Your job contains 1 sequence.
>019214
MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV
NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK
YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK
KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV
SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW
SGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMFSLCFQDSVLN
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 019214
(344 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2028563 - symbol:AT1G48900 species:3702 "Arabi... 1508 1.2e-154 1
TAIR|locus:2037803 - symbol:ATHSRP54A "signal recognition... 1422 1.5e-145 1
TAIR|locus:2157809 - symbol:AT5G49500 "AT5G49500" species... 1317 2.0e-134 1
ZFIN|ZDB-GENE-040426-818 - symbol:srp54 "signal recogniti... 1112 1.1e-112 1
UNIPROTKB|Q2T9U1 - symbol:SRP54 "Signal recognition parti... 1104 7.6e-112 1
UNIPROTKB|P61010 - symbol:SRP54 "Signal recognition parti... 1104 7.6e-112 1
UNIPROTKB|P61011 - symbol:SRP54 "Signal recognition parti... 1104 7.6e-112 1
UNIPROTKB|F2Z5M9 - symbol:SRP54 "Uncharacterized protein"... 1104 7.6e-112 1
UNIPROTKB|Q4R965 - symbol:SRP54 "Signal recognition parti... 1104 7.6e-112 1
UNIPROTKB|Q5R4R6 - symbol:SRP54 "Signal recognition parti... 1104 7.6e-112 1
RGD|2323636 - symbol:Fam177a1 "family with sequence simil... 1103 9.7e-112 1
RGD|621390 - symbol:Srp54 "signal recognition particle 54... 1103 9.7e-112 1
UNIPROTKB|E1C6G6 - symbol:SRP54 "Uncharacterized protein"... 1096 5.3e-111 1
FB|FBgn0010747 - symbol:Srp54k "Signal recognition partic... 1064 1.3e-107 1
WB|WBGene00009012 - symbol:F21D5.7 species:6239 "Caenorha... 1052 2.5e-106 1
GENEDB_PFALCIPARUM|PF14_0477 - symbol:PF14_0477 "signal r... 991 7.1e-100 1
UNIPROTKB|Q8IKX4 - symbol:PF14_0477 "Signal recognition p... 991 7.1e-100 1
DICTYBASE|DDB_G0275455 - symbol:srp54 "signal recognition... 963 6.6e-97 1
UNIPROTKB|G3V4F7 - symbol:SRP54 "Signal recognition parti... 938 3.0e-94 1
POMBASE|SPCC188.06c - symbol:srp54 "signal recognition pa... 927 4.3e-93 1
CGD|CAL0003314 - symbol:SRP54 species:5476 "Candida albic... 703 2.8e-82 2
SGD|S000006292 - symbol:SRP54 "Signal recognition particl... 803 6.0e-80 1
TIGR_CMR|GSU_0642 - symbol:GSU_0642 "signal recognition p... 465 3.9e-44 1
TAIR|locus:2150620 - symbol:CPSRP54 "chloroplast signal r... 454 5.7e-43 1
TIGR_CMR|CHY_1434 - symbol:CHY_1434 "signal recognition p... 445 5.2e-42 1
TIGR_CMR|BA_3983 - symbol:BA_3983 "signal recognition par... 444 6.6e-42 1
UNIPROTKB|P66844 - symbol:ffh "Signal recognition particl... 430 2.0e-40 1
UNIPROTKB|Q97QD2 - symbol:ffh "Signal recognition particl... 400 1.5e-39 2
TIGR_CMR|SO_1356 - symbol:SO_1356 "signal recognition par... 411 2.1e-38 1
TIGR_CMR|CBU_0450 - symbol:CBU_0450 "signal recognition p... 406 7.0e-38 1
TIGR_CMR|CPS_4073 - symbol:CPS_4073 "signal recognition p... 403 1.5e-37 1
TIGR_CMR|CJE_0809 - symbol:CJE_0809 "signal recognition p... 396 8.0e-37 1
TIGR_CMR|ECH_0475 - symbol:ECH_0475 "signal recognition p... 396 8.0e-37 1
UNIPROTKB|P0AGD7 - symbol:ffh species:83333 "Escherichia ... 395 1.0e-36 1
UNIPROTKB|O07347 - symbol:ffh "Signal recognition particl... 395 1.0e-36 1
TIGR_CMR|VC_0560 - symbol:VC_0560 "signal recognition par... 386 9.2e-36 1
NCBI_NP|NP_355632.2 - symbol:ffh "signal recognition part... 386 9.2e-36 1
TIGR_CMR|SPO_3246 - symbol:SPO_3246 "signal recognition p... 374 1.7e-34 1
TIGR_CMR|APH_0349 - symbol:APH_0349 "signal recognition p... 364 2.0e-33 1
TIGR_CMR|CHY_1442 - symbol:CHY_1442 "signal recognition p... 349 7.7e-32 1
UNIPROTKB|P83749 - symbol:ftsY "Signal recognition partic... 343 3.3e-31 1
TAIR|locus:2158103 - symbol:AT5G66970 species:3702 "Arabi... 339 8.8e-31 1
TIGR_CMR|NSE_0540 - symbol:NSE_0540 "signal recognition p... 332 4.9e-30 1
TIGR_CMR|SPO_1339 - symbol:SPO_1339 "signal recognition p... 323 4.4e-29 1
TIGR_CMR|NSE_0545 - symbol:NSE_0545 "signal recognition p... 320 9.1e-29 1
TIGR_CMR|BA_3985 - symbol:BA_3985 "signal recognition par... 314 3.9e-28 1
TIGR_CMR|SO_4586 - symbol:SO_4586 "signal recognition par... 315 7.7e-28 1
TIGR_CMR|CBU_1903 - symbol:CBU_1903 "signal recognition p... 310 1.0e-27 1
UNIPROTKB|P10121 - symbol:ftsY "SRP receptor" species:833... 305 8.8e-27 1
TIGR_CMR|VC_0147 - symbol:VC_0147 "signal recognition par... 301 9.4e-27 1
TIGR_CMR|CPS_0157 - symbol:CPS_0157 "signal recognition p... 303 1.2e-26 1
UNIPROTKB|P66842 - symbol:ftsY "Signal recognition partic... 299 1.5e-26 1
TIGR_CMR|CJE_1340 - symbol:CJE_1340 "signal recognition p... 293 6.6e-26 1
TAIR|locus:2118701 - symbol:AT4G30600 species:3702 "Arabi... 298 1.3e-25 1
TIGR_CMR|GSU_1132 - symbol:GSU_1132 "signal recognition p... 282 9.7e-25 1
TIGR_CMR|ECH_1111 - symbol:ECH_1111 "signal recognition p... 281 1.2e-24 1
UNIPROTKB|Q97QH0 - symbol:ftsY "Signal recognition partic... 280 2.3e-24 1
TIGR_CMR|APH_1227 - symbol:APH_1227 "signal recognition p... 278 2.6e-24 1
DICTYBASE|DDB_G0277377 - symbol:srpR "signal recognition ... 273 6.4e-23 1
UNIPROTKB|J9NTJ9 - symbol:SRPR "Signal recognition partic... 219 1.6e-15 1
UNIPROTKB|F1PLH3 - symbol:SRPR "Signal recognition partic... 219 1.6e-15 1
UNIPROTKB|J9P788 - symbol:SRPR "Signal recognition partic... 219 2.3e-15 1
POMBASE|SPBC3B9.03 - symbol:SPBC3B9.03 "signal recognitio... 216 2.8e-15 1
UNIPROTKB|G3V480 - symbol:SRP54 "Signal recognition parti... 195 3.2e-15 1
UNIPROTKB|F1NXV4 - symbol:SRPR "Uncharacterized protein" ... 216 3.9e-15 1
ASPGD|ASPL0000006202 - symbol:AN6627 species:162425 "Emer... 212 1.2e-14 1
UNIPROTKB|P06625 - symbol:SRPR "Signal recognition partic... 208 3.6e-14 1
SGD|S000002700 - symbol:SRP101 "Signal recognition partic... 137 2.0e-13 2
TIGR_CMR|CJE_0061 - symbol:CJE_0061 "flagellar biosynthet... 199 2.4e-13 1
UNIPROTKB|Q3V8C7 - symbol:flhF "Flagellar biogenesis prot... 197 3.5e-13 1
TIGR_CMR|GSU_3055 - symbol:GSU_3055 "flagellar biosynthet... 197 3.5e-13 1
WB|WBGene00009521 - symbol:F38A1.8 species:6239 "Caenorha... 194 1.5e-12 1
UNIPROTKB|Q722L6 - symbol:LMOf2365_0717 "Putative flagell... 188 3.1e-12 1
CGD|CAL0003010 - symbol:orf19.3952 species:5476 "Candida ... 178 8.0e-11 1
MGI|MGI:1914648 - symbol:Srpr "signal recognition particl... 177 1.4e-10 1
RGD|1311504 - symbol:Srpr "signal recognition particle re... 177 1.4e-10 1
UNIPROTKB|P08240 - symbol:SRPR "Signal recognition partic... 177 1.4e-10 1
FB|FBgn0010391 - symbol:Gtp-bp "GTP-binding protein" spec... 176 1.7e-10 1
UNIPROTKB|F1S754 - symbol:SRPR "Uncharacterized protein" ... 175 2.4e-10 1
UNIPROTKB|F1MNJ2 - symbol:SRPR "Signal recognition partic... 174 2.8e-10 1
UNIPROTKB|Q3MHE8 - symbol:SRPR "Signal recognition partic... 174 3.1e-10 1
ZFIN|ZDB-GENE-030219-11 - symbol:srpr "signal recognition... 173 4.4e-10 2
UNIPROTKB|Q81SE2 - symbol:BA_1718 "Putative flagellar bio... 154 8.0e-09 1
TIGR_CMR|BA_1718 - symbol:BA_1718 "flagellar biosynthetic... 154 8.0e-09 1
TIGR_CMR|CHY_1010 - symbol:CHY_1010 "flagellar biosynthes... 154 1.8e-08 1
UNIPROTKB|Q48GG0 - symbol:flhF "Flagellar biosynthesis pr... 146 2.4e-07 1
UNIPROTKB|G3V346 - symbol:SRP54 "Signal recognition parti... 122 4.3e-07 1
UNIPROTKB|Q8ECD1 - symbol:flhF "Flagellar polar localizat... 143 5.7e-07 1
TIGR_CMR|SO_3212 - symbol:SO_3212 "flagellar biosynthetic... 143 5.7e-07 1
UNIPROTKB|G3V3L9 - symbol:SRP54 "Signal recognition parti... 116 2.0e-06 1
UNIPROTKB|Q9KQD2 - symbol:VC_2068 "Flagellar biosynthetic... 133 8.5e-06 1
TIGR_CMR|VC_2068 - symbol:VC_2068 "flagellar biosynthetic... 133 8.5e-06 1
UNIPROTKB|Q485K6 - symbol:flhF "Flagellar biosynthetic pr... 116 0.00070 1
TIGR_CMR|CPS_1517 - symbol:CPS_1517 "flagellar biosynthet... 116 0.00070 1
>TAIR|locus:2028563 [details] [associations]
symbol:AT1G48900 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005525 "GTP binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0005786 "signal
recognition particle, endoplasmic reticulum targeting"
evidence=ISS] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=IEA] [GO:0006617 "SRP-dependent
cotranslational protein targeting to membrane, signal sequence
recognition" evidence=ISS] [GO:0008312 "7S RNA binding"
evidence=IEA;ISS] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0048500 "signal recognition particle"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0010267
"production of ta-siRNAs involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0051607 "defense response to
virus" evidence=RCA] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005829
GO:GO:0003924 GO:GO:0006184 EMBL:AC084414 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786 eggNOG:COG0541
HOGENOM:HOG000036165 KO:K03106 ProtClustDB:CLSN2686827
Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425 EMBL:U12127
EMBL:AY054273 EMBL:AY052331 EMBL:AF446864 IPI:IPI00531486
PIR:G96526 RefSeq:NP_564535.1 UniGene:At.23838
ProteinModelPortal:P49967 SMR:P49967 STRING:P49967 PaxDb:P49967
PRIDE:P49967 EnsemblPlants:AT1G48900.1 GeneID:841312
KEGG:ath:AT1G48900 GeneFarm:1889 TAIR:At1g48900 InParanoid:P49967
OMA:NVQHMSK PhylomeDB:P49967 Genevestigator:P49967
GermOnline:AT1G48900 Uniprot:P49967
Length = 495
Score = 1508 (535.9 bits), Expect = 1.2e-154, P = 1.2e-154
Identities = 292/344 (84%), Positives = 317/344 (92%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVLA+LGG I+RAIQQMSN TIIDEK LNECLNEITRALLQ+DV F LV+EMQ+NIKKIV
Sbjct: 1 MVLAELGGRITRAIQQMSNVTIIDEKALNECLNEITRALLQSDVSFPLVKEMQSNIKKIV 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
NL+DLAAGHNKRRII+QAIF+ELCKMLDPGKP+F PKK K SV+MFVGLQG+GKTTTCTK
Sbjct: 61 NLEDLAAGHNKRRIIEQAIFSELCKMLDPGKPAFAPKKAKASVVMFVGLQGAGKTTTCTK 120
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
YAYYHQKKG+KPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPV+IAVEGV+TFK
Sbjct: 121 YAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDTFK 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXSV 240
KENCDLIIVDTSGRHKQEA+LFEEMRQV+EAT PDLVIFVMDSSIG SV
Sbjct: 181 KENCDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSV 240
Query: 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300
+VGAVI+TKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW
Sbjct: 241 AVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300
Query: 301 SGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMFSLCFQDSVLN 344
SGF+DK+ EVVP DQQPELL+KLS+GNFTLRIM+ FQ+ +LN
Sbjct: 301 SGFVDKLQEVVPKDQQPELLEKLSQGNFTLRIMYDQ-FQN-ILN 342
>TAIR|locus:2037803 [details] [associations]
symbol:ATHSRP54A "signal recognition particle 54 kDa
subunit" species:3702 "Arabidopsis thaliana" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0005525 "GTP binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=ISM;ISS] [GO:0005786 "signal
recognition particle, endoplasmic reticulum targeting"
evidence=ISS] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=IEA] [GO:0006617 "SRP-dependent
cotranslational protein targeting to membrane, signal sequence
recognition" evidence=ISS] [GO:0008312 "7S RNA binding"
evidence=IEA;ISS] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0048500 "signal recognition particle"
evidence=IEA] [GO:0010267 "production of ta-siRNAs involved in RNA
interference" evidence=RCA] [GO:0035196 "production of miRNAs
involved in gene silencing by miRNA" evidence=RCA] [GO:0051607
"defense response to virus" evidence=RCA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR006325
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0003924 GO:GO:0006184 EMBL:AC007591 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786 EMBL:L19997
EMBL:AF344329 EMBL:AY086187 IPI:IPI00526094 PIR:S42550
RefSeq:NP_563970.1 UniGene:At.24597 ProteinModelPortal:P37106
SMR:P37106 DIP:DIP-59002N STRING:P37106 PaxDb:P37106 PRIDE:P37106
EnsemblPlants:AT1G15310.1 GeneID:838100 KEGG:ath:AT1G15310
TAIR:At1g15310 eggNOG:COG0541 HOGENOM:HOG000036165
InParanoid:P37106 KO:K03106 OMA:KVIPPQM PhylomeDB:P37106
ProtClustDB:CLSN2686827 Genevestigator:P37106 GermOnline:AT1G15310
Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425
Uniprot:P37106
Length = 479
Score = 1422 (505.6 bits), Expect = 1.5e-145, P = 1.5e-145
Identities = 278/342 (81%), Positives = 303/342 (88%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVLA+LGG I+RAIQQM+N TIIDEKVLN+ LNEITRALLQ+DV F LV +MQTNIKKIV
Sbjct: 1 MVLAELGGRITRAIQQMNNVTIIDEKVLNDFLNEITRALLQSDVSFGLVEKMQTNIKKIV 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
NLDDLAAGHNKR II+QAIF ELC+MLDPGKP+F PKK KPSV+MFVGLQG+GKTTTCTK
Sbjct: 61 NLDDLAAGHNKRLIIEQAIFKELCRMLDPGKPAFAPKKAKPSVVMFVGLQGAGKTTTCTK 120
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
YAYYHQKKG+K ALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPV+IAVEGV+ FK
Sbjct: 121 YAYYHQKKGYKAALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDRFK 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXSV 240
KE CDLIIVDTSGRHKQ A+LFEEMRQV+EAT PDLVIFVMDSSIG +V
Sbjct: 181 KEKCDLIIVDTSGRHKQAASLFEEMRQVAEATEPDLVIFVMDSSIGQAAFEQAEAFKETV 240
Query: 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300
SVGAVI+TKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLG GDW
Sbjct: 241 SVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGKGDW 300
Query: 301 SGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMFSLCFQDSV 342
SG +DK+ EVVP D Q EL++ LS+GNFTLR M+ FQ S+
Sbjct: 301 SGLVDKLQEVVPKDLQNELVENLSQGNFTLRSMYDQ-FQCSL 341
>TAIR|locus:2157809 [details] [associations]
symbol:AT5G49500 "AT5G49500" species:3702 "Arabidopsis
thaliana" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005525 "GTP
binding" evidence=IEA;ISS] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0005786 "signal recognition particle, endoplasmic reticulum
targeting" evidence=ISS] [GO:0006614 "SRP-dependent cotranslational
protein targeting to membrane" evidence=IEA] [GO:0006617
"SRP-dependent cotranslational protein targeting to membrane,
signal sequence recognition" evidence=ISS] [GO:0008312 "7S RNA
binding" evidence=IEA;ISS] [GO:0048500 "signal recognition
particle" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010267 "production of ta-siRNAs involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0051607 "defense response to
virus" evidence=RCA] InterPro:IPR000897 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00962 SMART:SM00963 GO:GO:0005525 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003924 GO:GO:0006184 EMBL:AB023033
GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786
eggNOG:COG0541 HOGENOM:HOG000036165 KO:K03106
ProtClustDB:CLSN2686827 Gene3D:1.10.260.30 SUPFAM:SSF47446
TIGRFAMs:TIGR01425 EMBL:U12126 IPI:IPI00534798 RefSeq:NP_199761.1
UniGene:At.29781 ProteinModelPortal:P49966 SMR:P49966 IntAct:P49966
STRING:P49966 PRIDE:P49966 GeneID:835010 KEGG:ath:AT5G49500
TAIR:At5g49500 InParanoid:P49966 Genevestigator:P49966
GermOnline:AT5G49500 Uniprot:P49966
Length = 497
Score = 1317 (468.7 bits), Expect = 2.0e-134, P = 2.0e-134
Identities = 262/346 (75%), Positives = 293/346 (84%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVLA+LGG I AIQ+M+N TIIDEK LN+CLNEITRALLQ+DV F LV+EMQTNIKKIV
Sbjct: 1 MVLAELGGRIMSAIQKMNNVTIIDEKALNDCLNEITRALLQSDVSFPLVKEMQTNIKKIV 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGS--GKTTTC 118
NL+DLAAGHNKRRII+QAIF+ELCKMLDPGK +F PKK KPSV+MFVGLQG K
Sbjct: 61 NLEDLAAGHNKRRIIEQAIFSELCKMLDPGKSAFAPKKAKPSVVMFVGLQGEVLEKPQLV 120
Query: 119 TKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178
++KG+KPALVCADTFRAGAFDQLKQNATK+KIP+YGSYT SDPV+IAVEGV+
Sbjct: 121 PSMLIIIRRKGYKPALVCADTFRAGAFDQLKQNATKSKIPYYGSYTGSDPVKIAVEGVDR 180
Query: 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXX 238
FKKENCDLIIVDTSGRHKQ+A+LFEEMRQ+SEAT PDLVIFVMDSSIG
Sbjct: 181 FKKENCDLIIVDTSGRHKQQASLFEEMRQISEATKPDLVIFVMDSSIGQTAFEQARAFKQ 240
Query: 239 SVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMG 298
+V+VGAVI+TKMDGHAKGGG LSAVAATKSPVIFIGTGEHMDEFEVFD KPFVSRLLG G
Sbjct: 241 TVAVGAVIITKMDGHAKGGGTLSAVAATKSPVIFIGTGEHMDEFEVFDAKPFVSRLLGNG 300
Query: 299 DWSGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMFSLCFQDSVLN 344
D SGF++K+ EVVP DQQPELL+ LS G FTLRIM+ FQ+ +LN
Sbjct: 301 DMSGFVNKLQEVVPKDQQPELLEMLSHGKFTLRIMYDQ-FQN-MLN 344
>ZFIN|ZDB-GENE-040426-818 [details] [associations]
symbol:srp54 "signal recognition particle 54"
species:7955 "Danio rerio" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0048500 "signal recognition particle"
evidence=IEA] [GO:0003924 "GTPase activity" evidence=IEA]
[GO:0005525 "GTP binding" evidence=IEA] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008312 "7S RNA
binding" evidence=IEA] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR006325
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 ZFIN:ZDB-GENE-040426-818 GO:GO:0005525 GO:GO:0003924
GO:GO:0006184 GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364
eggNOG:COG0541 HOGENOM:HOG000036165 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 CTD:6729
GeneTree:ENSGT00550000074824 HOVERGEN:HBG061072 OMA:GQQVVKI
OrthoDB:EOG45MN54 GO:GO:0048500 HSSP:P70722 EMBL:BX088587
EMBL:BC045474 EMBL:BC067588 IPI:IPI00483938 RefSeq:NP_957282.1
UniGene:Dr.7990 SMR:Q7ZVN5 STRING:Q7ZVN5 Ensembl:ENSDART00000018678
Ensembl:ENSDART00000133424 GeneID:393963 KEGG:dre:393963
InParanoid:Q7ZVN5 NextBio:20814934 Uniprot:Q7ZVN5
Length = 504
Score = 1112 (396.5 bits), Expect = 1.1e-112, P = 1.1e-112
Identities = 214/340 (62%), Positives = 267/340 (78%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVLA LG I+ A++ +SNATII+E+VLN L E+ ALL+ADV KLV++++ N+K +
Sbjct: 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCAALLEADVNIKLVKQLRENVKAAI 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
+L+++A+G NKRR+IQ A+F EL K++DPG ++TP KGK +VIMFVGLQGSGKTTTC+K
Sbjct: 61 DLEEMASGLNKRRMIQHAVFKELVKLVDPGVKAWTPTKGKNNVIMFVGLQGSGKTTTCSK 120
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
AYY Q+KGWK L+CADTFRAGAFDQLKQNATKA+IPFYGSYTE DPV IA EGVE FK
Sbjct: 121 LAYYFQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIAAEGVEKFK 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXSV 240
EN ++IIVDTSGRHKQE +LFEEM QVS A PD +++VMD+SIG V
Sbjct: 181 SENFEIIIVDTSGRHKQEDSLFEEMLQVSNAVQPDNIVYVMDASIGQACEAQAKAFKDKV 240
Query: 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300
V +VIVTK+DGHAKGGGALSAVAATKSP+IFIGTGEH+D+FE F +PF+S+LLGMGD
Sbjct: 241 DVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDI 300
Query: 301 SGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMFSLCFQD 340
G +DK++E+ +D EL+ KL G FTLR M+ FQ+
Sbjct: 301 EGLIDKVNEL-KLDDNEELIDKLKHGQFTLRDMYEQ-FQN 338
>UNIPROTKB|Q2T9U1 [details] [associations]
symbol:SRP54 "Signal recognition particle 54 kDa protein"
species:9913 "Bos taurus" [GO:0042493 "response to drug"
evidence=ISS] [GO:0045047 "protein targeting to ER" evidence=ISS]
[GO:0003924 "GTPase activity" evidence=ISS] [GO:0005525 "GTP
binding" evidence=ISS] [GO:0008144 "drug binding" evidence=ISS]
[GO:0008312 "7S RNA binding" evidence=ISS] [GO:0019003 "GDP
binding" evidence=ISS] [GO:0030942 "endoplasmic reticulum signal
peptide binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005786 "signal recognition particle, endoplasmic reticulum
targeting" evidence=ISS] [GO:0043021 "ribonucleoprotein complex
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006614 "SRP-dependent cotranslational protein targeting to
membrane" evidence=IEA] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005634 GO:GO:0042493 GO:GO:0008144
GO:GO:0003924 GO:GO:0043021 GO:GO:0019003 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0045047 GO:GO:0005786
eggNOG:COG0541 HOGENOM:HOG000036165 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 GO:GO:0030942 EMBL:BC111270
IPI:IPI00698247 RefSeq:NP_001033290.1 UniGene:Bt.36654 HSSP:Q6MTB9
ProteinModelPortal:Q2T9U1 SMR:Q2T9U1 STRING:Q2T9U1 PRIDE:Q2T9U1
Ensembl:ENSBTAT00000025405 GeneID:614017 KEGG:bta:614017 CTD:6729
GeneTree:ENSGT00550000074824 HOVERGEN:HBG061072 InParanoid:Q2T9U1
OMA:GQQVVKI OrthoDB:EOG45MN54 NextBio:20898897 Uniprot:Q2T9U1
Length = 504
Score = 1104 (393.7 bits), Expect = 7.6e-112, P = 7.6e-112
Identities = 211/340 (62%), Positives = 268/340 (78%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVLA LG I+ A++ +SNATII+E+VLN L E+ ALL+ADV KLV++++ N+K +
Sbjct: 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
+L+++A+G NKR++IQ A+F EL K++DPG ++TP KGK +VIMFVGLQGSGKTTTC+K
Sbjct: 61 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK 120
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
AYY+Q+KGWK L+CADTFRAGAFDQLKQNATKA+IPFYGSYTE DPV IA EGVE FK
Sbjct: 121 LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXSV 240
EN ++IIVDTSGRHKQE +LFEEM QV+ A PD +++VMD+SIG V
Sbjct: 181 NENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKV 240
Query: 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300
V +VIVTK+DGHAKGGGALSAVAATKSP+IFIGTGEH+D+FE F +PF+S+LLGMGD
Sbjct: 241 DVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDI 300
Query: 301 SGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMFSLCFQD 340
G +DK++E+ +D L++KL G FTLR M+ FQ+
Sbjct: 301 EGLIDKVNEL-KLDDNEALIEKLKHGQFTLRDMYEQ-FQN 338
>UNIPROTKB|P61010 [details] [associations]
symbol:SRP54 "Signal recognition particle 54 kDa protein"
species:9615 "Canis lupus familiaris" [GO:0005829 "cytosol"
evidence=TAS] [GO:0030942 "endoplasmic reticulum signal peptide
binding" evidence=ISS;IMP] [GO:0042493 "response to drug"
evidence=ISS] [GO:0045047 "protein targeting to ER"
evidence=ISS;IMP] [GO:0003924 "GTPase activity" evidence=ISS]
[GO:0005525 "GTP binding" evidence=ISS] [GO:0008144 "drug binding"
evidence=ISS] [GO:0008312 "7S RNA binding" evidence=ISS]
[GO:0019003 "GDP binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005786 "signal recognition particle, endoplasmic
reticulum targeting" evidence=ISS] [GO:0006616 "SRP-dependent
cotranslational protein targeting to membrane, translocation"
evidence=IDA] [GO:0006617 "SRP-dependent cotranslational protein
targeting to membrane, signal sequence recognition" evidence=IMP]
[GO:0043021 "ribonucleoprotein complex binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] Reactome:REACT_86357
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0005829 GO:GO:0005634 GO:GO:0042493 GO:GO:0008144
GO:GO:0003924 GO:GO:0043021 GO:GO:0019003 GO:GO:0008312
SUPFAM:SSF47364 GO:GO:0006616 GO:GO:0005786 GO:GO:0006617
eggNOG:COG0541 HOGENOM:HOG000036165 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 Reactome:REACT_146484
GO:GO:0030942 PDB:2J37 PDBsum:2J37 CTD:6729
GeneTree:ENSGT00550000074824 HOVERGEN:HBG061072 OMA:GQQVVKI
OrthoDB:EOG45MN54 EMBL:X16318 PIR:S05197 RefSeq:NP_001003272.1
UniGene:Cfa.3810 PDB:2GO5 PDBsum:2GO5 ProteinModelPortal:P61010
SMR:P61010 STRING:P61010 PRIDE:P61010 Ensembl:ENSCAFT00000021158
GeneID:403953 KEGG:cfa:403953 InParanoid:P61010
EvolutionaryTrace:P61010 NextBio:20817443 Uniprot:P61010
Length = 504
Score = 1104 (393.7 bits), Expect = 7.6e-112, P = 7.6e-112
Identities = 211/340 (62%), Positives = 268/340 (78%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVLA LG I+ A++ +SNATII+E+VLN L E+ ALL+ADV KLV++++ N+K +
Sbjct: 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
+L+++A+G NKR++IQ A+F EL K++DPG ++TP KGK +VIMFVGLQGSGKTTTC+K
Sbjct: 61 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK 120
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
AYY+Q+KGWK L+CADTFRAGAFDQLKQNATKA+IPFYGSYTE DPV IA EGVE FK
Sbjct: 121 LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXSV 240
EN ++IIVDTSGRHKQE +LFEEM QV+ A PD +++VMD+SIG V
Sbjct: 181 NENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKV 240
Query: 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300
V +VIVTK+DGHAKGGGALSAVAATKSP+IFIGTGEH+D+FE F +PF+S+LLGMGD
Sbjct: 241 DVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDI 300
Query: 301 SGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMFSLCFQD 340
G +DK++E+ +D L++KL G FTLR M+ FQ+
Sbjct: 301 EGLIDKVNEL-KLDDNEALIEKLKHGQFTLRDMYEQ-FQN 338
>UNIPROTKB|P61011 [details] [associations]
symbol:SRP54 "Signal recognition particle 54 kDa protein"
species:9606 "Homo sapiens" [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0008144 "drug
binding" evidence=IDA] [GO:0006617 "SRP-dependent cotranslational
protein targeting to membrane, signal sequence recognition"
evidence=ISS] [GO:0030942 "endoplasmic reticulum signal peptide
binding" evidence=IDA] [GO:0008312 "7S RNA binding" evidence=IDA]
[GO:0006616 "SRP-dependent cotranslational protein targeting to
membrane, translocation" evidence=ISS] [GO:0005525 "GTP binding"
evidence=IDA] [GO:0019003 "GDP binding" evidence=IDA] [GO:0003924
"GTPase activity" evidence=IDA] [GO:0005786 "signal recognition
particle, endoplasmic reticulum targeting" evidence=IDA]
[GO:0042493 "response to drug" evidence=IDA] [GO:0045047 "protein
targeting to ER" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IC;TAS] [GO:0043021 "ribonucleoprotein complex binding"
evidence=IDA] [GO:0005829 "cytosol" evidence=TAS] [GO:0006412
"translation" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0044267 "cellular protein metabolic process"
evidence=TAS] [GO:0006184 "GTP catabolic process" evidence=IDA]
Reactome:REACT_71 Reactome:REACT_17015 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR006325
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0005829 GO:GO:0005730
GO:GO:0042493 GO:GO:0006412 GO:GO:0016607 GO:GO:0008144
GO:GO:0003924 GO:GO:0006184 GO:GO:0043021 GO:GO:0019003
TCDB:3.A.5.9.1 GO:GO:0008312 SUPFAM:SSF47364 GO:GO:0006616
GO:GO:0005786 GO:GO:0006617 eggNOG:COG0541 HOGENOM:HOG000036165
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425
GO:GO:0030942 PDB:1MFQ PDBsum:1MFQ CTD:6729 HOVERGEN:HBG061072
OMA:GQQVVKI OrthoDB:EOG45MN54 EMBL:X86373 EMBL:U51920 EMBL:AK300824
EMBL:AK312853 EMBL:AL049776 EMBL:BC000652 EMBL:BC003389
IPI:IPI00009822 IPI:IPI00929464 PIR:S54143 RefSeq:NP_001139754.1
RefSeq:NP_003127.1 UniGene:Hs.167535 PDB:1QB2 PDBsum:1QB2
ProteinModelPortal:P61011 SMR:P61011 IntAct:P61011 STRING:P61011
PhosphoSite:P61011 DMDM:46577650 PaxDb:P61011 PRIDE:P61011
DNASU:6729 Ensembl:ENST00000216774 Ensembl:ENST00000546080
Ensembl:ENST00000556994 GeneID:6729 KEGG:hsa:6729 UCSC:uc001wso.3
GeneCards:GC14P035452 HGNC:HGNC:11301 HPA:HPA048977 MIM:604857
neXtProt:NX_P61011 PharmGKB:PA36125 InParanoid:P61011
PhylomeDB:P61011 ChiTaRS:SRP54 EvolutionaryTrace:P61011
GenomeRNAi:6729 NextBio:26248 ArrayExpress:P61011 Bgee:P61011
CleanEx:HS_SRP54 Genevestigator:P61011 GermOnline:ENSG00000100883
Uniprot:P61011
Length = 504
Score = 1104 (393.7 bits), Expect = 7.6e-112, P = 7.6e-112
Identities = 211/340 (62%), Positives = 268/340 (78%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVLA LG I+ A++ +SNATII+E+VLN L E+ ALL+ADV KLV++++ N+K +
Sbjct: 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
+L+++A+G NKR++IQ A+F EL K++DPG ++TP KGK +VIMFVGLQGSGKTTTC+K
Sbjct: 61 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK 120
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
AYY+Q+KGWK L+CADTFRAGAFDQLKQNATKA+IPFYGSYTE DPV IA EGVE FK
Sbjct: 121 LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXSV 240
EN ++IIVDTSGRHKQE +LFEEM QV+ A PD +++VMD+SIG V
Sbjct: 181 NENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKV 240
Query: 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300
V +VIVTK+DGHAKGGGALSAVAATKSP+IFIGTGEH+D+FE F +PF+S+LLGMGD
Sbjct: 241 DVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDI 300
Query: 301 SGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMFSLCFQD 340
G +DK++E+ +D L++KL G FTLR M+ FQ+
Sbjct: 301 EGLIDKVNEL-KLDDNEALIEKLKHGQFTLRDMYEQ-FQN 338
>UNIPROTKB|F2Z5M9 [details] [associations]
symbol:SRP54 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043021 "ribonucleoprotein complex binding"
evidence=IEA] [GO:0042493 "response to drug" evidence=IEA]
[GO:0030942 "endoplasmic reticulum signal peptide binding"
evidence=IEA] [GO:0019003 "GDP binding" evidence=IEA] [GO:0008144
"drug binding" evidence=IEA] [GO:0005786 "signal recognition
particle, endoplasmic reticulum targeting" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0008312 "7S RNA binding"
evidence=IEA] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=IEA] [GO:0005525 "GTP binding"
evidence=IEA] [GO:0003924 "GTPase activity" evidence=IEA]
HAMAP:MF_00306 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005634 GO:GO:0042493 GO:GO:0008144
GO:GO:0003924 GO:GO:0043021 GO:GO:0019003 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786 KO:K03106
Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425 GO:GO:0030942
CTD:6729 GeneTree:ENSGT00550000074824 OMA:GQQVVKI EMBL:CU469145
RefSeq:XP_001927834.3 ProteinModelPortal:F2Z5M9 SMR:F2Z5M9
PRIDE:F2Z5M9 Ensembl:ENSSSCT00000002187 GeneID:100154361
KEGG:ssc:100154361 Uniprot:F2Z5M9
Length = 504
Score = 1104 (393.7 bits), Expect = 7.6e-112, P = 7.6e-112
Identities = 211/340 (62%), Positives = 268/340 (78%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVLA LG I+ A++ +SNATII+E+VLN L E+ ALL+ADV KLV++++ N+K +
Sbjct: 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
+L+++A+G NKR++IQ A+F EL K++DPG ++TP KGK +VIMFVGLQGSGKTTTC+K
Sbjct: 61 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK 120
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
AYY+Q+KGWK L+CADTFRAGAFDQLKQNATKA+IPFYGSYTE DPV IA EGVE FK
Sbjct: 121 LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXSV 240
EN ++IIVDTSGRHKQE +LFEEM QV+ A PD +++VMD+SIG V
Sbjct: 181 NENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKV 240
Query: 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300
V +VIVTK+DGHAKGGGALSAVAATKSP+IFIGTGEH+D+FE F +PF+S+LLGMGD
Sbjct: 241 DVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDI 300
Query: 301 SGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMFSLCFQD 340
G +DK++E+ +D L++KL G FTLR M+ FQ+
Sbjct: 301 EGLIDKVNEL-KLDDNEALIEKLKHGQFTLRDMYEQ-FQN 338
>UNIPROTKB|Q4R965 [details] [associations]
symbol:SRP54 "Signal recognition particle 54 kDa protein"
species:9541 "Macaca fascicularis" [GO:0005525 "GTP binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005786
"signal recognition particle, endoplasmic reticulum targeting"
evidence=ISS] [GO:0006184 "GTP catabolic process" evidence=ISS]
[GO:0008144 "drug binding" evidence=ISS] [GO:0008312 "7S RNA
binding" evidence=ISS] [GO:0019003 "GDP binding" evidence=ISS]
[GO:0030942 "endoplasmic reticulum signal peptide binding"
evidence=ISS] [GO:0042493 "response to drug" evidence=ISS]
[GO:0045047 "protein targeting to ER" evidence=ISS] [GO:0003924
"GTPase activity" evidence=ISS] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR006325
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0005634 GO:GO:0042493
GO:GO:0016607 GO:GO:0008144 GO:GO:0003924 GO:GO:0006184
GO:GO:0019003 GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364
GO:GO:0045047 GO:GO:0005786 Gene3D:1.10.260.30 SUPFAM:SSF47446
TIGRFAMs:TIGR01425 GO:GO:0030942 HOVERGEN:HBG061072 EMBL:AB168231
ProteinModelPortal:Q4R965 SMR:Q4R965 PRIDE:Q4R965 Uniprot:Q4R965
Length = 504
Score = 1104 (393.7 bits), Expect = 7.6e-112, P = 7.6e-112
Identities = 211/340 (62%), Positives = 268/340 (78%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVLA LG I+ A++ +SNATII+E+VLN L E+ ALL+ADV KLV++++ N+K +
Sbjct: 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
+L+++A+G NKR++IQ A+F EL K++DPG ++TP KGK +VIMFVGLQGSGKTTTC+K
Sbjct: 61 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK 120
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
AYY+Q+KGWK L+CADTFRAGAFDQLKQNATKA+IPFYGSYTE DPV IA EGVE FK
Sbjct: 121 LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXSV 240
EN ++IIVDTSGRHKQE +LFEEM QV+ A PD +++VMD+SIG V
Sbjct: 181 NENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKV 240
Query: 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300
V +VIVTK+DGHAKGGGALSAVAATKSP+IFIGTGEH+D+FE F +PF+S+LLGMGD
Sbjct: 241 DVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDI 300
Query: 301 SGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMFSLCFQD 340
G +DK++E+ +D L++KL G FTLR M+ FQ+
Sbjct: 301 EGLIDKVNEL-KLDDNEALIEKLKHGQFTLRDMYEQ-FQN 338
>UNIPROTKB|Q5R4R6 [details] [associations]
symbol:SRP54 "Signal recognition particle 54 kDa protein"
species:9601 "Pongo abelii" [GO:0005525 "GTP binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005786 "signal recognition
particle, endoplasmic reticulum targeting" evidence=ISS]
[GO:0006184 "GTP catabolic process" evidence=ISS] [GO:0008144 "drug
binding" evidence=ISS] [GO:0008312 "7S RNA binding" evidence=ISS]
[GO:0019003 "GDP binding" evidence=ISS] [GO:0030942 "endoplasmic
reticulum signal peptide binding" evidence=ISS] [GO:0042493
"response to drug" evidence=ISS] [GO:0045047 "protein targeting to
ER" evidence=ISS] [GO:0003924 "GTPase activity" evidence=ISS]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0005634 GO:GO:0042493 GO:GO:0016607 GO:GO:0008144
GO:GO:0003924 GO:GO:0006184 GO:GO:0019003 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0045047 GO:GO:0005786 KO:K03106
Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425 GO:GO:0030942
CTD:6729 HOVERGEN:HBG061072 EMBL:CR861178 RefSeq:NP_001126912.1
UniGene:Pab.3814 ProteinModelPortal:Q5R4R6 SMR:Q5R4R6 PRIDE:Q5R4R6
GeneID:100173929 KEGG:pon:100173929 InParanoid:Q5R4R6
Uniprot:Q5R4R6
Length = 504
Score = 1104 (393.7 bits), Expect = 7.6e-112, P = 7.6e-112
Identities = 211/340 (62%), Positives = 268/340 (78%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVLA LG I+ A++ +SNATII+E+VLN L E+ ALL+ADV KLV++++ N+K +
Sbjct: 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
+L+++A+G NKR++IQ A+F EL K++DPG ++TP KGK +VIMFVGLQGSGKTTTC+K
Sbjct: 61 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK 120
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
AYY+Q+KGWK L+CADTFRAGAFDQLKQNATKA+IPFYGSYTE DPV IA EGVE FK
Sbjct: 121 LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXSV 240
EN ++IIVDTSGRHKQE +LFEEM QV+ A PD +++VMD+SIG V
Sbjct: 181 NENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKV 240
Query: 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300
V +VIVTK+DGHAKGGGALSAVAATKSP+IFIGTGEH+D+FE F +PF+S+LLGMGD
Sbjct: 241 DVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDI 300
Query: 301 SGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMFSLCFQD 340
G +DK++E+ +D L++KL G FTLR M+ FQ+
Sbjct: 301 EGLIDKVNEL-KLDDNEALIEKLKHGQFTLRDMYEQ-FQN 338
>RGD|2323636 [details] [associations]
symbol:Fam177a1 "family with sequence similarity 177, member A1"
species:10116 "Rattus norvegicus" [GO:0003924 "GTPase activity"
evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IEA] [GO:0008312 "7S RNA binding" evidence=IEA]
[GO:0048500 "signal recognition particle" evidence=IEA]
HAMAP:MF_00306 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
RGD:2323636 GO:GO:0005525 GO:GO:0003924 GO:GO:0006184 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 GeneTree:ENSGT00550000074824
IPI:IPI00387699 PRIDE:F1M7P5 Ensembl:ENSRNOT00000052076
ArrayExpress:F1M7P5 Uniprot:F1M7P5
Length = 500
Score = 1103 (393.3 bits), Expect = 9.7e-112, P = 9.7e-112
Identities = 211/340 (62%), Positives = 268/340 (78%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVLA LG I+ A++ +SNATII+E+VLN L E+ ALL+ADV KLV++++ N+K +
Sbjct: 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
+L+++A+G NKR++IQ A+F EL K++DPG ++TP KGK +VIMFVGLQGSGKTTTC+K
Sbjct: 61 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK 120
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
AY++Q+KGWK L+CADTFRAGAFDQLKQNATKA+IPFYGSYTE DPV IA EGVE FK
Sbjct: 121 LAYFYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXSV 240
EN ++IIVDTSGRHKQE +LFEEM QVS A PD +++VMD+SIG V
Sbjct: 181 NENFEIIIVDTSGRHKQEDSLFEEMLQVSNAIQPDNIVYVMDASIGQACEAQAKAFKDKV 240
Query: 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300
V +VIVTK+DGHAKGGGALSAVAATKSP+IFIGTGEH+D+FE F +PF+S+LLGMGD
Sbjct: 241 DVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDI 300
Query: 301 SGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMFSLCFQD 340
G +DK++E+ +D L++KL G FTLR M+ FQ+
Sbjct: 301 EGLIDKVNEL-KLDDNEALIEKLKHGQFTLRDMYEQ-FQN 338
>RGD|621390 [details] [associations]
symbol:Srp54 "signal recognition particle 54A" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003924 "GTPase activity" evidence=IEA;ISO] [GO:0005525 "GTP
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005786 "signal recognition particle, endoplasmic
reticulum targeting" evidence=IEA;ISO] [GO:0006184 "GTP catabolic
process" evidence=ISO] [GO:0006614 "SRP-dependent cotranslational
protein targeting to membrane" evidence=IEA] [GO:0008144 "drug
binding" evidence=IEA;ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0008312 "7S RNA binding" evidence=IEA;ISO]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0019003 "GDP binding"
evidence=IEA;ISO] [GO:0030942 "endoplasmic reticulum signal peptide
binding" evidence=IEA;ISO] [GO:0042493 "response to drug"
evidence=IEA;ISO] [GO:0043021 "ribonucleoprotein complex binding"
evidence=IEA;ISO] [GO:0045047 "protein targeting to ER"
evidence=ISO] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
RGD:621390 GO:GO:0005525 GO:GO:0042493 GO:GO:0016607 GO:GO:0008144
GO:GO:0003924 GO:GO:0043021 GO:GO:0019003 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786 eggNOG:COG0541
HOGENOM:HOG000036165 KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446
TIGRFAMs:TIGR01425 GO:GO:0030942 CTD:6729 HOVERGEN:HBG061072
OMA:GQQVVKI EMBL:BC079117 IPI:IPI00391089 RefSeq:NP_446323.1
UniGene:Rn.24880 ProteinModelPortal:Q6AYB5 SMR:Q6AYB5 STRING:Q6AYB5
PRIDE:Q6AYB5 Ensembl:ENSRNOT00000049937 GeneID:116650
KEGG:rno:116650 UCSC:RGD:621390 InParanoid:Q6AYB5 NextBio:619403
ArrayExpress:Q6AYB5 Genevestigator:Q6AYB5
GermOnline:ENSRNOG00000032776 Uniprot:Q6AYB5
Length = 504
Score = 1103 (393.3 bits), Expect = 9.7e-112, P = 9.7e-112
Identities = 211/340 (62%), Positives = 268/340 (78%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVLA LG I+ A++ +SNATII+E+VLN L E+ ALL+ADV KLV++++ N+K +
Sbjct: 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
+L+++A+G NKR++IQ A+F EL K++DPG ++TP KGK +VIMFVGLQGSGKTTTC+K
Sbjct: 61 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK 120
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
AY++Q+KGWK L+CADTFRAGAFDQLKQNATKA+IPFYGSYTE DPV IA EGVE FK
Sbjct: 121 LAYFYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXSV 240
EN ++IIVDTSGRHKQE +LFEEM QVS A PD +++VMD+SIG V
Sbjct: 181 NENFEIIIVDTSGRHKQEDSLFEEMLQVSNAIQPDNIVYVMDASIGQACEAQAKAFKDKV 240
Query: 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300
V +VIVTK+DGHAKGGGALSAVAATKSP+IFIGTGEH+D+FE F +PF+S+LLGMGD
Sbjct: 241 DVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDI 300
Query: 301 SGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMFSLCFQD 340
G +DK++E+ +D L++KL G FTLR M+ FQ+
Sbjct: 301 EGLIDKVNEL-KLDDNEALIEKLKHGQFTLRDMYEQ-FQN 338
>UNIPROTKB|E1C6G6 [details] [associations]
symbol:SRP54 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003924 "GTPase activity" evidence=IEA] [GO:0005525
"GTP binding" evidence=IEA] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA]
[GO:0008312 "7S RNA binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005786 "signal recognition particle, endoplasmic
reticulum targeting" evidence=IEA] [GO:0008144 "drug binding"
evidence=IEA] [GO:0019003 "GDP binding" evidence=IEA] [GO:0030942
"endoplasmic reticulum signal peptide binding" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0043021
"ribonucleoprotein complex binding" evidence=IEA] HAMAP:MF_00306
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0005634 GO:GO:0042493 GO:GO:0008144 GO:GO:0003924
GO:GO:0043021 GO:GO:0019003 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 GO:GO:0030942 CTD:6729
GeneTree:ENSGT00550000074824 OMA:GQQVVKI EMBL:AADN02003392
IPI:IPI00581279 RefSeq:XP_421238.1 ProteinModelPortal:E1C6G6
PRIDE:E1C6G6 Ensembl:ENSGALT00000016327 GeneID:423322
KEGG:gga:423322 NextBio:20825811 Uniprot:E1C6G6
Length = 504
Score = 1096 (390.9 bits), Expect = 5.3e-111, P = 5.3e-111
Identities = 208/340 (61%), Positives = 268/340 (78%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVLA LG I+ A++ +SNATII+E+VLN L E+ ALL+ADV KLV++++ N+K +
Sbjct: 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
+L+++A+G NKR++IQ A+F EL K++DPG ++TP KGK ++IMFVGLQGSGKTTTC+K
Sbjct: 61 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNIIMFVGLQGSGKTTTCSK 120
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
AY++Q+KGWK L+CADT+RAGAFDQLKQNATKA+IPFYGSYTE DPV IA EGVE FK
Sbjct: 121 LAYFYQRKGWKTCLICADTYRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXSV 240
EN ++IIVDTSGRHKQE +LFEEM QV+ A PD +++VMD+SIG V
Sbjct: 181 NENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKV 240
Query: 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300
V +VIVTK+DGHAKGGGALSAVAATKSP+IFIGTGEH+D+FE F +PF+S+LLGMGD
Sbjct: 241 DVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDI 300
Query: 301 SGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMFSLCFQD 340
G +DK++E+ +D L++KL G FTLR M+ FQ+
Sbjct: 301 EGLIDKVNEL-KLDDNEALIEKLKHGQFTLRDMYEQ-FQN 338
>FB|FBgn0010747 [details] [associations]
symbol:Srp54k "Signal recognition particle protein 54k"
species:7227 "Drosophila melanogaster" [GO:0005786 "signal
recognition particle, endoplasmic reticulum targeting"
evidence=ISS] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=ISS] [GO:0008312 "7S RNA binding"
evidence=ISS] [GO:0006617 "SRP-dependent cotranslational protein
targeting to membrane, signal sequence recognition" evidence=ISS]
[GO:0005048 "signal sequence binding" evidence=ISS] [GO:0005525
"GTP binding" evidence=IEA] [GO:0003924 "GTPase activity"
evidence=IEA] HAMAP:MF_00306 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0003924 GO:GO:0006184 GO:GO:0005048
GO:GO:0008312 SUPFAM:SSF47364 GO:GO:0005786 GO:GO:0006617
eggNOG:COG0541 Gene3D:1.10.260.30 SUPFAM:SSF47446
TIGRFAMs:TIGR01425 HSSP:P70722 EMBL:AY094660
ProteinModelPortal:Q8T3P8 SMR:Q8T3P8 STRING:Q8T3P8 PaxDb:Q8T3P8
PRIDE:Q8T3P8 FlyBase:FBgn0010747 InParanoid:Q8T3P8
OrthoDB:EOG44TMQ3 ChiTaRS:Srp54k ArrayExpress:Q8T3P8 Bgee:Q8T3P8
Uniprot:Q8T3P8
Length = 569
Score = 1064 (379.6 bits), Expect = 1.3e-107, P = 1.3e-107
Identities = 201/340 (59%), Positives = 263/340 (77%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVLA LG I+ A+ +S AT+I+E+ LN L EI ALL+ADV +LV++++ N++ ++
Sbjct: 1 MVLADLGRKITTALHSLSKATVINEEALNSMLKEICAALLEADVNIRLVKQLRENVRAVI 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
+ D++A G NKRR+IQ A+F EL K++DPG + P KGK +V+MFVGLQGSGKTTTCTK
Sbjct: 61 DFDEMAGGLNKRRMIQSAVFKELVKLVDPGVKPYQPIKGKANVVMFVGLQGSGKTTTCTK 120
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
AY++QK+ WK LVCADTFRAGA+DQ+KQNATKA+IPFYGSYTE DPV IA +GV+ FK
Sbjct: 121 LAYHYQKRNWKSCLVCADTFRAGAYDQVKQNATKARIPFYGSYTEIDPVVIAQDGVDMFK 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXSV 240
+E ++IIVDTSGRHKQE +LFEEM VS A +PD +IFVMD++IG V
Sbjct: 181 REGFEMIIVDTSGRHKQEESLFEEMLAVSNAVSPDNIIFVMDATIGQACEAQAKAFKDKV 240
Query: 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300
+G+VI+TK+DGHAKGGGALSAVAAT+SP+IFIGTGEH+D+ E F KPFVS+LLGMGD
Sbjct: 241 DIGSVIITKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLLGMGDI 300
Query: 301 SGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMFSLCFQD 340
G +DK++E+ +D ELL+K+ G+FT+R M+ FQ+
Sbjct: 301 EGLIDKVNEL-KLDGNDELLEKIKHGHFTIRDMYEQ-FQN 338
>WB|WBGene00009012 [details] [associations]
symbol:F21D5.7 species:6239 "Caenorhabditis elegans"
[GO:0005525 "GTP binding" evidence=IEA] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0008312 "7S
RNA binding" evidence=IEA] [GO:0048500 "signal recognition
particle" evidence=IEA] [GO:0003924 "GTPase activity" evidence=IEA]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] HAMAP:MF_00306 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0006915 GO:GO:0002119 GO:GO:0003924
GO:GO:0006184 GO:GO:0000003 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 EMBL:Z68161 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 GeneTree:ENSGT00550000074824
OMA:GQQVVKI GO:GO:0048500 EMBL:Z54271 PIR:A88763 PIR:T21140
RefSeq:NP_501507.1 HSSP:P70722 ProteinModelPortal:G5EE80 SMR:G5EE80
EnsemblMetazoa:F21D5.7.1 EnsemblMetazoa:F21D5.7.2 GeneID:259584
KEGG:cel:CELE_F21D5.7 CTD:259584 WormBase:F21D5.7 NextBio:952170
Uniprot:G5EE80
Length = 496
Score = 1052 (375.4 bits), Expect = 2.5e-106, P = 2.5e-106
Identities = 201/340 (59%), Positives = 259/340 (76%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVLA LG I AI ++ +T+I+E L+ L E+ AL+++DV +LV++++ N+KK +
Sbjct: 1 MVLADLGRKIRNAIGKLGQSTVINEGELDLMLKEVCTALIESDVHIRLVKQLKDNVKKAI 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
N +++ G NKRR IQ+ +FNEL K++DPG FTP KG+ +V MFVGLQGSGKTTTCTK
Sbjct: 61 NFEEIVGGANKRRYIQKTVFNELLKLVDPGVTPFTPTKGRRNVFMFVGLQGSGKTTTCTK 120
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
AYY+Q+KGWK L+CADTFRAGAFDQLKQNATKA+IPFYGSY+E DPV+IA EGVE F
Sbjct: 121 MAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYSEIDPVKIAAEGVEKFT 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXSV 240
+E ++IIVDTSGRHKQEA+LFEEM QVS A PD V+FVMD+SIG +V
Sbjct: 181 QEGFEIIIVDTSGRHKQEASLFEEMLQVSNAVTPDNVVFVMDASIGQACEAQARAFSQTV 240
Query: 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300
V +VI+TK+D HAKGGGALSAVA TKSPVIFIGTGEH+D+FE+F K FV +LLGMGD
Sbjct: 241 DVASVIITKLDSHAKGGGALSAVAVTKSPVIFIGTGEHIDDFEIFKPKSFVQKLLGMGDI 300
Query: 301 SGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMFSLCFQD 340
+G +D ++++ D + EL+ +L +G FTLR M+ FQ+
Sbjct: 301 AGLVDMVNDIGIQDNK-ELVGRLKQGQFTLRDMYEQ-FQN 338
>GENEDB_PFALCIPARUM|PF14_0477 [details] [associations]
symbol:PF14_0477 "signal recognition particle
54 kDa protein, putative" species:5833 "Plasmodium falciparum"
[GO:0005048 "signal sequence binding" evidence=ISS] HAMAP:MF_00306
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0003924 GO:GO:0006184 EMBL:AE014187 GO:GO:0005048
GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364 HOGENOM:HOG000036165
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425
GO:GO:0048500 HSSP:P70722 RefSeq:XP_001348651.1
ProteinModelPortal:Q8IKX4 EnsemblProtists:PF14_0477:mRNA
GeneID:812059 KEGG:pfa:PF14_0477 EuPathDB:PlasmoDB:PF3D7_1450100
OMA:QMANALP ProtClustDB:CLSZ2514463 Uniprot:Q8IKX4
Length = 500
Score = 991 (353.9 bits), Expect = 7.1e-100, P = 7.1e-100
Identities = 190/340 (55%), Positives = 254/340 (74%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVL +LG I+ A +++ +T+ D+ V+ ECL EI RAL+ +D+ ++++++NIK +
Sbjct: 1 MVLTELGTQITNAFRKLQTSTLADDVVIEECLKEIIRALILSDINVSYLKDIKSNIKNNI 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
+ G+NK++++Q+ + EL K+L+ K + P KGK +VI+FVGLQGSGKTTTCTK
Sbjct: 61 EKNIDIYGNNKKKLVQKYVVEELIKLLEGKKEGYNPVKGKRNVILFVGLQGSGKTTTCTK 120
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
YA+Y+QKKG+K ALVCADTFRAGAFDQLKQNA K KIPFYGSY+E DPV+IA +GV F
Sbjct: 121 YAHYYQKKGFKTALVCADTFRAGAFDQLKQNAAKVKIPFYGSYSEVDPVKIATDGVNAFL 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXSV 240
K+ DLIIVD+SGRHKQE LFEEM QV + P+ +IFV+DS IG SV
Sbjct: 181 KDKYDLIIVDSSGRHKQENELFEEMIQVENSIQPEEIIFVIDSHIGQSCHDQAMAFKNSV 240
Query: 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300
S+G++I+TK+DGHAKGGGALSAVAAT P+ FIGTGEH+++FE F+ K FVSRLLG+GD
Sbjct: 241 SLGSIIITKIDGHAKGGGALSAVAATGCPITFIGTGEHVNDFEKFEAKSFVSRLLGLGDI 300
Query: 301 SGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMFSLCFQD 340
SG + I EV+ +D+QPEL+ +LS+G F LR M+ FQ+
Sbjct: 301 SGLVSTIKEVIDIDKQPELMNRLSKGKFVLRDMYDQ-FQN 339
>UNIPROTKB|Q8IKX4 [details] [associations]
symbol:PF14_0477 "Signal recognition particle SRP54,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0005048
"signal sequence binding" evidence=ISS] HAMAP:MF_00306
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0003924 GO:GO:0006184 EMBL:AE014187 GO:GO:0005048
GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364 HOGENOM:HOG000036165
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425
GO:GO:0048500 HSSP:P70722 RefSeq:XP_001348651.1
ProteinModelPortal:Q8IKX4 EnsemblProtists:PF14_0477:mRNA
GeneID:812059 KEGG:pfa:PF14_0477 EuPathDB:PlasmoDB:PF3D7_1450100
OMA:QMANALP ProtClustDB:CLSZ2514463 Uniprot:Q8IKX4
Length = 500
Score = 991 (353.9 bits), Expect = 7.1e-100, P = 7.1e-100
Identities = 190/340 (55%), Positives = 254/340 (74%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVL +LG I+ A +++ +T+ D+ V+ ECL EI RAL+ +D+ ++++++NIK +
Sbjct: 1 MVLTELGTQITNAFRKLQTSTLADDVVIEECLKEIIRALILSDINVSYLKDIKSNIKNNI 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
+ G+NK++++Q+ + EL K+L+ K + P KGK +VI+FVGLQGSGKTTTCTK
Sbjct: 61 EKNIDIYGNNKKKLVQKYVVEELIKLLEGKKEGYNPVKGKRNVILFVGLQGSGKTTTCTK 120
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
YA+Y+QKKG+K ALVCADTFRAGAFDQLKQNA K KIPFYGSY+E DPV+IA +GV F
Sbjct: 121 YAHYYQKKGFKTALVCADTFRAGAFDQLKQNAAKVKIPFYGSYSEVDPVKIATDGVNAFL 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXSV 240
K+ DLIIVD+SGRHKQE LFEEM QV + P+ +IFV+DS IG SV
Sbjct: 181 KDKYDLIIVDSSGRHKQENELFEEMIQVENSIQPEEIIFVIDSHIGQSCHDQAMAFKNSV 240
Query: 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300
S+G++I+TK+DGHAKGGGALSAVAAT P+ FIGTGEH+++FE F+ K FVSRLLG+GD
Sbjct: 241 SLGSIIITKIDGHAKGGGALSAVAATGCPITFIGTGEHVNDFEKFEAKSFVSRLLGLGDI 300
Query: 301 SGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMFSLCFQD 340
SG + I EV+ +D+QPEL+ +LS+G F LR M+ FQ+
Sbjct: 301 SGLVSTIKEVIDIDKQPELMNRLSKGKFVLRDMYDQ-FQN 339
>DICTYBASE|DDB_G0275455 [details] [associations]
symbol:srp54 "signal recognition particle 54 kDa
subunit" species:44689 "Dictyostelium discoideum" [GO:0045335
"phagocytic vesicle" evidence=IDA] [GO:0048500 "signal recognition
particle" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0008312 "7S RNA binding" evidence=IEA]
[GO:0006614 "SRP-dependent cotranslational protein targeting to
membrane" evidence=IEA] [GO:0006184 "GTP catabolic process"
evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA] [GO:0003924
"GTPase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005786 "signal recognition particle, endoplasmic reticulum
targeting" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR006325
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 dictyBase:DDB_G0275455 GO:GO:0005525 GO:GO:0045335
GO:GO:0003924 GO:GO:0006184 GenomeReviews:CM000151_GR
EMBL:AAFI02000013 GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364
GO:GO:0005786 eggNOG:COG0541 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 OMA:GQQVVKI RefSeq:XP_643640.1
HSSP:P61011 ProteinModelPortal:Q75K18 STRING:Q75K18
EnsemblProtists:DDB0232373 GeneID:8620227 KEGG:ddi:DDB_G0275455
Uniprot:Q75K18
Length = 542
Score = 963 (344.1 bits), Expect = 6.6e-97, P = 6.6e-97
Identities = 181/333 (54%), Positives = 247/333 (74%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVLA LG +S A++ ++ TI++E +N+ L E+ AL ++DV L+ +M+ NIK +
Sbjct: 1 MVLADLGNQLSSALRSLNETTIVNEDTINQLLKEVGNALSKSDVSMSLIIQMRKNIKDKI 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
LD +AAG NKR+II+Q +F+EL ++LDPG P + P KGK +++MFVGLQG+GKTT+ TK
Sbjct: 61 KLDQMAAGLNKRKIIKQVVFDELIRLLDPGVPLWKPTKGKSNIVMFVGLQGAGKTTSVTK 120
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
AY+++KKG+ A+VCADTFRAGAFDQ++ NA KAKI +YGS TE DPV +A GV+ FK
Sbjct: 121 LAYFYKKKGFSTAIVCADTFRAGAFDQVRHNAAKAKIHYYGSETEKDPVVVARTGVDIFK 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXSV 240
K+ ++IIVDTSGRHKQ++ LFEEM+Q+ A PD IFVMDSSIG SV
Sbjct: 181 KDGTEIIIVDTSGRHKQDSELFEEMKQIETAVKPDNCIFVMDSSIGQAAYEQATAFRSSV 240
Query: 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300
VG++I+TKMDG++ GGGA+SAVAAT +P+IFIGTGEH+ + E+FD FVS+LLG GD
Sbjct: 241 KVGSIIITKMDGNSMGGGAISAVAATNTPIIFIGTGEHLTDLELFDPSTFVSKLLGYGDM 300
Query: 301 SGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIM 333
G ++KI EV+P D L+++++G FTLR M
Sbjct: 301 KGMLEKIKEVIPEDSTS--LKEIAQGKFTLRSM 331
>UNIPROTKB|G3V4F7 [details] [associations]
symbol:SRP54 "Signal recognition particle 54 kDa protein"
species:9606 "Homo sapiens" [GO:0003924 "GTPase activity"
evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IEA] [GO:0008312 "7S RNA binding" evidence=IEA]
[GO:0048500 "signal recognition particle" evidence=IEA]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 Pfam:PF00448 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 GO:GO:0005525 GO:GO:0003924
GO:GO:0006184 GO:GO:0008312 GO:GO:0006614 Gene3D:1.10.260.30
SUPFAM:SSF47446 TIGRFAMs:TIGR01425 GO:GO:0048500 EMBL:AL049776
HGNC:HGNC:11301 ChiTaRS:SRP54 ProteinModelPortal:G3V4F7 SMR:G3V4F7
Ensembl:ENST00000555557 ArrayExpress:G3V4F7 Bgee:G3V4F7
Uniprot:G3V4F7
Length = 440
Score = 938 (335.3 bits), Expect = 3.0e-94, P = 3.0e-94
Identities = 179/276 (64%), Positives = 219/276 (79%)
Query: 65 LAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYY 124
+A+G NKR++IQ A+F EL K++DPG ++TP KGK +VIMFVGLQGSGKTTTC+K AYY
Sbjct: 1 MASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYY 60
Query: 125 HQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENC 184
+Q+KGWK L+CADTFRAGAFDQLKQNATKA+IPFYGSYTE DPV IA EGVE FK EN
Sbjct: 61 YQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENF 120
Query: 185 DLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXSVSVGA 244
++IIVDTSGRHKQE +LFEEM QV+ A PD +++VMD+SIG V V +
Sbjct: 121 EIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVAS 180
Query: 245 VIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFM 304
VIVTK+DGHAKGGGALSAVAATKSP+IFIGTGEH+D+FE F +PF+S+LLGMGD G +
Sbjct: 181 VIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLI 240
Query: 305 DKIHEVVPMDQQPELLQKLSEGNFTLRIMFSLCFQD 340
DK++E+ +D L++KL G FTLR M+ FQ+
Sbjct: 241 DKVNEL-KLDDNEALIEKLKHGQFTLRDMYEQ-FQN 274
>POMBASE|SPCC188.06c [details] [associations]
symbol:srp54 "signal recognition particle subunit Srp54"
species:4896 "Schizosaccharomyces pombe" [GO:0003924 "GTPase
activity" evidence=IMP] [GO:0005525 "GTP binding" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=IDA] [GO:0005786
"signal recognition particle, endoplasmic reticulum targeting"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IMP] [GO:0008312 "7S RNA binding" evidence=IMP]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 PomBase:SPCC188.06c
GO:GO:0005525 GO:GO:0005783 GO:GO:0005829 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003924 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 eggNOG:COG0541 HOGENOM:HOG000036165
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 TIGRFAMs:TIGR01425
OMA:GQQVVKI EMBL:X51613 EMBL:M55518 PIR:A33644 RefSeq:NP_588209.1
ProteinModelPortal:P21565 MINT:MINT-4687605 STRING:P21565
PRIDE:P21565 EnsemblFungi:SPCC188.06c.1 GeneID:2539290
KEGG:spo:SPCC188.06c OrthoDB:EOG4TMV9N NextBio:20800457
Uniprot:P21565
Length = 522
Score = 927 (331.4 bits), Expect = 4.3e-93, P = 4.3e-93
Identities = 175/331 (52%), Positives = 244/331 (73%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MV A LG ++ A+ S AT ++E++++ L I ALL+ DV +LV+E+++NIKK +
Sbjct: 1 MVFADLGRRLNSALGDFSKATSVNEELVDTLLKNICTALLETDVNVRLVQELRSNIKKKI 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
N+ L G N +RI+Q+A+F+ELC ++DP +FTPKKG+PSVIM VGLQGSGKTTTC+K
Sbjct: 61 NVSTLPQGINGKRIVQKAVFDELCSLVDPKVDAFTPKKGRPSVIMMVGLQGSGKTTTCSK 120
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
A ++Q++G K LV ADTFRAGAFDQLKQNA KA++P++GSYTE+DPV IA EGV+ FK
Sbjct: 121 LALHYQRRGLKSCLVAADTFRAGAFDQLKQNAIKARVPYFGSYTETDPVVIAKEGVDKFK 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXSV 240
+ D+IIVDTSGRH+QE LF EM ++S+A PD I ++D+SIG +
Sbjct: 181 NDRFDVIIVDTSGRHQQEQELFAEMVEISDAIRPDQTIMILDASIGQAAESQSKAFKETA 240
Query: 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300
GAVI+TK+DGHAKGGGALSAVAATK+P++FIGTGEH+++ E F + F+S+LLG+GD
Sbjct: 241 DFGAVIITKLDGHAKGGGALSAVAATKTPIVFIGTGEHINDLERFSPRSFISKLLGLGDL 300
Query: 301 SGFMDKIHEVVPMDQQPELLQKLSEGNFTLR 331
G M+ + + D++ +++ L +G FT+R
Sbjct: 301 EGLMEHVQSL-DFDKK-NMVKNLEQGKFTVR 329
>CGD|CAL0003314 [details] [associations]
symbol:SRP54 species:5476 "Candida albicans" [GO:0005783
"endoplasmic reticulum" evidence=IEA] [GO:0005786 "signal
recognition particle, endoplasmic reticulum targeting"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0005048
"signal sequence binding" evidence=IEA] [GO:0003924 "GTPase
activity" evidence=IEA] [GO:0008312 "7S RNA binding" evidence=IEA]
[GO:0006614 "SRP-dependent cotranslational protein targeting to
membrane" evidence=IEA] [GO:0006184 "GTP catabolic process"
evidence=IEA] HAMAP:MF_00306 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR006325 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
CGD:CAL0003314 GO:GO:0005525 GO:GO:0003924 GO:GO:0006184
EMBL:AACQ01000049 EMBL:AACQ01000048 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446
TIGRFAMs:TIGR01425 GO:GO:0048500 RefSeq:XP_717868.1
RefSeq:XP_717934.1 ProteinModelPortal:Q5A885 STRING:Q5A885
GeneID:3640377 GeneID:3640507 KEGG:cal:CaO19.10753
KEGG:cal:CaO19.3243 Uniprot:Q5A885
Length = 556
Score = 703 (252.5 bits), Expect = 2.8e-82, Sum P(2) = 2.8e-82
Identities = 135/236 (57%), Positives = 172/236 (72%)
Query: 98 KGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKI 157
K VIMFVGLQG+GKTT+CTK A Y++K+G+K LVCADTFRAGAFDQLKQNA KA I
Sbjct: 115 KESSHVIMFVGLQGAGKTTSCTKLAVYYKKRGFKVGLVCADTFRAGAFDQLKQNAIKANI 174
Query: 158 PFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLV 217
P+YGSY E DPV+IA EGV+ FK+E D+IIVDTSGRH+QE LF EM Q+ EA P
Sbjct: 175 PYYGSYLEPDPVKIAFEGVQKFKQEKFDIIIVDTSGRHRQEEQLFTEMVQIGEAVQPTQT 234
Query: 218 IFVMDSSIGXXXXXXXXXXXXSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGE 277
I VMD SIG S + G++I+TKMDGHAKGGGA+SAVAATK+P++FIGTGE
Sbjct: 235 IMVMDGSIGQAAESQARAFKESSNFGSIILTKMDGHAKGGGAISAVAATKTPIVFIGTGE 294
Query: 278 HMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV-VPMDQ-QPELLQKLSEGNFTLR 331
H+ + E+F F+S+LLG+GD G ++ + + + D+ + ++ + EG FTLR
Sbjct: 295 HVGDLEIFKPTTFISKLLGIGDIQGLIEHVQSLNLHQDEGHKQTIEHIKEGKFTLR 350
Score = 141 (54.7 bits), Expect = 2.8e-82, Sum P(2) = 2.8e-82
Identities = 34/101 (33%), Positives = 59/101 (58%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVLA LG + A+ + + + D+++ + + +I ALL++DV KLV +++ NIK +
Sbjct: 1 MVLADLGSRLRGALSSVESGS--DDEI-QQMIKDICSALLESDVNVKLVAKLRGNIKNKI 57
Query: 61 ---NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKK 98
N+ + NKR+ +Q+ IF+ELC ++D PKK
Sbjct: 58 DESNVSKETSAMNKRKKLQKIIFDELCALVDSNVEPPKPKK 98
>SGD|S000006292 [details] [associations]
symbol:SRP54 "Signal recognition particle (SRP) subunit
(homolog of mammalian SRP54)" species:4932 "Saccharomyces
cerevisiae" [GO:0008312 "7S RNA binding" evidence=IEA;IDA]
[GO:0006614 "SRP-dependent cotranslational protein targeting to
membrane" evidence=IEA;IMP] [GO:0006617 "SRP-dependent
cotranslational protein targeting to membrane, signal sequence
recognition" evidence=IC;ISA] [GO:0005525 "GTP binding"
evidence=IEA;ISA] [GO:0006184 "GTP catabolic process" evidence=IEA]
[GO:0005048 "signal sequence binding" evidence=IPI] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005096 "GTPase activator activity"
evidence=IEA] [GO:0048500 "signal recognition particle"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0045047
"protein targeting to ER" evidence=IPI] [GO:0005786 "signal
recognition particle, endoplasmic reticulum targeting"
evidence=IEA;IDA] [GO:0043547 "positive regulation of GTPase
activity" evidence=IEA] [GO:0003924 "GTPase activity" evidence=IEA]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR006325 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 SGD:S000006292
GO:GO:0005525 GO:GO:0005096 GO:GO:0043547 GO:GO:0003924
GO:GO:0006184 EMBL:BK006949 EMBL:U51033 GO:GO:0005048 GO:GO:0008312
SUPFAM:SSF47364 GO:GO:0005786 GO:GO:0006617 eggNOG:COG0541
HOGENOM:HOG000036165 KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446
TIGRFAMs:TIGR01425 GeneTree:ENSGT00550000074824 OrthoDB:EOG4TMV9N
EMBL:X16908 EMBL:M55517 EMBL:X51614 PIR:S69073 RefSeq:NP_015413.1
ProteinModelPortal:P20424 SMR:P20424 DIP:DIP-2943N IntAct:P20424
MINT:MINT-484768 STRING:P20424 PaxDb:P20424 PeptideAtlas:P20424
EnsemblFungi:YPR088C GeneID:856203 KEGG:sce:YPR088C CYGD:YPR088c
OMA:TAGRHKE NextBio:981405 Genevestigator:P20424 GermOnline:YPR088C
Uniprot:P20424
Length = 541
Score = 803 (287.7 bits), Expect = 6.0e-80, P = 6.0e-80
Identities = 163/338 (48%), Positives = 227/338 (67%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKV-LNECLNEITRALLQADVQFKLVREMQTNIKKI 59
MVLA LG I+ A+ + T D ++ L I ALL++DV LV +++ NI+
Sbjct: 1 MVLADLGKRINSAVNNAISNTQDDFTTSVDVMLKGIVTALLESDVNIALVSKLRNNIRSQ 60
Query: 60 V---NLDDLAAGHNK-RRIIQQAIFNELCKMLD-PG--KPSFTPKKGKPSVIMFVGLQGS 112
+ N + + + + +++IQ+ +F+ELCK++ G + +F PKK K ++IMFVGLQGS
Sbjct: 61 LLSENRSEKSTTNAQTKKLIQKTVFDELCKLVTCEGSEEKAFVPKKRKTNIIMFVGLQGS 120
Query: 113 GKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIA 172
GKTT+CTK A Y+ K+G+K LVCADTFRAGAFDQLKQNA +A+IPFYGSYTE+DP ++A
Sbjct: 121 GKTTSCTKLAVYYSKRGFKVGLVCADTFRAGAFDQLKQNAIRARIPFYGSYTETDPAKVA 180
Query: 173 VEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXX 232
EG+ FKKE D+IIVDTSGRH QE LF+EM ++S P+ I V+D+SIG
Sbjct: 181 EEGINKFKKEKFDIIIVDTSGRHHQEEELFQEMIEISNVIKPNQTIMVLDASIGQAAEQQ 240
Query: 233 XXXXXXSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVS 292
S GA+I+TKMDGHA+GGGA+SAVAAT +P+IFIGTGEH+ + E F K F+S
Sbjct: 241 SKAFKESSDFGAIILTKMDGHARGGGAISAVAATNTPIIFIGTGEHIHDLEKFSPKSFIS 300
Query: 293 RLLGMGDWSGFMDKIHEVVPMDQQPELLQKLSEGNFTL 330
+LLG+GD +++ V + ++ + +G FTL
Sbjct: 301 KLLGIGDIESLFEQLQTVSNKEDAKATMENIQKGKFTL 338
>TIGR_CMR|GSU_0642 [details] [associations]
symbol:GSU_0642 "signal recognition particle protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0009306 "protein secretion" evidence=ISS]
[GO:0048501 "signal recognition particle, plasma membrane
targeting" evidence=ISS] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR004780
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0003924 GO:GO:0006184
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7
TIGRFAMs:TIGR00959 OMA:GQQVVKI ProtClustDB:PRK10867
RefSeq:NP_951699.1 ProteinModelPortal:Q74FG7 GeneID:2685362
KEGG:gsu:GSU0642 PATRIC:22024031 BioCyc:GSUL243231:GH27-644-MONOMER
Uniprot:Q74FG7
Length = 452
Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
Identities = 110/334 (32%), Positives = 170/334 (50%)
Query: 2 VLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIK-KIV 60
+L L + +++ ++ E+ + E L E+ LL+ADV FK+V++ ++ + V
Sbjct: 1 MLENLSDKLDVLFKKLRGQGVMSEENIKEALREVRLVLLEADVNFKVVKDFVERVRVRAV 60
Query: 61 N---LDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSV-IMFVGLQGSGKTT 116
L L G +I+Q+ EL ++ G+ + KP V IM VGLQG+GKTT
Sbjct: 61 GTQVLQSLTPGQQVIKIVQE----ELVALMGGGEDNSLDLAAKPPVPIMMVGLQGAGKTT 116
Query: 117 TCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGV 176
+C K A + + +P LV AD +R A +QLK + + + S + DPV I E +
Sbjct: 117 SCGKLARLLKGQRRRPLLVPADVYRPAAIEQLKTLGRQLSVEVFDSRADQDPVDICREAL 176
Query: 177 ETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXX 236
D++I+DT+GRH+ + L E+ ++ EA P ++FV D+ G
Sbjct: 177 RYATLNGFDVVILDTAGRHQIDEYLMNELVRIKEAAEPREILFVADAMTGQEAVNVASGF 236
Query: 237 XXSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLG 296
+ + V++TK+DG AKGG ALS A T PV +G GE +D EVF VSR+LG
Sbjct: 237 NDRLDITGVVLTKLDGDAKGGAALSIRAVTGKPVKLVGVGEKLDALEVFHADRLVSRILG 296
Query: 297 MGDWSGFMDKIHEVVPMDQQPELLQKLSEGNFTL 330
MGD ++K + L QKL + F L
Sbjct: 297 MGDILTLVEKAQATFDSQEAERLQQKLKKSQFDL 330
>TAIR|locus:2150620 [details] [associations]
symbol:CPSRP54 "chloroplast signal recognition particle
54 kDa subunit" species:3702 "Arabidopsis thaliana" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0005048 "signal sequence binding" evidence=IDA]
[GO:0005525 "GTP binding" evidence=IEA;ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0005786 "signal recognition particle, endoplasmic
reticulum targeting" evidence=ISS] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA]
[GO:0006617 "SRP-dependent cotranslational protein targeting to
membrane, signal sequence recognition" evidence=ISS] [GO:0008312
"7S RNA binding" evidence=IEA;ISS] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0045038 "protein import into chloroplast
thylakoid membrane" evidence=IDA] [GO:0048500 "signal recognition
particle" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0080085 "signal recognition particle, chloroplast targeting"
evidence=IMP] [GO:0009507 "chloroplast" evidence=IDA] [GO:0010267
"production of ta-siRNAs involved in RNA interference"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=RCA] [GO:0051607 "defense response to virus" evidence=RCA]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR004780 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0003924
GO:GO:0006184 EMBL:AL162873 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 PDB:2HUG PDB:3UI2 PDBsum:2HUG
PDBsum:3UI2 TCDB:3.A.5.1.2 GO:GO:0080085 eggNOG:COG0541 KO:K03106
Gene3D:1.10.260.30 SUPFAM:SSF47446 EMBL:Z21970 EMBL:AF092168
EMBL:AY050999 EMBL:BT000976 IPI:IPI00538977 PIR:S36637
RefSeq:NP_196014.1 UniGene:At.435 ProteinModelPortal:P37107
SMR:P37107 DIP:DIP-752N IntAct:P37107 MINT:MINT-126488
STRING:P37107 PaxDb:P37107 PRIDE:P37107 ProMEX:P37107
EnsemblPlants:AT5G03940.1 GeneID:830273 KEGG:ath:AT5G03940
GeneFarm:1888 TAIR:At5g03940 HOGENOM:HOG000036164 InParanoid:P37107
OMA:DSGKTEQ PhylomeDB:P37107 ProtClustDB:CLSN2686225
EvolutionaryTrace:P37107 Genevestigator:P37107 GermOnline:AT5G03940
PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959 Uniprot:P37107
Length = 564
Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
Identities = 98/328 (29%), Positives = 170/328 (51%)
Query: 2 VLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIK-KIV 60
+ QL G + A ++ ++ + + E + +I RALL+ADV +VR ++ + V
Sbjct: 77 MFGQLTGGLEAAWSKLKGEEVLTKDNIAEPMRDIRRALLEADVSLPVVRRFVQSVSDQAV 136
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
+ + +++++ + +EL K++ K P+VI+ GLQG GKTT C K
Sbjct: 137 GMGVIRGVKPDQQLVK-IVHDELVKLMGGEVSELQFAKSGPTVILLAGLQGVGKTTVCAK 195
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
A Y +K+G L+ D +R A DQL + +P Y + T+ P IA +G++ K
Sbjct: 196 LACYLKKQGKSCMLIAGDVYRPAAIDQLVILGEQVGVPVYTAGTDVKPADIAKQGLKEAK 255
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXSV 240
K N D++I+DT+GR + + + +E++ V + NP V+ V+D+ G +
Sbjct: 256 KNNVDVVIMDTAGRLQIDKGMMDELKDVKKFLNPTEVLLVVDAMTGQEAAALVTTFNVEI 315
Query: 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300
+ I+TK+DG ++GG ALS + P+ +G GE M++ E F R+LGMGD
Sbjct: 316 GITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDV 375
Query: 301 SGFMDKIHEVVPMDQQPELLQKLSEGNF 328
F++K EV+ + +L +K+ F
Sbjct: 376 LSFVEKATEVMRQEDAEDLQKKIMSAKF 403
>TIGR_CMR|CHY_1434 [details] [associations]
symbol:CHY_1434 "signal recognition particle protein"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003924 "GTPase activity" evidence=ISS] [GO:0005048 "signal
sequence binding" evidence=ISS] [GO:0009306 "protein secretion"
evidence=ISS] [GO:0048501 "signal recognition particle, plasma
membrane targeting" evidence=ISS] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR004780
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0003924 GO:GO:0006184 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 eggNOG:COG0541 HOGENOM:HOG000036165
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 PANTHER:PTHR11564:SF7
TIGRFAMs:TIGR00959 OMA:GQQVVKI RefSeq:YP_360266.1
ProteinModelPortal:Q3AC68 SMR:Q3AC68 STRING:Q3AC68 GeneID:3728502
KEGG:chy:CHY_1434 PATRIC:21275999
BioCyc:CHYD246194:GJCN-1433-MONOMER Uniprot:Q3AC68
Length = 446
Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
Identities = 109/339 (32%), Positives = 172/339 (50%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIK-KI 59
MV L + +++ + E+ +N L E+ ALL+ADV F++V++ +K K
Sbjct: 1 MVFENLSNKLQEVFKKLKGKGRLTEEDVNLALREVRIALLEADVNFQVVKDFIAKVKEKA 60
Query: 60 VN---LDDLAAGHNKRRIIQQAIFNEL----CKMLDPGKPSFTPKKGKPSVIMFVGLQGS 112
V L+ L G +I+ + + N + K+ D G P P++IM VGLQG+
Sbjct: 61 VGHEVLESLTPGQQVIKIVHEELINLMGKTNAKLNDAGSP--------PTIIMLVGLQGA 112
Query: 113 GKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIA 172
GKTTT K AY +K+G KP LV AD +R A QL+ +P + + E PV IA
Sbjct: 113 GKTTTAAKLAYLLKKQGKKPLLVAADVYRPAAIKQLQVLGDTIDVPVF-TMGEQSPVDIA 171
Query: 173 VEGVETFKKENC-DLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXX 231
+ F K N + +I+DT+GR L +E++++ + +P ++ V+D+ G
Sbjct: 172 KASIN-FAKSNLKNYVIIDTAGRLHINEELMDELKKIKDVVHPHEILLVVDAMTGQDAVN 230
Query: 232 XXXXXXXSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFV 291
+ + VI+TK+DG KGG ALS A T P+ F G GE ++ E F
Sbjct: 231 VAKSFNDELGLTGVILTKLDGDTKGGAALSVKAVTGCPIKFAGMGEKIENLEPFYPDRMA 290
Query: 292 SRLLGMGDWSGFMDKIHEVVPMDQQPELLQKLSEGNFTL 330
SR+LGMGD ++K E + ++ ++ +KL F L
Sbjct: 291 SRILGMGDVLTLIEKAKEALDAEKAQKMQEKLKSREFDL 329
>TIGR_CMR|BA_3983 [details] [associations]
symbol:BA_3983 "signal recognition particle protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0009306 "protein secretion" evidence=ISS]
[GO:0048501 "signal recognition particle, plasma membrane
targeting" evidence=ISS] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR004780
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003924 GO:GO:0006184 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786 KO:K03106
Gene3D:1.10.260.30 SUPFAM:SSF47446 HOGENOM:HOG000036164
PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959 OMA:GQQVVKI
ProtClustDB:PRK10867 RefSeq:NP_846225.1 RefSeq:YP_020622.1
RefSeq:YP_029947.1 HSSP:O07347 ProteinModelPortal:Q81WJ2 SMR:Q81WJ2
EnsemblBacteria:EBBACT00000009811 EnsemblBacteria:EBBACT00000016655
EnsemblBacteria:EBBACT00000023730 GeneID:1087538 GeneID:2820002
GeneID:2848277 KEGG:ban:BA_3983 KEGG:bar:GBAA_3983 KEGG:bat:BAS3696
BioCyc:BANT260799:GJAJ-3754-MONOMER
BioCyc:BANT261594:GJ7F-3871-MONOMER Uniprot:Q81WJ2
Length = 449
Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
Identities = 105/335 (31%), Positives = 171/335 (51%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNI-KKI 59
M L + + +Q++ + E + E + E+ ALL+ADV FK+V++ + ++
Sbjct: 1 MAFEGLADRLQQTMQKIRGKGKVSEADVKEMMREVRLALLEADVNFKVVKDFVKRVSERA 60
Query: 60 VNLD---DLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTT 116
V D L G +++Q+ EL +++ + P+VIM VGLQG+GKTT
Sbjct: 61 VGQDVMKSLTPGQQVIKVVQE----ELTELMGGEQSKIAIANKPPTVIMMVGLQGAGKTT 116
Query: 117 TCTKYAYYHQKK-GWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEG 175
T K A +KK KP LV AD +R A QL+ + +P + + PV IA +
Sbjct: 117 TTGKLANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPVEIAKQA 176
Query: 176 VETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXX 235
+ K+++ D +++DT+G + L +E+ +V E PD + V+D+ G
Sbjct: 177 IAKAKEDHHDYVLIDTAGHLHIDEELMDELAKVKEVAKPDEIFLVVDAMTGQDAVNVAQS 236
Query: 236 XXXSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLL 295
+ + V++TK+DG +GG ALS A T +P+ F G GE +D E F + SR+L
Sbjct: 237 FHEQLGLTGVVLTKLDGDTRGGAALSIKAVTNTPIKFAGMGEKLDALEAFHPERMASRIL 296
Query: 296 GMGDWSGFMDKIHEVVPMDQQPELLQKLSEGNFTL 330
GMGD ++K V ++ EL QK+ +FTL
Sbjct: 297 GMGDVLTLIEKAQATVDEEKAKELEQKMRTLSFTL 331
>UNIPROTKB|P66844 [details] [associations]
symbol:ffh "Signal recognition particle protein"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0040007 "growth" evidence=IMP] HAMAP:MF_00306
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR004780 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0005886 GO:GO:0040007 GO:GO:0005618 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003924
GO:GO:0006184 EMBL:BX842581 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 TCDB:3.A.5.2.2 GO:GO:0005786 eggNOG:COG0541
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 HOGENOM:HOG000036164
PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959 OMA:GQQVVKI
ProtClustDB:PRK10867 PIR:D70747 RefSeq:NP_217432.1
RefSeq:NP_337496.1 RefSeq:YP_006516369.1 ProteinModelPortal:P66844
SMR:P66844 PRIDE:P66844 EnsemblBacteria:EBMYCT00000003158
EnsemblBacteria:EBMYCT00000069261 GeneID:13317709 GeneID:888242
GeneID:925291 KEGG:mtc:MT2984 KEGG:mtu:Rv2916c KEGG:mtv:RVBD_2916c
PATRIC:18128328 TubercuList:Rv2916c Uniprot:P66844
Length = 525
Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
Identities = 106/332 (31%), Positives = 166/332 (50%)
Query: 6 LGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDL 65
L ++ A+Q + + + ++ EI ALL+ADV +VR IK+ ++
Sbjct: 5 LSDRLTAALQGLRGKGRLTDADIDATTREIRLALLEADVSLPVVRAFIHRIKERARGAEV 64
Query: 66 AAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYH 125
++ N + + + + EL +L K P+V+M GLQGSGKTT K A
Sbjct: 65 SSALNPAQQVVKIVNEELISILGGETRELAFAKTPPTVVMLAGLQGSGKTTLAGKLAARL 124
Query: 126 QKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFY----GSYTES---DPVRIAVEGVET 178
+ +G P LV D R A +QL+ +A +P + G+ ES DPV +A G+
Sbjct: 125 RGQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVFAPHPGASPESGPGDPVAVAAAGLAE 184
Query: 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXX 238
+ ++ D++IVDT+GR + L + + +A NPD V+FV+D+ IG
Sbjct: 185 ARAKHFDVVIVDTAGRLGIDEELMAQAAAIRDAINPDEVLFVLDAMIGQDAVTTAAAFGE 244
Query: 239 SVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMG 298
V V +TK+DG A+GG ALS T P++F TGE +++F+VF SR+LGMG
Sbjct: 245 GVGFTGVALTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPDRMASRILGMG 304
Query: 299 DWSGFMDKIHEVVPMDQQPELLQKLSEGNFTL 330
D +++ +V Q E K+ G TL
Sbjct: 305 DVLSLIEQAEQVFDAQQAEEAAAKIGAGELTL 336
>UNIPROTKB|Q97QD2 [details] [associations]
symbol:ffh "Signal recognition particle protein"
species:170187 "Streptococcus pneumoniae TIGR4" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR004780
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0003924 GO:GO:0006184
EMBL:AE005672 GenomeReviews:AE005672_GR GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7
TIGRFAMs:TIGR00959 OMA:GQQVVKI ProtClustDB:PRK10867 HSSP:O07347
PIR:F95149 RefSeq:NP_345751.1 ProteinModelPortal:Q97QD2
EnsemblBacteria:EBSTRT00000025249 GeneID:931801 KEGG:spn:SP_1287
PATRIC:19706973 Uniprot:Q97QD2
Length = 523
Score = 400 (145.9 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
Identities = 103/335 (30%), Positives = 160/335 (47%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
M L + + + I E + E EI ALL+ADV +V++ IKK+
Sbjct: 1 MAFESLTERLQNVFKNLRKKGKISESDVQEATKEIRLALLEADVALPVVKDF---IKKV- 56
Query: 61 NLDDLAAGH------NKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGK 114
+ A GH N + I + + EL +L P++IM VGLQG+GK
Sbjct: 57 --RERAVGHEVIDTLNPAQQIIKIVDEELTAVLGSDTAEIIKSPKIPTIIMMVGLQGAGK 114
Query: 115 TTTCTKYAYYHQKK-GWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAV 173
TT K A +K+ +P ++ AD +R A DQLK + +P + TE V I
Sbjct: 115 TTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQIDVPVFALGTEVPAVEIVR 174
Query: 174 EGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXX 233
+G+E + + D +++DT+GR + + L E+R V P+ ++ V+D+ IG
Sbjct: 175 QGLEQAQTNHNDYVLIDTAGRLQIDELLMNELRDVKALAQPNEILLVVDAMIGQEAANVA 234
Query: 234 XXXXXSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSR 293
+ V VI+TK+DG +GG ALS T P+ F GTGE + + E F SR
Sbjct: 235 REFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIKFTGTGEKITDIETFHPDRMSSR 294
Query: 294 LLGMGDWSGFMDKIHEVVPMDQQPELLQKLSEGNF 328
+LGMGD ++K + + E+ +K+ E F
Sbjct: 295 ILGMGDMLTLIEKASQEYDEQKALEMAEKMRENTF 329
Score = 38 (18.4 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 299 DWSGFMDKIHEVVPMDQQPELLQKL 323
D++ F+D++ +V M +LL+ +
Sbjct: 330 DFNDFIDQLDQVQNMGPMEDLLKMI 354
>TIGR_CMR|SO_1356 [details] [associations]
symbol:SO_1356 "signal recognition particle protein Ffh"
species:211586 "Shewanella oneidensis MR-1" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0009306 "protein secretion" evidence=ISS]
[GO:0048501 "signal recognition particle, plasma membrane
targeting" evidence=ISS] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR004780
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0003924 GO:GO:0006184
EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR001251
PROSITE:PS50191 GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364
GO:GO:0005786 KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446
HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959
OMA:GQQVVKI ProtClustDB:PRK10867 HSSP:O07347 RefSeq:NP_716976.1
ProteinModelPortal:Q8EH73 GeneID:1169177 KEGG:son:SO_1356
PATRIC:23522366 Uniprot:Q8EH73
Length = 457
Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
Identities = 99/323 (30%), Positives = 166/323 (51%)
Query: 10 ISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGH 69
+SR ++ +S + E+ + E L E+ ALL+ADV +VRE N+K+ ++A
Sbjct: 9 LSRTLKNISGRGRLTEENVKETLREVRMALLEADVALPVVREFVNNVKERAVGQEVAKSL 68
Query: 70 NKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKG 129
+ + + + +EL K + + P+V+M GLQG+GKTT+ K + +
Sbjct: 69 SPGQAFIKIVQSELEKSMGEANQALDLATQPPAVVMMAGLQGAGKTTSVAKLGKLLRTRH 128
Query: 130 WKPALVC-ADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLII 188
K LV AD +R A QL+ AT+ + F+ S P+ IA + K + D++I
Sbjct: 129 KKSVLVVSADVYRPAAIKQLETLATEVDVEFFPSDVSQKPIDIAKAAIAHAKLKFIDVVI 188
Query: 189 VDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXSVSVGAVIVT 248
+DT+GR + A+ +E++ + A P +FV+D+ G ++ + VI+T
Sbjct: 189 LDTAGRLHVDEAMMDEIKALHAALKPIETLFVVDAMTGQDAANTAKAFNEALPLTGVILT 248
Query: 249 KMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIH 308
K+DG A+GG ALS T P+ F+G GE D E F SR+LGMGD ++++
Sbjct: 249 KVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRILGMGDVLSLIEEVE 308
Query: 309 EVVPMDQQPELLQKLSEG-NFTL 330
V ++ +L K+ +G +F L
Sbjct: 309 RGVDKEKAMKLASKVKQGGSFDL 331
>TIGR_CMR|CBU_0450 [details] [associations]
symbol:CBU_0450 "signal recognition particle protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0009306 "protein secretion" evidence=ISS]
[GO:0048501 "signal recognition particle, plasma membrane
targeting" evidence=ISS] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR004780
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0003924 GO:GO:0006184
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7
TIGRFAMs:TIGR00959 OMA:GQQVVKI ProtClustDB:PRK10867 HSSP:O07347
RefSeq:NP_819486.1 ProteinModelPortal:Q83E79 PRIDE:Q83E79
GeneID:1208334 KEGG:cbu:CBU_0450 PATRIC:17929591
BioCyc:CBUR227377:GJ7S-448-MONOMER Uniprot:Q83E79
Length = 461
Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
Identities = 95/327 (29%), Positives = 167/327 (51%)
Query: 2 VLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVN 61
+L L ++ +I ++ + E+ + L++I AL++ADV +V++ ++++
Sbjct: 1 MLNNLTNRLTTSINKLRGLGRLTEENIQSTLHDIRSALIEADVALPVVKDFIEHVREKAL 60
Query: 62 LDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKY 121
++ + + + +EL +L P VI+ GLQGSGKTTT K
Sbjct: 61 GQEVIGNVRPGEALVKVVQDELTHLLGDELVEINLNAQPPIVIVMAGLQGSGKTTTVAKL 120
Query: 122 AYYHQKKGWKPALVC-ADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
A + + K +V AD +R A QL+ A++ F+ + + PV IA ++ +
Sbjct: 121 ARWLLEIQKKSVMVASADVYRPAAIQQLETLASQINAIFFPTQADQKPVEIAKAALKQAE 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXSV 240
K+ D++I+DT+GR + L EEM+ +S+A P ++ V+DS +G ++
Sbjct: 181 KQFMDVLILDTAGRLHIDNVLMEEMKAISDAVTPTEILLVVDSMMGQDAANVAKSFNDTL 240
Query: 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300
+ VI+TK+DG +GG ALS T+ P+ F+G GE +D E F SR+LGMGD
Sbjct: 241 PLTGVILTKLDGDTRGGAALSMRMITQKPIKFVGVGEKIDALEPFHPNRMASRILGMGDI 300
Query: 301 SGFMDKIHEVVPMDQQPELLQKLSEGN 327
+++ V Q ++ +KL +GN
Sbjct: 301 VSLVEEAQRKVDQKQAAKIAKKLQKGN 327
>TIGR_CMR|CPS_4073 [details] [associations]
symbol:CPS_4073 "signal recognition particle protein"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005786 "signal recognition particle,
endoplasmic reticulum targeting" evidence=ISS] [GO:0006617
"SRP-dependent cotranslational protein targeting to membrane,
signal sequence recognition" evidence=ISS] HAMAP:MF_00306
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR004780 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0003924 GO:GO:0006184 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005786
eggNOG:COG0541 KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446
HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959
OMA:GQQVVKI ProtClustDB:PRK10867 RefSeq:YP_270728.1
ProteinModelPortal:Q47WU4 SMR:Q47WU4 STRING:Q47WU4 GeneID:3519232
KEGG:cps:CPS_4073 PATRIC:21471017
BioCyc:CPSY167879:GI48-4086-MONOMER Uniprot:Q47WU4
Length = 463
Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
Identities = 98/327 (29%), Positives = 164/327 (50%)
Query: 6 LGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDL 65
L +S+ ++ +S + E + E L E+ ALL+ADV ++RE +K+ D+
Sbjct: 5 LSERLSKTLKNISGRGRLTEDNIKETLREVRMALLEADVALPVIREFIAKVKEKAVGTDV 64
Query: 66 AAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYH 125
+ +I + + EL + + P+V++ GLQG+GKTT+ K A +
Sbjct: 65 SKSLTPGQIFVKIVQKELESAMGEVNEGLDLRAAPPAVVLMAGLQGAGKTTSVAKLAKFL 124
Query: 126 QKKGWKPALVC-ADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENC 184
++ K LV AD +R A QL+ A + + F+ S + P+ IA ++ KK
Sbjct: 125 TEREKKKVLVVSADVYRPAAIKQLETLAEEISVGFFPSDIKQKPIDIANAAIDHAKKNFY 184
Query: 185 DLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXSVSVGA 244
D++IVDT+GR + + E++Q+ A NP +F +D+ G ++ +
Sbjct: 185 DVLIVDTAGRLHIDENMMAEIQQLHAAINPIETLFTVDAMTGQDAANTAKAFNDALPLTG 244
Query: 245 VIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFM 304
+I+TK DG A+GG ALS T P+ F+G GE ++ E F SR+LGMGD +
Sbjct: 245 IILTKTDGDARGGAALSIRHITGKPIKFMGVGEKIEALEPFHPDRIASRILGMGDVLSLV 304
Query: 305 DKIHEVVPMDQQPELLQKLSEGN-FTL 330
++I + V Q +L K+ G F+L
Sbjct: 305 EEIEQKVDRKQAEKLANKVKSGKGFSL 331
>TIGR_CMR|CJE_0809 [details] [associations]
symbol:CJE_0809 "signal recognition particle protein"
species:195099 "Campylobacter jejuni RM1221" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0009306 "protein secretion" evidence=ISS]
[GO:0048501 "signal recognition particle, plasma membrane
targeting" evidence=ISS] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR004780 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0003924 GO:GO:0006184 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364 eggNOG:COG0541
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 HOGENOM:HOG000036164
OMA:DSGKTEQ PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959
ProtClustDB:PRK10867 GO:GO:0048500 RefSeq:YP_178813.1
ProteinModelPortal:Q5HV72 STRING:Q5HV72 GeneID:3230759
KEGG:cjr:CJE0809 PATRIC:20043363 BioCyc:CJEJ195099:GJC0-824-MONOMER
Uniprot:Q5HV72
Length = 445
Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
Identities = 98/307 (31%), Positives = 157/307 (51%)
Query: 24 DEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNEL 83
DEK L L + +ALL+ADV K+ +E+ T I++ V + G +++ + AI L
Sbjct: 21 DEKALKNALETLKKALLKADVHHKVTKELLTLIEEDVKQN----GIGQKQFLN-AIKVNL 75
Query: 84 CKMLDP-GK-PSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141
+L GK F P+V++ GLQG GKTT+ K A Y + + K + D R
Sbjct: 76 ENILSVNGKNQGFVFASKPPTVVLMAGLQGGGKTTSTIKLANYLKLRNKKVLVAACDLQR 135
Query: 142 AGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAAL 201
A +QL+Q +I + E DP+R+A E ++ + D+++VDT+GR + AL
Sbjct: 136 LAAVEQLRQLCEANEIELFFIENEKDPIRVAKEALKKAESSMVDVLLVDTAGRLAIDEAL 195
Query: 202 FEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXSVSVGAVIVTKMDGHAKGGGALS 261
E++ V + NPD + +V D+ G ++++ VI++K D KGG AL
Sbjct: 196 MNELKAVKDVLNPDEIFYVADAMSGQDGVKTAASFNEALNISGVILSKFDADTKGGVALG 255
Query: 262 AVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELLQ 321
P+ FIG GE + + EVF VSR++G GD + +K V+ + +L Q
Sbjct: 256 IAKQIGIPLRFIGVGEKVADLEVFIPDRIVSRIMGEGDLATLAEKTAAVIDEKEAKKLNQ 315
Query: 322 KLSEGNF 328
K+ +G F
Sbjct: 316 KIKKGEF 322
>TIGR_CMR|ECH_0475 [details] [associations]
symbol:ECH_0475 "signal recognition particle protein"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003924
"GTPase activity" evidence=ISS] [GO:0005048 "signal sequence
binding" evidence=ISS] [GO:0006617 "SRP-dependent cotranslational
protein targeting to membrane, signal sequence recognition"
evidence=ISS] [GO:0009306 "protein secretion" evidence=ISS]
[GO:0048501 "signal recognition particle, plasma membrane
targeting" evidence=ISS] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR004780 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 EMBL:CP000236 GenomeReviews:CP000236_GR
GO:GO:0003924 GO:GO:0006184 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 eggNOG:COG0541 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7
TIGRFAMs:TIGR00959 OMA:GQQVVKI ProtClustDB:PRK10867 GO:GO:0048500
RefSeq:YP_507291.1 ProteinModelPortal:Q2GGZ2 STRING:Q2GGZ2
GeneID:3927281 KEGG:ech:ECH_0475 PATRIC:20576422
BioCyc:ECHA205920:GJNR-477-MONOMER Uniprot:Q2GGZ2
Length = 448
Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
Identities = 100/327 (30%), Positives = 165/327 (50%)
Query: 6 LGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIK-KIVNLDD 64
L S++ IQ+M + +I + + + E+ ALL+ADV +V++ +N+K KIV
Sbjct: 5 LTSSLTNVIQKMQSKHVISSEDFDAAMEEVKVALLEADVSLAVVKDFISNVKEKIVG-GT 63
Query: 65 LAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKP-SVIMFVGLQGSGKTTTCTKYAY 123
G ++I + I + L ++L G KP SVIM VGLQG GKTTT K A
Sbjct: 64 TVKGVLPTQMIIKKIQDCLIEVL--GSEKCELDISKPLSVIMMVGLQGVGKTTTTAKLAL 121
Query: 124 YHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKEN 183
+ K + + D +R A QL+ + + P+ I ++ ++ N
Sbjct: 122 KLKNKKKEVVMASLDVYRPAAQKQLEILGKQIDVQTLPIIENQAPIDIVKRAMDNAQQAN 181
Query: 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXSVSVG 243
CD++I+DT+GR + + EE+R + + T+P VI V+DS IG ++ +
Sbjct: 182 CDVLILDTAGRLHVDQVMMEELRAIKDLTSPSEVILVVDSMIGQDAINVAKSFNDNIGIT 241
Query: 244 AVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGF 303
+I+T++DG ++GG ALS + SP+ FI GE + + + F + R+L MGD
Sbjct: 242 GIILTRIDGDSRGGAALSMKMSVGSPIKFIANGEKLSDLDDFYPERIAKRILNMGDVVSL 301
Query: 304 MDKIHEVVPMDQQPELLQKLSEGNFTL 330
++K E V E+ +K +G F L
Sbjct: 302 VEKATEAVGKHAIDEMQKKAQKGKFDL 328
>UNIPROTKB|P0AGD7 [details] [associations]
symbol:ffh species:83333 "Escherichia coli K-12"
[GO:0048500 "signal recognition particle" evidence=IEA;IMP]
[GO:0005525 "GTP binding" evidence=IEA;ISS;IMP;IDA] [GO:0006612
"protein targeting to membrane" evidence=IMP] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0003924 "GTPase
activity" evidence=IEA;ISS;IMP;IDA] [GO:0008312 "7S RNA binding"
evidence=IEA] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=IEA] [GO:0005786 "signal
recognition particle, endoplasmic reticulum targeting"
evidence=IEA] [GO:0006184 "GTP catabolic process" evidence=IEA;IMP]
[GO:0003723 "RNA binding" evidence=IEA] HAMAP:MF_00306
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR004780 InterPro:IPR013822 InterPro:IPR022941
Pfam:PF00448 Pfam:PF02881 Pfam:PF02978 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0006612 GO:GO:0003924 GO:GO:0008312 PDB:2XXA PDBsum:2XXA
TCDB:3.A.5.1.1 GO:GO:0006614 SUPFAM:SSF47364 PDB:2XKV PDBsum:2XKV
EMBL:X01818 PDB:2J28 PDBsum:2J28 GO:GO:0005786 eggNOG:COG0541
KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446 HOGENOM:HOG000036164
PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959 OMA:GQQVVKI PIR:E65039
RefSeq:NP_417101.1 RefSeq:YP_490833.1 PDB:1DUL PDB:1HQ1 PDB:2PXB
PDB:2PXD PDB:2PXE PDB:2PXF PDB:2PXK PDB:2PXL PDB:2PXP PDB:2PXQ
PDB:2PXT PDB:2PXU PDB:2PXV PDB:3LQX PDBsum:1DUL PDBsum:1HQ1
PDBsum:2PXB PDBsum:2PXD PDBsum:2PXE PDBsum:2PXF PDBsum:2PXK
PDBsum:2PXL PDBsum:2PXP PDBsum:2PXQ PDBsum:2PXT PDBsum:2PXU
PDBsum:2PXV PDBsum:3LQX ProteinModelPortal:P0AGD7 SMR:P0AGD7
DIP:DIP-31865N IntAct:P0AGD7 MINT:MINT-1218614 PRIDE:P0AGD7
EnsemblBacteria:EBESCT00000004690 EnsemblBacteria:EBESCT00000014850
GeneID:12933092 GeneID:947102 KEGG:ecj:Y75_p2558 KEGG:eco:b2610
PATRIC:32120619 EchoBASE:EB0296 EcoGene:EG10300
ProtClustDB:PRK10867 BioCyc:EcoCyc:EG10300-MONOMER
BioCyc:ECOL316407:JW5414-MONOMER EvolutionaryTrace:P0AGD7
Genevestigator:P0AGD7 GO:GO:0048500 Uniprot:P0AGD7
Length = 453
Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
Identities = 101/323 (31%), Positives = 163/323 (50%)
Query: 10 ISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIK-KIVNLD---DL 65
+SR ++ +S + E + + L E+ ALL+ADV +VRE +K K V + L
Sbjct: 9 LSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSL 68
Query: 66 AAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYH 125
G +I++ NEL + + P+V++ GLQG+GKTT+ K +
Sbjct: 69 TPGQEFVKIVR----NELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFL 124
Query: 126 QKKGWKPALVC-ADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENC 184
++K K LV AD +R A QL+ A + + F+ S PV I ++ K +
Sbjct: 125 REKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKFY 184
Query: 185 DLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXSVSVGA 244
D+++VDT+GR + A+ +E++QV + NP +FV+D+ G ++ +
Sbjct: 185 DVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEALPLTG 244
Query: 245 VIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFM 304
V++TK+DG A+GG ALS T P+ F+G GE + E F SR+LGMGD +
Sbjct: 245 VVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDVLSLI 304
Query: 305 DKIHEVVPMDQQPELLQKLSEGN 327
+ I V Q +L KL +G+
Sbjct: 305 EDIESKVDRAQAEKLASKLKKGD 327
>UNIPROTKB|O07347 [details] [associations]
symbol:ffh "Signal recognition particle protein"
species:271 "Thermus aquaticus" [GO:0005515 "protein binding"
evidence=IPI] HAMAP:MF_00306 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR004780 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0003924 GO:GO:0006184 GO:GO:0008312
GO:GO:0006614 SUPFAM:SSF47364 PDB:1OKK PDB:1RJ9 PDB:2CNW PDB:2J7P
PDB:2XKV PDBsum:1OKK PDBsum:1RJ9 PDBsum:2CNW PDBsum:2J7P
PDBsum:2XKV PDB:1RY1 PDBsum:1RY1 GO:GO:0005786 Gene3D:1.10.260.30
SUPFAM:SSF47446 PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959
EMBL:U82109 PDB:1FFH PDB:1JPJ PDB:1JPN PDB:1LS1 PDB:1NG1 PDB:1O87
PDB:2C03 PDB:2C04 PDB:2FFH PDB:2IY3 PDB:2J45 PDB:2J46 PDB:2NG1
PDB:3NG1 PDBsum:1FFH PDBsum:1JPJ PDBsum:1JPN PDBsum:1LS1
PDBsum:1NG1 PDBsum:1O87 PDBsum:2C03 PDBsum:2C04 PDBsum:2FFH
PDBsum:2IY3 PDBsum:2J45 PDBsum:2J46 PDBsum:2NG1 PDBsum:3NG1
ProteinModelPortal:O07347 SMR:O07347 IntAct:O07347
EvolutionaryTrace:O07347 Uniprot:O07347
Length = 430
Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
Identities = 105/332 (31%), Positives = 161/332 (48%)
Query: 5 QLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDD 64
QL + AI ++ I E+ L L EI RAL+ ADV ++ R+ +++
Sbjct: 4 QLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQ 63
Query: 65 LAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYY 124
+ +I ++ L + L G+ K + ++ VGLQGSGKTTT K A Y
Sbjct: 64 VLESLTPAEVILATVYEALKEALG-GEARLPVLKDR-NLWFLVGLQGSGKTTTAAKLALY 121
Query: 125 HQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENC 184
++ KG +P LV ADT R A +QL+ K +P P I E + E
Sbjct: 122 YKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEAR 181
Query: 185 DLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXSVSVGA 244
DLI+VDT+GR + + L E+ ++ E PD V+ V+D+ G V V
Sbjct: 182 DLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTG 241
Query: 245 VIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFM 304
+++TK+DG A+GG ALSA T P+ F G E + E F + R+LGMGD +
Sbjct: 242 LVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGMGDVASLA 301
Query: 305 DKIHEVVPMDQQPELLQKLSEGNFTLRIMFSL 336
+K+ + P+ ++LS +F L+ M +L
Sbjct: 302 EKVRAAGLEAEAPKSAKELSLEDF-LKQMQNL 332
>TIGR_CMR|VC_0560 [details] [associations]
symbol:VC_0560 "signal recognition particle protein"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0009306 "protein secretion" evidence=ISS]
[GO:0048501 "signal recognition particle, plasma membrane
targeting" evidence=ISS] HAMAP:MF_00306 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR004780
InterPro:IPR013822 InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003924 GO:GO:0006184 GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005786 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959
OMA:GQQVVKI ProtClustDB:PRK10867 PIR:H82306 RefSeq:NP_230211.1
HSSP:P07019 ProteinModelPortal:Q9KUG1 SMR:Q9KUG1 DNASU:2615237
GeneID:2615237 KEGG:vch:VC0560 PATRIC:20080238 Uniprot:Q9KUG1
Length = 461
Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
Identities = 97/321 (30%), Positives = 164/321 (51%)
Query: 10 ISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKK-IVNLD---DL 65
+S+ ++ +S + E + + L E+ ALL+ADV +VR+ +K+ V ++ L
Sbjct: 9 LSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVNRVKEGAVGVEVSKSL 68
Query: 66 AAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYH 125
G +I++Q +L ++ + P+VI+ GLQG+GKTT+ K +
Sbjct: 69 TPGQEFIKIVRQ----QLEAVMGESNEALNLAAQPPAVILMAGLQGAGKTTSVGKLSKLL 124
Query: 126 QKKGWKPALVC-ADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENC 184
+++ K LV AD +R A QL+ A + F+ S + P+ IA ++ KK+
Sbjct: 125 KERDKKKVLVVSADVYRPAAIKQLETLANDLGVDFFPSTPDQKPIDIANAAIDHAKKKFY 184
Query: 185 DLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXSVSVGA 244
D++IVDT+GR + + E++ + +A NP +FV+D+ G ++ +
Sbjct: 185 DVLIVDTAGRLAIDEQMMAEIQALHKAINPVETLFVVDAMTGQDAADTAKAFGDALPLTG 244
Query: 245 VIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFM 304
VI+TK+DG A+GG ALS T P+ FIG GE D E F SR+LGMGD +
Sbjct: 245 VILTKVDGDARGGAALSVRHITGKPIKFIGVGEKTDALEPFHPDRIASRILGMGDVLSLI 304
Query: 305 DKIHEVVPMDQQPELLQKLSE 325
+ + V ++ +L +K E
Sbjct: 305 EDLQRNVDQEKAEKLAKKFKE 325
>NCBI_NP|NP_355632.2 [details] [associations]
symbol:ffh "signal recognition particle protein"
species:176299 "Agrobacterium fabrum str. C58" [GO:0009306 "protein
secretion" evidence=ISS] REFSEQ:NC_003062 Ncbi:NP_355632
Length = 523
Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
Identities = 97/301 (32%), Positives = 150/301 (49%)
Query: 32 LNEITRALLQADVQFKLVREMQTNIK-KIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPG 90
L E+ RALL+ADV ++VR ++ K V L + + +++ + +EL +ML
Sbjct: 31 LREVRRALLEADVALEVVRSFTDRVREKAVGAAVLKSIKPGQMVVK-IVHDELVEMLGTE 89
Query: 91 KPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA-DTFRAGAFDQLK 149
S P VIM VGLQGSGKTTT K A + K L+ + DT R A +QL+
Sbjct: 90 GVSIDLHAAAPVVIMMVGLQGSGKTTTTGKIAKRLTDRDKKKVLMASLDTRRPAAQEQLR 149
Query: 150 QNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVS 209
Q + + P IA V+ K D++I+DT+GR + L EM +
Sbjct: 150 QLGVQTGVDTLPIIAGQSPTDIAARAVQAAKLGGHDVVILDTAGRTHIDEPLMLEMADIK 209
Query: 210 EATNPDLVIFVMDSSIGXXXXXXXXXXXXSVSVGAVIVTKMDGHAKGGGALSAVAATKSP 269
+ +NP ++ V DS G V + +++T+MDG +GG ALS A T P
Sbjct: 210 KKSNPHEILLVADSLTGQDAVNLARNFDERVGITGLVLTRMDGDGRGGAALSMRAVTGKP 269
Query: 270 VIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELLQKLSEGNFT 329
+ IG GE M+E + F + R+LGMGD ++K E + ++ + +K+++G F
Sbjct: 270 IKLIGIGERMNELDEFHPRRIADRILGMGDIVSLVEKAAENIDAEKARSMAEKMAKGKFD 329
Query: 330 L 330
L
Sbjct: 330 L 330
>TIGR_CMR|SPO_3246 [details] [associations]
symbol:SPO_3246 "signal recognition particle protein"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0006617 "SRP-dependent cotranslational protein
targeting to membrane, signal sequence recognition" evidence=ISS]
[GO:0009306 "protein secretion" evidence=ISS] [GO:0048501 "signal
recognition particle, plasma membrane targeting" evidence=ISS]
HAMAP:MF_00306 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004125 InterPro:IPR004780 InterPro:IPR013822
InterPro:IPR022941 Pfam:PF00448 Pfam:PF02881 Pfam:PF02978
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003924
GO:GO:0006184 GO:GO:0008312 GO:GO:0006614 SUPFAM:SSF47364
GO:GO:0005786 KO:K03106 Gene3D:1.10.260.30 SUPFAM:SSF47446
HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7 TIGRFAMs:TIGR00959
OMA:GQQVVKI ProtClustDB:PRK10867 RefSeq:YP_168449.1
ProteinModelPortal:Q5LNF9 GeneID:3195205 KEGG:sil:SPO3246
PATRIC:23379937 Uniprot:Q5LNF9
Length = 510
Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 91/330 (27%), Positives = 151/330 (45%)
Query: 6 LGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIK-KIVN--- 61
L +S +++ + E+ + L E+ ALL+ADV + R+ ++ K
Sbjct: 5 LSERLSGVFDRLTKQGALSEEDVKTALREVRVALLEADVSLPVARDFVKAVQDKATGQAV 64
Query: 62 LDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKY 121
+ G +I+ + + L DPGK P+ I+ VGLQG GKTTT K
Sbjct: 65 TKSVTPGQQVVKIVHDTLVDVLRGAEDPGKLKID---NPPAPILMVGLQGGGKTTTTAKL 121
Query: 122 AY-YHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
A +++G K + D +R A DQL + + PV IA +
Sbjct: 122 AKRLKEREGKKVLMASLDVYRPAAMDQLAVLGAQIGVDTLPIVPGQKPVDIAKRAKQQAM 181
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXSV 240
D+ ++DT+GR + L +E+ V P + V+D G +
Sbjct: 182 MGGYDVYMLDTAGRLHIDQVLMQEVEDVRNVVTPRETLLVVDGLTGQVAVEVAEEFDAKI 241
Query: 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300
+ V++T+MDG +GG ALS A T P+ F+G GE MD E F+ + R+LGMGD
Sbjct: 242 GISGVVLTRMDGDGRGGAALSMRAVTGKPIRFVGLGEKMDALETFEPERIAGRILGMGDI 301
Query: 301 SGFMDKIHEVVPMDQQPELLQKLSEGNFTL 330
++K E + M+Q +++++++G F +
Sbjct: 302 VALVEKAQETIEMEQAERMMKRMAKGQFNM 331
>TIGR_CMR|APH_0349 [details] [associations]
symbol:APH_0349 "signal recognition particle protein"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0003924 "GTPase
activity" evidence=ISS] [GO:0005048 "signal sequence binding"
evidence=ISS] [GO:0006617 "SRP-dependent cotranslational protein
targeting to membrane, signal sequence recognition" evidence=ISS]
[GO:0009306 "protein secretion" evidence=ISS] [GO:0048501 "signal
recognition particle, plasma membrane targeting" evidence=ISS]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR004780 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0003924 GO:GO:0006184
EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 eggNOG:COG0541 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7
TIGRFAMs:TIGR00959 OMA:GQQVVKI ProtClustDB:PRK10867 GO:GO:0048500
RefSeq:YP_504956.1 ProteinModelPortal:Q2GKZ5 STRING:Q2GKZ5
GeneID:3930944 KEGG:aph:APH_0349 PATRIC:20949288
BioCyc:APHA212042:GHPM-378-MONOMER Uniprot:Q2GKZ5
Length = 449
Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
Identities = 101/322 (31%), Positives = 155/322 (48%)
Query: 11 SRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIK-KIVNLDDLAAGH 69
S A+Q++S I K + + +IT+ALL ADV +V E N+K KIV D+ G
Sbjct: 10 SSALQRLSGKREISSKDFDLVIEDITQALLDADVNLGVVDEFIENVKSKIVG-GDVVKGV 68
Query: 70 NKRRIIQQAIFNELCKMLDPGKPSFTPKKGK-PSVIMFVGLQGSGKTTTCTKYAYYHQKK 128
+++ + I L ++L K S KGK P+VIM VGLQG GKTT K A +K
Sbjct: 69 LPEQMVIKRIEECLIEVLGNEK-SALDLKGKIPAVIMMVGLQGVGKTTNTVKVALRLKKD 127
Query: 129 GWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLII 188
P + D +R A +QLK A I E P+ IA + + + D+++
Sbjct: 128 SKNPLVASLDVYRPAAREQLKVLADGVGIDSLPIVEEQKPLDIAKRAMREARLKGHDVVL 187
Query: 189 VDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXSVSVGAVIVT 248
+DT+GR + +E++ V + +P ++ V+DS +G + + I T
Sbjct: 188 LDTAGRLHINQDMIDELKCVKKEVSPAEIVLVVDSLMGQDAVTMVRKFNEELGITGTIFT 247
Query: 249 KMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIH 308
+ DG +GG LS P+ F+ TGE ++ + F R+L MGD + ++K
Sbjct: 248 RADGDPRGGAILSMKLVAGCPIKFMSTGEKPEDLDDFYPDRIARRMLNMGDVASLVEKAV 307
Query: 309 EVVPMDQQPELLQKLSEGNFTL 330
E V D EL K +G F L
Sbjct: 308 EAVGKDTINELQAKAKKGKFDL 329
>TIGR_CMR|CHY_1442 [details] [associations]
symbol:CHY_1442 "signal recognition particle-docking
protein FtsY" species:246194 "Carboxydothermus hydrogenoformans
Z-2901" [GO:0003924 "GTPase activity" evidence=ISS] [GO:0005047
"signal recognition particle binding" evidence=ISS] [GO:0009306
"protein secretion" evidence=ISS] HAMAP:MF_00920 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004390 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 PROSITE:PS00300 SMART:SM00382
SMART:SM00962 SMART:SM00963 GO:GO:0005525 GO:GO:0005737
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003924 GO:GO:0031226
eggNOG:COG0552 KO:K03110 GO:GO:0006614 SUPFAM:SSF47364
TIGRFAMs:TIGR00064 RefSeq:YP_360274.1 ProteinModelPortal:Q3AC60
SMR:Q3AC60 STRING:Q3AC60 GeneID:3728659 KEGG:chy:CHY_1442
PATRIC:21276015 HOGENOM:HOG000036277 OMA:NRIPDEL
BioCyc:CHYD246194:GJCN-1441-MONOMER Uniprot:Q3AC60
Length = 303
Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
Identities = 88/292 (30%), Positives = 146/292 (50%)
Query: 9 SISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAG 68
+I I+ + + +DE++ E L EI L++ DV K E+ ++K +
Sbjct: 17 NIVAKIEDVFKKSTVDEELF-EKLEEI---LIEGDVGVKPSLELVEKLRKTARERRITDS 72
Query: 69 HNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKK 128
++++++ E+ K+L+ G P VI+ VG+ G GKTTT K AYY +++
Sbjct: 73 EQLKQVLKE----EILKILEAGDNKLKNVPRTPLVILVVGVNGVGKTTTIGKLAYYFKQQ 128
Query: 129 GWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLII 188
G + L DTFRA A +QL+ K P SDP +A + V+ D++I
Sbjct: 129 GKQVLLAAGDTFRAAAIEQLEIWGNKVGCPVIKQKEGSDPAAVAFDAVKAAIARKIDVLI 188
Query: 189 VDTSGRHKQEAALFEEMRQVSEATN------PDLVIFVMDSSIGXXXXXXXXXXXXSVSV 242
+DT+GR + L EE+R+V PD V+ V+D++ G ++ +
Sbjct: 189 IDTAGRLHTKTNLMEELRKVKRVIERELPGAPDEVLLVLDATTGQNALSQVEYFNKALDL 248
Query: 243 GAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRL 294
+++TK+DG AKGG + ++ + P+ FIG GE MD+ FD + FV L
Sbjct: 249 TGLVLTKLDGTAKGGVIIGIKSSYQIPIKFIGVGEKMDDLRPFDPQEFVEAL 300
>UNIPROTKB|P83749 [details] [associations]
symbol:ftsY "Signal recognition particle receptor FtsY"
species:271 "Thermus aquaticus" [GO:0005515 "protein binding"
evidence=IPI] HAMAP:MF_00920 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004390 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005886 GO:GO:0005737 GO:GO:0006184
GO:GO:0017111 GO:GO:0006614 SUPFAM:SSF47364 TIGRFAMs:TIGR00064
EMBL:AY484668 PDB:1OKK PDB:1RJ9 PDB:2CNW PDB:2IYL PDB:2J7P PDB:2Q9A
PDB:2Q9B PDB:2Q9C PDB:2XKV PDBsum:1OKK PDBsum:1RJ9 PDBsum:2CNW
PDBsum:2IYL PDBsum:2J7P PDBsum:2Q9A PDBsum:2Q9B PDBsum:2Q9C
PDBsum:2XKV ProteinModelPortal:P83749 SMR:P83749 IntAct:P83749
EvolutionaryTrace:P83749 Uniprot:P83749
Length = 304
Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
Identities = 98/287 (34%), Positives = 139/287 (48%)
Query: 28 LNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKML 87
L E L E+ ALL ADV E+ ++ A+G R+ +++A+ +L ML
Sbjct: 28 LEEVLEELEMALLAADVGLSATEEILQEVR--------ASG---RKDLKEAVKEKLVGML 76
Query: 88 DPG-------KPSFTPKKGKP-----SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALV 135
+P K F P+K KP V++ VG+ G GKTTT K Y+Q G K +
Sbjct: 77 EPDERRATLRKLGFNPQKPKPVEPKGRVVLVVGVNGVGKTTTIAKLGRYYQNLG-KKVMF 135
Query: 136 CA-DTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGR 194
CA DTFRA QL + + IP +DP +A + V+ K DL+ VDT+GR
Sbjct: 136 CAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQAMKARGYDLLFVDTAGR 195
Query: 195 HKQEAALFEEMRQVSEAT------NPDLVIFVMDSSIGXXXXXXXXXXXXSVSVGAVIVT 248
+ L EE+++V A P V V+D+ G +V + VIVT
Sbjct: 196 LHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVGLTGVIVT 255
Query: 249 KMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLL 295
K+DG AKGG + V K P+ F+G GE D+ + FD + FV LL
Sbjct: 256 KLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDPEAFVEALL 302
>TAIR|locus:2158103 [details] [associations]
symbol:AT5G66970 species:3702 "Arabidopsis thaliana"
[GO:0005525 "GTP binding" evidence=IEA;ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0005786 "signal recognition particle, endoplasmic
reticulum targeting" evidence=ISS] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA]
[GO:0010267 "production of ta-siRNAs involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0051607 "defense response to
virus" evidence=RCA] InterPro:IPR000897 InterPro:IPR013822
Pfam:PF00448 GO:GO:0005525 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0006614 SUPFAM:SSF47364 eggNOG:COG0541 KO:K03106
EMBL:DQ447113 IPI:IPI00530911 RefSeq:NP_201498.2 UniGene:At.55720
ProteinModelPortal:Q1PDF5 SMR:Q1PDF5 STRING:Q1PDF5
EnsemblPlants:AT5G66970.1 GeneID:836831 KEGG:ath:AT5G66970
TAIR:At5g66970 HOGENOM:HOG000124785 InParanoid:Q1PDF5 OMA:YARYHRK
PhylomeDB:Q1PDF5 ProtClustDB:CLSN2702272 ArrayExpress:Q1PDF5
Genevestigator:Q1PDF5 Uniprot:Q1PDF5
Length = 175
Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 72/163 (44%), Positives = 101/163 (61%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
M L ++ G I R+ ++M+ + +D L CLNEIT ALL AD+ V E++T +I+
Sbjct: 1 MALEEVRGRIGRSFEEMNKTSNMDCTKLKSCLNEITCALLDADIPRLAVDEIETKSLEII 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
NL A K +I + EL LDPGK + K +PS++MF+GL+G KT TC K
Sbjct: 61 NLPK--APKKKGALIYMMMLQELSSKLDPGKSALIRGKLEPSIVMFIGLRGVDKTKTCAK 118
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSY 163
YA YH+KKG++PALVCADTF+ AF +L + A K ++P Y Y
Sbjct: 119 YARYHRKKGFRPALVCADTFKFDAFVRLNK-AAKDEVPVYARY 160
>TIGR_CMR|NSE_0540 [details] [associations]
symbol:NSE_0540 "signal recognition particle protein"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0003924
"GTPase activity" evidence=ISS] [GO:0006617 "SRP-dependent
cotranslational protein targeting to membrane, signal sequence
recognition" evidence=ISS] [GO:0048501 "signal recognition
particle, plasma membrane targeting" evidence=ISS]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125
InterPro:IPR004780 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
Pfam:PF02978 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0003924 GO:GO:0006184 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0008312 GO:GO:0006614
SUPFAM:SSF47364 eggNOG:COG0541 KO:K03106 Gene3D:1.10.260.30
SUPFAM:SSF47446 HOGENOM:HOG000036164 PANTHER:PTHR11564:SF7
OMA:GQQVVKI ProtClustDB:PRK10867 GO:GO:0048500 RefSeq:YP_506423.1
ProteinModelPortal:Q2GDM3 STRING:Q2GDM3 GeneID:3931977
KEGG:nse:NSE_0540 PATRIC:22681129
BioCyc:NSEN222891:GHFU-559-MONOMER Uniprot:Q2GDM3
Length = 449
Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
Identities = 87/327 (26%), Positives = 154/327 (47%)
Query: 6 LGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDL 65
L I A+ + N +I EK ++ + ++ L+ADV + ++ N+++ V
Sbjct: 5 LSKKIGGALDGIKNRGVITEKEFDDFVRKLRLTFLEADVSLPVTKQFIANVRESVIGKSR 64
Query: 66 AAGHNKRRIIQQAIFNELCKMLDPGKPSFT-PKKGKPSVIMFVGLQGSGKTTTCTKYAYY 124
G + +I + EL K+L F PK GK ++MFVGLQG GKTTT K A
Sbjct: 65 VKGISTPAVIGSVVKEELVKILGGESQKFEFPKFGK-QILMFVGLQGVGKTTTAAKLALL 123
Query: 125 HQKKGWKPALVCA-DTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK-- 181
+KK K L+ + D +R A QL+ A + + D I + ++ F
Sbjct: 124 IRKKFKKNILLSSVDIYRPAARKQLEILAKQIDVDTVPIVEGEDVDAIVKKTLDLFNNSH 183
Query: 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXSVS 241
E D+++VDT+GR + ++ L EE++ + P + V+D+ +G +
Sbjct: 184 EGYDVLMVDTAGRSQIDSVLMEELKVIKNRLQPSEIFQVLDAMMGQDSLNVARTFHSEIG 243
Query: 242 VGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWS 301
VIV+++D A+ G LS + P+ F G GE +++ E F + R++G GD +
Sbjct: 244 TTGVIVSRLDSDARVGSVLSVRQSVGLPIRFCGAGERVNDLEEFHPERMAGRIMGAGDIA 303
Query: 302 GFMDKIHEVVPMDQQPELLQKLSEGNF 328
++ V ++ + +++ G F
Sbjct: 304 SLVEYASSEVGEERIGSIRKRIEAGKF 330
>TIGR_CMR|SPO_1339 [details] [associations]
symbol:SPO_1339 "signal recognition particle-docking
protein FtsY" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003924
"GTPase activity" evidence=ISS] [GO:0009306 "protein secretion"
evidence=ISS] [GO:0048501 "signal recognition particle, plasma
membrane targeting" evidence=ISS] HAMAP:MF_00920 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004390 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005737 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0003924 GO:GO:0031226 HOGENOM:HOG000036278 KO:K03110
GO:GO:0006614 SUPFAM:SSF47364 TIGRFAMs:TIGR00064 OMA:ADMGVET
RefSeq:YP_166581.1 ProteinModelPortal:Q5LTS4 SMR:Q5LTS4
GeneID:3192959 KEGG:sil:SPO1339 PATRIC:23375989 Uniprot:Q5LTS4
Length = 390
Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 82/298 (27%), Positives = 147/298 (49%)
Query: 8 GSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAA 67
G + R + AT++ + ++ L ++ L+ AD+ + T ++ N+ +
Sbjct: 97 GLLGRLFARPGGATVVRRTLDDDMLEQLEELLIAADMG------VDTALRVTANMAEGRI 150
Query: 68 GHN-KRRIIQQAIFNELCKMLDP-GKPS-FTPKKGKPSVIMFVGLQGSGKTTTCTKYAYY 124
G + I+ + E+ ++++P +P PK+ P V++ VG+ GSGKTTT K A
Sbjct: 151 GRKLSTQEIKALLAQEITRIMEPVARPMPLYPKR--PQVVLVVGVNGSGKTTTIGKLASQ 208
Query: 125 HQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENC 184
+ G K + DTFRA A +QL+ +A +P + SDP +A + + +++
Sbjct: 209 FKAAGKKVVIAAGDTFRAAAVEQLQVWGDRAGVPVLTAPEGSDPASLAFDAMTRAQEDGA 268
Query: 185 DLIIVDTSGRHKQEAALFEEMRQV------SEATNPDLVIFVMDSSIGXXXXXXXXXXXX 238
DL+++DT+GR + A L EE+ ++ + T P + V+D++ G
Sbjct: 269 DLLLIDTAGRLQNRADLMEELAKIVRVIRKKDDTAPHNTLLVLDATTGQNAISQVETFQK 328
Query: 239 SVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLG 296
V +++TK+DG AKGG +S P+ IG GE +D+ FD + F + L G
Sbjct: 329 LADVSGLVMTKLDGTAKGGILVSLADRFGLPIHAIGVGEQIDDLAPFDPEDFAAALTG 386
>TIGR_CMR|NSE_0545 [details] [associations]
symbol:NSE_0545 "signal recognition particle-docking
protein FtsY" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0003924 "GTPase activity" evidence=ISS] [GO:0009306 "protein
secretion" evidence=ISS] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004390 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0006184 GO:GO:0017111 EMBL:CP000237 GenomeReviews:CP000237_GR
eggNOG:COG0552 HOGENOM:HOG000036278 KO:K03110 ProtClustDB:PRK10416
GO:GO:0006614 SUPFAM:SSF47364 TIGRFAMs:TIGR00064 RefSeq:YP_506428.1
ProteinModelPortal:Q2GDL8 STRING:Q2GDL8 GeneID:3931766
KEGG:nse:NSE_0545 PATRIC:22681139 OMA:RIISQNQ
BioCyc:NSEN222891:GHFU-564-MONOMER Uniprot:Q2GDL8
Length = 309
Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
Identities = 90/307 (29%), Positives = 153/307 (49%)
Query: 2 VLAQLGGSISRAIQQMSNAT---IIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKK 58
V + + SI+++ +S+ EK+ + ++ L+ AD+ + + +KK
Sbjct: 5 VFSSIRNSITKSRDYLSSGIDNIFAKEKISESTIEQLEELLISADIGPTVTERIIKTVKK 64
Query: 59 IVNLDDLAAGHNKRRIIQQAIFNELCKMLDP-GKPSFTPKKGKPSVIMFVGLQGSGKTTT 117
I D G + ++ + E+ K+LDP K P+ G P VI+F G+ G+GKTTT
Sbjct: 65 IKVKD----GESLEQV-KSITREEMKKVLDPTSKKLIFPQTG-PQVIVFCGVNGNGKTTT 118
Query: 118 CTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE 177
K AY ++ + D FRA A +QL+ A +A F+ S T + A + +E
Sbjct: 119 IGKLAYKFIQENKTVMIAACDLFRAAAIEQLRFWAERASATFFSSETSKNASGTAYKALE 178
Query: 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATN------PDLVIFVMDSSIGXXXXX 231
++ D++IVDTSGR + L EE++++ + P+ VI +D+S G
Sbjct: 179 KALEDKVDVLIVDTSGRLHTQNDLMEELKKICRVLSKLMPSAPNEVILALDASTGQNALN 238
Query: 232 XXXXXXXSVSVGAVIVTKMDGHAKGGGALSAVAATKSP---VIFIGTGEHMDEFEVFDVK 288
+V++ ++VTK+DG +KGG + A+A + P + F+GTGE + + E F
Sbjct: 239 QVQVFKDAVNLTGLVVTKLDGTSKGG-VIVAIAE-RYPNLGIYFVGTGEKITDLEEFSPS 296
Query: 289 PFVSRLL 295
FV LL
Sbjct: 297 EFVDALL 303
>TIGR_CMR|BA_3985 [details] [associations]
symbol:BA_3985 "signal recognition particle-docking protein
FtsY" species:198094 "Bacillus anthracis str. Ames" [GO:0003924
"GTPase activity" evidence=ISS] [GO:0005047 "signal recognition
particle binding" evidence=ISS] [GO:0009306 "protein secretion"
evidence=ISS] HAMAP:MF_00920 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004390 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005737 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003924 GO:GO:0031226 KO:K03110
ProtClustDB:PRK10416 GO:GO:0006614 SUPFAM:SSF47364
TIGRFAMs:TIGR00064 HSSP:P83749 HOGENOM:HOG000036277
RefSeq:NP_846227.1 RefSeq:YP_020624.1 RefSeq:YP_029949.1
ProteinModelPortal:Q81WJ0 SMR:Q81WJ0 DNASU:1086789
EnsemblBacteria:EBBACT00000008913 EnsemblBacteria:EBBACT00000016260
EnsemblBacteria:EBBACT00000019469 GeneID:1086789 GeneID:2817443
GeneID:2848220 KEGG:ban:BA_3985 KEGG:bar:GBAA_3985 KEGG:bat:BAS3698
OMA:LVYRYRK BioCyc:BANT260799:GJAJ-3756-MONOMER
BioCyc:BANT261594:GJ7F-3873-MONOMER Uniprot:Q81WJ0
Length = 329
Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
Identities = 82/276 (29%), Positives = 136/276 (49%)
Query: 26 KVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCK 85
KV + E+ L+ ADV V E+ +K+ V ++ + R + QA+ +E
Sbjct: 46 KVDEDFFEELEEILIGADVGVSTVMELIDQLKEEVQRRNI---QDPREV--QAVISEKLI 100
Query: 86 MLDPGKPSFTPK----KGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141
+ G FT + K +V++FVG+ G GKTTT K A+ + +G L DTFR
Sbjct: 101 EIYKGDSDFTNEVNMQKDGLTVVLFVGVNGVGKTTTIGKMAHKFKSEGKSVLLAAGDTFR 160
Query: 142 AGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAAL 201
AGA +QL+ + + + SDP + + V+ K N D+++ DT+GR + + L
Sbjct: 161 AGAIEQLEVWGDRVGVEVIKQGSGSDPAAVMYDAVQAAKARNVDVLLCDTAGRLQNKVNL 220
Query: 202 FEEMRQVSEATN------PDLVIFVMDSSIGXXXXXXXXXXXXSVSVGAVIVTKMDGHAK 255
+E+ +V P V+ V+D++ G + +V +++TK+DG AK
Sbjct: 221 MKELEKVKRVIEREVPGAPHEVLLVIDATTGQNGLSQAKTFREATNVTGIVLTKLDGTAK 280
Query: 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFV 291
GG L+ PV F+G GE MD+ + FD + +V
Sbjct: 281 GGIVLAIRNEMDVPVKFVGLGEQMDDLQQFDPEQYV 316
>TIGR_CMR|SO_4586 [details] [associations]
symbol:SO_4586 "signal recognition particle-docking protein
FtsY" species:211586 "Shewanella oneidensis MR-1" [GO:0003924
"GTPase activity" evidence=ISS] [GO:0005047 "signal recognition
particle binding" evidence=ISS] [GO:0009306 "protein secretion"
evidence=ISS] HAMAP:MF_00920 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004390 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005737 GO:GO:0003924 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0031226 HOGENOM:HOG000036278
KO:K03110 GO:GO:0006614 SUPFAM:SSF47364 TIGRFAMs:TIGR00064
HSSP:P10121 RefSeq:NP_720102.1 ProteinModelPortal:Q8E8S5 SMR:Q8E8S5
GeneID:1172171 KEGG:son:SO_4586 PATRIC:23528839 OMA:PDNANGP
Uniprot:Q8E8S5
Length = 510
Score = 315 (115.9 bits), Expect = 7.7e-28, P = 7.7e-28
Identities = 82/279 (29%), Positives = 136/279 (48%)
Query: 25 EKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKR--RIIQQAIFNE 82
+K+ +E E+ LL ADV ++T + I +L + A+ + + + +E
Sbjct: 230 KKIDDELFEELEEQLLIADVG------VETTGRLIKSLTEHASRKQLKDAEALYDLLRDE 283
Query: 83 LCKMLDPGKPSFTPKKGK-PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141
+ K LDP P+ P VI+ VG+ G GKTTT K A +Q++G L DTFR
Sbjct: 284 MQKTLDPVAIPLVPENANGPFVILMVGVNGVGKTTTIGKLAKQYQRQGKSVMLAAGDTFR 343
Query: 142 AGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAAL 201
A A +QL+ + IP +T +D + + ++ K D++I DT+GR + ++ L
Sbjct: 344 AAAVEQLQVWGQRNNIPVVAQHTGADSASVLFDALQAAKARKIDVLIADTAGRLQNKSHL 403
Query: 202 FEEMRQVSEATN------PDLVIFVMDSSIGXXXXXXXXXXXXSVSVGAVIVTKMDGHAK 255
EE+++V P V+ +D+S G +V V + ++K+DG AK
Sbjct: 404 MEELKKVVRVMKKLDPEAPHEVMLTLDASTGQNAISQAQLFQEAVGVTGMTISKLDGTAK 463
Query: 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRL 294
GG + K P+ +IG GE +D+ F+ K F+ L
Sbjct: 464 GGVVFAIADKFKIPLRYIGVGEQIDDLRTFNSKEFIDAL 502
>TIGR_CMR|CBU_1903 [details] [associations]
symbol:CBU_1903 "signal recognition particle-docking
protein FtsY" species:227377 "Coxiella burnetii RSA 493"
[GO:0003924 "GTPase activity" evidence=ISS] [GO:0005047 "signal
recognition particle binding" evidence=ISS] [GO:0009306 "protein
secretion" evidence=ISS] HAMAP:MF_00920 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004390 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 PROSITE:PS00300 SMART:SM00382
SMART:SM00962 SMART:SM00963 GO:GO:0005525 GO:GO:0005737
GO:GO:0051301 GO:GO:0003924 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0031226 HOGENOM:HOG000036278 KO:K03110 ProtClustDB:PRK10416
GO:GO:0006614 SUPFAM:SSF47364 TIGRFAMs:TIGR00064 OMA:NRIPDEL
RefSeq:NP_820880.1 HSSP:P10121 ProteinModelPortal:Q83AI3 SMR:Q83AI3
PRIDE:Q83AI3 GeneID:1209816 KEGG:cbu:CBU_1903 PATRIC:17932545
BioCyc:CBUR227377:GJ7S-1878-MONOMER Uniprot:Q83AI3
Length = 324
Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
Identities = 80/291 (27%), Positives = 143/291 (49%)
Query: 11 SRAIQQMSNATIIDEKVLN-ECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGH 69
SR +SN ++ +K ++ L E+ LL AD+ + + + N+ + V L+
Sbjct: 37 SRLTDGLSNL-VLGKKTIDASLLEELEMILLSADIGIEATQSILNNLSQQVARKSLS--- 92
Query: 70 NKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKG 129
+ + +I A+ EL +L+P + P VI+ VG+ G GKTTT K A+++Q +
Sbjct: 93 DPKALID-ALKIELLNILEPCQKHLEIS-ASPFVILTVGVNGVGKTTTIAKLAHFYQSQK 150
Query: 130 WKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIV 189
+ L DTFRA A +QL+ + P +D + + +E + DL+I
Sbjct: 151 KRVMLAAGDTFRAAAIEQLQTWGQRNNAPVIAQQPGADSASVIYDAMEAATARHYDLLIA 210
Query: 190 DTSGRHKQEAALFEEM---RQVSEATNPDL---VIFVMDSSIGXXXXXXXXXXXXSVSVG 243
DT+GR ++ L +E+ ++V + NPD + V+D+ G + +
Sbjct: 211 DTAGRLHTQSHLMDELAKIKRVMKKINPDAPHETLLVLDAGTGQNAINQAEQFHEHIGLT 270
Query: 244 AVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRL 294
+ +TK+DG AKGG + + P+ FIG GE +++ + F+ K F++ L
Sbjct: 271 GIAITKLDGTAKGGVIFAIAKKMQLPIRFIGMGEKIEDLKPFNAKEFIAAL 321
>UNIPROTKB|P10121 [details] [associations]
symbol:ftsY "SRP receptor" species:83333 "Escherichia coli
K-12" [GO:0006184 "GTP catabolic process" evidence=IEA;IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0031226 "intrinsic to
plasma membrane" evidence=IDA] [GO:0003924 "GTPase activity"
evidence=IDA] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=IEA;IDA] [GO:0005525 "GTP binding"
evidence=IEA;IDA] HAMAP:MF_00920 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004390 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 PROSITE:PS00300 SMART:SM00382
SMART:SM00962 SMART:SM00963 GO:GO:0005525 GO:GO:0005829 EMBL:U00039
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003924 GO:GO:0031226 EMBL:X04398
PIR:S03130 RefSeq:NP_417921.1 RefSeq:YP_491970.1 PDB:1FTS PDB:2QY9
PDB:2XXA PDB:2YHS PDBsum:1FTS PDBsum:2QY9 PDBsum:2XXA PDBsum:2YHS
ProteinModelPortal:P10121 SMR:P10121 DIP:DIP-9709N IntAct:P10121
MINT:MINT-1247716 TCDB:3.A.5.1.1 PRIDE:P10121
EnsemblBacteria:EBESCT00000004496 EnsemblBacteria:EBESCT00000016891
GeneID:12933505 GeneID:947978 KEGG:ecj:Y75_p3714 KEGG:eco:b3464
PATRIC:32122372 EchoBASE:EB0342 EcoGene:EG10346 eggNOG:COG0552
HOGENOM:HOG000036278 KO:K03110 OMA:AETNAEY ProtClustDB:PRK10416
BioCyc:EcoCyc:EG10346-MONOMER BioCyc:ECOL316407:JW3429-MONOMER
EvolutionaryTrace:P10121 Genevestigator:P10121 GO:GO:0006614
SUPFAM:SSF47364 TIGRFAMs:TIGR00064 Uniprot:P10121
Length = 497
Score = 305 (112.4 bits), Expect = 8.8e-27, P = 8.8e-27
Identities = 78/282 (27%), Positives = 135/282 (47%)
Query: 25 EKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELC 84
+K+ ++ E+ LL ADV + R++ TN+ + + L ++++ + L
Sbjct: 221 KKIDDDLFEELEEQLLIADVGVETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILA 280
Query: 85 KMLDPGKPSFTPKKGK-PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG 143
K+ +P +GK P VI+ VG+ G GKTTT K A +++G L DTFRA
Sbjct: 281 KVDEP-----LNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAA 335
Query: 144 AFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFE 203
A +QL+ + IP +T +D + + ++ K N D++I DT+GR + ++ L E
Sbjct: 336 AVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLME 395
Query: 204 EMRQVSEATN------PDLVIFVMDSSIGXXXXXXXXXXXXSVSVGAVIVTKMDGHAKGG 257
E++++ P V+ +D+S G +V + + +TK+DG AKGG
Sbjct: 396 ELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGG 455
Query: 258 GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGD 299
S P+ +IG GE +++ F F+ L D
Sbjct: 456 VIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALFARED 497
>TIGR_CMR|VC_0147 [details] [associations]
symbol:VC_0147 "signal recognition particle-docking protein
FtsY" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003924
"GTPase activity" evidence=ISS] [GO:0005047 "signal recognition
particle binding" evidence=ISS] [GO:0009306 "protein secretion"
evidence=ISS] HAMAP:MF_00920 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004390 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005737 GO:GO:0051301 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003924 GO:GO:0031226 KO:K03110
ProtClustDB:PRK10416 GO:GO:0006614 SUPFAM:SSF47364
TIGRFAMs:TIGR00064 OMA:VEAVAIQ HSSP:P10121 PIR:B82360
RefSeq:NP_229805.1 ProteinModelPortal:Q9KVJ6 SMR:Q9KVJ6
DNASU:2614855 GeneID:2614855 KEGG:vch:VC0147 PATRIC:20079332
Uniprot:Q9KVJ6
Length = 391
Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
Identities = 79/279 (28%), Positives = 130/279 (46%)
Query: 25 EKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKR--RIIQQAIFNE 82
+K+ ++ E+ LL ADV M T K I NL A+ R + + E
Sbjct: 114 KKIDDDLFEELEEQLLIADVG------MDTTSKIIANLTARASRQQLRDGEALYGLLKEE 167
Query: 83 LCKMLDP-GKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141
+ ++L +P + KP VI+ VG+ G GKTTT K A Q +G K L DTFR
Sbjct: 168 MAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGKLAKQFQAQGKKVMLAAGDTFR 227
Query: 142 AGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAAL 201
A A +QL+ + ++P +T +D + + +E K D++I DT+GR + ++ L
Sbjct: 228 AAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAKARGIDVVIADTAGRLQNKSNL 287
Query: 202 FEEMRQVSEATN------PDLVIFVMDSSIGXXXXXXXXXXXXSVSVGAVIVTKMDGHAK 255
EE+R++ P ++ +D+ G + + +TK+DG AK
Sbjct: 288 MEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAKLFSDVAPITGITLTKLDGTAK 347
Query: 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRL 294
GG + + P+ +IG GE +D+ F + F+ L
Sbjct: 348 GGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEFIDAL 386
>TIGR_CMR|CPS_0157 [details] [associations]
symbol:CPS_0157 "signal recognition particle-docking
protein FtsY" species:167879 "Colwellia psychrerythraea 34H"
[GO:0000910 "cytokinesis" evidence=ISS] [GO:0003924 "GTPase
activity" evidence=ISS] HAMAP:MF_00920 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004390 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 PROSITE:PS00300 SMART:SM00382
SMART:SM00962 SMART:SM00963 GO:GO:0005525 GO:GO:0005737
GO:GO:0003924 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0031226
eggNOG:COG0552 HOGENOM:HOG000036278 KO:K03110 GO:GO:0006614
SUPFAM:SSF47364 TIGRFAMs:TIGR00064 RefSeq:YP_266925.1
ProteinModelPortal:Q48AI8 SMR:Q48AI8 STRING:Q48AI8 GeneID:3519649
KEGG:cps:CPS_0157 PATRIC:21463731 OMA:VEAVAIQ
BioCyc:CPSY167879:GI48-260-MONOMER Uniprot:Q48AI8
Length = 481
Score = 303 (111.7 bits), Expect = 1.2e-26, P = 1.2e-26
Identities = 89/306 (29%), Positives = 149/306 (48%)
Query: 4 AQLGGSISRAIQQMSNATIID----EKVLNECLNEITRALLQADVQFKLVREMQTNIKKI 59
A+L +S+ Q + +ID +++ ++ E+ LL ADV + ++ ++ +
Sbjct: 182 ARLKQGLSKTRQNLGGG-LIDLFRGKQIDDDLFEELETHLLLADVGVETTMKIIESLTQS 240
Query: 60 VN---LDDLAAGHNKRRIIQQAIFNELCKML-DPGKPSFTPKKGKPSVIMFVGLQGSGKT 115
N L D +A ++ +I EL K++ D +P P+ P VI+ VG+ G GKT
Sbjct: 241 ANRKQLKDASALYDLLKI-------ELKKVIEDVSQPLVIPEDDGPFVILMVGVNGVGKT 293
Query: 116 TTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEG 175
TT K A Q +G L DTFRA A +QL+ + IP +T +D + +
Sbjct: 294 TTIGKLAKQFQAQGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVIAQHTGADSASVIFDA 353
Query: 176 VETFKKENCDLIIVDTSGRHKQEAALFEEMRQVS------EATNPDLVIFVMDSSIGXXX 229
+ K D+II DT+GR + +A L EE+++V + P V+ +D+ G
Sbjct: 354 ISAAKARKVDIIIADTAGRLQNKAHLMEELKKVVRVMKKLDVNAPHEVMLTLDAGTGQNA 413
Query: 230 XXXXXXXXXSVSVGAVIVTKMDGHAKGGGALSAVAATKS-PVIFIGTGEHMDEFEVFDVK 288
+V + + +TK+DG AKGG + AVA S P+ ++G GE +D+ F+
Sbjct: 414 LSQTKLFDEAVGLTGLTITKLDGTAKGG-VIFAVADKHSIPIRYLGVGEGIDDLRPFNSD 472
Query: 289 PFVSRL 294
F+ L
Sbjct: 473 DFIDAL 478
>UNIPROTKB|P66842 [details] [associations]
symbol:ftsY "Signal recognition particle receptor FtsY"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
HAMAP:MF_00920 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004390 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005886 GO:GO:0005737 GO:GO:0005618
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
GO:GO:0006184 EMBL:BX842581 GO:GO:0017111 eggNOG:COG0552
HOGENOM:HOG000036278 KO:K03110 ProtClustDB:PRK10416 GO:GO:0006614
SUPFAM:SSF47364 TIGRFAMs:TIGR00064 PIR:A70748 RefSeq:NP_217437.1
RefSeq:NP_337502.1 RefSeq:YP_006516374.1 ProteinModelPortal:P66842
SMR:P66842 TCDB:3.A.5.2.2 PhosSite:P12071727 PRIDE:P66842
EnsemblBacteria:EBMYCT00000000121 EnsemblBacteria:EBMYCT00000072194
GeneID:13317714 GeneID:887205 GeneID:925285 KEGG:mtc:MT2989
KEGG:mtu:Rv2921c KEGG:mtv:RVBD_2921c PATRIC:18128342
TubercuList:Rv2921c OMA:FIGIGEN Uniprot:P66842
Length = 422
Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
Identities = 82/298 (27%), Positives = 138/298 (46%)
Query: 3 LAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNL 62
LA+ ++ R + + +DE + ++ LL AD+ + + ++ +
Sbjct: 130 LARSQNALGRGLLGLIGGGDLDE----DSWQDVEDTLLVADLGPAATASVVSQLRSRLAS 185
Query: 63 DDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYA 122
++ + R +++ + NEL +D + P G PSV++ VG+ G+GKTTT K A
Sbjct: 186 GNVRTEADARAVLRDVLINELQPGMDRSIRAL-PHAGHPSVLLVVGVNGTGKTTTVGKLA 244
Query: 123 YYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182
G + L ADTFRA A DQL+ A + +DP +A + V+
Sbjct: 245 RVLVADGRRVVLGAADTFRAAAADQLQTWAARVGAAVVRGPEGADPASVAFDAVDKGIAA 304
Query: 183 NCDLIIVDTSGRHKQEAALFEEM----RQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXX 238
D++++DT+GR + L +E+ R V+ + D V+ V+D++IG
Sbjct: 305 GADVVLIDTAGRLHTKVGLMDELDKVKRVVTRRASVDEVLLVLDATIGQNGLAQARVFAE 364
Query: 239 SVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLG 296
V + ++TK+DG AKGG PV +G GE D+ F+ FV LLG
Sbjct: 365 VVDISGAVLTKLDGTAKGGIVFRVQQELGVPVKLVGLGEGPDDLAPFEPAAFVDALLG 422
>TIGR_CMR|CJE_1340 [details] [associations]
symbol:CJE_1340 "signal recognition particle-docking
protein FtsY" species:195099 "Campylobacter jejuni RM1221"
[GO:0003924 "GTPase activity" evidence=ISS] [GO:0005047 "signal
recognition particle binding" evidence=ISS] [GO:0009306 "protein
secretion" evidence=ISS] HAMAP:MF_00920 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004390 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 PROSITE:PS00300 SMART:SM00382
SMART:SM00962 GO:GO:0005525 GO:GO:0005737 GO:GO:0003924
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0031226
eggNOG:COG0552 KO:K03110 ProtClustDB:PRK10416 GO:GO:0006614
SUPFAM:SSF47364 TIGRFAMs:TIGR00064 HOGENOM:HOG000036277
RefSeq:YP_179327.1 ProteinModelPortal:Q5HTQ8 STRING:Q5HTQ8
GeneID:3231847 KEGG:cjr:CJE1340 PATRIC:20044480 OMA:DLVTPKQ
BioCyc:CJEJ195099:GJC0-1366-MONOMER Uniprot:Q5HTQ8
Length = 288
Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
Identities = 81/280 (28%), Positives = 137/280 (48%)
Query: 24 DEKVLNECLNEITRALLQADVQFKLVREMQTNI--KKIVNLDDLAAGHNKRRIIQQAIFN 81
++K+ + L EI LL+ADV +++V E+ + + V +DL +R++
Sbjct: 23 NKKITKDLLEEI---LLEADVSYEIVEEIIYYLPPQNEVKKEDL------KRVMGSYFLY 73
Query: 82 ELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141
E K + + KP V + +G+ G+GKTT+ K AY ++ + K L DTFR
Sbjct: 74 EK-------KET---NQEKPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFR 123
Query: 142 AGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAAL 201
AGA +QLK A K + + DP +A + + K ++ D +I+DT+GR + + L
Sbjct: 124 AGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISKAKAKDFDRVIIDTAGRLQNQKNL 183
Query: 202 FEEMRQVSEATN------PDLVIFVMDSSIGXXXXXXXXXXXXSVSVGAVIVTKMDGHAK 255
E+ ++ +N P I V+D + G V + VI+TK+DG AK
Sbjct: 184 AHELEKIVRISNKALEGAPHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDGTAK 243
Query: 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLL 295
GG S + P+ ++G GE M + + F+ ++ LL
Sbjct: 244 GGALFSIARELELPIFYVGVGEQMTDLQEFNANAYLDTLL 283
>TAIR|locus:2118701 [details] [associations]
symbol:AT4G30600 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003924 "GTPase
activity" evidence=IEA] [GO:0005047 "signal recognition particle
binding" evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005786 "signal
recognition particle, endoplasmic reticulum targeting"
evidence=ISS] [GO:0006184 "GTP catabolic process" evidence=IEA]
[GO:0006605 "protein targeting" evidence=ISS] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IEA] [GO:0006886 "intracellular protein transport"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IDA]
[GO:0006623 "protein targeting to vacuole" evidence=RCA]
[GO:0006944 "cellular membrane fusion" evidence=RCA] [GO:0016192
"vesicle-mediated transport" evidence=RCA] [GO:0048193 "Golgi
vesicle transport" evidence=RCA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 GO:GO:0005525
GO:GO:0005783 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003924
EMBL:AL161577 SUPFAM:SSF64356 eggNOG:COG0552 GO:GO:0006614
SUPFAM:SSF47364 KO:K13431 GO:GO:0005785 GO:GO:0005047
HOGENOM:HOG000201671 OMA:LILWSSC EMBL:AY065066 EMBL:AY133612
IPI:IPI00534083 PIR:A85358 RefSeq:NP_194789.1 UniGene:At.4581
HSSP:P83749 ProteinModelPortal:Q9M0A0 SMR:Q9M0A0 STRING:Q9M0A0
PaxDb:Q9M0A0 PRIDE:Q9M0A0 EnsemblPlants:AT4G30600.1 GeneID:829183
KEGG:ath:AT4G30600 TAIR:At4g30600 InParanoid:Q9M0A0
PhylomeDB:Q9M0A0 ProtClustDB:CLSN2685629 ArrayExpress:Q9M0A0
Genevestigator:Q9M0A0 Uniprot:Q9M0A0
Length = 634
Score = 298 (110.0 bits), Expect = 1.3e-25, P = 1.3e-25
Identities = 79/310 (25%), Positives = 147/310 (47%)
Query: 4 AQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLD 63
A+ G S Q ++ ++ L L + L+ +V ++ ++ +++ +
Sbjct: 324 AKKKGWFSSVFQSITGKANLERTDLGPALKALKERLMTKNVAEEIAEKLCESVEASLEGK 383
Query: 64 DLAAGHNKRRIIQQAIFNELCKMLDPGKP-------SFTPKKGKPSVIMFVGLQGSGKTT 116
L++ +Q A+ + L ++L P + ++ KP V++FVG+ G GK+T
Sbjct: 384 KLSSFTRISSTVQAAMEDALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKST 443
Query: 117 TCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGV 176
K AY+ Q+ + DTFR+GA +QL+ +A + +IP + E DP +A E +
Sbjct: 444 NLAKVAYWLQQHKVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAVVAKEAI 503
Query: 177 ETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXX 236
+ + D+++VDT+GR + L + ++ PDLV+FV ++ +G
Sbjct: 504 QEATRNGSDVVLVDTAGRMQDNEPLMRALSKLINLNQPDLVLFVGEALVGNDAVDQLSKF 563
Query: 237 XXSVS----------VGAVIVTKMDG-HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVF 285
+S + +++TK D K G ALS V + SPV+F+G G+ + +
Sbjct: 564 NQKLSDLSTSGNPRLIDGILLTKFDTIDDKVGAALSMVYISGSPVMFVGCGQSYTDLKKL 623
Query: 286 DVKPFVSRLL 295
+VK V LL
Sbjct: 624 NVKAIVKTLL 633
>TIGR_CMR|GSU_1132 [details] [associations]
symbol:GSU_1132 "signal recognition particle-docking
protein FtsY" species:243231 "Geobacter sulfurreducens PCA"
[GO:0003924 "GTPase activity" evidence=ISS] [GO:0005047 "signal
recognition particle binding" evidence=ISS] [GO:0009306 "protein
secretion" evidence=ISS] HAMAP:MF_00920 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004390 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 PROSITE:PS00300 SMART:SM00382
SMART:SM00962 SMART:SM00963 GO:GO:0005525 GO:GO:0005737
GO:GO:0003924 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0031226
HOGENOM:HOG000036278 KO:K03110 ProtClustDB:PRK10416 GO:GO:0006614
SUPFAM:SSF47364 TIGRFAMs:TIGR00064 RefSeq:NP_952185.1
ProteinModelPortal:Q74E32 SMR:Q74E32 GeneID:2686843
KEGG:gsu:GSU1132 PATRIC:22025026 OMA:HLMAELE
BioCyc:GSUL243231:GH27-1142-MONOMER Uniprot:Q74E32
Length = 350
Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
Identities = 76/280 (27%), Positives = 133/280 (47%)
Query: 22 IIDEKVLN-ECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIF 80
++ +K ++ + L E+ L+ AD+ + E+ +++ ++ ++L G R +++ I
Sbjct: 73 VLGKKEIDADTLEELEEILITADLGVQTTVELIRGLEQRLSRNELKDGEALREALKEDIH 132
Query: 81 NELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140
L + D + T P VIM +G+ G GKTTT K A +G K L DTF
Sbjct: 133 GRLAR--DAHQLDVTG--ASPFVIMVIGVNGVGKTTTIGKLAARFTAQGKKVILAAGDTF 188
Query: 141 RAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAA 200
RA A +QL+ + + +DP + + ++ D++IVDT+GR +
Sbjct: 189 RAAAAEQLQIWGERTGVDVIRHKEGADPSAVVFDSIKAAVARGADILIVDTAGRLHTKVN 248
Query: 201 LFEEMRQVSEATN------PDLVIFVMDSSIGXXXXXXXXXXXXSVSVGAVIVTKMDGHA 254
L EE+++V + P + V+D++ G + V + +TK+DG A
Sbjct: 249 LMEELKKVRRIMSREIPGAPHETLLVLDAATGQNALSQAKLFKEAAQVTGIALTKLDGTA 308
Query: 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRL 294
KGG ++ + PV +IG GE +D+ FD FV L
Sbjct: 309 KGGIVVAICNEFRIPVRYIGVGEGIDDLRDFDPSQFVEAL 348
>TIGR_CMR|ECH_1111 [details] [associations]
symbol:ECH_1111 "signal recognition particle-docking
protein FtsY" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0003924 "GTPase activity" evidence=ISS] [GO:0005047 "signal
recognition particle binding" evidence=ISS] [GO:0009306 "protein
secretion" evidence=ISS] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004390 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006184 GO:GO:0017111
eggNOG:COG0552 HOGENOM:HOG000036278 KO:K03110 ProtClustDB:PRK10416
GO:GO:0006614 SUPFAM:SSF47364 TIGRFAMs:TIGR00064 RefSeq:YP_507895.1
ProteinModelPortal:Q2GF88 STRING:Q2GF88 GeneID:3927733
KEGG:ech:ECH_1111 PATRIC:20577558 OMA:ADMGVET
BioCyc:ECHA205920:GJNR-1114-MONOMER Uniprot:Q2GF88
Length = 310
Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 82/279 (29%), Positives = 129/279 (46%)
Query: 25 EKVLNECLNEITRALLQADVQFKLVREMQTNIK--KIVNLDDLAAGHNKRRIIQQAIFNE 82
+KV E L E+ L+ ADV + + + K +DD + ++ + ++I N
Sbjct: 36 KKVDQETLEELKELLITADVGYDNASLLTQKLASTKFNEMDD----NTVKQKLAESIENI 91
Query: 83 LCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142
L L KP KP VIM G G+GKTTT K A+ + G K + DTFRA
Sbjct: 92 L---LQVEKPLSI--NNKPHVIMVCGTNGNGKTTTIGKLAHRFKNTGKKVLVAACDTFRA 146
Query: 143 GAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALF 202
A +QL + K P +D IA + ++ E D++++DT+GR L
Sbjct: 147 AATEQLIVWSQKVNFPVVTGNQGADAASIAYQAMQQALNEQTDVLLIDTAGRLHNHKNLM 206
Query: 203 EEMRQVSEATN------PDLVIFVMDSSIGXXXXXXXXXXXXSVSVGAVIVTKMDGHAKG 256
EE+ ++ N P VI ++D++ G V++ +I+TK+DG AKG
Sbjct: 207 EELAKIRRIINKHDNNAPHDVILILDATTGQNAVNQVDAFLQFVNISGLIITKLDGTAKG 266
Query: 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLL 295
G + K + IG GE +++ + F K F + LL
Sbjct: 267 GVVIRIAQKYKLNIHAIGIGESVEQLQDFSAKEFAAGLL 305
>UNIPROTKB|Q97QH0 [details] [associations]
symbol:ftsY "Signal recognition particle receptor FtsY"
species:170187 "Streptococcus pneumoniae TIGR4" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_00920 InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR004390 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 PROSITE:PS00300 SMART:SM00382
SMART:SM00962 SMART:SM00963 GO:GO:0005525 GO:GO:0005737
GO:GO:0003924 EMBL:AE005672 GenomeReviews:AE005672_GR GO:GO:0031226
HOGENOM:HOG000036278 KO:K03110 ProtClustDB:PRK10416 GO:GO:0006614
SUPFAM:SSF47364 TIGRFAMs:TIGR00064 HSSP:P83749 PIR:D95144
RefSeq:NP_345709.1 ProteinModelPortal:Q97QH0
EnsemblBacteria:EBSTRT00000026851 GeneID:931757 KEGG:spn:SP_1244
PATRIC:19706881 OMA:DEGKSVI Uniprot:Q97QH0
Length = 429
Score = 280 (103.6 bits), Expect = 2.3e-24, P = 2.3e-24
Identities = 77/284 (27%), Positives = 136/284 (47%)
Query: 18 SNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQ 77
+N +DE+ E L E+ L+ +DV ++ + ++ L++ RR+I +
Sbjct: 148 ANFRSVDEEFFEE-LEEL---LIMSDVGVQVASNLTEELRYEAKLENAKKPDVLRRVIIE 203
Query: 78 AIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137
+ EL + D + +V++FVG+ G GKTT+ K A+ +++ G K LV A
Sbjct: 204 KLV-ELYEK-DGSYDESIHFQDNLTVMLFVGVNGVGKTTSIGKLAHRYKQAGKKVMLVAA 261
Query: 138 DTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQ 197
DTFRAGA QL + + +P ++DP + +G+E E D++++DT+GR +
Sbjct: 262 DTFRAGAVAQLAEWGRRVDVPVVTGPEKADPASVVFDGMERAVTEGIDILMIDTAGRLQN 321
Query: 198 EAALFEEMRQVSEATN------PDLVIFVMDSSIGXXXXXXXXXXXXSVSVGAVIVTKMD 251
+ L E+ ++ P +D+S G + +++TK+D
Sbjct: 322 KDNLMAELEKIGRIIKRVVPEAPHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKID 381
Query: 252 GHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLL 295
G A+GG L+ PV IG GE +D+ F+ + F+ LL
Sbjct: 382 GTARGGVVLAIREELNIPVKLIGFGEKIDDIGEFNSENFMKGLL 425
>TIGR_CMR|APH_1227 [details] [associations]
symbol:APH_1227 "signal recognition particle-docking
protein FtsY" species:212042 "Anaplasma phagocytophilum HZ"
[GO:0003924 "GTPase activity" evidence=ISS] [GO:0005047 "signal
recognition particle binding" evidence=ISS] [GO:0009306 "protein
secretion" evidence=ISS] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR004390 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0006184 EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0017111
eggNOG:COG0552 HOGENOM:HOG000036278 KO:K03110 ProtClustDB:PRK10416
GO:GO:0006614 SUPFAM:SSF47364 TIGRFAMs:TIGR00064 OMA:ADMGVET
RefSeq:YP_505757.1 ProteinModelPortal:Q2GIP4 STRING:Q2GIP4
GeneID:3931129 KEGG:aph:APH_1227 PATRIC:20951240
BioCyc:APHA212042:GHPM-1232-MONOMER Uniprot:Q2GIP4
Length = 305
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 72/227 (31%), Positives = 105/227 (46%)
Query: 75 IQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPAL 134
++ + +E+ L P T P +I+ G+ GSGKTTT K A+ KK +
Sbjct: 78 VRLKLASEIENFLQPRSAPITITH-TPHIILLCGVNGSGKTTTVAKLAHKFMKKNMSVII 136
Query: 135 VCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGR 194
DTFRA A +QL A + P +D +A + VE KE D++I+DT+GR
Sbjct: 137 GACDTFRAAAVEQLNVWAERISCPIVTGTIGADAASVAYKTVERAVKEPFDVVIIDTAGR 196
Query: 195 HKQEAALFEEMRQVSEATN------PDLVIFVMDSSIGXXXXXXXXXXXXSVSVGAVIVT 248
L EE+ ++ P +I V+D++IG V VG +I+T
Sbjct: 197 LHNHKNLMEELAKICRVIRRHDEKAPHDIILVLDATIGQNTFTQVEMFSSFVDVGGLILT 256
Query: 249 KMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLL 295
K+DG AKGG L + IGTGE +++ E F F LL
Sbjct: 257 KLDGTAKGGVVLRVSQKYNLMIHAIGTGEGIEDLEDFSATNFAKSLL 303
>DICTYBASE|DDB_G0277377 [details] [associations]
symbol:srpR "signal recognition particle receptor
alpha subunit" species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006886
"intracellular protein transport" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA]
[GO:0006184 "GTP catabolic process" evidence=IEA] [GO:0005785
"signal recognition particle receptor complex" evidence=IEA]
[GO:0005525 "GTP binding" evidence=IEA] [GO:0005047 "signal
recognition particle binding" evidence=IEA;ISS] [GO:0003924 "GTPase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0045047 "protein targeting to ER" evidence=ISS]
[GO:0005789 "endoplasmic reticulum membrane" evidence=IEA;ISS]
[GO:0016020 "membrane" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR007222 InterPro:IPR011012 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 Pfam:PF04086 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 dictyBase:DDB_G0277377 GO:GO:0005525
GO:GO:0005789 GO:GO:0003924 GenomeReviews:CM000151_GR
EMBL:AAFI02000019 SUPFAM:SSF64356 eggNOG:COG0552 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0045047 GO:GO:0005785 GO:GO:0005047
HSSP:P08240 RefSeq:XP_642799.1 ProteinModelPortal:Q54ZR7
STRING:Q54ZR7 EnsemblProtists:DDB0252680 GeneID:8620992
KEGG:ddi:DDB_G0277377 OMA:LILWSSC ProtClustDB:CLSZ2846855
Uniprot:Q54ZR7
Length = 615
Score = 273 (101.2 bits), Expect = 6.4e-23, P = 6.4e-23
Identities = 76/290 (26%), Positives = 138/290 (47%)
Query: 25 EKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELC 84
E +L + +T+ + DV K+V+ + T ++ LA +++Q + + +
Sbjct: 329 EPILADFKLHLTKKNVAPDVADKIVQSIGTGLEG----KKLATFQGVTSVVKQQMEDTIT 384
Query: 85 KMLDPGKP-----SFTPKKGK-PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138
++L P + KGK P I+F G+ G GK+T K Y+ G+K L D
Sbjct: 385 RILTPKRNIDILREVQAVKGKRPYSIVFSGVNGVGKSTNLAKVCYWLTANGYKCMLAACD 444
Query: 139 TFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQE 198
TFR+GA +QLK +A + + + D +A + + K D++++DT+GR +
Sbjct: 445 TFRSGAIEQLKTHADRLNVHLFERGYSKDAASVAQDAIAFAKDTGYDVVLIDTTGRMQNN 504
Query: 199 AALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXSVS------------VGAVI 246
L + + ++ N DLV+FV ++ +G S+S + +I
Sbjct: 505 EPLMKALSKLVNQNNVDLVLFVGEALVGNDGVDQLTKFDKSLSLLANTTQTHIRTIDGII 564
Query: 247 VTKMDG-HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLL 295
+TK D K G A+S V +T P++F+GTG++ + + ++K V LL
Sbjct: 565 LTKFDTIDDKVGAAISMVYSTGHPILFLGTGQNYTDLKRMNIKSVVKSLL 614
>UNIPROTKB|J9NTJ9 [details] [associations]
symbol:SRPR "Signal recognition particle receptor subunit
alpha" species:9615 "Canis lupus familiaris" [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IEA] [GO:0005785 "signal recognition particle receptor
complex" evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA]
[GO:0005047 "signal recognition particle binding" evidence=IEA]
[GO:0003924 "GTPase activity" evidence=IEA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0003924 SUPFAM:SSF64356 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005785 GO:GO:0005047
GeneTree:ENSGT00550000074936 EMBL:AAEX03003376 EMBL:AAEX03003378
EMBL:AAEX03003377 EMBL:AAEX03003379 Ensembl:ENSCAFT00000045313
Uniprot:J9NTJ9
Length = 637
Score = 219 (82.2 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 66/299 (22%), Positives = 137/299 (45%)
Query: 25 EKVLNECLNEITRALLQADVQFKLVREMQTNIK-KIVNLDDLAAGHNKRRIIQQAIFNEL 83
E VL++ + + + AD+ +L + ++ K++ K+ + Q+++ L
Sbjct: 338 ESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQAL-QESLVQIL 396
Query: 84 C--KMLDPGKPSFTPKKG-KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140
+ +D + ++ +P V+ F G+ G GK+T K +++ + G+ + DTF
Sbjct: 397 QPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTF 456
Query: 141 RAGAFDQLK-------------QNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLI 187
RAGA +QL+ ++A + + + D IA+E + + + D++
Sbjct: 457 RAGAVEQLRTHTRRLSALHPPEKHAGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVV 516
Query: 188 IVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXSVS------ 241
+VDT+GR + A L + ++ PDLV+FV ++ +G +++
Sbjct: 517 LVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQ 576
Query: 242 ----VGAVIVTKMDG-HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLL 295
+ +++TK D K G A+S T P++F+GTG+ + + K V+ L+
Sbjct: 577 TPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALM 635
>UNIPROTKB|F1PLH3 [details] [associations]
symbol:SRPR "Signal recognition particle receptor subunit
alpha" species:9615 "Canis lupus familiaris" [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IEA] [GO:0005785 "signal recognition particle receptor
complex" evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA]
[GO:0005047 "signal recognition particle binding" evidence=IEA]
[GO:0003924 "GTPase activity" evidence=IEA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0003924 SUPFAM:SSF64356 GO:GO:0006614
SUPFAM:SSF47364 KO:K13431 GO:GO:0005785 GO:GO:0005047 CTD:6734
GeneTree:ENSGT00550000074936 EMBL:AAEX03003376 EMBL:AAEX03003378
EMBL:AAEX03003377 EMBL:AAEX03003379 RefSeq:XP_546411.3
Ensembl:ENSCAFT00000016629 GeneID:489293 KEGG:cfa:489293
Uniprot:F1PLH3
Length = 638
Score = 219 (82.2 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 66/299 (22%), Positives = 137/299 (45%)
Query: 25 EKVLNECLNEITRALLQADVQFKLVREMQTNIK-KIVNLDDLAAGHNKRRIIQQAIFNEL 83
E VL++ + + + AD+ +L + ++ K++ K+ + Q+++ L
Sbjct: 339 ESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQAL-QESLVQIL 397
Query: 84 C--KMLDPGKPSFTPKKG-KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140
+ +D + ++ +P V+ F G+ G GK+T K +++ + G+ + DTF
Sbjct: 398 QPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTF 457
Query: 141 RAGAFDQLK-------------QNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLI 187
RAGA +QL+ ++A + + + D IA+E + + + D++
Sbjct: 458 RAGAVEQLRTHTRRLSALHPPEKHAGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVV 517
Query: 188 IVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXSVS------ 241
+VDT+GR + A L + ++ PDLV+FV ++ +G +++
Sbjct: 518 LVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQ 577
Query: 242 ----VGAVIVTKMDG-HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLL 295
+ +++TK D K G A+S T P++F+GTG+ + + K V+ L+
Sbjct: 578 TPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALM 636
>UNIPROTKB|J9P788 [details] [associations]
symbol:SRPR "Signal recognition particle receptor subunit
alpha" species:9615 "Canis lupus familiaris" [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IEA] [GO:0005785 "signal recognition particle receptor
complex" evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA]
[GO:0005047 "signal recognition particle binding" evidence=IEA]
[GO:0003924 "GTPase activity" evidence=IEA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0003924 SUPFAM:SSF64356 GO:GO:0006614
SUPFAM:SSF47364 GO:GO:0005785 GO:GO:0005047
GeneTree:ENSGT00550000074936 OMA:KEGSDGP EMBL:AAEX03003376
EMBL:AAEX03003378 EMBL:AAEX03003377 EMBL:AAEX03003379
Ensembl:ENSCAFT00000047935 Uniprot:J9P788
Length = 773
Score = 219 (82.2 bits), Expect = 2.3e-15, P = 2.3e-15
Identities = 66/299 (22%), Positives = 137/299 (45%)
Query: 25 EKVLNECLNEITRALLQADVQFKLVREMQTNIK-KIVNLDDLAAGHNKRRIIQQAIFNEL 83
E VL++ + + + AD+ +L + ++ K++ K+ + Q+++ L
Sbjct: 474 ESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQAL-QESLVQIL 532
Query: 84 C--KMLDPGKPSFTPKKG-KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140
+ +D + ++ +P V+ F G+ G GK+T K +++ + G+ + DTF
Sbjct: 533 QPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTF 592
Query: 141 RAGAFDQLK-------------QNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLI 187
RAGA +QL+ ++A + + + D IA+E + + + D++
Sbjct: 593 RAGAVEQLRTHTRRLSALHPPEKHAGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVV 652
Query: 188 IVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXSVS------ 241
+VDT+GR + A L + ++ PDLV+FV ++ +G +++
Sbjct: 653 LVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQ 712
Query: 242 ----VGAVIVTKMDG-HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLL 295
+ +++TK D K G A+S T P++F+GTG+ + + K V+ L+
Sbjct: 713 TPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALM 771
>POMBASE|SPBC3B9.03 [details] [associations]
symbol:SPBC3B9.03 "signal recognition particle receptor
alpha subunit Srp101 (predicted)" species:4896 "Schizosaccharomyces
pombe" [GO:0003924 "GTPase activity" evidence=ISM] [GO:0005047
"signal recognition particle binding" evidence=ISO] [GO:0005525
"GTP binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005785 "signal recognition particle receptor complex"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IC] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR007222 InterPro:IPR011012 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 Pfam:PF04086 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 PomBase:SPBC3B9.03
GO:GO:0005525 GO:GO:0005829 GO:GO:0005634 EMBL:CU329671
GO:GO:0003924 GenomeReviews:CU329671_GR SUPFAM:SSF64356
eggNOG:COG0552 GO:GO:0006614 SUPFAM:SSF47364 KO:K13431
GO:GO:0005785 GO:GO:0005047 HSSP:Q6MTB9 HOGENOM:HOG000201671
PIR:T40342 RefSeq:NP_596660.1 ProteinModelPortal:O43032
STRING:O43032 EnsemblFungi:SPBC3B9.03.1 GeneID:2540909
KEGG:spo:SPBC3B9.03 OMA:PVEANND OrthoDB:EOG42Z7ZQ NextBio:20802024
Uniprot:O43032
Length = 547
Score = 216 (81.1 bits), Expect = 2.8e-15, P = 2.8e-15
Identities = 70/309 (22%), Positives = 135/309 (43%)
Query: 9 SISRAIQQMSN---ATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIK-KIVNLDD 64
S S A SN + E+ L+ L ++ L + +V + E+ ++K ++N
Sbjct: 239 SASSAFSLFSNLIGGKYLKEEDLSPILKQMQEHLTKKNVANSIALELCESVKASLIN-KK 297
Query: 65 LAAGHNKRRIIQQAIFNELCKMLDPGKP--------SFTPKKGKPSVIMFVGLQGSGKTT 116
+ + + + +A + L ++L P S + +P I +G+ G GK+T
Sbjct: 298 VGSFDTVKNTVNKAFRDRLTQILTPSTSLDLLHSIRSVRKNENRPYTISLIGVNGVGKST 357
Query: 117 TCTKYAYYHQKKGWKPALVCADTFRAGAFDQLK------QNATKAKIPFYGSYTESDPVR 170
T K AY+ ++ + DTFR+GA +QL Q+ + I + D
Sbjct: 358 TLAKIAYWLLSNNFRILVAACDTFRSGAIEQLGVHVKNLQSLKGSSIELFAQGYGKDSSF 417
Query: 171 IAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXX 230
+ VE K+ + D+I++DT+GR + L + + ++AT D + V ++ +G
Sbjct: 418 VVKNAVEYAKQNSFDVILIDTAGRRHNDQRLMGSLEKFTKATKLDKIFQVAEALVGTDSL 477
Query: 231 XXXXXXXXSV---SVGAVIVTKMDGHAKGGGAL-SAVAATKSPVIFIGTGEHMDEFEVFD 286
S+ + I++K+D + G + V A + P+IF+G G+ +
Sbjct: 478 AQAKHFQASLYHRPLDGFIISKVDTVGQLVGVMVGMVYAVRVPIIFVGIGQTYSDLRTLS 537
Query: 287 VKPFVSRLL 295
V V +L+
Sbjct: 538 VDWVVDQLM 546
>UNIPROTKB|G3V480 [details] [associations]
symbol:SRP54 "Signal recognition particle 54 kDa protein"
species:9606 "Homo sapiens" [GO:0005525 "GTP binding" evidence=IEA]
[GO:0006614 "SRP-dependent cotranslational protein targeting to
membrane" evidence=IEA] InterPro:IPR013822 Pfam:PF02881
SMART:SM00963 GO:GO:0005525 GO:GO:0006614 SUPFAM:SSF47364
EMBL:AL049776 HGNC:HGNC:11301 ChiTaRS:SRP54
ProteinModelPortal:G3V480 SMR:G3V480 Ensembl:ENST00000555746
ArrayExpress:G3V480 Bgee:G3V480 Uniprot:G3V480
Length = 74
Score = 195 (73.7 bits), Expect = 3.2e-15, P = 3.2e-15
Identities = 37/74 (50%), Positives = 58/74 (78%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVLA LG I+ A++ +SNATII+E+VLN L E+ ALL+ADV KLV++++ N+K +
Sbjct: 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI 60
Query: 61 NLDDLAAGHNKRRI 74
+L+++A+G NKR++
Sbjct: 61 DLEEMASGLNKRKM 74
>UNIPROTKB|F1NXV4 [details] [associations]
symbol:SRPR "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003924 "GTPase activity" evidence=IEA] [GO:0005047
"signal recognition particle binding" evidence=IEA] [GO:0005525
"GTP binding" evidence=IEA] [GO:0005785 "signal recognition
particle receptor complex" evidence=IEA] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR007222
InterPro:IPR011012 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
Pfam:PF04086 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0003924 SUPFAM:SSF64356
GO:GO:0006614 SUPFAM:SSF47364 GO:GO:0005785 GO:GO:0005047
OMA:LILWSSC GeneTree:ENSGT00550000074936 EMBL:AADN02042027
IPI:IPI00593518 Ensembl:ENSGALT00000001579 Uniprot:F1NXV4
Length = 644
Score = 216 (81.1 bits), Expect = 3.9e-15, P = 3.9e-15
Identities = 57/220 (25%), Positives = 103/220 (46%)
Query: 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQ-----NAT- 153
+P V+ F G+ G GK+T K +++ + G+ + DTFRAGA +QL+ NA
Sbjct: 423 RPYVVTFCGVNGVGKSTNLAKISFWLIENGFSVLIAACDTFRAGAVEQLRTHTRRLNALH 482
Query: 154 -------KAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMR 206
+ + Y D IA+E + + + D+++VDT+GR + A L +
Sbjct: 483 PPESHGGRTMVQLYEKGYGKDAAGIAMEAISYARNQGFDVVLVDTAGRMQDNAPLMTALA 542
Query: 207 QVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXSVS----------VGAVIVTKMDG-HAK 255
++ PDLV+FV ++ +G +++ + +++TK D K
Sbjct: 543 KLIAVNAPDLVLFVGEALVGNEAVDQLVKFNKALADHSMAQTPRLIDGIVLTKFDTIDDK 602
Query: 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLL 295
G A+S T P++F+GTG+ + + K V+ L+
Sbjct: 603 VGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALM 642
>ASPGD|ASPL0000006202 [details] [associations]
symbol:AN6627 species:162425 "Emericella nidulans"
[GO:0006184 "GTP catabolic process" evidence=IEA] [GO:0005785
"signal recognition particle receptor complex" evidence=IEA]
[GO:0003924 "GTPase activity" evidence=IEA] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IEA] [GO:0045047 "protein targeting to ER" evidence=IEA]
[GO:0005525 "GTP binding" evidence=IEA] [GO:0005047 "signal
recognition particle binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0005789
"endoplasmic reticulum membrane" evidence=IEA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0003924 EMBL:BN001301 SUPFAM:SSF64356
EMBL:AACD01000110 eggNOG:COG0552 GO:GO:0006614 SUPFAM:SSF47364
KO:K13431 GO:GO:0005785 GO:GO:0005047 HOGENOM:HOG000201671
OrthoDB:EOG42Z7ZQ RefSeq:XP_664231.1 ProteinModelPortal:Q5AYK3
STRING:Q5AYK3 EnsemblFungi:CADANIAT00007408 GeneID:2870372
KEGG:ani:AN6627.2 OMA:THETGRR Uniprot:Q5AYK3
Length = 636
Score = 212 (79.7 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 69/305 (22%), Positives = 126/305 (41%)
Query: 6 LGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDL 65
+GG I +++ +L + + L V+ +LV + N + +
Sbjct: 331 VGGKILTEADLEKPLKAMEDHLLKKNVAREAAVRLCEGVKQELVGKKTGNFQSVDAALKS 390
Query: 66 AAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYH 125
A + R+I+ +L +D + +P VI VG+ G GK+T K Y+
Sbjct: 391 AMESSLRKILTPTSSLDLLHEIDTVTKANKQGTSRPYVISIVGVNGVGKSTNLGKICYFL 450
Query: 126 QKKGWKPALVCADTFRAGAFDQLKQNATKAK----------IPFYGSYTESDPVRIAVEG 175
+ ++ + DTFR+GA +QL+ +A K + Y D +A +
Sbjct: 451 LQNNYRILIAACDTFRSGAVEQLRVHARNLKELSARENVGAVELYEKGYGKDAANVAKDA 510
Query: 176 VETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXX 235
VE N D++++DT+GR + L + + ++ P+ + V ++ +G
Sbjct: 511 VEYGAANNFDVVLIDTAGRRHNDQRLMSSLEKFAKFAQPNKIFMVGEALVGTDSVMQARN 570
Query: 236 XXXSVSVG----AVIVTKMDGHAKGGGAL-SAVAATKSPVIFIGTGEHMDEFEVFDVKPF 290
+ G I++K D G L S V AT P++F+G G+H + V P+
Sbjct: 571 FNQAFGTGRNLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGVGQHYGDLRGLSV-PW 629
Query: 291 VSRLL 295
LL
Sbjct: 630 AVNLL 634
>UNIPROTKB|P06625 [details] [associations]
symbol:SRPR "Signal recognition particle receptor subunit
alpha" species:9615 "Canis lupus familiaris" [GO:0005789
"endoplasmic reticulum membrane" evidence=TAS] [GO:0005525 "GTP
binding" evidence=IEA] [GO:0006614 "SRP-dependent cotranslational
protein targeting to membrane" evidence=IEA] [GO:0005785 "signal
recognition particle receptor complex" evidence=IEA] [GO:0005047
"signal recognition particle binding" evidence=IEA] [GO:0003924
"GTPase activity" evidence=IEA] Reactome:REACT_86357
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR007222
InterPro:IPR011012 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
Pfam:PF04086 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 GO:GO:0005525 GO:GO:0005789 GO:GO:0003924
SUPFAM:SSF64356 eggNOG:COG0552 GO:GO:0006614 SUPFAM:SSF47364
GO:GO:0005785 Reactome:REACT_146484 GO:GO:0005047
HOGENOM:HOG000201671 HOVERGEN:HBG047566 OrthoDB:EOG4W0XCP
EMBL:X03184 PIR:A24570 ProteinModelPortal:P06625 SMR:P06625
STRING:P06625 PRIDE:P06625 InParanoid:P06625 Uniprot:P06625
Length = 638
Score = 208 (78.3 bits), Expect = 3.6e-14, P = 3.6e-14
Identities = 64/299 (21%), Positives = 135/299 (45%)
Query: 25 EKVLNECLNEITRALLQADVQFKLVREMQTNIK-KIVNLDDLAAGHNKRRIIQQAIFNEL 83
E VL++ + + + AD+ +L + ++ K++ K+ + Q+++ L
Sbjct: 339 ESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQAL-QESLVQIL 397
Query: 84 C--KMLDPGKPSFTPKKG-KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140
+ +D + ++ +P V+ F G+ G GK+T K +++ + G+ + DTF
Sbjct: 398 QPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTF 457
Query: 141 RAGAFDQLK-------------QNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLI 187
RAGA + ++ ++A + + D IA+E + + + D++
Sbjct: 458 RAGAVEHVRTHTRRLSALHPPEKHAGPTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVV 517
Query: 188 IVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXSVS------ 241
+VDT+GR + A L + ++ PDLV+FV ++ +G +++
Sbjct: 518 LVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQ 577
Query: 242 ----VGAVIVTKMDG-HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLL 295
+ +++TK D K G A+S T P++F+GTG+ + + K V+ L+
Sbjct: 578 TPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALM 636
>SGD|S000002700 [details] [associations]
symbol:SRP101 "Signal recognition particle (SRP) receptor
alpha subunit" species:4932 "Saccharomyces cerevisiae" [GO:0005525
"GTP binding" evidence=IEA;IPI] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA;IC;TAS]
[GO:0005047 "signal recognition particle binding" evidence=ISS;IMP]
[GO:0005785 "signal recognition particle receptor complex"
evidence=TAS] [GO:0005789 "endoplasmic reticulum membrane"
evidence=IEA;IDA] [GO:0045047 "protein targeting to ER"
evidence=IMP] [GO:0006810 "transport" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SGD:S000002700 GO:GO:0005525
EMBL:BK006938 GO:GO:0017111 SUPFAM:SSF64356 EMBL:U51031
eggNOG:COG0552 GO:GO:0006614 SUPFAM:SSF47364 RefSeq:NP_010578.3
GeneID:851886 KEGG:sce:YDR292C KO:K13431 RefSeq:NP_010582.3
GeneID:851890 KEGG:sce:YDR296W GO:GO:0005785 TCDB:3.A.5.8.1
GO:GO:0005047 PDB:1NRJ PDBsum:1NRJ HOGENOM:HOG000201671
GeneTree:ENSGT00550000074936 OrthoDB:EOG42Z7ZQ EMBL:M77274
PIR:S70121 ProteinModelPortal:P32916 SMR:P32916 DIP:DIP-1672N
IntAct:P32916 MINT:MINT-364995 STRING:P32916 PaxDb:P32916
PeptideAtlas:P32916 EnsemblFungi:YDR292C CYGD:YDR292c OMA:HVENLAQ
EvolutionaryTrace:P32916 NextBio:969862 Genevestigator:P32916
GermOnline:YDR292C InterPro:IPR015284 Pfam:PF09201 Uniprot:P32916
Length = 621
Score = 137 (53.3 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
Identities = 35/143 (24%), Positives = 68/143 (47%)
Query: 159 FYGSYTESDPV-RIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLV 217
F Y SD V +IA + ++ + +N D++++DT+GR + L ++ ++ PD +
Sbjct: 478 FEAGYGGSDLVTKIAKQAIKYSRDQNFDIVLMDTAGRRHNDPTLMSPLKSFADQAKPDKI 537
Query: 218 IFVMDSSIGXXXXXXXXXXXXSVSVGA----VIVTKMDGHAKGGGAL-SAVAATKSPVIF 272
I V ++ +G + G I++K D + G + + V AT P++F
Sbjct: 538 IMVGEALVGTDSVQQAKNFNDAFGKGRNLDFFIISKCDTVGEMLGTMVNMVYATGIPILF 597
Query: 273 IGTGEHMDEFEVFDVKPFVSRLL 295
+G G+ + VK V+ L+
Sbjct: 598 VGVGQTYTDLRTLSVKWAVNTLM 620
Score = 113 (44.8 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
Identities = 38/146 (26%), Positives = 69/146 (47%)
Query: 17 MSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQ 76
+ N TI +E L L ++T+ L+ +V + + + + A + +
Sbjct: 301 LGNKTI-NESDLKSVLEKLTQQLITKNVAPEAADYLTQQVSHDLVGSKTANWTSVENTAR 359
Query: 77 QAIFNELCKMLDPG-----------KPSFTPKKGK--PSVIMFVGLQGSGKTTTCTKYAY 123
+++ L ++L PG K S ++GK P V VG+ G GK+T +K A+
Sbjct: 360 ESLTKALTQILTPGVSVDLLREIQSKRSKKDEEGKCDPYVFSIVGVNGVGKSTNLSKLAF 419
Query: 124 YHQKKGWKPALVCADTFRAGAFDQLK 149
+ + +K +V DTFR+GA +QL+
Sbjct: 420 WLLQNNFKVLIVACDTFRSGAVEQLR 445
>TIGR_CMR|CJE_0061 [details] [associations]
symbol:CJE_0061 "flagellar biosynthetic protein FlhF"
species:195099 "Campylobacter jejuni RM1221" [GO:0001539 "ciliary
or flagellar motility" evidence=ISS] [GO:0005525 "GTP binding"
evidence=ISS] [GO:0009296 "flagellum assembly" evidence=ISS]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR020006
Pfam:PF00448 SMART:SM00382 SMART:SM00962 GO:GO:0005525
GO:GO:0005886 GO:GO:0019861 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0017111 GO:GO:0043064 GO:GO:0006614 eggNOG:COG1419 KO:K02404
HOGENOM:HOG000254735 ProtClustDB:PRK05703 TIGRFAMs:TIGR03499
RefSeq:YP_178086.1 ProteinModelPortal:Q5HX99 STRING:Q5HX99
GeneID:3230824 KEGG:cjr:CJE0061 PATRIC:20041827 OMA:KVATNEY
BioCyc:CJEJ195099:GJC0-65-MONOMER Uniprot:Q5HX99
Length = 484
Score = 199 (75.1 bits), Expect = 2.4e-13, P = 2.4e-13
Identities = 61/239 (25%), Positives = 112/239 (46%)
Query: 52 MQTNIKKIVN--LDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGL 109
++ +++ I+ ++++ A + Q F+ L + + P + KK K ++M VG
Sbjct: 233 LENHLEAIMKATIENMPAAMKTNKDAVQRYFHSLLRNILPCRVESDIKKQK--IMMLVGP 290
Query: 110 QGSGKTTTCTKYA--YYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESD 167
G GKTTT K A Y + K +K ++ DT+R GA +QL Q A K+P S D
Sbjct: 291 TGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQYAKMMKLPIIDSIEPKD 350
Query: 168 PVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDL-VIFVMDSSIG 226
E +++ NC++I+VDT G + + + + ++ +N ++ V V+ ++
Sbjct: 351 ----LDEAIKSLN--NCEVILVDTIGNSQYDQSKLAKTKEFLMHSNAEIDVNLVVSANTK 404
Query: 227 XXXXXXXXXXXXSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHM-DEFEV 284
+++ +I+TK D G S V T P+ F G+ + D+ EV
Sbjct: 405 QEDLMEIYKNFSFLNIDTLIITKFDETKVFGNIFSLVYETNIPLSFFSIGQEVPDDLEV 463
>UNIPROTKB|Q3V8C7 [details] [associations]
symbol:flhF "Flagellar biogenesis protein FlhF"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR020006 Pfam:PF00448 SMART:SM00382
SMART:SM00962 GO:GO:0005525 GO:GO:0005886 GO:GO:0019861
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0043064
GO:GO:0006614 KO:K02404 HOGENOM:HOG000254735 RefSeq:NP_954097.2
ProteinModelPortal:Q3V8C7 GeneID:2686907 KEGG:gsu:GSU3055
PATRIC:22028961 OMA:YRNELLV ProtClustDB:CLSK829079
BioCyc:GSUL243231:GH27-2995-MONOMER TIGRFAMs:TIGR03499
Uniprot:Q3V8C7
Length = 451
Score = 197 (74.4 bits), Expect = 3.5e-13, P = 3.5e-13
Identities = 62/211 (29%), Positives = 101/211 (47%)
Query: 72 RRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYA-YYHQKKGW 130
R + QA F K P T KK P +I VG G GKTTT K A +Y ++G
Sbjct: 232 RSFLPQA-FKSAIKCSGP----LTVKKNGPRIIALVGPTGVGKTTTIAKLAAHYALREGH 286
Query: 131 KPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVD 190
+ AL+ D FR GA +QLK + +P + T ++ + A+E + + K +LI++D
Sbjct: 287 RAALITIDNFRVGAVEQLKTYSRIMGVPVEVAATAAE-LEAAIE-LHSDK----ELILID 340
Query: 191 TSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXSVSVGAVIVTKM 250
T+GR +++ EE++ E+ + + ++ +SV VI TK+
Sbjct: 341 TAGRSHKDSEKIEELKGFLESRFAIEIHLCLAATTRDREVLEIVERFGVLSVSRVIFTKL 400
Query: 251 DGHAKGGGALSAVAATKSPVIFIGTGEHMDE 281
D G ++A TK P+ + TG+ + E
Sbjct: 401 DESESYGSIVNAHLRTKFPLSYFTTGQRVPE 431
>TIGR_CMR|GSU_3055 [details] [associations]
symbol:GSU_3055 "flagellar biosynthetic protein FlhF,
putative" species:243231 "Geobacter sulfurreducens PCA" [GO:0001539
"ciliary or flagellar motility" evidence=ISS] [GO:0003674
"molecular_function" evidence=ND] [GO:0009288 "bacterial-type
flagellum" evidence=ISS] [GO:0009296 "flagellum assembly"
evidence=ISS] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR020006 Pfam:PF00448 SMART:SM00382 SMART:SM00962
GO:GO:0005525 GO:GO:0005886 GO:GO:0019861 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0043064 GO:GO:0006614
KO:K02404 HOGENOM:HOG000254735 RefSeq:NP_954097.2
ProteinModelPortal:Q3V8C7 GeneID:2686907 KEGG:gsu:GSU3055
PATRIC:22028961 OMA:YRNELLV ProtClustDB:CLSK829079
BioCyc:GSUL243231:GH27-2995-MONOMER TIGRFAMs:TIGR03499
Uniprot:Q3V8C7
Length = 451
Score = 197 (74.4 bits), Expect = 3.5e-13, P = 3.5e-13
Identities = 62/211 (29%), Positives = 101/211 (47%)
Query: 72 RRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYA-YYHQKKGW 130
R + QA F K P T KK P +I VG G GKTTT K A +Y ++G
Sbjct: 232 RSFLPQA-FKSAIKCSGP----LTVKKNGPRIIALVGPTGVGKTTTIAKLAAHYALREGH 286
Query: 131 KPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVD 190
+ AL+ D FR GA +QLK + +P + T ++ + A+E + + K +LI++D
Sbjct: 287 RAALITIDNFRVGAVEQLKTYSRIMGVPVEVAATAAE-LEAAIE-LHSDK----ELILID 340
Query: 191 TSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXSVSVGAVIVTKM 250
T+GR +++ EE++ E+ + + ++ +SV VI TK+
Sbjct: 341 TAGRSHKDSEKIEELKGFLESRFAIEIHLCLAATTRDREVLEIVERFGVLSVSRVIFTKL 400
Query: 251 DGHAKGGGALSAVAATKSPVIFIGTGEHMDE 281
D G ++A TK P+ + TG+ + E
Sbjct: 401 DESESYGSIVNAHLRTKFPLSYFTTGQRVPE 431
>WB|WBGene00009521 [details] [associations]
symbol:F38A1.8 species:6239 "Caenorhabditis elegans"
[GO:0005525 "GTP binding" evidence=IEA] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0003924
"GTPase activity" evidence=IEA] [GO:0005047 "signal recognition
particle binding" evidence=IEA] [GO:0005785 "signal recognition
particle receptor complex" evidence=IEA] [GO:0006184 "GTP catabolic
process" evidence=IEA] [GO:0006886 "intracellular protein
transport" evidence=IEA] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0018996
"molting cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0009792 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0018996 GO:GO:0003924 GO:GO:0048477
SUPFAM:SSF64356 GO:GO:0006614 SUPFAM:SSF47364 KO:K13431
GO:GO:0005785 GO:GO:0005047 GeneTree:ENSGT00550000074936
OMA:KEGSDGP EMBL:FO080472 EMBL:FO081324 EMBL:FO081776
RefSeq:NP_741303.2 ProteinModelPortal:G4RYA5 SMR:G4RYA5
EnsemblMetazoa:F38A1.8 GeneID:185438 KEGG:cel:CELE_F38A1.8
CTD:185438 WormBase:F38A1.8 NextBio:928280 Uniprot:G4RYA5
Length = 625
Score = 194 (73.4 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 61/242 (25%), Positives = 115/242 (47%)
Query: 2 VLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNI-KKIV 60
V+ Q GG S M + ++K+ E LN + + + + + E I + +V
Sbjct: 307 VVKQSGGWFS-----MIKGLVGEKKLSAEDLNPLIEKMRENLILKNVASEPAEKICQSVV 361
Query: 61 NLDDLAAGHNKRRIIQQ---AIFNELCKMLDPG------KPSFTPKK-GKPSVIMFVGLQ 110
+ + +N R+ Q+ A+ L ++L P + K+ G+P VI+F G+
Sbjct: 362 SKLEGKVVNNFSRVAQEVKTAVRESLVQLLTPKHRVDILRDVIEAKRDGRPYVIVFCGVN 421
Query: 111 GSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNAT------KAKIPFYGSYT 164
G GK+T K ++ + + + DTFRAGA +QL+ +A K + +
Sbjct: 422 GVGKSTNLAKITFWLTENKHRVLIAAGDTFRAGAVEQLRTHARYLNDLHKNSVLLHEQGY 481
Query: 165 ESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSS 224
DP +A ++ +++ D+++VDT+GR + L E+ ++ PDLV+FV ++
Sbjct: 482 GKDPAGLAAAAIKKAAEQDFDVVLVDTAGRMQDNEPLMRELAKLIRVNEPDLVLFVGEAL 541
Query: 225 IG 226
+G
Sbjct: 542 VG 543
Score = 136 (52.9 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 34/141 (24%), Positives = 66/141 (46%)
Query: 167 DPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG 226
DP +A ++ +++ D+++VDT+GR + L E+ ++ PDLV+FV ++ +G
Sbjct: 484 DPAGLAAAAIKKAAEQDFDVVLVDTAGRMQDNEPLMRELAKLIRVNEPDLVLFVGEALVG 543
Query: 227 XXXXXXXXXXXXSVS-----------VGAVIVTKMDG-HAKGGGALSAVAATKSPVIFIG 274
+++ + +++TK D K G A+S T P++F+G
Sbjct: 544 NEAVDQLVKFNEALANHASPGQKPRLIDGIVLTKFDTIDDKVGAAVSMTYITGQPIVFVG 603
Query: 275 TGEHMDEFEVFDVKPFVSRLL 295
G+ + +V V LL
Sbjct: 604 CGQTYSDLRNLNVGAVVHSLL 624
>UNIPROTKB|Q722L6 [details] [associations]
symbol:LMOf2365_0717 "Putative flagellar biosynthesis
protein FlhF" species:265669 "Listeria monocytogenes serotype 4b
str. F2365" [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR000897 InterPro:IPR020006 Pfam:PF00448 GO:GO:0005525
GO:GO:0005886 GO:GO:0019861 EMBL:AE017262 GenomeReviews:AE017262_GR
GO:GO:0043064 GO:GO:0006614 eggNOG:COG1419 KO:K02404
TIGRFAMs:TIGR03499 RefSeq:YP_013321.1 ProteinModelPortal:Q722L6
STRING:Q722L6 GeneID:2797398 KEGG:lmf:LMOf2365_0717 PATRIC:20322642
HOGENOM:HOG000254016 OMA:QFHGKKK ProtClustDB:PRK12726
Uniprot:Q722L6
Length = 407
Score = 188 (71.2 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 49/187 (26%), Positives = 82/187 (43%)
Query: 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGS 162
+I +G G GKTTT K + K+ + DTFR+GA +Q + A K +
Sbjct: 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELI-- 265
Query: 163 YTESDPVRIAVEGVETFKKENC-DLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVM 221
+ P + E V+ NC D I++DT GR+ E+ ++ +PDL F
Sbjct: 266 -VATSPAELE-EAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTF 323
Query: 222 DSSIGXXXXXXXXXXXXSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDE 281
S + + + I+TKMD + G + + T PV+++ G+++ E
Sbjct: 324 SSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYTVMQETNLPVLYMTDGQNITE 383
Query: 282 FEVFDVK 288
+F K
Sbjct: 384 -NIFRPK 389
>CGD|CAL0003010 [details] [associations]
symbol:orf19.3952 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005789 "endoplasmic reticulum membrane" evidence=IEA]
[GO:0045047 "protein targeting to ER" evidence=IEA] [GO:0005525
"GTP binding" evidence=IEA] [GO:0005047 "signal recognition
particle binding" evidence=IEA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 Pfam:PF04086 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 CGD:CAL0003010 GO:GO:0005525
GO:GO:0003924 EMBL:AACQ01000012 eggNOG:COG0552 GO:GO:0006614
SUPFAM:SSF47364 KO:K13431 GO:GO:0005785 GO:GO:0005047
RefSeq:XP_721861.1 ProteinModelPortal:Q5AK68 STRING:Q5AK68
GeneID:3636513 KEGG:cal:CaO19.3952 Uniprot:Q5AK68
Length = 535
Score = 178 (67.7 bits), Expect = 8.0e-11, P = 8.0e-11
Identities = 53/176 (30%), Positives = 91/176 (51%)
Query: 74 IIQQAIFNELCKMLDPGKPS---FTPKKG-----KPSVIMFVGLQGSGKTTTCTKYAYYH 125
+ +QA+ +EL K+L P + K+ +P VI VG+ G GK+T K A++
Sbjct: 286 VYKQALTDELTKILTPNVSTDLLHDIKRNAELNTRPYVISVVGVNGVGKSTNLAKLAFWF 345
Query: 126 QKKGWKPALVCA-DTFRAGAFDQLKQNA------------TKAKIP-FYGSYTESDPV-R 170
+ L+CA DTFR+GA +QLK + TK++I F Y D V +
Sbjct: 346 LQNNLN-VLICACDTFRSGAVEQLKVHVNNLNRLNEASTNTKSRIDIFEKGYGSGDHVVQ 404
Query: 171 IAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG 226
A + V+ ++ D++++DT+GR A L +++ +A NP+ +I V ++ +G
Sbjct: 405 TAKQAVQYAEENKFDIVLIDTAGRTHSNAKLMAPLKKFGDAANPNKIIMVGEALVG 460
Score = 144 (55.7 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 38/150 (25%), Positives = 74/150 (49%)
Query: 153 TKAKIP-FYGSYTESDPV-RIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSE 210
TK++I F Y D V + A + V+ ++ D++++DT+GR A L +++ +
Sbjct: 385 TKSRIDIFEKGYGSGDHVVQTAKQAVQYAEENKFDIVLIDTAGRTHSNAKLMAPLKKFGD 444
Query: 211 ATNPDLVIFVMDSSIGXXXXXXXXXXXXSV----SVGAVIVTKMDGHAK-GGGALSAVAA 265
A NP+ +I V ++ +G + ++ I++K+D G ++ V A
Sbjct: 445 AANPNKIIMVGEALVGTDSVEQATNFNKAFGNKRTLDFFIISKVDTVGDLVGTMINMVMA 504
Query: 266 TKSPVIFIGTGEHMDEFEVFDVKPFVSRLL 295
T P++F+GTG+ + + VK V L+
Sbjct: 505 TNVPILFVGTGQTYTDIKRLSVKQVVEMLM 534
>MGI|MGI:1914648 [details] [associations]
symbol:Srpr "signal recognition particle receptor ('docking
protein')" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003924 "GTPase activity" evidence=IEA]
[GO:0005047 "signal recognition particle binding" evidence=IEA]
[GO:0005525 "GTP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0005785 "signal recognition particle
receptor complex" evidence=IEA] [GO:0006184 "GTP catabolic process"
evidence=IEA] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0006886 "intracellular protein transport"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR007222
InterPro:IPR011012 InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881
Pfam:PF04086 PROSITE:PS00300 SMART:SM00382 SMART:SM00962
SMART:SM00963 MGI:MGI:1914648 GO:GO:0005525 GO:GO:0003924
SUPFAM:SSF64356 eggNOG:COG0552 GO:GO:0006614 SUPFAM:SSF47364
KO:K13431 GO:GO:0005785 GO:GO:0005047 CTD:6734 HOGENOM:HOG000201671
HOVERGEN:HBG047566 OrthoDB:EOG4W0XCP GeneTree:ENSGT00550000074936
OMA:KEGSDGP EMBL:AK004967 EMBL:AK038017 EMBL:BC012512 EMBL:BC021839
IPI:IPI00119695 RefSeq:NP_080406.1 UniGene:Mm.284688
ProteinModelPortal:Q9DBG7 SMR:Q9DBG7 STRING:Q9DBG7
PhosphoSite:Q9DBG7 PaxDb:Q9DBG7 PRIDE:Q9DBG7
Ensembl:ENSMUST00000034541 GeneID:67398 KEGG:mmu:67398
UCSC:uc009osy.1 InParanoid:Q9DBG7 NextBio:324466 Bgee:Q9DBG7
Genevestigator:Q9DBG7 GermOnline:ENSMUSG00000032042 Uniprot:Q9DBG7
Length = 636
Score = 177 (67.4 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 54/222 (24%), Positives = 104/222 (46%)
Query: 25 EKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELC 84
E VL++ + + + AD+ +L + ++ V + ++QA+ L
Sbjct: 337 ESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKV----MGTFSTVTSTVKQALQESLV 392
Query: 85 KMLDPGKP-------SFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137
++L P + ++ +P V+ F G+ G GK+T K +++ + G+ +
Sbjct: 393 QILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAAC 452
Query: 138 DTFRAGAFDQLKQNATK--AKIP--FYGSYTE---------SDPVRIAVEGVETFKKENC 184
DTFRAGA +QL+ + + A P +G T D IA+E + + +
Sbjct: 453 DTFRAGAVEQLRTHTRRLTALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGF 512
Query: 185 DLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG 226
D+++VDT+GR + A L + ++ PDLV+FV ++ +G
Sbjct: 513 DVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVG 554
Score = 145 (56.1 bits), Expect = 5.7e-07, P = 5.7e-07
Identities = 38/168 (22%), Positives = 76/168 (45%)
Query: 139 TFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQE 198
T R A +++ + + + D IA+E + + + D+++VDT+GR +
Sbjct: 467 TRRLTALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDN 526
Query: 199 AALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXSVS----------VGAVIVT 248
A L + ++ PDLV+FV ++ +G +++ + +++T
Sbjct: 527 APLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLT 586
Query: 249 KMDG-HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLL 295
K D K G A+S T P++F+GTG+ + + K V+ L+
Sbjct: 587 KFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALM 634
>RGD|1311504 [details] [associations]
symbol:Srpr "signal recognition particle receptor ('docking
protein')" species:10116 "Rattus norvegicus" [GO:0003924 "GTPase
activity" evidence=IEA] [GO:0005047 "signal recognition particle
binding" evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA]
[GO:0005785 "signal recognition particle receptor complex"
evidence=IEA] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=IEA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
RGD:1311504 GO:GO:0005525 GO:GO:0003924 SUPFAM:SSF64356
eggNOG:COG0552 GO:GO:0006614 SUPFAM:SSF47364 KO:K13431
GO:GO:0005785 GO:GO:0005047 CTD:6734 HOGENOM:HOG000201671
HOVERGEN:HBG047566 OrthoDB:EOG4W0XCP GeneTree:ENSGT00550000074936
OMA:KEGSDGP EMBL:BC105782 IPI:IPI00362579 RefSeq:NP_001029322.1
UniGene:Rn.18349 SMR:Q3KRC3 STRING:Q3KRC3
Ensembl:ENSRNOT00000015177 GeneID:315548 KEGG:rno:315548
UCSC:RGD:1311504 InParanoid:Q3KRC3 NextBio:669402
Genevestigator:Q3KRC3 Uniprot:Q3KRC3
Length = 636
Score = 177 (67.4 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 54/222 (24%), Positives = 104/222 (46%)
Query: 25 EKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELC 84
E VL++ + + + AD+ +L + ++ V + ++QA+ L
Sbjct: 337 ESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKV----MGTFSTVTSTVKQALQESLV 392
Query: 85 KMLDPGKP-------SFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137
++L P + ++ +P V+ F G+ G GK+T K +++ + G+ +
Sbjct: 393 QILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAAC 452
Query: 138 DTFRAGAFDQLKQNATK--AKIP--FYGSYTE---------SDPVRIAVEGVETFKKENC 184
DTFRAGA +QL+ + + A P +G T D IA+E + + +
Sbjct: 453 DTFRAGAVEQLRTHTRRLTALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGF 512
Query: 185 DLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG 226
D+++VDT+GR + A L + ++ PDLV+FV ++ +G
Sbjct: 513 DVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVG 554
Score = 145 (56.1 bits), Expect = 5.7e-07, P = 5.7e-07
Identities = 38/168 (22%), Positives = 76/168 (45%)
Query: 139 TFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQE 198
T R A +++ + + + D IA+E + + + D+++VDT+GR +
Sbjct: 467 TRRLTALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDN 526
Query: 199 AALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXSVS----------VGAVIVT 248
A L + ++ PDLV+FV ++ +G +++ + +++T
Sbjct: 527 APLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLT 586
Query: 249 KMDG-HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLL 295
K D K G A+S T P++F+GTG+ + + K V+ L+
Sbjct: 587 KFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALM 634
>UNIPROTKB|P08240 [details] [associations]
symbol:SRPR "Signal recognition particle receptor subunit
alpha" species:9606 "Homo sapiens" [GO:0003924 "GTPase activity"
evidence=IEA] [GO:0005047 "signal recognition particle binding"
evidence=IEA] [GO:0005785 "signal recognition particle receptor
complex" evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=TAS] [GO:0006613
"cotranslational protein targeting to membrane" evidence=TAS]
[GO:0016021 "integral to membrane" evidence=TAS] [GO:0005789
"endoplasmic reticulum membrane" evidence=TAS] [GO:0006412
"translation" evidence=TAS] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=TAS]
[GO:0006987 "activation of signaling protein activity involved in
unfolded protein response" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0030968 "endoplasmic reticulum
unfolded protein response" evidence=TAS] [GO:0044267 "cellular
protein metabolic process" evidence=TAS] Reactome:REACT_71
Reactome:REACT_17015 InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR007222 InterPro:IPR011012 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 Pfam:PF04086 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0016021 Reactome:REACT_116125 GO:GO:0006987 EMBL:CH471065
GO:GO:0006412 GO:GO:0003924 SUPFAM:SSF64356 eggNOG:COG0552
GO:GO:0006614 SUPFAM:SSF47364 KO:K13431 GO:GO:0005785 GO:GO:0005047
PDB:2GO5 PDBsum:2GO5 PDB:2FH5 PDBsum:2FH5 CTD:6734
HOGENOM:HOG000201671 HOVERGEN:HBG047566 OrthoDB:EOG4W0XCP
EMBL:X06272 EMBL:AK312377 EMBL:AP001318 EMBL:BC001162 EMBL:BC009110
EMBL:BC013583 IPI:IPI00385267 PIR:A29440 RefSeq:NP_001171313.1
RefSeq:NP_003130.2 UniGene:Hs.368376 ProteinModelPortal:P08240
SMR:P08240 IntAct:P08240 MINT:MINT-1404634 STRING:P08240
PhosphoSite:P08240 DMDM:20455516 PaxDb:P08240 PRIDE:P08240
DNASU:6734 Ensembl:ENST00000332118 GeneID:6734 KEGG:hsa:6734
UCSC:uc001qdh.3 GeneCards:GC11M126132 HGNC:HGNC:11307 MIM:182180
neXtProt:NX_P08240 PharmGKB:PA36131 InParanoid:P08240 OMA:KEGSDGP
ChiTaRS:SRPR EvolutionaryTrace:P08240 GenomeRNAi:6734 NextBio:26272
ArrayExpress:P08240 Bgee:P08240 CleanEx:HS_SRPR
Genevestigator:P08240 GermOnline:ENSG00000182934 Uniprot:P08240
Length = 638
Score = 177 (67.4 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 54/222 (24%), Positives = 104/222 (46%)
Query: 25 EKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELC 84
E VL++ + + + AD+ +L + ++ V + ++QA+ L
Sbjct: 339 ESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKV----MGTFSTVTSTVKQALQESLV 394
Query: 85 KMLDPGKP-------SFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137
++L P + ++ +P V+ F G+ G GK+T K +++ + G+ +
Sbjct: 395 QILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAAC 454
Query: 138 DTFRAGAFDQLKQNATK--AKIP--FYGSYTE---------SDPVRIAVEGVETFKKENC 184
DTFRAGA +QL+ + + A P +G T D IA+E + + +
Sbjct: 455 DTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGF 514
Query: 185 DLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG 226
D+++VDT+GR + A L + ++ PDLV+FV ++ +G
Sbjct: 515 DVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVG 556
Score = 147 (56.8 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 38/168 (22%), Positives = 76/168 (45%)
Query: 139 TFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQE 198
T R A +++ + + + D IA+E + + + D+++VDT+GR +
Sbjct: 469 TRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDN 528
Query: 199 AALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXSVS----------VGAVIVT 248
A L + ++ PDLV+FV ++ +G +++ + +++T
Sbjct: 529 APLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLT 588
Query: 249 KMDG-HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLL 295
K D K G A+S T P++F+GTG+ + + K V+ L+
Sbjct: 589 KFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALM 636
>FB|FBgn0010391 [details] [associations]
symbol:Gtp-bp "GTP-binding protein" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=NAS] [GO:0005789
"endoplasmic reticulum membrane" evidence=IDA] [GO:0007409
"axonogenesis" evidence=IEP] [GO:0050708 "regulation of protein
secretion" evidence=IEP] [GO:0005785 "signal recognition particle
receptor complex" evidence=ISS] [GO:0005047 "signal recognition
particle binding" evidence=ISS] [GO:0005525 "GTP binding"
evidence=IEA;NAS] [GO:0006184 "GTP catabolic process" evidence=IEA]
[GO:0006614 "SRP-dependent cotranslational protein targeting to
membrane" evidence=IEA] [GO:0003924 "GTPase activity" evidence=IEA]
[GO:0005811 "lipid particle" evidence=IDA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0005789 GO:GO:0005811 EMBL:AE014298
GO:GO:0003924 GO:GO:0003723 GO:GO:0007409 GO:GO:0050708
SUPFAM:SSF64356 eggNOG:COG0552 GO:GO:0006614 SUPFAM:SSF47364
KO:K13431 GO:GO:0005785 GO:GO:0005047 OMA:LILWSSC EMBL:AY061329
EMBL:S65640 RefSeq:NP_524887.2 UniGene:Dm.129
ProteinModelPortal:Q9U5L1 SMR:Q9U5L1 IntAct:Q9U5L1 MINT:MINT-765133
STRING:Q9U5L1 PaxDb:Q9U5L1 EnsemblMetazoa:FBtr0073480 GeneID:47251
KEGG:dme:Dmel_CG2522 CTD:47251 FlyBase:FBgn0010391
GeneTree:ENSGT00550000074936 InParanoid:Q9U5L1 OrthoDB:EOG4W0VV7
PhylomeDB:Q9U5L1 GenomeRNAi:47251 NextBio:838983 Bgee:Q9U5L1
GermOnline:CG2522 Uniprot:Q9U5L1
Length = 614
Score = 176 (67.0 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 59/245 (24%), Positives = 115/245 (46%)
Query: 7 GGSIS--RAIQQMSNATIID-EKVLNECLNEITRALLQADVQFKLVREMQTNI--KKIVN 61
GG +S + I ++ D + L + + + + +++ KL + ++ K++
Sbjct: 295 GGLLSYFKGIVGAKTMSLADLQPALEKMRDHLISKNVASEIAAKLCDSVAASLDGKQMGT 354
Query: 62 LDDLAAGHNKRRIIQQAIFNELCKMLDPGK------PSFTPKK-GKPSVIMFVGLQGSGK 114
D +A+ +++A+ L ++L P + + K+ G+P I+F G+ G GK
Sbjct: 355 FDSIASQ------VKEALTESLVRILSPKRRIDIIRDALESKRNGRPYTIIFCGVNGVGK 408
Query: 115 TTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQ-----NATK--AK------IPFYG 161
+T K ++ + + + DTFRAGA +QL+ NA AK + Y
Sbjct: 409 STNLAKICFWLIENDFNVLIAACDTFRAGAVEQLRTHTRHLNALHPAAKHDGRNMVQLYE 468
Query: 162 SYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVM 221
D IA+E ++ D+++VDT+GR + L + ++ + NPDLV+FV
Sbjct: 469 KGYGKDAAGIAMEAIKFAHDTRVDVVLVDTAGRMQDNEPLMRSLSKLIKVNNPDLVLFVG 528
Query: 222 DSSIG 226
++ +G
Sbjct: 529 EALVG 533
Score = 149 (57.5 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 36/140 (25%), Positives = 68/140 (48%)
Query: 167 DPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG 226
D IA+E ++ D+++VDT+GR + L + ++ + NPDLV+FV ++ +G
Sbjct: 474 DAAGIAMEAIKFAHDTRVDVVLVDTAGRMQDNEPLMRSLSKLIKVNNPDLVLFVGEALVG 533
Query: 227 XXXXXXXXXXXXSVS----------VGAVIVTKMDG-HAKGGGALSAVAATKSPVIFIGT 275
S++ + +++TK D K G A+S T P++F+GT
Sbjct: 534 NEAVDQLVKFNQSLADYSSNENPHIIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGT 593
Query: 276 GEHMDEFEVFDVKPFVSRLL 295
G+ + + +V V+ L+
Sbjct: 594 GQTYADLKAINVNAVVNSLM 613
>UNIPROTKB|F1S754 [details] [associations]
symbol:SRPR "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=IEA] [GO:0005785 "signal
recognition particle receptor complex" evidence=IEA] [GO:0005525
"GTP binding" evidence=IEA] [GO:0005047 "signal recognition
particle binding" evidence=IEA] [GO:0003924 "GTPase activity"
evidence=IEA] InterPro:IPR000897 InterPro:IPR003593
InterPro:IPR007222 InterPro:IPR011012 InterPro:IPR013822
Pfam:PF00448 Pfam:PF02881 Pfam:PF04086 PROSITE:PS00300
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0003924 SUPFAM:SSF64356 GO:GO:0006614 SUPFAM:SSF47364
GO:GO:0005785 GO:GO:0005047 GeneTree:ENSGT00550000074936
OMA:KEGSDGP EMBL:CU466237 EMBL:FP102836 EMBL:GACC01000039
Ensembl:ENSSSCT00000016593 Uniprot:F1S754
Length = 638
Score = 175 (66.7 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 54/222 (24%), Positives = 104/222 (46%)
Query: 25 EKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELC 84
E VL++ + + + AD+ +L + + ++ V + ++QA+ L
Sbjct: 339 ESVLDKMRDHLIAKNVAADIAVQLCESVASKLEGKV----MGTFSTVTSTVKQALQESLV 394
Query: 85 KMLDPGKP-------SFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137
++L P + + +P V+ F G+ G GK+T K +++ + G+ +
Sbjct: 395 QILQPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAAC 454
Query: 138 DTFRAGAFDQLKQNATK--AKIP--FYGSYTE---------SDPVRIAVEGVETFKKENC 184
DTFRAGA +QL+ + + A P +G T D IA+E + + +
Sbjct: 455 DTFRAGAVEQLRTHTRRLSALHPPENHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGF 514
Query: 185 DLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG 226
D+++VDT+GR + A L + ++ PDLV+FV ++ +G
Sbjct: 515 DVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVG 556
Score = 146 (56.5 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 38/168 (22%), Positives = 75/168 (44%)
Query: 139 TFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQE 198
T R A + + + + + D IA+E + + + D+++VDT+GR +
Sbjct: 469 TRRLSALHPPENHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDN 528
Query: 199 AALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXSVS----------VGAVIVT 248
A L + ++ PDLV+FV ++ +G +++ + +++T
Sbjct: 529 APLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLT 588
Query: 249 KMDG-HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLL 295
K D K G A+S T P++F+GTG+ + + K V+ L+
Sbjct: 589 KFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALM 636
>UNIPROTKB|F1MNJ2 [details] [associations]
symbol:SRPR "Signal recognition particle receptor subunit
alpha" species:9913 "Bos taurus" [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA]
[GO:0005785 "signal recognition particle receptor complex"
evidence=IEA] [GO:0005525 "GTP binding" evidence=IEA] [GO:0005047
"signal recognition particle binding" evidence=IEA] [GO:0003924
"GTPase activity" evidence=IEA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
SMART:SM00382 SMART:SM00962 SMART:SM00963 GO:GO:0005525
GO:GO:0003924 SUPFAM:SSF64356 GO:GO:0006614 SUPFAM:SSF47364
GO:GO:0005785 GO:GO:0005047 IPI:IPI00695733
GeneTree:ENSGT00550000074936 OMA:KEGSDGP EMBL:DAAA02063109
Ensembl:ENSBTAT00000018762 Uniprot:F1MNJ2
Length = 598
Score = 174 (66.3 bits), Expect = 2.8e-10, P = 2.8e-10
Identities = 54/222 (24%), Positives = 103/222 (46%)
Query: 25 EKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELC 84
E VL++ + + + AD+ +L + ++ V + ++QA+ L
Sbjct: 340 ESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKV----MGTFSTVTSTVKQALQESLV 395
Query: 85 KMLDPGKP-------SFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137
++L P + + +P V+ F G+ G GK+T K +++ + G+ +
Sbjct: 396 QILQPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAAC 455
Query: 138 DTFRAGAFDQLKQNATK--AKIP--FYGSYTE---------SDPVRIAVEGVETFKKENC 184
DTFRAGA +QL+ + + A P +G T D IA+E + + +
Sbjct: 456 DTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGF 515
Query: 185 DLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG 226
D+++VDT+GR + A L + ++ PDLV+FV ++ +G
Sbjct: 516 DVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVG 557
>UNIPROTKB|Q3MHE8 [details] [associations]
symbol:SRPR "Signal recognition particle receptor subunit
alpha" species:9913 "Bos taurus" [GO:0005525 "GTP binding"
evidence=IEA] [GO:0006614 "SRP-dependent cotranslational protein
targeting to membrane" evidence=IEA] [GO:0005785 "signal
recognition particle receptor complex" evidence=IEA] [GO:0005047
"signal recognition particle binding" evidence=IEA] [GO:0003924
"GTPase activity" evidence=IEA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
GO:GO:0005525 GO:GO:0003924 SUPFAM:SSF64356 eggNOG:COG0552
GO:GO:0006614 SUPFAM:SSF47364 KO:K13431 GO:GO:0005785 GO:GO:0005047
EMBL:BC105264 IPI:IPI00695733 RefSeq:NP_001068590.1 UniGene:Bt.5518
HSSP:P08240 ProteinModelPortal:Q3MHE8 SMR:Q3MHE8 STRING:Q3MHE8
PRIDE:Q3MHE8 GeneID:281504 KEGG:bta:281504 CTD:6734
HOGENOM:HOG000201671 HOVERGEN:HBG047566 InParanoid:Q3MHE8
OrthoDB:EOG4W0XCP NextBio:20805473 Uniprot:Q3MHE8
Length = 639
Score = 174 (66.3 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 54/222 (24%), Positives = 103/222 (46%)
Query: 25 EKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELC 84
E VL++ + + + AD+ +L + ++ V + ++QA+ L
Sbjct: 340 ESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKV----MGTFSTVTSTVKQALQESLV 395
Query: 85 KMLDPGKP-------SFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137
++L P + + +P V+ F G+ G GK+T K +++ + G+ +
Sbjct: 396 QILQPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAAC 455
Query: 138 DTFRAGAFDQLKQNATK--AKIP--FYGSYTE---------SDPVRIAVEGVETFKKENC 184
DTFRAGA +QL+ + + A P +G T D IA+E + + +
Sbjct: 456 DTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGF 515
Query: 185 DLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG 226
D+++VDT+GR + A L + ++ PDLV+FV ++ +G
Sbjct: 516 DVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVG 557
Score = 147 (56.8 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 38/168 (22%), Positives = 76/168 (45%)
Query: 139 TFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQE 198
T R A +++ + + + D IA+E + + + D+++VDT+GR +
Sbjct: 470 TRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDN 529
Query: 199 AALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXSVS----------VGAVIVT 248
A L + ++ PDLV+FV ++ +G +++ + +++T
Sbjct: 530 APLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLT 589
Query: 249 KMDG-HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLL 295
K D K G A+S T P++F+GTG+ + + K V+ L+
Sbjct: 590 KFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALM 637
>ZFIN|ZDB-GENE-030219-11 [details] [associations]
symbol:srpr "signal recognition particle receptor
(docking protein)" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005525 "GTP binding"
evidence=IEA] [GO:0005785 "signal recognition particle receptor
complex" evidence=IEA] [GO:0006614 "SRP-dependent cotranslational
protein targeting to membrane" evidence=IEA] [GO:0003924 "GTPase
activity" evidence=IEA] [GO:0006184 "GTP catabolic process"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005047
"signal recognition particle binding" evidence=IEA] [GO:0006886
"intracellular protein transport" evidence=IEA] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR007222 InterPro:IPR011012
InterPro:IPR013822 Pfam:PF00448 Pfam:PF02881 Pfam:PF04086
PROSITE:PS00300 SMART:SM00382 SMART:SM00962 SMART:SM00963
ZFIN:ZDB-GENE-030219-11 GO:GO:0005525 GO:GO:0003924 SUPFAM:SSF64356
GO:GO:0006614 SUPFAM:SSF47364 KO:K13431 GO:GO:0005785 GO:GO:0005047
CTD:6734 GeneTree:ENSGT00550000074936 EMBL:CU469519 IPI:IPI00799782
RefSeq:XP_697518.3 UniGene:Dr.79180 Ensembl:ENSDART00000086823
GeneID:569063 KEGG:dre:569063 NextBio:20889487 Uniprot:E7EZW6
Length = 650
Score = 173 (66.0 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 44/141 (31%), Positives = 72/141 (51%)
Query: 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLK--QNATKAKI 157
KP VI F G+ G GK+T K +Y+ + G+ + DTFRAGA +QL+ Q +
Sbjct: 429 KPFVITFCGVNGVGKSTNLAKISYWLIENGFTVLIAACDTFRAGAVEQLRTHQRRLNSLH 488
Query: 158 P------------FYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEM 205
P F Y + D IA+E + + + D++++DT+GR + A L +
Sbjct: 489 PPEKHGGQPAVQLFEKGYGK-DAAGIAMEAIAFARNQGFDVVLIDTAGRMQDNAPLMTAL 547
Query: 206 RQVSEATNPDLVIFVMDSSIG 226
++ PDLV+FV ++ +G
Sbjct: 548 AKLIAVNTPDLVLFVGEALVG 568
Score = 144 (55.7 bits), Expect = 9.7e-07, Sum P(2) = 9.7e-07
Identities = 34/140 (24%), Positives = 67/140 (47%)
Query: 167 DPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG 226
D IA+E + + + D++++DT+GR + A L + ++ PDLV+FV ++ +G
Sbjct: 509 DAAGIAMEAIAFARNQGFDVVLIDTAGRMQDNAPLMTALAKLIAVNTPDLVLFVGEALVG 568
Query: 227 XXXXXXXXXXXXSVS----------VGAVIVTKMDG-HAKGGGALSAVAATKSPVIFIGT 275
+++ + +++TK D K G A+S T P++F+GT
Sbjct: 569 NEAVDQLVKFNRALADHSKSDKPRLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGT 628
Query: 276 GEHMDEFEVFDVKPFVSRLL 295
G+ + + + VS L+
Sbjct: 629 GQTYSDLRSLNARAVVSALM 648
Score = 41 (19.5 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 89 PGKPSFTPK-KGKP 101
P KPS +PK +GKP
Sbjct: 226 PEKPSKSPKPQGKP 239
>UNIPROTKB|Q81SE2 [details] [associations]
symbol:BA_1718 "Putative flagellar biosynthetic protein
FlhF" species:1392 "Bacillus anthracis" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000897 InterPro:IPR003593 Pfam:PF00448
SMART:SM00382 GO:GO:0005525 GO:GO:0019861 EMBL:AE016879
GenomeReviews:AE016879_GR GO:GO:0017111 GO:GO:0006614 KO:K02404
RefSeq:NP_844153.1 ProteinModelPortal:Q81SE2 DNASU:1086348
EnsemblBacteria:EBBACT00000010753 GeneID:1086348 KEGG:ban:BA_1718
PATRIC:18781034 HOGENOM:HOG000133114 ProtClustDB:PRK06731
Uniprot:Q81SE2
Length = 270
Score = 154 (59.3 bits), Expect = 8.0e-09, P = 8.0e-09
Identities = 45/176 (25%), Positives = 75/176 (42%)
Query: 104 IMFVGLQGSGKTTTCTKYAY-YHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGS 162
I +G G GKTTT K A+ +H KK + D R G QL Q+ K I F
Sbjct: 78 IALIGPTGVGKTTTLAKMAWQFHGKKK-TVGFITTDHSRIGTVQQL-QDYVKT-IGFEVI 134
Query: 163 YTESDPVRIAVEGVETFKKE-NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVM 221
+ + FK+E D I++DT+G++ + + EEM + PD + +
Sbjct: 135 AVRDEAAM--TRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTL 192
Query: 222 DSSIGXXXXXXXXXXXXSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGE 277
+S+ + + ++ TK D A G L A + +P++ + G+
Sbjct: 193 SASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQ 248
>TIGR_CMR|BA_1718 [details] [associations]
symbol:BA_1718 "flagellar biosynthetic protein FlhF,
putative" species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000897 InterPro:IPR003593 Pfam:PF00448
SMART:SM00382 GO:GO:0005525 GO:GO:0019861 EMBL:AE016879
GenomeReviews:AE016879_GR GO:GO:0017111 GO:GO:0006614 KO:K02404
RefSeq:NP_844153.1 ProteinModelPortal:Q81SE2 DNASU:1086348
EnsemblBacteria:EBBACT00000010753 GeneID:1086348 KEGG:ban:BA_1718
PATRIC:18781034 HOGENOM:HOG000133114 ProtClustDB:PRK06731
Uniprot:Q81SE2
Length = 270
Score = 154 (59.3 bits), Expect = 8.0e-09, P = 8.0e-09
Identities = 45/176 (25%), Positives = 75/176 (42%)
Query: 104 IMFVGLQGSGKTTTCTKYAY-YHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGS 162
I +G G GKTTT K A+ +H KK + D R G QL Q+ K I F
Sbjct: 78 IALIGPTGVGKTTTLAKMAWQFHGKKK-TVGFITTDHSRIGTVQQL-QDYVKT-IGFEVI 134
Query: 163 YTESDPVRIAVEGVETFKKE-NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVM 221
+ + FK+E D I++DT+G++ + + EEM + PD + +
Sbjct: 135 AVRDEAAM--TRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTL 192
Query: 222 DSSIGXXXXXXXXXXXXSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGE 277
+S+ + + ++ TK D A G L A + +P++ + G+
Sbjct: 193 SASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQ 248
>TIGR_CMR|CHY_1010 [details] [associations]
symbol:CHY_1010 "flagellar biosynthesis protein FlhF"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0005198 "structural molecule activity" evidence=ISS]
[GO:0009426 "bacterial-type flagellum basal body, distal rod"
evidence=ISS] InterPro:IPR000897 InterPro:IPR003593 Pfam:PF00448
SMART:SM00382 SMART:SM00962 GO:GO:0005525 GO:GO:0019861
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0017111 GO:GO:0006614
eggNOG:COG1419 KO:K02404 RefSeq:YP_359857.1
ProteinModelPortal:Q3ADC7 STRING:Q3ADC7 GeneID:3728496
KEGG:chy:CHY_1010 PATRIC:21275153 HOGENOM:HOG000254735 OMA:IVESIRI
ProtClustDB:PRK05703 BioCyc:CHYD246194:GJCN-1009-MONOMER
Uniprot:Q3ADC7
Length = 350
Score = 154 (59.3 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 53/205 (25%), Positives = 95/205 (46%)
Query: 107 VGLQGSGKTTTCTKYA---YYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSY 163
+G G GKTTT K A H++K + + DTFR GA +QLK YG Y
Sbjct: 162 IGPTGVGKTTTLAKIAGRLAIHEEKPIR--FITLDTFRVGAVEQLK---------IYGKY 210
Query: 164 TESDPVRIAVEGVETFK---KEN-CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIF 219
+ V++A +E ++ K+N + I +DT+GR ++ +E+ EA + I+
Sbjct: 211 LGTT-VKVAGSPMELWRAVQKQNEGETIFIDTAGRPSKKQNQIQELAGFLEAVKKEKDIY 269
Query: 220 -VMDSSIGXXXXXXXXXXXXSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEH 278
V+ +++ IVTK+D K G ++ + K P++++G G++
Sbjct: 270 LVISATVKPEDAEKIAKDFSPCGFNKFIVTKIDETDKFGVLINLIVKFKKPIVYLGVGQN 329
Query: 279 MDEFEVFDVKPFVSRLLGMGDWSGF 303
+ + ++ P L+ W G+
Sbjct: 330 VPD-DLISATP---ELIVEQVWKGW 350
>UNIPROTKB|Q48GG0 [details] [associations]
symbol:flhF "Flagellar biosynthesis protein FlhF"
species:264730 "Pseudomonas syringae pv. phaseolicola 1448A"
[GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0009288 "bacterial-type flagellum" evidence=ISS] [GO:0009296
"flagellum assembly" evidence=ISS] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR020006 Pfam:PF00448 SMART:SM00382
SMART:SM00962 GO:GO:0005525 GO:GO:0005886 GO:GO:0017111
EMBL:CP000058 GenomeReviews:CP000058_GR GO:GO:0009296 GO:GO:0001539
GO:GO:0009288 GO:GO:0006614 eggNOG:COG1419 KO:K02404
HOGENOM:HOG000254735 ProtClustDB:PRK05703 TIGRFAMs:TIGR03499
OMA:EPRQAWR RefSeq:YP_275523.1 ProteinModelPortal:Q48GG0
STRING:Q48GG0 GeneID:3559389 KEGG:psp:PSPPH_3365 PATRIC:19976136
Uniprot:Q48GG0
Length = 442
Score = 146 (56.5 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 55/209 (26%), Positives = 91/209 (43%)
Query: 92 PSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAY-YHQKKGWKP-ALVCADTFRAGAFDQLK 149
P P + + VI VG G GKTTT K A Y K G + ALV D+FR GA +QLK
Sbjct: 214 PDIEPLE-EGGVIAMVGPAGMGKTTTLAKLAARYVLKYGPQNIALVSMDSFRIGAQEQLK 272
Query: 150 QNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVS 209
+P T DP + V+ +E ++ ++++DT+G + AL ++ ++
Sbjct: 273 TLGRILNVPV----THVDPGQSLVQALEPLLRKR--VVLIDTAGLQASDPALRMQLESLA 326
Query: 210 EATNPDLVIFVMDSSIGXXXXXXXXXXXXSVSVGAVIVTKMDGHAKGGGALSAVAATKSP 269
V+ ++ + I+TK+D A G LS + + P
Sbjct: 327 GRGIKSRNYLVLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELP 386
Query: 270 VIFIGTGEHM-DEFEVFDVKPFVSRLLGM 297
V ++ G + D+ + VSR + +
Sbjct: 387 VAYLTDGPRIPDDLDTPRRHQLVSRAVSV 415
>UNIPROTKB|G3V346 [details] [associations]
symbol:SRP54 "Signal recognition particle 54 kDa protein"
species:9606 "Homo sapiens" [GO:0005525 "GTP binding" evidence=IEA]
[GO:0006614 "SRP-dependent cotranslational protein targeting to
membrane" evidence=IEA] InterPro:IPR013822 Pfam:PF02881
GO:GO:0005525 GO:GO:0006614 SUPFAM:SSF47364 EMBL:AL049776
HGNC:HGNC:11301 ChiTaRS:SRP54 ProteinModelPortal:G3V346 SMR:G3V346
Ensembl:ENST00000554803 ArrayExpress:G3V346 Bgee:G3V346
Uniprot:G3V346
Length = 44
Score = 122 (48.0 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 26/44 (59%), Positives = 34/44 (77%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADV 44
MVLA LG I+ A++ +SNATII+E+VLN L E+ ALL+ADV
Sbjct: 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADV 44
>UNIPROTKB|Q8ECD1 [details] [associations]
symbol:flhF "Flagellar polar localization control system
flagellar assembly determinant GTPase FlhF" species:211586
"Shewanella oneidensis MR-1" [GO:0001539 "ciliary or flagellar
motility" evidence=ISS] [GO:0003674 "molecular_function"
evidence=ND] [GO:0009296 "flagellum assembly" evidence=ISS]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR020006
Pfam:PF00448 SMART:SM00382 SMART:SM00962 GO:GO:0005525
GO:GO:0005886 GO:GO:0019861 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0017111 GO:GO:0009296 GO:GO:0001539 GO:GO:0006614 KO:K02404
HOGENOM:HOG000254735 ProtClustDB:PRK05703 TIGRFAMs:TIGR03499
OMA:EPRQAWR RefSeq:NP_718767.1 ProteinModelPortal:Q8ECD1
GeneID:1170905 KEGG:son:SO_3212 PATRIC:23526108 Uniprot:Q8ECD1
Length = 458
Score = 143 (55.4 bits), Expect = 5.7e-07, P = 5.7e-07
Identities = 51/210 (24%), Positives = 99/210 (47%)
Query: 77 QAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK----YAYYHQKKGWKP 132
+A+ L MLD K+G V+ VG G GKTT+ K +A +H +
Sbjct: 220 RALPQSLANMLDNQGDDIV-KQG--GVVALVGPTGVGKTTSLAKLAARFAAHHGAD--QV 274
Query: 133 ALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTS 192
AL+ D +R GA++QL AT KI G + +E + ++ N L+++DT+
Sbjct: 275 ALITTDHYRIGAYEQL---ATYGKI--MGCPVKQAHDLAELEQI-LYQFRNRKLVLIDTA 328
Query: 193 GRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXS-VSVGAVIVTKMD 251
G +++ L++++ ++ + + +++ S+ G + + V++TK+D
Sbjct: 329 GMGQRDMRLYQQLDNLTANSRIPIRSYLVLSATGQRRVLQDAVNHFKRIPLSGVVLTKLD 388
Query: 252 GHAKGGGALSAVAATKSPVIFIGTGEHMDE 281
GALS + + P+ ++ G+ + E
Sbjct: 389 ESVSLAGALSVLIQSGLPLSYVTDGQRVPE 418
>TIGR_CMR|SO_3212 [details] [associations]
symbol:SO_3212 "flagellar biosynthetic protein FlhF"
species:211586 "Shewanella oneidensis MR-1" [GO:0001539 "ciliary or
flagellar motility" evidence=ISS] [GO:0003674 "molecular_function"
evidence=ND] [GO:0009296 "flagellum assembly" evidence=ISS]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR020006
Pfam:PF00448 SMART:SM00382 SMART:SM00962 GO:GO:0005525
GO:GO:0005886 GO:GO:0019861 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0017111 GO:GO:0009296 GO:GO:0001539 GO:GO:0006614 KO:K02404
HOGENOM:HOG000254735 ProtClustDB:PRK05703 TIGRFAMs:TIGR03499
OMA:EPRQAWR RefSeq:NP_718767.1 ProteinModelPortal:Q8ECD1
GeneID:1170905 KEGG:son:SO_3212 PATRIC:23526108 Uniprot:Q8ECD1
Length = 458
Score = 143 (55.4 bits), Expect = 5.7e-07, P = 5.7e-07
Identities = 51/210 (24%), Positives = 99/210 (47%)
Query: 77 QAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK----YAYYHQKKGWKP 132
+A+ L MLD K+G V+ VG G GKTT+ K +A +H +
Sbjct: 220 RALPQSLANMLDNQGDDIV-KQG--GVVALVGPTGVGKTTSLAKLAARFAAHHGAD--QV 274
Query: 133 ALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTS 192
AL+ D +R GA++QL AT KI G + +E + ++ N L+++DT+
Sbjct: 275 ALITTDHYRIGAYEQL---ATYGKI--MGCPVKQAHDLAELEQI-LYQFRNRKLVLIDTA 328
Query: 193 GRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGXXXXXXXXXXXXS-VSVGAVIVTKMD 251
G +++ L++++ ++ + + +++ S+ G + + V++TK+D
Sbjct: 329 GMGQRDMRLYQQLDNLTANSRIPIRSYLVLSATGQRRVLQDAVNHFKRIPLSGVVLTKLD 388
Query: 252 GHAKGGGALSAVAATKSPVIFIGTGEHMDE 281
GALS + + P+ ++ G+ + E
Sbjct: 389 ESVSLAGALSVLIQSGLPLSYVTDGQRVPE 418
>UNIPROTKB|G3V3L9 [details] [associations]
symbol:SRP54 "Signal recognition particle 54 kDa protein"
species:9606 "Homo sapiens" [GO:0005525 "GTP binding" evidence=IEA]
[GO:0006614 "SRP-dependent cotranslational protein targeting to
membrane" evidence=IEA] InterPro:IPR013822 Pfam:PF02881
GO:GO:0005525 GO:GO:0006614 SUPFAM:SSF47364 EMBL:AL049776
HGNC:HGNC:11301 ChiTaRS:SRP54 ProteinModelPortal:G3V3L9 SMR:G3V3L9
Ensembl:ENST00000556380 ArrayExpress:G3V3L9 Bgee:G3V3L9
Uniprot:G3V3L9
Length = 55
Score = 116 (45.9 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 27/54 (50%), Positives = 39/54 (72%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQT 54
MVLA LG I+ A++ +SNATII+E+VLN L E+ ALL+ D+ F + R +Q+
Sbjct: 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLE-DL-FNMCRHIQS 52
>UNIPROTKB|Q9KQD2 [details] [associations]
symbol:VC_2068 "Flagellar biosynthetic protein FlhF,
putative" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0009296 "flagellum assembly" evidence=ISS] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR020006 Pfam:PF00448 SMART:SM00382
SMART:SM00962 GO:GO:0005525 GO:GO:0005886 GO:GO:0019861
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0017111 GO:GO:0009296
GO:GO:0001539 GO:GO:0006614 HSSP:P83749 KO:K02404
ProtClustDB:PRK05703 TIGRFAMs:TIGR03499 PIR:F82123
RefSeq:NP_231700.1 ProteinModelPortal:Q9KQD2 DNASU:2613448
GeneID:2613448 KEGG:vch:VC2068 PATRIC:20083171 OMA:LCARIHG
Uniprot:Q9KQD2
Length = 495
Score = 133 (51.9 bits), Expect = 8.5e-06, P = 8.5e-06
Identities = 51/192 (26%), Positives = 84/192 (43%)
Query: 97 KKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKP--ALVCADTFRAGAFDQLKQNATK 154
K+G V+ +G G GKTTT K A + ALV DT+R GA +QL
Sbjct: 280 KRG--GVVALLGPTGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLS----- 332
Query: 155 AKIPFYGSYTESDPVRIAVEGVET----FKKENCDLIIVDTSGRHKQEAALFEEMRQVSE 210
YG PVR+A + E ++ N LI+VDT+G +++ L E++ + +
Sbjct: 333 ----IYGRIMGC-PVRVAKDSNELADVIYQLRNRRLILVDTAGMGQRDVRLSEQLDTLMQ 387
Query: 211 ATNPDLVIF-VMDSSIGXXXXXXXXXXXXSVSVGAVIVTKMDGHAKGGGALSAVAATKSP 269
+ + + V+ ++ + + I+TK+D G +S V P
Sbjct: 388 ESGETIHSYLVLPATAQRKVLQETIEHFRRIPLSGCIMTKLDECLSLGEFVSVVVQNALP 447
Query: 270 VIFIGTGEHMDE 281
V +I G+ + E
Sbjct: 448 VAYIANGQRVPE 459
>TIGR_CMR|VC_2068 [details] [associations]
symbol:VC_2068 "flagellar biosynthetic protein FlhF,
putative" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0009296 "flagellum assembly" evidence=ISS] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR020006 Pfam:PF00448 SMART:SM00382
SMART:SM00962 GO:GO:0005525 GO:GO:0005886 GO:GO:0019861
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0017111 GO:GO:0009296
GO:GO:0001539 GO:GO:0006614 HSSP:P83749 KO:K02404
ProtClustDB:PRK05703 TIGRFAMs:TIGR03499 PIR:F82123
RefSeq:NP_231700.1 ProteinModelPortal:Q9KQD2 DNASU:2613448
GeneID:2613448 KEGG:vch:VC2068 PATRIC:20083171 OMA:LCARIHG
Uniprot:Q9KQD2
Length = 495
Score = 133 (51.9 bits), Expect = 8.5e-06, P = 8.5e-06
Identities = 51/192 (26%), Positives = 84/192 (43%)
Query: 97 KKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKP--ALVCADTFRAGAFDQLKQNATK 154
K+G V+ +G G GKTTT K A + ALV DT+R GA +QL
Sbjct: 280 KRG--GVVALLGPTGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLS----- 332
Query: 155 AKIPFYGSYTESDPVRIAVEGVET----FKKENCDLIIVDTSGRHKQEAALFEEMRQVSE 210
YG PVR+A + E ++ N LI+VDT+G +++ L E++ + +
Sbjct: 333 ----IYGRIMGC-PVRVAKDSNELADVIYQLRNRRLILVDTAGMGQRDVRLSEQLDTLMQ 387
Query: 211 ATNPDLVIF-VMDSSIGXXXXXXXXXXXXSVSVGAVIVTKMDGHAKGGGALSAVAATKSP 269
+ + + V+ ++ + + I+TK+D G +S V P
Sbjct: 388 ESGETIHSYLVLPATAQRKVLQETIEHFRRIPLSGCIMTKLDECLSLGEFVSVVVQNALP 447
Query: 270 VIFIGTGEHMDE 281
V +I G+ + E
Sbjct: 448 VAYIANGQRVPE 459
>UNIPROTKB|Q485K6 [details] [associations]
symbol:flhF "Flagellar biosynthetic protein FlhF"
species:167879 "Colwellia psychrerythraea 34H" [GO:0001539 "ciliary
or flagellar motility" evidence=ISS] [GO:0003924 "GTPase activity"
evidence=ISS] [GO:0006184 "GTP catabolic process" evidence=ISS]
[GO:0009296 "flagellum assembly" evidence=ISS] InterPro:IPR000897
InterPro:IPR003593 InterPro:IPR020006 Pfam:PF00448 SMART:SM00382
SMART:SM00962 GO:GO:0005525 GO:GO:0005886 GO:GO:0019861
GO:GO:0003924 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0009296
GO:GO:0001539 GO:GO:0006614 eggNOG:COG1419 KO:K02404
HOGENOM:HOG000254735 ProtClustDB:PRK05703 TIGRFAMs:TIGR03499
RefSeq:YP_268259.1 ProteinModelPortal:Q485K6 STRING:Q485K6
GeneID:3520893 KEGG:cps:CPS_1517 PATRIC:21466241 OMA:EPRQAWR
BioCyc:CPSY167879:GI48-1598-MONOMER Uniprot:Q485K6
Length = 513
Score = 116 (45.9 bits), Expect = 0.00070, P = 0.00070
Identities = 48/182 (26%), Positives = 79/182 (43%)
Query: 103 VIMFVGLQGSGKTTTCTKYAY-YHQKKGW-KPALVCADTFRAGAFDQLKQNATKAKIPFY 160
V+ VG G GKTTT K A + Q G + AL+ DTFR F+QL AT KI
Sbjct: 298 VVALVGPTGVGKTTTIAKLAAGFSQVHGSDQVALISTDTFRIAGFEQL---ATYGKIIGC 354
Query: 161 GSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQ-VSEATNPDLVIF 219
D + + ++ + K+ LI++DT+G +++ L E++ VS A
Sbjct: 355 QVSLAKDSQALDIL-LQQYSKKK--LILIDTAGMGQRDMRLAEQLTALVSNARVRIRNYL 411
Query: 220 VMDSSIGXXXXXXXXXXXXSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHM 279
V+ ++ V + I TK+D G ++ P+ ++ G+ +
Sbjct: 412 VLAANTQQGVMQENVDRFKKVPLSGCIYTKLDESISIGEIITTSIQNGLPIGYLTDGQRV 471
Query: 280 DE 281
E
Sbjct: 472 PE 473
>TIGR_CMR|CPS_1517 [details] [associations]
symbol:CPS_1517 "flagellar biosynthetic protein FlhF"
species:167879 "Colwellia psychrerythraea 34H" [GO:0001539 "ciliary
or flagellar motility" evidence=ISS] [GO:0003924 "GTPase activity"
evidence=ISS] [GO:0009296 "flagellum assembly" evidence=ISS]
InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR020006
Pfam:PF00448 SMART:SM00382 SMART:SM00962 GO:GO:0005525
GO:GO:0005886 GO:GO:0019861 GO:GO:0003924 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0009296 GO:GO:0001539 GO:GO:0006614
eggNOG:COG1419 KO:K02404 HOGENOM:HOG000254735 ProtClustDB:PRK05703
TIGRFAMs:TIGR03499 RefSeq:YP_268259.1 ProteinModelPortal:Q485K6
STRING:Q485K6 GeneID:3520893 KEGG:cps:CPS_1517 PATRIC:21466241
OMA:EPRQAWR BioCyc:CPSY167879:GI48-1598-MONOMER Uniprot:Q485K6
Length = 513
Score = 116 (45.9 bits), Expect = 0.00070, P = 0.00070
Identities = 48/182 (26%), Positives = 79/182 (43%)
Query: 103 VIMFVGLQGSGKTTTCTKYAY-YHQKKGW-KPALVCADTFRAGAFDQLKQNATKAKIPFY 160
V+ VG G GKTTT K A + Q G + AL+ DTFR F+QL AT KI
Sbjct: 298 VVALVGPTGVGKTTTIAKLAAGFSQVHGSDQVALISTDTFRIAGFEQL---ATYGKIIGC 354
Query: 161 GSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQ-VSEATNPDLVIF 219
D + + ++ + K+ LI++DT+G +++ L E++ VS A
Sbjct: 355 QVSLAKDSQALDIL-LQQYSKKK--LILIDTAGMGQRDMRLAEQLTALVSNARVRIRNYL 411
Query: 220 VMDSSIGXXXXXXXXXXXXSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHM 279
V+ ++ V + I TK+D G ++ P+ ++ G+ +
Sbjct: 412 VLAANTQQGVMQENVDRFKKVPLSGCIYTKLDESISIGEIITTSIQNGLPIGYLTDGQRV 471
Query: 280 DE 281
E
Sbjct: 472 PE 473
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.135 0.389 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 344 332 0.00090 116 3 11 22 0.38 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 94
No. of states in DFA: 605 (64 KB)
Total size of DFA: 210 KB (2118 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 25.22u 0.11s 25.33t Elapsed: 00:00:01
Total cpu time: 25.23u 0.11s 25.34t Elapsed: 00:00:01
Start: Sat May 11 03:43:08 2013 End: Sat May 11 03:43:09 2013