Query 019213
Match_columns 344
No_of_seqs 96 out of 98
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 12:38:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019213.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019213hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gmg_A Hypothetical protein PF 62.2 2.8 9.5E-05 34.8 1.4 22 118-139 68-90 (105)
2 3qt1_I DNA-directed RNA polyme 49.8 5.2 0.00018 33.7 1.1 23 117-139 24-52 (133)
3 3iot_A Maltose-binding protein 39.3 5.5 0.00019 36.6 -0.4 14 51-64 385-398 (449)
4 3h0g_I DNA-directed RNA polyme 38.8 8.7 0.0003 31.0 0.8 21 119-139 6-32 (113)
5 2kdx_A HYPA, hydrogenase/ureas 38.1 9.6 0.00033 30.5 0.9 24 117-140 73-97 (119)
6 1twf_I B12.6, DNA-directed RNA 31.7 7.9 0.00027 31.7 -0.6 38 213-253 75-112 (122)
7 1fmb_A EIAV protease; hydrolas 31.3 29 0.00098 27.9 2.7 21 242-263 11-31 (104)
8 2hs1_A HIV-1 protease; ultra-h 28.6 33 0.0011 27.6 2.5 21 242-263 11-31 (99)
9 3ec0_A Protease; HIV-2, inhibi 25.8 43 0.0015 27.1 2.8 21 242-263 11-31 (99)
10 1ycy_A Conserved hypothetical 25.7 27 0.00091 27.3 1.5 20 242-261 19-39 (71)
11 1weo_A Cellulose synthase, cat 24.4 26 0.00088 28.7 1.2 23 117-139 16-49 (93)
12 3sqf_A Protease; folded monome 22.0 50 0.0017 27.4 2.5 21 242-263 12-32 (114)
13 2k2d_A Ring finger and CHY zin 20.8 28 0.00096 26.9 0.7 23 117-139 37-61 (79)
No 1
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=62.16 E-value=2.8 Score=34.82 Aligned_cols=22 Identities=32% Similarity=0.706 Sum_probs=15.6
Q ss_pred ccccccccccc-ccCCCcccccc
Q 019213 118 MSCQDCGNQAK-KDCAHMRCRTC 139 (344)
Q Consensus 118 ~~CQDCGNQAK-KDC~h~RCRTC 139 (344)
..|.|||+.-. +-=.-.||..|
T Consensus 68 ~~C~~CG~~F~~~~~kPsrCP~C 90 (105)
T 2gmg_A 68 AQCRKCGFVFKAEINIPSRCPKC 90 (105)
T ss_dssp CBBTTTCCBCCCCSSCCSSCSSS
T ss_pred cChhhCcCeecccCCCCCCCcCC
Confidence 39999999971 11234788888
No 2
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=49.83 E-value=5.2 Score=33.70 Aligned_cols=23 Identities=39% Similarity=0.837 Sum_probs=17.6
Q ss_pred Ccccccccc--ccccc----CCCcccccc
Q 019213 117 GMSCQDCGN--QAKKD----CAHMRCRTC 139 (344)
Q Consensus 117 g~~CQDCGN--QAKKD----C~h~RCRTC 139 (344)
-.-|.+||| ..|.| .....||+|
T Consensus 24 ~~FCPeCgNmL~pked~~~~~l~~~CrtC 52 (133)
T 3qt1_I 24 FRFCRDCNNMLYPREDKENNRLLFECRTC 52 (133)
T ss_dssp CCBCTTTCCBCBCCBCTTTCCBCCBCSSS
T ss_pred CeeCCCCCCEeeECccCCCceeEEECCCC
Confidence 347999999 44543 667899999
No 3
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=39.31 E-value=5.5 Score=36.63 Aligned_cols=14 Identities=36% Similarity=0.344 Sum_probs=2.0
Q ss_pred ccchhhHHHHHHhh
Q 019213 51 ELWQQQAELLLQQR 64 (344)
Q Consensus 51 elWq~~q~~~~~~q 64 (344)
+-|||+||+..|||
T Consensus 385 ~~~~~~~~~~~~~~ 398 (449)
T 3iot_A 385 KSFQQQQQQQQQQQ 398 (449)
T ss_dssp HHTC----------
T ss_pred HhhccccccccCCC
Confidence 44554444433433
No 4
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=38.81 E-value=8.7 Score=31.04 Aligned_cols=21 Identities=33% Similarity=1.001 Sum_probs=16.2
Q ss_pred ccccccc--ccccc----CCCcccccc
Q 019213 119 SCQDCGN--QAKKD----CAHMRCRTC 139 (344)
Q Consensus 119 ~CQDCGN--QAKKD----C~h~RCRTC 139 (344)
-|.+||| ..|++ .....||+|
T Consensus 6 FCp~Cgn~L~~~~~~~~~~~~~~C~~C 32 (113)
T 3h0g_I 6 YCIECNNMLYPREDKVDRVLRLACRNC 32 (113)
T ss_dssp CCSSSCCCCEECCCTTTCCCCEECSSS
T ss_pred eCcCCCCEeeEcccCCCCeeEEECCCC
Confidence 6999999 34543 667899999
No 5
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=38.06 E-value=9.6 Score=30.54 Aligned_cols=24 Identities=25% Similarity=0.746 Sum_probs=19.8
Q ss_pred CcccccccccccccCCCc-cccccc
Q 019213 117 GMSCQDCGNQAKKDCAHM-RCRTCC 140 (344)
Q Consensus 117 g~~CQDCGNQAKKDC~h~-RCRTCC 140 (344)
-..|.|||+.-..+=.+. +|..|-
T Consensus 73 ~~~C~~CG~~~e~~~~~~~~CP~Cg 97 (119)
T 2kdx_A 73 ELECKDCSHVFKPNALDYGVCEKCH 97 (119)
T ss_dssp EEECSSSSCEECSCCSTTCCCSSSS
T ss_pred eEEcCCCCCEEeCCCCCCCcCcccc
Confidence 569999999988777777 888873
No 6
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=31.74 E-value=7.9 Score=31.69 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=22.8
Q ss_pred CCccccccceeeEEEeeccCCCccceeEEEEEeecceeeee
Q 019213 213 LPGEVSTQAVFRCVKVSGIDDSEDQFAYQTSVNIGGHLFKG 253 (344)
Q Consensus 213 fP~eV~s~AvFRCVRVssvdd~e~E~AYQt~V~IgGHVFKG 253 (344)
=|.=-.-.|+|.=++.++-|++.- -|-.-++ =||.|+-
T Consensus 75 Cp~C~~~~a~~~q~q~rsade~~t--~fy~C~~-C~~~w~~ 112 (122)
T 1twf_I 75 CPKCHSRENVFFQSQQRRKDTSMV--LFFVCLS-CSHIFTS 112 (122)
T ss_dssp CTTTCCCCEEEEECSSCCTTCCCC--EEEEETT-TCCEEEC
T ss_pred CCCCCCCEEEEEEecCccCCCCce--EEEEeCC-CCCEecc
Confidence 344445578888888888776642 2333333 5787764
No 7
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A*
Probab=31.33 E-value=29 Score=27.94 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=17.4
Q ss_pred EEEeecceeeeeeecccCCCCC
Q 019213 242 TSVNIGGHLFKGILYDQGPEST 263 (344)
Q Consensus 242 t~V~IgGHVFKGiLYDqG~e~~ 263 (344)
-+|+|+|+.|++ |-|.|.|..
T Consensus 11 v~v~I~Gq~~e~-LLDTGAD~T 31 (104)
T 1fmb_A 11 TIVLINDTPLNV-LLDTGADTS 31 (104)
T ss_dssp EEEEETTEEEEE-EECTTCSSC
T ss_pred EEEEECCEEEEE-EeccCCCcE
Confidence 369999998887 559999876
No 8
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ...
Probab=28.56 E-value=33 Score=27.65 Aligned_cols=21 Identities=33% Similarity=0.735 Sum_probs=17.7
Q ss_pred EEEeecceeeeeeecccCCCCC
Q 019213 242 TSVNIGGHLFKGILYDQGPEST 263 (344)
Q Consensus 242 t~V~IgGHVFKGiLYDqG~e~~ 263 (344)
-+|+|+|+.+++. -|.|.|+.
T Consensus 11 vtvkI~Gq~~eaL-LDTGAD~T 31 (99)
T 2hs1_A 11 VTIKIGGQLKEAL-LDTGADDT 31 (99)
T ss_dssp EEEEETTEEEEEE-ECTTCSSE
T ss_pred EEEEECCEEEEEE-eccCCCcE
Confidence 3699999999985 59999976
No 9
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ...
Probab=25.83 E-value=43 Score=27.10 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=17.7
Q ss_pred EEEeecceeeeeeecccCCCCC
Q 019213 242 TSVNIGGHLFKGILYDQGPEST 263 (344)
Q Consensus 242 t~V~IgGHVFKGiLYDqG~e~~ 263 (344)
.+|+|+|+.+++. -|-|.|+.
T Consensus 11 vti~I~Gq~~e~L-LDTGAD~T 31 (99)
T 3ec0_A 11 VTAYIEGQPVEVL-LDTGADDS 31 (99)
T ss_dssp EEEEETTEEEEEE-ECTTCSSC
T ss_pred EEEEECCEEEEEE-EecCCCce
Confidence 4699999998885 59999976
No 10
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=25.72 E-value=27 Score=27.28 Aligned_cols=20 Identities=45% Similarity=0.755 Sum_probs=13.2
Q ss_pred EEEeecc-eeeeeeecccCCC
Q 019213 242 TSVNIGG-HLFKGILYDQGPE 261 (344)
Q Consensus 242 t~V~IgG-HVFKGiLYDqG~e 261 (344)
-+|.||| |-|.|||-|---|
T Consensus 19 vAv~vg~ehSFtGiledFDeE 39 (71)
T 1ycy_A 19 VAVSVGGDHSFTGTLEDFDEE 39 (71)
T ss_dssp EEEEEC----CEEEEEEECSS
T ss_pred EEEEecCcceeeeehhhcCcc
Confidence 3677876 9999999887655
No 11
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=24.40 E-value=26 Score=28.71 Aligned_cols=23 Identities=43% Similarity=1.086 Sum_probs=20.4
Q ss_pred Cccccccccc-----------ccccCCCcccccc
Q 019213 117 GMSCQDCGNQ-----------AKKDCAHMRCRTC 139 (344)
Q Consensus 117 g~~CQDCGNQ-----------AKKDC~h~RCRTC 139 (344)
+-.||-||-. |=.+|.+--||.|
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpC 49 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPC 49 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHH
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHH
Confidence 5799999988 6678999999999
No 12
>3sqf_A Protease; folded monomer, retropepsin, D-type retrovirus; 1.63A {Mason-pfizer monkey virus} SCOP: b.50.1.1 PDB: 1nso_A
Probab=21.96 E-value=50 Score=27.43 Aligned_cols=21 Identities=19% Similarity=0.539 Sum_probs=17.8
Q ss_pred EEEeecceeeeeeecccCCCCC
Q 019213 242 TSVNIGGHLFKGILYDQGPEST 263 (344)
Q Consensus 242 t~V~IgGHVFKGiLYDqG~e~~ 263 (344)
.+|+|+|+.++++ -|-|.|+.
T Consensus 12 vti~I~Gq~~eaL-LDTGADdT 32 (114)
T 3sqf_A 12 LTLWLDDKMFTGL-INTGADVT 32 (114)
T ss_dssp EEEEETTEEEEEE-ECTTCSSC
T ss_pred EEEEECCEEEEEE-EccCCCce
Confidence 4699999999996 59999865
No 13
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=20.76 E-value=28 Score=26.92 Aligned_cols=23 Identities=26% Similarity=0.823 Sum_probs=17.8
Q ss_pred Ccccccccc--cccccCCCcccccc
Q 019213 117 GMSCQDCGN--QAKKDCAHMRCRTC 139 (344)
Q Consensus 117 g~~CQDCGN--QAKKDC~h~RCRTC 139 (344)
-+.|.||++ +++-.-...+|..|
T Consensus 37 ~I~CnDC~~~s~v~~h~lg~kC~~C 61 (79)
T 2k2d_A 37 DILCNDCNGRSTVQFHILGMKCKIC 61 (79)
T ss_dssp EEEESSSCCEEEEECCTTCCCCTTT
T ss_pred EEECCCCCCCccCCceeecccCcCC
Confidence 358999998 56666666789886
Done!