BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019214
(344 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P49972|SR542_SOLLC Signal recognition particle 54 kDa protein 2 OS=Solanum
lycopersicum PE=2 SV=1
Length = 499
Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/334 (95%), Positives = 332/334 (99%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVLA+LGGSISRA+QQMSNATIIDEKVLNECLNEITRALLQADVQFKLVR+M TNIKKIV
Sbjct: 1 MVLAELGGSISRALQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVRDMTTNIKKIV 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
NLDDLAAGHNKRRIIQQA+FNELCK+LDPGKPSFTPKKGKPS++MFVGLQGSGKTTTCTK
Sbjct: 61 NLDDLAAGHNKRRIIQQAVFNELCKILDPGKPSFTPKKGKPSIVMFVGLQGSGKTTTCTK 120
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPV+IAV+GVETFK
Sbjct: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVDGVETFK 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV 240
KENCDLIIVDTSGRHKQEAALFEEMRQV+EAT PDLVIFVMDSSIGQAAFDQAQAFKQSV
Sbjct: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSV 240
Query: 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300
+VGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW
Sbjct: 241 AVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300
Query: 301 SGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMF 334
SGFMDKIHEVVPMDQQPELLQKLSEG+FTLRIM+
Sbjct: 301 SGFMDKIHEVVPMDQQPELLQKLSEGHFTLRIMY 334
>sp|P49971|SR541_SOLLC Signal recognition particle 54 kDa protein 1 OS=Solanum
lycopersicum PE=3 SV=1
Length = 496
Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/335 (91%), Positives = 326/335 (97%), Gaps = 1/335 (0%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVLAQLGGSISRA+QQMSNATIIDEKVLNECLNEITRALLQADVQFKLVR+M TNIKKIV
Sbjct: 1 MVLAQLGGSISRALQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVRDMSTNIKKIV 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
NL+DLAAGHNKRRIIQQA++NELCK+LDPGKP+FT KKGKPSV+MFVGLQGSGKTTTCTK
Sbjct: 61 NLEDLAAGHNKRRIIQQAVYNELCKILDPGKPAFTLKKGKPSVVMFVGLQGSGKTTTCTK 120
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGS-YTESDPVRIAVEGVETF 179
YAY+HQK+GWKPALVCADTFRAGAFDQLKQNATKAKIPFYGS YTESDPV+IAV+GVETF
Sbjct: 121 YAYHHQKRGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSSYTESDPVKIAVDGVETF 180
Query: 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQS 239
KKENCDLIIVDTSGRHKQEAALFEEMRQVSEA PDLVIFVMDSSIGQAAFDQAQAF+QS
Sbjct: 181 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEAQKPDLVIFVMDSSIGQAAFDQAQAFRQS 240
Query: 240 VSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGD 299
V+VGAVIVTKMDGHAKGGGALS VAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGD
Sbjct: 241 VAVGAVIVTKMDGHAKGGGALSRVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGD 300
Query: 300 WSGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMF 334
SG ++KI +VVPMDQQPELLQKLSEG+FTLRIM+
Sbjct: 301 LSGLVNKIQDVVPMDQQPELLQKLSEGHFTLRIMY 335
>sp|P49967|SR543_ARATH Signal recognition particle 54 kDa protein 3 OS=Arabidopsis
thaliana GN=SRP-54C PE=2 SV=2
Length = 495
Score = 639 bits (1649), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/344 (88%), Positives = 329/344 (95%), Gaps = 2/344 (0%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVLA+LGG I+RAIQQMSN TIIDEK LNECLNEITRALLQ+DV F LV+EMQ+NIKKIV
Sbjct: 1 MVLAELGGRITRAIQQMSNVTIIDEKALNECLNEITRALLQSDVSFPLVKEMQSNIKKIV 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
NL+DLAAGHNKRRII+QAIF+ELCKMLDPGKP+F PKK K SV+MFVGLQG+GKTTTCTK
Sbjct: 61 NLEDLAAGHNKRRIIEQAIFSELCKMLDPGKPAFAPKKAKASVVMFVGLQGAGKTTTCTK 120
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
YAYYHQKKG+KPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPV+IAVEGV+TFK
Sbjct: 121 YAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDTFK 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV 240
KENCDLIIVDTSGRHKQEA+LFEEMRQV+EAT PDLVIFVMDSSIGQAAFDQAQAFKQSV
Sbjct: 181 KENCDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSV 240
Query: 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300
+VGAVI+TKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW
Sbjct: 241 AVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300
Query: 301 SGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMFSLCFQDSVLN 344
SGF+DK+ EVVP DQQPELL+KLS+GNFTLRIM+ FQ+ +LN
Sbjct: 301 SGFVDKLQEVVPKDQQPELLEKLSQGNFTLRIMYD-QFQN-ILN 342
>sp|P49969|SR542_HORVU Signal recognition particle 54 kDa protein 2 OS=Hordeum vulgare
GN=SRP54-2 PE=2 SV=1
Length = 497
Score = 616 bits (1589), Expect = e-176, Method: Compositional matrix adjust.
Identities = 287/334 (85%), Positives = 316/334 (94%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVLAQLGGSISRA+ QMSNAT+IDEKVL ECLNEI+RALLQ+DVQFK+VR+MQTNI+KIV
Sbjct: 1 MVLAQLGGSISRALAQMSNATVIDEKVLGECLNEISRALLQSDVQFKMVRDMQTNIRKIV 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
NL+ LAAG NKRRIIQQA+F ELC MLDPGKP+FTPKKGKPSV+MFVGLQGSGKTTTCTK
Sbjct: 61 NLETLAAGTNKRRIIQQAVFTELCNMLDPGKPAFTPKKGKPSVVMFVGLQGSGKTTTCTK 120
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
YAYYHQ+KG+KP+LVCADTFRAGAFDQLKQNATKAKIPFYGSY ESDPV+IAVEG+E F+
Sbjct: 121 YAYYHQRKGFKPSLVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGLERFR 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV 240
KEN DLII+DTSGRHKQEAALFEEMRQV+EAT PDLVIFVMD SIGQAAFDQAQAFKQS
Sbjct: 181 KENSDLIIIDTSGRHKQEAALFEEMRQVAEATKPDLVIFVMDGSIGQAAFDQAQAFKQSA 240
Query: 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300
SVGAVI+TK+DGHAKGGGALSAVAATKSPVIFIGTGEH+DEFE+FDVKPFVSRLLGMGD
Sbjct: 241 SVGAVIITKLDGHAKGGGALSAVAATKSPVIFIGTGEHIDEFEIFDVKPFVSRLLGMGDL 300
Query: 301 SGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMF 334
SG MDKI +V+P DQQPELL KL+EG FTLR+++
Sbjct: 301 SGLMDKIQDVMPADQQPELLAKLAEGTFTLRLLY 334
>sp|P49968|SR541_HORVU Signal recognition particle 54 kDa protein 1 OS=Hordeum vulgare
GN=SRP54-1 PE=2 SV=1
Length = 497
Score = 613 bits (1581), Expect = e-175, Method: Compositional matrix adjust.
Identities = 286/334 (85%), Positives = 315/334 (94%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVLAQLGGSISRA+ QMSNAT+IDEKVL ECLNEI+RALLQ+DVQFK+VR+MQTNI+KIV
Sbjct: 1 MVLAQLGGSISRALAQMSNATVIDEKVLGECLNEISRALLQSDVQFKMVRDMQTNIRKIV 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
NL+ LAAG NKRRIIQQA+F ELC MLDPGKP+FT KKGKPSV+MFVGLQGSGKTTTCTK
Sbjct: 61 NLETLAAGTNKRRIIQQAVFTELCNMLDPGKPAFTTKKGKPSVVMFVGLQGSGKTTTCTK 120
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
YAYYHQ+KG+KP+LVCADTFRAGAFDQLKQNATKAKIPFYGSY ESDPV+IAVEG+E F+
Sbjct: 121 YAYYHQRKGFKPSLVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGLERFR 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV 240
KEN DLII+DTSGRHKQEAALFEEMRQV+EAT PDLVIFVMD SIGQAAFDQAQAFKQS
Sbjct: 181 KENSDLIIIDTSGRHKQEAALFEEMRQVAEATKPDLVIFVMDGSIGQAAFDQAQAFKQSA 240
Query: 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300
SVGAVI+TK+DGHAKGGGALSAVAATKSPVIFIGTGEH+DEFE+FDVKPFVSRLLGMGD
Sbjct: 241 SVGAVIITKLDGHAKGGGALSAVAATKSPVIFIGTGEHIDEFEIFDVKPFVSRLLGMGDL 300
Query: 301 SGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMF 334
SG MDKI +V+P DQQPELL KL+EG FTLR+++
Sbjct: 301 SGLMDKIQDVMPADQQPELLAKLAEGTFTLRLLY 334
>sp|P37106|SR541_ARATH Signal recognition particle 54 kDa protein 1 OS=Arabidopsis
thaliana GN=SRP-54A PE=2 SV=1
Length = 479
Score = 600 bits (1548), Expect = e-171, Method: Compositional matrix adjust.
Identities = 284/334 (85%), Positives = 311/334 (93%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVLA+LGG I+RAIQQM+N TIIDEKVLN+ LNEITRALLQ+DV F LV +MQTNIKKIV
Sbjct: 1 MVLAELGGRITRAIQQMNNVTIIDEKVLNDFLNEITRALLQSDVSFGLVEKMQTNIKKIV 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
NLDDLAAGHNKR II+QAIF ELC+MLDPGKP+F PKK KPSV+MFVGLQG+GKTTTCTK
Sbjct: 61 NLDDLAAGHNKRLIIEQAIFKELCRMLDPGKPAFAPKKAKPSVVMFVGLQGAGKTTTCTK 120
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
YAYYHQKKG+K ALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPV+IAVEGV+ FK
Sbjct: 121 YAYYHQKKGYKAALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDRFK 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV 240
KE CDLIIVDTSGRHKQ A+LFEEMRQV+EAT PDLVIFVMDSSIGQAAF+QA+AFK++V
Sbjct: 181 KEKCDLIIVDTSGRHKQAASLFEEMRQVAEATEPDLVIFVMDSSIGQAAFEQAEAFKETV 240
Query: 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300
SVGAVI+TKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLG GDW
Sbjct: 241 SVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGKGDW 300
Query: 301 SGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMF 334
SG +DK+ EVVP D Q EL++ LS+GNFTLR M+
Sbjct: 301 SGLVDKLQEVVPKDLQNELVENLSQGNFTLRSMY 334
>sp|P49966|SR542_ARATH Signal recognition particle 54 kDa protein 2 OS=Arabidopsis
thaliana GN=SRP-54B PE=3 SV=2
Length = 497
Score = 558 bits (1438), Expect = e-158, Method: Compositional matrix adjust.
Identities = 267/336 (79%), Positives = 298/336 (88%), Gaps = 2/336 (0%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVLA+LGG I AIQ+M+N TIIDEK LN+CLNEITRALLQ+DV F LV+EMQTNIKKIV
Sbjct: 1 MVLAELGGRIMSAIQKMNNVTIIDEKALNDCLNEITRALLQSDVSFPLVKEMQTNIKKIV 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGS--GKTTTC 118
NL+DLAAGHNKRRII+QAIF+ELCKMLDPGK +F PKK KPSV+MFVGLQG K
Sbjct: 61 NLEDLAAGHNKRRIIEQAIFSELCKMLDPGKSAFAPKKAKPSVVMFVGLQGEVLEKPQLV 120
Query: 119 TKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178
++KG+KPALVCADTFRAGAFDQLKQNATK+KIP+YGSYT SDPV+IAVEGV+
Sbjct: 121 PSMLIIIRRKGYKPALVCADTFRAGAFDQLKQNATKSKIPYYGSYTGSDPVKIAVEGVDR 180
Query: 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQ 238
FKKENCDLIIVDTSGRHKQ+A+LFEEMRQ+SEAT PDLVIFVMDSSIGQ AF+QA+AFKQ
Sbjct: 181 FKKENCDLIIVDTSGRHKQQASLFEEMRQISEATKPDLVIFVMDSSIGQTAFEQARAFKQ 240
Query: 239 SVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMG 298
+V+VGAVI+TKMDGHAKGGG LSAVAATKSPVIFIGTGEHMDEFEVFD KPFVSRLLG G
Sbjct: 241 TVAVGAVIITKMDGHAKGGGTLSAVAATKSPVIFIGTGEHMDEFEVFDAKPFVSRLLGNG 300
Query: 299 DWSGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMF 334
D SGF++K+ EVVP DQQPELL+ LS G FTLRIM+
Sbjct: 301 DMSGFVNKLQEVVPKDQQPELLEMLSHGKFTLRIMY 336
>sp|P49970|SR543_HORVU Signal recognition particle 54 kDa protein 3 OS=Hordeum vulgare
GN=SRP54-3 PE=2 SV=1
Length = 493
Score = 546 bits (1406), Expect = e-154, Method: Compositional matrix adjust.
Identities = 256/334 (76%), Positives = 298/334 (89%), Gaps = 1/334 (0%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVLA +GGSISRA+ MS+A ++DE VL ECLNEI RAL+Q+DV+FK V ++Q NI+K V
Sbjct: 1 MVLADVGGSISRALA-MSSAAVVDESVLRECLNEIARALMQSDVRFKTVCDLQANIRKTV 59
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
NL+ LAAG NKRRII+ ++ ELCKMLD GKP+F PKKGKP+V+MFVGLQGSGKTTTCTK
Sbjct: 60 NLEALAAGTNKRRIIETSVGKELCKMLDTGKPAFVPKKGKPNVVMFVGLQGSGKTTTCTK 119
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
YA+YHQ+KG+KP+LVCADTFRAGAFDQLKQNATKAKIPFYGSY ESDPV+IAVEG+E F+
Sbjct: 120 YAHYHQRKGFKPSLVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGLEKFR 179
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV 240
+E DLII+DTSGRH QEAALFEEMRQV+EAT PDLVIFVMD SIGQAAFDQAQAFKQS
Sbjct: 180 QEKSDLIIIDTSGRHMQEAALFEEMRQVAEATKPDLVIFVMDGSIGQAAFDQAQAFKQSA 239
Query: 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300
SVGAVIVTK+DGHAKGGGALSAVAATKSPVIFIGTGEH+D+F+VF+V+PFV+RLLG GD
Sbjct: 240 SVGAVIVTKLDGHAKGGGALSAVAATKSPVIFIGTGEHIDDFDVFNVEPFVARLLGRGDL 299
Query: 301 SGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMF 334
G +DK+ +VP DQQ EL+ KLSEG FTLR+++
Sbjct: 300 PGLIDKMESIVPADQQSELVAKLSEGAFTLRLLY 333
>sp|P14576|SRP54_MOUSE Signal recognition particle 54 kDa protein OS=Mus musculus GN=Srp54
PE=1 SV=2
Length = 504
Score = 460 bits (1184), Expect = e-129, Method: Compositional matrix adjust.
Identities = 217/334 (64%), Positives = 273/334 (81%), Gaps = 1/334 (0%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVLA LG I+ A++ +SNATII+E+VLN L E+ ALL+ADV KLV++++ N+K +
Sbjct: 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
+L+++A+G NKR++IQ A+F EL K++DPG ++TP KGK +VIMFVGLQGSGKTTTC+K
Sbjct: 61 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK 120
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
AYY+Q+KGWK L+CADTFRAGAFDQLKQNATKA+IPFYGSYTE DPV IA EGVE FK
Sbjct: 121 LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV 240
EN ++IIVDTSGRHKQE +LFEEM QVS A PD +++VMD+SIGQA QA+AFK V
Sbjct: 181 NENFEIIIVDTSGRHKQEDSLFEEMLQVSNAIQPDNIVYVMDASIGQACEAQAKAFKDKV 240
Query: 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300
V +VIVTK+DGHAKGGGALSAVAATKSP+IFIGTGEH+D+FE F +PF+S+LLGMGD
Sbjct: 241 DVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDI 300
Query: 301 SGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMF 334
G +DK++E + +D L++KL G FTLR M+
Sbjct: 301 EGLIDKVNE-LKLDDNEALIEKLKHGQFTLRDMY 333
>sp|Q5R4R6|SRP54_PONAB Signal recognition particle 54 kDa protein OS=Pongo abelii GN=SRP54
PE=2 SV=1
Length = 504
Score = 459 bits (1181), Expect = e-128, Method: Compositional matrix adjust.
Identities = 216/334 (64%), Positives = 273/334 (81%), Gaps = 1/334 (0%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVLA LG I+ A++ +SNATII+E+VLN L E+ ALL+ADV KLV++++ N+K +
Sbjct: 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
+L+++A+G NKR++IQ A+F EL K++DPG ++TP KGK +VIMFVGLQGSGKTTTC+K
Sbjct: 61 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK 120
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
AYY+Q+KGWK L+CADTFRAGAFDQLKQNATKA+IPFYGSYTE DPV IA EGVE FK
Sbjct: 121 LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV 240
EN ++IIVDTSGRHKQE +LFEEM QV+ A PD +++VMD+SIGQA QA+AFK V
Sbjct: 181 NENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKV 240
Query: 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300
V +VIVTK+DGHAKGGGALSAVAATKSP+IFIGTGEH+D+FE F +PF+S+LLGMGD
Sbjct: 241 DVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDI 300
Query: 301 SGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMF 334
G +DK++E + +D L++KL G FTLR M+
Sbjct: 301 EGLIDKVNE-LKLDDNEALIEKLKHGQFTLRDMY 333
>sp|Q4R965|SRP54_MACFA Signal recognition particle 54 kDa protein OS=Macaca fascicularis
GN=SRP54 PE=2 SV=1
Length = 504
Score = 459 bits (1181), Expect = e-128, Method: Compositional matrix adjust.
Identities = 216/334 (64%), Positives = 273/334 (81%), Gaps = 1/334 (0%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVLA LG I+ A++ +SNATII+E+VLN L E+ ALL+ADV KLV++++ N+K +
Sbjct: 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
+L+++A+G NKR++IQ A+F EL K++DPG ++TP KGK +VIMFVGLQGSGKTTTC+K
Sbjct: 61 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK 120
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
AYY+Q+KGWK L+CADTFRAGAFDQLKQNATKA+IPFYGSYTE DPV IA EGVE FK
Sbjct: 121 LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV 240
EN ++IIVDTSGRHKQE +LFEEM QV+ A PD +++VMD+SIGQA QA+AFK V
Sbjct: 181 NENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKV 240
Query: 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300
V +VIVTK+DGHAKGGGALSAVAATKSP+IFIGTGEH+D+FE F +PF+S+LLGMGD
Sbjct: 241 DVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDI 300
Query: 301 SGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMF 334
G +DK++E + +D L++KL G FTLR M+
Sbjct: 301 EGLIDKVNE-LKLDDNEALIEKLKHGQFTLRDMY 333
>sp|P61011|SRP54_HUMAN Signal recognition particle 54 kDa protein OS=Homo sapiens GN=SRP54
PE=1 SV=1
Length = 504
Score = 459 bits (1181), Expect = e-128, Method: Compositional matrix adjust.
Identities = 216/334 (64%), Positives = 273/334 (81%), Gaps = 1/334 (0%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVLA LG I+ A++ +SNATII+E+VLN L E+ ALL+ADV KLV++++ N+K +
Sbjct: 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
+L+++A+G NKR++IQ A+F EL K++DPG ++TP KGK +VIMFVGLQGSGKTTTC+K
Sbjct: 61 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK 120
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
AYY+Q+KGWK L+CADTFRAGAFDQLKQNATKA+IPFYGSYTE DPV IA EGVE FK
Sbjct: 121 LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV 240
EN ++IIVDTSGRHKQE +LFEEM QV+ A PD +++VMD+SIGQA QA+AFK V
Sbjct: 181 NENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKV 240
Query: 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300
V +VIVTK+DGHAKGGGALSAVAATKSP+IFIGTGEH+D+FE F +PF+S+LLGMGD
Sbjct: 241 DVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDI 300
Query: 301 SGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMF 334
G +DK++E + +D L++KL G FTLR M+
Sbjct: 301 EGLIDKVNE-LKLDDNEALIEKLKHGQFTLRDMY 333
>sp|P61010|SRP54_CANFA Signal recognition particle 54 kDa protein OS=Canis familiaris
GN=SRP54 PE=1 SV=1
Length = 504
Score = 459 bits (1181), Expect = e-128, Method: Compositional matrix adjust.
Identities = 216/334 (64%), Positives = 273/334 (81%), Gaps = 1/334 (0%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVLA LG I+ A++ +SNATII+E+VLN L E+ ALL+ADV KLV++++ N+K +
Sbjct: 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
+L+++A+G NKR++IQ A+F EL K++DPG ++TP KGK +VIMFVGLQGSGKTTTC+K
Sbjct: 61 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK 120
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
AYY+Q+KGWK L+CADTFRAGAFDQLKQNATKA+IPFYGSYTE DPV IA EGVE FK
Sbjct: 121 LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV 240
EN ++IIVDTSGRHKQE +LFEEM QV+ A PD +++VMD+SIGQA QA+AFK V
Sbjct: 181 NENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKV 240
Query: 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300
V +VIVTK+DGHAKGGGALSAVAATKSP+IFIGTGEH+D+FE F +PF+S+LLGMGD
Sbjct: 241 DVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDI 300
Query: 301 SGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMF 334
G +DK++E + +D L++KL G FTLR M+
Sbjct: 301 EGLIDKVNE-LKLDDNEALIEKLKHGQFTLRDMY 333
>sp|Q2T9U1|SRP54_BOVIN Signal recognition particle 54 kDa protein OS=Bos taurus GN=SRP54
PE=2 SV=1
Length = 504
Score = 459 bits (1181), Expect = e-128, Method: Compositional matrix adjust.
Identities = 216/334 (64%), Positives = 273/334 (81%), Gaps = 1/334 (0%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVLA LG I+ A++ +SNATII+E+VLN L E+ ALL+ADV KLV++++ N+K +
Sbjct: 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
+L+++A+G NKR++IQ A+F EL K++DPG ++TP KGK +VIMFVGLQGSGKTTTC+K
Sbjct: 61 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK 120
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
AYY+Q+KGWK L+CADTFRAGAFDQLKQNATKA+IPFYGSYTE DPV IA EGVE FK
Sbjct: 121 LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV 240
EN ++IIVDTSGRHKQE +LFEEM QV+ A PD +++VMD+SIGQA QA+AFK V
Sbjct: 181 NENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKV 240
Query: 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300
V +VIVTK+DGHAKGGGALSAVAATKSP+IFIGTGEH+D+FE F +PF+S+LLGMGD
Sbjct: 241 DVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDI 300
Query: 301 SGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMF 334
G +DK++E + +D L++KL G FTLR M+
Sbjct: 301 EGLIDKVNE-LKLDDNEALIEKLKHGQFTLRDMY 333
>sp|Q6AYB5|SRP54_RAT Signal recognition particle 54 kDa protein OS=Rattus norvegicus
GN=Srp54 PE=2 SV=1
Length = 504
Score = 458 bits (1179), Expect = e-128, Method: Compositional matrix adjust.
Identities = 216/334 (64%), Positives = 273/334 (81%), Gaps = 1/334 (0%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVLA LG I+ A++ +SNATII+E+VLN L E+ ALL+ADV KLV++++ N+K +
Sbjct: 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
+L+++A+G NKR++IQ A+F EL K++DPG ++TP KGK +VIMFVGLQGSGKTTTC+K
Sbjct: 61 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK 120
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
AY++Q+KGWK L+CADTFRAGAFDQLKQNATKA+IPFYGSYTE DPV IA EGVE FK
Sbjct: 121 LAYFYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV 240
EN ++IIVDTSGRHKQE +LFEEM QVS A PD +++VMD+SIGQA QA+AFK V
Sbjct: 181 NENFEIIIVDTSGRHKQEDSLFEEMLQVSNAIQPDNIVYVMDASIGQACEAQAKAFKDKV 240
Query: 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300
V +VIVTK+DGHAKGGGALSAVAATKSP+IFIGTGEH+D+FE F +PF+S+LLGMGD
Sbjct: 241 DVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDI 300
Query: 301 SGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMF 334
G +DK++E + +D L++KL G FTLR M+
Sbjct: 301 EGLIDKVNE-LKLDDNEALIEKLKHGQFTLRDMY 333
>sp|Q8MZJ6|SRP54_GEOCY Signal recognition particle 54 kDa protein OS=Geodia cydonium
GN=SRP54 PE=2 SV=1
Length = 499
Score = 443 bits (1139), Expect = e-123, Method: Compositional matrix adjust.
Identities = 215/334 (64%), Positives = 266/334 (79%), Gaps = 2/334 (0%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVLA LG I+ A+ T+I+E+VL L EI ALL+ADV KLV +++ N++ +
Sbjct: 1 MVLADLGRKITTALLP-RQRTVINEEVLQAMLKEICTALLEADVNVKLVGKLRQNVRAAI 59
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
+ +D+ AG +KRRIIQ ++FNELCK+LDPG P + P KG +VIMFVGLQGSGKTTTCTK
Sbjct: 60 DFEDMGAGLSKRRIIQTSVFNELCKLLDPGVPVWHPTKGHSNVIMFVGLQGSGKTTTCTK 119
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
AY++QKKGWK LVCADTFRAGAFDQLKQNATKA++PFYGSYTE DPV IA EGVE FK
Sbjct: 120 LAYHYQKKGWKTCLVCADTFRAGAFDQLKQNATKARVPFYGSYTEMDPVVIAQEGVEKFK 179
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV 240
+++ ++IIVDTSGRHKQE +LFEEM QVS+A +PD +IFVMD +IGQA QA+AFK+ V
Sbjct: 180 EDSFEVIIVDTSGRHKQEESLFEEMLQVSQAIDPDNIIFVMDGTIGQACESQARAFKEKV 239
Query: 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300
V +VIVTK+DGHAKGGGALSAVAAT+SP+IFIGTGEH+DE E F KPFVS+LLGMGD
Sbjct: 240 DVASVIVTKLDGHAKGGGALSAVAATRSPIIFIGTGEHIDEMEPFKTKPFVSKLLGMGDL 299
Query: 301 SGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMF 334
G M+K+ + + +D+ EL+ KL G FTLR M+
Sbjct: 300 EGLMEKVSD-LKLDENEELMDKLKHGQFTLRDMY 332
>sp|Q75K18|SRP54_DICDI Signal recognition particle 54 kDa protein OS=Dictyostelium
discoideum GN=srp54 PE=1 SV=1
Length = 542
Score = 405 bits (1040), Expect = e-112, Method: Compositional matrix adjust.
Identities = 187/331 (56%), Positives = 256/331 (77%), Gaps = 2/331 (0%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVLA LG +S A++ ++ TI++E +N+ L E+ AL ++DV L+ +M+ NIK +
Sbjct: 1 MVLADLGNQLSSALRSLNETTIVNEDTINQLLKEVGNALSKSDVSMSLIIQMRKNIKDKI 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
LD +AAG NKR+II+Q +F+EL ++LDPG P + P KGK +++MFVGLQG+GKTT+ TK
Sbjct: 61 KLDQMAAGLNKRKIIKQVVFDELIRLLDPGVPLWKPTKGKSNIVMFVGLQGAGKTTSVTK 120
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
AY+++KKG+ A+VCADTFRAGAFDQ++ NA KAKI +YGS TE DPV +A GV+ FK
Sbjct: 121 LAYFYKKKGFSTAIVCADTFRAGAFDQVRHNAAKAKIHYYGSETEKDPVVVARTGVDIFK 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV 240
K+ ++IIVDTSGRHKQ++ LFEEM+Q+ A PD IFVMDSSIGQAA++QA AF+ SV
Sbjct: 181 KDGTEIIIVDTSGRHKQDSELFEEMKQIETAVKPDNCIFVMDSSIGQAAYEQATAFRSSV 240
Query: 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300
VG++I+TKMDG++ GGGA+SAVAAT +P+IFIGTGEH+ + E+FD FVS+LLG GD
Sbjct: 241 KVGSIIITKMDGNSMGGGAISAVAATNTPIIFIGTGEHLTDLELFDPSTFVSKLLGYGDM 300
Query: 301 SGFMDKIHEVVPMDQQPELLQKLSEGNFTLR 331
G ++KI EV+P D L+++++G FTLR
Sbjct: 301 KGMLEKIKEVIPEDSTS--LKEIAQGKFTLR 329
>sp|O15821|SRP54_ENTHI Signal recognition particle 54 kDa protein OS=Entamoeba histolytica
PE=3 SV=1
Length = 487
Score = 378 bits (970), Expect = e-104, Method: Compositional matrix adjust.
Identities = 178/331 (53%), Positives = 246/331 (74%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVL+QLG S+ A+++M+++T++DE+V+N L EI +LL DV +R+M NIKK +
Sbjct: 1 MVLSQLGSSLVTALRKMTSSTVVDEEVINTLLKEIETSLLGEDVNPIFIRQMVNNIKKKI 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
N +D+ G +KR++I+ ++F EL ++DP +F PKKGK V+M VGLQG+GKTTT TK
Sbjct: 61 NSEDIPDGIDKRKLIKDSVFEELINLVDPKTEAFKPKKGKTCVLMMVGLQGAGKTTTITK 120
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
A Y++ +G+KPA+V ADTFRAGA++QL+ NA +A +PF+G ESDPV++A EGV TF+
Sbjct: 121 LALYYKNRGYKPAVVGADTFRAGAYEQLQMNAKRAGVPFFGIKEESDPVKVASEGVRTFR 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV 240
KE D+I+VDTSGRHKQ+ LF+EM+ V +A PD +IFVMD +IGQAAF QA+AFK +V
Sbjct: 181 KEKNDIILVDTSGRHKQDKELFKEMQSVRDAIKPDSIIFVMDGAIGQAAFGQAKAFKDAV 240
Query: 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300
VG+VI+TK+DGH+ GGGALSAVAATKSP+IFIGTGE ++E E FD + FV +LLGMGD
Sbjct: 241 EVGSVIITKLDGHSNGGGALSAVAATKSPIIFIGTGEKVNEIEEFDAESFVRQLLGMGDL 300
Query: 301 SGFMDKIHEVVPMDQQPELLQKLSEGNFTLR 331
G + + +++ L EG T+R
Sbjct: 301 KGIAKLAKDFAENAEYKTMVKHLQEGTLTVR 331
>sp|P21565|SRP54_SCHPO Signal recognition particle 54 kDa protein homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=srp54 PE=1 SV=1
Length = 522
Score = 372 bits (955), Expect = e-102, Method: Compositional matrix adjust.
Identities = 182/331 (54%), Positives = 254/331 (76%), Gaps = 2/331 (0%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MV A LG ++ A+ S AT ++E++++ L I ALL+ DV +LV+E+++NIKK +
Sbjct: 1 MVFADLGRRLNSALGDFSKATSVNEELVDTLLKNICTALLETDVNVRLVQELRSNIKKKI 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
N+ L G N +RI+Q+A+F+ELC ++DP +FTPKKG+PSVIM VGLQGSGKTTTC+K
Sbjct: 61 NVSTLPQGINGKRIVQKAVFDELCSLVDPKVDAFTPKKGRPSVIMMVGLQGSGKTTTCSK 120
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
A ++Q++G K LV ADTFRAGAFDQLKQNA KA++P++GSYTE+DPV IA EGV+ FK
Sbjct: 121 LALHYQRRGLKSCLVAADTFRAGAFDQLKQNAIKARVPYFGSYTETDPVVIAKEGVDKFK 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV 240
+ D+IIVDTSGRH+QE LF EM ++S+A PD I ++D+SIGQAA Q++AFK++
Sbjct: 181 NDRFDVIIVDTSGRHQQEQELFAEMVEISDAIRPDQTIMILDASIGQAAESQSKAFKETA 240
Query: 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300
GAVI+TK+DGHAKGGGALSAVAATK+P++FIGTGEH+++ E F + F+S+LLG+GD
Sbjct: 241 DFGAVIITKLDGHAKGGGALSAVAATKTPIVFIGTGEHINDLERFSPRSFISKLLGLGDL 300
Query: 301 SGFMDKIHEVVPMDQQPELLQKLSEGNFTLR 331
G M+ + + D++ +++ L +G FT+R
Sbjct: 301 EGLMEHVQS-LDFDKK-NMVKNLEQGKFTVR 329
>sp|Q00179|SRP54_ASPNG Signal recognition particle 54 kDa protein homolog OS=Aspergillus
niger GN=srpA PE=3 SV=1
Length = 534
Score = 370 bits (950), Expect = e-102, Method: Compositional matrix adjust.
Identities = 180/333 (54%), Positives = 238/333 (71%), Gaps = 2/333 (0%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEK-VLNECLNEITRALLQADVQFKLVREMQTNIKKI 59
MVL LG I+ A+ ++ + +DEK ++ + EI ALL ADV +LV+ ++ +IK
Sbjct: 1 MVLQDLGRRINAAVNDLTRSNNLDEKQAFDDMIKEICAALLSADVNVRLVQSLRKSIKSS 60
Query: 60 VNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCT 119
VN L NK+R+IQ+A+F+EL ++DP F PKKG+ +VIMFVGLQG+GKTTTCT
Sbjct: 61 VNFASLPPAVNKKRLIQKAVFDELVSLVDPHAEPFRPKKGRSNVIMFVGLQGAGKTTTCT 120
Query: 120 KYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179
K A ++Q +G+K ALVCADTFRAGAFDQLKQNATKAKIP+YGS T++DP +A EGV F
Sbjct: 121 KLARHYQMRGFKTALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPAIVAAEGVAKF 180
Query: 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQS 239
KKE ++IIVDTSGRHKQE LF EM Q+ A PD I V+DS+IGQAA Q+ AFK +
Sbjct: 181 KKERFEIIIVDTSGRHKQEEELFTEMTQIQTAVTPDQTILVLDSTIGQAAEAQSSAFKAT 240
Query: 240 VSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGD 299
GA+I+TK DGHA GGGA+SAVAAT +P+I++GTGEH+ + E F+ K F+ +LLGMGD
Sbjct: 241 ADFGAIIITKTDGHAAGGGAISAVAATHTPIIYLGTGEHLMDLERFEPKAFIQKLLGMGD 300
Query: 300 WSGFMDKIHEVVPMDQQP-ELLQKLSEGNFTLR 331
+G ++ + V E + +SEG +TLR
Sbjct: 301 MAGLVEHVQAVTKDSASAKETYKHISEGIYTLR 333
>sp|Q99150|SRP54_YARLI Signal recognition particle 54 kDa protein homolog OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=SRP54 PE=3 SV=2
Length = 536
Score = 356 bits (913), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 181/335 (54%), Positives = 241/335 (71%), Gaps = 10/335 (2%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVL LG I+ A +S IDE L+ L E+ ALL++DV KLV +++ +K V
Sbjct: 1 MVLEDLGKRINGAFANLSKGGDIDE-ALDAMLKEVCSALLESDVNIKLVSQLRQKVKNSV 59
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKML--DPGKPS---FTPKKGKPSVIMFVGLQGSGKT 115
G +K+++IQ+A+F+EL ++ D S F P+KGK +V+MFVGLQGSGKT
Sbjct: 60 KA--TPNGASKKKVIQKALFDELVNLVGVDESAASAAKFKPQKGKSNVVMFVGLQGSGKT 117
Query: 116 TTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEG 175
T+CTK A Y+Q++G+K LVCADTFRAGAFDQLKQNATKAKIPF+GSYTE+DPV +A EG
Sbjct: 118 TSCTKLAVYYQRRGFKVGLVCADTFRAGAFDQLKQNATKAKIPFFGSYTETDPVAVAAEG 177
Query: 176 VETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQA 235
V FKKE ++IIVDTSGRH+QE+ LF EM + A PD I V+D+SIGQAA Q++A
Sbjct: 178 VAKFKKEKFEIIIVDTSGRHRQESELFTEMVDIGAAVKPDSTIMVLDASIGQAAEPQSRA 237
Query: 236 FKQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLL 295
FK + G++I+TKMDGHAKGGGA+SAVAAT +P+IFIGTGEH+ + E F K F+S+LL
Sbjct: 238 FKDASDFGSIILTKMDGHAKGGGAISAVAATNTPIIFIGTGEHIHDLEAFSPKQFISKLL 297
Query: 296 GMGDWSGFMDKIHEVVPMDQQPELLQKLSEGNFTL 330
G+GD G M+ + + +DQ+ + ++ + EG FTL
Sbjct: 298 GIGDLQGLMETMQS-LNLDQK-KTMEHIQEGIFTL 330
>sp|O42816|SRP54_CANAX Signal recognition particle 54 kDa protein homolog OS=Candida
albicans GN=SRP54 PE=2 SV=1
Length = 556
Score = 341 bits (875), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 177/353 (50%), Positives = 241/353 (68%), Gaps = 25/353 (7%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVLA LG + A+ + + + D+++ + + +I ALL++DV KLV +++ NIK +
Sbjct: 1 MVLADLGSRLRGALSSVESGS--DDEI-QQMIKDICSALLESDVNVKLVAKLRGNIKNKI 57
Query: 61 ---NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPS--------------- 102
N+ + NKR+ +Q+ IF+ELC ++D PKK S
Sbjct: 58 DESNVSKETSAMNKRKKLQKIIFDELCALVDSNVEPPKPKKLSTSTKTINGKKVRLSKES 117
Query: 103 --VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFY 160
VIMFVGLQG+GKTT+CTK A Y++K+G+K LVCADTFRAGAFDQLKQNA KA IP+Y
Sbjct: 118 SHVIMFVGLQGAGKTTSCTKLAVYYKKRGFKVGLVCADTFRAGAFDQLKQNAIKANIPYY 177
Query: 161 GSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFV 220
GSY E DPV+IA EGV+ FK+E D+IIVDTSGRH+QE LF EM Q+ EA P I V
Sbjct: 178 GSYLEPDPVKIAFEGVQKFKQEKFDIIIVDTSGRHRQEEQLFTEMVQIGEAVQPTQTIMV 237
Query: 221 MDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMD 280
MD SIGQAA QA+AFK+S + G++I+TKMDGHAKGGGA+SAVAATK+P++FIGTGEH+
Sbjct: 238 MDGSIGQAAESQARAFKESSNFGSIILTKMDGHAKGGGAISAVAATKTPIVFIGTGEHVG 297
Query: 281 EFEVFDVKPFVSRLLGMGDWSGFMDKIHEV-VPMDQ-QPELLQKLSEGNFTLR 331
+ E+F F+S+LLG+GD G ++ + + + D+ + ++ + EG FTLR
Sbjct: 298 DLEIFKPTTFISKLLGIGDIQGLIEHVQSLNLHQDEGHKQTIEHIKEGKFTLR 350
>sp|P20424|SRP54_YEAST Signal recognition particle subunit SRP54 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SRP54 PE=1
SV=2
Length = 541
Score = 337 bits (864), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 168/338 (49%), Positives = 234/338 (69%), Gaps = 8/338 (2%)
Query: 1 MVLAQLGGSISRAIQQMSNATIID-EKVLNECLNEITRALLQADVQFKLVREMQTNIKKI 59
MVLA LG I+ A+ + T D ++ L I ALL++DV LV +++ NI+
Sbjct: 1 MVLADLGKRINSAVNNAISNTQDDFTTSVDVMLKGIVTALLESDVNIALVSKLRNNIRSQ 60
Query: 60 VNLDDLA----AGHNKRRIIQQAIFNELCKMLD---PGKPSFTPKKGKPSVIMFVGLQGS 112
+ ++ + +++IQ+ +F+ELCK++ + +F PKK K ++IMFVGLQGS
Sbjct: 61 LLSENRSEKSTTNAQTKKLIQKTVFDELCKLVTCEGSEEKAFVPKKRKTNIIMFVGLQGS 120
Query: 113 GKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIA 172
GKTT+CTK A Y+ K+G+K LVCADTFRAGAFDQLKQNA +A+IPFYGSYTE+DP ++A
Sbjct: 121 GKTTSCTKLAVYYSKRGFKVGLVCADTFRAGAFDQLKQNAIRARIPFYGSYTETDPAKVA 180
Query: 173 VEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ 232
EG+ FKKE D+IIVDTSGRH QE LF+EM ++S P+ I V+D+SIGQAA Q
Sbjct: 181 EEGINKFKKEKFDIIIVDTSGRHHQEEELFQEMIEISNVIKPNQTIMVLDASIGQAAEQQ 240
Query: 233 AQAFKQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVS 292
++AFK+S GA+I+TKMDGHA+GGGA+SAVAAT +P+IFIGTGEH+ + E F K F+S
Sbjct: 241 SKAFKESSDFGAIILTKMDGHARGGGAISAVAATNTPIIFIGTGEHIHDLEKFSPKSFIS 300
Query: 293 RLLGMGDWSGFMDKIHEVVPMDQQPELLQKLSEGNFTL 330
+LLG+GD +++ V + ++ + +G FTL
Sbjct: 301 KLLGIGDIESLFEQLQTVSNKEDAKATMENIQKGKFTL 338
>sp|Q5JJC8|SRP54_PYRKO Signal recognition particle 54 kDa protein OS=Pyrococcus
kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
GN=srp54 PE=3 SV=1
Length = 448
Score = 307 bits (786), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 158/337 (46%), Positives = 230/337 (68%), Gaps = 4/337 (1%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
M L +LG +++ A+++++ ++ +DE + E + +I RALLQADV KLV ++ I+K
Sbjct: 1 MALEKLGQALNSALKKLARSSTVDEATIKEIVRDIQRALLQADVNVKLVLQLTKQIQKRA 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKML-DPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCT 119
++ AG +K+ I + ++ EL K L KP K KP+VI+ VG+QGSGKTT+
Sbjct: 61 LEEEPPAGVSKKEHIIKIVYEELTKFLGTEAKPLEI--KHKPTVILTVGIQGSGKTTSVA 118
Query: 120 KYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179
K A Y QK+G+K +VC+DT+R GA+ QL+Q I +G E D V++A EGVE F
Sbjct: 119 KLARYLQKRGYKVGVVCSDTWRPGAYYQLRQLLDPFGIEVFGDPEEKDAVKLAREGVEHF 178
Query: 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQS 239
+++ D+IIVD++GRHK+E L EEMRQ+SEA P VI V+D +IGQ A++QA AFK++
Sbjct: 179 REKGVDVIIVDSAGRHKEEKGLIEEMRQISEAIKPHEVILVIDGTIGQQAYNQAMAFKEA 238
Query: 240 VSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGD 299
+G++IVTK+DG AKGGGALSAVAAT +P+ FIGTGE +D+ E FD K FVSRLLG+GD
Sbjct: 239 TPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGTGERIDDLEPFDPKRFVSRLLGLGD 298
Query: 300 WSGFMDKIHEVVPMDQ-QPELLQKLSEGNFTLRIMFS 335
G ++KI E+ + + E ++K G F L+ M++
Sbjct: 299 IQGLLEKIEELQKEQEFREEDMEKFLRGKFNLKDMYA 335
>sp|Q57565|SRP54_METJA Signal recognition particle 54 kDa protein OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=srp54 PE=1 SV=1
Length = 451
Score = 302 bits (774), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 157/333 (47%), Positives = 225/333 (67%), Gaps = 9/333 (2%)
Query: 2 VLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVN 61
+L +LG ++++A+ ++ A +D+K++ E + +I RAL+QADV KLV +M I++
Sbjct: 1 MLDKLGENLNKALNKLKAAAFVDKKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRAL 60
Query: 62 LDDLAAGHNKRRIIQQAIFNELCKML--DPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCT 119
+ G +K+ I + ++ EL K+L + K PKK +VI+ VG+QGSGKTTT
Sbjct: 61 EEKTPKGLSKKEHIIKIVYEELVKLLGEEAKKLELNPKK--QNVILLVGIQGSGKTTTAA 118
Query: 120 KYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTES-DPVRIAVEGVET 178
K A Y QK+G KPAL+ ADT+R A++QLKQ A K +P YG T + PV I EG+E
Sbjct: 119 KLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEK 178
Query: 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQ 238
FKK D++I+DT+GRHK+E L EEM+Q+ E TNPD +I V+D +IGQ A QA+AFK+
Sbjct: 179 FKK--ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQAGIQAKAFKE 236
Query: 239 SV-SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGM 297
+V +G++IVTK+DG AKGGGALSAVA TK+P+ FIG GE +D+ E FD K F+SRLLGM
Sbjct: 237 AVGEIGSIIVTKLDGSAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGM 296
Query: 298 GDWSGFMDKIHEVVPMDQQPELLQKLSEGNFTL 330
GD ++K ++V ++ E + + G FTL
Sbjct: 297 GDLESLLEKAEDMVD-EKTEESIDAIMRGKFTL 328
>sp|B6YSS1|SRP54_THEON Signal recognition particle 54 kDa protein OS=Thermococcus
onnurineus (strain NA1) GN=srp54 PE=3 SV=1
Length = 448
Score = 300 bits (768), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 228/337 (67%), Gaps = 4/337 (1%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
M L +LG +++ A+++++ ++ +DE + E + +I RAL+QADV +LV ++ I+K
Sbjct: 1 MALEKLGKALNNALRKLARSSTVDEATIKEVVRDIQRALIQADVNVRLVLDLTKRIEKRA 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKML-DPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCT 119
++ G +K+ I + ++ EL K L KP K KP+V++ VG+QGSGKTT+
Sbjct: 61 LEEEPPTGVSKKEHIIKIVYEELTKFLGTEAKP--IEIKEKPTVLLTVGIQGSGKTTSIA 118
Query: 120 KYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179
K A Y QK+G+K LVC+DT+R GA+ QLKQ I +G E D +++A EGVE F
Sbjct: 119 KLARYFQKRGYKVGLVCSDTWRPGAYQQLKQLVEPFGIEVFGDPEEKDAIKLAKEGVEHF 178
Query: 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQS 239
+++ D+IIVD++GRHK+E +L EEM+Q+S A P VI V+D +IGQ A++QA AFK++
Sbjct: 179 REKGVDIIIVDSAGRHKEEKSLIEEMKQISAAIKPHEVILVIDGTIGQQAYNQALAFKEA 238
Query: 240 VSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGD 299
+G++IVTK+DG AKGGGALSAVAAT +P+ FIG GE +D+ E FD K FVSRLLG+GD
Sbjct: 239 TPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGVGERIDDLEPFDPKRFVSRLLGLGD 298
Query: 300 WSGFMDKIHEVVPMDQ-QPELLQKLSEGNFTLRIMFS 335
G ++K E+ + + E L+K +G F L+ M++
Sbjct: 299 IQGLLEKFEELQKQQEFREEDLEKFLKGKFNLKDMYA 335
>sp|C5A233|SRP54_THEGJ Signal recognition particle 54 kDa protein OS=Thermococcus
gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
GN=srp54 PE=3 SV=1
Length = 448
Score = 298 bits (763), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 151/337 (44%), Positives = 229/337 (67%), Gaps = 4/337 (1%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
M L +LG +++ A+++++ ++ +DE ++ E + +I RAL+Q+DV +LV ++ I++
Sbjct: 1 MALEKLGKALNSALRKLARSSTVDEALIREVVRDIQRALIQSDVNVRLVLQLTKRIQERA 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPK-KGKPSVIMFVGLQGSGKTTTCT 119
+ AG + R + + ++ EL K+L GK + + + KP++++ VG+QGSGKTTT
Sbjct: 61 LNEKPPAGVSPREHVIKIVYEELTKLL--GKEAVPLEIREKPTILLTVGIQGSGKTTTIA 118
Query: 120 KYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179
K A + QK+G+K LVC DT+R GA+ QLKQ I +G E D +++A EGVE F
Sbjct: 119 KLARHLQKRGYKVGLVCTDTWRPGAYYQLKQLVEPYNIEVFGDPGEKDAIKLAREGVEYF 178
Query: 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQS 239
K + D+IIVDT+GRHK+E+ L EEM+Q+SEA P VI V+D +IGQ A+ QA AFK++
Sbjct: 179 KDKGVDVIIVDTAGRHKEESGLIEEMKQISEAIKPHEVILVIDGTIGQQAYHQALAFKEA 238
Query: 240 VSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGD 299
+G++IVTK+DG AKGGGALSAVAAT +P+ FIG GE +D+ E FD K FVSRLLG+GD
Sbjct: 239 TPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGVGEKIDDLEPFDPKRFVSRLLGLGD 298
Query: 300 WSGFMDKIHEVVPMDQ-QPELLQKLSEGNFTLRIMFS 335
G ++KI E+ + + E ++K G F L+ M++
Sbjct: 299 IQGLLEKIEELQKEQEFKEEDVEKFLRGKFNLKDMYA 335
>sp|Q8U070|SRP54_PYRFU Signal recognition particle 54 kDa protein OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=srp54
PE=1 SV=1
Length = 443
Score = 298 bits (763), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 150/337 (44%), Positives = 230/337 (68%), Gaps = 4/337 (1%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVL LG +++ +++++ A+ +DE ++ E + +I RAL+QADV +LV ++ I++
Sbjct: 1 MVLDNLGKALANTLKKIARASSVDEALIKELVRDIQRALIQADVNVRLVLQLTREIQRRA 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKML-DPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCT 119
+ AG +K+ I + ++ EL K L KP K KP++++ VG+QGSGKTTT
Sbjct: 61 LEEKPPAGISKKEHIIKIVYEELTKFLGTEAKP--IEIKEKPTILLMVGIQGSGKTTTVA 118
Query: 120 KYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179
K A Y QK+G+K +VC+DT+R GA+ QL+Q + I +G+ E D +++A EGV+ F
Sbjct: 119 KLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178
Query: 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQS 239
K + D+IIVDT+GRHK++ AL EEM+Q+S +P VI V+D +IGQ A++QA AFK++
Sbjct: 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFKEA 238
Query: 240 VSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGD 299
+G++IVTK+DG AKGGGALSAVAAT +P+ FIGTGE +D+ E FD FVSRLLG+GD
Sbjct: 239 TPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDPPRFVSRLLGLGD 298
Query: 300 WSGFMDKIHEV-VPMDQQPELLQKLSEGNFTLRIMFS 335
G ++K E+ ++ + E +++ G FTL+ M++
Sbjct: 299 IQGLLEKFKELEKEVEIKEEDIERFLRGKFTLKDMYA 335
>sp|O59307|SRP54_PYRHO Signal recognition particle 54 kDa protein OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=srp54 PE=3 SV=3
Length = 443
Score = 296 bits (758), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 157/337 (46%), Positives = 222/337 (65%), Gaps = 4/337 (1%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVL LG ++S A+++++ A +DE ++ E + +I RALLQADV +LV ++ I++
Sbjct: 1 MVLDSLGRALSNALKKIARAGSVDEALVKEVVRDIQRALLQADVNVRLVLKLTKEIQRRA 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKML-DPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCT 119
+ AG +K+ I + ++ EL K L KP K KP+V++ VG+QGSGKTTT
Sbjct: 61 LEEKPPAGISKKEHIIKIVYEELTKFLGTEAKP--IEIKEKPTVLLTVGVQGSGKTTTVA 118
Query: 120 KYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179
K A Y QK+G+K +VC+DT+R GA+ QLKQ I +G E D V++A EGVE F
Sbjct: 119 KLARYFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAVKLAKEGVEYF 178
Query: 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQS 239
K + DLIIVDT+GRHK+E L EEMR +SE P VI V+D +IGQ A++QA AFK++
Sbjct: 179 KTRDVDLIIVDTAGRHKEEKDLIEEMRMISEEIRPHEVILVIDGTIGQQAYNQALAFKEA 238
Query: 240 VSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGD 299
+G++IVTK+D AKGGGALSAVAAT +P+ FIG GE +D+ E FD FVSRLLG+GD
Sbjct: 239 TPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGVGEKIDDLEPFDPARFVSRLLGLGD 298
Query: 300 WSGFMDKIHEV-VPMDQQPELLQKLSEGNFTLRIMFS 335
G ++K E+ ++ E + + G FTL+ M++
Sbjct: 299 IQGLLEKFKELEKEVEFTEEDIDRFLRGKFTLKDMYA 335
>sp|A6UQJ8|SRP54_METVS Signal recognition particle 54 kDa protein OS=Methanococcus
vannielii (strain SB / ATCC 35089 / DSM 1224) GN=srp54
PE=3 SV=1
Length = 450
Score = 295 bits (756), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 154/339 (45%), Positives = 228/339 (67%), Gaps = 11/339 (3%)
Query: 2 VLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVN 61
+L +LG ++S A+ ++ NAT +D+K++ E + +I +AL+Q+DV KLV M I++
Sbjct: 1 MLDKLGQNLSEALNKIKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAI 60
Query: 62 LDDLAAGHNKRRIIQQAIFNELCKML--DPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCT 119
+ G +K+ I + +++EL K+L +P K P K SVI+ VG+QGSGKTT+
Sbjct: 61 EEAPPKGFSKKEHIIKIVYDELVKLLGENPQKLELDP--SKKSVILLVGIQGSGKTTSSA 118
Query: 120 KYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESD-PVRIAVEGVET 178
K A Y QKKG KPAL+ AD +R A+ QLKQ + K +P +G T++ PV I EG+E
Sbjct: 119 KLARYIQKKGMKPALIAADIYRPAAYQQLKQLSEKINVPLFGDETKTKTPVEIVKEGIEK 178
Query: 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQ 238
KK D++I+DT+GRHK+E +L EEM+Q+ E TNP+ +I V+D ++GQ A +QA+AFK
Sbjct: 179 LKK--SDVLIIDTAGRHKEEESLLEEMKQMKEITNPNEIILVIDGTLGQQAKNQAKAFKD 236
Query: 239 SVS-VGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGM 297
+VS +G+++VTK+DG AKGGGALSAVA +P+ FIGTGE +D E FD K F+SRLLGM
Sbjct: 237 AVSEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLETFDPKKFISRLLGM 296
Query: 298 GDWSGFMDKIHEVVPMDQQ-PELLQKLSEGNFTLRIMFS 335
GD ++K +V MD+ E + + +G FTL +++
Sbjct: 297 GDLDSLLEKTEDV--MDESTEESIDSILKGKFTLVELYA 333
>sp|Q9V1E8|SRP54_PYRAB Signal recognition particle 54 kDa protein OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=srp54 PE=3 SV=1
Length = 443
Score = 294 bits (752), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 154/337 (45%), Positives = 224/337 (66%), Gaps = 4/337 (1%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVL LG ++S A+++++ A +DE ++ E + +I RAL+QADV +LV ++ I++
Sbjct: 1 MVLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRA 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKML-DPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCT 119
+ AG +K+ I + ++ EL K L KP K KP++++ VG+QGSGKTTT
Sbjct: 61 LEEKPPAGISKKEHIIKIVYEELTKFLGTEAKP--IEIKEKPTILLMVGVQGSGKTTTVA 118
Query: 120 KYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179
K A + QK+G+K +VC+DT+R GA+ QLKQ I +G E D +++A EGVE F
Sbjct: 119 KLARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHF 178
Query: 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQS 239
K + DLIIVDT+GRHK+E L EEMR +S P VI V+D +IGQ A++QA AFK++
Sbjct: 179 KAKGVDLIIVDTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEA 238
Query: 240 VSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGD 299
+G++IVTK+D AKGGGALSAVAAT +P+ FIGTGE +D+ E FD FVSRLLG+GD
Sbjct: 239 TPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGD 298
Query: 300 WSGFMDKIHEV-VPMDQQPELLQKLSEGNFTLRIMFS 335
G ++K E+ ++ E L++ +G FTL+ M++
Sbjct: 299 IQGLLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYA 335
>sp|A6UWG4|SRP54_META3 Signal recognition particle 54 kDa protein OS=Methanococcus
aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=srp54 PE=3
SV=1
Length = 450
Score = 286 bits (733), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 148/338 (43%), Positives = 226/338 (66%), Gaps = 9/338 (2%)
Query: 2 VLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVN 61
+L +LG +I+ A+ ++ NAT +D+K++ E + +I +AL+QADV KLV M I++
Sbjct: 1 MLDKLGSNINNALSKIKNATFVDKKLVKEVIKDIQKALIQADVNVKLVFAMSKEIERKAI 60
Query: 62 LDDLAAGHNKRRIIQQAIFNELCKML--DPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCT 119
+ G +K+ I + +++EL K+L + K PK ++I+ VG+QGSGKTT+
Sbjct: 61 YESAPKGLSKKDHIIKIVYDELVKLLGEEGQKLELDPKN--KNIILLVGIQGSGKTTSAA 118
Query: 120 KYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESD-PVRIAVEGVET 178
K A QK+G+KPAL+ AD +R A+ QLKQ + K IP +G T++ P+ I EG++
Sbjct: 119 KLARTLQKRGFKPALIAADVYRPAAYQQLKQLSEKIHIPLHGDPTKTKTPMEITEEGLKQ 178
Query: 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQ 238
FKK D+II+DT+GRHK+E+ L EEM+++ E NP+ +I V+D ++GQ A +QA+AFK
Sbjct: 179 FKKN--DVIIIDTAGRHKEESGLLEEMKEMKEKFNPEEIILVIDGTLGQQAKNQAKAFKD 236
Query: 239 SV-SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGM 297
+V ++G++++TKMDG AKGGGALSAVA +P+ FIGTGE +D+ E FD K F+SRLLGM
Sbjct: 237 AVENIGSILITKMDGSAKGGGALSAVAEIGAPIKFIGTGEKVDDLEPFDPKKFISRLLGM 296
Query: 298 GDWSGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMFS 335
GD ++K +++ D E L + G FTL ++S
Sbjct: 297 GDLDSLLEKTEDIID-DDTEESLDAMMRGKFTLNELYS 333
>sp|A6VHE0|SRP54_METM7 Signal recognition particle 54 kDa protein OS=Methanococcus
maripaludis (strain C7 / ATCC BAA-1331) GN=srp54 PE=3
SV=1
Length = 450
Score = 283 bits (723), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 145/337 (43%), Positives = 219/337 (64%), Gaps = 7/337 (2%)
Query: 2 VLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVN 61
+L +LG ++S A+ ++ NAT +D+K++ E + +I +AL+Q+DV KLV M I++
Sbjct: 1 MLDKLGQNLSEALNKIKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAI 60
Query: 62 LDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKY 121
+ G +K+ I + +++EL +L K SVI+ +G+QGSGKTT+ K
Sbjct: 61 EEAPPKGLSKKEHIVKIVYDELVNLLGETTQKLELDPSKKSVILLIGIQGSGKTTSAAKL 120
Query: 122 AYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESD-PVRIAVEGVETFK 180
A Y QKKG +P L+ AD +R A+ QLKQ + K +P +G T + PV I EG+E K
Sbjct: 121 ARYIQKKGLRPGLIAADVYRPAAYQQLKQLSEKINVPLFGDETRTKTPVEITKEGMEKLK 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV 240
K D+II+DT+GRHK+E L EMR++ + TNP +I V+D ++GQ A +QA+AFK+SV
Sbjct: 181 K--VDVIIIDTAGRHKEEEGLLAEMREMKDLTNPTEIILVIDGTLGQQAKNQAKAFKESV 238
Query: 241 S-VGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGD 299
S +G+++VTK+DG AKGGGALSAVA +P+ FIGTGE +D E FD K F+SR+LGMGD
Sbjct: 239 SEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISRILGMGD 298
Query: 300 WSGFMDKIHEVVPMDQQ-PELLQKLSEGNFTLRIMFS 335
++K ++ MD+ E + + +G FTL +++
Sbjct: 299 LDSLLEKTEDI--MDESTEESIDSILKGKFTLIELYA 333
>sp|Q12ZG8|SRP54_METBU Signal recognition particle 54 kDa protein OS=Methanococcoides
burtonii (strain DSM 6242) GN=srp54 PE=3 SV=1
Length = 439
Score = 281 bits (718), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 147/335 (43%), Positives = 211/335 (62%), Gaps = 8/335 (2%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MV+ +LG S+ A++++ A IDEK + E + +I RALLQADV KLV +M ++IK+
Sbjct: 1 MVMDKLGSSLQDALKKLVGAGRIDEKTVTEVVKDIQRALLQADVNVKLVMQMSSHIKERA 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
+++ G N R + + ++ EL ++ G+ + P K P IM +GLQGSGKTTT +K
Sbjct: 61 LKEEVPPGMNPREHVIKIVYQELISIV--GRSADIPLK--PQTIMMIGLQGSGKTTTTSK 116
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
+ Y Q+KG KPA++CADTFR GA+ QLK K +PFYG D V I G+
Sbjct: 117 LSRYFQRKGLKPAVICADTFRPGAYQQLKTLCDKLNVPFYGEVGNPDAVGIVERGLAELG 176
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV 240
K D++IVDT+GRH EA L +EM Q+ E PD + V+D +IGQ A +QA+AF SV
Sbjct: 177 KN--DVLIVDTAGRHSLEADLIDEMEQIHEIAQPDYKLLVLDGAIGQQASEQARAFNDSV 234
Query: 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300
+ V+++K+DG AKGGGALSAV+ T S + FIG GE D+ E F+ F+SRLLGMGD
Sbjct: 235 GISGVVISKLDGTAKGGGALSAVSETNSAIAFIGVGETPDDLEKFEPDRFISRLLGMGDI 294
Query: 301 SGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMFS 335
++K E + ++ ++ + G FTL+ M+S
Sbjct: 295 KSLIEKAEET--LSEEDIDMEAMMRGRFTLKDMYS 327
>sp|A9A9B0|SRP54_METM6 Signal recognition particle 54 kDa protein OS=Methanococcus
maripaludis (strain C6 / ATCC BAA-1332) GN=srp54 PE=3
SV=1
Length = 450
Score = 279 bits (713), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 144/337 (42%), Positives = 219/337 (64%), Gaps = 7/337 (2%)
Query: 2 VLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVN 61
+L +LG ++S A+ ++ NAT +D+K++ E + +I +AL+Q+DV KLV M I++
Sbjct: 1 MLDKLGQNLSEALNKIKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAI 60
Query: 62 LDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKY 121
+ G +K+ I + +++EL K+L K SVI+ +G+QGSGKTT+ K
Sbjct: 61 EEAPPKGLSKKEHIVKIVYDELVKLLGETIQKLELDASKKSVILLIGIQGSGKTTSAAKL 120
Query: 122 AYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESD-PVRIAVEGVETFK 180
A Y QKKG +P L+ AD +R A+ QLKQ + K +P +G T + PV I EG+E K
Sbjct: 121 ARYIQKKGLRPGLIAADVYRPAAYQQLKQLSEKINVPLFGDETRTKTPVDITKEGMEKLK 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV 240
K D+II+DT+GRHK+E L EM+++ + TNP+ +I V+D ++GQ A +QA+AFK SV
Sbjct: 181 K--VDVIIIDTAGRHKEEEGLLAEMKEMKDLTNPNEIILVIDGTLGQQAKNQAKAFKDSV 238
Query: 241 S-VGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGD 299
S +G+++VTK+DG AKGGGALSAVA +P+ FIGTGE +D E FD K F+SR+LG GD
Sbjct: 239 SEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISRILGFGD 298
Query: 300 WSGFMDKIHEVVPMDQQP-ELLQKLSEGNFTLRIMFS 335
++K ++ MD+ E + + +G FTL +++
Sbjct: 299 LDSLLEKTEDI--MDESAEESIDSILKGKFTLIELYA 333
>sp|Q8PXF3|SRP54_METMA Signal recognition particle 54 kDa protein OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=srp54 PE=3 SV=1
Length = 443
Score = 275 bits (702), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 149/334 (44%), Positives = 204/334 (61%), Gaps = 8/334 (2%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MV+ +LG S+ A++++ A IDE+ +NE + +I RALLQADV KLV M IK+
Sbjct: 1 MVMEKLGDSLQGALKKLIGAGRIDERTVNEVVKDIQRALLQADVNVKLVMGMSQRIKERA 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
+D AG N R + + ++ EL +++ G + KP IM VGLQGSGKTT+ K
Sbjct: 61 MKEDPPAGMNPREHVIRIVYQELMEIIGKG----ADIQLKPQTIMMVGLQGSGKTTSAAK 116
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
A Y Q+KG K +V ADTFR GA+ QLK + K + FYG D V I + G++
Sbjct: 117 LARYFQRKGLKAGVVAADTFRPGAYHQLKTLSEKLNVGFYGEEGNPDAVEITIHGLKAL- 175
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV 240
E D+ IVDT+GRH EA L EEM ++ PD V+D+ IGQ A QA AF SV
Sbjct: 176 -EKYDIKIVDTAGRHALEADLIEEMERIHAVAKPDHKFMVLDAGIGQQASQQAHAFNDSV 234
Query: 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300
+ VI+TK+DG AKGGGALSAV+ TK+P+ FIG GE ++FE F+ F+SRLLGMGD
Sbjct: 235 GITGVIITKLDGTAKGGGALSAVSETKAPIAFIGVGETPEDFEKFEADRFISRLLGMGDL 294
Query: 301 SGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMF 334
M+K E + ++ ++ L +G FTL+ M+
Sbjct: 295 KSLMEKAEE--SLSEEDVNVEALMQGRFTLKDMY 326
>sp|Q46E01|SRP54_METBF Signal recognition particle 54 kDa protein OS=Methanosarcina
barkeri (strain Fusaro / DSM 804) GN=srp54 PE=3 SV=1
Length = 443
Score = 273 bits (698), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 149/334 (44%), Positives = 203/334 (60%), Gaps = 8/334 (2%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MV+ +LG S+ A++++ A IDE+ +NE + +I RALLQADV KLV M IK+
Sbjct: 1 MVMEKLGDSLQGALKKLIGAGRIDERTVNEVVKDIQRALLQADVNVKLVMGMSQRIKERA 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
+ AG N R + + ++ EL +++ G + KP +IM VGLQGSGKTT+ K
Sbjct: 61 MKEAPPAGMNPREHVIRIVYQELMEIIGKG----AEIQLKPQIIMMVGLQGSGKTTSTAK 116
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
A Y Q+KG K +V ADTFR GA+ QLK K + FYG D V I G++
Sbjct: 117 LARYFQRKGLKAGVVAADTFRPGAYHQLKTLCEKLNVAFYGEENNPDAVEITRNGLKAL- 175
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV 240
E D+ IVDT+GRH EA L EEM Q++ PD V+D+ IGQ A QA AF SV
Sbjct: 176 -EKYDVKIVDTAGRHALEADLIEEMEQINAVAKPDHKFMVLDAGIGQQASQQAHAFNDSV 234
Query: 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300
+ VI+TK+DG AKGGGALSAV+ TK+P+ FIG GE ++FE F+ F+SRLLGMGD
Sbjct: 235 GITGVIITKLDGTAKGGGALSAVSETKAPIAFIGVGETPEDFEKFEADRFISRLLGMGDL 294
Query: 301 SGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMF 334
M+K E + ++ ++ L +G FTL+ M+
Sbjct: 295 KSLMEKAEET--LSEEDVNVEALMQGRFTLKDMY 326
>sp|Q8THD0|SRP54_METAC Signal recognition particle 54 kDa protein OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=srp54 PE=3 SV=1
Length = 440
Score = 273 bits (697), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 149/334 (44%), Positives = 203/334 (60%), Gaps = 8/334 (2%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MV+ +LG S+ A++++ A IDE+ +NE + +I RALLQADV KLV M IK+
Sbjct: 1 MVMEKLGDSLQGALKKLIGAGRIDERTVNEVVKDIQRALLQADVNVKLVMGMSQRIKERA 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
++ AG N R + + ++ EL +++ G + KP IM VGLQGSGKTT+ K
Sbjct: 61 MKEEPPAGMNPREHVIRIVYQELMEIIGKG----AEIQLKPQTIMMVGLQGSGKTTSAAK 116
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
A Y Q+KG K +V ADTFR GA+ QLK A K + FYG D V I G++
Sbjct: 117 LARYFQRKGLKAGVVAADTFRPGAYHQLKTLAEKLNVGFYGEEGNPDAVEITKNGLKAL- 175
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV 240
E D+ IVDT+GRH EA L EEM ++ PD V+D+ IGQ A QA AF SV
Sbjct: 176 -EKYDIRIVDTAGRHALEADLIEEMERIHAVAKPDHKFMVLDAGIGQQASQQAHAFNDSV 234
Query: 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300
+ VI+TK+DG AKGGGALSAV+ TK+P+ FIG GE ++FE F+ F+SRLLGMGD
Sbjct: 235 GITGVIITKLDGTAKGGGALSAVSETKAPIAFIGVGETPEDFEKFEADRFISRLLGMGDL 294
Query: 301 SGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMF 334
M+K E + ++ ++ L +G FTL+ M+
Sbjct: 295 KSLMEKAEE--SLSEEDVNVEALMQGRFTLKDMY 326
>sp|A0B638|SRP54_METTP Signal recognition particle 54 kDa protein OS=Methanosaeta
thermophila (strain DSM 6194 / PT) GN=srp54 PE=3 SV=1
Length = 444
Score = 268 bits (685), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 147/335 (43%), Positives = 210/335 (62%), Gaps = 10/335 (2%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVL LGGS+ A++++++AT +D+ ++++ + +I RALLQADV KLV + I++
Sbjct: 1 MVLDNLGGSLRGALKKIASATRVDKALVDDAVRDIQRALLQADVNVKLVMSLSNRIRERA 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
+ AG N R + ++ EL ++ G+ + P K IM VGLQGSGKTTT K
Sbjct: 61 LNEKPPAGMNPREHVINIVYQELINLI--GRGTDIPLK--KQTIMLVGLQGSGKTTTAAK 116
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
A Y Q++G + A++CADTFRAGA+DQLK + I FYG + +A G+E K
Sbjct: 117 LATYFQRRGLRTAVICADTFRAGAYDQLKALCDRQGIFFYGEKGNENAPEVAKNGLEATK 176
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV 240
K D+ IVDT+GRH E+ L +EM+ + N D + VMD++IGQ A +QA+AF ++V
Sbjct: 177 K--YDVRIVDTAGRHALESDLIQEMKDIHAVVNADHKLLVMDAAIGQQASEQARAFNEAV 234
Query: 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300
+ VI+TK+DG AKGGGALSAVA TK+ V FIG GE + E F+ F+SRLLGMGD
Sbjct: 235 GITGVIITKLDGTAKGGGALSAVAETKTSVAFIGVGETASDLEKFEADRFISRLLGMGDI 294
Query: 301 SGFMDKIHEV-VPMDQQPELLQKLSEGNFTLRIMF 334
G ++K EV + D + + K G FTL+ M+
Sbjct: 295 KGLIEKAQEVQIESDVDVDAMMK---GKFTLKDMY 326
>sp|A5UMY7|SRP54_METS3 Signal recognition particle 54 kDa protein OS=Methanobrevibacter
smithii (strain PS / ATCC 35061 / DSM 861) GN=srp54 PE=3
SV=2
Length = 445
Score = 267 bits (683), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 137/329 (41%), Positives = 205/329 (62%), Gaps = 3/329 (0%)
Query: 2 VLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVN 61
+L LG ++++ ++++ ++ID+K + E + EI RAL+Q+DV LV ++ IKK
Sbjct: 1 MLGNLGENLTKTMKKLVGISVIDKKTIEEVVKEIQRALIQSDVNIALVLDLSKKIKKRAL 60
Query: 62 LDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKY 121
++ G R + I+ E+ +L P KP I+F+GLQGSGKTTT K
Sbjct: 61 EEEPPKGITPREHVITIIYEEMVNLLGGEAPGLDIDV-KPYKILFLGLQGSGKTTTIGKL 119
Query: 122 AYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181
Y QKKG+ PA+VC DT+R A++QL+Q + ++P YG D + +A +G++ FK
Sbjct: 120 CRYLQKKGFNPAVVCTDTWRPAAYEQLRQLTEEMQVPLYGDPDNKDALDLAQKGLKEFK- 178
Query: 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVS 241
N +II DT+GRHKQE L EM + + P I V+D +IGQ A +QA+AF Q+
Sbjct: 179 -NRKVIIFDTAGRHKQEEDLIAEMDTLDDIIQPTESILVIDGTIGQQAGEQAKAFSQATD 237
Query: 242 VGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWS 301
VG++I+TK+DG AKGGGA+SAVA T +P+ FIGTGE +D+FE+FD F+SRLLGMGD
Sbjct: 238 VGSIIITKLDGSAKGGGAMSAVAETGAPIKFIGTGERIDDFELFDPARFISRLLGMGDIQ 297
Query: 302 GFMDKIHEVVPMDQQPELLQKLSEGNFTL 330
++K + + D + ++ + G FTL
Sbjct: 298 TLIEKAEDSIDEDMAEKTMKNMMSGKFTL 326
>sp|Q6LX03|SRP54_METMP Signal recognition particle 54 kDa protein OS=Methanococcus
maripaludis (strain S2 / LL) GN=srp54 PE=3 SV=1
Length = 450
Score = 266 bits (681), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 144/337 (42%), Positives = 221/337 (65%), Gaps = 7/337 (2%)
Query: 2 VLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVN 61
+L +LG ++S A+ ++ NAT +D+K++ E + +I +AL+Q+DV KLV M I++
Sbjct: 1 MLDKLGQNLSDALNKLKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAI 60
Query: 62 LDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKY 121
+ G +K+ I + +++EL K+L K SVI+ +G+QGSGKTT+ K
Sbjct: 61 DEAPPKGLSKKEHIVKIVYDELVKLLGETTQKLELDPSKKSVILLIGIQGSGKTTSAAKL 120
Query: 122 AYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESD-PVRIAVEGVETFK 180
A Y QKKG +P L+ AD +R A+ QLKQ + K +P +G T + PV I EG+E K
Sbjct: 121 ARYIQKKGLRPGLIAADVYRPAAYQQLKQLSEKINVPLFGDETRTKTPVEITKEGMEKLK 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV 240
K D+II+DT+GRHK+E L EM+++ + TNP+ +I V+D ++GQ A +QA+AFK+SV
Sbjct: 181 K--VDVIIIDTAGRHKEEEGLLAEMKEMKDLTNPNEIILVIDGTLGQQAKNQAKAFKESV 238
Query: 241 S-VGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGD 299
S +G+++VTK+DG AKGGGALSAVA +P+ FIGTGE +D E FD K F+SR+LG+GD
Sbjct: 239 SEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISRILGLGD 298
Query: 300 WSGFMDKIHEVVPMDQQ-PELLQKLSEGNFTLRIMFS 335
++K ++ MD+ E + + +G FTL +++
Sbjct: 299 LDSLLEKTEDI--MDESTEESIDSILKGKFTLIELYA 333
>sp|A2BNB5|SRP54_HYPBU Signal recognition particle 54 kDa protein OS=Hyperthermus
butylicus (strain DSM 5456 / JCM 9403) GN=srp54 PE=3
SV=1
Length = 447
Score = 266 bits (680), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 139/332 (41%), Positives = 212/332 (63%), Gaps = 12/332 (3%)
Query: 10 ISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGH 69
I RA+ ++ + E ++NE + ++ RAL+ ADV +LV + I++ + G
Sbjct: 7 IRRAVSKLLKRSGPYENIVNEFIRDLQRALISADVNVRLVFNLTKRIRERALKEQPPPGL 66
Query: 70 NKRRIIQQAIFNELCKML----DPG-KPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYY 124
++R + + ++EL K+ +P KP +TP VIM VG+QGSGKTTT K A +
Sbjct: 67 SRREWLVKLTYDELVKLFGGEYEPEVKPPYTP-----YVIMMVGVQGSGKTTTVGKLAKF 121
Query: 125 HQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENC 184
++ G++ +V ADT+R GA++QLKQ A +A FYG DPV IA GVE K+
Sbjct: 122 YRGMGYRVGVVAADTYRPGAYEQLKQLADRAGAMFYGEPGSKDPVGIARRGVEELKQRGA 181
Query: 185 DLIIVDTSGRHK--QEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSV 242
D++IVDT+GRH +E AL +EM++++EA PD V+ V+D+++GQ ++D A+ F ++ V
Sbjct: 182 DIVIVDTAGRHGYGEEEALLDEMKRIAEAIKPDEVVLVIDAAMGQKSYDLAKRFHEATPV 241
Query: 243 GAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSG 302
G++IVTKMDG AKGGGALSAVAAT + + FIGTGE +DE EVF K FV+RLLGMGD
Sbjct: 242 GSIIVTKMDGTAKGGGALSAVAATGARIKFIGTGEDIDEIEVFRPKRFVARLLGMGDLES 301
Query: 303 FMDKIHEVVPMDQQPELLQKLSEGNFTLRIMF 334
++KI + +++ + + ++ G T R ++
Sbjct: 302 LLEKIERLRGVEEFEKTVAEMMSGKITFRTIY 333
>sp|A4FVX4|SRP54_METM5 Signal recognition particle 54 kDa protein OS=Methanococcus
maripaludis (strain C5 / ATCC BAA-1333) GN=srp54 PE=3
SV=1
Length = 450
Score = 266 bits (680), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 144/337 (42%), Positives = 222/337 (65%), Gaps = 7/337 (2%)
Query: 2 VLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVN 61
+L +LG ++S A+ ++ NAT +D+K++ E + +I +AL+Q+DV KLV M I++
Sbjct: 1 MLDKLGQNLSDALNKIKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAI 60
Query: 62 LDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKY 121
+ G +K+ I + +++EL K+L K SVI+ +G+QGSGKTT+ K
Sbjct: 61 EEAPPKGLSKKEHIVKIVYDELVKLLGETTQKLELDPSKKSVILLIGIQGSGKTTSAAKL 120
Query: 122 AYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESD-PVRIAVEGVETFK 180
A Y QKKG +P L+ AD +R A+ QLKQ + K +P +G T + PV I EG+E K
Sbjct: 121 ARYIQKKGLRPGLIAADVYRPAAYQQLKQLSEKINVPLFGDETRTKTPVDITKEGMEKLK 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV 240
K D+II+DT+GRHK+E +L EM+++ + TNP+ +I V+D ++GQ A +QA+AFK+SV
Sbjct: 181 K--VDVIIIDTAGRHKEEESLLAEMKEMKDLTNPNEIILVIDGTLGQQAKNQAKAFKESV 238
Query: 241 S-VGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGD 299
S +G+++VTK+DG AKGGGALSAVA +P+ FIGTGE +D E FD K F+SR+LG+GD
Sbjct: 239 SEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISRILGLGD 298
Query: 300 WSGFMDKIHEVVPMDQQ-PELLQKLSEGNFTLRIMFS 335
++K ++ MD+ E + + +G FTL +++
Sbjct: 299 LDSLLEKTEDI--MDESTEESIDSILKGKFTLIELYA 333
>sp|A1RS43|SRP54_PYRIL Signal recognition particle 54 kDa protein OS=Pyrobaculum
islandicum (strain DSM 4184 / JCM 9189) GN=srp54 PE=3
SV=1
Length = 433
Score = 266 bits (680), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 140/326 (42%), Positives = 206/326 (63%), Gaps = 7/326 (2%)
Query: 6 LGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDL 65
LG S+ ++++ + IDE L E EI RALL+ADV +V+ N K + +
Sbjct: 4 LGEVFSKLVEKIRGVSYIDEATLQELSREIQRALLKADVPLDMVKTFTENAVKRMREEKP 63
Query: 66 AAGHNKRRIIQQAIFNELCKMLDPGKPS-FTPKKGKPSVIMFVGLQGSGKTTTCTKYAYY 124
AG R + +++EL K+L +P+ F P K KP +++ +G++GSGKTTT K A Y
Sbjct: 64 PAGIPPREYVLYILYDELVKLLGGEQPAEFKPVK-KPYLVLLLGVEGSGKTTTAAKLARY 122
Query: 125 HQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENC 184
K+G++ LV DT R AFDQLKQ A K +PFYG D V IA GV+ FK N
Sbjct: 123 LVKRGYRVGLVETDTIRPAAFDQLKQLAEKIGVPFYGERDSKDAVEIARRGVQNFK--NM 180
Query: 185 DLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGA 244
D++I+DT+GRHK E AL +E++ + EA NPD VI V+D+++G+ A QA+AF + + + +
Sbjct: 181 DVVIIDTAGRHKNEEALLQEVKMIYEAVNPDEVILVIDATVGKLAAAQAEAFMKYLPIHS 240
Query: 245 VIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFM 304
VI+TKMD A+GGGAL+AV T + V FIG GE +DEF++F+ + FV+R+LGMGD +
Sbjct: 241 VIITKMDSTARGGGALAAVIKTGARVKFIGVGEDVDEFDLFNPRKFVARVLGMGDLDALV 300
Query: 305 DKIHEVVPMDQQPELLQKLSEGNFTL 330
+KI V ++ ++LQ++ G L
Sbjct: 301 EKIKAVF---EEEKVLQEIESGRLDL 323
>sp|Q0W2G1|SRP54_UNCMA Signal recognition particle 54 kDa protein OS=Uncultured
methanogenic archaeon RC-I GN=srp54 PE=3 SV=1
Length = 444
Score = 263 bits (671), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 142/334 (42%), Positives = 209/334 (62%), Gaps = 8/334 (2%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVL LG S+ A+++++N+ ID++V++E + +I RA++QADV KLV ++ + IK
Sbjct: 1 MVLDNLGTSLKDALRKIANSGKIDKEVIDEVVKDIQRAMIQADVNVKLVMKLSSTIKNRA 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
+ AG N + + + ++ EL ++ GK TP + IM VGLQGSGKTTT K
Sbjct: 61 LTEAPPAGMNSKEHVLRIVYTELVNIV--GKA--TPVALQSQTIMMVGLQGSGKTTTSAK 116
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
A Y +KG KPA++CADT+R GA+DQLKQ K + FYG D V I G++
Sbjct: 117 IARYFARKGLKPAVICADTYRPGAYDQLKQLCDKLGVGFYGEAGNKDAVAIVRNGLKEMA 176
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV 240
K D+ IVDT+GRH E L +EM+ + T D + V+D++IGQ A +QA+AF ++
Sbjct: 177 K--YDVKIVDTAGRHALETDLIQEMKDIYGLTKFDHKLLVLDAAIGQQASEQARAFNDAI 234
Query: 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300
+ V++TK+DG AKGGGALSAV+ T + + FIG GE D+ E FD F+SRLLGMGD
Sbjct: 235 GITGVVITKLDGTAKGGGALSAVSDTNTSIAFIGVGETPDDMERFDPDGFISRLLGMGDL 294
Query: 301 SGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMF 334
+++ +EV+ D ++K+ +G FTL M+
Sbjct: 295 RALVERANEVLQKDDVN--VEKMMQGKFTLNDMY 326
>sp|C3NDW4|SRP54_SULIY Signal recognition particle 54 kDa protein OS=Sulfolobus islandicus
(strain Y.G.57.14 / Yellowstone #1) GN=srp54 PE=3 SV=1
Length = 447
Score = 262 bits (670), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 136/332 (40%), Positives = 211/332 (63%), Gaps = 6/332 (1%)
Query: 9 SISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAG 68
+I A+++ + EK ++E + E+ ++L+ +DV KLV + IK+ +N + +
Sbjct: 4 NIRDAVRKFLTGSTPYEKAVDEFIKELQKSLISSDVNVKLVFSLTAKIKERLNKEKPPSV 63
Query: 69 HNKRRIIQQAIFNELCKMLDPGK-PSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQK 127
++ +++EL K+ K P+ P K P +IM VG+QGSGKTTT K AY++++
Sbjct: 64 LERKEWFISIVYDELSKLFGGDKEPNVNPTK-LPFIIMLVGVQGSGKTTTAGKLAYFYKR 122
Query: 128 KGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLI 187
+G+K LV AD +R A+DQL Q + +P YG + + IA +GV+TF K D+I
Sbjct: 123 RGYKVGLVAADVYRPAAYDQLLQLGNQIGVPVYGEPNNQNAIEIAKKGVDTFVKNKMDII 182
Query: 188 IVDTSGRHK--QEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAV 245
IVDT+GRH +E L EEM+++ EA PD VI V+D+SIGQ A+D A F Q+ +G++
Sbjct: 183 IVDTAGRHGYGEETKLLEEMKEIYEALKPDDVILVIDASIGQKAYDLASRFHQASPIGSI 242
Query: 246 IVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMD 305
I+TKMDG AKGGGALSAVAAT + + FIGTGE +DE E+F+ K +VSR+LGMGD ++
Sbjct: 243 IITKMDGTAKGGGALSAVAATGATIKFIGTGEKIDELEIFNAKRYVSRILGMGDIESILE 302
Query: 306 KIHEVVPMDQQPELLQKLSE--GNFTLRIMFS 335
K+ + ++ + ++ + E G TLR +++
Sbjct: 303 KVKGLEEYEKIQKKMEDVMEGKGKLTLRDVYA 334
>sp|C3MYM8|SRP54_SULIM Signal recognition particle 54 kDa protein OS=Sulfolobus islandicus
(strain M.14.25 / Kamchatka #1) GN=srp54 PE=3 SV=1
Length = 447
Score = 262 bits (669), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 136/332 (40%), Positives = 211/332 (63%), Gaps = 6/332 (1%)
Query: 9 SISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAG 68
+I A+++ + EK ++E + E+ ++L+ +DV KLV + IK+ +N + +
Sbjct: 4 NIRDAVRKFLTGSTPYEKAVDEFVKELQKSLISSDVNVKLVFSLTAKIKERLNKEKPPSV 63
Query: 69 HNKRRIIQQAIFNELCKMLDPGK-PSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQK 127
++ +++EL K+ K P+ P K P +IM VG+QGSGKTTT K AY++++
Sbjct: 64 LERKEWFISIVYDELSKLFGGDKEPNVNPTK-LPFIIMLVGVQGSGKTTTSGKLAYFYKR 122
Query: 128 KGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLI 187
+G+K LV AD +R A+DQL Q + +P YG + + IA +GV+TF K D+I
Sbjct: 123 RGYKVGLVAADVYRPAAYDQLLQLGNQIGVPVYGEPNNQNAIEIAKKGVDTFVKNKMDII 182
Query: 188 IVDTSGRHK--QEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAV 245
IVDT+GRH +E L EEM+++ EA PD VI V+D+SIGQ A+D A F Q+ +G++
Sbjct: 183 IVDTAGRHGYGEETKLLEEMKEIYEALKPDDVILVIDASIGQKAYDLASRFHQASPIGSI 242
Query: 246 IVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMD 305
I+TKMDG AKGGGALSAVAAT + + FIGTGE +DE E+F+ K +VSR+LGMGD ++
Sbjct: 243 IITKMDGTAKGGGALSAVAATGATIKFIGTGEKIDELEIFNAKRYVSRILGMGDIESILE 302
Query: 306 KIHEVVPMDQQPELLQKLSE--GNFTLRIMFS 335
K+ + ++ + ++ + E G TLR +++
Sbjct: 303 KVKGLEEYEKIQKKMEDVMEGKGKLTLRDVYA 334
>sp|C4KGX6|SRP54_SULIK Signal recognition particle 54 kDa protein OS=Sulfolobus islandicus
(strain M.16.4 / Kamchatka #3) GN=srp54 PE=3 SV=1
Length = 447
Score = 262 bits (669), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 136/332 (40%), Positives = 211/332 (63%), Gaps = 6/332 (1%)
Query: 9 SISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAG 68
+I A+++ + EK ++E + E+ ++L+ +DV KLV + IK+ +N + +
Sbjct: 4 NIRDAVRKFLTGSTPYEKAVDEFVKELQKSLISSDVNVKLVFSLTAKIKERLNKEKPPSV 63
Query: 69 HNKRRIIQQAIFNELCKMLDPGK-PSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQK 127
++ +++EL K+ K P+ P K P +IM VG+QGSGKTTT K AY++++
Sbjct: 64 LERKEWFISIVYDELSKLFGGDKEPNVNPTK-LPFIIMLVGVQGSGKTTTSGKLAYFYKR 122
Query: 128 KGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLI 187
+G+K LV AD +R A+DQL Q + +P YG + + IA +GV+TF K D+I
Sbjct: 123 RGYKVGLVAADVYRPAAYDQLLQLGNQIGVPVYGEPNNQNAIEIAKKGVDTFVKNKMDII 182
Query: 188 IVDTSGRHK--QEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAV 245
IVDT+GRH +E L EEM+++ EA PD VI V+D+SIGQ A+D A F Q+ +G++
Sbjct: 183 IVDTAGRHGYGEETKLLEEMKEIYEALKPDDVILVIDASIGQKAYDLASRFHQASPIGSI 242
Query: 246 IVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMD 305
I+TKMDG AKGGGALSAVAAT + + FIGTGE +DE E+F+ K +VSR+LGMGD ++
Sbjct: 243 IITKMDGTAKGGGALSAVAATGATIKFIGTGEKIDELEIFNAKRYVSRILGMGDIESILE 302
Query: 306 KIHEVVPMDQQPELLQKLSE--GNFTLRIMFS 335
K+ + ++ + ++ + E G TLR +++
Sbjct: 303 KVKGLEEYEKIQKKMEDVMEGKGKLTLRDVYA 334
>sp|C3N5B0|SRP54_SULIA Signal recognition particle 54 kDa protein OS=Sulfolobus islandicus
(strain M.16.27) GN=srp54 PE=3 SV=1
Length = 447
Score = 262 bits (669), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 136/332 (40%), Positives = 211/332 (63%), Gaps = 6/332 (1%)
Query: 9 SISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAG 68
+I A+++ + EK ++E + E+ ++L+ +DV KLV + IK+ +N + +
Sbjct: 4 NIRDAVRKFLTGSTPYEKAVDEFVKELQKSLISSDVNVKLVFSLTAKIKERLNKEKPPSV 63
Query: 69 HNKRRIIQQAIFNELCKMLDPGK-PSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQK 127
++ +++EL K+ K P+ P K P +IM VG+QGSGKTTT K AY++++
Sbjct: 64 LERKEWFISIVYDELSKLFGGDKEPNVNPTK-LPFIIMLVGVQGSGKTTTSGKLAYFYKR 122
Query: 128 KGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLI 187
+G+K LV AD +R A+DQL Q + +P YG + + IA +GV+TF K D+I
Sbjct: 123 RGYKVGLVAADVYRPAAYDQLLQLGNQIGVPVYGEPNNQNAIEIAKKGVDTFVKNKMDII 182
Query: 188 IVDTSGRHK--QEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAV 245
IVDT+GRH +E L EEM+++ EA PD VI V+D+SIGQ A+D A F Q+ +G++
Sbjct: 183 IVDTAGRHGYGEETKLLEEMKEIYEALKPDDVILVIDASIGQKAYDLASRFHQASPIGSI 242
Query: 246 IVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMD 305
I+TKMDG AKGGGALSAVAAT + + FIGTGE +DE E+F+ K +VSR+LGMGD ++
Sbjct: 243 IITKMDGTAKGGGALSAVAATGATIKFIGTGEKIDELEIFNAKRYVSRILGMGDIESILE 302
Query: 306 KIHEVVPMDQQPELLQKLSE--GNFTLRIMFS 335
K+ + ++ + ++ + E G TLR +++
Sbjct: 303 KVKGLEEYEKIQKKMEDVMEGKGKLTLRDVYA 334
>sp|C3NHT9|SRP54_SULIN Signal recognition particle 54 kDa protein OS=Sulfolobus islandicus
(strain Y.N.15.51 / Yellowstone #2) GN=srp54 PE=3 SV=1
Length = 447
Score = 261 bits (668), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 136/332 (40%), Positives = 211/332 (63%), Gaps = 6/332 (1%)
Query: 9 SISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAG 68
+I A+++ + EK ++E + E+ ++L+ +DV KLV + IK+ +N + +
Sbjct: 4 NIRDAVRKFLTRSTPYEKAVDEFIKELQKSLISSDVNVKLVFSLTAKIKERLNKEKPPSV 63
Query: 69 HNKRRIIQQAIFNELCKMLDPGK-PSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQK 127
++ +++EL K+ K P+ P K P +IM VG+QGSGKTTT K AY++++
Sbjct: 64 LERKEWFISIVYDELSKLFGGDKEPNVNPTK-LPFIIMLVGVQGSGKTTTAGKLAYFYKR 122
Query: 128 KGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLI 187
+G+K LV AD +R A+DQL Q + +P YG + + IA +GV+TF K D+I
Sbjct: 123 RGYKVGLVAADVYRPAAYDQLLQLGNQIGVPVYGEPNNQNAIEIAKKGVDTFVKNKMDII 182
Query: 188 IVDTSGRHK--QEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAV 245
IVDT+GRH +E L EEM+++ EA PD VI V+D+SIGQ A+D A F Q+ +G++
Sbjct: 183 IVDTAGRHGYGEETKLLEEMKEIYEALKPDDVILVIDASIGQKAYDLASRFHQASPIGSI 242
Query: 246 IVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMD 305
I+TKMDG AKGGGALSAVAAT + + FIGTGE +DE E+F+ K +VSR+LGMGD ++
Sbjct: 243 IITKMDGTAKGGGALSAVAATGATIKFIGTGEKIDELEIFNAKRYVSRILGMGDIESILE 302
Query: 306 KIHEVVPMDQQPELLQKLSE--GNFTLRIMFS 335
K+ + ++ + ++ + E G TLR +++
Sbjct: 303 KVKGLEEYEKIQKKMEDVMEGKGKLTLRDVYA 334
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120,539,858
Number of Sequences: 539616
Number of extensions: 5011158
Number of successful extensions: 17652
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 17266
Number of HSP's gapped (non-prelim): 246
length of query: 344
length of database: 191,569,459
effective HSP length: 118
effective length of query: 226
effective length of database: 127,894,771
effective search space: 28904218246
effective search space used: 28904218246
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)