BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019213
         (344 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9UPQ0|LIMC1_HUMAN LIM and calponin homology domains-containing protein 1 OS=Homo
           sapiens GN=LIMCH1 PE=1 SV=4
          Length = 1083

 Score = 34.7 bits (78), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 6/57 (10%)

Query: 16  NNQEDQQHNPANPI-TPENWFW-YKNEDISYKQGASFELWQQQAELLLQQRQQQQQD 70
           N+Q D   +  +P+ TP+  FW +  E+   +Q    E WQQ+ E LLQ+R Q++QD
Sbjct: 745 NSQVDSPSSEKSPVMTPQFKFWAWDPEEERRRQ----EKWQQEQERLLQERYQKEQD 797


>sp|Q8C2P3|DUS1L_MOUSE tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Mus
           musculus GN=Dus1l PE=2 SV=1
          Length = 475

 Score = 33.1 bits (74), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 15/36 (41%), Gaps = 4/36 (11%)

Query: 119 SCQDCGNQAKKDCAHMRCRTCCKSRGF----DCQTH 150
            C  CGN     C    CR CCK R F    DC  H
Sbjct: 396 KCDQCGNPKGNRCVFNLCRGCCKKRAFRETADCPGH 431


>sp|O15534|PER1_HUMAN Period circadian protein homolog 1 OS=Homo sapiens GN=PER1 PE=1
           SV=2
          Length = 1290

 Score = 32.7 bits (73), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 25/51 (49%)

Query: 275 IQLQPLNLVTAGAGPDPVNTTATPVSPAAAAVTASSSTAAFLDPSSLYPTP 325
           +Q  PL + +   GP P+    T V PAA      +   A + P+ L+PTP
Sbjct: 881 VQPYPLPVFSPRGGPQPLPPAPTSVPPAAFPAPLVTPMVALVLPNYLFPTP 931


>sp|B1V8R6|ENO_PHYAS Enolase OS=Phytoplasma australiense GN=eno PE=3 SV=1
          Length = 430

 Score = 32.7 bits (73), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 167 QLALQQQRLQLRGETNKRPREANPI-SSSLACSRLPANASGFEVAENLPG 215
           Q  + Q  +QL G  NK    AN I   SLAC+R  A+  G E+ E + G
Sbjct: 87  QALIDQTLIQLDGTPNKSKLGANAILGVSLACARAAADYLGLELYEYIAG 136


>sp|Q8K582|DUS1L_RAT tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Rattus
           norvegicus GN=Dus1l PE=2 SV=1
          Length = 438

 Score = 32.7 bits (73), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 15/36 (41%), Gaps = 4/36 (11%)

Query: 119 SCQDCGNQAKKDCAHMRCRTCCKSRGF----DCQTH 150
            C  CGN     C    CR CCK R F    DC  H
Sbjct: 396 KCDQCGNPKGNRCVFNLCRGCCKKRAFRETADCPGH 431


>sp|O35973|PER1_MOUSE Period circadian protein homolog 1 OS=Mus musculus GN=Per1 PE=1
           SV=2
          Length = 1291

 Score = 32.3 bits (72), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 25/51 (49%)

Query: 275 IQLQPLNLVTAGAGPDPVNTTATPVSPAAAAVTASSSTAAFLDPSSLYPTP 325
           +Q  PL + +   GP P+    T VSPA       +   A + P+ L+PTP
Sbjct: 880 VQPYPLPVFSPRGGPQPLPPAPTSVSPATFPSPLVTPMVALVLPNYLFPTP 930


>sp|Q3UH68|LIMC1_MOUSE LIM and calponin homology domains-containing protein 1 OS=Mus
           musculus GN=Limch1 PE=1 SV=2
          Length = 1057

 Score = 32.0 bits (71), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 5/37 (13%)

Query: 34  WFWYKNEDISYKQGASFELWQQQAELLLQQRQQQQQD 70
           W W   E+   +     E WQQ+ E LLQ+R Q++QD
Sbjct: 766 WAWDPEEERRRQ-----EKWQQEQERLLQERYQKEQD 797


>sp|Q8R1U1|COG4_MOUSE Conserved oligomeric Golgi complex subunit 4 OS=Mus musculus
           GN=Cog4 PE=2 SV=1
          Length = 785

 Score = 31.6 bits (70), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 40/103 (38%), Gaps = 11/103 (10%)

Query: 135 RCRTCCKSRGFDCQTHVKSTWVAASKRREKQQQLALQQQRLQLRGETNK-RPREANPI-- 191
           R  T  K    +C T V+       K+R+  QQ  L Q  L     T K  PRE +P+  
Sbjct: 298 RLFTLIKYLQVECDTQVEKVVNKFIKQRDYHQQFRLVQSNLMRNSATEKIEPRELDPVLT 357

Query: 192 -------SSSLACSRLPANASG-FEVAENLPGEVSTQAVFRCV 226
                   S L    L    S  FEV +++  E   Q   +C+
Sbjct: 358 EVTLMNARSELYLRFLRKRISADFEVGDSMASEEVKQEHQKCL 400


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.126    0.371 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 126,025,975
Number of Sequences: 539616
Number of extensions: 5278521
Number of successful extensions: 28171
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 26844
Number of HSP's gapped (non-prelim): 1127
length of query: 344
length of database: 191,569,459
effective HSP length: 118
effective length of query: 226
effective length of database: 127,894,771
effective search space: 28904218246
effective search space used: 28904218246
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)