWDKAAIIMFESYRSFPT-REDAAERLVE 126 (249)
T ss_pred ccccceeEcCCCCcccccCCccccccccccccccccccchhhhhhhhhhhhhhccccchhhhhhccCcc-chhhHHHHHH
Confidence 35566678999999998777 667799999999986 2111 111111 1122233333332221 2333444555
Q ss_pred HHHHHHHHhcCCCeEEEEcCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCCCH
Q 019212 152 AVDFICENALSRQTTYVHCKAGRGRSTTVVICYLVHHKQMTPDAAYDYVRSIRPRVLLAS 211 (344)
Q Consensus 152 ~v~fI~~~~~~g~~VLVHC~~G~gRSgtvvaaYLm~~~g~s~~eAl~~Vr~~Rp~i~~~~ 211 (344)
.+..+... +++|||+||.+|..|||.++++|+....+.....+-+++...++......
T Consensus 127 ~~~l~~~~--e~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~~~~~~~ 184 (249)
T COG2365 127 LLQLLADA--ENGPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGEPERR 184 (249)
T ss_pred HHHHHhhc--ccCCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCccchhhH
Confidence 54444332 24899999999999999999999999777777777888888887655544
No 39
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.37 E-value=6.7e-07 Score=83.81 Aligned_cols=92 Identities=22% Similarity=0.245 Sum_probs=62.5
Q ss_pred cEEEEEe-cCCCCCCCCHHHHHHHHHHHHHHh---cCCCeEEEEcCCCCChHHHHHHHHHHHhcCC-C------------
Q 019212 130 IDHLVIP-TRDYCFAPSLGDICRAVDFICENA---LSRQTTYVHCKAGRGRSTTVVICYLVHHKQM-T------------ 192 (344)
Q Consensus 130 I~yl~iP-v~D~~~~p~~~~l~~~v~fI~~~~---~~g~~VLVHC~~G~gRSgtvvaaYLm~~~g~-s------------ 192 (344)
|.|++.+ +.|. ..| .+.+..++++... ...++++|||.+|.|||||+++.-.+...-- +
T Consensus 185 Ihhf~y~nW~D~-~~p---~i~sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ll~~~~~~~~~t~~~~~t~D 260 (302)
T COG5599 185 IHHFQYINWVDF-NVP---DIRSLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILLRMPNDTLNHTDTWEDTQD 260 (302)
T ss_pred EEEEEecCcccc-CCc---CHHHHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHHHhccccccCCCchhhhhhh
Confidence 3444443 3353 445 4444455554443 2468999999999999999998775543321 1
Q ss_pred -HHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh
Q 019212 193 -PDAAYDYVRSIRPRVLLASAQWQAVLEYYNLRV 225 (344)
Q Consensus 193 -~~eAl~~Vr~~Rp~i~~~~~q~~~L~~f~~~~~ 225 (344)
..+.+..+|++|-.++.|..|+.+|++-...+.
T Consensus 261 ~if~iV~~LRsQRmkmVQn~~Qf~flY~~~~~l~ 294 (302)
T COG5599 261 LIFQIVLSLRSQRMKMVQNKTQFKFLYDAFLELN 294 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 345667889999999999999999987775444
No 40
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=98.37 E-value=1.1e-06 Score=87.23 Aligned_cols=121 Identities=21% Similarity=0.294 Sum_probs=75.9
Q ss_pred ChhHHHhcCCcEEEEcCCCCCCCCC------ccccc------ccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHH---hc
Q 019212 97 DVPCLKELGVGGVITLNEPYETLVP------TSLYH------AHCIDHLVIPTRDYCFAPSLGDICRAVDFICEN---AL 161 (344)
Q Consensus 97 d~~~Lk~~GI~~VInL~~~~e~~~~------~~~~~------~~GI~yl~iPv~D~~~~p~~~~l~~~v~fI~~~---~~ 161 (344)
+...++++|+-.|=|+.+.....+. ...+. --..+|+.|| |++.+...--+..+++-++.. +.
T Consensus 372 ee~~~e~~G~~~v~~v~E~~t~dY~LR~l~vs~~~~g~~~R~I~~yh~~tWP--DHGvP~dPg~vLnFLe~V~~rq~~l~ 449 (600)
T KOG0790|consen 372 EEGALEEYGVMRVRNVKESDTHDYTLRELKVSKLGNGNLEREIWHYHYLTWP--DHGVPSDPGGVLNFLEEVNHRQESLM 449 (600)
T ss_pred cccchhhcCceEEEeccccccccceehheeeccccCCcchhhhhhhheeecc--cCCCcCCccHHHHHHHHhhhhhcccc
Confidence 4556778898888887553211100 00011 1123444555 554444333444444444332 22
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHH-H---HhcC----CCHHHHHHHHHhhCCCCCCCHHHHHHHHH
Q 019212 162 SRQTTYVHCKAGRGRSTTVVICYL-V---HHKQ----MTPDAAYDYVRSIRPRVLLASAQWQAVLE 219 (344)
Q Consensus 162 ~g~~VLVHC~~G~gRSgtvvaaYL-m---~~~g----~s~~eAl~~Vr~~Rp~i~~~~~q~~~L~~ 219 (344)
..++|.|||.+|+|||||+++.-+ | +..| +++...+++||++|..++.++.|+++++.
T Consensus 450 ~AgpIvVHCSAGIGrTGTfiViD~lld~I~~~Gldc~iDi~ktIqmVRsqRSGmVQTEaQYkFiY~ 515 (600)
T KOG0790|consen 450 DAGPIVVHCSAGIGRTGTFIVIDMLLDQIREKGLDCDIDIQKTIQMVRSQRSGMVQTEAQYKFIYV 515 (600)
T ss_pred ccCcEEEEccCCcCCcceEEEhHHHHHHHHhcCCCCcccHHHHHHHHHHHhcchhhhHHhHHHHHH
Confidence 357999999999999999765432 2 3344 57999999999999999999999998753
No 41
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.95 E-value=3.4e-05 Score=80.36 Aligned_cols=88 Identities=22% Similarity=0.290 Sum_probs=63.8
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHHHHhcC-CCeEEEEcCCCCChHHHHHHHHHHH------hcCCCHHHHHHHHHhh
Q 019212 131 DHLVIPTRDYCFAPSLGDICRAVDFICENALS-RQTTYVHCKAGRGRSTTVVICYLVH------HKQMTPDAAYDYVRSI 203 (344)
Q Consensus 131 ~yl~iPv~D~~~~p~~~~l~~~v~fI~~~~~~-g~~VLVHC~~G~gRSgtvvaaYLm~------~~g~s~~eAl~~Vr~~ 203 (344)
.|+.|| +...+-+...+.++-+.+++.... ..+|+|||..|.||||+.++.-++. .+.++....++++|.+
T Consensus 896 HfLSWp--~egvPasarslLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~YiliDmvl~Rm~kGakeIDIaATlEHlRDQ 973 (1004)
T KOG0793|consen 896 HFLSWP--DEGVPASARSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYILIDMVLNRMAKGAKEIDIAATLEHLRDQ 973 (1004)
T ss_pred eeeccc--ccCCccchHHHHHHHHHhhhhccCCCCceEEEccCCCCccceeeeHHHHHHHHhccchhhhHHHHHHHHhhc
Confidence 444444 434455566666776777766542 4799999999999999976554432 1235888889999999
Q ss_pred CCCCCCCHHHHHHHHHH
Q 019212 204 RPRVLLASAQWQAVLEY 220 (344)
Q Consensus 204 Rp~i~~~~~q~~~L~~f 220 (344)
||+++-+..|+++...-
T Consensus 974 R~GmVaTkdQFef~l~a 990 (1004)
T KOG0793|consen 974 RPGMVATKDQFEFALTA 990 (1004)
T ss_pred CCcceeehhhhHHHHHH
Confidence 99999999999887643
No 42
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=97.85 E-value=7.2e-05 Score=73.17 Aligned_cols=89 Identities=19% Similarity=0.232 Sum_probs=64.6
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHHHHhcC-CCeEEEEcCCCCChHHHHHHHHHH-Hhc----CCCHHHHHHHHHhhC
Q 019212 131 DHLVIPTRDYCFAPSLGDICRAVDFICENALS-RQTTYVHCKAGRGRSTTVVICYLV-HHK----QMTPDAAYDYVRSIR 204 (344)
Q Consensus 131 ~yl~iPv~D~~~~p~~~~l~~~v~fI~~~~~~-g~~VLVHC~~G~gRSgtvvaaYLm-~~~----g~s~~eAl~~Vr~~R 204 (344)
.|..|| |+..+.....+.++++-..+.... .++++|||.+|.|||||+++.--+ +.. -.+....+..+|+.|
T Consensus 256 ~y~~wP--d~gvp~~~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald~LLqq~~~~~~vdi~~iv~~lR~~R 333 (374)
T KOG0791|consen 256 HYTAWP--DFGVPSSTESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALDRLLQQIDSEETVDIFGVVLELRSAR 333 (374)
T ss_pred EEeecc--ccCCCCCchhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHHHHHHHhcccccccHHHHHHHhhhcc
Confidence 444455 654444445566666655555443 589999999999999999987643 222 236777788889999
Q ss_pred CCCCCCHHHHHHHHHHH
Q 019212 205 PRVLLASAQWQAVLEYY 221 (344)
Q Consensus 205 p~i~~~~~q~~~L~~f~ 221 (344)
+.++++..|+-+|.+--
T Consensus 334 ~~mVqte~Qyvfl~~c~ 350 (374)
T KOG0791|consen 334 MLMVQTEDQYVFLHQCV 350 (374)
T ss_pred ccccchHHHHHHHHHHH
Confidence 99999999999998765
No 43
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.82 E-value=8.1e-05 Score=74.13 Aligned_cols=60 Identities=23% Similarity=0.335 Sum_probs=47.4
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHH-HHh--c---CCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHH
Q 019212 162 SRQTTYVHCKAGRGRSTTVVICYL-VHH--K---QMTPDAAYDYVRSIRPRVLLASAQWQAVLEYY 221 (344)
Q Consensus 162 ~g~~VLVHC~~G~gRSgtvvaaYL-m~~--~---g~s~~eAl~~Vr~~Rp~i~~~~~q~~~L~~f~ 221 (344)
..+++.|||.+|.|||||+++... +.. . ..+..+.+..+|.+|+.++.+..|+.+++.-.
T Consensus 298 ~~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~iR~qR~~~vqt~~Qy~f~~~~~ 363 (415)
T KOG0789|consen 298 KQEPIEVHCSAGAGRAGTLVLIEHALIELQGPEGEPPIDEILREIRYQRPGAVQSPLQYLFIYAAT 363 (415)
T ss_pred CCCCeEEECCCCCCccchHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhcccchhHHHHHHHHH
Confidence 358999999999999999997552 211 2 23588888999999999999999987776544
No 44
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=97.78 E-value=0.00026 Score=72.13 Aligned_cols=135 Identities=16% Similarity=0.112 Sum_probs=97.0
Q ss_pred eecCcEEEcCCCCCCChh----HHHhcCCcEEEEcCCCCCCCCCcccccccCcEEEEEecCCCCC--CCCHHHHHHHHHH
Q 019212 82 RVDEFLLLGAVPFPTDVP----CLKELGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYCF--APSLGDICRAVDF 155 (344)
Q Consensus 82 ~I~~~LylG~~p~a~d~~----~Lk~~GI~~VInL~~~~e~~~~~~~~~~~GI~yl~iPv~D~~~--~p~~~~l~~~v~f 155 (344)
.++.+||+|.....-... .-....+..||++.+..... .-......++++|+...-. -.+-..+++++.|
T Consensus 291 ~~~~~i~ig~~~~~l~~~~~~~~~~~~~~~~vI~~s~~~~~~----~~~~~~~~~L~l~i~~~K~gs~~LR~~LP~i~~f 366 (451)
T PF04179_consen 291 PGTTGIYIGKISSNLAISKAQLPDLESEFDCVINCSESPTPK----ESWPKSPKYLHLPIPSSKKGSRDLRKALPKICSF 366 (451)
T ss_pred cCCCCeEEeccCCccccchhhccccCCCcCEEEEcCCCcccc----cccCCCceEEeCcCCCCcccHHHHHHHHHHHHHH
Confidence 346799999988632111 11235678899998653211 1123456888899876422 2345778899999
Q ss_pred HHHHhcC--CCeEEEEcCCCCChHHHHHHHHHHHhcCCC----------------HHHHHHHHHhhCCCCCCCHHHHHHH
Q 019212 156 ICENALS--RQTTYVHCKAGRGRSTTVVICYLVHHKQMT----------------PDAAYDYVRSIRPRVLLASAQWQAV 217 (344)
Q Consensus 156 I~~~~~~--g~~VLVHC~~G~gRSgtvvaaYLm~~~g~s----------------~~eAl~~Vr~~Rp~i~~~~~q~~~L 217 (344)
+...+.. +++|+|+|..|...|..++.|.|+..+.-+ ..+-+..|-+.+|.+.|+...++.+
T Consensus 367 v~~~L~~~~~~~iLV~C~sGkDlSVgVaLaILc~~Fd~~g~~~~~~~~~~itK~~IR~rL~~I~~~~p~aNPSRaTLqsV 446 (451)
T PF04179_consen 367 VRSHLSSDPGKPILVCCDSGKDLSVGVALAILCKLFDDDGNFRDSFERPSITKDDIRQRLAWIISSRPDANPSRATLQSV 446 (451)
T ss_pred HHHHhcccCCCcEEEEcCCcchHHHHHHHHHHHHhcCcccCcccccccCCCCHHHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 9998887 899999999999999999999998766431 3445667777888888888888888
Q ss_pred HHH
Q 019212 218 LEY 220 (344)
Q Consensus 218 ~~f 220 (344)
..|
T Consensus 447 NsF 449 (451)
T PF04179_consen 447 NSF 449 (451)
T ss_pred HHh
Confidence 776
No 45
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.18 E-value=0.00054 Score=75.01 Aligned_cols=69 Identities=17% Similarity=0.219 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhcC----CCeEEEEcCCCCChHHHHHHH-----HHHHhcCCCHHHHHHHHHhhCCCCCCCHHHHHHHH
Q 019212 150 CRAVDFICENALS----RQTTYVHCKAGRGRSTTVVIC-----YLVHHKQMTPDAAYDYVRSIRPRVLLASAQWQAVL 218 (344)
Q Consensus 150 ~~~v~fI~~~~~~----g~~VLVHC~~G~gRSgtvvaa-----YLm~~~g~s~~eAl~~Vr~~Rp~i~~~~~q~~~L~ 218 (344)
..++.|+++.... .++++|||.+|.||||+.++. .+......+...-+..+|.+|+.++.+.+|+-+++
T Consensus 713 t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi~iDaml~~~~~e~~vdiy~~v~~lR~QR~~mVQt~eQYiFi~ 790 (1087)
T KOG4228|consen 713 TGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFIVIDAMLDRLECEGKVDIYGHVKTLRRQRNNMVQTEEQYIFIH 790 (1087)
T ss_pred hHHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEEEeHHHHHHHHhhCccceechhHHHHhccccccccHHHHHHHH
Confidence 3445555554432 389999999999999997632 23344455888889999999999999999987764
No 46
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.11 E-value=0.00077 Score=73.87 Aligned_cols=59 Identities=22% Similarity=0.295 Sum_probs=50.3
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHH----HhcCC-CHHHHHHHHHhhCCCCCCCHHHHHHHHHHH
Q 019212 163 RQTTYVHCKAGRGRSTTVVICYLV----HHKQM-TPDAAYDYVRSIRPRVLLASAQWQAVLEYY 221 (344)
Q Consensus 163 g~~VLVHC~~G~gRSgtvvaaYLm----~~~g~-s~~eAl~~Vr~~Rp~i~~~~~q~~~L~~f~ 221 (344)
.+++.|||..|.+|||+++++-++ +..+. ++.++.+.+|..||.++-+.+|++++++-.
T Consensus 1018 ~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~~e~~vDVfq~vk~Lr~~rp~mv~t~~QY~fcYdv~ 1081 (1087)
T KOG4228|consen 1018 DGPIIVHCLNGVGRTGTFCAISILLERMRKEGVVDVFQTVKTLRFQRPGMVDTSDQYQFCYDVA 1081 (1087)
T ss_pred CCCEEEEEcCCCcceeehHHHHHHHHHHhhcCceeeehhhhhhhhcCccccCcHHHHHHHHHHH
Confidence 689999999999999998876543 44444 999999999999999999999999987644
No 47
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=95.54 E-value=0.025 Score=49.01 Aligned_cols=68 Identities=22% Similarity=0.323 Sum_probs=45.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhcC---CCeEEEEcCCCCCh----HHHHHHHHHHHhcCCCHHHHHHHHHhhCCC
Q 019212 138 RDYCFAPSLGDICRAVDFICENALS---RQTTYVHCKAGRGR----STTVVICYLVHHKQMTPDAAYDYVRSIRPR 206 (344)
Q Consensus 138 ~D~~~~p~~~~l~~~v~fI~~~~~~---g~~VLVHC~~G~gR----SgtvvaaYLm~~~g~s~~eAl~~Vr~~Rp~ 206 (344)
.|+ .+..+.++-+.+..+++.++. .++.+|||.....+ ++.+++||+|-+.+||+++|++.+...-|.
T Consensus 39 ~DF-GPlnL~~lyrfc~~l~~~L~~~~~~~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~spe~A~~~l~~~~p~ 113 (141)
T PF14671_consen 39 ADF-GPLNLAQLYRFCCKLNKKLKSPELKKKKIVHYTSSDPKKRANAAFLIGAYAVIYLGMSPEEAYKPLASIQPP 113 (141)
T ss_dssp S-------HHHHHHHHHHHHHHHH-GGGTTSEEEEEE-S-HHHHHHHHHHHHHHHHHTS---HHHHHHHHTTTT--
T ss_pred CcC-CCccHHHHHHHHHHHHHHHcCHHhcCCeEEEECCCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCCC
Confidence 354 477788888888888888766 57888998876654 477899999999999999999999877543
No 48
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.20 E-value=0.63 Score=48.73 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=21.0
Q ss_pred HHHhcCCCeEEEEcCCCCChHHHHHHH
Q 019212 157 CENALSRQTTYVHCKAGRGRSTTVVIC 183 (344)
Q Consensus 157 ~~~~~~g~~VLVHC~~G~gRSgtvvaa 183 (344)
++....+.+|||||..|..||+-+++.
T Consensus 368 ~kVe~~~~sVlVHCSDGWDRT~QlvsL 394 (717)
T KOG4471|consen 368 DKVESESRSVLVHCSDGWDRTAQLVSL 394 (717)
T ss_pred HHHhcCCceEEEEcCCCccchHHHHHH
Confidence 333345789999999999999887753
No 49
>PLN02160 thiosulfate sulfurtransferase
Probab=87.73 E-value=1.2 Score=37.94 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=20.4
Q ss_pred hcCCCeEEEEcCCCCChHHHHHHHHHHHhcCCC
Q 019212 160 ALSRQTTYVHCKAGRGRSTTVVICYLVHHKQMT 192 (344)
Q Consensus 160 ~~~g~~VLVHC~~G~gRSgtvvaaYLm~~~g~s 192 (344)
+..+++|++||..| .||...+.. +...|.+
T Consensus 78 ~~~~~~IivyC~sG-~RS~~Aa~~--L~~~G~~ 107 (136)
T PLN02160 78 LNPADDILVGCQSG-ARSLKATTE--LVAAGYK 107 (136)
T ss_pred cCCCCcEEEECCCc-HHHHHHHHH--HHHcCCC
Confidence 35578999999999 588765433 3445653
No 50
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=83.84 E-value=6.7 Score=30.85 Aligned_cols=29 Identities=21% Similarity=0.448 Sum_probs=19.6
Q ss_pred cCCCeEEEEcCCCCChHHHHHHHHHHHhcCCC
Q 019212 161 LSRQTTYVHCKAGRGRSTTVVICYLVHHKQMT 192 (344)
Q Consensus 161 ~~g~~VLVHC~~G~gRSgtvvaaYLm~~~g~s 192 (344)
..+++|+|+|..| .||...+ .+| ...|.+
T Consensus 59 ~~~~~ivvyC~~G-~rs~~a~-~~L-~~~G~~ 87 (101)
T cd01518 59 LKGKKVLMYCTGG-IRCEKAS-AYL-KERGFK 87 (101)
T ss_pred cCCCEEEEECCCc-hhHHHHH-HHH-HHhCCc
Confidence 4578999999988 5886543 344 445653
No 51
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=83.27 E-value=2.7 Score=41.76 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=17.7
Q ss_pred cCCCeEEEEcCCCCChHHHHHHH
Q 019212 161 LSRQTTYVHCKAGRGRSTTVVIC 183 (344)
Q Consensus 161 ~~g~~VLVHC~~G~gRSgtvvaa 183 (344)
.++..|||||..|..||+-++..
T Consensus 229 ~~~~~Vlvh~~dGwDrt~q~~sL 251 (353)
T PF06602_consen 229 DEGSSVLVHCSDGWDRTSQLSSL 251 (353)
T ss_dssp TT--EEEEECTTSSSHHHHHHHH
T ss_pred ccCceEEEEcCCCCcccHHHHHH
Confidence 46899999999999999776653
No 52
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=81.51 E-value=4.4 Score=31.89 Aligned_cols=69 Identities=19% Similarity=0.157 Sum_probs=39.1
Q ss_pred HhcCCcEEEEcCCCCCCCCCcccccc-cCcE-EEEEecCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEcCCCCChHHH
Q 019212 102 KELGVGGVITLNEPYETLVPTSLYHA-HCID-HLVIPTRDYCFAPSLGDICRAVDFICENALSRQTTYVHCKAGRGRSTT 179 (344)
Q Consensus 102 k~~GI~~VInL~~~~e~~~~~~~~~~-~GI~-yl~iPv~D~~~~p~~~~l~~~v~fI~~~~~~g~~VLVHC~~G~gRSgt 179 (344)
...+-..+|++.++.+. +. +-.. ..++|+.+...... ... ....++++|+|..|. ||..
T Consensus 16 ~~~~~~~liDvR~~~e~-------~~~~i~~~~~~ip~~~~~~~~~--~~~---------~~~~~~ivv~C~~G~-rS~~ 76 (110)
T COG0607 16 LAGEDAVLLDVREPEEY-------ERGHIPGAAINIPLSELKAAEN--LLE---------LPDDDPIVVYCASGV-RSAA 76 (110)
T ss_pred hccCCCEEEeccChhHh-------hhcCCCcceeeeecccchhhhc--ccc---------cCCCCeEEEEeCCCC-ChHH
Confidence 34455689999876332 11 1222 56777776421100 000 456899999999996 7755
Q ss_pred HHHHHHHHhcCC
Q 019212 180 VVICYLVHHKQM 191 (344)
Q Consensus 180 vvaaYLm~~~g~ 191 (344)
.+. +|.. .|.
T Consensus 77 aa~-~L~~-~G~ 86 (110)
T COG0607 77 AAA-ALKL-AGF 86 (110)
T ss_pred HHH-HHHH-cCC
Confidence 444 4444 444
No 53
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=78.98 E-value=3.4 Score=43.43 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=24.2
Q ss_pred HHHHHHHHHhc-CCCeEEEEcCCCCChHHHHHHH
Q 019212 151 RAVDFICENAL-SRQTTYVHCKAGRGRSTTVVIC 183 (344)
Q Consensus 151 ~~v~fI~~~~~-~g~~VLVHC~~G~gRSgtvvaa 183 (344)
+...+|.+++. +|-+|||||..|..||.-|+..
T Consensus 331 ~~a~~ia~~l~~~~~sVlvhcsdGwDrT~qV~SL 364 (573)
T KOG1089|consen 331 KAAAEIAKCLSSEGASVLVHCSDGWDRTCQVSSL 364 (573)
T ss_pred HHHHHHHHHHHhCCCeEEEEccCCcchhHHHHHH
Confidence 33344555555 4589999999999999887753
No 54
>PRK01415 hypothetical protein; Validated
Probab=65.14 E-value=12 Score=35.51 Aligned_cols=29 Identities=17% Similarity=0.230 Sum_probs=19.8
Q ss_pred cCCCeEEEEcCCCCChHHHHHHHHHHHhcCCC
Q 019212 161 LSRQTTYVHCKAGRGRSTTVVICYLVHHKQMT 192 (344)
Q Consensus 161 ~~g~~VLVHC~~G~gRSgtvvaaYLm~~~g~s 192 (344)
..+++|+++|+.|. ||..+ +++|.. .|.+
T Consensus 169 ~k~k~Iv~yCtgGi-Rs~kA-a~~L~~-~Gf~ 197 (247)
T PRK01415 169 LKGKKIAMVCTGGI-RCEKS-TSLLKS-IGYD 197 (247)
T ss_pred cCCCeEEEECCCCh-HHHHH-HHHHHH-cCCC
Confidence 45789999999884 87544 455544 5553
No 55
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=62.92 E-value=16 Score=35.62 Aligned_cols=28 Identities=14% Similarity=0.390 Sum_probs=19.4
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHHhcCCC
Q 019212 162 SRQTTYVHCKAGRGRSTTVVICYLVHHKQMT 192 (344)
Q Consensus 162 ~g~~VLVHC~~G~gRSgtvvaaYLm~~~g~s 192 (344)
.+++|+|||..|. ||.. ++.||.. .|.+
T Consensus 170 kdk~IvvyC~~G~-Rs~~-aa~~L~~-~Gf~ 197 (314)
T PRK00142 170 KDKKVVMYCTGGI-RCEK-ASAWMKH-EGFK 197 (314)
T ss_pred CcCeEEEECCCCc-HHHH-HHHHHHH-cCCC
Confidence 4689999999885 8854 4555554 5553
No 56
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=61.81 E-value=21 Score=28.36 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=18.0
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHHhcCC
Q 019212 162 SRQTTYVHCKAGRGRSTTVVICYLVHHKQM 191 (344)
Q Consensus 162 ~g~~VLVHC~~G~gRSgtvvaaYLm~~~g~ 191 (344)
.+++|+|||..|. ||.. ++..| +..|.
T Consensus 65 ~~~~ivv~C~~G~-rs~~-a~~~L-~~~G~ 91 (109)
T cd01533 65 PRTPIVVNCAGRT-RSII-GAQSL-INAGL 91 (109)
T ss_pred CCCeEEEECCCCc-hHHH-HHHHH-HHCCC
Confidence 3579999999996 7744 33333 44665
No 57
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=59.81 E-value=9.5 Score=36.02 Aligned_cols=81 Identities=14% Similarity=0.137 Sum_probs=53.7
Q ss_pred cEEEcCC-CCCCChhHHHhcCCcEEEEcCCCCCCCCC---cccccccCcEEEEEecCCCCC-----CCCHHHHHHHHHHH
Q 019212 86 FLLLGAV-PFPTDVPCLKELGVGGVITLNEPYETLVP---TSLYHAHCIDHLVIPTRDYCF-----APSLGDICRAVDFI 156 (344)
Q Consensus 86 ~LylG~~-p~a~d~~~Lk~~GI~~VInL~~~~e~~~~---~~~~~~~GI~yl~iPv~D~~~-----~p~~~~l~~~v~fI 156 (344)
.+..|++ ....-.+++++++|+.|||.+.++-.... ....+..||.|+.+-=..... --..++++++++.+
T Consensus 46 ~v~~G~lg~~~~l~~~l~~~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~eRp~~~~~~~~~~~~v~~~~eA~~~l 125 (249)
T PF02571_consen 46 EVRVGRLGDEEGLAEFLRENGIDAVIDATHPFAAEISQNAIEACRELGIPYLRFERPSWQPEPDDNWHYVDSYEEAAELL 125 (249)
T ss_pred eEEECCCCCHHHHHHHHHhCCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEEEcCCcccCCCCeEEEeCCHHHHHHHH
Confidence 5788888 44455577889999999999998654221 125667899998875333211 22356677888877
Q ss_pred HHHhcCCCeEEE
Q 019212 157 CENALSRQTTYV 168 (344)
Q Consensus 157 ~~~~~~g~~VLV 168 (344)
.+. .+++||.
T Consensus 126 ~~~--~~~~ifl 135 (249)
T PF02571_consen 126 KEL--GGGRIFL 135 (249)
T ss_pred hhc--CCCCEEE
Confidence 544 2377777
No 58
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=59.70 E-value=22 Score=28.74 Aligned_cols=31 Identities=16% Similarity=-0.024 Sum_probs=20.5
Q ss_pred hcCCCeEEEEcCCCCChHHHHHHHHHHHhcCCC
Q 019212 160 ALSRQTTYVHCKAGRGRSTTVVICYLVHHKQMT 192 (344)
Q Consensus 160 ~~~g~~VLVHC~~G~gRSgtvvaaYLm~~~g~s 192 (344)
...+.+|+|+|..| +++++.++.+| +..|++
T Consensus 76 ~~~~~~vv~~c~~g-~~~a~~~~~~l-~~~G~~ 106 (122)
T cd01448 76 ISNDDTVVVYDDGG-GFFAARAWWTL-RYFGHE 106 (122)
T ss_pred CCCCCEEEEECCCC-CccHHHHHHHH-HHcCCC
Confidence 34578999999998 55555555444 445654
No 59
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=57.27 E-value=26 Score=29.02 Aligned_cols=31 Identities=16% Similarity=0.296 Sum_probs=21.8
Q ss_pred hcCCCeEEEEcCCCCChHHHHHHHHHHHhcCCC
Q 019212 160 ALSRQTTYVHCKAGRGRSTTVVICYLVHHKQMT 192 (344)
Q Consensus 160 ~~~g~~VLVHC~~G~gRSgtvvaaYLm~~~g~s 192 (344)
+..+++|+|+|..|-.||..++ ++++..|.+
T Consensus 83 i~~~~~vvvyC~~~G~rs~~a~--~~L~~~G~~ 113 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQSLA--WLLESLGID 113 (128)
T ss_pred cCCCCeEEEEeCCCCccHHHHH--HHHHHcCCc
Confidence 4557899999986656776444 667766763
No 60
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=56.08 E-value=44 Score=29.21 Aligned_cols=29 Identities=10% Similarity=-0.162 Sum_probs=20.8
Q ss_pred cCCCeEEEEcCCCCChHHHHHHHHHHHhcCC
Q 019212 161 LSRQTTYVHCKAGRGRSTTVVICYLVHHKQM 191 (344)
Q Consensus 161 ~~g~~VLVHC~~G~gRSgtvvaaYLm~~~g~ 191 (344)
..+++|+|+|..|..||.. ++++++..|.
T Consensus 114 ~~d~~IVvYC~~G~~~S~~--aa~~L~~~G~ 142 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWN--AAKRALAYGY 142 (162)
T ss_pred CCCCEEEEEECCCCHHHHH--HHHHHHhcCC
Confidence 3578999999998878876 3445555565
No 61
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=55.75 E-value=26 Score=34.13 Aligned_cols=91 Identities=18% Similarity=0.213 Sum_probs=55.8
Q ss_pred ecCcEEEcCCCCCCChhHHHhcCCcEEEEcCCCCCCCCCcccccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHhc-
Q 019212 83 VDEFLLLGAVPFPTDVPCLKELGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICENAL- 161 (344)
Q Consensus 83 I~~~LylG~~p~a~d~~~Lk~~GI~~VInL~~~~e~~~~~~~~~~~GI~yl~iPv~D~~~~p~~~~l~~~v~fI~~~~~- 161 (344)
|.|.-.+|....+.+...+-.-.=+.|||..+.+|.... .+ .....|..+.|.++-.++.+...
T Consensus 105 v~p~~~vG~yl~p~~wn~~l~D~~~vviDtRN~YE~~iG--~F-------------~gAv~p~~~tFrefP~~v~~~~~~ 169 (308)
T COG1054 105 VDPLENVGTYLSPKDWNELLSDPDVVVIDTRNDYEVAIG--HF-------------EGAVEPDIETFREFPAWVEENLDL 169 (308)
T ss_pred cCccccccCccCHHHHHHHhcCCCeEEEEcCcceeEeee--ee-------------cCccCCChhhhhhhHHHHHHHHHh
Confidence 666556666666666655444333788888877653111 11 11345677788888888876653
Q ss_pred -CCCeEEEEcCCCCChHHHHHHHHHHHhcCC
Q 019212 162 -SRQTTYVHCKAGRGRSTTVVICYLVHHKQM 191 (344)
Q Consensus 162 -~g~~VLVHC~~G~gRSgtvvaaYLm~~~g~ 191 (344)
++++|...|+.|+ |.=-. .+||.. .|+
T Consensus 170 ~~~KkVvmyCTGGI-RCEKa-s~~m~~-~GF 197 (308)
T COG1054 170 LKDKKVVMYCTGGI-RCEKA-SAWMKE-NGF 197 (308)
T ss_pred ccCCcEEEEcCCce-eehhh-HHHHHH-hcc
Confidence 4789999999998 65332 334443 443
No 62
>PRK05569 flavodoxin; Provisional
Probab=55.47 E-value=96 Score=25.70 Aligned_cols=90 Identities=6% Similarity=-0.120 Sum_probs=52.8
Q ss_pred cCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEcCCCCC-hHHHHHHHHHHHhcCCCHHHHHHHHHhhCCC
Q 019212 128 HCIDHLVIPTRDYCFAPSLGDICRAVDFICENALSRQTTYVHCKAGRG-RSTTVVICYLVHHKQMTPDAAYDYVRSIRPR 206 (344)
Q Consensus 128 ~GI~yl~iPv~D~~~~p~~~~l~~~v~fI~~~~~~g~~VLVHC~~G~g-RSgtvvaaYLm~~~g~s~~eAl~~Vr~~Rp~ 206 (344)
...-.+-.|+.... ......+..+++.+.....+++++.+.+..|.+ ..+.-.+.-++...|+..-..+ .-.
T Consensus 49 ~d~iilgsPty~~~-~~~~~~~~~~~~~l~~~~~~~K~v~~f~t~g~~~~~~~~~~~~~l~~~g~~~~~~~------~~~ 121 (141)
T PRK05569 49 ADAVAFGSPSMDNN-NIEQEEMAPFLDQFKLTPNENKKCILFGSYGWDNGEFMKLWKDRMKDYGFNVIGDL------AVN 121 (141)
T ss_pred CCEEEEECCCcCCC-cCChHHHHHHHHHhhccCcCCCEEEEEeCCCCCCCcHHHHHHHHHHHCCCeEeeeE------EEc
Confidence 34455566766532 222245666666665443468999999999876 3333233344455666543321 112
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 019212 207 VLLASAQWQAVLEYYNLR 224 (344)
Q Consensus 207 i~~~~~q~~~L~~f~~~~ 224 (344)
..|+++.++++++|-+.+
T Consensus 122 ~~p~~~~~~~~~~~g~~l 139 (141)
T PRK05569 122 ESPNKEELNSAKELGKKL 139 (141)
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 458889999999887654
No 63
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=52.95 E-value=17 Score=28.41 Aligned_cols=29 Identities=21% Similarity=0.167 Sum_probs=19.2
Q ss_pred cCCCeEEEEcCCCCChHHHHHHHHHHHhcCCC
Q 019212 161 LSRQTTYVHCKAGRGRSTTVVICYLVHHKQMT 192 (344)
Q Consensus 161 ~~g~~VLVHC~~G~gRSgtvvaaYLm~~~g~s 192 (344)
..+++|+|+|..|. ||..++. .| +..|.+
T Consensus 59 ~~~~~ivv~C~~G~-rs~~aa~-~L-~~~G~~ 87 (100)
T cd01523 59 PDDQEVTVICAKEG-SSQFVAE-LL-AERGYD 87 (100)
T ss_pred CCCCeEEEEcCCCC-cHHHHHH-HH-HHcCce
Confidence 45789999999985 7754443 33 345653
No 64
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=52.51 E-value=57 Score=25.24 Aligned_cols=81 Identities=15% Similarity=0.158 Sum_probs=42.7
Q ss_pred cCCcEEEEcCCCCCCCCCcccccccCc-EEEEEecCCC---CCCCCHHHHHHHHHHHHHHhcCCCeEEEEcCCCCChHHH
Q 019212 104 LGVGGVITLNEPYETLVPTSLYHAHCI-DHLVIPTRDY---CFAPSLGDICRAVDFICENALSRQTTYVHCKAGRGRSTT 179 (344)
Q Consensus 104 ~GI~~VInL~~~~e~~~~~~~~~~~GI-~yl~iPv~D~---~~~p~~~~l~~~v~fI~~~~~~g~~VLVHC~~G~gRSgt 179 (344)
.+=..|||++.+.+ |....| .-+++|.... ........+.............+.+|+++|..|. |+..
T Consensus 11 ~~~~~liD~R~~~~-------~~~~hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~-~~~~ 82 (113)
T PF00581_consen 11 NESVLLIDVRSPEE-------YERGHIPGAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGW-RSGS 82 (113)
T ss_dssp TTTEEEEEESSHHH-------HHHSBETTEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSC-HHHH
T ss_pred CCCeEEEEeCCHHH-------HHcCCCCCCccccccccccccccccccccccccccccccccccccceeeeeccc-ccch
Confidence 34457889976422 111111 1256776432 1223344455555555554566789999996665 5555
Q ss_pred HHHH---HHHHhcCCC
Q 019212 180 VVIC---YLVHHKQMT 192 (344)
Q Consensus 180 vvaa---YLm~~~g~s 192 (344)
.+.+ |.+...|++
T Consensus 83 ~~~~~~~~~l~~~g~~ 98 (113)
T PF00581_consen 83 AAAARVAWILKKLGFK 98 (113)
T ss_dssp HHHHHHHHHHHHTTTS
T ss_pred hHHHHHHHHHHHcCCC
Confidence 4443 445545553
No 65
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=50.95 E-value=37 Score=26.49 Aligned_cols=28 Identities=29% Similarity=0.535 Sum_probs=18.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHHhcCCC
Q 019212 162 SRQTTYVHCKAGRGRSTTVVICYLVHHKQMT 192 (344)
Q Consensus 162 ~g~~VLVHC~~G~gRSgtvvaaYLm~~~g~s 192 (344)
.+++|+++|..| .||... +.+|.+ .|.+
T Consensus 57 ~~~~vv~~c~~g-~rs~~~-~~~l~~-~G~~ 84 (101)
T cd01528 57 PDKDIVVLCHHG-GRSMQV-AQWLLR-QGFE 84 (101)
T ss_pred CCCeEEEEeCCC-chHHHH-HHHHHH-cCCc
Confidence 478999999988 577554 334444 5653
No 66
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=50.81 E-value=11 Score=35.70 Aligned_cols=83 Identities=19% Similarity=0.227 Sum_probs=53.0
Q ss_pred cEEEcCC-CCCCChhHHHhcCCcEEEEcCCCCCCCCCc---ccccccCcEEEEEecCCCC-----CCCCHHHHHHHHHHH
Q 019212 86 FLLLGAV-PFPTDVPCLKELGVGGVITLNEPYETLVPT---SLYHAHCIDHLVIPTRDYC-----FAPSLGDICRAVDFI 156 (344)
Q Consensus 86 ~LylG~~-p~a~d~~~Lk~~GI~~VInL~~~~e~~~~~---~~~~~~GI~yl~iPv~D~~-----~~p~~~~l~~~v~fI 156 (344)
.+..|++ ....-.+++++++|+.|||.+.++...... ...+..||.|+.+-=.... .--..++++++++.+
T Consensus 45 ~v~~G~l~~~~~l~~~l~~~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~eR~~~~~~~~~~~~~v~s~~~a~~~l 124 (248)
T PRK08057 45 PVRVGGFGGAEGLAAYLREEGIDLVIDATHPYAAQISANAAAACRALGIPYLRLERPSWLPQPGDRWIEVDDIEEAAEAL 124 (248)
T ss_pred eEEECCCCCHHHHHHHHHHCCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEeCCCcCCCCCCCEEEECCHHHHHHHh
Confidence 5778888 444556778899999999999986542221 2566789999888533211 112245677777776
Q ss_pred HHHhcCCCeEEEEcCCCC
Q 019212 157 CENALSRQTTYVHCKAGR 174 (344)
Q Consensus 157 ~~~~~~g~~VLVHC~~G~ 174 (344)
.+. ++||. ..|.
T Consensus 125 ~~~----~~vll--ttGs 136 (248)
T PRK08057 125 APF----RRVLL--TTGR 136 (248)
T ss_pred hcc----CCEEE--ecCc
Confidence 443 46666 4553
No 67
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=48.67 E-value=75 Score=26.15 Aligned_cols=41 Identities=15% Similarity=0.112 Sum_probs=27.7
Q ss_pred hHHHhcCCcEEEEcCCCCC-C--CCCc----ccccccCcEEEEEecCC
Q 019212 99 PCLKELGVGGVITLNEPYE-T--LVPT----SLYHAHCIDHLVIPTRD 139 (344)
Q Consensus 99 ~~Lk~~GI~~VInL~~~~e-~--~~~~----~~~~~~GI~yl~iPv~D 139 (344)
+.|++.||+.|||+..-.. . .+.. ......||.|.++|-..
T Consensus 7 ~~l~~~~i~~lVDVR~~P~S~~~~~~k~~l~~~l~~~gi~Y~~~~~Lg 54 (122)
T PF04343_consen 7 DLLKKNGIRVLVDVRLWPRSRKPGFNKEDLASFLEEAGIEYVWLPELG 54 (122)
T ss_pred HHHHHCCCeEEEEECCCCCCCCCCCCHHHHHHHHHHCCceEeechhhc
Confidence 4688999999999854311 1 1111 24456899999999765
No 68
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=48.25 E-value=61 Score=32.15 Aligned_cols=28 Identities=18% Similarity=0.226 Sum_probs=20.2
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHHhcCC
Q 019212 162 SRQTTYVHCKAGRGRSTTVVICYLVHHKQM 191 (344)
Q Consensus 162 ~g~~VLVHC~~G~gRSgtvvaaYLm~~~g~ 191 (344)
.+.+|+|+|..|-.||..++ +++...|+
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa--~~L~~~G~ 114 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQ--QWLKEAGI 114 (345)
T ss_pred CCCeEEEEECCCChHHHHHH--HHHHHcCC
Confidence 57899999987767988764 34444565
No 69
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=46.00 E-value=30 Score=33.22 Aligned_cols=41 Identities=12% Similarity=0.174 Sum_probs=30.4
Q ss_pred ccccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEcC
Q 019212 123 SLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICENALSRQTTYVHCK 171 (344)
Q Consensus 123 ~~~~~~GI~yl~iPv~D~~~~p~~~~l~~~v~fI~~~~~~g~~VLVHC~ 171 (344)
.+|++.|+.|+ -|++.+ ++++.++.++......+||+||..
T Consensus 229 ~lFe~LG~~Y~-GPiDGH-------dl~~Li~~l~~~K~~~gPvllHV~ 269 (270)
T PF13292_consen 229 NLFEELGFDYI-GPIDGH-------DLEELIEVLENAKDIDGPVLLHVI 269 (270)
T ss_dssp CCCHHCT-EEE-EEEETT--------HHHHHHHHHHHCCSSSEEEEEEE
T ss_pred HHHHHcCCeEE-eccCCC-------CHHHHHHHHHHHhcCCCCEEEEEe
Confidence 67899999996 677765 566777777777667899999964
No 70
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=45.47 E-value=61 Score=31.64 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=18.6
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHHhcCC
Q 019212 162 SRQTTYVHCKAGRGRSTTVVICYLVHHKQM 191 (344)
Q Consensus 162 ~g~~VLVHC~~G~gRSgtvvaaYLm~~~g~ 191 (344)
.+..|+|+|..|-.||..++ +++...|+
T Consensus 73 ~~~~vvvyC~~gG~RS~~aa--~~L~~~G~ 100 (311)
T TIGR03167 73 GPPQPLLYCWRGGMRSGSLA--WLLAQIGF 100 (311)
T ss_pred CCCcEEEEECCCChHHHHHH--HHHHHcCC
Confidence 34459999976667887664 34455665
No 71
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=45.18 E-value=26 Score=24.99 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=18.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhh
Q 019212 180 VVICYLVHHKQMTPDAAYDYVRSI 203 (344)
Q Consensus 180 vvaaYLm~~~g~s~~eAl~~Vr~~ 203 (344)
-+...||..+|+|.++|++.++..
T Consensus 17 ~AkgiLm~~~g~~e~~A~~~Lr~~ 40 (56)
T PF03861_consen 17 QAKGILMARYGLSEDEAYRLLRRQ 40 (56)
T ss_dssp HHHHHHHHHHT--HHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHH
Confidence 445679999999999999998864
No 72
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=44.51 E-value=43 Score=27.26 Aligned_cols=28 Identities=14% Similarity=0.281 Sum_probs=18.8
Q ss_pred cCCCeEEEEcCCCCChHHHHHHHHHHHhcCC
Q 019212 161 LSRQTTYVHCKAGRGRSTTVVICYLVHHKQM 191 (344)
Q Consensus 161 ~~g~~VLVHC~~G~gRSgtvvaaYLm~~~g~ 191 (344)
...++|+|+|..| .||..++.. | ...|.
T Consensus 62 ~~~~~ivv~C~~G-~rs~~aa~~-L-~~~G~ 89 (117)
T cd01522 62 GKDRPVLLLCRSG-NRSIAAAEA-A-AQAGF 89 (117)
T ss_pred CCCCeEEEEcCCC-ccHHHHHHH-H-HHCCC
Confidence 4578999999988 577665433 3 33454
No 73
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=40.67 E-value=48 Score=30.46 Aligned_cols=38 Identities=26% Similarity=0.408 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEcCCCCChHHHHHHHHHHHhcC
Q 019212 147 GDICRAVDFICENALSRQTTYVHCKAGRGRSTTVVICYLVHHKQ 190 (344)
Q Consensus 147 ~~l~~~v~fI~~~~~~g~~VLVHC~~G~gRSgtvvaaYLm~~~g 190 (344)
+.|.++++.|-++ .++|+| .|.||||.+.=++-|+...
T Consensus 26 ~~~~~a~~~i~~~---~gkv~V---~G~GkSG~Igkk~Aa~L~s 63 (202)
T COG0794 26 EDFVRAVELILEC---KGKVFV---TGVGKSGLIGKKFAARLAS 63 (202)
T ss_pred HHHHHHHHHHHhc---CCcEEE---EcCChhHHHHHHHHHHHHc
Confidence 4666677666554 678888 6999999999877776443
No 74
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=39.44 E-value=17 Score=34.40 Aligned_cols=82 Identities=13% Similarity=0.097 Sum_probs=49.3
Q ss_pred EEEcCCCCCCChhHHHhcCCcEEEEcCCCCCCCCC---cccccccCcEEEEEecC---CCCCCCCHHHHHHHHHHHHHHh
Q 019212 87 LLLGAVPFPTDVPCLKELGVGGVITLNEPYETLVP---TSLYHAHCIDHLVIPTR---DYCFAPSLGDICRAVDFICENA 160 (344)
Q Consensus 87 LylG~~p~a~d~~~Lk~~GI~~VInL~~~~e~~~~---~~~~~~~GI~yl~iPv~---D~~~~p~~~~l~~~v~fI~~~~ 160 (344)
+..|.+....-..++++.+|+.|||.+.++-.... ....++.|+.|+.+-=. +.+.-...+++.++++.+.+..
T Consensus 47 v~~g~l~~~~l~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~eR~~~~~~~~~~~v~~~~ea~~~~~~~~ 126 (256)
T TIGR00715 47 VHTGALDPQELREFLKRHSIDILVDATHPFAAQITTNATAVCKELGIPYVRFERPPLALGKNIIEVPDIEEATRVAYQPY 126 (256)
T ss_pred EEECCCCHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEEECCCCCCCCCeEEeCCHHHHHHHhhhcc
Confidence 55666554443477888999999999987643111 12566789999988322 1111223456777777664411
Q ss_pred cCCCeEEE
Q 019212 161 LSRQTTYV 168 (344)
Q Consensus 161 ~~g~~VLV 168 (344)
..+++||.
T Consensus 127 ~~~~~i~l 134 (256)
T TIGR00715 127 LRGKRVFL 134 (256)
T ss_pred ccCCcEEE
Confidence 12456776
No 75
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=35.97 E-value=62 Score=31.35 Aligned_cols=18 Identities=28% Similarity=0.523 Sum_probs=16.0
Q ss_pred eEEEEcCCCCChHHHHHH
Q 019212 165 TTYVHCKAGRGRSTTVVI 182 (344)
Q Consensus 165 ~VLVHC~~G~gRSgtvva 182 (344)
.|-|=|+.|..||.+++=
T Consensus 244 tIaiGCTGG~HRSV~iae 261 (284)
T PF03668_consen 244 TIAIGCTGGQHRSVAIAE 261 (284)
T ss_pred EEEEEcCCCcCcHHHHHH
Confidence 688999999999998874
No 76
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=34.65 E-value=68 Score=27.61 Aligned_cols=74 Identities=18% Similarity=0.084 Sum_probs=36.3
Q ss_pred HHHhcCCcEEEEcCCCCCCCCCcccccccCcEEEEEecCCCCC--CCCHHHHHHHHHHHHHHhcCCCeEEEEcCCCCChH
Q 019212 100 CLKELGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYCF--APSLGDICRAVDFICENALSRQTTYVHCKAGRGRS 177 (344)
Q Consensus 100 ~Lk~~GI~~VInL~~~~e~~~~~~~~~~~GI~yl~iPv~D~~~--~p~~~~l~~~v~fI~~~~~~g~~VLVHC~~G~gRS 177 (344)
.|.+.|=...||++++.|.. ..+--.-+++|..-... ....+.|.+-+.+... ...+.++++|+.|. ||
T Consensus 32 ~L~~~~~~~llDVRepeEfk------~gh~~~siNiPy~~~~~~~~l~~~eF~kqvg~~kp--~~d~eiIf~C~SG~-Rs 102 (136)
T KOG1530|consen 32 NLLQHPDVVLLDVREPEEFK------QGHIPASINIPYMSRPGAGALKNPEFLKQVGSSKP--PHDKEIIFGCASGV-RS 102 (136)
T ss_pred HHhcCCCEEEEeecCHHHhh------ccCCcceEeccccccccccccCCHHHHHHhcccCC--CCCCcEEEEeccCc-ch
Confidence 34445546778887654320 00112344666543221 1122333333332211 12458999999996 88
Q ss_pred HHHHH
Q 019212 178 TTVVI 182 (344)
Q Consensus 178 gtvva 182 (344)
.+..-
T Consensus 103 ~~A~~ 107 (136)
T KOG1530|consen 103 LKATK 107 (136)
T ss_pred hHHHH
Confidence 65443
No 77
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=33.72 E-value=96 Score=28.14 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEEEcCCCCChHHHHHHHHHHH
Q 019212 146 LGDICRAVDFICENALSRQTTYVHCKAGRGRSTTVVICYLVH 187 (344)
Q Consensus 146 ~~~l~~~v~fI~~~~~~g~~VLVHC~~G~gRSgtvvaaYLm~ 187 (344)
.+.+.++++.|.+.+.++++|++. |.|+|+.++..+-++
T Consensus 24 ~~~i~~a~~~l~~~l~~~~rI~~~---G~GgSa~~A~~~a~~ 62 (196)
T PRK10886 24 PDAISRAAMTLVQSLLNGNKILCC---GNGTSAANAQHFAAS 62 (196)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEE---ECcHHHHHHHHHHHH
Confidence 367888899998888889999984 889998887665443
No 78
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=33.31 E-value=67 Score=24.70 Aligned_cols=28 Identities=11% Similarity=-0.041 Sum_probs=17.8
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHHhcCC
Q 019212 163 RQTTYVHCKAGRGRSTTVVICYLVHHKQM 191 (344)
Q Consensus 163 g~~VLVHC~~G~gRSgtvvaaYLm~~~g~ 191 (344)
..+|+|+|..|...++..++..| +..|.
T Consensus 50 ~~~ivl~c~~G~~~~s~~aa~~L-~~~G~ 77 (92)
T cd01532 50 DTPIVVYGEGGGEDLAPRAARRL-SELGY 77 (92)
T ss_pred CCeEEEEeCCCCchHHHHHHHHH-HHcCc
Confidence 67999999998644444444444 33554
No 79
>PRK05320 rhodanese superfamily protein; Provisional
Probab=33.15 E-value=81 Score=29.86 Aligned_cols=28 Identities=14% Similarity=0.246 Sum_probs=19.4
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHHhcCCC
Q 019212 162 SRQTTYVHCKAGRGRSTTVVICYLVHHKQMT 192 (344)
Q Consensus 162 ~g~~VLVHC~~G~gRSgtvvaaYLm~~~g~s 192 (344)
.+++|+++|..|. ||..+ +.+|.. .|.+
T Consensus 174 kdk~IvvyC~~G~-Rs~~A-a~~L~~-~Gf~ 201 (257)
T PRK05320 174 AGKTVVSFCTGGI-RCEKA-AIHMQE-VGID 201 (257)
T ss_pred CCCeEEEECCCCH-HHHHH-HHHHHH-cCCc
Confidence 5789999999994 77554 445544 5553
No 80
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=33.00 E-value=49 Score=35.36 Aligned_cols=47 Identities=9% Similarity=0.297 Sum_probs=29.8
Q ss_pred ccccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEcCCCCChH
Q 019212 123 SLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICENALSRQTTYVHCKAGRGRS 177 (344)
Q Consensus 123 ~~~~~~GI~yl~iPv~D~~~~p~~~~l~~~v~fI~~~~~~g~~VLVHC~~G~gRS 177 (344)
..|++.|+.|+. |++.+ ..+.+.++++ .+...++|++|||..=.|+.
T Consensus 232 ~~f~~~G~~~~~-~vDGh----d~~~l~~al~---~ak~~~~P~~i~~~T~KGkG 278 (617)
T TIGR00204 232 TFFEELGFNYIG-PVDGH----DLLELIETLK---NAKKLKGPVFLHIQTKKGKG 278 (617)
T ss_pred chHHHcCCcEEc-ccCCC----CHHHHHHHHH---HHhcCCCCEEEEEEecCCCC
Confidence 458889998876 77654 2344444444 44344679999998555544
No 81
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=32.33 E-value=62 Score=24.92 Aligned_cols=27 Identities=11% Similarity=0.113 Sum_probs=17.8
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHHhcCCC
Q 019212 163 RQTTYVHCKAGRGRSTTVVICYLVHHKQMT 192 (344)
Q Consensus 163 g~~VLVHC~~G~gRSgtvvaaYLm~~~g~s 192 (344)
+.+|+++|..|. ||... +.+| +..|.+
T Consensus 56 ~~~iv~~c~~G~-rs~~a-a~~L-~~~G~~ 82 (95)
T cd01534 56 GARIVLADDDGV-RADMT-ASWL-AQMGWE 82 (95)
T ss_pred CCeEEEECCCCC-hHHHH-HHHH-HHcCCE
Confidence 678999999985 66543 3334 445653
No 82
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=31.08 E-value=58 Score=25.06 Aligned_cols=28 Identities=14% Similarity=0.173 Sum_probs=18.4
Q ss_pred cCCCeEEEEcCCCCChHHHHHHHHHHHhcCC
Q 019212 161 LSRQTTYVHCKAGRGRSTTVVICYLVHHKQM 191 (344)
Q Consensus 161 ~~g~~VLVHC~~G~gRSgtvvaaYLm~~~g~ 191 (344)
....+|+|+|..| .||..+ ++++...|.
T Consensus 59 ~~~~~ivv~c~~g-~~s~~~--~~~l~~~G~ 86 (103)
T cd01447 59 AEDKPFVFYCASG-WRSALA--GKTLQDMGL 86 (103)
T ss_pred CCCCeEEEEcCCC-CcHHHH--HHHHHHcCh
Confidence 4578999999887 476432 344454554
No 83
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=30.95 E-value=29 Score=28.04 Aligned_cols=11 Identities=36% Similarity=0.990 Sum_probs=9.4
Q ss_pred CCeEEEEcCCC
Q 019212 163 RQTTYVHCKAG 173 (344)
Q Consensus 163 g~~VLVHC~~G 173 (344)
..+|||||.-|
T Consensus 85 ~~~~yIhCsIG 95 (97)
T PF10302_consen 85 APRIYIHCSIG 95 (97)
T ss_pred CCeEEEEEecc
Confidence 46899999877
No 84
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=30.86 E-value=70 Score=24.85 Aligned_cols=26 Identities=0% Similarity=0.041 Sum_probs=17.5
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHHhcCC
Q 019212 163 RQTTYVHCKAGRGRSTTVVICYLVHHKQM 191 (344)
Q Consensus 163 g~~VLVHC~~G~gRSgtvvaaYLm~~~g~ 191 (344)
+++|+|+|..|. ||..++. .++..|.
T Consensus 65 ~~~vv~~c~~g~-~s~~~a~--~L~~~G~ 90 (105)
T cd01525 65 GKIIVIVSHSHK-HAALFAA--FLVKCGV 90 (105)
T ss_pred CCeEEEEeCCCc-cHHHHHH--HHHHcCC
Confidence 678999999986 6655433 3444555
No 85
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=30.04 E-value=1.2e+02 Score=24.19 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=15.6
Q ss_pred CCCeEEEEcCCCCChHHHHHHH
Q 019212 162 SRQTTYVHCKAGRGRSTTVVIC 183 (344)
Q Consensus 162 ~g~~VLVHC~~G~gRSgtvvaa 183 (344)
...+|+|||..+-.|+...+..
T Consensus 61 ~~~~iv~yC~~~~~r~~~aa~~ 82 (113)
T cd01531 61 KKDTVVFHCALSQVRGPSAARK 82 (113)
T ss_pred CCCeEEEEeecCCcchHHHHHH
Confidence 3579999999555677665443
No 86
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=29.97 E-value=79 Score=30.48 Aligned_cols=18 Identities=28% Similarity=0.523 Sum_probs=15.7
Q ss_pred eEEEEcCCCCChHHHHHH
Q 019212 165 TTYVHCKAGRGRSTTVVI 182 (344)
Q Consensus 165 ~VLVHC~~G~gRSgtvva 182 (344)
.|-|=|+.|..||.+++-
T Consensus 247 ~i~igCtGG~HRSV~~~e 264 (288)
T PRK05416 247 TIAIGCTGGQHRSVAIAE 264 (288)
T ss_pred EEEEecCCCcccHHHHHH
Confidence 488899999999988874
No 87
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=29.67 E-value=60 Score=34.67 Aligned_cols=49 Identities=10% Similarity=0.225 Sum_probs=34.7
Q ss_pred CcccccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEcCCCCChH
Q 019212 121 PTSLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICENALSRQTTYVHCKAGRGRS 177 (344)
Q Consensus 121 ~~~~~~~~GI~yl~iPv~D~~~~p~~~~l~~~v~fI~~~~~~g~~VLVHC~~G~gRS 177 (344)
|..++++.|++|+ -|++.+ ++++.+..+.+....++||+||...=.|+-
T Consensus 235 ~~~lFeelGf~Yi-GPiDGH-------ni~~Li~~Lk~~kd~~gPvllHv~T~KGKG 283 (627)
T COG1154 235 PGTLFEELGFNYI-GPIDGH-------NLEELIPTLKNAKDLKGPVLLHVVTKKGKG 283 (627)
T ss_pred chhhHHHhCCeeE-CCcCCC-------CHHHHHHHHHHHhcCCCCEEEEEEecCCCC
Confidence 4457899999996 566664 456666666666667899999997654443
No 88
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=29.61 E-value=76 Score=26.95 Aligned_cols=24 Identities=17% Similarity=0.037 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhcCCCeEEEEcCC
Q 019212 149 ICRAVDFICENALSRQTTYVHCKA 172 (344)
Q Consensus 149 l~~~v~fI~~~~~~g~~VLVHC~~ 172 (344)
..-+++.++++..+|++|+|+|..
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d 38 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPD 38 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SS
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCC
Confidence 566778889999999999999954
No 89
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=29.32 E-value=52 Score=31.17 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=17.5
Q ss_pred cCCCeEEEEcCCCCChHHHHHHHHHHHhcCC
Q 019212 161 LSRQTTYVHCKAGRGRSTTVVICYLVHHKQM 191 (344)
Q Consensus 161 ~~g~~VLVHC~~G~gRSgtvvaaYLm~~~g~ 191 (344)
..+++|+++|..|. |+ ++++.+| +..|.
T Consensus 229 ~~~~~ii~yC~~G~-~A-~~~~~~l-~~~G~ 256 (281)
T PRK11493 229 SFDRPIIASCGSGV-TA-AVVVLAL-ATLDV 256 (281)
T ss_pred CCCCCEEEECCcHH-HH-HHHHHHH-HHcCC
Confidence 44679999998876 44 3333333 44565
No 90
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=29.11 E-value=58 Score=28.39 Aligned_cols=22 Identities=14% Similarity=0.150 Sum_probs=19.6
Q ss_pred HHHHHHHHHhcCCCeEEEEcCC
Q 019212 151 RAVDFICENALSRQTTYVHCKA 172 (344)
Q Consensus 151 ~~v~fI~~~~~~g~~VLVHC~~ 172 (344)
-++.+++++...|.+|+|+|..
T Consensus 17 ~~c~L~~k~~~~G~rvlI~~~d 38 (144)
T COG2927 17 AACRLAEKAWRSGWRVLIQCED 38 (144)
T ss_pred HHHHHHHHHHHcCCeEEEEeCC
Confidence 7788999999999999999953
No 91
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=28.82 E-value=4.6e+02 Score=24.06 Aligned_cols=76 Identities=18% Similarity=0.106 Sum_probs=39.9
Q ss_pred ChhHHHhcCCcEEEEcCCCCCCCCCcccccccCcEEEEEecCCCC----CCCCHHHHHHHHHHHHHHhcCCCeEEEEcCC
Q 019212 97 DVPCLKELGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYC----FAPSLGDICRAVDFICENALSRQTTYVHCKA 172 (344)
Q Consensus 97 d~~~Lk~~GI~~VInL~~~~e~~~~~~~~~~~GI~yl~iPv~D~~----~~p~~~~l~~~v~fI~~~~~~g~~VLVHC~~ 172 (344)
-.+.|+++||..|++-........+.......++.|+.+-=.... ..=+.+.+++..+.|.+...+++.|+|....
T Consensus 134 ~~~~l~~~~~~~v~~d~~~~~~~p~~~~~~~~~~~y~RlhG~~~~~~~~~~Ys~~eL~~~a~~i~~~~~~~~~v~v~fnN 213 (230)
T PF01904_consen 134 VFELLREHGVALVIADSPRLPSLPPPEPQTTPDFAYVRLHGRNGEGWYDYRYSDEELEEWAERIRAWAAQGKEVYVFFNN 213 (230)
T ss_dssp HHHHHHHTT-EEEEEE---BTTC------SSTTEEEEEE--S-TTTTTB----HHHHHHHHHHHHHHHTCSSEEEEEE-S
T ss_pred HHHHHHHcCCEEEEeCCcccCCCCCcccccCCCCeEEeeccCcccccccccCCHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 346788999999988765522111111111135566555433211 1124578999999999988888888877655
No 92
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=28.69 E-value=63 Score=26.56 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=17.0
Q ss_pred cCCCeEEEEcCCCCChHHHHHHHHHHH
Q 019212 161 LSRQTTYVHCKAGRGRSTTVVICYLVH 187 (344)
Q Consensus 161 ~~g~~VLVHC~~G~gRSgtvvaaYLm~ 187 (344)
....+|+|||..+-.||+.++. +|..
T Consensus 66 ~~~~~vv~yC~~sg~rs~~aa~-~L~~ 91 (121)
T cd01530 66 KKRRVLIFHCEFSSKRGPRMAR-HLRN 91 (121)
T ss_pred CCCCEEEEECCCccccHHHHHH-HHHH
Confidence 4578999999843367765444 4544
No 93
>smart00400 ZnF_CHCC zinc finger.
Probab=27.77 E-value=68 Score=22.63 Aligned_cols=32 Identities=22% Similarity=0.430 Sum_probs=23.1
Q ss_pred EEEcCCCCChHHHHHHHHHHHhcCCCHHHHHHHH
Q 019212 167 YVHCKAGRGRSTTVVICYLVHHKQMTPDAAYDYV 200 (344)
Q Consensus 167 LVHC~~G~gRSgtvvaaYLm~~~g~s~~eAl~~V 200 (344)
..||.. -++.|-+ +-++|+..+++..+|++.+
T Consensus 23 ~~~Cf~-cg~gGd~-i~fv~~~~~~sf~eA~~~L 54 (55)
T smart00400 23 FFHCFG-CGAGGNV-ISFLMKYDKLSFVEAVKKL 54 (55)
T ss_pred EEEEeC-CCCCCCH-HHHHHHHHCcCHHHHHHHh
Confidence 467774 3566665 4467777899999999875
No 94
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=27.35 E-value=3e+02 Score=28.09 Aligned_cols=76 Identities=17% Similarity=0.263 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhcCC-CeEEEEcC-----------CC-----CChHHHHHHHHHHHhcCCC-----HHHHHHHHHh----
Q 019212 149 ICRAVDFICENALSR-QTTYVHCK-----------AG-----RGRSTTVVICYLVHHKQMT-----PDAAYDYVRS---- 202 (344)
Q Consensus 149 l~~~v~fI~~~~~~g-~~VLVHC~-----------~G-----~gRSgtvvaaYLm~~~g~s-----~~eAl~~Vr~---- 202 (344)
-+.+++.|+++.++| --+-|||- .| .||-|++.++|++++..-+ +++.++..+.
T Consensus 139 ~d~~~~~ie~qa~dGVDfmTiH~Gi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~~~~ENPlye~fD~lLeI~~~yDVt 218 (423)
T TIGR00190 139 EDDMFRAIEKQAKDGVDFMTIHAGVLLEYVERLKRSGRITGIVSRGGAILAAWMLHHHKENPLYKNFDYILEIAKEYDVT 218 (423)
T ss_pred HHHHHHHHHHHHHhCCCEEEEccchhHHHHHHHHhCCCccCeecCcHHHHHHHHHHcCCcCchHHHHHHHHHHHHHhCee
Confidence 346677788877776 57889995 22 5899999999999876653 4445555554
Q ss_pred ------hCCCCCCC---HHHHHHHHHHHHHH
Q 019212 203 ------IRPRVLLA---SAQWQAVLEYYNLR 224 (344)
Q Consensus 203 ------~Rp~i~~~---~~q~~~L~~f~~~~ 224 (344)
.||..... ..|++.|...-++-
T Consensus 219 lSLGDglRPG~i~DA~D~aQi~El~~lgeL~ 249 (423)
T TIGR00190 219 LSLGDGLRPGCIADATDRAQISELITLGELV 249 (423)
T ss_pred eeccCCcCCCccccCCcHHHHHHHHHHHHHH
Confidence 78887763 56777666555443
No 95
>PRK07411 hypothetical protein; Validated
Probab=27.13 E-value=76 Score=31.86 Aligned_cols=28 Identities=21% Similarity=0.474 Sum_probs=18.9
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHHhcCCC
Q 019212 162 SRQTTYVHCKAGRGRSTTVVICYLVHHKQMT 192 (344)
Q Consensus 162 ~g~~VLVHC~~G~gRSgtvvaaYLm~~~g~s 192 (344)
.+++|+|||..|. ||... +. .++..|++
T Consensus 341 ~d~~IVvyC~~G~-RS~~a-a~-~L~~~G~~ 368 (390)
T PRK07411 341 NGHRLIAHCKMGG-RSAKA-LG-ILKEAGIE 368 (390)
T ss_pred CCCeEEEECCCCH-HHHHH-HH-HHHHcCCC
Confidence 4689999999886 88553 33 34456653
No 96
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=27.00 E-value=62 Score=30.79 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=22.4
Q ss_pred CCCCChHHHHHHHHHHHhcCCCHHHHHHH
Q 019212 171 KAGRGRSTTVVICYLVHHKQMTPDAAYDY 199 (344)
Q Consensus 171 ~~G~gRSgtvvaaYLm~~~g~s~~eAl~~ 199 (344)
--|.||||+.+++-++ .|++.++|.++
T Consensus 159 ~PGiSRSG~Ti~~~l~--~G~~r~~A~~f 185 (259)
T PF02673_consen 159 IPGISRSGATITAGLL--LGLDREEAARF 185 (259)
T ss_pred CCCcChHHHHHHHHHH--CCCCHHHHHHH
Confidence 4699999998888766 59999988775
No 97
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=27.00 E-value=80 Score=24.27 Aligned_cols=28 Identities=7% Similarity=-0.152 Sum_probs=18.5
Q ss_pred cCCCeEEEEcCCCCChHHHHHHHHHHHhcCC
Q 019212 161 LSRQTTYVHCKAGRGRSTTVVICYLVHHKQM 191 (344)
Q Consensus 161 ~~g~~VLVHC~~G~gRSgtvvaaYLm~~~g~ 191 (344)
..+++|+|+|..| .||..+ +.+| +..|.
T Consensus 54 ~~~~~ivv~c~~g-~~s~~~-~~~l-~~~G~ 81 (96)
T cd01529 54 GRATRYVLTCDGS-LLARFA-AQEL-LALGG 81 (96)
T ss_pred CCCCCEEEEeCCh-HHHHHH-HHHH-HHcCC
Confidence 4578999999876 577554 3444 44565
No 98
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=26.84 E-value=80 Score=27.03 Aligned_cols=25 Identities=8% Similarity=0.042 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEcCC
Q 019212 148 DICRAVDFICENALSRQTTYVHCKA 172 (344)
Q Consensus 148 ~l~~~v~fI~~~~~~g~~VLVHC~~ 172 (344)
...-+++.++++..+|.+|+|+|..
T Consensus 14 ~~~~~c~L~~ka~~~g~rv~I~~~d 38 (142)
T PRK05728 14 LEALLCELAEKALRAGWRVLVQCED 38 (142)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4556788889999999999999954
No 99
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=25.98 E-value=73 Score=25.91 Aligned_cols=28 Identities=25% Similarity=0.371 Sum_probs=18.7
Q ss_pred cCCCeEEEEcCCCCChHHHHHHHHHHHhcCC
Q 019212 161 LSRQTTYVHCKAGRGRSTTVVICYLVHHKQM 191 (344)
Q Consensus 161 ~~g~~VLVHC~~G~gRSgtvvaaYLm~~~g~ 191 (344)
..+++|+|+|..|. ||...+- + ++..|.
T Consensus 70 ~~~~~ivv~C~~G~-rs~~aa~-~-L~~~G~ 97 (122)
T cd01526 70 DKDSPIYVVCRRGN-DSQTAVR-K-LKELGL 97 (122)
T ss_pred CCCCcEEEECCCCC-cHHHHHH-H-HHHcCC
Confidence 45789999999985 8754433 3 344565
No 100
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=25.85 E-value=97 Score=24.01 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=18.3
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHHhcCC
Q 019212 162 SRQTTYVHCKAGRGRSTTVVICYLVHHKQM 191 (344)
Q Consensus 162 ~g~~VLVHC~~G~gRSgtvvaaYLm~~~g~ 191 (344)
.+.+|+|+|..|. ||..+ ++++...|.
T Consensus 65 ~~~~ivv~c~~g~-~s~~~--~~~l~~~G~ 91 (106)
T cd01519 65 KDKELIFYCKAGV-RSKAA--AELARSLGY 91 (106)
T ss_pred CCCeEEEECCCcH-HHHHH--HHHHHHcCC
Confidence 4689999999885 66443 344555665
No 101
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=25.59 E-value=1.5e+02 Score=23.61 Aligned_cols=19 Identities=16% Similarity=0.373 Sum_probs=14.6
Q ss_pred CCeEEEEcCCCCChHHHHH
Q 019212 163 RQTTYVHCKAGRGRSTTVV 181 (344)
Q Consensus 163 g~~VLVHC~~G~gRSgtvv 181 (344)
..+|+|||..|-.||..++
T Consensus 66 ~~~iv~~C~~~g~rs~~a~ 84 (113)
T cd01443 66 VKLAIFYCGSSQGRGPRAA 84 (113)
T ss_pred CCEEEEECCCCCcccHHHH
Confidence 5789999998767876544
No 102
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=25.54 E-value=1.3e+02 Score=24.16 Aligned_cols=27 Identities=22% Similarity=0.249 Sum_probs=17.1
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHHhcCC
Q 019212 162 SRQTTYVHCKAGRGRSTTVVICYLVHHKQM 191 (344)
Q Consensus 162 ~g~~VLVHC~~G~gRSgtvvaaYLm~~~g~ 191 (344)
.+.+|+++|..| .||..++. .|. ..|.
T Consensus 59 ~~~~IVlyC~~G-~rS~~aa~-~L~-~~G~ 85 (104)
T PRK10287 59 KNDTVKLYCNAG-RQSGQAKE-ILS-EMGY 85 (104)
T ss_pred CCCeEEEEeCCC-hHHHHHHH-HHH-HcCC
Confidence 357899999988 46655543 333 3454
No 103
>KOG1004 consensus Exosomal 3'-5' exoribonuclease complex subunit Rrp40 [Translation, ribosomal structure and biogenesis]
Probab=25.41 E-value=1.4e+02 Score=27.86 Aligned_cols=39 Identities=15% Similarity=0.148 Sum_probs=32.0
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHh
Q 019212 162 SRQTTYVHCKAGRGRSTTVVICYLVHHKQMTPDAAYDYVRS 202 (344)
Q Consensus 162 ~g~~VLVHC~~G~gRSgtvvaaYLm~~~g~s~~eAl~~Vr~ 202 (344)
.+++|+|||.. .+...+++-+||....|+-++++.+++.
T Consensus 184 lNGriWV~ae~--~~~t~~i~~~l~~~e~~td~~q~~~~k~ 222 (230)
T KOG1004|consen 184 LNGRIWVKAET--LSDTLIIANILMNCEFMTDTQQRIMVKQ 222 (230)
T ss_pred cCceEEEeccC--cchHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 47999999986 4677888889999999998887766554
No 104
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=25.04 E-value=3.1e+02 Score=28.16 Aligned_cols=76 Identities=18% Similarity=0.277 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhcCC-CeEEEEcC----------------CCCChHHHHHHHHHHHhcCCC-----HHHHHHHHHh----
Q 019212 149 ICRAVDFICENALSR-QTTYVHCK----------------AGRGRSTTVVICYLVHHKQMT-----PDAAYDYVRS---- 202 (344)
Q Consensus 149 l~~~v~fI~~~~~~g-~~VLVHC~----------------~G~gRSgtvvaaYLm~~~g~s-----~~eAl~~Vr~---- 202 (344)
-+.+++.|+++.++| --+-|||- .=.||-|++.++|+++...-+ +++.++..+.
T Consensus 142 ~d~~~~~ie~qa~~GVDfmTiHcGi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~n~~ENPlye~fD~lLeI~~~yDVt 221 (431)
T PRK13352 142 EDDLFDVIEKQAKDGVDFMTIHCGVTRETLERLKKSGRIMGIVSRGGSFLAAWMLHNNKENPLYEHFDYLLEILKEYDVT 221 (431)
T ss_pred HHHHHHHHHHHHHhCCCEEEEccchhHHHHHHHHhcCCccCeecCCHHHHHHHHHHcCCcCchHHHHHHHHHHHHHhCee
Confidence 346677777777776 57889994 125899999999999877653 4555555554
Q ss_pred ------hCCCCCC---CHHHHHHHHHHHHHH
Q 019212 203 ------IRPRVLL---ASAQWQAVLEYYNLR 224 (344)
Q Consensus 203 ------~Rp~i~~---~~~q~~~L~~f~~~~ 224 (344)
.||.... ...|+..|...-++-
T Consensus 222 lSLGDglRPG~i~Da~D~aQi~El~~lgeL~ 252 (431)
T PRK13352 222 LSLGDGLRPGCIADATDRAQIQELITLGELV 252 (431)
T ss_pred eeccCCcCCCccccCCcHHHHHHHHHHHHHH
Confidence 7888775 357777776655443
No 105
>PRK12554 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=24.14 E-value=70 Score=30.77 Aligned_cols=26 Identities=31% Similarity=0.418 Sum_probs=21.3
Q ss_pred CCCChHHHHHHHHHHHhcCCCHHHHHHH
Q 019212 172 AGRGRSTTVVICYLVHHKQMTPDAAYDY 199 (344)
Q Consensus 172 ~G~gRSgtvvaaYLm~~~g~s~~eAl~~ 199 (344)
-|.||||+-+.+-|+ .|++.++|.++
T Consensus 166 PGiSRSG~TI~a~l~--~G~~r~~Aa~f 191 (276)
T PRK12554 166 PGVSRSGATIIAGLL--LGLTREAAARF 191 (276)
T ss_pred cCCCCchHHHHHHHH--cCCCHHHHHHH
Confidence 599999988887666 49999998765
No 106
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=24.09 E-value=69 Score=25.51 Aligned_cols=18 Identities=22% Similarity=0.481 Sum_probs=14.2
Q ss_pred CCeEEEEcCCCCChHHHHH
Q 019212 163 RQTTYVHCKAGRGRSTTVV 181 (344)
Q Consensus 163 g~~VLVHC~~G~gRSgtvv 181 (344)
.++||+-|.+|.+ |+.++
T Consensus 3 ~~~ILl~C~~G~s-SS~l~ 20 (95)
T TIGR00853 3 ETNILLLCAAGMS-TSLLV 20 (95)
T ss_pred ccEEEEECCCchh-HHHHH
Confidence 4689999999998 55544
No 107
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=24.01 E-value=1.1e+02 Score=24.49 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=17.6
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHHhcCC
Q 019212 162 SRQTTYVHCKAGRGRSTTVVICYLVHHKQM 191 (344)
Q Consensus 162 ~g~~VLVHC~~G~gRSgtvvaaYLm~~~g~ 191 (344)
.+.+|+|+|..|. ||...+. .|. ..|.
T Consensus 57 ~~~~vvlyC~~G~-rS~~aa~-~L~-~~G~ 83 (101)
T TIGR02981 57 KNDTVKLYCNAGR-QSGMAKD-ILL-DMGY 83 (101)
T ss_pred CCCeEEEEeCCCH-HHHHHHH-HHH-HcCC
Confidence 4578999999985 7765533 333 3554
No 108
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=23.80 E-value=1.2e+02 Score=29.18 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=15.6
Q ss_pred eEEEEcCCCCChHHHHHH
Q 019212 165 TTYVHCKAGRGRSTTVVI 182 (344)
Q Consensus 165 ~VLVHC~~G~gRSgtvva 182 (344)
.|-|=|+.|..||.+++=
T Consensus 245 TIaIGCTGGqHRSV~iae 262 (286)
T COG1660 245 TIAIGCTGGQHRSVYIAE 262 (286)
T ss_pred EEEEccCCCccchHHHHH
Confidence 577899999999998873
No 109
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=23.37 E-value=1.8e+02 Score=24.14 Aligned_cols=33 Identities=18% Similarity=0.148 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEcCCCCChHHH
Q 019212 147 GDICRAVDFICENALSRQTTYVHCKAGRGRSTT 179 (344)
Q Consensus 147 ~~l~~~v~fI~~~~~~g~~VLVHC~~G~gRSgt 179 (344)
..+.++.+.+.+....+.+|+|....|.|++-.
T Consensus 5 ~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~ 37 (138)
T PF14532_consen 5 PAMRRLRRQLERLAKSSSPVLITGEPGTGKSLL 37 (138)
T ss_dssp HHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHH
Confidence 467777888888888899999999999999964
No 110
>TIGR00753 undec_PP_bacA undecaprenyl-diphosphatase UppP. This is a family of small, highly hydrophobic proteins. Overexpression of this protein in Escherichia coli is associated with bacitracin resistance, and the protein was originally proposed to be an undecaprenol kinase and called bacA. It is now known to be an undecaprenyl pyrophosphate phosphatase (EC 3.6.1.27) and is renamed UppP.
Probab=23.00 E-value=77 Score=30.12 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=21.3
Q ss_pred CCCChHHHHHHHHHHHhcCCCHHHHHHH
Q 019212 172 AGRGRSTTVVICYLVHHKQMTPDAAYDY 199 (344)
Q Consensus 172 ~G~gRSgtvvaaYLm~~~g~s~~eAl~~ 199 (344)
-|.||||+-+.+-|+ .|++.++|.++
T Consensus 160 PGiSRSG~TI~a~l~--~G~~r~~Aa~f 185 (255)
T TIGR00753 160 PGVSRSGSTISGGLF--IGLNRKAAAEF 185 (255)
T ss_pred cCCCCchHHHHHHHH--cCCCHHHHHHH
Confidence 599999988887666 49999988765
No 111
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=22.92 E-value=3.2e+02 Score=27.25 Aligned_cols=87 Identities=18% Similarity=0.194 Sum_probs=55.0
Q ss_pred HHHhcCCcEEEEcCCCCCCCCCcccccccCcEEEEEec-CCCCCCCC---------HHHHHHHHHHHHHHhcCCCeEEEE
Q 019212 100 CLKELGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPT-RDYCFAPS---------LGDICRAVDFICENALSRQTTYVH 169 (344)
Q Consensus 100 ~Lk~~GI~~VInL~~~~e~~~~~~~~~~~GI~yl~iPv-~D~~~~p~---------~~~l~~~v~fI~~~~~~g~~VLVH 169 (344)
.|+++||..+|.+..+.....-..+.+..++..+.+|= -|++...+ .+...++++-|++..+..+++.|+
T Consensus 89 ~l~~~gId~LvvIGGDgS~~gA~~Lae~~~i~vVGvPkTIDNDi~~td~tiGfdTA~~~~~eaid~l~dtassh~r~~iv 168 (347)
T COG0205 89 NLKKLGIDALVVIGGDGSYTGAALLAEEGGIPVVGVPKTIDNDISGTDFTIGFDTALETAVEAIDNLRDTASSHERIFIV 168 (347)
T ss_pred HHHHcCCCEEEEECCCChHHHHHHHHHhcCCcEEecCCCccCCCcccccCccHHHHHHHHHHHHHHHHHHHhCcCCEEEE
Confidence 48899999999998765432111233444488888883 34432221 333445556666666677899999
Q ss_pred cCCCCChHHHHHHHHHH
Q 019212 170 CKAGRGRSTTVVICYLV 186 (344)
Q Consensus 170 C~~G~gRSgtvvaaYLm 186 (344)
=.+|++-+-..+.|-|.
T Consensus 169 eVMGR~aG~lAl~aglA 185 (347)
T COG0205 169 EVMGRHAGWLALAAGLA 185 (347)
T ss_pred EecCcChhHHHHHHHHh
Confidence 99998777555555443
No 112
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=22.79 E-value=5.8e+02 Score=23.19 Aligned_cols=117 Identities=10% Similarity=0.070 Sum_probs=66.9
Q ss_pred hHHHhcCCcEEEEcCCCCCC-CCCc------ccccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEcC
Q 019212 99 PCLKELGVGGVITLNEPYET-LVPT------SLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICENALSRQTTYVHCK 171 (344)
Q Consensus 99 ~~Lk~~GI~~VInL~~~~e~-~~~~------~~~~~~GI~yl~iPv~D~~~~p~~~~l~~~v~fI~~~~~~g~~VLVHC~ 171 (344)
+.+++.|+...+++..-..+ ..+. ....+.|...+.++ |.......+++.+.+..+.+.... .++-+||.
T Consensus 122 ~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~--Dt~G~~~P~~v~~li~~l~~~~~~-~~~~~H~H 198 (265)
T cd03174 122 EAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLK--DTVGLATPEEVAELVKALREALPD-VPLGLHTH 198 (265)
T ss_pred HHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEec--hhcCCcCHHHHHHHHHHHHHhCCC-CeEEEEeC
Confidence 35678999999998432220 0111 13445777776655 544567778999999998887643 78888887
Q ss_pred CCCChHHHHHHHHHHH---------------hcCCCHHHHHHHHHhhCCCCCCCHHHHHHHH
Q 019212 172 AGRGRSTTVVICYLVH---------------HKQMTPDAAYDYVRSIRPRVLLASAQWQAVL 218 (344)
Q Consensus 172 ~G~gRSgtvvaaYLm~---------------~~g~s~~eAl~~Vr~~Rp~i~~~~~q~~~L~ 218 (344)
.-.|=..+-+.+.+.. ..+.+.++.+.+++..-.....+...+..+.
T Consensus 199 n~~gla~an~laA~~aG~~~id~s~~G~G~~~Gn~~~e~~~~~l~~~~~~~~~~~~~l~~~~ 260 (265)
T cd03174 199 NTLGLAVANSLAALEAGADRVDGSVNGLGERAGNAATEDLVAALEGLGIDTGIDLEKLLEIS 260 (265)
T ss_pred CCCChHHHHHHHHHHcCCCEEEeccccccccccCccHHHHHHHHHhcCCCCCCCHHHHHHHH
Confidence 6554443322222211 2234566666666665433334444444443
No 113
>PRK13938 phosphoheptose isomerase; Provisional
Probab=22.30 E-value=1.6e+02 Score=26.60 Aligned_cols=42 Identities=12% Similarity=0.090 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCeEEEEcCCCCChHHHHHHHHHHH
Q 019212 143 APSLGDICRAVDFICENALSRQTTYVHCKAGRGRSTTVVICYLVH 187 (344)
Q Consensus 143 ~p~~~~l~~~v~fI~~~~~~g~~VLVHC~~G~gRSgtvvaaYLm~ 187 (344)
....+.+.++.+.+.+.+.++++|++ .|.|+|+.++..+-.+
T Consensus 25 ~~~~~~~~~~a~~~~~~l~~g~rI~i---~G~G~S~~~A~~fa~~ 66 (196)
T PRK13938 25 RVLLEAARAIGDRLIAGYRAGARVFM---CGNGGSAADAQHFAAE 66 (196)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCEEEE---EeCcHHHHHHHHHHHH
Confidence 34567788888888888889999998 4888888887765544
No 114
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=22.01 E-value=83 Score=30.12 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=21.4
Q ss_pred CCCChHHHHHHHHHHHhcCCCHHHHHHH
Q 019212 172 AGRGRSTTVVICYLVHHKQMTPDAAYDY 199 (344)
Q Consensus 172 ~G~gRSgtvvaaYLm~~~g~s~~eAl~~ 199 (344)
-|.||||+-+.+-|+ .|++.++|.++
T Consensus 164 PGiSRSG~TI~~~l~--~G~~r~~Aa~f 189 (268)
T PRK00281 164 PGTSRSGATISGGLL--LGLSREAAAEF 189 (268)
T ss_pred CCCCccHHHHHHHHH--cCCCHHHHHHH
Confidence 599999988887666 59999998765
No 115
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=21.89 E-value=4.6e+02 Score=26.85 Aligned_cols=123 Identities=15% Similarity=0.163 Sum_probs=63.7
Q ss_pred HhcCCcEEEEcCCCCCCC-CCcccccccCcEEEEEecCCCC----CCCCHHHHHHHHHHHHHHhcCC-CeEEEEcCC---
Q 019212 102 KELGVGGVITLNEPYETL-VPTSLYHAHCIDHLVIPTRDYC----FAPSLGDICRAVDFICENALSR-QTTYVHCKA--- 172 (344)
Q Consensus 102 k~~GI~~VInL~~~~e~~-~~~~~~~~~GI~yl~iPv~D~~----~~p~~~~l~~~v~fI~~~~~~g-~~VLVHC~~--- 172 (344)
.++|-.+|.+|....... .-....+...+-.=.+|+-+-. .....-..+.+++.|+++.++| --+-|||.-
T Consensus 86 ~~~GADtvMDLStggdl~~iR~~il~~~~vpvGTVPiYqa~~~~~~~~~~~t~d~~~~~ie~qa~~GVDfmtiH~git~~ 165 (420)
T PF01964_consen 86 EKAGADTVMDLSTGGDLDEIRRAILENSPVPVGTVPIYQAAIRKGGSIVDMTEDDFFDVIEKQAKDGVDFMTIHCGITRE 165 (420)
T ss_dssp HHTT-SEEEE---STTHHHHHHHHHHT-SS-EEE-HHHHHHHHTTT-GGG--HHHHHHHHHHHHHHT--EEEE-TT--GG
T ss_pred HHhCCCEEEEcCCCCCHHHHHHHHHHhCCCccccchHHHHHHHhCCChhhCCHHHHHHHHHHHHHcCCCEEEEccchhHH
Confidence 369999999997654320 0011223333444445543211 1111223457778888887766 578899951
Q ss_pred -------------CCChHHHHHHHHHHHhcCCC-----HHHHHHHHHh----------hCCCCCC---CHHHHHHHHHHH
Q 019212 173 -------------GRGRSTTVVICYLVHHKQMT-----PDAAYDYVRS----------IRPRVLL---ASAQWQAVLEYY 221 (344)
Q Consensus 173 -------------G~gRSgtvvaaYLm~~~g~s-----~~eAl~~Vr~----------~Rp~i~~---~~~q~~~L~~f~ 221 (344)
=.||.|+++++|+++...-+ +++.++..|. .||.... +..|+..|....
T Consensus 166 ~~~~~~~~~R~~giVSRGGs~l~~WM~~n~~ENPly~~fD~lLeI~k~yDVtLSLGDglRPG~i~Da~D~aQi~EL~~lg 245 (420)
T PF01964_consen 166 TLERLKKSGRIMGIVSRGGSILAAWMLHNGKENPLYEHFDRLLEIAKEYDVTLSLGDGLRPGCIADATDRAQIQELIILG 245 (420)
T ss_dssp GGGGGT--TSSS----HHHHHHHHHHHHHTS--HHHHTHHHHHHHHTTTT-EEEE--TT--SSGGGTT-HHHHHHHHHHH
T ss_pred HHHHHhhhccccCccccchHHHHHHHHhcCCcCcHHHhHHHHHHHHHHhCeeEecccccCCCCcCCCCcHHHHHHHHHHH
Confidence 25999999999999877664 4555666654 7888765 457777776655
Q ss_pred HHH
Q 019212 222 NLR 224 (344)
Q Consensus 222 ~~~ 224 (344)
++-
T Consensus 246 eL~ 248 (420)
T PF01964_consen 246 ELV 248 (420)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 116
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=21.84 E-value=1.2e+02 Score=28.50 Aligned_cols=70 Identities=14% Similarity=0.147 Sum_probs=45.1
Q ss_pred cCCCCCCChhHHHhcCCcEEEEcCCCCCCCCCc--ccccccCcEEEEEecCCCCCC-CCHHHHHHHHHHHHHHh
Q 019212 90 GAVPFPTDVPCLKELGVGGVITLNEPYETLVPT--SLYHAHCIDHLVIPTRDYCFA-PSLGDICRAVDFICENA 160 (344)
Q Consensus 90 G~~p~a~d~~~Lk~~GI~~VInL~~~~e~~~~~--~~~~~~GI~yl~iPv~D~~~~-p~~~~l~~~v~fI~~~~ 160 (344)
|++....|...+++++|+.||+=..+.. .... ....+.||..+-+.=...+.. .....++++++++.+.+
T Consensus 175 gPfs~e~n~aL~~~~~i~~lVtK~SG~~-g~~eKi~AA~~lgi~vivI~RP~~~~~~~~~~~~~e~~~~l~~~~ 247 (248)
T PRK08057 175 GPFSLELERALLRQHRIDVVVTKNSGGA-GTEAKLEAARELGIPVVMIARPALPYADREFEDVAELVAWLRHLL 247 (248)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEcCCCch-hhHHHHHHHHHcCCeEEEEeCCCCCCCCcccCCHHHHHHHHHHhh
Confidence 3344445778899999999998765533 2222 255678998887754442222 44577888888887653
No 117
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=21.63 E-value=1.3e+02 Score=28.28 Aligned_cols=55 Identities=9% Similarity=-0.017 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEcCCCCChHHHHHHHH------HHHhcCCCHHHHHHHHH
Q 019212 147 GDICRAVDFICENALSRQTTYVHCKAGRGRSTTVVICY------LVHHKQMTPDAAYDYVR 201 (344)
Q Consensus 147 ~~l~~~v~fI~~~~~~g~~VLVHC~~G~gRSgtvvaaY------Lm~~~g~s~~eAl~~Vr 201 (344)
.+..-+.++|+-+...+.||.|||........-++-.| +++.+.=++++|-++++
T Consensus 111 ~Q~~vf~~ql~lA~~~~~Pv~iH~r~a~~~~~~il~~~~~~~~~i~H~fsG~~~~a~~~l~ 171 (258)
T PRK11449 111 RQQWLLDEQLKLAKRYDLPVILHSRRTHDKLAMHLKRHDLPRTGVVHGFSGSLQQAERFVQ 171 (258)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEecCccHHHHHHHHhcCCCCCeEEEcCCCCHHHHHHHHH
Confidence 34555555666666669999999987554444433332 11111225666666555
No 118
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=21.56 E-value=2.2e+02 Score=22.29 Aligned_cols=29 Identities=14% Similarity=0.133 Sum_probs=18.2
Q ss_pred cCCCeEEEEcCCCCChHHHHHHHHHHHhcCCC
Q 019212 161 LSRQTTYVHCKAGRGRSTTVVICYLVHHKQMT 192 (344)
Q Consensus 161 ~~g~~VLVHC~~G~gRSgtvvaaYLm~~~g~s 192 (344)
..+++++|+|..|. ||..+ +. .++..|.+
T Consensus 56 ~~~~~ivv~c~~g~-~s~~a-~~-~L~~~G~~ 84 (108)
T PRK00162 56 DFDTPVMVMCYHGN-SSQGA-AQ-YLLQQGFD 84 (108)
T ss_pred CCCCCEEEEeCCCC-CHHHH-HH-HHHHCCch
Confidence 45789999999886 55433 22 34445553
No 119
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=21.52 E-value=98 Score=23.83 Aligned_cols=16 Identities=31% Similarity=0.565 Sum_probs=12.7
Q ss_pred CeEEEEcCCCCChHHH
Q 019212 164 QTTYVHCKAGRGRSTT 179 (344)
Q Consensus 164 ~~VLVHC~~G~gRSgt 179 (344)
++|++.|..|.|=|..
T Consensus 1 ~kilvvCg~G~gtS~m 16 (87)
T cd05567 1 KKIVFACDAGMGSSAM 16 (87)
T ss_pred CEEEEECCCCccHHHH
Confidence 4799999999986543
No 120
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=21.40 E-value=1.2e+02 Score=26.62 Aligned_cols=26 Identities=8% Similarity=-0.133 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEcCC
Q 019212 147 GDICRAVDFICENALSRQTTYVHCKA 172 (344)
Q Consensus 147 ~~l~~~v~fI~~~~~~g~~VLVHC~~ 172 (344)
..+.-++++++++..+|.+|+|+|..
T Consensus 13 ~~~~~acrL~~Ka~~~G~rv~I~~~d 38 (154)
T PRK06646 13 LLLKSILLLIEKCYYSDLKSVILTAD 38 (154)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEcCC
Confidence 35667788888899999999999954
No 121
>TIGR03642 cas_csx13 CRISPR-associated protein, Csx13 family. This model describes a protein N-terminal protein sequence domain strictly associated with CRISPR and CRISPR-associated protein systems. This model and TIGR02584 identify two separate clades from a larger homology domain family, both CRISPR-associated, while other homologs are found that may not be. Members are found in bacteria that include Pelotomaculum thermopropionicum SI, Thermoanaerobacter tengcongensis MB4, and Roseiflexus sp. RS-1, and in archaea that include Thermoplasma volcanium, Picrophilus torridus, and Methanospirillum hungatei. The molecular function is unknown.
Probab=21.01 E-value=2.4e+02 Score=23.84 Aligned_cols=56 Identities=11% Similarity=0.086 Sum_probs=31.5
Q ss_pred EEEEecCCCCCCCCHHHHHHHHHHHHH----HhcCCCe-EEEEcCCCCChHHHHHHHHHHHhcC
Q 019212 132 HLVIPTRDYCFAPSLGDICRAVDFICE----NALSRQT-TYVHCKAGRGRSTTVVICYLVHHKQ 190 (344)
Q Consensus 132 yl~iPv~D~~~~p~~~~l~~~v~fI~~----~~~~g~~-VLVHC~~G~gRSgtvvaaYLm~~~g 190 (344)
-+.+|+.|.. +.++...+.++|.+ ...+++. .+--|-+|--++-++.++|.+..++
T Consensus 56 ~i~~~~~DI~---t~~d~~~~~~~I~~~i~~l~~~~~~~~lh~~iaGGRK~Ms~~~~~a~sl~g 116 (124)
T TIGR03642 56 KIPLKFDDIL---SDEDILTFMSIAAKEVKKERENYGCERIIVNISGGRKIMTIILALYAQLLF 116 (124)
T ss_pred EeccCccccC---CHHHHHHHHHHHHHHHHHHhhCCCcceEEEEecCCHHHHHHHHHHHHHHhC
Confidence 3345555543 33444444444444 3333442 3445667766787888888877666
No 122
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=20.98 E-value=68 Score=30.60 Aligned_cols=93 Identities=15% Similarity=0.210 Sum_probs=54.7
Q ss_pred eecCcEEEcCCCCC-CChhHHHhcCCcEEEEcCCCCCCCCCc---ccccccCcEEEEEecCCCCC-CC---CHHHHHHHH
Q 019212 82 RVDEFLLLGAVPFP-TDVPCLKELGVGGVITLNEPYETLVPT---SLYHAHCIDHLVIPTRDYCF-AP---SLGDICRAV 153 (344)
Q Consensus 82 ~I~~~LylG~~p~a-~d~~~Lk~~GI~~VInL~~~~e~~~~~---~~~~~~GI~yl~iPv~D~~~-~p---~~~~l~~~v 153 (344)
++.+ .-+|+.--. .-.++|++++|+.|||.+.++-..... ...+..||.|+.+.-..... .+ ...++.+++
T Consensus 43 ~~~~-~~~~G~l~~e~l~~~l~e~~i~llIDATHPyAa~iS~Na~~aake~gipy~r~eRP~~~~~gd~~~~V~d~~ea~ 121 (257)
T COG2099 43 QIGP-VRVGGFLGAEGLAAFLREEGIDLLIDATHPYAARISQNAARAAKETGIPYLRLERPPWAPNGDNWIEVADIEEAA 121 (257)
T ss_pred ccCC-eeecCcCCHHHHHHHHHHcCCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEEECCccccCCCceEEecCHHHHH
Confidence 3444 334443333 455788999999999999876532221 25677899998875433211 12 345667777
Q ss_pred HHHHHHhcCCCeEEEEcCCCCChHHHH
Q 019212 154 DFICENALSRQTTYVHCKAGRGRSTTV 180 (344)
Q Consensus 154 ~fI~~~~~~g~~VLVHC~~G~gRSgtv 180 (344)
+.+.+. +++||. +.|..--..+
T Consensus 122 ~~~~~~---~~rVfl--t~G~~~l~~f 143 (257)
T COG2099 122 EAAKQL---GRRVFL--TTGRQNLAHF 143 (257)
T ss_pred HHHhcc---CCcEEE--ecCccchHHH
Confidence 666544 566666 4454333333
No 123
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=20.88 E-value=1.1e+02 Score=23.55 Aligned_cols=18 Identities=22% Similarity=0.632 Sum_probs=13.5
Q ss_pred cCCCeEEEEcCCCCChHHH
Q 019212 161 LSRQTTYVHCKAGRGRSTT 179 (344)
Q Consensus 161 ~~g~~VLVHC~~G~gRSgt 179 (344)
..+++|+|+|..|. ||..
T Consensus 52 ~~~~~iv~~c~~g~-~s~~ 69 (99)
T cd01527 52 VGANAIIFHCRSGM-RTQQ 69 (99)
T ss_pred CCCCcEEEEeCCCc-hHHH
Confidence 45689999999884 5544
No 124
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=20.34 E-value=1.1e+02 Score=33.30 Aligned_cols=46 Identities=17% Similarity=0.152 Sum_probs=30.9
Q ss_pred ccccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHhcCC--CeEEEEcCCCCCh
Q 019212 123 SLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICENALSR--QTTYVHCKAGRGR 176 (344)
Q Consensus 123 ~~~~~~GI~yl~iPv~D~~~~p~~~~l~~~v~fI~~~~~~g--~~VLVHC~~G~gR 176 (344)
.+|++.|+.|+ -|++.+ ++++.++.+++....+ +||+||-..-.|+
T Consensus 320 ~lFe~lG~~Y~-GpvDGH-------di~~Li~~l~~~k~~~~~~PvlvHv~T~KGk 367 (701)
T PLN02225 320 TLFEELGLYYI-GPVDGH-------NIEDLVCVLREVSSLDSMGPVLVHVITEENR 367 (701)
T ss_pred CcHHHcCCeEE-CccCCC-------CHHHHHHHHHHHHcCCCCCCEEEEEEecCCC
Confidence 57899999995 566664 3444444444444444 8999998766665
No 125
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=20.03 E-value=1e+02 Score=28.21 Aligned_cols=21 Identities=19% Similarity=0.468 Sum_probs=18.6
Q ss_pred HHHHHhcCCCHHHHHHHHHhh
Q 019212 183 CYLVHHKQMTPDAAYDYVRSI 203 (344)
Q Consensus 183 aYLm~~~g~s~~eAl~~Vr~~ 203 (344)
..||+.+|+|.++|++++|..
T Consensus 152 glLM~~~g~sE~EAy~~lR~~ 172 (194)
T COG3707 152 GLLMKRRGLSEEEAYKLLRRT 172 (194)
T ss_pred HHHHHHhCCCHHHHHHHHHHH
Confidence 479999999999999999863
Done!