Query 019214
Match_columns 344
No_of_seqs 265 out of 3106
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 07:38:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019214.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019214hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0541 Ffh Signal recognition 100.0 3E-59 6.6E-64 433.2 38.4 340 2-342 1-340 (451)
2 KOG0780 Signal recognition par 100.0 1.3E-56 2.7E-61 406.4 33.7 340 1-342 1-340 (483)
3 TIGR01425 SRP54_euk signal rec 100.0 5.3E-56 1.2E-60 421.5 38.8 340 2-342 1-340 (429)
4 PRK10867 signal recognition pa 100.0 3.2E-52 7E-57 398.2 38.8 339 3-342 2-341 (433)
5 TIGR00959 ffh signal recogniti 100.0 3.9E-51 8.4E-56 390.8 38.9 339 3-342 1-340 (428)
6 PRK00771 signal recognition pa 100.0 2.5E-50 5.4E-55 386.1 37.5 333 6-342 1-333 (437)
7 COG0552 FtsY Signal recognitio 100.0 8.8E-43 1.9E-47 314.9 29.5 269 24-296 61-340 (340)
8 PRK14974 cell division protein 100.0 5.9E-41 1.3E-45 311.7 33.9 275 23-297 58-336 (336)
9 PRK10416 signal recognition pa 100.0 1.2E-39 2.5E-44 302.4 34.4 287 3-297 24-316 (318)
10 TIGR00064 ftsY signal recognit 100.0 3E-38 6.6E-43 287.4 31.1 262 29-294 4-271 (272)
11 PF00448 SRP54: SRP54-type pro 100.0 6.9E-38 1.5E-42 271.9 22.1 196 101-296 1-196 (196)
12 KOG0781 Signal recognition par 100.0 1.4E-35 3.1E-40 275.5 24.1 292 4-295 274-586 (587)
13 PRK11889 flhF flagellar biosyn 100.0 1.7E-33 3.7E-38 261.8 30.3 257 28-297 176-435 (436)
14 PRK12726 flagellar biosynthesi 100.0 3.8E-33 8.2E-38 258.9 31.3 278 5-298 121-401 (407)
15 PRK12723 flagellar biosynthesi 100.0 9.9E-33 2.1E-37 261.0 33.7 266 30-309 109-381 (388)
16 PRK12724 flagellar biosynthesi 100.0 1.6E-32 3.4E-37 258.7 31.1 262 22-295 147-415 (432)
17 COG1419 FlhF Flagellar GTP-bin 100.0 4.5E-32 9.7E-37 252.2 28.0 191 101-298 203-397 (407)
18 PRK14723 flhF flagellar biosyn 100.0 1.7E-31 3.7E-36 268.0 31.6 252 29-297 124-381 (767)
19 PRK05703 flhF flagellar biosyn 100.0 1.9E-31 4.2E-36 256.6 30.3 256 25-298 156-416 (424)
20 PRK06995 flhF flagellar biosyn 100.0 9.2E-31 2E-35 252.6 29.9 274 4-298 173-450 (484)
21 PRK14722 flhF flagellar biosyn 100.0 1.1E-30 2.4E-35 245.1 29.2 253 30-296 74-338 (374)
22 PRK06731 flhF flagellar biosyn 100.0 1.1E-29 2.3E-34 229.7 26.6 258 26-297 9-269 (270)
23 PRK14721 flhF flagellar biosyn 100.0 3.3E-29 7.1E-34 238.6 28.9 251 29-298 131-385 (420)
24 PRK12727 flagellar biosynthesi 100.0 4.5E-28 9.8E-33 233.6 27.2 252 23-295 285-540 (559)
25 cd03115 SRP The signal recogni 99.9 3.6E-24 7.8E-29 183.1 20.9 172 103-274 2-173 (173)
26 COG0486 ThdF Predicted GTPase 99.9 3.8E-23 8.2E-28 194.8 9.9 227 2-312 145-376 (454)
27 COG1159 Era GTPase [General fu 99.9 1.5E-21 3.2E-26 174.5 10.7 188 100-336 5-203 (298)
28 TIGR03499 FlhF flagellar biosy 99.8 4.8E-19 1E-23 162.6 16.8 150 27-193 131-282 (282)
29 COG1160 Predicted GTPases [Gen 99.8 1.1E-18 2.3E-23 164.5 14.4 157 102-312 4-165 (444)
30 PRK09435 membrane ATPase/prote 99.8 6.4E-18 1.4E-22 157.2 14.5 193 99-311 54-259 (332)
31 COG1703 ArgK Putative periplas 99.8 2.4E-17 5.1E-22 147.3 16.6 196 98-311 48-253 (323)
32 PF03308 ArgK: ArgK protein; 99.7 1.9E-18 4.2E-23 152.5 7.6 192 99-312 27-230 (266)
33 COG1160 Predicted GTPases [Gen 99.7 2.5E-17 5.4E-22 155.2 10.3 191 77-313 154-352 (444)
34 TIGR00436 era GTP-binding prot 99.7 4E-17 8.6E-22 149.4 11.0 161 103-313 2-165 (270)
35 PRK05291 trmE tRNA modificatio 99.7 1.5E-17 3.2E-22 162.2 8.4 223 2-312 143-370 (449)
36 COG0378 HypB Ni2+-binding GTPa 99.7 1.7E-17 3.7E-22 139.9 7.3 180 102-310 14-199 (202)
37 PRK00089 era GTPase Era; Revie 99.7 9.2E-17 2E-21 148.7 11.3 165 100-313 4-172 (292)
38 TIGR00750 lao LAO/AO transport 99.7 1.6E-15 3.4E-20 140.8 17.9 195 99-311 32-237 (300)
39 PF02421 FeoB_N: Ferrous iron 99.7 2.5E-16 5.4E-21 131.0 8.4 150 103-307 2-156 (156)
40 PRK15494 era GTPase Era; Provi 99.6 2E-15 4.2E-20 142.3 11.4 184 101-336 52-247 (339)
41 PRK13768 GTPase; Provisional 99.6 3.5E-15 7.7E-20 135.0 12.5 211 102-313 3-248 (253)
42 TIGR03156 GTP_HflX GTP-binding 99.6 4.1E-15 8.8E-20 140.5 11.8 154 101-310 189-350 (351)
43 TIGR00450 mnmE_trmE_thdF tRNA 99.6 9.5E-15 2.1E-19 141.9 13.5 202 2-274 135-342 (442)
44 KOG1191 Mitochondrial GTPase [ 99.6 4.1E-15 9E-20 140.4 9.2 186 79-312 248-450 (531)
45 cd04163 Era Era subfamily. Er 99.6 1.5E-14 3.2E-19 121.1 11.7 161 101-310 3-167 (168)
46 COG3640 CooC CO dehydrogenase 99.6 9.1E-14 2E-18 120.4 16.1 175 103-298 2-232 (255)
47 PRK10463 hydrogenase nickel in 99.6 2.6E-14 5.7E-19 129.9 11.5 181 100-310 103-287 (290)
48 TIGR00073 hypB hydrogenase acc 99.6 3.6E-14 7.9E-19 124.8 11.8 184 99-311 20-206 (207)
49 cd03114 ArgK-like The function 99.6 6E-14 1.3E-18 116.6 12.4 136 104-251 2-148 (148)
50 TIGR03594 GTPase_EngA ribosome 99.5 8.3E-14 1.8E-18 135.8 12.7 157 103-313 1-161 (429)
51 KOG1423 Ras-like GTPase ERA [C 99.5 5.9E-14 1.3E-18 125.4 10.2 176 99-312 70-271 (379)
52 cd01894 EngA1 EngA1 subfamily. 99.5 2.7E-13 5.8E-18 112.8 11.7 152 105-310 1-156 (157)
53 PF07015 VirC1: VirC1 protein; 99.5 2.1E-12 4.6E-17 113.0 17.6 215 102-343 2-230 (231)
54 PRK03003 GTP-binding protein D 99.5 1.8E-13 3.8E-18 134.8 12.2 158 102-313 39-200 (472)
55 cd02037 MRP-like MRP (Multiple 99.5 8.4E-13 1.8E-17 112.3 14.7 128 104-252 2-133 (169)
56 PRK03003 GTP-binding protein D 99.5 2.8E-13 6.1E-18 133.4 13.4 164 100-312 210-382 (472)
57 PRK11058 GTPase HflX; Provisio 99.5 5.5E-13 1.2E-17 129.0 14.8 157 102-312 198-362 (426)
58 TIGR03594 GTPase_EngA ribosome 99.5 7E-13 1.5E-17 129.3 15.3 187 78-311 150-343 (429)
59 cd02117 NifH_like This family 99.5 5.6E-13 1.2E-17 117.6 13.1 164 102-272 1-207 (212)
60 PHA02518 ParA-like protein; Pr 99.5 1.9E-12 4.2E-17 113.7 16.4 154 102-271 1-165 (211)
61 cd01895 EngA2 EngA2 subfamily. 99.5 5.4E-13 1.2E-17 112.6 11.7 160 102-310 3-173 (174)
62 cd04164 trmE TrmE (MnmE, ThdF, 99.5 4.4E-13 9.5E-18 111.4 10.9 151 102-311 2-156 (157)
63 PRK00093 GTP-binding protein D 99.5 6.3E-13 1.4E-17 129.8 12.9 156 102-311 2-161 (435)
64 PRK09518 bifunctional cytidyla 99.4 9.1E-13 2E-17 135.8 14.1 164 101-312 450-621 (712)
65 PRK00093 GTP-binding protein D 99.4 1.4E-12 3E-17 127.4 14.6 163 100-311 172-343 (435)
66 PRK13849 putative crown gall t 99.4 7.5E-12 1.6E-16 111.6 17.7 140 102-252 2-152 (231)
67 PF10662 PduV-EutP: Ethanolami 99.4 3.3E-13 7.2E-18 109.9 7.8 137 102-309 2-143 (143)
68 PRK12298 obgE GTPase CgtA; Rev 99.4 4.3E-13 9.4E-18 128.2 8.9 160 103-313 161-334 (390)
69 TIGR00101 ureG urease accessor 99.4 1.4E-12 3E-17 113.8 11.3 185 101-312 1-196 (199)
70 PRK09866 hypothetical protein; 99.4 2.1E-12 4.5E-17 127.1 13.0 113 183-310 229-351 (741)
71 PRK09518 bifunctional cytidyla 99.4 1E-12 2.2E-17 135.4 11.4 158 102-313 276-437 (712)
72 cd03110 Fer4_NifH_child This p 99.4 1.9E-11 4.1E-16 104.8 17.6 157 104-272 3-176 (179)
73 cd00881 GTP_translation_factor 99.4 2.7E-12 5.7E-17 110.3 12.0 181 104-312 2-187 (189)
74 cd01878 HflX HflX subfamily. 99.4 2.4E-12 5.2E-17 112.7 11.9 154 102-310 42-203 (204)
75 PF03029 ATP_bind_1: Conserved 99.4 5.1E-13 1.1E-17 119.6 7.0 200 106-310 1-235 (238)
76 cd01898 Obg Obg subfamily. Th 99.4 2.3E-12 5E-17 109.0 10.6 153 104-310 3-169 (170)
77 cd02040 NifH NifH gene encodes 99.4 1.1E-11 2.3E-16 113.3 14.8 41 102-142 2-42 (270)
78 PRK15467 ethanolamine utilizat 99.4 1.8E-12 4E-17 109.0 8.6 145 102-313 2-148 (158)
79 PRK13185 chlL protochlorophyll 99.4 1.9E-11 4.1E-16 111.9 15.9 161 102-272 3-203 (270)
80 PRK13235 nifH nitrogenase redu 99.4 8.3E-12 1.8E-16 114.5 13.3 41 102-142 2-42 (274)
81 COG0370 FeoB Fe2+ transport sy 99.4 5.8E-12 1.3E-16 124.3 12.4 186 102-326 4-202 (653)
82 TIGR01007 eps_fam capsular exo 99.4 4.2E-11 9.2E-16 105.0 16.7 145 101-253 17-193 (204)
83 TIGR01969 minD_arch cell divis 99.4 3.7E-11 7.9E-16 108.5 16.7 142 103-253 2-173 (251)
84 CHL00072 chlL photochlorophyll 99.4 3.1E-11 6.8E-16 111.4 16.5 159 104-272 3-201 (290)
85 cd02032 Bchl_like This family 99.4 2.2E-11 4.8E-16 111.2 15.3 160 103-272 2-201 (267)
86 KOG1532 GTPase XAB1, interacts 99.4 4.7E-12 1E-16 111.8 10.2 208 99-312 17-264 (366)
87 CHL00175 minD septum-site dete 99.3 9.3E-11 2E-15 107.9 19.4 146 100-253 14-191 (281)
88 cd01887 IF2_eIF5B IF2/eIF5B (i 99.3 9.7E-12 2.1E-16 104.8 11.8 161 103-311 2-165 (168)
89 PRK13232 nifH nitrogenase redu 99.3 1.5E-11 3.2E-16 112.8 13.5 41 102-142 2-42 (273)
90 PF00009 GTP_EFTU: Elongation 99.3 7.4E-13 1.6E-17 114.6 4.6 173 101-312 3-187 (188)
91 PRK11670 antiporter inner memb 99.3 5.5E-11 1.2E-15 113.2 17.8 148 100-253 106-282 (369)
92 TIGR03598 GTPase_YsxC ribosome 99.3 4.5E-12 9.8E-17 108.7 9.4 118 100-255 17-144 (179)
93 PF01656 CbiA: CobQ/CobB/MinD/ 99.3 7E-12 1.5E-16 108.6 10.4 141 105-253 3-161 (195)
94 smart00053 DYNc Dynamin, GTPas 99.3 1.7E-11 3.6E-16 109.5 12.8 154 102-265 27-217 (240)
95 PF01926 MMR_HSR1: 50S ribosom 99.3 1.2E-11 2.6E-16 98.3 10.6 110 104-249 2-116 (116)
96 COG1084 Predicted GTPase [Gene 99.3 9.4E-11 2E-15 106.4 17.3 119 101-255 168-295 (346)
97 PRK13230 nitrogenase reductase 99.3 2.3E-11 5E-16 111.9 13.8 40 102-141 2-41 (279)
98 COG0218 Predicted GTPase [Gene 99.3 1.6E-11 3.5E-16 104.7 11.6 161 100-312 23-197 (200)
99 cd02036 MinD Bacterial cell di 99.3 1.1E-10 2.3E-15 99.8 17.0 140 104-271 2-147 (179)
100 TIGR01281 DPOR_bchL light-inde 99.3 1.9E-11 4.2E-16 111.7 12.5 160 103-272 2-201 (268)
101 TIGR03371 cellulose_yhjQ cellu 99.3 1E-10 2.2E-15 105.3 17.1 146 102-255 2-183 (246)
102 cd00880 Era_like Era (E. coli 99.3 1.4E-11 2.9E-16 101.8 10.4 157 106-310 1-162 (163)
103 PRK12299 obgE GTPase CgtA; Rev 99.3 5E-12 1.1E-16 118.7 8.3 157 103-312 160-328 (335)
104 PRK09554 feoB ferrous iron tra 99.3 1.8E-11 3.8E-16 126.2 12.8 145 102-282 4-159 (772)
105 TIGR03018 pepcterm_TyrKin exop 99.3 4E-10 8.7E-15 99.0 19.7 140 100-248 34-207 (207)
106 cd02033 BchX Chlorophyllide re 99.3 1.4E-10 3.1E-15 108.1 17.2 44 99-142 29-72 (329)
107 cd01897 NOG NOG1 is a nucleola 99.3 2.3E-11 4.9E-16 102.7 10.8 154 103-311 2-167 (168)
108 cd04171 SelB SelB subfamily. 99.3 2.4E-11 5.3E-16 101.8 10.9 156 103-309 2-163 (164)
109 COG2262 HflX GTPases [General 99.3 1.6E-11 3.4E-16 114.6 10.3 158 100-312 191-356 (411)
110 TIGR01287 nifH nitrogenase iro 99.3 4.6E-11 1E-15 109.6 13.4 41 102-142 1-41 (275)
111 cd01879 FeoB Ferrous iron tran 99.3 1E-11 2.2E-16 103.6 8.1 110 183-311 42-156 (158)
112 cd01890 LepA LepA subfamily. 99.3 3.2E-11 7E-16 102.9 11.3 108 183-312 66-177 (179)
113 cd02035 ArsA ArsA ATPase funct 99.3 9.2E-11 2E-15 103.9 14.0 148 103-253 1-183 (217)
114 PRK04213 GTP-binding protein; 99.3 4.3E-11 9.3E-16 104.4 11.6 162 101-313 9-193 (201)
115 TIGR03029 EpsG chain length de 99.3 2.1E-10 4.5E-15 105.2 16.6 142 100-249 102-274 (274)
116 TIGR02016 BchX chlorophyllide 99.3 7.7E-11 1.7E-15 109.1 13.6 164 102-273 1-212 (296)
117 cd01891 TypA_BipA TypA (tyrosi 99.3 1.7E-10 3.7E-15 100.2 14.9 113 183-312 64-192 (194)
118 PRK12296 obgE GTPase CgtA; Rev 99.3 1.3E-11 2.8E-16 120.5 8.7 152 103-311 161-339 (500)
119 PRK13233 nifH nitrogenase redu 99.3 1.3E-10 2.8E-15 106.7 14.6 42 102-143 3-45 (275)
120 PRK13234 nifH nitrogenase redu 99.3 1.2E-10 2.5E-15 108.0 14.3 42 101-142 4-45 (295)
121 PF06564 YhjQ: YhjQ protein; 99.2 3.4E-10 7.3E-15 100.7 16.3 148 102-260 2-183 (243)
122 TIGR02528 EutP ethanolamine ut 99.2 1.3E-11 2.8E-16 101.5 6.7 135 103-308 2-141 (142)
123 cd04165 GTPBP1_like GTPBP1-lik 99.2 3.9E-11 8.5E-16 106.6 10.2 195 104-309 2-220 (224)
124 PRK12297 obgE GTPase CgtA; Rev 99.2 3.4E-11 7.4E-16 116.0 10.4 153 103-311 160-326 (424)
125 PRK10037 cell division protein 99.2 1.8E-10 3.8E-15 104.3 14.4 143 102-255 2-178 (250)
126 PRK13869 plasmid-partitioning 99.2 2.7E-10 5.9E-15 109.9 16.1 43 100-142 120-163 (405)
127 smart00178 SAR Sar1p-like memb 99.2 1E-10 2.2E-15 100.8 11.6 159 102-310 18-183 (184)
128 TIGR01968 minD_bact septum sit 99.2 5E-10 1.1E-14 101.6 16.7 143 102-253 2-176 (261)
129 cd01884 EF_Tu EF-Tu subfamily. 99.2 8E-10 1.7E-14 96.2 17.1 125 102-254 3-132 (195)
130 TIGR02729 Obg_CgtA Obg family 99.2 2.5E-11 5.4E-16 113.8 8.2 155 103-311 159-328 (329)
131 PRK10818 cell division inhibit 99.2 8.6E-10 1.9E-14 100.9 17.9 162 102-271 3-208 (270)
132 COG2894 MinD Septum formation 99.2 2.6E-10 5.6E-15 97.9 13.2 163 102-273 3-209 (272)
133 cd01852 AIG1 AIG1 (avrRpt2-ind 99.2 8.3E-11 1.8E-15 102.5 10.5 118 103-254 2-130 (196)
134 COG0489 Mrp ATPases involved i 99.2 2.6E-10 5.7E-15 103.7 13.8 145 102-254 58-233 (265)
135 PRK13236 nitrogenase reductase 99.2 4E-10 8.8E-15 104.4 15.1 42 100-141 5-46 (296)
136 cd02038 FleN-like FleN is a me 99.2 3.4E-10 7.4E-15 93.1 13.0 112 104-261 2-118 (139)
137 cd04160 Arfrp1 Arfrp1 subfamil 99.2 1.2E-10 2.5E-15 98.3 10.4 108 183-309 49-166 (167)
138 cd03111 CpaE_like This protein 99.2 3E-10 6.4E-15 89.0 11.8 74 104-226 2-77 (106)
139 PRK00454 engB GTP-binding prot 99.2 2.1E-10 4.6E-15 99.4 12.1 159 101-312 24-194 (196)
140 PRK11519 tyrosine kinase; Prov 99.2 8.2E-10 1.8E-14 114.2 18.5 147 100-254 525-702 (719)
141 cd00550 ArsA_ATPase Oxyanion-t 99.2 3.2E-10 7E-15 102.8 13.8 39 102-140 1-39 (254)
142 TIGR03453 partition_RepA plasm 99.2 1.5E-09 3.2E-14 104.5 19.1 136 3-142 4-146 (387)
143 PHA02519 plasmid partition pro 99.2 3.6E-10 7.8E-15 108.2 14.7 44 99-142 104-149 (387)
144 cd04166 CysN_ATPS CysN_ATPS su 99.2 3.8E-10 8.2E-15 99.3 13.8 66 183-254 76-144 (208)
145 PRK13231 nitrogenase reductase 99.2 1.6E-10 3.4E-15 105.4 11.7 40 102-142 3-42 (264)
146 TIGR00437 feoB ferrous iron tr 99.2 1.8E-10 4E-15 116.0 12.9 131 108-274 1-136 (591)
147 cd04156 ARLTS1 ARLTS1 subfamil 99.2 2.1E-10 4.5E-15 96.0 11.1 151 104-309 2-159 (160)
148 cd01881 Obg_like The Obg-like 99.2 7.8E-11 1.7E-15 100.0 8.5 152 106-310 1-175 (176)
149 PF02492 cobW: CobW/HypB/UreG, 99.2 2.5E-10 5.4E-15 98.0 11.3 148 103-256 2-157 (178)
150 PRK09841 cryptic autophosphory 99.2 1.1E-09 2.4E-14 113.3 18.0 148 100-255 530-708 (726)
151 cd03112 CobW_like The function 99.2 5.9E-10 1.3E-14 93.7 13.2 144 103-252 2-158 (158)
152 PRK13705 plasmid-partitioning 99.2 1.2E-09 2.7E-14 104.7 16.5 44 99-142 104-149 (388)
153 PF09140 MipZ: ATPase MipZ; I 99.2 1.6E-10 3.5E-15 101.8 9.3 113 103-224 2-131 (261)
154 cd04154 Arl2 Arl2 subfamily. 99.2 3.8E-10 8.3E-15 96.0 11.5 148 102-308 15-171 (173)
155 TIGR03815 CpaE_hom_Actino heli 99.1 3.5E-09 7.7E-14 99.4 19.0 161 100-271 92-284 (322)
156 cd01889 SelB_euk SelB subfamil 99.1 8.9E-11 1.9E-15 101.9 7.5 114 183-312 67-186 (192)
157 cd02042 ParA ParA and ParB of 99.1 6.9E-10 1.5E-14 86.4 11.3 73 103-226 1-74 (104)
158 cd04155 Arl3 Arl3 subfamily. 99.1 3.2E-10 7E-15 96.2 9.8 151 101-309 14-172 (173)
159 cd04159 Arl10_like Arl10-like 99.1 4.6E-10 1E-14 93.0 10.2 149 104-309 2-158 (159)
160 cd01896 DRG The developmentall 99.1 1.7E-10 3.7E-15 103.2 7.9 87 103-227 2-91 (233)
161 cd01886 EF-G Elongation factor 99.1 7.7E-10 1.7E-14 101.1 12.2 127 104-254 2-130 (270)
162 TIGR01005 eps_transp_fam exopo 99.1 1.5E-09 3.2E-14 113.2 15.9 147 100-254 545-722 (754)
163 cd00879 Sar1 Sar1 subfamily. 99.1 4.5E-10 9.8E-15 97.0 10.0 162 102-310 20-189 (190)
164 cd01853 Toc34_like Toc34-like 99.1 8.4E-10 1.8E-14 99.5 11.9 121 100-255 30-164 (249)
165 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.1 6.8E-10 1.5E-14 94.7 10.7 151 102-309 16-173 (174)
166 cd04157 Arl6 Arl6 subfamily. 99.1 5.9E-10 1.3E-14 93.3 10.1 108 183-309 44-161 (162)
167 cd01876 YihA_EngB The YihA (En 99.1 6.9E-10 1.5E-14 92.9 10.6 157 104-311 2-170 (170)
168 COG1192 Soj ATPases involved i 99.1 1.6E-09 3.4E-14 98.6 13.6 43 101-143 2-46 (259)
169 cd04158 ARD1 ARD1 subfamily. 99.1 9.8E-10 2.1E-14 93.2 11.3 150 104-313 2-162 (169)
170 TIGR00231 small_GTP small GTP- 99.1 5.9E-10 1.3E-14 91.9 9.2 155 102-308 2-160 (161)
171 cd01864 Rab19 Rab19 subfamily. 99.1 2.4E-10 5.3E-15 96.3 7.0 103 184-310 52-164 (165)
172 cd04170 EF-G_bact Elongation f 99.1 5.5E-09 1.2E-13 95.5 16.4 86 183-274 63-152 (268)
173 cd04149 Arf6 Arf6 subfamily. 99.1 9.1E-10 2E-14 93.4 10.5 149 102-309 10-167 (168)
174 cd04168 TetM_like Tet(M)-like 99.1 5.8E-09 1.3E-13 93.5 16.1 137 183-342 63-204 (237)
175 TIGR00491 aIF-2 translation in 99.1 6.7E-10 1.4E-14 111.3 11.0 116 185-310 70-214 (590)
176 cd04151 Arl1 Arl1 subfamily. 99.1 8E-10 1.7E-14 92.5 9.8 109 183-309 42-157 (158)
177 cd01888 eIF2_gamma eIF2-gamma 99.1 4.7E-10 1E-14 98.3 8.5 112 184-313 83-200 (203)
178 cd00154 Rab Rab family. Rab G 99.1 2.5E-10 5.4E-15 94.5 6.3 147 103-308 2-158 (159)
179 COG1163 DRG Predicted GTPase [ 99.1 1.4E-09 3.1E-14 98.6 11.2 100 93-228 55-155 (365)
180 cd04104 p47_IIGP_like p47 (47- 99.1 5.3E-10 1.2E-14 97.5 8.4 70 184-254 52-121 (197)
181 cd00878 Arf_Arl Arf (ADP-ribos 99.1 1.3E-09 2.8E-14 91.1 10.2 149 104-309 2-157 (158)
182 cd04145 M_R_Ras_like M-Ras/R-R 99.1 7.2E-10 1.6E-14 92.9 8.8 103 184-311 50-163 (164)
183 cd04142 RRP22 RRP22 subfamily. 99.1 4.5E-10 9.8E-15 98.0 7.7 111 184-311 49-173 (198)
184 TIGR00487 IF-2 translation ini 99.0 1.1E-09 2.3E-14 110.0 11.2 160 99-309 85-247 (587)
185 smart00173 RAS Ras subfamily o 99.0 5E-10 1.1E-14 94.1 7.5 104 183-311 47-161 (164)
186 cd01861 Rab6 Rab6 subfamily. 99.0 3E-10 6.6E-15 95.1 5.8 149 103-310 2-160 (161)
187 cd01860 Rab5_related Rab5-rela 99.0 3.6E-10 7.9E-15 94.8 6.2 150 103-311 3-162 (163)
188 smart00177 ARF ARF-like small 99.0 2.4E-09 5.2E-14 91.5 11.0 152 102-311 14-173 (175)
189 cd01863 Rab18 Rab18 subfamily. 99.0 1.2E-09 2.7E-14 91.4 9.0 103 183-310 48-160 (161)
190 smart00175 RAB Rab subfamily o 99.0 4.6E-09 9.9E-14 88.0 12.3 103 184-311 49-161 (164)
191 cd04161 Arl2l1_Arl13_like Arl2 99.0 1.8E-09 3.9E-14 91.5 9.8 111 183-309 42-166 (167)
192 cd04139 RalA_RalB RalA/RalB su 99.0 3.6E-09 7.7E-14 88.6 11.5 104 183-311 47-161 (164)
193 TIGR00991 3a0901s02IAP34 GTP-b 99.0 5.4E-09 1.2E-13 96.0 13.5 120 100-254 37-167 (313)
194 cd04113 Rab4 Rab4 subfamily. 99.0 4.4E-10 9.5E-15 94.2 5.8 103 183-310 48-160 (161)
195 COG0455 flhG Antiactivator of 99.0 1.4E-08 3.1E-13 91.9 15.8 146 101-255 2-181 (262)
196 PRK04004 translation initiatio 99.0 1.8E-09 3.8E-14 108.6 10.8 114 185-308 72-214 (586)
197 cd01893 Miro1 Miro1 subfamily. 99.0 2.5E-09 5.4E-14 90.3 10.2 107 183-311 46-163 (166)
198 cd04124 RabL2 RabL2 subfamily. 99.0 1.2E-09 2.6E-14 91.9 8.2 104 183-311 48-157 (161)
199 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.0 4E-09 8.7E-14 90.7 11.5 109 183-311 51-169 (183)
200 PRK12736 elongation factor Tu; 99.0 2.3E-09 4.9E-14 103.4 10.9 127 100-254 11-142 (394)
201 cd04150 Arf1_5_like Arf1-Arf5- 99.0 3.6E-09 7.9E-14 88.9 10.9 108 183-309 43-158 (159)
202 PTZ00133 ADP-ribosylation fact 99.0 3.1E-09 6.7E-14 91.4 10.6 152 102-311 18-177 (182)
203 PRK12735 elongation factor Tu; 99.0 8.7E-09 1.9E-13 99.4 14.8 127 100-254 11-142 (396)
204 cd04138 H_N_K_Ras_like H-Ras/N 99.0 2.6E-09 5.5E-14 89.2 9.7 102 184-310 49-160 (162)
205 cd00876 Ras Ras family. The R 99.0 1E-09 2.2E-14 91.4 7.2 103 183-310 46-159 (160)
206 smart00174 RHO Rho (Ras homolo 99.0 3.5E-10 7.5E-15 96.1 4.1 121 183-311 45-171 (174)
207 cd04119 RJL RJL (RabJ-Like) su 99.0 1.1E-09 2.5E-14 91.9 7.2 103 183-310 48-165 (168)
208 CHL00071 tufA elongation facto 99.0 3.9E-09 8.4E-14 102.3 11.8 128 100-255 11-143 (409)
209 cd04136 Rap_like Rap-like subf 99.0 1.3E-09 2.8E-14 91.3 7.5 106 184-310 49-161 (163)
210 PRK05306 infB translation init 99.0 2.4E-09 5.3E-14 110.2 10.8 159 99-309 288-449 (787)
211 PRK00049 elongation factor Tu; 99.0 5.1E-09 1.1E-13 100.9 12.5 127 100-254 11-142 (396)
212 PRK11537 putative GTP-binding 99.0 4.6E-09 1E-13 98.0 11.7 171 101-276 4-188 (318)
213 cd04169 RF3 RF3 subfamily. Pe 99.0 1.7E-08 3.6E-13 92.2 15.1 149 102-273 3-158 (267)
214 cd04147 Ras_dva Ras-dva subfam 99.0 1.2E-09 2.7E-14 95.2 7.4 110 184-313 47-164 (198)
215 PLN03118 Rab family protein; P 99.0 7.6E-10 1.7E-14 97.5 6.1 151 101-312 14-177 (211)
216 cd04137 RheB Rheb (Ras Homolog 99.0 6E-10 1.3E-14 95.3 5.2 150 102-311 2-162 (180)
217 CHL00189 infB translation init 99.0 2.2E-09 4.8E-14 109.6 9.8 165 99-311 242-409 (742)
218 cd01867 Rab8_Rab10_Rab13_like 99.0 9.1E-10 2E-14 93.1 6.0 149 102-311 4-164 (167)
219 PRK12317 elongation factor 1-a 99.0 2.8E-09 6.2E-14 103.8 10.1 67 182-254 82-153 (425)
220 cd04135 Tc10 TC10 subfamily. 99.0 4.8E-10 1E-14 95.2 4.1 120 183-310 47-172 (174)
221 cd01865 Rab3 Rab3 subfamily. 99.0 1.1E-08 2.3E-13 86.4 12.3 148 103-311 3-162 (165)
222 cd04140 ARHI_like ARHI subfami 99.0 5.6E-09 1.2E-13 88.1 10.6 103 183-310 48-163 (165)
223 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.0 1.7E-08 3.6E-13 85.0 13.4 104 183-311 50-163 (166)
224 cd01866 Rab2 Rab2 subfamily. 99.0 9.6E-10 2.1E-14 93.1 5.8 151 102-311 5-165 (168)
225 PLN00223 ADP-ribosylation fact 99.0 6.9E-09 1.5E-13 89.2 11.1 152 102-311 18-177 (181)
226 cd04101 RabL4 RabL4 (Rab-like4 99.0 3.8E-09 8.3E-14 88.7 9.3 103 183-310 51-162 (164)
227 cd04112 Rab26 Rab26 subfamily. 99.0 3.4E-09 7.3E-14 91.8 9.2 105 183-312 49-163 (191)
228 cd01883 EF1_alpha Eukaryotic e 98.9 6.2E-10 1.3E-14 98.7 4.3 65 183-253 76-150 (219)
229 cd01868 Rab11_like Rab11-like. 98.9 2.2E-08 4.8E-13 84.2 13.3 150 102-310 4-163 (165)
230 TIGR00475 selB selenocysteine- 98.9 2.5E-09 5.5E-14 107.6 8.8 160 103-312 2-166 (581)
231 cd04114 Rab30 Rab30 subfamily. 98.9 1.3E-09 2.8E-14 92.0 5.6 103 184-310 56-167 (169)
232 TIGR01393 lepA GTP-binding pro 98.9 1E-08 2.2E-13 103.5 12.7 108 183-313 69-181 (595)
233 cd00157 Rho Rho (Ras homology) 98.9 5.2E-10 1.1E-14 94.5 2.9 118 183-309 47-170 (171)
234 cd04127 Rab27A Rab27a subfamil 98.9 6.6E-09 1.4E-13 88.7 9.8 103 183-310 62-175 (180)
235 cd01870 RhoA_like RhoA-like su 98.9 9.3E-10 2E-14 93.5 4.4 120 183-310 48-173 (175)
236 cd00877 Ran Ran (Ras-related n 98.9 4.5E-09 9.8E-14 88.9 8.3 104 183-311 48-158 (166)
237 cd01862 Rab7 Rab7 subfamily. 98.9 1.7E-09 3.6E-14 91.5 5.7 104 184-311 49-166 (172)
238 cd02034 CooC The accessory pro 98.9 5.3E-09 1.2E-13 83.1 8.2 87 104-194 2-97 (116)
239 cd04110 Rab35 Rab35 subfamily. 98.9 2.3E-09 4.9E-14 93.6 6.6 151 102-311 7-166 (199)
240 KOG1489 Predicted GTP-binding 98.9 6E-09 1.3E-13 94.2 9.3 150 104-310 199-365 (366)
241 cd04107 Rab32_Rab38 Rab38/Rab3 98.9 9.6E-09 2.1E-13 89.7 10.3 105 183-311 49-167 (201)
242 TIGR00485 EF-Tu translation el 98.9 1.8E-08 3.9E-13 97.2 13.0 128 100-255 11-143 (394)
243 COG0003 ArsA Predicted ATPase 98.9 3.6E-09 7.8E-14 98.2 7.8 39 101-139 2-40 (322)
244 cd04123 Rab21 Rab21 subfamily. 98.9 3.4E-09 7.4E-14 88.4 6.9 103 183-310 48-160 (162)
245 cd04109 Rab28 Rab28 subfamily. 98.9 2.7E-09 5.8E-14 94.3 6.4 104 183-311 49-165 (215)
246 cd04148 RGK RGK subfamily. Th 98.9 4.1E-09 9E-14 93.6 7.5 102 183-311 49-162 (221)
247 TIGR01394 TypA_BipA GTP-bindin 98.9 1.1E-08 2.3E-13 103.1 11.2 174 102-313 2-192 (594)
248 cd04130 Wrch_1 Wrch-1 subfamil 98.9 1.5E-09 3.2E-14 92.4 4.3 117 184-308 48-170 (173)
249 cd04167 Snu114p Snu114p subfam 98.9 4.5E-09 9.7E-14 92.8 7.2 65 183-253 70-136 (213)
250 cd01892 Miro2 Miro2 subfamily. 98.9 3.4E-09 7.3E-14 90.0 6.2 155 100-311 3-165 (169)
251 PRK10512 selenocysteinyl-tRNA- 98.9 1.6E-08 3.6E-13 102.2 12.0 159 103-312 2-166 (614)
252 PLN03127 Elongation factor Tu; 98.9 2.7E-08 5.9E-13 97.1 13.1 127 100-254 60-191 (447)
253 cd04175 Rap1 Rap1 subgroup. T 98.9 3.4E-09 7.4E-14 89.1 6.0 104 183-311 48-162 (164)
254 COG0523 Putative GTPases (G3E 98.9 2.5E-08 5.5E-13 92.8 12.1 149 102-256 2-161 (323)
255 cd04132 Rho4_like Rho4-like su 98.9 1.3E-08 2.9E-13 87.5 9.6 106 183-312 48-167 (187)
256 cd04118 Rab24 Rab24 subfamily. 98.9 9.9E-09 2.1E-13 88.8 8.8 103 184-311 50-165 (193)
257 PRK05433 GTP-binding protein L 98.9 2.1E-08 4.4E-13 101.4 12.2 109 183-313 73-185 (600)
258 cd04106 Rab23_lke Rab23-like s 98.9 4.5E-09 9.7E-14 88.0 6.3 102 183-309 50-160 (162)
259 COG1341 Predicted GTPase or GT 98.9 2.6E-08 5.6E-13 93.4 11.8 120 99-224 71-211 (398)
260 TIGR00993 3a0901s04IAP86 chlor 98.9 2E-08 4.4E-13 99.6 11.6 118 102-254 119-250 (763)
261 cd04144 Ras2 Ras2 subfamily. 98.9 5.2E-09 1.1E-13 90.6 6.7 103 184-311 47-162 (190)
262 cd04122 Rab14 Rab14 subfamily. 98.8 2.8E-09 6E-14 90.0 4.6 103 183-310 50-162 (166)
263 cd04125 RabA_like RabA-like su 98.8 4.3E-09 9.3E-14 90.8 5.9 150 103-311 2-161 (188)
264 TIGR02034 CysN sulfate adenyly 98.8 4.6E-09 9.9E-14 101.6 6.7 66 183-254 79-147 (406)
265 cd04111 Rab39 Rab39 subfamily. 98.8 5.6E-09 1.2E-13 92.1 6.7 150 102-311 3-165 (211)
266 cd04176 Rap2 Rap2 subgroup. T 98.8 6.6E-09 1.4E-13 87.2 6.7 103 184-311 49-162 (163)
267 PRK05506 bifunctional sulfate 98.8 3.8E-09 8.3E-14 107.8 6.2 67 182-254 102-171 (632)
268 PTZ00369 Ras-like protein; Pro 98.8 5.6E-08 1.2E-12 84.0 12.5 103 184-311 53-166 (189)
269 cd00882 Ras_like_GTPase Ras-li 98.8 1.2E-08 2.6E-13 83.0 7.7 105 183-308 44-156 (157)
270 KOG3022 Predicted ATPase, nucl 98.8 2.6E-08 5.6E-13 88.6 10.1 42 102-143 49-90 (300)
271 cd04146 RERG_RasL11_like RERG/ 98.8 6.4E-09 1.4E-13 87.6 6.0 103 184-310 47-162 (165)
272 COG0536 Obg Predicted GTPase [ 98.8 1.1E-08 2.3E-13 93.7 7.4 158 104-314 162-335 (369)
273 cd04134 Rho3 Rho3 subfamily. 98.8 4E-09 8.6E-14 91.3 4.5 120 183-311 47-173 (189)
274 KOG0410 Predicted GTP binding 98.8 1.9E-07 4.1E-12 84.8 15.2 152 100-312 177-341 (410)
275 PRK05124 cysN sulfate adenylyl 98.8 4.4E-08 9.5E-13 96.5 12.1 65 182-254 105-174 (474)
276 COG1149 MinD superfamily P-loo 98.8 1.5E-07 3.3E-12 83.8 13.8 78 184-272 164-244 (284)
277 cd04177 RSR1 RSR1 subgroup. R 98.8 8.8E-08 1.9E-12 80.9 12.1 104 183-310 48-162 (168)
278 PF00350 Dynamin_N: Dynamin fa 98.8 1.3E-08 2.8E-13 86.0 6.7 66 183-250 100-168 (168)
279 cd01983 Fer4_NifH The Fer4_Nif 98.8 7.5E-08 1.6E-12 73.0 10.4 71 103-226 1-71 (99)
280 PRK10218 GTP-binding protein; 98.8 6.2E-08 1.3E-12 97.6 12.3 175 101-313 5-196 (607)
281 cd04162 Arl9_Arfrp2_like Arl9/ 98.8 7.6E-08 1.6E-12 81.3 11.0 107 104-254 2-113 (164)
282 PRK04000 translation initiatio 98.8 4.8E-08 1E-12 94.6 11.0 112 184-313 85-202 (411)
283 TIGR00484 EF-G translation elo 98.8 6E-08 1.3E-12 100.0 12.3 130 100-254 9-141 (689)
284 PF02374 ArsA_ATPase: Anion-tr 98.8 1E-08 2.2E-13 95.3 6.0 38 102-139 2-39 (305)
285 PRK00741 prfC peptide chain re 98.8 3.9E-07 8.4E-12 90.7 17.5 149 100-271 9-164 (526)
286 cd04126 Rab20 Rab20 subfamily. 98.8 2E-08 4.4E-13 89.0 7.5 107 103-254 2-114 (220)
287 TIGR03680 eif2g_arch translati 98.8 3.1E-08 6.8E-13 95.9 9.3 112 183-312 79-196 (406)
288 cd04115 Rab33B_Rab33A Rab33B/R 98.8 1.5E-07 3.3E-12 79.7 12.5 67 183-254 50-123 (170)
289 KOG1533 Predicted GTPase [Gene 98.8 1.4E-08 2.9E-13 88.2 5.9 37 104-140 5-41 (290)
290 PF00142 Fer4_NifH: 4Fe-4S iro 98.7 1.4E-07 3E-12 84.2 12.2 166 102-273 1-208 (273)
291 PRK00007 elongation factor G; 98.7 6.7E-08 1.5E-12 99.6 11.8 130 100-254 9-141 (693)
292 cd04141 Rit_Rin_Ric Rit/Rin/Ri 98.7 1.6E-08 3.5E-13 86.1 6.1 103 183-310 49-162 (172)
293 TIGR02475 CobW cobalamin biosy 98.7 3.5E-07 7.7E-12 86.3 15.7 121 101-225 4-135 (341)
294 PF00025 Arf: ADP-ribosylation 98.7 2.4E-08 5.2E-13 85.4 7.1 151 100-310 13-174 (175)
295 PTZ00141 elongation factor 1- 98.7 2E-08 4.4E-13 98.1 7.4 65 182-252 83-157 (446)
296 cd01871 Rac1_like Rac1-like su 98.7 8.5E-09 1.8E-13 88.0 4.1 117 183-309 48-172 (174)
297 cd01885 EF2 EF2 (for archaea a 98.7 6E-08 1.3E-12 86.0 9.5 65 183-253 72-138 (222)
298 cd04116 Rab9 Rab9 subfamily. 98.7 2.1E-08 4.5E-13 84.8 6.2 104 183-310 53-169 (170)
299 cd04108 Rab36_Rab34 Rab34/Rab3 98.7 4E-08 8.6E-13 83.5 7.8 104 183-311 48-164 (170)
300 COG1348 NifH Nitrogenase subun 98.7 2.5E-06 5.5E-11 74.2 18.8 167 102-273 2-209 (278)
301 cd01882 BMS1 Bms1. Bms1 is an 98.7 1.7E-07 3.7E-12 83.4 12.1 109 98-254 36-147 (225)
302 PLN03071 GTP-binding nuclear p 98.7 7E-08 1.5E-12 85.6 9.5 153 100-311 12-171 (219)
303 PRK12739 elongation factor G; 98.7 9.8E-08 2.1E-12 98.4 11.8 129 100-254 7-139 (691)
304 cd04120 Rab12 Rab12 subfamily. 98.7 1.8E-08 3.8E-13 88.2 5.4 105 183-311 48-162 (202)
305 PF13614 AAA_31: AAA domain; P 98.7 1.3E-07 2.9E-12 78.9 10.5 115 102-224 1-151 (157)
306 cd04128 Spg1 Spg1p. Spg1p (se 98.7 4.4E-08 9.5E-13 84.3 7.7 107 183-311 48-165 (182)
307 cd04143 Rhes_like Rhes_like su 98.7 2.3E-08 5E-13 90.3 6.2 109 183-311 47-170 (247)
308 cd04117 Rab15 Rab15 subfamily. 98.7 3.2E-08 6.9E-13 83.2 6.6 102 184-310 49-160 (161)
309 cd01874 Cdc42 Cdc42 subfamily. 98.7 1.3E-08 2.7E-13 87.0 4.2 118 183-309 48-172 (175)
310 cd01850 CDC_Septin CDC/Septin. 98.7 2.1E-07 4.5E-12 85.4 11.9 149 101-274 4-183 (276)
311 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.7 3.7E-08 8E-13 87.4 6.5 120 183-310 48-174 (222)
312 TIGR00483 EF-1_alpha translati 98.7 2.4E-08 5.1E-13 97.4 5.7 66 183-254 84-155 (426)
313 PLN03110 Rab GTPase; Provision 98.7 4.3E-08 9.3E-13 86.7 6.7 148 102-311 13-173 (216)
314 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.7 4.8E-08 1E-12 84.1 6.7 120 183-309 52-177 (182)
315 cd01899 Ygr210 Ygr210 subfamil 98.7 1.5E-07 3.2E-12 87.9 10.4 29 285-314 242-271 (318)
316 PLN03108 Rab family protein; P 98.7 1E-07 2.3E-12 83.9 8.9 150 102-310 7-166 (210)
317 PLN03126 Elongation factor Tu; 98.7 4E-07 8.7E-12 89.5 13.8 127 100-254 80-211 (478)
318 KOG1145 Mitochondrial translat 98.7 1.1E-06 2.4E-11 84.8 16.1 162 98-310 150-314 (683)
319 cd04105 SR_beta Signal recogni 98.6 1.7E-07 3.8E-12 82.0 9.9 66 183-254 47-123 (203)
320 KOG2743 Cobalamin synthesis pr 98.6 2.8E-07 6.1E-12 82.8 11.1 149 100-255 56-226 (391)
321 cd01875 RhoG RhoG subfamily. 98.6 4.6E-08 9.9E-13 84.8 6.1 121 183-311 50-176 (191)
322 TIGR00503 prfC peptide chain r 98.6 1.7E-07 3.6E-12 93.3 10.9 141 100-263 10-156 (527)
323 PF04548 AIG1: AIG1 family; I 98.6 5.7E-08 1.2E-12 85.7 6.8 119 103-255 2-131 (212)
324 COG3596 Predicted GTPase [Gene 98.6 1.9E-07 4.2E-12 83.3 10.0 172 100-315 38-225 (296)
325 cd04121 Rab40 Rab40 subfamily. 98.6 1.9E-07 4.2E-12 80.8 9.9 104 183-311 54-166 (189)
326 PRK12740 elongation factor G; 98.6 2.5E-07 5.5E-12 95.2 12.1 83 182-270 58-144 (668)
327 cd04131 Rnd Rnd subfamily. Th 98.6 4.3E-08 9.2E-13 84.1 5.4 120 183-309 48-173 (178)
328 cd01858 NGP_1 NGP-1. Autoanti 98.6 5.7E-08 1.2E-12 81.5 5.9 31 101-137 102-132 (157)
329 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.6 4.9E-08 1.1E-12 87.1 5.7 121 183-311 60-187 (232)
330 cd04129 Rho2 Rho2 subfamily. 98.6 1.5E-07 3.2E-12 81.3 7.3 104 184-311 49-172 (187)
331 PF09439 SRPRB: Signal recogni 98.6 2.7E-07 5.9E-12 78.7 8.5 114 102-255 4-127 (181)
332 KOG0462 Elongation factor-type 98.6 9.8E-08 2.1E-12 92.0 6.1 174 100-313 59-236 (650)
333 COG0532 InfB Translation initi 98.5 5.3E-07 1.2E-11 87.2 11.0 163 99-310 3-168 (509)
334 cd01900 YchF YchF subfamily. 98.5 1.6E-07 3.5E-12 85.6 7.0 101 104-224 1-103 (274)
335 COG4917 EutP Ethanolamine util 98.5 9.7E-08 2.1E-12 74.9 4.5 139 102-310 2-144 (148)
336 TIGR00347 bioD dethiobiotin sy 98.5 1.2E-06 2.7E-11 74.0 11.8 26 110-135 7-32 (166)
337 PTZ00258 GTP-binding protein; 98.5 2.9E-07 6.2E-12 87.8 8.6 104 101-224 21-126 (390)
338 PLN00043 elongation factor 1-a 98.5 1E-06 2.2E-11 86.2 12.1 66 182-253 83-158 (447)
339 PRK01077 cobyrinic acid a,c-di 98.5 4.4E-06 9.5E-11 82.0 16.3 163 102-273 4-177 (451)
340 TIGR02836 spore_IV_A stage IV 98.5 2.4E-06 5.2E-11 80.9 13.6 165 100-276 16-218 (492)
341 PRK14493 putative bifunctional 98.5 2.3E-07 5E-12 84.7 6.3 89 102-196 2-100 (274)
342 TIGR00490 aEF-2 translation el 98.5 1.7E-06 3.7E-11 89.6 13.1 65 182-253 84-151 (720)
343 KOG1534 Putative transcription 98.5 7.3E-07 1.6E-11 76.4 8.4 37 103-139 5-41 (273)
344 COG1217 TypA Predicted membran 98.4 2.9E-06 6.2E-11 80.6 12.7 171 102-313 6-196 (603)
345 PRK09601 GTP-binding protein Y 98.4 6.1E-07 1.3E-11 84.6 8.3 102 102-224 3-107 (364)
346 cd04178 Nucleostemin_like Nucl 98.4 3.2E-07 6.9E-12 78.2 5.8 31 101-137 117-147 (172)
347 smart00382 AAA ATPases associa 98.4 4.4E-06 9.5E-11 67.1 12.0 91 102-198 3-93 (148)
348 PTZ00416 elongation factor 2; 98.4 6.3E-07 1.4E-11 94.1 8.6 65 183-253 91-157 (836)
349 PRK13351 elongation factor G; 98.4 1.8E-06 3.9E-11 89.2 11.8 81 183-269 72-156 (687)
350 PTZ00327 eukaryotic translatio 98.4 1.2E-06 2.6E-11 85.6 10.0 112 184-313 117-234 (460)
351 COG0481 LepA Membrane GTPase L 98.4 4.2E-07 9.1E-12 86.4 6.3 109 183-313 75-187 (603)
352 COG1618 Predicted nucleotide k 98.4 4.3E-06 9.3E-11 69.0 11.1 37 101-137 5-42 (179)
353 COG1797 CobB Cobyrinic acid a, 98.4 1.8E-05 4E-10 75.1 16.3 157 104-274 3-176 (451)
354 PRK06278 cobyrinic acid a,c-di 98.4 4.4E-05 9.4E-10 74.9 19.1 184 79-273 216-416 (476)
355 PRK07560 elongation factor EF- 98.3 2.5E-06 5.5E-11 88.6 10.8 64 183-253 86-152 (731)
356 cd04133 Rop_like Rop subfamily 98.3 3.4E-07 7.4E-12 78.4 3.6 118 183-311 48-172 (176)
357 PRK13886 conjugal transfer pro 98.3 3E-05 6.5E-10 69.2 16.0 42 102-143 3-45 (241)
358 smart00176 RAN Ran (Ras-relate 98.3 1.7E-06 3.6E-11 75.7 7.9 104 183-311 43-153 (200)
359 PF08477 Miro: Miro-like prote 98.3 8.7E-07 1.9E-11 70.2 5.6 20 103-122 1-20 (119)
360 PRK00090 bioD dithiobiotin syn 98.3 6.7E-05 1.4E-09 66.5 18.2 168 104-273 2-198 (222)
361 PTZ00132 GTP-binding nuclear p 98.3 4.1E-06 8.9E-11 73.8 10.0 65 183-254 57-127 (215)
362 PRK12337 2-phosphoglycerate ki 98.3 1.1E-06 2.3E-11 84.8 6.6 110 27-142 175-292 (475)
363 COG1100 GTPase SAR1 and relate 98.3 1.2E-06 2.6E-11 77.2 6.4 115 102-256 6-127 (219)
364 PLN00116 translation elongatio 98.3 4E-06 8.7E-11 88.2 11.3 65 183-253 97-163 (843)
365 cd01857 HSR1_MMR1 HSR1/MMR1. 98.3 1.3E-06 2.9E-11 71.8 6.1 29 103-137 85-113 (141)
366 COG2229 Predicted GTPase [Gene 98.3 2.6E-05 5.6E-10 65.6 13.6 123 102-255 11-136 (187)
367 cd01849 YlqF_related_GTPase Yl 98.3 1.2E-06 2.5E-11 73.3 5.6 23 100-122 99-121 (155)
368 cd04103 Centaurin_gamma Centau 98.3 8.7E-07 1.9E-11 74.4 4.7 100 184-309 47-156 (158)
369 PRK04220 2-phosphoglycerate ki 98.3 3.1E-06 6.7E-11 77.7 8.5 102 34-141 21-128 (301)
370 KOG1144 Translation initiation 98.3 8.5E-06 1.8E-10 81.2 11.6 178 99-311 473-686 (1064)
371 COG0529 CysC Adenylylsulfate k 98.3 4E-06 8.6E-11 70.2 8.0 45 99-143 21-65 (197)
372 cd01851 GBP Guanylate-binding 98.3 5E-06 1.1E-10 74.0 9.2 95 100-226 6-104 (224)
373 cd01873 RhoBTB RhoBTB subfamil 98.3 5.8E-06 1.3E-10 71.9 9.4 64 183-254 65-134 (195)
374 COG5256 TEF1 Translation elong 98.2 5.4E-06 1.2E-10 78.0 9.2 65 183-254 84-159 (428)
375 PRK09563 rbgA GTPase YlqF; Rev 98.2 1.8E-06 4E-11 79.7 5.9 32 100-137 120-151 (287)
376 cd01855 YqeH YqeH. YqeH is an 98.2 2.1E-06 4.6E-11 74.2 5.9 22 102-123 128-149 (190)
377 COG4108 PrfC Peptide chain rel 98.2 2.1E-05 4.6E-10 74.4 12.7 130 100-255 11-148 (528)
378 PRK04296 thymidine kinase; Pro 98.2 1.9E-05 4.1E-10 68.4 11.5 87 102-196 3-91 (190)
379 KOG2825 Putative arsenite-tran 98.2 2.1E-06 4.6E-11 75.4 5.5 38 102-139 20-57 (323)
380 KOG1490 GTP-binding protein CR 98.2 5E-05 1.1E-09 73.0 15.0 141 100-276 167-324 (620)
381 COG1161 Predicted GTPases [Gen 98.2 2.7E-06 5.9E-11 79.7 6.2 31 101-137 132-162 (322)
382 TIGR03596 GTPase_YlqF ribosome 98.2 3.2E-06 7E-11 77.6 6.4 31 101-137 118-148 (276)
383 cd01120 RecA-like_NTPases RecA 98.2 1.6E-05 3.6E-10 66.0 10.3 40 103-142 1-40 (165)
384 PF03193 DUF258: Protein of un 98.2 1.5E-06 3.2E-11 72.7 3.8 21 102-122 36-56 (161)
385 PF05049 IIGP: Interferon-indu 98.2 2E-05 4.3E-10 74.6 11.7 118 102-252 36-153 (376)
386 PF00071 Ras: Ras family; Int 98.2 1.2E-05 2.6E-10 67.1 9.2 66 183-254 47-118 (162)
387 COG2805 PilT Tfp pilus assembl 98.2 6.6E-06 1.4E-10 74.5 7.7 81 100-189 124-204 (353)
388 PF13500 AAA_26: AAA domain; P 98.1 6.5E-05 1.4E-09 65.4 13.5 165 103-272 2-187 (199)
389 COG0050 TufB GTPases - transla 98.1 3.4E-05 7.3E-10 69.6 11.4 126 102-255 13-143 (394)
390 COG0480 FusA Translation elong 98.1 2.2E-05 4.8E-10 80.2 11.6 142 100-271 9-161 (697)
391 PRK12289 GTPase RsgA; Reviewed 98.1 3E-06 6.6E-11 80.1 5.0 21 102-122 173-193 (352)
392 TIGR02237 recomb_radB DNA repa 98.1 2E-05 4.3E-10 69.2 9.7 39 101-139 12-50 (209)
393 PRK06526 transposase; Provisio 98.1 5.5E-06 1.2E-10 75.0 5.5 36 102-137 99-134 (254)
394 cd04102 RabL3 RabL3 (Rab-like3 98.1 8.3E-05 1.8E-09 65.0 12.7 20 103-122 2-21 (202)
395 cd03109 DTBS Dethiobiotin synt 98.1 0.00028 6.2E-09 57.4 15.0 121 105-272 4-131 (134)
396 PRK12288 GTPase RsgA; Reviewed 98.0 5E-06 1.1E-10 78.6 5.0 21 102-122 206-226 (347)
397 PRK09361 radB DNA repair and r 98.0 2.9E-05 6.2E-10 69.0 9.6 39 101-139 23-61 (225)
398 PRK09602 translation-associate 98.0 1.5E-05 3.2E-10 76.8 8.1 21 102-122 2-22 (396)
399 PF03205 MobB: Molybdopterin g 98.0 7.6E-06 1.6E-10 67.3 5.2 38 102-139 1-39 (140)
400 cd01124 KaiC KaiC is a circadi 98.0 6.9E-05 1.5E-09 64.3 11.0 36 104-139 2-37 (187)
401 PF13604 AAA_30: AAA domain; P 98.0 2.4E-05 5.3E-10 68.1 8.1 107 102-225 19-132 (196)
402 KOG0094 GTPase Rab6/YPT6/Ryh1, 98.0 4.4E-05 9.5E-10 64.8 9.1 155 102-314 23-187 (221)
403 PLN00023 GTP-binding protein; 98.0 0.00021 4.6E-09 66.4 14.6 21 102-122 22-42 (334)
404 PRK14494 putative molybdopteri 98.0 1.1E-05 2.3E-10 71.7 5.7 35 102-136 2-36 (229)
405 PRK00889 adenylylsulfate kinas 98.0 1E-05 2.2E-10 69.0 5.4 42 100-141 3-44 (175)
406 cd01394 radB RadB. The archaea 98.0 4.5E-05 9.7E-10 67.4 9.7 39 101-139 19-57 (218)
407 KOG2485 Conserved ATP/GTP bind 98.0 3.1E-05 6.8E-10 70.4 8.5 68 101-198 143-210 (335)
408 TIGR00176 mobB molybdopterin-g 98.0 9E-06 2E-10 68.0 4.7 37 103-139 1-37 (155)
409 COG5019 CDC3 Septin family pro 98.0 9.1E-05 2E-09 69.0 11.6 147 98-272 20-200 (373)
410 PF13245 AAA_19: Part of AAA d 98.0 1.9E-05 4.2E-10 57.7 5.8 45 102-149 11-59 (76)
411 PF13401 AAA_22: AAA domain; P 98.0 3.3E-05 7.2E-10 62.1 7.7 38 101-138 4-46 (131)
412 PRK07667 uridine kinase; Provi 98.0 1.5E-05 3.3E-10 69.2 6.0 42 100-141 16-57 (193)
413 KOG0092 GTPase Rab5/YPT51 and 98.0 2.7E-05 6E-10 65.9 7.2 107 184-315 54-170 (200)
414 PRK06067 flagellar accessory p 97.9 0.0002 4.4E-09 64.0 13.4 39 101-139 25-63 (234)
415 cd01856 YlqF YlqF. Proteins o 97.9 2.2E-05 4.8E-10 66.7 6.5 29 101-135 115-143 (171)
416 PRK06696 uridine kinase; Valid 97.9 1.5E-05 3.3E-10 70.8 5.7 44 100-143 21-64 (223)
417 PRK05541 adenylylsulfate kinas 97.9 0.00011 2.3E-09 62.7 10.7 41 100-140 6-46 (176)
418 PF01583 APS_kinase: Adenylyls 97.9 1.1E-05 2.5E-10 67.1 4.4 42 101-142 2-43 (156)
419 COG2019 AdkA Archaeal adenylat 97.9 1.5E-05 3.2E-10 66.2 4.9 25 101-125 4-28 (189)
420 PF13671 AAA_33: AAA domain; P 97.9 1.4E-05 3.1E-10 65.4 4.9 33 103-140 1-33 (143)
421 TIGR00379 cobB cobyrinic acid 97.9 0.00053 1.1E-08 67.4 16.7 159 104-273 2-174 (449)
422 TIGR03878 thermo_KaiC_2 KaiC d 97.9 9E-05 2E-09 67.4 10.5 38 101-138 36-73 (259)
423 TIGR00157 ribosome small subun 97.9 1.7E-05 3.7E-10 71.5 5.7 21 102-122 121-141 (245)
424 cd02027 APSK Adenosine 5'-phos 97.9 6.8E-05 1.5E-09 62.3 8.9 40 103-142 1-40 (149)
425 PHA00729 NTP-binding motif con 97.9 5E-05 1.1E-09 67.0 8.4 25 102-126 18-42 (226)
426 COG1162 Predicted GTPases [Gen 97.9 1.1E-05 2.5E-10 73.5 4.4 23 101-123 164-186 (301)
427 TIGR02012 tigrfam_recA protein 97.9 0.00015 3.2E-09 67.6 11.9 38 101-138 55-92 (321)
428 KOG1486 GTP-binding protein DR 97.9 3.7E-05 7.9E-10 67.8 7.3 93 99-227 60-153 (364)
429 PF00735 Septin: Septin; Inte 97.9 2E-05 4.3E-10 72.4 5.9 21 102-122 5-25 (281)
430 PRK14845 translation initiatio 97.9 3E-05 6.5E-10 82.3 7.9 117 184-310 526-671 (1049)
431 TIGR03574 selen_PSTK L-seryl-t 97.9 4.6E-05 1E-09 68.8 8.2 38 104-141 2-39 (249)
432 cd01131 PilT Pilus retraction 97.9 5.3E-05 1.2E-09 66.0 8.1 34 102-135 2-36 (198)
433 PRK15453 phosphoribulokinase; 97.9 6.8E-05 1.5E-09 68.2 8.9 43 100-142 4-46 (290)
434 PRK08533 flagellar accessory p 97.9 0.0001 2.2E-09 65.9 9.9 47 102-148 25-71 (230)
435 PRK05480 uridine/cytidine kina 97.9 2.4E-05 5.2E-10 68.7 5.6 40 100-141 5-44 (209)
436 PRK05973 replicative DNA helic 97.9 0.00029 6.3E-09 62.9 12.5 39 101-139 64-102 (237)
437 PRK08233 hypothetical protein; 97.9 4.3E-05 9.2E-10 65.3 7.0 25 101-125 3-27 (182)
438 TIGR00313 cobQ cobyric acid sy 97.9 0.00064 1.4E-08 67.2 16.1 34 104-137 1-35 (475)
439 COG1763 MobB Molybdopterin-gua 97.9 1.8E-05 3.9E-10 66.2 4.5 37 101-137 2-38 (161)
440 PF02881 SRP54_N: SRP54-type p 97.8 0.00026 5.6E-09 51.5 10.0 74 6-83 1-75 (75)
441 PRK10751 molybdopterin-guanine 97.8 2.4E-05 5.3E-10 66.4 5.2 38 100-137 5-42 (173)
442 cd03116 MobB Molybdenum is an 97.8 2.8E-05 6.1E-10 65.2 5.5 38 102-139 2-39 (159)
443 PRK05439 pantothenate kinase; 97.8 2.9E-05 6.2E-10 72.0 5.9 43 99-141 84-128 (311)
444 cd02028 UMPK_like Uridine mono 97.8 1.9E-05 4.1E-10 67.7 4.5 39 103-141 1-39 (179)
445 cd02029 PRK_like Phosphoribulo 97.8 6.4E-05 1.4E-09 67.8 7.9 40 103-142 1-40 (277)
446 cd01122 GP4d_helicase GP4d_hel 97.8 0.00031 6.8E-09 64.1 12.8 39 101-139 30-69 (271)
447 PRK06762 hypothetical protein; 97.8 0.00019 4.2E-09 60.4 10.3 38 101-141 2-39 (166)
448 cd01859 MJ1464 MJ1464. This f 97.8 6.4E-05 1.4E-09 62.7 7.3 38 77-122 85-122 (156)
449 PRK07952 DNA replication prote 97.8 7.4E-05 1.6E-09 67.1 8.1 35 103-137 101-135 (244)
450 PF13207 AAA_17: AAA domain; P 97.8 2.3E-05 4.9E-10 62.3 4.3 32 103-139 1-32 (121)
451 PRK13796 GTPase YqeH; Provisio 97.8 2.6E-05 5.6E-10 74.5 5.2 22 102-123 161-182 (365)
452 PRK05632 phosphate acetyltrans 97.8 0.00095 2.1E-08 69.0 17.0 141 103-253 4-155 (684)
453 KOG0461 Selenocysteine-specifi 97.8 6.1E-05 1.3E-09 69.3 7.2 171 102-311 8-192 (522)
454 PF06414 Zeta_toxin: Zeta toxi 97.8 0.00011 2.3E-09 64.1 8.7 92 98-196 12-105 (199)
455 cd00983 recA RecA is a bacter 97.8 0.0003 6.5E-09 65.7 12.0 38 101-138 55-92 (325)
456 COG5192 BMS1 GTP-binding prote 97.8 0.00032 7E-09 68.3 12.3 128 99-274 67-207 (1077)
457 cd02025 PanK Pantothenate kina 97.8 2.8E-05 6E-10 69.0 4.8 39 103-141 1-41 (220)
458 PRK12374 putative dithiobiotin 97.8 0.0014 3.1E-08 58.5 15.7 166 103-273 4-199 (231)
459 KOG0084 GTPase Rab1/YPT1, smal 97.8 0.00025 5.3E-09 60.4 10.0 126 102-269 10-147 (205)
460 PRK14489 putative bifunctional 97.8 6.1E-05 1.3E-09 72.0 7.2 40 100-139 204-243 (366)
461 PRK00098 GTPase RsgA; Reviewed 97.8 2.8E-05 6.1E-10 72.2 4.8 22 101-122 164-185 (298)
462 KOG0635 Adenosine 5'-phosphosu 97.8 0.00014 3E-09 59.3 8.0 45 99-143 29-73 (207)
463 cd02019 NK Nucleoside/nucleoti 97.8 3.9E-05 8.5E-10 54.9 4.4 33 103-137 1-33 (69)
464 PRK04040 adenylate kinase; Pro 97.8 4.1E-05 8.8E-10 66.2 5.2 26 101-126 2-27 (188)
465 COG5257 GCD11 Translation init 97.8 6E-05 1.3E-09 68.8 6.4 179 101-313 10-203 (415)
466 TIGR03597 GTPase_YqeH ribosome 97.8 3.6E-05 7.8E-10 73.4 5.3 22 102-123 155-176 (360)
467 PRK06893 DNA replication initi 97.7 0.00017 3.6E-09 64.4 9.2 36 102-137 40-75 (229)
468 PRK09270 nucleoside triphospha 97.7 0.00011 2.4E-09 65.6 8.0 43 99-141 31-74 (229)
469 TIGR03877 thermo_KaiC_1 KaiC d 97.7 0.00028 6.1E-09 63.2 10.6 39 101-139 21-59 (237)
470 PRK06835 DNA replication prote 97.7 0.00022 4.7E-09 67.0 9.8 96 34-137 122-219 (329)
471 PF00004 AAA: ATPase family as 97.7 0.0001 2.3E-09 59.1 6.8 68 104-194 1-69 (132)
472 COG0466 Lon ATP-dependent Lon 97.7 0.00089 1.9E-08 67.4 14.4 99 32-134 252-383 (782)
473 PF08433 KTI12: Chromatin asso 97.7 0.00025 5.5E-09 64.7 9.9 37 103-139 3-39 (270)
474 cd02023 UMPK Uridine monophosp 97.7 4E-05 8.6E-10 66.7 4.5 37 103-141 1-37 (198)
475 TIGR00554 panK_bact pantothena 97.7 5.7E-05 1.2E-09 69.5 5.6 44 99-142 60-105 (290)
476 PHA02542 41 41 helicase; Provi 97.7 0.00066 1.4E-08 66.9 13.3 39 101-139 190-228 (473)
477 PF06745 KaiC: KaiC; InterPro 97.7 0.00022 4.7E-09 63.4 9.2 39 101-139 19-58 (226)
478 PF01695 IstB_IS21: IstB-like 97.7 0.00022 4.8E-09 61.0 8.8 76 102-198 48-123 (178)
479 cd01393 recA_like RecA is a b 97.7 0.0002 4.3E-09 63.5 8.8 38 101-138 19-62 (226)
480 COG4963 CpaE Flp pilus assembl 97.7 0.0015 3.2E-08 61.4 14.8 147 100-256 103-287 (366)
481 KOG2004 Mitochondrial ATP-depe 97.7 0.00077 1.7E-08 67.7 13.5 35 100-134 437-471 (906)
482 PLN02796 D-glycerate 3-kinase 97.7 0.00032 7E-09 65.7 10.4 42 100-141 99-140 (347)
483 COG0012 Predicted GTPase, prob 97.7 4.7E-05 1E-09 71.2 4.8 98 102-225 3-109 (372)
484 PF00485 PRK: Phosphoribulokin 97.7 5.4E-05 1.2E-09 65.7 4.8 39 103-141 1-43 (194)
485 KOG1424 Predicted GTP-binding 97.7 4.9E-05 1.1E-09 73.3 4.7 31 101-137 314-344 (562)
486 KOG0079 GTP-binding protein H- 97.7 0.00028 6E-09 57.3 8.2 110 104-255 11-127 (198)
487 TIGR01420 pilT_fam pilus retra 97.6 0.0005 1.1E-08 65.2 11.3 109 101-226 122-232 (343)
488 cd01121 Sms Sms (bacterial rad 97.6 0.00045 9.7E-09 66.0 11.0 85 101-193 82-168 (372)
489 cd00984 DnaB_C DnaB helicase C 97.6 0.0012 2.7E-08 59.0 13.4 39 101-139 13-52 (242)
490 COG2403 Predicted GTPase [Gene 97.6 0.00042 9.1E-09 64.5 10.2 136 102-256 127-284 (449)
491 TIGR02655 circ_KaiC circadian 97.6 0.00034 7.3E-09 69.4 10.5 39 101-139 263-301 (484)
492 cd00009 AAA The AAA+ (ATPases 97.6 0.00025 5.4E-09 57.2 8.0 38 102-139 20-57 (151)
493 PF13481 AAA_25: AAA domain; P 97.6 0.00023 5.1E-09 61.3 8.3 40 102-141 33-82 (193)
494 cd02021 GntK Gluconate kinase 97.6 0.00065 1.4E-08 56.1 10.4 36 103-143 1-36 (150)
495 PRK00784 cobyric acid synthase 97.6 0.0031 6.7E-08 62.7 17.0 35 102-136 3-38 (488)
496 KOG2655 Septin family protein 97.6 0.00032 7E-09 65.7 9.1 26 98-123 18-43 (366)
497 PTZ00301 uridine kinase; Provi 97.6 0.00011 2.3E-09 64.6 5.7 41 101-141 3-45 (210)
498 PRK03846 adenylylsulfate kinas 97.6 9.2E-05 2E-09 64.5 5.2 42 100-141 23-64 (198)
499 PHA02530 pseT polynucleotide k 97.6 0.00032 6.9E-09 65.0 9.1 36 102-141 3-38 (300)
500 KOG0076 GTP-binding ADP-ribosy 97.6 0.0004 8.6E-09 58.0 8.5 160 102-314 18-189 (197)
No 1
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=100.00 E-value=3e-59 Score=433.19 Aligned_cols=340 Identities=41% Similarity=0.653 Sum_probs=327.1
Q ss_pred chHhHHHHHHHHHHHhhcccccChhhhHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcccccccCCChHHHHHHHHHH
Q 019214 2 VLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFN 81 (344)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 81 (344)
.|+.|..+|++.++++++++.++|+.+++.+++++.+|+++||+..++.+|..++.+....+.++++.+|.+++...|.+
T Consensus 1 m~e~L~~~l~~~l~kl~g~~~i~E~~i~e~~reir~ALLeADVnl~vVk~fi~~ikera~g~ev~~~l~p~q~~iKiV~e 80 (451)
T COG0541 1 MFESLSDRLSNALKKLRGKGRITEKDVKEALREIRRALLEADVNLKVVKDFIKRIKERALGEEVPKGLTPGQQFIKIVYE 80 (451)
T ss_pred ChHHHHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceec
Q 019214 82 ELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYG 161 (344)
Q Consensus 82 ~l~~~l~~~~~~~~~~~~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~ 161 (344)
+|..++.....+......+|.+|.++|--|+||||++.+||.+|.++|++|++|++|+||++|++||+..+...++|+|.
T Consensus 81 ELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~ 160 (451)
T COG0541 81 ELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFG 160 (451)
T ss_pred HHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceec
Confidence 99999997555555556678999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHHHHHHHhccCC
Q 019214 162 SYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVS 241 (344)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~~~~~~~~~~~ 241 (344)
.....+|++++..++++++...+|++||||+|+++.+..++.+++.+.....||.+++|+|+..|+++...+..|++.++
T Consensus 161 ~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~ 240 (451)
T COG0541 161 SGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALG 240 (451)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcC
Confidence 87788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCEEEeecCCCCCChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCCCchHHHHH
Q 019214 242 VGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELLQ 321 (344)
Q Consensus 242 ~~~lVinK~D~~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~~~~~~~~~ 321 (344)
+.++|+||+|...++|..++..+.++.||.|+++|+.++++.+|+|..++|+++|.||+.+|+|++++.++.+..++..+
T Consensus 241 itGvIlTKlDGdaRGGaALS~~~~tg~PIkFiGtGEki~dLE~F~P~R~asRILGMGDv~sLvEk~~~~~d~e~a~~~~~ 320 (451)
T COG0541 241 ITGVILTKLDGDARGGAALSARAITGKPIKFIGTGEKIDDLEPFHPDRFASRILGMGDVLSLIEKAEEVVDEEEAEKLAE 320 (451)
T ss_pred CceEEEEcccCCCcchHHHhhHHHHCCCeEEEecCCCcccCCCcChHHHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred HHhcCCcChHHHHHhHHhhcc
Q 019214 322 KLSEGNFTLRIMFSLCFQDSV 342 (344)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~ 342 (344)
++.+|+|||+||++| ++++-
T Consensus 321 kl~~g~FtL~Df~~Q-l~~m~ 340 (451)
T COG0541 321 KLKKGKFTLEDFLEQ-LEQMK 340 (451)
T ss_pred HHHhCCCCHHHHHHH-HHHHH
Confidence 999999999999999 88763
No 2
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-56 Score=406.40 Aligned_cols=340 Identities=71% Similarity=1.078 Sum_probs=330.2
Q ss_pred CchHhHHHHHHHHHHHhhcccccChhhhHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcccccccCCChHHHHHHHHH
Q 019214 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIF 80 (344)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (344)
|.++.|..++++++.+++..+..+++.++.++++|.++|+++||++.+..++.+++.+.+....+.++.++.+.+..++.
T Consensus 1 mvla~lGrrI~~a~~~~s~~t~~~~~~l~~~L~eI~~ALLesDV~~~lV~~l~~nir~~i~~~~~~~G~nk~r~i~~~vf 80 (483)
T KOG0780|consen 1 MVLAELGRRITSAFSRMSNATSIDETALNTMLKEICRALLESDVNPRLVKELRENIRKIINLEKLASGVNKRRIIQKAVF 80 (483)
T ss_pred CchHHhchhHHHHHHHhccCCcchHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhchhhhccccCHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCccee
Q 019214 81 NELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFY 160 (344)
Q Consensus 81 ~~l~~~l~~~~~~~~~~~~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~ 160 (344)
++|..++++...++.+..+++.+|.|||-.|+||||++.+||.++.++|+++++|..|+||+++.+||+.++++.++|+|
T Consensus 81 ~eL~kl~dp~~~~~~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~y 160 (483)
T KOG0780|consen 81 DELVKLLDPGKSALQPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFY 160 (483)
T ss_pred HHHHHHhCCCCcccccccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeE
Confidence 99999999998888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHHHHHHHhccC
Q 019214 161 GSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV 240 (344)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~~~~~~~~~~ 240 (344)
..++..+|+.++.+++.++++++||+||+||.|++.....++++|..+..+..||.+++|+|++.|+....++..|+...
T Consensus 161 gsyte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~v 240 (483)
T KOG0780|consen 161 GSYTEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETV 240 (483)
T ss_pred ecccccchHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CcCEEEeecCCCCCChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCCCchHHHH
Q 019214 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELL 320 (344)
Q Consensus 241 ~~~~lVinK~D~~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~~~~~~~~ 320 (344)
.+.++|+||+|...++|..++..+.++.||.|+++|+.++|+++|+|..|+|.++|.||++.|++++++.. .+..+++.
T Consensus 241 dvg~vIlTKlDGhakGGgAlSaVaaTksPIiFIGtGEhmdDlE~F~pk~FvsrlLGmGDi~glvek~~ev~-~~d~~el~ 319 (483)
T KOG0780|consen 241 DVGAVILTKLDGHAKGGGALSAVAATKSPIIFIGTGEHMDDLEPFDPKPFVSRLLGMGDIEGLVEKVQEVG-KDDAKELV 319 (483)
T ss_pred ccceEEEEecccCCCCCceeeehhhhCCCEEEEecCccccccCCCChHHHHHHHhccccHHHHHHHHHHHh-hhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988 67789999
Q ss_pred HHHhcCCcChHHHHHhHHhhcc
Q 019214 321 QKLSEGNFTLRIMFSLCFQDSV 342 (344)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~ 342 (344)
+++..|+|||+|+++| ++.|.
T Consensus 320 ~kl~~gkFtlrd~y~Q-fq~im 340 (483)
T KOG0780|consen 320 EKLKQGKFTLRDFYDQ-FQNIM 340 (483)
T ss_pred HHHHhCCccHHHHHHH-HHHHH
Confidence 9999999999999999 98875
No 3
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=100.00 E-value=5.3e-56 Score=421.53 Aligned_cols=340 Identities=69% Similarity=1.087 Sum_probs=319.5
Q ss_pred chHhHHHHHHHHHHHhhcccccChhhhHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcccccccCCChHHHHHHHHHH
Q 019214 2 VLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFN 81 (344)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 81 (344)
+|+.|+++|++.++++++++.++|+.+.+.+++|+..|+++||+.+++.++++++.+....+.+..+.+|.+.+...+.+
T Consensus 1 ~l~~L~~~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLleaDV~~~vv~~~~~~v~~~~~~~~~~~~~~~~~~v~~~v~~ 80 (429)
T TIGR01425 1 VLADLGSSITSALRSMSNATVIDEEVLNAMLKEICTALLESDVNIKLVRQLRENIKKAINLEEMASGLNKRKMIQHAVFK 80 (429)
T ss_pred ChhHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999998888888888999999999999
Q ss_pred HHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceec
Q 019214 82 ELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYG 161 (344)
Q Consensus 82 ~l~~~l~~~~~~~~~~~~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~ 161 (344)
++.+++.....++....+++.+|+++|++||||||++++||.++.+.|++|++|++|+||+++++|++.++++.++|++.
T Consensus 81 ~L~~~l~~~~~~~~~~~~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~ 160 (429)
T TIGR01425 81 ELCNLVDPGVEAFTPKKGKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYG 160 (429)
T ss_pred HHHHHhCCCCccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEe
Confidence 99999987666665555678999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHHHHHHHhccCC
Q 019214 162 SYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVS 241 (344)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~~~~~~~~~~~ 241 (344)
.....+|..++.+++++++..+||+|||||||+.+.+..++.++..+.....++.++||+|++.+++..+.+..|++..+
T Consensus 161 ~~~~~dp~~i~~~~l~~~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~~~ 240 (429)
T TIGR01425 161 SYTESDPVKIASEGVEKFKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDSVD 240 (429)
T ss_pred ecCCCCHHHHHHHHHHHHHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhccC
Confidence 77778899999999999888899999999999999988999999988888889999999999999888999999988788
Q ss_pred cCEEEeecCCCCCChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCCCchHHHHH
Q 019214 242 VGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELLQ 321 (344)
Q Consensus 242 ~~~lVinK~D~~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~~~~~~~~~ 321 (344)
+.++|+||+|++.++|..++....+++||.|+++||.++++.+|+|..++|+++|+||+..|++++++..+.+..+++.+
T Consensus 241 ~~g~IlTKlD~~argG~aLs~~~~t~~PI~fig~Ge~v~Dle~f~p~~~~~rilgmgDi~~L~ek~~~~~~~~~~~~~~~ 320 (429)
T TIGR01425 241 VGSVIITKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEIFKTQPFISKLLGMGDIEGLIDKVQDLKLDDNEKALIE 320 (429)
T ss_pred CcEEEEECccCCCCccHHhhhHHHHCCCeEEEcCCCChhhcCcCChHHHHHHHhcCCCcHHHHHHHHHhhhHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998877889999
Q ss_pred HHhcCCcChHHHHHhHHhhcc
Q 019214 322 KLSEGNFTLRIMFSLCFQDSV 342 (344)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~ 342 (344)
++.+++||++||++| ++++.
T Consensus 321 k~~~~~f~l~D~~~q-~~~i~ 340 (429)
T TIGR01425 321 KLKEGTFTLRDMYEQ-FQNLL 340 (429)
T ss_pred HHHhCCCCHHHHHHH-HHHHH
Confidence 999999999999999 98863
No 4
>PRK10867 signal recognition particle protein; Provisional
Probab=100.00 E-value=3.2e-52 Score=398.22 Aligned_cols=339 Identities=35% Similarity=0.563 Sum_probs=313.8
Q ss_pred hHhHHHHHHHHHHHhhcccccChhhhHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcccccccCCChHHHHHHHHHHH
Q 019214 3 LAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNE 82 (344)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 82 (344)
|+.|+++|++.++++++++.++|+.+++.+++|+..|+++||+.+++.++++.+.+....+....+.++.+.+...+.++
T Consensus 2 f~~l~~~l~~~~~~l~~~~~~~e~~i~~~l~ei~~~Ll~aDV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~e 81 (433)
T PRK10867 2 FESLSDRLSSAFKKLRGKGRLTEADIKEALREVRLALLEADVNLPVVKDFIARVKEKAVGQEVLKSLTPGQQVIKIVNDE 81 (433)
T ss_pred hHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccccccCCcHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999887777777788989899999999
Q ss_pred HHhhcCCCCCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCccEEeecCcCcchhHHHHHhhcccCCcceec
Q 019214 83 LCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKK-GWKPALVCADTFRAGAFDQLKQNATKAKIPFYG 161 (344)
Q Consensus 83 l~~~l~~~~~~~~~~~~~~~ii~ivG~~GvGKTTl~~~La~~l~~~-g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~ 161 (344)
+.+++.....+.....+++.+|+++|++||||||++.+||.++..+ |++|++|++|+||+++++|+..|+...++|++.
T Consensus 82 l~~~l~~~~~~~~~~~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~ 161 (433)
T PRK10867 82 LVEILGGENSELNLAAKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFP 161 (433)
T ss_pred HHHHhCCCcceeeecCCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEe
Confidence 9999976554554545668999999999999999999999999988 999999999999999999999999999999887
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHHHHHHHhccCC
Q 019214 162 SYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVS 241 (344)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~~~~~~~~~~~ 241 (344)
.....+|..++.++++.....+||+|||||||+.+.+..++.++..+.....++.+++|+|++.+.+..+.+..|.+..+
T Consensus 162 ~~~~~dp~~i~~~a~~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~~a~~F~~~~~ 241 (433)
T PRK10867 162 SGDGQDPVDIAKAALEEAKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVNTAKAFNEALG 241 (433)
T ss_pred cCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHHHHHHHHhhCC
Confidence 66667899998888888877899999999999998888888898888888889999999999988888899999988788
Q ss_pred cCEEEeecCCCCCChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCCCchHHHHH
Q 019214 242 VGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELLQ 321 (344)
Q Consensus 242 ~~~lVinK~D~~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~~~~~~~~~ 321 (344)
+.++|+||+|.+.++|.+++....+++||.|+++|++++|+.+|+|..+++.++|.||+..|++++++.++.+..+++.+
T Consensus 242 i~giIlTKlD~~~rgG~alsi~~~~~~PI~fig~Ge~v~DLe~f~p~~~~~~ilgmgD~~~l~e~~~~~~~~~~~~~~~~ 321 (433)
T PRK10867 242 LTGVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILGMGDVLSLIEKAQEVVDEEKAEKLAK 321 (433)
T ss_pred CCEEEEeCccCcccccHHHHHHHHHCcCEEEEeCCCccccCccCCHHHHHHHHhCCCChHHHHHHHHHhhCHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998888889999
Q ss_pred HHhcCCcChHHHHHhHHhhcc
Q 019214 322 KLSEGNFTLRIMFSLCFQDSV 342 (344)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~ 342 (344)
++.+++||++||++| ++++.
T Consensus 322 ~~~~g~f~l~d~~~q-~~~~~ 341 (433)
T PRK10867 322 KLKKGKFDLEDFLEQ-LQQMK 341 (433)
T ss_pred HHHhCCCCHHHHHHH-HHHHH
Confidence 999999999999999 98864
No 5
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=100.00 E-value=3.9e-51 Score=390.75 Aligned_cols=339 Identities=35% Similarity=0.581 Sum_probs=312.4
Q ss_pred hHhHHHHHHHHHHHhhcccccChhhhHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcccccccCCChHHHHHHHHHHH
Q 019214 3 LAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNE 82 (344)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 82 (344)
|+.|+++|++.++++++++.++|+.+++.+++|+..|+++||+.+++.++.+.+......+....+.++.+.+...+.++
T Consensus 1 ~~~L~~~~~~~~~~l~~~~~~~e~~i~~~l~ei~~~Ll~aDV~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~e 80 (428)
T TIGR00959 1 FESLSERLQRIFKKLSGRGTITEKNIKEALREIRLALLEADVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEE 80 (428)
T ss_pred CchHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999887777778888889999999999
Q ss_pred HHhhcCCCCCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCccEEeecCcCcchhHHHHHhhcccCCcceec
Q 019214 83 LCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQ-KKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYG 161 (344)
Q Consensus 83 l~~~l~~~~~~~~~~~~~~~ii~ivG~~GvGKTTl~~~La~~l~-~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~ 161 (344)
+.+++.....+..+..+++.+++++|++||||||++.+||.++. +.|++|++|++|+||+++++|+..++...++|++.
T Consensus 81 L~~~l~~~~~~~~~~~~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~ 160 (428)
T TIGR00959 81 LVAILGGENASLNLAKKPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFA 160 (428)
T ss_pred HHHHhCCCCcccccCCCCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEe
Confidence 99999765444444455688999999999999999999999986 57999999999999999999999999999999888
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHHHHHHHhccCC
Q 019214 162 SYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVS 241 (344)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~~~~~~~~~~~ 241 (344)
.....+|..++.++++.+...+||+|||||||+.+.+...+.++..+.....++.+++|+|++.+.+....+..|....+
T Consensus 161 ~~~~~~P~~i~~~al~~~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~~a~~f~~~v~ 240 (428)
T TIGR00959 161 LGKGQSPVEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFNERLG 240 (428)
T ss_pred cCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHHHHHHHHHHhhCC
Confidence 77677888888888888877899999999999998888888999888888889999999999988888889999987788
Q ss_pred cCEEEeecCCCCCChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCCCchHHHHH
Q 019214 242 VGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELLQ 321 (344)
Q Consensus 242 ~~~lVinK~D~~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~~~~~~~~~ 321 (344)
+.++|+||+|.+.++|..++....+++|+.|+++|++++++.+|+|..+++.++|+||+..|++++++.++.+..+++.+
T Consensus 241 i~giIlTKlD~~~~~G~~lsi~~~~~~PI~fi~~Ge~i~dl~~f~p~~~~~~iLg~gD~~~l~e~~~~~~~~~~~~~~~~ 320 (428)
T TIGR00959 241 LTGVVLTKLDGDARGGAALSVRSVTGKPIKFIGVGEKIDDLEPFHPERMASRILGMGDILSLVEKAQEVVDEEEAKKLAE 320 (428)
T ss_pred CCEEEEeCccCcccccHHHHHHHHHCcCEEEEeCCCChhhCccCCHHHHHHHHhCCCChHHHHHHHHHhhCHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998877888999
Q ss_pred HHhcCCcChHHHHHhHHhhcc
Q 019214 322 KLSEGNFTLRIMFSLCFQDSV 342 (344)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~ 342 (344)
++.+++||++||++| ++++.
T Consensus 321 ~~~~~~f~l~d~~~q-~~~~~ 340 (428)
T TIGR00959 321 KMKKGQFDLEDFLEQ-LRQIK 340 (428)
T ss_pred HHHhCCCCHHHHHHH-HHHHH
Confidence 999999999999999 98763
No 6
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=100.00 E-value=2.5e-50 Score=386.14 Aligned_cols=333 Identities=47% Similarity=0.752 Sum_probs=305.1
Q ss_pred HHHHHHHHHHHhhcccccChhhhHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcccccccCCChHHHHHHHHHHHHHh
Q 019214 6 LGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCK 85 (344)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 85 (344)
|+++|++.+++++++++++|+.+++.+++++..|+++||+.+++.++++.+......+.+..+.++.+.+.+.+.+++.+
T Consensus 1 l~~~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLl~adV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~L~~ 80 (437)
T PRK00771 1 LGESLRDALKKLAGKSRIDEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVK 80 (437)
T ss_pred CchHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999887777778888888888999999999
Q ss_pred hcCCCCCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCC
Q 019214 86 MLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTE 165 (344)
Q Consensus 86 ~l~~~~~~~~~~~~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~ 165 (344)
++.....+.... .+|.+++++|++||||||++.+||.++.+.|++|++|++|+||+++++|+..++...++|++.....
T Consensus 81 ~l~~~~~~~~~~-~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~ 159 (437)
T PRK00771 81 LLGEETEPLVLP-LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDN 159 (437)
T ss_pred HhCCCccccccC-CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCc
Confidence 997655443332 4678999999999999999999999999999999999999999999999999999999998876666
Q ss_pred CCHHHHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHHHHHHHhccCCcCEE
Q 019214 166 SDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAV 245 (344)
Q Consensus 166 ~~~~~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~~~~~~~~~~~~~~l 245 (344)
.++...+.++++.+. ++|+|||||||+.+.+..+++++..+.+...+|.+++|+|++.+.+..+.+..|.+..++.++
T Consensus 160 ~d~~~i~~~al~~~~--~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F~~~l~i~gv 237 (437)
T PRK00771 160 KDAVEIAKEGLEKFK--KADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEAVGIGGI 237 (437)
T ss_pred cCHHHHHHHHHHHhh--cCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHHHhcCCCCEE
Confidence 788888888888775 469999999999998889999999988888899999999999998888888888877788999
Q ss_pred EeecCCCCCChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCCCchHHHHHHHhc
Q 019214 246 IVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELLQKLSE 325 (344)
Q Consensus 246 VinK~D~~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~~~~~~~~~~~~~ 325 (344)
|+||+|++.++|.+++....++.||.|+++||+++|+.+|+|..+++.++|+||+..|++++++..+.+..+++.+++.+
T Consensus 238 IlTKlD~~a~~G~~ls~~~~~~~Pi~fig~Ge~v~Dle~f~~~~~~~~ilgmgd~~~l~e~~~~~~~~~~~~~~~~~~~~ 317 (437)
T PRK00771 238 IITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLGMGDLESLLEKVEEALDEEEEEKDVEKMMK 317 (437)
T ss_pred EEecccCCCcccHHHHHHHHHCcCEEEEecCCCcccCCcCCHHHHHHHHhCCCChHHHHHHHHHhhhHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999887778889999999
Q ss_pred CCcChHHHHHhHHhhcc
Q 019214 326 GNFTLRIMFSLCFQDSV 342 (344)
Q Consensus 326 ~~~~~~~~~~~~~~~~~ 342 (344)
++||++||++| ++++.
T Consensus 318 ~~f~l~d~~~q-~~~~~ 333 (437)
T PRK00771 318 GKFTLKDMYKQ-LEAMN 333 (437)
T ss_pred CCcCHHHHHHH-HHHHH
Confidence 99999999999 98874
No 7
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=100.00 E-value=8.8e-43 Score=314.86 Aligned_cols=269 Identities=33% Similarity=0.579 Sum_probs=238.7
Q ss_pred ChhhhHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh-hcccccccCCChHHHHHHHHHHHHHhhcCCCCC---CCC-CCC
Q 019214 24 DEKVLNECLNEITRALLQADVQFKLVREMQTNIKKI-VNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKP---SFT-PKK 98 (344)
Q Consensus 24 ~~~~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~---~~~-~~~ 98 (344)
.++..+..++++...|+++|++.+++..+++.+... ....+. ...+.+.+.+...+..++.+... +.. ...
T Consensus 61 ~~~~de~~~eeLE~~Li~aDvg~e~~~~i~~~l~~~~~~~~~~----~~~~~v~~~l~~~l~~il~~~~~~~~~~~~~~~ 136 (340)
T COG0552 61 KEKLDEDLLEELEELLIEADVGVETAEEIIEELRKREGKKKKI----KDEETVKEALREALIEILRPVDKVDLPLEIPKE 136 (340)
T ss_pred ccchhHHHHHHHHHHHHHccccHHHHHHHHHHHHHHhcccccC----CCHHHHHHHHHHHHHHHhcccccccchhhhccC
Confidence 344455677999999999999999999999999984 333222 23577778888888888875322 222 234
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHH
Q 019214 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (344)
Q Consensus 99 ~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 178 (344)
++|.+|+|+|.+||||||++.+||.+|..+|++|.++.+|+||.++++||..|+.+.+++++....+.||..++++++++
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999998866899999999999999
Q ss_pred HHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcC------CcEEEEEEcCCcchhHHHHHHHHhccCCcCEEEeecCCC
Q 019214 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATN------PDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDG 252 (344)
Q Consensus 179 ~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~------~d~illvvda~~~~~~~~~~~~~~~~~~~~~lVinK~D~ 252 (344)
....++|++||||||++++...++.++.++.+... |+.+++|+|++.|++.+.+++.|++..+++|+|+||+|.
T Consensus 217 Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~l~GiIlTKlDg 296 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVGLDGIILTKLDG 296 (340)
T ss_pred HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcCCceEEEEeccc
Confidence 99999999999999999999999999999888764 456999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhC
Q 019214 253 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLG 296 (344)
Q Consensus 253 ~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g 296 (344)
+.++|.++.+...+++||.|++.||.++|+.+|++.+|+.++++
T Consensus 297 tAKGG~il~I~~~l~~PI~fiGvGE~~~DL~~Fd~~~fv~~L~~ 340 (340)
T COG0552 297 TAKGGIILSIAYELGIPIKFIGVGEGYDDLRPFDAEWFVDALLG 340 (340)
T ss_pred CCCcceeeeHHHHhCCCEEEEeCCCChhhccccCHHHHHHHhhC
Confidence 99999999999999999999999999999999999999988764
No 8
>PRK14974 cell division protein FtsY; Provisional
Probab=100.00 E-value=5.9e-41 Score=311.67 Aligned_cols=275 Identities=36% Similarity=0.632 Sum_probs=248.4
Q ss_pred cChhhhHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcccccccCCChHHHHHHHHHHHHHhhcCCCC-CCC---CCCC
Q 019214 23 IDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGK-PSF---TPKK 98 (344)
Q Consensus 23 ~~~~~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~-~~~---~~~~ 98 (344)
++++++++.+++|+..|.++|++.+++..+++.+.+.+..+....+.++...+.+.+++.+.+++.... ... ....
T Consensus 58 ~~~~~~~~~l~~l~~~Ll~~dv~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~ 137 (336)
T PRK14974 58 IKEKDIEDLLEELELELLESDVALEVAEEILESLKEKLVGKKVKRGEDVEEIVKNALKEALLEVLSVGDLFDLIEEIKSK 137 (336)
T ss_pred cCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHHHHHHhCCCcchhhhhhhhcc
Confidence 788999999999999999999999999999999999887777766777778788999999999887543 100 1123
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHH
Q 019214 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (344)
Q Consensus 99 ~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 178 (344)
+++.+++|+|++||||||++++||..+...|++|+++++|+||.++.+|+..++...+++++....+.++..++.++++.
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~ 217 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEH 217 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999988877788898888888888
Q ss_pred HHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHHHHHHHhccCCcCEEEeecCCCCCChhh
Q 019214 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGG 258 (344)
Q Consensus 179 ~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~~~~~~~~~~~~~~lVinK~D~~~~~~~ 258 (344)
....++|+|||||||+.+.+..++.+++.+.+...+|.+++|+|++.+.+..+++..|.+..++.++|+||+|++.++|.
T Consensus 218 ~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIlTKlD~~~~~G~ 297 (336)
T PRK14974 218 AKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVDADAKGGA 297 (336)
T ss_pred HHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcCCCCEEEEeeecCCCCccH
Confidence 87789999999999999988899999998888888999999999999988888899998778889999999999999999
Q ss_pred HHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCC
Q 019214 259 ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGM 297 (344)
Q Consensus 259 ~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~ 297 (344)
.++.....++|+.|+++||+++|+.++++..+++.++|+
T Consensus 298 ~ls~~~~~~~Pi~~i~~Gq~v~Dl~~~~~~~~v~~llg~ 336 (336)
T PRK14974 298 ALSIAYVIGKPILFLGVGQGYDDLIPFDPDWFVDKLLGE 336 (336)
T ss_pred HHHHHHHHCcCEEEEeCCCChhhcccCCHHHHHHHHhCC
Confidence 999999999999999999999999999999999999874
No 9
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=100.00 E-value=1.2e-39 Score=302.36 Aligned_cols=287 Identities=32% Similarity=0.545 Sum_probs=246.8
Q ss_pred hHhHHHHHHHHHHHhhcccccChhhhHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcccccccCCChHHHHHHHHHHH
Q 019214 3 LAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNE 82 (344)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 82 (344)
|.+.+.++...++++.++..++++. +++++..|.++|++++++..+++.+........ ..+.+.+.+.+.+.
T Consensus 24 ~~~~~~~~~~~~~~l~~~~~~~~~~----~~~l~~~L~~~dv~~~~a~~i~~~~~~~~~~~~----~~~~~~~~~~l~~~ 95 (318)
T PRK10416 24 LSKTRENFGEGINGLFAKKKIDEDL----LEELEELLIEADVGVETTEEIIEELRERVKRKN----LKDPEELKELLKEE 95 (318)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHHHCCCCHHHHHHHHHHHHHHHhccC----CCCHHHHHHHHHHH
Confidence 4556677778888888777888874 488999999999999999999999988764333 23456678889999
Q ss_pred HHhhcCCCCCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceecc
Q 019214 83 LCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGS 162 (344)
Q Consensus 83 l~~~l~~~~~~~~~~~~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~ 162 (344)
+.+++.....+.....+++.+++++||+|+||||++.+||..+...|++|+++++|+||.++.+|+..|+.+.+++++..
T Consensus 96 l~~~l~~~~~~~~~~~~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~ 175 (318)
T PRK10416 96 LAEILEPVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQ 175 (318)
T ss_pred HHHHhCcCCccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEe
Confidence 99999754334433345678999999999999999999999999999999999999999999999999999999998776
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhh------cCCcEEEEEEcCCcchhHHHHHHHH
Q 019214 163 YTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEA------TNPDLVIFVMDSSIGQAAFDQAQAF 236 (344)
Q Consensus 163 ~~~~~~~~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~------~~~d~illvvda~~~~~~~~~~~~~ 236 (344)
....++.....+.+......+||+|||||||+.+.+..++++++.+.+. ..++.+++|+|++.+.+....+..|
T Consensus 176 ~~~~dpa~~v~~~l~~~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f 255 (318)
T PRK10416 176 KEGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAF 255 (318)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHH
Confidence 6677887777777777777899999999999999888888888876653 2478899999999998888888888
Q ss_pred hccCCcCEEEeecCCCCCChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCC
Q 019214 237 KQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGM 297 (344)
Q Consensus 237 ~~~~~~~~lVinK~D~~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~ 297 (344)
.+..++.++|+||+|++..+|.+++.+..+++|+.|+++||+++|+.++++..+++.++|+
T Consensus 256 ~~~~~~~giIlTKlD~t~~~G~~l~~~~~~~~Pi~~v~~Gq~~~Dl~~~~~~~~~~~ll~~ 316 (318)
T PRK10416 256 HEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALLGG 316 (318)
T ss_pred HhhCCCCEEEEECCCCCCCccHHHHHHHHHCCCEEEEeCCCChhhCccCCHHHHHHHHhCC
Confidence 8777889999999999999999999999999999999999999999999999999999875
No 10
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=100.00 E-value=3e-38 Score=287.43 Aligned_cols=262 Identities=32% Similarity=0.569 Sum_probs=226.0
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcccccccCCChHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEc
Q 019214 29 NECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVG 108 (344)
Q Consensus 29 ~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~ii~ivG 108 (344)
++.+++|+..|.+.|++++++.++++.+.+........ ....+.+.+.+.+.+.+.....+.....+++++++++|
T Consensus 4 ~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~----~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~vi~l~G 79 (272)
T TIGR00064 4 EDFFEELEEILLESDVGYEVVEKIIEALKKELKGKKVK----DAELLKEILKEYLKEILKETDLELIVEENKPNVILFVG 79 (272)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccCC----CHHHHHHHHHHHHHHHHcccchhhcccCCCCeEEEEEC
Confidence 45678999999999999999999999998876543332 23456677888888887653223333345678999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHhCCCCEEE
Q 019214 109 LQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLII 188 (344)
Q Consensus 109 ~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~d~vl 188 (344)
++||||||++.+||.++.+.|++|+++++|+||.++.+++..|+.+.+++++......++.....+.+......+||+||
T Consensus 80 ~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~~~~D~Vi 159 (272)
T TIGR00064 80 VNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNIDVVL 159 (272)
T ss_pred CCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHHCCCCEEE
Confidence 99999999999999999999999999999999999999999999999999876666778888777878777778999999
Q ss_pred EcCCCCCcchHHHHHHHHHhhhhcC------CcEEEEEEcCCcchhHHHHHHHHhccCCcCEEEeecCCCCCChhhHHHH
Q 019214 189 VDTSGRHKQEAALFEEMRQVSEATN------PDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGALSA 262 (344)
Q Consensus 189 IDT~G~~~~~~~~~~~l~~~~~~~~------~d~illvvda~~~~~~~~~~~~~~~~~~~~~lVinK~D~~~~~~~~~~~ 262 (344)
|||||+.+.+...+.+++.+.+... +|.+++|+|++.+.+....+..|.+..++.++|+||+|++.++|..++.
T Consensus 160 IDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~~~~g~IlTKlDe~~~~G~~l~~ 239 (272)
T TIGR00064 160 IDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGGIILSI 239 (272)
T ss_pred EeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHHhhCCCCEEEEEccCCCCCccHHHHH
Confidence 9999999888888888888776655 8999999999988888888888887778899999999999999999999
Q ss_pred HHHhCCCeEEEecCCCCCcCcCCChHHHHHHH
Q 019214 263 VAATKSPVIFIGTGEHMDEFEVFDVKPFVSRL 294 (344)
Q Consensus 263 ~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~ 294 (344)
...+++|+.|+++||+++|+.++++..+++.+
T Consensus 240 ~~~~~~Pi~~~~~Gq~~~dl~~~~~~~~~~~l 271 (272)
T TIGR00064 240 AYELKLPIKFIGVGEKIDDLAPFDADWFVEAL 271 (272)
T ss_pred HHHHCcCEEEEeCCCChHhCccCCHHHHHHHh
Confidence 99999999999999999999999999988775
No 11
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=100.00 E-value=6.9e-38 Score=271.90 Aligned_cols=196 Identities=42% Similarity=0.654 Sum_probs=181.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
|++++++||+||||||++++||.++..+|++|++|++|+||.|+++||+.|++..++|++......++...+.++++++.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 57999999999999999999999999889999999999999999999999999999999888888899999999999998
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHHHHHHHhccCCcCEEEeecCCCCCChhhHH
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGAL 260 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~~~~~~~~~~~~~~lVinK~D~~~~~~~~~ 260 (344)
.+++|+|||||||+++.+...+++++.+.....++.+++|++++.+.+..+....|.+..++.++|+||+|++.+.|.++
T Consensus 81 ~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~lIlTKlDet~~~G~~l 160 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAFGIDGLILTKLDETARLGALL 160 (196)
T ss_dssp HTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEEEEESTTSSSTTHHHH
T ss_pred hcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcccCceEEEEeecCCCCcccce
Confidence 88999999999999999989999999888888899999999999998888888888887888999999999999999999
Q ss_pred HHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhC
Q 019214 261 SAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLG 296 (344)
Q Consensus 261 ~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g 296 (344)
+.+...+.|+.|+++||+++|+.++++..+++.++|
T Consensus 161 ~~~~~~~~Pi~~it~Gq~V~Dl~~~~~~~l~~~llg 196 (196)
T PF00448_consen 161 SLAYESGLPISYITTGQRVDDLEPASPERLASRLLG 196 (196)
T ss_dssp HHHHHHTSEEEEEESSSSTTGEEE-THHHHHHHHHT
T ss_pred eHHHHhCCCeEEEECCCChhcCccCCHHHHHHHhcC
Confidence 999999999999999999999999999999999876
No 12
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-35 Score=275.52 Aligned_cols=292 Identities=24% Similarity=0.478 Sum_probs=259.4
Q ss_pred HhHHHHHHHHHHHhhcccccChhhhHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcccccccCCChHHHHHHHHHHHH
Q 019214 4 AQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNEL 83 (344)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 83 (344)
.+..+..-++++.+-+...++|++++|+++.+++.|+...|..+.|..+++.+...+..+.+..+.+-+.-+.+++++.|
T Consensus 274 ~k~~g~aFg~fkglvG~K~L~eeDL~pvL~kM~ehLitKNVA~eiA~~LcEsV~a~Legkkv~sfs~V~~Tvk~Al~daL 353 (587)
T KOG0781|consen 274 KKTVGGAFGLFKGLVGSKSLSEEDLNPVLDKMTEHLITKNVAAEIAEKLCESVAASLEGKKVGSFSTVESTVKEALRDAL 353 (587)
T ss_pred hcchhhHHHHHHhhcccccccHhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHH
Confidence 34556677889999999999999999999999999999999999999999999999998888777666777889999999
Q ss_pred HhhcCCCCCC-------CCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccC-
Q 019214 84 CKMLDPGKPS-------FTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKA- 155 (344)
Q Consensus 84 ~~~l~~~~~~-------~~~~~~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~- 155 (344)
.+++.+...- .....++|.+|.|+|-+||||||-++++|.+|.+++.+|.|+.||+||.|+++||+.+.++.
T Consensus 354 vQILTP~~sVDlLRdI~sar~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~ 433 (587)
T KOG0781|consen 354 VQILTPQRSVDLLRDIMSARRRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLS 433 (587)
T ss_pred HHHcCCCchhhHHHHHHHHHhcCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHH
Confidence 9999764321 11234588999999999999999999999999999999999999999999999999998876
Q ss_pred -----CcceeccCCCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHH
Q 019214 156 -----KIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF 230 (344)
Q Consensus 156 -----~v~~~~~~~~~~~~~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~ 230 (344)
-++++....+.|+..++++++++.+.++||+|+|||||+++.+..++..+.++.....||.+++|-.|-.|.+.+
T Consensus 434 ~l~~~~v~lfekGYgkd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv 513 (587)
T KOG0781|consen 434 ALHGTMVELFEKGYGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSV 513 (587)
T ss_pred HhccchhHHHhhhcCCChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHH
Confidence 678888888999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHhccC-------CcCEEEeecCCCCC-ChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHh
Q 019214 231 DQAQAFKQSV-------SVGAVIVTKMDGHA-KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLL 295 (344)
Q Consensus 231 ~~~~~~~~~~-------~~~~lVinK~D~~~-~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~ 295 (344)
+++..|+..+ .++++++||+|-.. ..|..+++.+.++.||.|++.||...|++.....+.++.+.
T Consensus 514 ~q~~~fn~al~~~~~~r~id~~~ltk~dtv~d~vg~~~~m~y~~~~pi~fvg~gqtysdlr~l~v~~vv~~lm 586 (587)
T KOG0781|consen 514 DQLKKFNRALADHSTPRLIDGILLTKFDTVDDKVGAAVSMVYITGKPILFVGVGQTYSDLRKLNVKAVVATLM 586 (587)
T ss_pred HHHHHHHHHHhcCCCccccceEEEEeccchhhHHHHHhhheeecCCceEEEecCcchhhhhhccHHHHHHHhh
Confidence 8888776532 37899999999864 56899999999999999999999999998888777776653
No 13
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=1.7e-33 Score=261.75 Aligned_cols=257 Identities=19% Similarity=0.340 Sum_probs=209.7
Q ss_pred hHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcccccccCCChHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEEEEE
Q 019214 28 LNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFV 107 (344)
Q Consensus 28 ~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~ii~iv 107 (344)
.+..++.|+..|.+.|++++++..+++.+........ ..+. ..+.+.+.+.+...+..... . ..++++|+|+
T Consensus 176 ~~~~~~~i~~~L~~~dV~~~~~~~ll~~~~~~~~~~~---~~~~-~~~~~~l~~~l~~~l~~~~~---~-~~~~~vI~LV 247 (436)
T PRK11889 176 VPFIIQKVIRMLEQNDVEQYFIHAYAEKLKVKFENAT---MITE-EEVIEYILEDMRSHFNTENV---F-EKEVQTIALI 247 (436)
T ss_pred cchHHHHHHHHHHHCCCCHHHHHHHHHHHHhhhcccc---cCCH-HHHHHHHHHHHHHHhccccc---c-ccCCcEEEEE
Confidence 4556688999999999999999999998776432211 1122 34456666777666654211 1 2345789999
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh-CCCCE
Q 019214 108 GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK-ENCDL 186 (344)
Q Consensus 108 G~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~-~~~d~ 186 (344)
||+||||||++++||..+..+|++|+++++|+||.++++|+..++...++|++... ++..+ .+++..+.. .++|+
T Consensus 248 GptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~---d~~~L-~~aL~~lk~~~~~Dv 323 (436)
T PRK11889 248 GPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR---DEAAM-TRALTYFKEEARVDY 323 (436)
T ss_pred CCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecC---CHHHH-HHHHHHHHhccCCCE
Confidence 99999999999999999999999999999999999999999999999999987543 33333 356666653 37999
Q ss_pred EEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc-hhHHHHHHHHhccCCcCEEEeecCCCCCChhhHHHHHHH
Q 019214 187 IIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG-QAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVAA 265 (344)
Q Consensus 187 vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~-~~~~~~~~~~~~~~~~~~lVinK~D~~~~~~~~~~~~~~ 265 (344)
|||||||+.+.+...+.++..+.....++.+++|++++.+ .+..+++..|.. .++.++|+||+|++.++|.+++++..
T Consensus 324 VLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~~-~~idglI~TKLDET~k~G~iLni~~~ 402 (436)
T PRK11889 324 ILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKD-IHIDGIVFTKFDETASSGELLKIPAV 402 (436)
T ss_pred EEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHhcC-CCCCEEEEEcccCCCCccHHHHHHHH
Confidence 9999999998888888888887777778999999999765 566778888876 78899999999999999999999999
Q ss_pred hCCCeEEEecCCCCC-cCcCCChHHHHHHHhCC
Q 019214 266 TKSPVIFIGTGEHMD-EFEVFDVKPFVSRLLGM 297 (344)
Q Consensus 266 ~~~pv~~~~~g~~~~-~l~~~~~~~~is~~~g~ 297 (344)
+++|+.|+++||++| |+..+++..+++.++|.
T Consensus 403 ~~lPIsyit~GQ~VPeDI~~A~~~~L~~~llg~ 435 (436)
T PRK11889 403 SSAPIVLMTDGQDVKKNIHIATAEHLAKQMLQT 435 (436)
T ss_pred HCcCEEEEeCCCCCCcchhhCCHHHHHHHHhcC
Confidence 999999999999995 79999999998888774
No 14
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=3.8e-33 Score=258.88 Aligned_cols=278 Identities=19% Similarity=0.302 Sum_probs=217.9
Q ss_pred hHHHHHHHHHHHhhcccccChhhhHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcccccccCCChHHHHHHHHHHHHH
Q 019214 5 QLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELC 84 (344)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 84 (344)
.++..+..+=.++..+- |+|+. ...++++.|.+.|++.+++.++.+.+........ +.+ ...+.+.+.+.+.
T Consensus 121 ~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~L~~~gV~~~~~~~l~~~~~~~~~~~~---~~~-~~~v~~~~~~~L~ 192 (407)
T PRK12726 121 AMRLELAALNRELAVKM-REERE---QNSDFVKFLKGRGISDTYVADFMQAGRKQFKQVE---TAH-LDDITDWFVPYLS 192 (407)
T ss_pred HHHHHHHHHHHHHHHHh-hhhhc---ccHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc---ccc-HHHHHHHHHHHhc
Confidence 34445544445554333 55552 1258999999999999999999998866532211 112 2445577777777
Q ss_pred hhcCCCCCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCC
Q 019214 85 KMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYT 164 (344)
Q Consensus 85 ~~l~~~~~~~~~~~~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~ 164 (344)
..+..... .. ..++++++++||+||||||++++||..+..+|++|++|++|+||+++.+|+..++...++|++..
T Consensus 193 ~~l~~~~~-~~--~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~-- 267 (407)
T PRK12726 193 GKLAVEDS-FD--LSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVA-- 267 (407)
T ss_pred CcEeeCCC-ce--ecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEec--
Confidence 77654321 22 23568999999999999999999999998889999999999999999999999999999987653
Q ss_pred CCCHHHHHHHHHHHHH-hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc-hhHHHHHHHHhccCCc
Q 019214 165 ESDPVRIAVEGVETFK-KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG-QAAFDQAQAFKQSVSV 242 (344)
Q Consensus 165 ~~~~~~~~~~~l~~~~-~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~-~~~~~~~~~~~~~~~~ 242 (344)
.++.. +.++++.+. ..++|+|||||||..+.+...+.++..+.....++.+++|++++.. .+..+.+..|. ..++
T Consensus 268 -~dp~d-L~~al~~l~~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~~~f~-~l~i 344 (407)
T PRK12726 268 -TSPAE-LEEAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTILPKLA-EIPI 344 (407)
T ss_pred -CCHHH-HHHHHHHHHhcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccHHHHHHHHHhcC-cCCC
Confidence 34444 356666665 2579999999999998888888898888877788898999998655 34455555554 4678
Q ss_pred CEEEeecCCCCCChhhHHHHHHHhCCCeEEEecCCCCC-cCcCCChHHHHHHHhCCC
Q 019214 243 GAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMD-EFEVFDVKPFVSRLLGMG 298 (344)
Q Consensus 243 ~~lVinK~D~~~~~~~~~~~~~~~~~pv~~~~~g~~~~-~l~~~~~~~~is~~~g~g 298 (344)
.++|+||+|++.++|.+++....+++||.|+++||+++ ++..+++..++..++|++
T Consensus 345 ~glI~TKLDET~~~G~~Lsv~~~tglPIsylt~GQ~VpdDi~~a~~~~Lv~~ll~~~ 401 (407)
T PRK12726 345 DGFIITKMDETTRIGDLYTVMQETNLPVLYMTDGQNITENIFRPKSRWLAERFVGTD 401 (407)
T ss_pred CEEEEEcccCCCCccHHHHHHHHHCCCEEEEecCCCCCcccCCCCHHHHHHHHhccc
Confidence 99999999999999999999999999999999999996 688999999999999876
No 15
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=9.9e-33 Score=261.05 Aligned_cols=266 Identities=21% Similarity=0.295 Sum_probs=208.4
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcccccccCCChHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcC
Q 019214 30 ECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGL 109 (344)
Q Consensus 30 ~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~ii~ivG~ 109 (344)
+.++.+...|.++|++.+++..+++.+......... .....+.+.+...+.+.+.... +. .....+.+++++||
T Consensus 109 ~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~----~~~~~v~~~l~~~l~~~i~~~~-~~-~~~~~~~vi~lvGp 182 (388)
T PRK12723 109 PTILKIEDILRENDFSESYIKDINEFIKKEFSLSDL----DDYDKVRDSVIIYIAKTIKCSG-SI-IDNLKKRVFILVGP 182 (388)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhhhc----CCHHHHHHHHHHHHHHHhhccC-cc-ccCCCCeEEEEECC
Confidence 457899999999999999999999998776533222 1234455667777777664321 21 12235689999999
Q ss_pred CCCCHHHHHHHHHHHHHH----cCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHhCCCC
Q 019214 110 QGSGKTTTCTKYAYYHQK----KGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCD 185 (344)
Q Consensus 110 ~GvGKTTl~~~La~~l~~----~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~d 185 (344)
+||||||++++||..+.. .|++|++|++|+||.++.+|+..|++..++|+..... + ..+...+..+ .++|
T Consensus 183 tGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~---~-~~l~~~L~~~--~~~D 256 (388)
T PRK12723 183 TGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIES---F-KDLKEEITQS--KDFD 256 (388)
T ss_pred CCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCc---H-HHHHHHHHHh--CCCC
Confidence 999999999999998863 5789999999999999999999999999999765433 1 2233444444 4899
Q ss_pred EEEEcCCCCCcchHHHHHHHHHhhhhcCC-cEEEEEEcCCcchhHHH-HHHHHhccCCcCEEEeecCCCCCChhhHHHHH
Q 019214 186 LIIVDTSGRHKQEAALFEEMRQVSEATNP-DLVIFVMDSSIGQAAFD-QAQAFKQSVSVGAVIVTKMDGHAKGGGALSAV 263 (344)
Q Consensus 186 ~vlIDT~G~~~~~~~~~~~l~~~~~~~~~-d~illvvda~~~~~~~~-~~~~~~~~~~~~~lVinK~D~~~~~~~~~~~~ 263 (344)
+|||||||+++.+...+.++..+.....+ +.+++|+|++.+..... ....|. ..++.++|+||.|++.++|.+++.+
T Consensus 257 lVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~-~~~~~~~I~TKlDet~~~G~~l~~~ 335 (388)
T PRK12723 257 LVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFS-PFSYKTVIFTKLDETTCVGNLISLI 335 (388)
T ss_pred EEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhc-CCCCCEEEEEeccCCCcchHHHHHH
Confidence 99999999988765556677766665443 47999999998854433 444443 3568899999999999999999999
Q ss_pred HHhCCCeEEEecCCCC-CcCcCCChHHHHHHHhCCCChhHHHHHHHh
Q 019214 264 AATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (344)
Q Consensus 264 ~~~~~pv~~~~~g~~~-~~l~~~~~~~~is~~~g~g~i~~l~~~i~~ 309 (344)
..+++|+.|+++||++ +|+.++++..+++.+.|.. +.+=.+.|.+
T Consensus 336 ~~~~~Pi~yit~Gq~vPeDl~~~~~~~~~~~l~g~~-~~~~~~~~~~ 381 (388)
T PRK12723 336 YEMRKEVSYVTDGQIVPHNISIAEPLTFIKKINGYR-ISDDAEFIRK 381 (388)
T ss_pred HHHCCCEEEEeCCCCChhhhhhCCHHHHHHHhcCCC-ccchHHHHHH
Confidence 9999999999999999 5899999999999999998 7665555555
No 16
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=1.6e-32 Score=258.72 Aligned_cols=262 Identities=21% Similarity=0.293 Sum_probs=206.1
Q ss_pred ccChhhhHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcccccccCCChHHHHHHHHHHHHHhhcCCCCCCCCCC-CCC
Q 019214 22 IIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPK-KGK 100 (344)
Q Consensus 22 ~~~~~~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-~~~ 100 (344)
++++++..+.++.++..|.+.|++.+++.++++.+...+...... ....+.+.+.+.+.+.+......+... ..+
T Consensus 147 ~i~~~~~~~~~~~L~~~Ll~~gV~~~la~~Li~~l~~~~~~~~~~----~~~~~~~~l~~~L~~~l~~~~~~~~~~g~~~ 222 (432)
T PRK12724 147 TIVRKEKDSPLQRLGERLVREGMSQSYVEEMASKLEERLSPVDQG----RNHNVTERAVTYLEERVSVDSDLFSGTGKNQ 222 (432)
T ss_pred cccHhhhhhHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcccccc----chHHHHHHHHHHHHHhcccchhhhhhcccCC
Confidence 348888989999999999999999999999999988755332221 123455777777877775322111111 124
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH-HHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYH-QKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l-~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
+.+++++||+||||||++.+||..+ ...|++|+++++|+||.++.+++..++...++|++... ........+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~-------~~~~l~~~l 295 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVK-------DIKKFKETL 295 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehH-------HHHHHHHHH
Confidence 5789999999999999999999876 56799999999999999999999999999998875421 122333444
Q ss_pred HhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhc---CCcEEEEEEcCCcchhHH-HHHHHHhccCCcCEEEeecCCCCCC
Q 019214 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEAT---NPDLVIFVMDSSIGQAAF-DQAQAFKQSVSVGAVIVTKMDGHAK 255 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~---~~d~illvvda~~~~~~~-~~~~~~~~~~~~~~lVinK~D~~~~ 255 (344)
...++|+|+|||||+.+.+...++++..+.... .+..+++|+|++.+.+.. +....| ...++.++|+||+|++.+
T Consensus 296 ~~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f-~~~~~~glIlTKLDEt~~ 374 (432)
T PRK12724 296 ARDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY-ESLNYRRILLTKLDEADF 374 (432)
T ss_pred HhCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh-cCCCCCEEEEEcccCCCC
Confidence 456899999999999887778888887776653 355799999999886544 445555 667889999999999999
Q ss_pred hhhHHHHHHHhCCCeEEEecCCCCC-cCcCCChHHHHHHHh
Q 019214 256 GGGALSAVAATKSPVIFIGTGEHMD-EFEVFDVKPFVSRLL 295 (344)
Q Consensus 256 ~~~~~~~~~~~~~pv~~~~~g~~~~-~l~~~~~~~~is~~~ 295 (344)
+|.+++....+++|+.|+++||+++ |+.++++..++..++
T Consensus 375 ~G~il~i~~~~~lPI~ylt~GQ~VPeDi~~A~~~~l~~~i~ 415 (432)
T PRK12724 375 LGSFLELADTYSKSFTYLSVGQEVPFDILNATKNLMAECVV 415 (432)
T ss_pred ccHHHHHHHHHCCCEEEEecCCCCCCCHHHhhHHHHHHHhc
Confidence 9999999999999999999999995 788888887776654
No 17
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=100.00 E-value=4.5e-32 Score=252.17 Aligned_cols=191 Identities=30% Similarity=0.468 Sum_probs=167.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHH--HcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQ--KKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~--~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 178 (344)
++++++|||+||||||++++||+.+. ...++|++|+.|+||.||++||+.|+..+++|+..+.+..+. ..++..
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el----~~ai~~ 278 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKEL----AEAIEA 278 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHH----HHHHHH
Confidence 58999999999999999999999998 456899999999999999999999999999999876664432 334444
Q ss_pred HHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc-hhHHHHHHHHhccCCcCEEEeecCCCCCChh
Q 019214 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG-QAAFDQAQAFKQSVSVGAVIVTKMDGHAKGG 257 (344)
Q Consensus 179 ~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~-~~~~~~~~~~~~~~~~~~lVinK~D~~~~~~ 257 (344)
+. ++|+|||||+|+++.+...+++|..+.....+..+++|++++.. .+..+....|. ..++.++|+||+|+++..|
T Consensus 279 l~--~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~-~~~i~~~I~TKlDET~s~G 355 (407)
T COG1419 279 LR--DCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFS-LFPIDGLIFTKLDETTSLG 355 (407)
T ss_pred hh--cCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhc-cCCcceeEEEcccccCchh
Confidence 43 78999999999999999999999988887777889999999876 44555667775 4678999999999999999
Q ss_pred hHHHHHHHhCCCeEEEecCCCCC-cCcCCChHHHHHHHhCCC
Q 019214 258 GALSAVAATKSPVIFIGTGEHMD-EFEVFDVKPFVSRLLGMG 298 (344)
Q Consensus 258 ~~~~~~~~~~~pv~~~~~g~~~~-~l~~~~~~~~is~~~g~g 298 (344)
...+.+.++++||.|+++||++| |+..+.+.+++++..|.-
T Consensus 356 ~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g~~ 397 (407)
T COG1419 356 NLFSLMYETRLPVSYVTNGQRVPEDIVVANPDYLVRRILGTF 397 (407)
T ss_pred HHHHHHHHhCCCeEEEeCCCCCCchhhhcChHHHHHHHhccc
Confidence 99999999999999999999996 799999999999998864
No 18
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=1.7e-31 Score=268.00 Aligned_cols=252 Identities=23% Similarity=0.329 Sum_probs=204.0
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcccccccCCChHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEc
Q 019214 29 NECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVG 108 (344)
Q Consensus 29 ~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~ii~ivG 108 (344)
++...+++..|.+.|++.+++.++++++.... ++ ..+.+.+.+.+.+.+...... ...-.++++++|+|
T Consensus 124 ~~~~~~l~~~Ll~~dv~~~la~~l~~~l~~~~---------~~-~~~~~~l~~~L~~~l~il~~~-~~~~~~g~Vi~lVG 192 (767)
T PRK14723 124 DPLRASLFRWLLGAGFSGQLARALLERLPVGY---------DR-PAAMAWIRNELATHLPVLRDE-DALLAQGGVLALVG 192 (767)
T ss_pred hHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcC---------CH-HHHHHHHHHHHHHHhhhccCC-CcccCCCeEEEEEC
Confidence 34557899999999999999999999876532 22 234577777777766422111 11112357999999
Q ss_pred CCCCCHHHHHHHHHHHHH-HcC-CccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHhCCCCE
Q 019214 109 LQGSGKTTTCTKYAYYHQ-KKG-WKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDL 186 (344)
Q Consensus 109 ~~GvGKTTl~~~La~~l~-~~g-~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~d~ 186 (344)
|+||||||++.+|+..+. ..| ++|++++.|+||.++.+|+..|+...+++++... ++.. +.+.++.+. ++|+
T Consensus 193 pnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~---~~~~-l~~al~~~~--~~D~ 266 (767)
T PRK14723 193 PTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVK---DAAD-LRFALAALG--DKHL 266 (767)
T ss_pred CCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccC---CHHH-HHHHHHHhc--CCCE
Confidence 999999999999999884 566 6999999999999999999999999999876543 3433 456666654 7899
Q ss_pred EEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH-HHHHHHHhccC--CcCEEEeecCCCCCChhhHHHHH
Q 019214 187 IIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA-FDQAQAFKQSV--SVGAVIVTKMDGHAKGGGALSAV 263 (344)
Q Consensus 187 vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~-~~~~~~~~~~~--~~~~lVinK~D~~~~~~~~~~~~ 263 (344)
|||||||+++.+..+++++..+.....++.+++|+|++.+.+. .+....|.... ++.++|+||+|++.++|.++++.
T Consensus 267 VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIlTKLDEt~~~G~iL~i~ 346 (767)
T PRK14723 267 VLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCIITKLDEATHLGPALDTV 346 (767)
T ss_pred EEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEEeccCCCCCccHHHHHH
Confidence 9999999998888888888777777778999999999877544 44667776532 67899999999999999999999
Q ss_pred HHhCCCeEEEecCCCC-CcCcCCChHHHHHHHhCC
Q 019214 264 AATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGM 297 (344)
Q Consensus 264 ~~~~~pv~~~~~g~~~-~~l~~~~~~~~is~~~g~ 297 (344)
..+++||.|+++||++ +|+.++++..++..+++.
T Consensus 347 ~~~~lPI~yit~GQ~VPdDL~~a~~~~lv~~ll~~ 381 (767)
T PRK14723 347 IRHRLPVHYVSTGQKVPEHLELAQADELVDRAFAT 381 (767)
T ss_pred HHHCCCeEEEecCCCChhhcccCCHHHHHHHHhcc
Confidence 9999999999999999 699999999999999873
No 19
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=100.00 E-value=1.9e-31 Score=256.58 Aligned_cols=256 Identities=24% Similarity=0.368 Sum_probs=205.3
Q ss_pred hhhhHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcccccccCCChHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEE
Q 019214 25 EKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVI 104 (344)
Q Consensus 25 ~~~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~ii 104 (344)
....++..+.++..|.+.|++.+++..+++.+......... .+.+.+.+.+.+.+....... . .+++++
T Consensus 156 ~~~~~~~~~~~~~~L~~~gv~~~~~~~l~~~~~~~~~~~~~--------~~~~~~~~~L~~~l~~~~~~~-~--~~~~~i 224 (424)
T PRK05703 156 VERIPPEFAELYKRLKRSGLSPEIAEKLLKLLLEHMPPRER--------TAWRYLLELLANMIPVRVEDI-L--KQGGVV 224 (424)
T ss_pred cccchHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHHHHHHhCcccccc-c--cCCcEE
Confidence 34567788999999999999999999999988775432110 245778888888886544333 2 234699
Q ss_pred EEEcCCCCCHHHHHHHHHHHHH--HcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHhC
Q 019214 105 MFVGLQGSGKTTTCTKYAYYHQ--KKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (344)
Q Consensus 105 ~ivG~~GvGKTTl~~~La~~l~--~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 182 (344)
+|+||+||||||++.+||.++. ..|++|++|++|+||.++.+++..|+...++|++......+. ...+..+ .
T Consensus 225 ~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l----~~~l~~~--~ 298 (424)
T PRK05703 225 ALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKEL----AKALEQL--R 298 (424)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhH----HHHHHHh--C
Confidence 9999999999999999999987 457999999999999999999999999999998665443322 2334433 3
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhh-hcCCcEEEEEEcCCcchhHH-HHHHHHhccCCcCEEEeecCCCCCChhhHH
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSE-ATNPDLVIFVMDSSIGQAAF-DQAQAFKQSVSVGAVIVTKMDGHAKGGGAL 260 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~-~~~~d~illvvda~~~~~~~-~~~~~~~~~~~~~~lVinK~D~~~~~~~~~ 260 (344)
++|+|||||||+.+.+...+.++..+.. ...+..+++|++++.+.... +....|. ..++.++|+||+|++..+|.++
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~-~~~~~~vI~TKlDet~~~G~i~ 377 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFS-RLPLDGLIFTKLDETSSLGSIL 377 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhC-CCCCCEEEEecccccccccHHH
Confidence 7999999999998887777777777666 33467889999998875444 4455554 4567899999999999999999
Q ss_pred HHHHHhCCCeEEEecCCCC-CcCcCCChHHHHHHHhCCC
Q 019214 261 SAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMG 298 (344)
Q Consensus 261 ~~~~~~~~pv~~~~~g~~~-~~l~~~~~~~~is~~~g~g 298 (344)
+.+...++|+.|+++||++ +|+.++++..+++.++|..
T Consensus 378 ~~~~~~~lPv~yit~Gq~VpdDl~~a~~~~l~~~ll~~~ 416 (424)
T PRK05703 378 SLLIESGLPISYLTNGQRVPDDIKVANPEELVRLLLGGF 416 (424)
T ss_pred HHHHHHCCCEEEEeCCCCChhhhhhCCHHHHHHHHhccc
Confidence 9999999999999999999 5899999999999888754
No 20
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=100.00 E-value=9.2e-31 Score=252.58 Aligned_cols=274 Identities=21% Similarity=0.311 Sum_probs=204.1
Q ss_pred HhHHHHHHHHHHHhhcccccChhhhHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcccccccCCChHHHHHHHHHHHH
Q 019214 4 AQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNEL 83 (344)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 83 (344)
+++++.|...+.++... +.+...+...+++..|...|++.+++.++++++...... ....++++..+
T Consensus 173 ~~lr~~l~~~~~~l~~~---~~~~~~p~~~~l~~~Ll~~dv~~~la~~l~~~l~~~~~~----------~~~~~~l~~~l 239 (484)
T PRK06995 173 RSLRGMLEEQLASLAWG---ERQRRDPVRAALLKHLLAAGFSAQLVRMLVDNLPEGDDA----------EAALDWVQSAL 239 (484)
T ss_pred HHHHHHHHHHHHHHhcc---ccccccHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhhch----------hHHHHHHHHHH
Confidence 34555555555555411 112235667899999999999999999999988765322 12345666666
Q ss_pred HhhcCCCCCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHH-HcC-CccEEeecCcCcchhHHHHHhhcccCCcceec
Q 019214 84 CKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQ-KKG-WKPALVCADTFRAGAFDQLKQNATKAKIPFYG 161 (344)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~ii~ivG~~GvGKTTl~~~La~~l~-~~g-~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~ 161 (344)
.+.+......... ..++.+++|+||+||||||++.+|+..+. ++| ++|++|++|+||.++++++..|+...++++..
T Consensus 240 ~~~l~~~~~~~~~-~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~ 318 (484)
T PRK06995 240 AKNLPVLDSEDAL-LDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHA 318 (484)
T ss_pred HHHHhhccCcccc-ccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeec
Confidence 6665432111111 12347999999999999999999999885 556 58999999999999999999999999998765
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH-HHHHHhccC
Q 019214 162 SYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD-QAQAFKQSV 240 (344)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~-~~~~~~~~~ 240 (344)
.....+... .+.. ..++++++|||+|+.+.+....+.+..+.....+...++|+|++.+..... ....|. ..
T Consensus 319 ~~~~~Dl~~----aL~~--L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~~f~-~~ 391 (484)
T PRK06995 319 VKDAADLRL----ALSE--LRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVVQAYR-GP 391 (484)
T ss_pred cCCchhHHH----HHHh--ccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHHHHhc-cC
Confidence 444433222 2222 347899999999998776555444544444434667899999987755444 455554 45
Q ss_pred CcCEEEeecCCCCCChhhHHHHHHHhCCCeEEEecCCCC-CcCcCCChHHHHHHHhCCC
Q 019214 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMG 298 (344)
Q Consensus 241 ~~~~lVinK~D~~~~~~~~~~~~~~~~~pv~~~~~g~~~-~~l~~~~~~~~is~~~g~g 298 (344)
.+.++|+||+|++...|.+++....+++||.|+++||++ +|+.++++..++..+++.+
T Consensus 392 ~~~g~IlTKlDet~~~G~~l~i~~~~~lPI~yvt~GQ~VPeDL~~a~~~~lv~~ll~~~ 450 (484)
T PRK06995 392 GLAGCILTKLDEAASLGGALDVVIRYKLPLHYVSNGQRVPEDLHLANKKFLLHRAFCAP 450 (484)
T ss_pred CCCEEEEeCCCCcccchHHHHHHHHHCCCeEEEecCCCChhhhccCCHHHHHHHHhcCc
Confidence 678999999999999999999999999999999999999 7999999999999998765
No 21
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=1.1e-30 Score=245.14 Aligned_cols=253 Identities=21% Similarity=0.300 Sum_probs=195.1
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcccccccCCChHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcC
Q 019214 30 ECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGL 109 (344)
Q Consensus 30 ~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~ii~ivG~ 109 (344)
|.-..+...|...|++..++..+++.+...... .+. ....+++...+...+...... ...-.++.+++|+||
T Consensus 74 p~~~~l~~~L~~~g~~~~l~~~l~~~~~~~~~~------~~~-~~~~~~~~~~l~~~l~~~~~~-~~~~~~g~ii~lvGp 145 (374)
T PRK14722 74 PVHGALTKYLFAAGFSAQLVRMIVDNLPEGEGY------DTL-DAAADWAQSVLAANLPVLDSE-DALMERGGVFALMGP 145 (374)
T ss_pred cHHHHHHHHHHHCCCCHHHHHHHHHhhhhhccc------CCH-HHHHHHHHHHHHhcchhhcCC-CccccCCcEEEEECC
Confidence 444889999999999999999999987553111 111 223355555555555432211 111123478999999
Q ss_pred CCCCHHHHHHHHHHHHH-HcC-CccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHhCCCCEE
Q 019214 110 QGSGKTTTCTKYAYYHQ-KKG-WKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLI 187 (344)
Q Consensus 110 ~GvGKTTl~~~La~~l~-~~g-~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~d~v 187 (344)
+||||||++.+|+..+. +.| ++|++++.|+||.++++++..|+...++++.......+... .+..+ .++|++
T Consensus 146 tGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~----~l~~l--~~~DlV 219 (374)
T PRK14722 146 TGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQL----ALAEL--RNKHMV 219 (374)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHH----HHHHh--cCCCEE
Confidence 99999999999999875 456 68999999999999999999999999999877666555432 23333 378999
Q ss_pred EEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHH-HHHHHHhccC--------CcCEEEeecCCCCCChhh
Q 019214 188 IVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF-DQAQAFKQSV--------SVGAVIVTKMDGHAKGGG 258 (344)
Q Consensus 188 lIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~-~~~~~~~~~~--------~~~~lVinK~D~~~~~~~ 258 (344)
+|||||+.+.+....+++..+.....++..++|++++.+.+.. +.+..|.... .+.++|+||+|++.+.|.
T Consensus 220 LIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~~~G~ 299 (374)
T PRK14722 220 LIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASNLGG 299 (374)
T ss_pred EEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCCCccH
Confidence 9999999987777777776665555677899999999875554 4556676432 468999999999999999
Q ss_pred HHHHHHHhCCCeEEEecCCCCC-cCcCCChHHHHHHHhC
Q 019214 259 ALSAVAATKSPVIFIGTGEHMD-EFEVFDVKPFVSRLLG 296 (344)
Q Consensus 259 ~~~~~~~~~~pv~~~~~g~~~~-~l~~~~~~~~is~~~g 296 (344)
+++.+..+++|+.|+++||+++ ++..+++..++....+
T Consensus 300 ~l~~~~~~~lPi~yvt~Gq~VPedl~~a~~~~l~~~~~~ 338 (374)
T PRK14722 300 VLDTVIRYKLPVHYVSTGQKVPENLYVATKKFLLKSAFC 338 (374)
T ss_pred HHHHHHHHCcCeEEEecCCCCCcccccCCHHHHHHHHhc
Confidence 9999999999999999999996 7999999988887775
No 22
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.97 E-value=1.1e-29 Score=229.72 Aligned_cols=258 Identities=19% Similarity=0.352 Sum_probs=202.1
Q ss_pred hhhHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcccccccCCChHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEEE
Q 019214 26 KVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIM 105 (344)
Q Consensus 26 ~~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~ii~ 105 (344)
+..++++++++..|.++|++.+++.++.+..... .+.... . ...+.+.+.+.+...+.... .. ..++.+++
T Consensus 9 ~~~~~~~~~~~~~l~~~dv~~~~~~~l~~~~~i~--f~~~~~--~-~~~vl~~v~~~l~~~~~~~~---~~-~~~~~~i~ 79 (270)
T PRK06731 9 ESVPFIIQKVIRMLEQNDVEQYFIHAYAEKLKVK--FENATM--I-TEEVIEYILEDMSSHFNTEN---VF-EKEVQTIA 79 (270)
T ss_pred hcccHHHHHHHHHHHHcCCCHHHHHHHhhcceEE--ecCCCc--c-ccHHHHHHhcccEEeeCCcc---cc-cCCCCEEE
Confidence 3456778999999999999999999997754322 111110 1 11222223333333332111 11 23457899
Q ss_pred EEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh-CCC
Q 019214 106 FVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK-ENC 184 (344)
Q Consensus 106 ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~-~~~ 184 (344)
++|++|+||||++..++..+...|.+++++++|++|.++++++..++...+++++... ++.. +.+.++.+.. .++
T Consensus 80 ~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~---~~~~-l~~~l~~l~~~~~~ 155 (270)
T PRK06731 80 LIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR---DEAA-MTRALTYFKEEARV 155 (270)
T ss_pred EECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecC---CHHH-HHHHHHHHHhcCCC
Confidence 9999999999999999999988899999999999999999999999999898876532 3333 3455666643 479
Q ss_pred CEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc-hhHHHHHHHHhccCCcCEEEeecCCCCCChhhHHHHH
Q 019214 185 DLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG-QAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGALSAV 263 (344)
Q Consensus 185 d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~-~~~~~~~~~~~~~~~~~~lVinK~D~~~~~~~~~~~~ 263 (344)
|++||||||..+.+...++++..+.....++.+++|++++.. .+..+.+..|.. ..+.++|+||.|++.++|.+++..
T Consensus 156 D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f~~-~~~~~~I~TKlDet~~~G~~l~~~ 234 (270)
T PRK06731 156 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKD-IHIDGIVFTKFDETASSGELLKIP 234 (270)
T ss_pred CEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHHhCC-CCCCEEEEEeecCCCCccHHHHHH
Confidence 999999999998888888888888877788999999999865 577788888876 788999999999999999999999
Q ss_pred HHhCCCeEEEecCCCCC-cCcCCChHHHHHHHhCC
Q 019214 264 AATKSPVIFIGTGEHMD-EFEVFDVKPFVSRLLGM 297 (344)
Q Consensus 264 ~~~~~pv~~~~~g~~~~-~l~~~~~~~~is~~~g~ 297 (344)
..+++|+.|+++||+++ |+..+++..++..++|.
T Consensus 235 ~~~~~Pi~~it~Gq~vp~di~~a~~~~l~~~~~~~ 269 (270)
T PRK06731 235 AVSSAPIVLMTDGQDVKKNIHIATAEHLAKQMLQT 269 (270)
T ss_pred HHHCcCEEEEeCCCCCCcchhhCCHHHHHHHHhcC
Confidence 99999999999999996 89999999988888764
No 23
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.97 E-value=3.3e-29 Score=238.56 Aligned_cols=251 Identities=19% Similarity=0.246 Sum_probs=195.4
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcccccccCCChHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEc
Q 019214 29 NECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVG 108 (344)
Q Consensus 29 ~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~ii~ivG 108 (344)
.|....++..|..+|++.+++..+++.+....... ...+.+...+.+.+......... .++.+++++|
T Consensus 131 ~p~~~~~~~~L~~~~v~~~la~~l~~~~~~~~~~~----------~~~~~~~~~l~~~l~~~~~~~~~--~~g~vi~lvG 198 (420)
T PRK14721 131 DPGGMKVLRTLLSAGFSPLLSRHLLEKLPADRDFE----------QSLKKTISLLTLNLRTIGGDEII--EQGGVYALIG 198 (420)
T ss_pred CcHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhh----------hHHHHHHHHHHHHHHhcCCcccc--CCCcEEEEEC
Confidence 34458899999999999999999999887653221 12244555555444321111111 2447999999
Q ss_pred CCCCCHHHHHHHHHHHHH-Hc-CCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHhCCCCE
Q 019214 109 LQGSGKTTTCTKYAYYHQ-KK-GWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDL 186 (344)
Q Consensus 109 ~~GvGKTTl~~~La~~l~-~~-g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~d~ 186 (344)
++||||||++++||..+. .. +.+++++..|+||.++.+|+..++...++++.......+. ...+..+ .++|+
T Consensus 199 pnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl----~~al~~l--~~~d~ 272 (420)
T PRK14721 199 PTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADL----QLMLHEL--RGKHM 272 (420)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHH----HHHHHHh--cCCCE
Confidence 999999999999998764 33 4789999999999999999999999999998765443332 2233333 48999
Q ss_pred EEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHH-HHHHHHhccCCcCEEEeecCCCCCChhhHHHHHHH
Q 019214 187 IIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF-DQAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVAA 265 (344)
Q Consensus 187 vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~-~~~~~~~~~~~~~~lVinK~D~~~~~~~~~~~~~~ 265 (344)
++|||+|+.+.+...++++..+.....++..++|++++.+.+.. +....|. ..++.++|+||+|++.++|.+++.+..
T Consensus 273 VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~-~~~~~~~I~TKlDEt~~~G~~l~~~~~ 351 (420)
T PRK14721 273 VLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQ-GHGIHGCIITKVDEAASLGIALDAVIR 351 (420)
T ss_pred EEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhc-CCCCCEEEEEeeeCCCCccHHHHHHHH
Confidence 99999999988777778887776555677899999999775444 4455554 578899999999999999999999999
Q ss_pred hCCCeEEEecCCCC-CcCcCCChHHHHHHHhCCC
Q 019214 266 TKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMG 298 (344)
Q Consensus 266 ~~~pv~~~~~g~~~-~~l~~~~~~~~is~~~g~g 298 (344)
+++|+.|+++||++ +|+.++++..++..+++.+
T Consensus 352 ~~lPi~yvt~Gq~VP~Dl~~a~~~~lv~~ll~~~ 385 (420)
T PRK14721 352 RKLVLHYVTNGQKVPEDLHEANSRYLLHRIFKPS 385 (420)
T ss_pred hCCCEEEEECCCCchhhhhhCCHHHHHHHHhcCc
Confidence 99999999999999 5899999999999988754
No 24
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.97 E-value=4.5e-28 Score=233.55 Aligned_cols=252 Identities=21% Similarity=0.271 Sum_probs=191.7
Q ss_pred cChhhhHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcccccccCCChHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCe
Q 019214 23 IDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPS 102 (344)
Q Consensus 23 ~~~~~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~ 102 (344)
|++..-+|.-..+.+.|.+.|++..++..+++.+...... ......+...|.+.+.-..... .. .+.
T Consensus 285 ~~~~~~~P~~~~l~~~L~~~Gvs~~la~~L~~~l~~~~~~----------~~~~~~l~~~L~~~l~v~~~~~-l~--~G~ 351 (559)
T PRK12727 285 DERLRGSPVRAQALELMDDYGFDAGLTRDVAMQIPADTEL----------HRGRGLMLGLLSKRLPVAPVDP-LE--RGG 351 (559)
T ss_pred hhhhccChHHHHHHHHHHHCCCCHHHHHHHHHhhhcccch----------hhHHHHHHHHHHHhcCcCcccc-cc--CCC
Confidence 4333334566788999999999999999999887654211 1223667777888775433221 22 347
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHc--CCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKK--GWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~--g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
+++|+|++|+||||++.+|+..+... |++|++++.|+||.++.+++..++...++++...... ..+...++.+
T Consensus 352 vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~----~~L~~aL~~l- 426 (559)
T PRK12727 352 VIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSA----ESLLDLLERL- 426 (559)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcH----HHHHHHHHHh-
Confidence 89999999999999999999988764 5799999999999999999999999888877653322 2223344444
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc-hhHHHHHHHHhccCCcCEEEeecCCCCCChhhH
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG-QAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGA 259 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~-~~~~~~~~~~~~~~~~~~lVinK~D~~~~~~~~ 259 (344)
.++|+|||||||+...+....+++..+.... ....++|++++.+ .+..+....|.. ..+.++|+||+|++.+.|..
T Consensus 427 -~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAtss~~Dl~eii~~f~~-~~~~gvILTKlDEt~~lG~a 503 (559)
T PRK12727 427 -RDYKLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANAHFSDLDEVVRRFAH-AKPQGVVLTKLDETGRFGSA 503 (559)
T ss_pred -ccCCEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCCChhHHHHHHHHHHh-hCCeEEEEecCcCccchhHH
Confidence 3799999999999877766666665544332 3467888888765 444556666654 46789999999999999999
Q ss_pred HHHHHHhCCCeEEEecCCCC-CcCcCCChHHHHHHHh
Q 019214 260 LSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLL 295 (344)
Q Consensus 260 ~~~~~~~~~pv~~~~~g~~~-~~l~~~~~~~~is~~~ 295 (344)
++.+..+++||.|+++||++ +|+.++++..+++.+.
T Consensus 504 Lsv~~~~~LPI~yvt~GQ~VPeDL~~A~~~~Lv~r~~ 540 (559)
T PRK12727 504 LSVVVDHQMPITWVTDGQRVPDDLHRANAASLVLRLE 540 (559)
T ss_pred HHHHHHhCCCEEEEeCCCCchhhhhcCCHHHHHHHHH
Confidence 99999999999999999999 5899999988887654
No 25
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=99.93 E-value=3.6e-24 Score=183.08 Aligned_cols=172 Identities=45% Similarity=0.720 Sum_probs=148.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHhC
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 182 (344)
+++++|+||+||||++.+++..+...|++|+++++|++|++..+++..+....+++++......++.....+.+......
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAREE 81 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 68899999999999999999999999999999999999999999999999888988877666677777777777777677
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHHHHHHHhccCCcCEEEeecCCCCCChhhHHHH
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGALSA 262 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~~~~~~~~~~~~~~lVinK~D~~~~~~~~~~~ 262 (344)
++|+++|||||....+.....++..+.....++.+++|+++..+.+..+.+..+.+..++.++|+||+|...+.|..++.
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~~~~~~~~~viltk~D~~~~~g~~~~~ 161 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAFNEALGITGVILTKLDGDARGGAALSI 161 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHhhCCCCEEEEECCcCCCCcchhhhh
Confidence 99999999999976666677777666666668999999999877666677777765566789999999999999999999
Q ss_pred HHHhCCCeEEEe
Q 019214 263 VAATKSPVIFIG 274 (344)
Q Consensus 263 ~~~~~~pv~~~~ 274 (344)
...+++|+.|++
T Consensus 162 ~~~~~~p~~~~~ 173 (173)
T cd03115 162 RAVTGKPIKFIG 173 (173)
T ss_pred HHHHCcCeEeeC
Confidence 999999999974
No 26
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.89 E-value=3.8e-23 Score=194.83 Aligned_cols=227 Identities=19% Similarity=0.239 Sum_probs=159.3
Q ss_pred chHhHHHHHHHHHHHhhcccccChhhhHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcccccccCCChHHHHHHHHHH
Q 019214 2 VLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFN 81 (344)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 81 (344)
|+++++|+++..+++++ +.+...++..++..+|+.+..+........+. .+.+..
T Consensus 145 A~~~l~G~ls~~i~~lr--------------~~li~~~a~vEa~IDfpeedi~~~~~~~i~~~-----------l~~~~~ 199 (454)
T COG0486 145 ALRQLQGALSQLINELR--------------EALLELLAQVEANIDFPEEDIEELVLEKIREK-----------LEELIA 199 (454)
T ss_pred HHHHcCCcHHHHHHHHH--------------HHHHHHHHHheEeCCCCcccccchhHHHHHHH-----------HHHHHH
Confidence 56677778877777777 67888888888888888874333222211111 155778
Q ss_pred HHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceec
Q 019214 82 ELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYG 161 (344)
Q Consensus 82 ~l~~~l~~~~~~~~~~~~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~ 161 (344)
++.+++.....+..+..| ..++++|+||||||||+|+|+ +++.+||+. .+++||+-+....
T Consensus 200 ~l~~ll~~~~~g~ilr~G--~kvvIiG~PNvGKSSLLNaL~------~~d~AIVTd-----------I~GTTRDviee~i 260 (454)
T COG0486 200 ELDELLATAKQGKILREG--LKVVIIGRPNVGKSSLLNALL------GRDRAIVTD-----------IAGTTRDVIEEDI 260 (454)
T ss_pred HHHHHHHhhhhhhhhhcC--ceEEEECCCCCcHHHHHHHHh------cCCceEecC-----------CCCCccceEEEEE
Confidence 888888877766555544 679999999999999999999 999999999 8899998886544
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHH---HHhhhhcCCcEEEEEEcCCcc--hhHHHHHHHH
Q 019214 162 SYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEM---RQVSEATNPDLVIFVMDSSIG--QAAFDQAQAF 236 (344)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l---~~~~~~~~~d~illvvda~~~--~~~~~~~~~~ 236 (344)
... ++.+.++||||+..++ +.++.+ ++......+|.+++|+|++.+ ........ .
T Consensus 261 ~i~------------------G~pv~l~DTAGiRet~-d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~ 320 (454)
T COG0486 261 NLN------------------GIPVRLVDTAGIRETD-DVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-L 320 (454)
T ss_pred EEC------------------CEEEEEEecCCcccCc-cHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-h
Confidence 332 8899999999998765 344443 344455689999999999985 22222333 2
Q ss_pred hccCCcCEEEeecCCCCCChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 237 KQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 237 ~~~~~~~~lVinK~D~~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
.....+..+|+||.|+....... .+ ......+.+.+|+++|+| ++.|.++|.+.+.
T Consensus 321 ~~~~~~~i~v~NK~DL~~~~~~~------------------~~-~~~~~~~~i~iSa~t~~G-l~~L~~~i~~~~~ 376 (454)
T COG0486 321 LPKKKPIIVVLNKADLVSKIELE------------------SE-KLANGDAIISISAKTGEG-LDALREAIKQLFG 376 (454)
T ss_pred cccCCCEEEEEechhcccccccc------------------hh-hccCCCceEEEEecCccC-HHHHHHHHHHHHh
Confidence 23334568999999997753110 00 112222456677888888 8888888887664
No 27
>COG1159 Era GTPase [General function prediction only]
Probab=99.86 E-value=1.5e-21 Score=174.50 Aligned_cols=188 Identities=24% Similarity=0.317 Sum_probs=137.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
+...|+++|+||||||||+|+|. |.++++++. ++.+||..+.-+. +.
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~------G~KisIvS~-----------k~QTTR~~I~GI~--t~-------------- 51 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALV------GQKISIVSP-----------KPQTTRNRIRGIV--TT-------------- 51 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHh------cCceEeecC-----------CcchhhhheeEEE--Ec--------------
Confidence 34679999999999999999999 999999999 7788887764322 21
Q ss_pred HhCCCCEEEEcCCCCCcchHHHHHHHHHhh--hhcCCcEEEEEEcCCcc--hhHHHHHHHHhccCCcCEEEeecCCCCCC
Q 019214 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVS--EATNPDLVIFVMDSSIG--QAAFDQAQAFKQSVSVGAVIVTKMDGHAK 255 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~--~~~~~d~illvvda~~~--~~~~~~~~~~~~~~~~~~lVinK~D~~~~ 255 (344)
+++.+|||||||++.+.+.+.+.|.... ....+|+++||+|+..+ ......+..++....+..+++||+|....
T Consensus 52 --~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~ 129 (298)
T COG1159 52 --DNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKP 129 (298)
T ss_pred --CCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCc
Confidence 2788999999999888777766664332 33478999999999875 33333455555422456899999999876
Q ss_pred hhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCC-------CchHHHHHHHhcCCc
Q 019214 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM-------DQQPELLQKLSEGNF 328 (344)
Q Consensus 256 ~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~-------~~~~~~~~~~~~~~~ 328 (344)
...++..... .....+|...+++|++.|.| ++.|.+.+.++++. +...+..+++.-.+.
T Consensus 130 ~~~l~~~~~~-------------~~~~~~f~~ivpiSA~~g~n-~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~aEi 195 (298)
T COG1159 130 KTVLLKLIAF-------------LKKLLPFKEIVPISALKGDN-VDTLLEIIKEYLPEGPWYYPEDQITDRPERFLAAEI 195 (298)
T ss_pred HHHHHHHHHH-------------HHhhCCcceEEEeeccccCC-HHHHHHHHHHhCCCCCCcCChhhccCChHHHHHHHH
Confidence 5432322221 12234666788899999999 99999999998864 334556677777777
Q ss_pred ChHHHHHh
Q 019214 329 TLRIMFSL 336 (344)
Q Consensus 329 ~~~~~~~~ 336 (344)
..+.++..
T Consensus 196 iREk~~~~ 203 (298)
T COG1159 196 IREKLLLL 203 (298)
T ss_pred HHHHHHHh
Confidence 77777665
No 28
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=99.82 E-value=4.8e-19 Score=162.63 Aligned_cols=150 Identities=29% Similarity=0.319 Sum_probs=116.8
Q ss_pred hhHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcccccccCCChHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEEEE
Q 019214 27 VLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMF 106 (344)
Q Consensus 27 ~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~ii~i 106 (344)
..++.++.++..|...|++.+++.++.+.+.... +...+...+.+.|.+.+......... ..++++++|
T Consensus 131 ~~~~~l~~l~~~L~~~gv~~~la~~L~~~l~~~~----------~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~vi~~ 199 (282)
T TIGR03499 131 QRDPEGAKLLERLLRAGVSPELARELLEKLPERA----------DAEDAWRWLREALEKMLPVKPEEDEI-LEQGGVIAL 199 (282)
T ss_pred ccCHHHHHHHHHHHHCCCCHHHHHHHHHHhhccC----------CHHHHHHHHHHHHHHHhccCCccccc-cCCCeEEEE
Confidence 4566779999999999999999999998876521 22345577888888888632222211 124579999
Q ss_pred EcCCCCCHHHHHHHHHHHHHHc-C-CccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHhCCC
Q 019214 107 VGLQGSGKTTTCTKYAYYHQKK-G-WKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENC 184 (344)
Q Consensus 107 vG~~GvGKTTl~~~La~~l~~~-g-~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 184 (344)
+||+||||||++.+|+.++... | ++|++|++|+||.++++++..|+...++++..... +. .+...+..+ .++
T Consensus 200 vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~---~~-~l~~~l~~~--~~~ 273 (282)
T TIGR03499 200 VGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARD---PK-ELRKALDRL--RDK 273 (282)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCC---HH-HHHHHHHHc--cCC
Confidence 9999999999999999999875 5 89999999999999999999999999998765332 22 234555555 369
Q ss_pred CEEEEcCCC
Q 019214 185 DLIIVDTSG 193 (344)
Q Consensus 185 d~vlIDT~G 193 (344)
|+|||||||
T Consensus 274 d~vliDt~G 282 (282)
T TIGR03499 274 DLILIDTAG 282 (282)
T ss_pred CEEEEeCCC
Confidence 999999998
No 29
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.79 E-value=1.1e-18 Score=164.45 Aligned_cols=157 Identities=23% Similarity=0.326 Sum_probs=117.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
.+|+++|+||||||||.|+|+ |++++||+. .++.|++.+.-... .
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~------g~r~AIV~D-----------~pGvTRDr~y~~~~------------------~ 48 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLT------GRRIAIVSD-----------TPGVTRDRIYGDAE------------------W 48 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHh------CCeeeEeec-----------CCCCccCCccceeE------------------E
Confidence 579999999999999999999 999999998 77788877643221 1
Q ss_pred CCCCEEEEcCCCCCcch-HHHHHHHH--HhhhhcCCcEEEEEEcCCcc--hhHHHHHHHHhccCCcCEEEeecCCCCCCh
Q 019214 182 ENCDLIIVDTSGRHKQE-AALFEEMR--QVSEATNPDLVIFVMDSSIG--QAAFDQAQAFKQSVSVGAVIVTKMDGHAKG 256 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~-~~~~~~l~--~~~~~~~~d~illvvda~~~--~~~~~~~~~~~~~~~~~~lVinK~D~~~~~ 256 (344)
.+..+.+|||+|+.... ..+...++ ...+...+|.++||+|+..| ......+..++....+.++|+||+|.....
T Consensus 49 ~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e 128 (444)
T COG1160 49 LGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAE 128 (444)
T ss_pred cCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhh
Confidence 26779999999998654 45666664 34455689999999999987 344456666765557789999999986332
Q ss_pred hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 257 ~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
......+.+| +.+.+.+|+..|.| +.+|++++.+.++
T Consensus 129 -~~~~efyslG-----------------~g~~~~ISA~Hg~G-i~dLld~v~~~l~ 165 (444)
T COG1160 129 -ELAYEFYSLG-----------------FGEPVPISAEHGRG-IGDLLDAVLELLP 165 (444)
T ss_pred -hhHHHHHhcC-----------------CCCceEeehhhccC-HHHHHHHHHhhcC
Confidence 2222222211 33456789999999 9999999999974
No 30
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.77 E-value=6.4e-18 Score=157.17 Aligned_cols=193 Identities=19% Similarity=0.200 Sum_probs=124.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcc---hh----HHHHHhhcccCCcceeccC---CCCCH
Q 019214 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA---GA----FDQLKQNATKAKIPFYGSY---TESDP 168 (344)
Q Consensus 99 ~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~---~~----~~~l~~~~~~~~v~~~~~~---~~~~~ 168 (344)
+++.+|.|+|+||+||||++..|+..+...|++|++++.||..+ |+ +.++.......++-+.... .....
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~~ 133 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGV 133 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccch
Confidence 45689999999999999999999999999999999999998543 22 2333333333332222211 12234
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHHHHHHHhccCCcCEEEee
Q 019214 169 VRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVT 248 (344)
Q Consensus 169 ~~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~~~~~~~~~~~~~~lVin 248 (344)
.....+.+..+...+||++||||+|........ ...+|.+++|+++..+.+.........+.. +.+|+|
T Consensus 134 a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~i---------~~~aD~vlvv~~p~~gd~iq~~k~gi~E~a--DIiVVN 202 (332)
T PRK09435 134 ARKTRETMLLCEAAGYDVILVETVGVGQSETAV---------AGMVDFFLLLQLPGAGDELQGIKKGIMELA--DLIVIN 202 (332)
T ss_pred HHHHHHHHHHHhccCCCEEEEECCCCccchhHH---------HHhCCEEEEEecCCchHHHHHHHhhhhhhh--heEEee
Confidence 566677777777789999999999998654331 224899999998766655433332122222 478999
Q ss_pred cCCCCCChhh--HHHHHH-HhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 249 KMDGHAKGGG--ALSAVA-ATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 249 K~D~~~~~~~--~~~~~~-~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
|+|.....+. ....+. .... .. +..+ .+..|.+++|+.+|+| +++|++.|.+.+
T Consensus 203 KaDl~~~~~a~~~~~el~~~L~l----~~--~~~~--~w~~pVi~vSA~~g~G-IdeL~~~I~~~~ 259 (332)
T PRK09435 203 KADGDNKTAARRAAAEYRSALRL----LR--PKDP--GWQPPVLTCSALEGEG-IDEIWQAIEDHR 259 (332)
T ss_pred hhcccchhHHHHHHHHHHHHHhc----cc--cccc--CCCCCEEEEECCCCCC-HHHHHHHHHHHH
Confidence 9998754321 111111 1110 00 0000 0113567788899999 999999998865
No 31
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.76 E-value=2.4e-17 Score=147.33 Aligned_cols=196 Identities=20% Similarity=0.225 Sum_probs=132.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCc---chh----HHHHHhhcccCCcceeccCCCCC---
Q 019214 98 KGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR---AGA----FDQLKQNATKAKIPFYGSYTESD--- 167 (344)
Q Consensus 98 ~~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~---~~~----~~~l~~~~~~~~v~~~~~~~~~~--- 167 (344)
.+++.+|.|+|+||+||||++-+|...|.+.|++|+|+..||.. .|+ .-++...+...++-+....+...
T Consensus 48 tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGG 127 (323)
T COG1703 48 TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGG 127 (323)
T ss_pred CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchh
Confidence 46778999999999999999999999999999999999999843 333 33455555556665544444333
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHHHHHHHhccCCcCEEEe
Q 019214 168 PVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIV 247 (344)
Q Consensus 168 ~~~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~~~~~~~~~~~~~~lVi 247 (344)
......+.+.-+...+||+|||.|.|..+++.+.. ..+|.+++|.-|..|.+..-....+.+.. +.+|+
T Consensus 128 lS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~---------~~aDt~~~v~~pg~GD~~Q~iK~GimEia--Di~vI 196 (323)
T COG1703 128 LSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIA---------NMADTFLVVMIPGAGDDLQGIKAGIMEIA--DIIVI 196 (323)
T ss_pred hhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHh---------hhcceEEEEecCCCCcHHHHHHhhhhhhh--heeeE
Confidence 23345566666677799999999999988765442 23799999998888876655544444433 68899
Q ss_pred ecCCCCCChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 248 TKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 248 nK~D~~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
||.|.........+....... .. +.-.+-.+..|.+-+|+..|+| +++||+.|.+..
T Consensus 197 NKaD~~~A~~a~r~l~~al~~----~~--~~~~~~~W~ppv~~t~A~~g~G-i~~L~~ai~~h~ 253 (323)
T COG1703 197 NKADRKGAEKAARELRSALDL----LR--EVWRENGWRPPVVTTSALEGEG-IDELWDAIEDHR 253 (323)
T ss_pred eccChhhHHHHHHHHHHHHHh----hc--ccccccCCCCceeEeeeccCCC-HHHHHHHHHHHH
Confidence 999953321111111111110 00 1112223444667789999999 999999998865
No 32
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.75 E-value=1.9e-18 Score=152.49 Aligned_cols=192 Identities=20% Similarity=0.216 Sum_probs=118.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcC---cchh----HHHHHhhcccCCcceeccCCCCCHH--
Q 019214 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF---RAGA----FDQLKQNATKAKIPFYGSYTESDPV-- 169 (344)
Q Consensus 99 ~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~---~~~~----~~~l~~~~~~~~v~~~~~~~~~~~~-- 169 (344)
++..+|.|+||||+||||++..|+..+...|++|+|+..||. ..|+ +-++...+.-.++-+....+....-
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence 456899999999999999999999999999999999999984 3333 3445556666677666555555533
Q ss_pred -HHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHHHHHHHhccCCcCEEEee
Q 019214 170 -RIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVT 248 (344)
Q Consensus 170 -~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~~~~~~~~~~~~~~lVin 248 (344)
....+++.-+...+||+|||.|.|..+.+.+. ...+|.+++|+.|..|.+..-....+.+. .+++|+|
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I---------~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi--aDi~vVN 175 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQSEVDI---------ADMADTVVLVLVPGLGDEIQAIKAGIMEI--ADIFVVN 175 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSSTHHHHH---------HTTSSEEEEEEESSTCCCCCTB-TTHHHH---SEEEEE
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCccHHHH---------HHhcCeEEEEecCCCccHHHHHhhhhhhh--ccEEEEe
Confidence 33455666666779999999999998865433 23479999999998875543222222222 2689999
Q ss_pred cCCCCCChh--hHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 249 KMDGHAKGG--GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 249 K~D~~~~~~--~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
|.|...... ..+....... ... .-.+..|.+.+|+..|+| +++|++.|.+...
T Consensus 176 KaD~~gA~~~~~~l~~~l~l~---------~~~-~~~W~ppV~~tsA~~~~G-i~eL~~~i~~~~~ 230 (266)
T PF03308_consen 176 KADRPGADRTVRDLRSMLHLL---------RER-EDGWRPPVLKTSALEGEG-IDELWEAIDEHRD 230 (266)
T ss_dssp --SHHHHHHHHHHHHHHHHHC---------STS-CTSB--EEEEEBTTTTBS-HHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHhhc---------ccc-ccCCCCCEEEEEeCCCCC-HHHHHHHHHHHHH
Confidence 999532211 1112222111 110 111223566678889999 9999999998653
No 33
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.72 E-value=2.5e-17 Score=155.23 Aligned_cols=191 Identities=17% Similarity=0.279 Sum_probs=126.9
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCC
Q 019214 77 QAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAK 156 (344)
Q Consensus 77 ~~l~~~l~~~l~~~~~~~~~~~~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~ 156 (344)
..|.+++.+.++............+..++++|+|||||||++|+|. |...+|++. .++++++.
T Consensus 154 ~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~il------geeR~Iv~~-----------~aGTTRD~ 216 (444)
T COG1160 154 GDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAIL------GEERVIVSD-----------IAGTTRDS 216 (444)
T ss_pred HHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHhc------cCceEEecC-----------CCCccccc
Confidence 3455666666531111111111246789999999999999999999 999999999 88888888
Q ss_pred cceeccCCCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCcchH-----HHHHHHHHhhhhcCCcEEEEEEcCCcchhH--
Q 019214 157 IPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEA-----ALFEEMRQVSEATNPDLVIFVMDSSIGQAA-- 229 (344)
Q Consensus 157 v~~~~~~~~~~~~~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~-----~~~~~l~~~~~~~~~d~illvvda~~~~~~-- 229 (344)
+...... ++..|.+|||||+..... +.+.-.+.+.+...+|.+++|+|++.+...
T Consensus 217 I~~~~e~------------------~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD 278 (444)
T COG1160 217 IDIEFER------------------DGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQD 278 (444)
T ss_pred eeeeEEE------------------CCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHH
Confidence 7654322 267789999999854321 112223445555578999999999987433
Q ss_pred HHHHHHHhccCCcCEEEeecCCCCCChhhHHHHHH-HhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHH
Q 019214 230 FDQAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVA-ATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIH 308 (344)
Q Consensus 230 ~~~~~~~~~~~~~~~lVinK~D~~~~~~~~~~~~~-~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~ 308 (344)
...+....+......+|+||||.........+... .. ++.-.+..+.+.+++|+++|.| +..|++.+.
T Consensus 279 ~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i----------~~~l~~l~~a~i~~iSA~~~~~-i~~l~~~i~ 347 (444)
T COG1160 279 LRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKL----------RRKLPFLDFAPIVFISALTGQG-LDKLFEAIK 347 (444)
T ss_pred HHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHH----------HHHhccccCCeEEEEEecCCCC-hHHHHHHHH
Confidence 33444444445566889999998765222222221 10 1111234567888999999999 999999998
Q ss_pred hhCCC
Q 019214 309 EVVPM 313 (344)
Q Consensus 309 ~~~~~ 313 (344)
+....
T Consensus 348 ~~~~~ 352 (444)
T COG1160 348 EIYEC 352 (444)
T ss_pred HHHHH
Confidence 87754
No 34
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.71 E-value=4e-17 Score=149.40 Aligned_cols=161 Identities=22% Similarity=0.222 Sum_probs=104.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHhC
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 182 (344)
.|+++|+||||||||+|+|. |.++++++. .+.+++..+.... .. .
T Consensus 2 ~V~liG~pnvGKSTLln~L~------~~~~~~vs~-----------~~~TTr~~i~~i~--~~----------------~ 46 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLH------GQKISITSP-----------KAQTTRNRISGIH--TT----------------G 46 (270)
T ss_pred EEEEECCCCCCHHHHHHHHh------CCcEeecCC-----------CCCcccCcEEEEE--Ec----------------C
Confidence 58999999999999999999 999988887 5555554332111 11 1
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHH--hhhhcCCcEEEEEEcCCcchhH-HHHHHHHhccCCcCEEEeecCCCCCChhhH
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQ--VSEATNPDLVIFVMDSSIGQAA-FDQAQAFKQSVSVGAVIVTKMDGHAKGGGA 259 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~--~~~~~~~d~illvvda~~~~~~-~~~~~~~~~~~~~~~lVinK~D~~~~~~~~ 259 (344)
++.++|+||||.......+.+.+.. ......+|.+++|+|++..... ......+.....+..+|+||+|..... ..
T Consensus 47 ~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~~~i~~~l~~~~~p~ilV~NK~Dl~~~~-~~ 125 (270)
T TIGR00436 47 ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDGEFVLTKLQNLKRPVVLTRNKLDNKFKD-KL 125 (270)
T ss_pred CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchHHHHHHHHHhcCCCEEEEEECeeCCCHH-HH
Confidence 5678999999986543333333321 1223478999999999865322 222333333334568899999986432 22
Q ss_pred HHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCC
Q 019214 260 LSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (344)
Q Consensus 260 ~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~ 313 (344)
....... .....+.+.+.+|+..|.| ++.|.+.+.+.++.
T Consensus 126 ~~~~~~~-------------~~~~~~~~v~~iSA~~g~g-i~~L~~~l~~~l~~ 165 (270)
T TIGR00436 126 LPLIDKY-------------AILEDFKDIVPISALTGDN-TSFLAAFIEVHLPE 165 (270)
T ss_pred HHHHHHH-------------HhhcCCCceEEEecCCCCC-HHHHHHHHHHhCCC
Confidence 2222110 1112234567899999999 99999999998764
No 35
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.71 E-value=1.5e-17 Score=162.21 Aligned_cols=223 Identities=18% Similarity=0.192 Sum_probs=128.3
Q ss_pred chHhHHHHHHHHHHHhhcccccChhhhHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcccccccCCChHHHHHHHHHH
Q 019214 2 VLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFN 81 (344)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 81 (344)
|+++|+|.++..+..++ +++.+.+...++..+++.+........ .+ ..-...+..
T Consensus 143 al~~l~G~l~~~~~~~r--------------~~l~~~~a~iea~iDf~ee~~~~~~~~----~i-------~~~i~~l~~ 197 (449)
T PRK05291 143 ALRQLQGALSKLINELR--------------EELLELLALVEAAIDFPEEDIEFLSDE----KI-------LEKLEELIA 197 (449)
T ss_pred HHHhcCcHHHHHHHHHH--------------HHHHHHHHHheEEccCCCCCcccccHH----HH-------HHHHHHHHH
Confidence 56677777777777776 456666666665555555321111000 00 011144555
Q ss_pred HHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceec
Q 019214 82 ELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYG 161 (344)
Q Consensus 82 ~l~~~l~~~~~~~~~~~~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~ 161 (344)
++.+++.......... .+..|+++|.|||||||++|+|. |.++++++. .++++++......
T Consensus 198 ~l~~l~~~~~~~~~~~--~~~kV~ivG~~nvGKSSLln~L~------~~~~a~v~~-----------~~gtT~d~~~~~i 258 (449)
T PRK05291 198 ELEALLASARQGEILR--EGLKVVIAGRPNVGKSSLLNALL------GEERAIVTD-----------IAGTTRDVIEEHI 258 (449)
T ss_pred HHHHHHHHHHHHHHhh--cCCEEEEECCCCCCHHHHHHHHh------CCCCcccCC-----------CCCcccccEEEEE
Confidence 5655554433222222 23569999999999999999999 887777765 3333333222111
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHH--H-HHhhhhcCCcEEEEEEcCCcchhH--HHHHHHH
Q 019214 162 SYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEE--M-RQVSEATNPDLVIFVMDSSIGQAA--FDQAQAF 236 (344)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~--l-~~~~~~~~~d~illvvda~~~~~~--~~~~~~~ 236 (344)
.. .++.+.++||||..... ...+. + +.......+|.+++|+|++.+... ......
T Consensus 259 ~~------------------~g~~i~l~DT~G~~~~~-~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~- 318 (449)
T PRK05291 259 NL------------------DGIPLRLIDTAGIRETD-DEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE- 318 (449)
T ss_pred EE------------------CCeEEEEEeCCCCCCCc-cHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh-
Confidence 11 25678999999986533 22222 1 122334578999999999865322 122222
Q ss_pred hccCCcCEEEeecCCCCCChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 237 KQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 237 ~~~~~~~~lVinK~D~~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
....+..+|+||+|+....... . ....+.+.+|+++|+| ++.|.++|.+.+.
T Consensus 319 -~~~~piiiV~NK~DL~~~~~~~----~------------------~~~~~~i~iSAktg~G-I~~L~~~L~~~l~ 370 (449)
T PRK05291 319 -LKDKPVIVVLNKADLTGEIDLE----E------------------ENGKPVIRISAKTGEG-IDELREAIKELAF 370 (449)
T ss_pred -cCCCCcEEEEEhhhccccchhh----h------------------ccCCceEEEEeeCCCC-HHHHHHHHHHHHh
Confidence 1224568999999986432110 0 0112345678888888 8888888877653
No 36
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.71 E-value=1.7e-17 Score=139.92 Aligned_cols=180 Identities=20% Similarity=0.242 Sum_probs=134.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCC-C--CHHHHHHHHHHH
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTE-S--DPVRIAVEGVET 178 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~-~--~~~~~~~~~l~~ 178 (344)
..|.+.|||||||||++-++...|..+ +++++|..|.+.....+.+... .+.++....++ . .+.++...++.+
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~-~~~aVI~~Di~t~~Da~~l~~~---~g~~i~~v~TG~~CH~da~m~~~ai~~ 89 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDE-YKIAVITGDIYTKEDADRLRKL---PGEPIIGVETGKGCHLDASMNLEAIEE 89 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHHhh-CCeEEEeceeechhhHHHHHhC---CCCeeEEeccCCccCCcHHHHHHHHHH
Confidence 789999999999999999999999886 9999999999987777766653 45555555554 3 377788888888
Q ss_pred HHhC--CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHHH-HHHHhccCCcCEEEeecCCCCCC
Q 019214 179 FKKE--NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ-AQAFKQSVSVGAVIVTKMDGHAK 255 (344)
Q Consensus 179 ~~~~--~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~~-~~~~~~~~~~~~lVinK~D~~~~ 255 (344)
+... +.|++||.+.|..... ....+..+..++|+|.+.|.+.... ...+. ..+.+|+||.|+++.
T Consensus 90 l~~~~~~~Dll~iEs~GNL~~~---------~sp~L~d~~~v~VidvteGe~~P~K~gP~i~---~aDllVInK~DLa~~ 157 (202)
T COG0378 90 LVLDFPDLDLLFIESVGNLVCP---------FSPDLGDHLRVVVIDVTEGEDIPRKGGPGIF---KADLLVINKTDLAPY 157 (202)
T ss_pred HhhcCCcCCEEEEecCcceecc---------cCcchhhceEEEEEECCCCCCCcccCCCcee---EeeEEEEehHHhHHH
Confidence 8643 3699999999932211 0111223478999999998765443 11111 236899999999998
Q ss_pred hhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhh
Q 019214 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (344)
Q Consensus 256 ~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~ 310 (344)
.+..++.+. ++...+++..+.+++|.++|+| ++++++++...
T Consensus 158 v~~dlevm~------------~da~~~np~~~ii~~n~ktg~G-~~~~~~~i~~~ 199 (202)
T COG0378 158 VGADLEVMA------------RDAKEVNPEAPIIFTNLKTGEG-LDEWLRFIEPQ 199 (202)
T ss_pred hCccHHHHH------------HHHHHhCCCCCEEEEeCCCCcC-HHHHHHHHHhh
Confidence 888777665 4445567777889999999999 99999998764
No 37
>PRK00089 era GTPase Era; Reviewed
Probab=99.70 E-value=9.2e-17 Score=148.68 Aligned_cols=165 Identities=24% Similarity=0.288 Sum_probs=106.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
+...|+++|+|||||||++|+|. |.++++++..+ .+++..+......
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~------g~~~~~vs~~~-----------~tt~~~i~~i~~~---------------- 50 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALV------GQKISIVSPKP-----------QTTRHRIRGIVTE---------------- 50 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHh------CCceeecCCCC-----------CcccccEEEEEEc----------------
Confidence 34689999999999999999999 99999988743 3333332211110
Q ss_pred HhCCCCEEEEcCCCCCcchHHHHHHHHH--hhhhcCCcEEEEEEcCCcc--hhHHHHHHHHhccCCcCEEEeecCCCCCC
Q 019214 180 KKENCDLIIVDTSGRHKQEAALFEEMRQ--VSEATNPDLVIFVMDSSIG--QAAFDQAQAFKQSVSVGAVIVTKMDGHAK 255 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~~~~~~~l~~--~~~~~~~d~illvvda~~~--~~~~~~~~~~~~~~~~~~lVinK~D~~~~ 255 (344)
.+++++++||||.......+.+.+.. ......+|.+++|+|++.. .........+.....+..+|+||+|....
T Consensus 51 --~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~ 128 (292)
T PRK00089 51 --DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKD 128 (292)
T ss_pred --CCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCC
Confidence 15788999999987655333333321 1223468999999999863 22223333333323456889999999743
Q ss_pred hhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCC
Q 019214 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (344)
Q Consensus 256 ~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~ 313 (344)
........... .....+.+.+.+|+..|+| ++.|++.+.+.++.
T Consensus 129 ~~~l~~~~~~l-------------~~~~~~~~i~~iSA~~~~g-v~~L~~~L~~~l~~ 172 (292)
T PRK00089 129 KEELLPLLEEL-------------SELMDFAEIVPISALKGDN-VDELLDVIAKYLPE 172 (292)
T ss_pred HHHHHHHHHHH-------------HhhCCCCeEEEecCCCCCC-HHHHHHHHHHhCCC
Confidence 22222222211 1112244566789999999 99999999988753
No 38
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.68 E-value=1.6e-15 Score=140.77 Aligned_cols=195 Identities=20% Similarity=0.198 Sum_probs=118.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchh---H--H--HHHhhcccCCcceeccCCC---CCH
Q 019214 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA---F--D--QLKQNATKAKIPFYGSYTE---SDP 168 (344)
Q Consensus 99 ~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~---~--~--~l~~~~~~~~v~~~~~~~~---~~~ 168 (344)
+++.+|+|+|+||+||||++.+++..+...|++|++++.|++.+.. . + ++.......++.+...... ...
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRSMPTRGHLGGL 111 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeeecCccccccch
Confidence 3568999999999999999999999999999999999999876532 1 1 1222112223222221111 112
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHHHHHHHhccCCcCEEEee
Q 019214 169 VRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVT 248 (344)
Q Consensus 169 ~~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~~~~~~~~~~~~~~lVin 248 (344)
.....+.+..+...+||++||||+|..+..... ...+|.++++..+..+.+.......+.. .+..+|+|
T Consensus 112 ~~~~~~~~~~l~~~g~D~viidT~G~~~~e~~i---------~~~aD~i~vv~~~~~~~el~~~~~~l~~--~~~ivv~N 180 (300)
T TIGR00750 112 SQATRELILLLDAAGYDVIIVETVGVGQSEVDI---------ANMADTFVVVTIPGTGDDLQGIKAGLME--IADIYVVN 180 (300)
T ss_pred hHHHHHHHHHHHhCCCCEEEEeCCCCchhhhHH---------HHhhceEEEEecCCccHHHHHHHHHHhh--hccEEEEE
Confidence 233455566666779999999999987544221 1236788888766655544333333332 34588999
Q ss_pred cCCCCCChhhHH-HHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 249 KMDGHAKGGGAL-SAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 249 K~D~~~~~~~~~-~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
|+|......... .......+. .+ .++.. ....+.+.+|+.+|+| +++|+++|.+..
T Consensus 181 K~Dl~~~~~~~~~~~~~~~~l~--~l--~~~~~--~~~~~v~~iSA~~g~G-i~~L~~~i~~~~ 237 (300)
T TIGR00750 181 KADGEGATNVTIARLMLALALE--EI--RRRED--GWRPPVLTTSAVEGRG-IDELWDAIEEHK 237 (300)
T ss_pred cccccchhHHHHHHHHHHHHHh--hc--ccccc--CCCCCEEEEEccCCCC-HHHHHHHHHHHH
Confidence 999875432111 100000000 00 01100 1112457789999999 999999988864
No 39
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.66 E-value=2.5e-16 Score=131.02 Aligned_cols=150 Identities=23% Similarity=0.194 Sum_probs=91.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHhC
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 182 (344)
.|+++|.|||||||++|+|+ |.+..+-+. ++.+......... ..
T Consensus 2 ~ialvG~PNvGKStLfN~Lt------g~~~~v~n~------------pG~Tv~~~~g~~~------------------~~ 45 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALT------GAKQKVGNW------------PGTTVEKKEGIFK------------------LG 45 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHH------TTSEEEEES------------TTSSSEEEEEEEE------------------ET
T ss_pred EEEEECCCCCCHHHHHHHHH------CCCceecCC------------CCCCeeeeeEEEE------------------ec
Confidence 48999999999999999999 998654442 3333221110010 12
Q ss_pred CCCEEEEcCCCCCcchHHH-HHHH-HHhhhhcCCcEEEEEEcCCcchhHHHHHHHHhccCCcCEEEeecCCCCCChhhHH
Q 019214 183 NCDLIIVDTSGRHKQEAAL-FEEM-RQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGAL 260 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~-~~~l-~~~~~~~~~d~illvvda~~~~~~~~~~~~~~~~~~~~~lVinK~D~~~~~~~~~ 260 (344)
+..+.+||+||........ .+.+ +.......+|.+++|+|++.-.........+.+...|..+|+||+|++.+.|...
T Consensus 46 ~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~i 125 (156)
T PF02421_consen 46 DQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNLERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEI 125 (156)
T ss_dssp TEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGHHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE
T ss_pred CceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEE
Confidence 5778999999974432111 1122 2333345799999999998765555566666555556789999999977655322
Q ss_pred ---HHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHH
Q 019214 261 ---SAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKI 307 (344)
Q Consensus 261 ---~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i 307 (344)
.....++.|+..+ |+..|+| +++|.++|
T Consensus 126 d~~~Ls~~Lg~pvi~~------------------sa~~~~g-~~~L~~~I 156 (156)
T PF02421_consen 126 DAEKLSERLGVPVIPV------------------SARTGEG-IDELKDAI 156 (156)
T ss_dssp -HHHHHHHHTS-EEEE------------------BTTTTBT-HHHHHHHH
T ss_pred CHHHHHHHhCCCEEEE------------------EeCCCcC-HHHHHhhC
Confidence 3334456665555 4456777 77777664
No 40
>PRK15494 era GTPase Era; Provisional
Probab=99.62 E-value=2e-15 Score=142.33 Aligned_cols=184 Identities=20% Similarity=0.240 Sum_probs=112.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...|+++|.|||||||++++|. |.++.+++. ...+++.........
T Consensus 52 ~~kV~ivG~~nvGKSTLin~l~------~~k~~ivs~-----------k~~tTr~~~~~~~~~----------------- 97 (339)
T PRK15494 52 TVSVCIIGRPNSGKSTLLNRII------GEKLSIVTP-----------KVQTTRSIITGIITL----------------- 97 (339)
T ss_pred eeEEEEEcCCCCCHHHHHHHHh------CCceeeccC-----------CCCCccCcEEEEEEe-----------------
Confidence 3479999999999999999999 888888776 334443322111111
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHHHHH--hhhhcCCcEEEEEEcCCcchhHH--HHHHHHhccCCcCEEEeecCCCCCCh
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEEMRQ--VSEATNPDLVIFVMDSSIGQAAF--DQAQAFKQSVSVGAVIVTKMDGHAKG 256 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~l~~--~~~~~~~d~illvvda~~~~~~~--~~~~~~~~~~~~~~lVinK~D~~~~~ 256 (344)
.+..++|+||||.......+...+.. ......+|.+++|+|++.+.... .....+.....+..+|+||+|.....
T Consensus 98 -~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~~ 176 (339)
T PRK15494 98 -KDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESKY 176 (339)
T ss_pred -CCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCcccc
Confidence 25678999999985433233222221 12244789999999987652222 22333332223447889999985431
Q ss_pred -hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCC-------CchHHHHHHHhcCCc
Q 019214 257 -GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM-------DQQPELLQKLSEGNF 328 (344)
Q Consensus 257 -~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~-------~~~~~~~~~~~~~~~ 328 (344)
......+. ...++.+.+.+|+++|.| +++|++.|.+.++. +...+...++.-.++
T Consensus 177 ~~~~~~~l~----------------~~~~~~~i~~iSAktg~g-v~eL~~~L~~~l~~~~~~~~~~~~td~~~~~~~~ei 239 (339)
T PRK15494 177 LNDIKAFLT----------------ENHPDSLLFPISALSGKN-IDGLLEYITSKAKISPWLYAEDDITDLPMRFIAAEI 239 (339)
T ss_pred HHHHHHHHH----------------hcCCCcEEEEEeccCccC-HHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHH
Confidence 11111111 112234567789999999 99999999998753 333445555555555
Q ss_pred ChHHHHHh
Q 019214 329 TLRIMFSL 336 (344)
Q Consensus 329 ~~~~~~~~ 336 (344)
-.+.++..
T Consensus 240 iRe~~~~~ 247 (339)
T PRK15494 240 TREQLFLN 247 (339)
T ss_pred HHHHHHhh
Confidence 55555555
No 41
>PRK13768 GTPase; Provisional
Probab=99.62 E-value=3.5e-15 Score=135.00 Aligned_cols=211 Identities=19% Similarity=0.175 Sum_probs=111.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchh----HHHHHhhcc------cCCc-ceeccCCCCC-HH
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA----FDQLKQNAT------KAKI-PFYGSYTESD-PV 169 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~----~~~l~~~~~------~~~v-~~~~~~~~~~-~~ 169 (344)
+++++.|++||||||++.+++.++...|++|++|+.||..... .-.+..+.+ ..+. |-.......+ ..
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~~~~~~~~~~i~~~~~~~~v~~~~~l~p~~~~~~~~~~~~ 82 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEYLPYTPDFDVRDYVTAREIMKKYGLGPNGALIASVDLLL 82 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCccccCCCCCCcchhhheeHHHHHHHcCCCCchHHHHHHHHHH
Confidence 6789999999999999999999999999999999999853210 000111111 0000 0000000000 00
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCCcch--HHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH--HHHHHh-----ccC
Q 019214 170 RIAVEGVETFKKENCDLIIVDTSGRHKQE--AALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD--QAQAFK-----QSV 240 (344)
Q Consensus 170 ~~~~~~l~~~~~~~~d~vlIDT~G~~~~~--~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~--~~~~~~-----~~~ 240 (344)
.........+...+.|++++||||..... ......+........++.+++|+|++.+....+ ....+. ...
T Consensus 83 ~~~~~l~~~l~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~ 162 (253)
T PRK13768 83 TKADEIKEEIESLDADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLG 162 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcC
Confidence 11122233444457799999999975432 111112211111112789999999975432222 111110 122
Q ss_pred CcCEEEeecCCCCCChhh--HHHHHHH-------hCCCeEEEe-----cCCCCCcCcCCChHHHHHHHhCCCChhHHHHH
Q 019214 241 SVGAVIVTKMDGHAKGGG--ALSAVAA-------TKSPVIFIG-----TGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDK 306 (344)
Q Consensus 241 ~~~~lVinK~D~~~~~~~--~~~~~~~-------~~~pv~~~~-----~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~ 306 (344)
.+..+|+||+|....... ..+.+.. ......+-. ..+.+..+.++.+.+.+|+..++| +++|++.
T Consensus 163 ~~~i~v~nK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~g-l~~L~~~ 241 (253)
T PRK13768 163 LPQIPVLNKADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEG-FDELYAA 241 (253)
T ss_pred CCEEEEEEhHhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcC-HHHHHHH
Confidence 345889999998755321 1121110 000000000 000011122334556788889999 9999999
Q ss_pred HHhhCCC
Q 019214 307 IHEVVPM 313 (344)
Q Consensus 307 i~~~~~~ 313 (344)
|.+.++.
T Consensus 242 I~~~l~~ 248 (253)
T PRK13768 242 IQEVFCG 248 (253)
T ss_pred HHHHcCC
Confidence 9998864
No 42
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.61 E-value=4.1e-15 Score=140.51 Aligned_cols=154 Identities=19% Similarity=0.230 Sum_probs=93.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...|+++|.|||||||++|+|+ |.+ .+++. ..+++++...-....
T Consensus 189 ~~~ValvG~~NvGKSSLln~L~------~~~-~~v~~-----------~~~tT~d~~~~~i~~----------------- 233 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALT------GAD-VYAAD-----------QLFATLDPTTRRLDL----------------- 233 (351)
T ss_pred CcEEEEECCCCCCHHHHHHHHh------CCc-eeecc-----------CCccccCCEEEEEEe-----------------
Confidence 3579999999999999999999 766 34443 233333322111101
Q ss_pred hCCCCEEEEcCCCCC-cchHHHHHHHHH-hhhhcCCcEEEEEEcCCcchhH--H----HHHHHHhccCCcCEEEeecCCC
Q 019214 181 KENCDLIIVDTSGRH-KQEAALFEEMRQ-VSEATNPDLVIFVMDSSIGQAA--F----DQAQAFKQSVSVGAVIVTKMDG 252 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~-~~~~~~~~~l~~-~~~~~~~d~illvvda~~~~~~--~----~~~~~~~~~~~~~~lVinK~D~ 252 (344)
..+..+.|+||||.. .......+.++. +.....+|.+++|+|++..... . .....+.....+..+|+||+|.
T Consensus 234 ~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl 313 (351)
T TIGR03156 234 PDGGEVLLTDTVGFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDL 313 (351)
T ss_pred CCCceEEEEecCcccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecC
Confidence 015678999999983 223344444432 2335578999999999865221 1 1222222112456889999998
Q ss_pred CCChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhh
Q 019214 253 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (344)
Q Consensus 253 ~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~ 310 (344)
.... ...... . ...+.+.+|+++|+| +++|.+.|.+.
T Consensus 314 ~~~~--~v~~~~------------~------~~~~~i~iSAktg~G-I~eL~~~I~~~ 350 (351)
T TIGR03156 314 LDEP--RIERLE------------E------GYPEAVFVSAKTGEG-LDLLLEAIAER 350 (351)
T ss_pred CChH--hHHHHH------------h------CCCCEEEEEccCCCC-HHHHHHHHHhh
Confidence 6431 111111 0 011346789999999 99999998764
No 43
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.60 E-value=9.5e-15 Score=141.90 Aligned_cols=202 Identities=17% Similarity=0.207 Sum_probs=117.6
Q ss_pred chHhHHHHHHHHHHHhhcccccChhhhHHHHHHHHHHHHHCCCCHHHHHHHH--HHHHHhhcccccccCCChHHHHHHHH
Q 019214 2 VLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQ--TNIKKIVNLDDLAAGHNKRRIIQQAI 79 (344)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l 79 (344)
|+++++|.++..++.++ +.|...+...++.++++.+-. ..+... ...+
T Consensus 135 A~~~l~G~ls~~~~~~r--------------~~l~~~~a~iea~iDf~ee~~~~~~~~~~----------------l~~~ 184 (442)
T TIGR00450 135 ALNKLAGELDQKIEAIR--------------KSLLQLLAQVEVNIDYEEDDDEQDSLNQL----------------LLSI 184 (442)
T ss_pred HHHhcCcHHHHHHHHHH--------------HHHHHHHHHeeEECCcCCCCccHHHHHHH----------------HHHH
Confidence 56788888888888887 667888888777777766421 111111 1334
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcce
Q 019214 80 FNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPF 159 (344)
Q Consensus 80 ~~~l~~~l~~~~~~~~~~~~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~ 159 (344)
...+.+++... ...... .+..|+++|+|||||||++|+|. +...++++. .+.++++....
T Consensus 185 ~~~l~~ll~~~-~~~~~~--~g~kVvIvG~~nvGKSSLiN~L~------~~~~aivs~-----------~pgtTrd~~~~ 244 (442)
T TIGR00450 185 IAELKDILNSY-KLEKLD--DGFKLAIVGSPNVGKSSLLNALL------KQDRAIVSD-----------IKGTTRDVVEG 244 (442)
T ss_pred HHHHHHHHHHH-HHHHhh--cCCEEEEECCCCCcHHHHHHHHh------CCCCcccCC-----------CCCcEEEEEEE
Confidence 44555555443 221222 33569999999999999999999 777766665 33344332211
Q ss_pred eccCCCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHH---HHhhhhcCCcEEEEEEcCCcchhHHH-HHHH
Q 019214 160 YGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEM---RQVSEATNPDLVIFVMDSSIGQAAFD-QAQA 235 (344)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l---~~~~~~~~~d~illvvda~~~~~~~~-~~~~ 235 (344)
.... .++.+.++||||...... ..+.. +.......+|.+++|+|++.+....+ ....
T Consensus 245 ~i~~------------------~g~~v~l~DTaG~~~~~~-~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~~l~~ 305 (442)
T TIGR00450 245 DFEL------------------NGILIKLLDTAGIREHAD-FVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDFLIID 305 (442)
T ss_pred EEEE------------------CCEEEEEeeCCCcccchh-HHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHHHHHH
Confidence 1111 256778999999865432 22211 12233457899999999986532211 2223
Q ss_pred HhccCCcCEEEeecCCCCCChhhHHHHHHHhCCCeEEEe
Q 019214 236 FKQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIG 274 (344)
Q Consensus 236 ~~~~~~~~~lVinK~D~~~~~~~~~~~~~~~~~pv~~~~ 274 (344)
......+..+|+||+|+... .........+.|+..++
T Consensus 306 ~~~~~~piIlV~NK~Dl~~~--~~~~~~~~~~~~~~~vS 342 (442)
T TIGR00450 306 LNKSKKPFILVLNKIDLKIN--SLEFFVSSKVLNSSNLS 342 (442)
T ss_pred HhhCCCCEEEEEECccCCCc--chhhhhhhcCCceEEEE
Confidence 32223455789999998644 11122233455655544
No 44
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=4.1e-15 Score=140.44 Aligned_cols=186 Identities=17% Similarity=0.202 Sum_probs=120.7
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcc
Q 019214 79 IFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIP 158 (344)
Q Consensus 79 l~~~l~~~l~~~~~~~~~~~~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~ 158 (344)
+.+.+...+.........+. +.-|+++|+|||||||++|.|+ ..++.||+. .++++++-+.
T Consensus 248 l~d~v~s~l~~~~~~e~lq~--gl~iaIvGrPNvGKSSLlNaL~------~~drsIVSp-----------v~GTTRDaie 308 (531)
T KOG1191|consen 248 LLDDVLSHLNKADEIERLQS--GLQIAIVGRPNVGKSSLLNALS------REDRSIVSP-----------VPGTTRDAIE 308 (531)
T ss_pred HHHHHHHHHHhhhhHHHhhc--CCeEEEEcCCCCCHHHHHHHHh------cCCceEeCC-----------CCCcchhhhe
Confidence 33455555554433333332 2569999999999999999999 999999999 8888888876
Q ss_pred eeccCCCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHH---HHHhhhhcCCcEEEEEEcCCcc--hhHHHHH
Q 019214 159 FYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEE---MRQVSEATNPDLVIFVMDSSIG--QAAFDQA 233 (344)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~---l~~~~~~~~~d~illvvda~~~--~~~~~~~ 233 (344)
..... +++.+.++||||+.....+..+. .++..+...+|++++|+||... .....+.
T Consensus 309 a~v~~------------------~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~ 370 (531)
T KOG1191|consen 309 AQVTV------------------NGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIA 370 (531)
T ss_pred eEeec------------------CCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHH
Confidence 54322 38999999999997632222333 3455566789999999999432 2222222
Q ss_pred HHHhcc------------CCcCEEEeecCCCCCChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChh
Q 019214 234 QAFKQS------------VSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWS 301 (344)
Q Consensus 234 ~~~~~~------------~~~~~lVinK~D~~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~ 301 (344)
+.+... ....+++.||.|...... .-.+.|+.|.+. ...+ .+....++|+.+++| ++
T Consensus 371 ~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~------~~~~~~~~~~~~-~~~~---~~~i~~~vs~~tkeg-~~ 439 (531)
T KOG1191|consen 371 RILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIP------EMTKIPVVYPSA-EGRS---VFPIVVEVSCTTKEG-CE 439 (531)
T ss_pred HHHHHhccceEEEeccccccceEEEechhhccCccc------cccCCceecccc-ccCc---ccceEEEeeechhhh-HH
Confidence 222111 122366788888765521 124456666553 1111 223345589999999 99
Q ss_pred HHHHHHHhhCC
Q 019214 302 GFMDKIHEVVP 312 (344)
Q Consensus 302 ~l~~~i~~~~~ 312 (344)
.|...+.+.+.
T Consensus 440 ~L~~all~~~~ 450 (531)
T KOG1191|consen 440 RLSTALLNIVE 450 (531)
T ss_pred HHHHHHHHHHH
Confidence 99999888763
No 45
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.58 E-value=1.5e-14 Score=121.09 Aligned_cols=161 Identities=25% Similarity=0.285 Sum_probs=97.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
..+|+++|++|+||||+++++. |.+++.+..++.. +........ .
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~------~~~~~~~~~~~~~-----------~~~~~~~~~--~---------------- 47 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALV------GQKISIVSPKPQT-----------TRNRIRGIY--T---------------- 47 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHh------CCceEeccCCCCc-----------eeceEEEEE--E----------------
Confidence 3579999999999999999999 8888877663321 111111000 0
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHHHH--HhhhhcCCcEEEEEEcCCcc--hhHHHHHHHHhccCCcCEEEeecCCCCCCh
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEEMR--QVSEATNPDLVIFVMDSSIG--QAAFDQAQAFKQSVSVGAVIVTKMDGHAKG 256 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~l~--~~~~~~~~d~illvvda~~~--~~~~~~~~~~~~~~~~~~lVinK~D~~~~~ 256 (344)
..+++++++||||...........+. .......+|.+++|+|++.. .........+.....+..+|+||+|+....
T Consensus 48 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~ 127 (168)
T cd04163 48 DDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDK 127 (168)
T ss_pred cCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccH
Confidence 01567899999998654432222221 11223467999999999865 222223333333224568999999997433
Q ss_pred hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhh
Q 019214 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (344)
Q Consensus 257 ~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~ 310 (344)
......... +....+..+.+.+|+..+.| ++++++.|.+.
T Consensus 128 ~~~~~~~~~-------------~~~~~~~~~~~~~s~~~~~~-~~~l~~~l~~~ 167 (168)
T cd04163 128 EDLLPLLEK-------------LKELGPFAEIFPISALKGEN-VDELLEEIVKY 167 (168)
T ss_pred HHHHHHHHH-------------HHhccCCCceEEEEeccCCC-hHHHHHHHHhh
Confidence 332222221 11111233455678889999 99999998764
No 46
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=99.58 E-value=9.1e-14 Score=120.39 Aligned_cols=175 Identities=20% Similarity=0.204 Sum_probs=103.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHc-CCccEEeecCcCcch----------------hHHHHHhhccc-C---------
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKK-GWKPALVCADTFRAG----------------AFDQLKQNATK-A--------- 155 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~-g~~v~iv~~D~~~~~----------------~~~~l~~~~~~-~--------- 155 (344)
+|+|+|+.||||||+++.|+..+..+ |++|.+||+|| ..+ ..+.++..... .
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp-d~nL~~~LGve~~~~~lg~~~e~~~k~~~a~~~~~~~~~fk 80 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP-DSNLPEALGVEEPMKYLGGKRELLKKRTGAEPGGPPGEMFK 80 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCC-CCChHHhcCCCCCCcccccHHHHHHHHhccCCCCCcccccc
Confidence 58999999999999999988877665 59999999998 211 11222211111 0
Q ss_pred -----------------Ccceec-------cCCCCCHHH-HHHHHHHHHHhCCCCEEEEcC-CCCCcchHHHHHHHHHhh
Q 019214 156 -----------------KIPFYG-------SYTESDPVR-IAVEGVETFKKENCDLIIVDT-SGRHKQEAALFEEMRQVS 209 (344)
Q Consensus 156 -----------------~v~~~~-------~~~~~~~~~-~~~~~l~~~~~~~~d~vlIDT-~G~~~~~~~~~~~l~~~~ 209 (344)
++.... .....+|+. ++++.++++..+.+++|++|| ||+.+..+..
T Consensus 81 ~~~~~~di~~e~~~e~~~~~LLvmGkie~~GeGC~Cp~~allR~~l~~l~~~~~e~VivDtEAGiEHfgRg~-------- 152 (255)
T COG3640 81 ENPLVSDLPDEYLVENGDIDLLVMGKIEEGGEGCACPMNALLRRLLRHLILNRYEVVIVDTEAGIEHFGRGT-------- 152 (255)
T ss_pred cCcchhhhhHHHhhhcCCccEEEeccccCCCCcccchHHHHHHHHHHHHhcccCcEEEEecccchhhhcccc--------
Confidence 000000 011123443 456667888888899999999 9986543221
Q ss_pred hhcCCcEEEEEEcCCcch-hHHHHHHHHhcc--CCcCEEEeecCCCCCChhhHHHHHHHhCCCeEEEecCCCCCcCcCCC
Q 019214 210 EATNPDLVIFVMDSSIGQ-AAFDQAQAFKQS--VSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFD 286 (344)
Q Consensus 210 ~~~~~d~illvvda~~~~-~~~~~~~~~~~~--~~~~~lVinK~D~~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~ 286 (344)
....|.+++|+||+... ...+....+... .+...+|+||+|.. ...........+.++..+ .|++
T Consensus 153 -~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~--e~~~~~~~~~~~~~vlg~---------iP~d 220 (255)
T COG3640 153 -IEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE--EELLRELAEELGLEVLGV---------IPYD 220 (255)
T ss_pred -ccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch--hHHHHhhhhccCCeEEEE---------ccCC
Confidence 23579999999998641 111212222221 23458999999976 222334445455555443 4555
Q ss_pred hHHHHHHHhCCC
Q 019214 287 VKPFVSRLLGMG 298 (344)
Q Consensus 287 ~~~~is~~~g~g 298 (344)
+.++-..+.|+.
T Consensus 221 ~~v~~~dl~G~p 232 (255)
T COG3640 221 PEVVEADLKGEP 232 (255)
T ss_pred HHHHhccccCCc
Confidence 555444445554
No 47
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.56 E-value=2.6e-14 Score=129.86 Aligned_cols=181 Identities=14% Similarity=0.143 Sum_probs=116.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCC---CCCHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYT---ESDPVRIAVEGV 176 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~---~~~~~~~~~~~l 176 (344)
+..++.++|+||+|||||+.++...+... .+++++..|.......+.++. .++++....+ ..-...++.+++
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~~l~~~-~~~~VI~gD~~t~~Da~rI~~----~g~pvvqi~tG~~Chl~a~mv~~Al 177 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLMRLKDS-VPCAVIEGDQQTVNDAARIRA----TGTPAIQVNTGKGCHLDAQMIADAA 177 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccC-CCEEEECCCcCcHHHHHHHHh----cCCcEEEecCCCCCcCcHHHHHHHH
Confidence 45789999999999999999999888654 589999998765555555543 2333333222 122345567778
Q ss_pred HHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchh-HHHHHHHHhccCCcCEEEeecCCCCCC
Q 019214 177 ETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA-AFDQAQAFKQSVSVGAVIVTKMDGHAK 255 (344)
Q Consensus 177 ~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~-~~~~~~~~~~~~~~~~lVinK~D~~~~ 255 (344)
..+...+.|++||++.|....+..+ ....+.-+.+++...+.+ ....-..|. ..+.+|+||+|+...
T Consensus 178 ~~L~~~~~d~liIEnvGnLvcPa~f---------dlge~~~v~vlsV~eg~dkplKyp~~f~---~ADIVVLNKiDLl~~ 245 (290)
T PRK10463 178 PRLPLDDNGILFIENVGNLVCPASF---------DLGEKHKVAVLSVTEGEDKPLKYPHMFA---AASLMLLNKVDLLPY 245 (290)
T ss_pred HHHhhcCCcEEEEECCCCccCCCcc---------chhhceeEEEEECccccccchhccchhh---cCcEEEEEhHHcCcc
Confidence 8887778999999999963222111 111233457777766643 221112222 236899999999764
Q ss_pred hhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhh
Q 019214 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (344)
Q Consensus 256 ~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~ 310 (344)
....+..+. +.+..+.+..+.+.+|+++|+| ++.|+++|.+.
T Consensus 246 ~~~dle~~~------------~~lr~lnp~a~I~~vSA~tGeG-ld~L~~~L~~~ 287 (290)
T PRK10463 246 LNFDVEKCI------------ACAREVNPEIEIILISATSGEG-MDQWLNWLETQ 287 (290)
T ss_pred cHHHHHHHH------------HHHHhhCCCCcEEEEECCCCCC-HHHHHHHHHHh
Confidence 322222222 1223345667778889999999 99999999774
No 48
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.55 E-value=3.6e-14 Score=124.75 Aligned_cols=184 Identities=15% Similarity=0.165 Sum_probs=108.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCC---CCHHHHHHHH
Q 019214 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTE---SDPVRIAVEG 175 (344)
Q Consensus 99 ~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~---~~~~~~~~~~ 175 (344)
+++++|+|+|++|+||||++++++..+.. +.+++++..|+....+.+.++... .++.....+ ........+.
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~-~~~v~v~~~~~~~~~D~~~~~~~~----~~~~~l~~gcic~~~~~~~~~~ 94 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKD-EVKIAVIEGDVITKFDAERLRKYG----APAIQINTGKECHLDAHMVAHA 94 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHhc-CCeEEEEECCCCCcccHHHHHHcC----CcEEEEcCCCcccCChHHHHHH
Confidence 35689999999999999999999987653 579999999986544444554322 121111111 1111223345
Q ss_pred HHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHHHHHHHhccCCcCEEEeecCCCCCC
Q 019214 176 VETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAK 255 (344)
Q Consensus 176 l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~~~~~~~~~~~~~~lVinK~D~~~~ 255 (344)
+..+...++|+|||||.|.......+ ....+..+.|+|+..+........... ..+..+++||+|....
T Consensus 95 l~~~~~~~~d~IiIEt~G~l~~~~~~---------~~~~~~~i~Vvd~~~~d~~~~~~~~~~--~~a~iiv~NK~Dl~~~ 163 (207)
T TIGR00073 95 LEDLPLDDIDLLFIENVGNLVCPADF---------DLGEHMRVVLLSVTEGDDKPLKYPGMF--KEADLIVINKADLAEA 163 (207)
T ss_pred HHHhccCCCCEEEEecCCCcCCCccc---------ccccCeEEEEEecCcccchhhhhHhHH--hhCCEEEEEHHHcccc
Confidence 55554457899999999942211111 123455678888876543222111111 1346889999999653
Q ss_pred hhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 256 ~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
......... +.+..+.+..+.+.+|+++|+| ++.+++++.+..
T Consensus 164 ~~~~~~~~~------------~~l~~~~~~~~i~~~Sa~~g~g-v~~l~~~i~~~~ 206 (207)
T TIGR00073 164 VGFDVEKMK------------ADAKKINPEAEIILMSLKTGEG-LDEWLEFLEGQV 206 (207)
T ss_pred chhhHHHHH------------HHHHHhCCCCCEEEEECCCCCC-HHHHHHHHHHhh
Confidence 211111111 0011112335567789999999 999999988753
No 49
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=99.55 E-value=6e-14 Score=116.59 Aligned_cols=136 Identities=22% Similarity=0.265 Sum_probs=84.6
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhH----H---HHHhhcccCCcceeccCCC---CCHHHHHH
Q 019214 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAF----D---QLKQNATKAKIPFYGSYTE---SDPVRIAV 173 (344)
Q Consensus 104 i~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~----~---~l~~~~~~~~v~~~~~~~~---~~~~~~~~ 173 (344)
+.++|++|+||||++.+++..+...|.++.++++|+...... . .+.......++.+.....+ ..+.....
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILGDRIRMERHASDPGVFIRSLATRGFLGGLSRATP 81 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCcccchhcCceEhhheecCCCceEEEcCCcCcccccchhHH
Confidence 788999999999999999999999999999999998543221 0 0111111112211111111 12223344
Q ss_pred HHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchh-HHHHHHHHhccCCcCEEEeecCC
Q 019214 174 EGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA-AFDQAQAFKQSVSVGAVIVTKMD 251 (344)
Q Consensus 174 ~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~-~~~~~~~~~~~~~~~~lVinK~D 251 (344)
+.++.++..+||++||||||....... ....+|.+++|..++.+.. .......|.. .+.+++||+|
T Consensus 82 ~~~~~~~~~~~D~iiIDtaG~~~~~~~---------~~~~Ad~~ivv~tpe~~D~y~~~k~~~~~~---~~~~~~~k~~ 148 (148)
T cd03114 82 EVIRVLDAAGFDVIIVETVGVGQSEVD---------IASMADTTVVVMAPGAGDDIQAIKAGIMEI---ADIVVVNKAD 148 (148)
T ss_pred HHHHHHHhcCCCEEEEECCccChhhhh---------HHHhCCEEEEEECCCchhHHHHhhhhHhhh---cCEEEEeCCC
Confidence 555555556899999999998643211 1235799999998874322 1222233332 3688999997
No 50
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.52 E-value=8.3e-14 Score=135.81 Aligned_cols=157 Identities=22% Similarity=0.345 Sum_probs=100.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHhC
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 182 (344)
+|+++|.|||||||++|.|. |.+.++++. .+..+++........ .
T Consensus 1 ~i~ivG~~nvGKStL~n~l~------~~~~~~v~~-----------~~g~t~d~~~~~~~~------------------~ 45 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLT------GKRDAIVSD-----------TPGVTRDRKYGDAEW------------------G 45 (429)
T ss_pred CEEEECCCCCCHHHHHHHHh------CCCcceecC-----------CCCcccCceEEEEEE------------------C
Confidence 38999999999999999999 888777776 233333322111111 1
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHH--hhhhcCCcEEEEEEcCCcchh--HHHHHHHHhccCCcCEEEeecCCCCCChhh
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQ--VSEATNPDLVIFVMDSSIGQA--AFDQAQAFKQSVSVGAVIVTKMDGHAKGGG 258 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~--~~~~~~~d~illvvda~~~~~--~~~~~~~~~~~~~~~~lVinK~D~~~~~~~ 258 (344)
+..+.++||||.......+.+.+.. ......+|.+++|+|++.+.. .......+.+...+..+|+||+|.......
T Consensus 46 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~ 125 (429)
T TIGR03594 46 GREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAV 125 (429)
T ss_pred CeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCccccc
Confidence 5568999999985443333333322 223446899999999987632 233444444444556889999998654221
Q ss_pred HHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCC
Q 019214 259 ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (344)
Q Consensus 259 ~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~ 313 (344)
. ......+ +.+.+.+|+..|.| ++++++.+.+.++.
T Consensus 126 ~-~~~~~lg-----------------~~~~~~vSa~~g~g-v~~ll~~i~~~l~~ 161 (429)
T TIGR03594 126 A-AEFYSLG-----------------FGEPIPISAEHGRG-IGDLLDAILELLPE 161 (429)
T ss_pred H-HHHHhcC-----------------CCCeEEEeCCcCCC-hHHHHHHHHHhcCc
Confidence 1 1112111 22346778899999 99999999988754
No 51
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.52 E-value=5.9e-14 Score=125.42 Aligned_cols=176 Identities=20% Similarity=0.252 Sum_probs=110.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHH
Q 019214 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (344)
Q Consensus 99 ~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 178 (344)
.+.-.++++|+|||||||++|.+. |.+|+.++. +..+++..+- +..+.
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mi------g~kv~~vS~-----------K~~TTr~~il--gi~ts------------- 117 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMI------GQKVSAVSR-----------KVHTTRHRIL--GIITS------------- 117 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhh------CCccccccc-----------cccceeeeee--EEEec-------------
Confidence 455679999999999999999999 999999998 7777776553 22232
Q ss_pred HHhCCCCEEEEcCCCCCcchHHHHHHH-HH----h-hhhcCCcEEEEEEcCCcc-----hhHHHHHHHHhccCCcCEEEe
Q 019214 179 FKKENCDLIIVDTSGRHKQEAALFEEM-RQ----V-SEATNPDLVIFVMDSSIG-----QAAFDQAQAFKQSVSVGAVIV 247 (344)
Q Consensus 179 ~~~~~~d~vlIDT~G~~~~~~~~~~~l-~~----~-~~~~~~d~illvvda~~~-----~~~~~~~~~~~~~~~~~~lVi 247 (344)
.++.++|+||||...........+ .. - .++..+|.+++|+|++.. ...+..+..+.. .+.++|+
T Consensus 118 ---~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~--ips~lvm 192 (379)
T KOG1423|consen 118 ---GETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSK--IPSILVM 192 (379)
T ss_pred ---CceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhc--CCceeec
Confidence 278899999999754321111111 11 1 123468999999999842 233444455543 2468899
Q ss_pred ecCCCCCChhhHHHHHHHhCCCeEE---EecCC---CCCc-------CcC--CChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 248 TKMDGHAKGGGALSAVAATKSPVIF---IGTGE---HMDE-------FEV--FDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 248 nK~D~~~~~~~~~~~~~~~~~pv~~---~~~g~---~~~~-------l~~--~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
||+|...+..-++......---... ...-+ ..+. ..+ |...+++|++.|+| +++|-+++-...+
T Consensus 193 nkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~G-ikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 193 NKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEG-IKDLKQYLMSQAP 271 (379)
T ss_pred cchhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccC-HHHHHHHHHhcCC
Confidence 9999866543333332211100000 00000 0010 012 55678899999999 9999999888764
No 52
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.49 E-value=2.7e-13 Score=112.83 Aligned_cols=152 Identities=22% Similarity=0.312 Sum_probs=90.7
Q ss_pred EEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHhCCC
Q 019214 105 MFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENC 184 (344)
Q Consensus 105 ~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 184 (344)
+++|.+||||||++++|+ +.+...++..+ .+++........ ..++
T Consensus 1 ~l~G~~~~GKssl~~~l~------~~~~~~~~~~~-----------~~t~~~~~~~~~------------------~~~~ 45 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLT------GRRDAIVEDTP-----------GVTRDRIYGEAE------------------WGGR 45 (157)
T ss_pred CccCCCCCCHHHHHHHHh------CCcEEeecCCC-----------CceeCceeEEEE------------------ECCe
Confidence 478999999999999999 77665555422 111111110000 1257
Q ss_pred CEEEEcCCCCCcchHHHHHHHHH--hhhhcCCcEEEEEEcCCcch--hHHHHHHHHhccCCcCEEEeecCCCCCChhhHH
Q 019214 185 DLIIVDTSGRHKQEAALFEEMRQ--VSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGAL 260 (344)
Q Consensus 185 d~vlIDT~G~~~~~~~~~~~l~~--~~~~~~~d~illvvda~~~~--~~~~~~~~~~~~~~~~~lVinK~D~~~~~~~~~ 260 (344)
.+.++||||...........+.. ......+|.+++|+|+..+. ........+.....+..+|+||+|....... .
T Consensus 46 ~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~-~ 124 (157)
T cd01894 46 EFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE-A 124 (157)
T ss_pred EEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH-H
Confidence 78999999987644322222221 12234689999999987542 2222333333333456889999998765322 1
Q ss_pred HHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhh
Q 019214 261 SAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (344)
Q Consensus 261 ~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~ 310 (344)
..+...+ ..+.+.+|++.|+| ++++++++.+.
T Consensus 125 ~~~~~~~-----------------~~~~~~~Sa~~~~g-v~~l~~~l~~~ 156 (157)
T cd01894 125 AEFYSLG-----------------FGEPIPISAEHGRG-IGDLLDAILEL 156 (157)
T ss_pred HHHHhcC-----------------CCCeEEEecccCCC-HHHHHHHHHhh
Confidence 2222111 11345688889999 99999988754
No 53
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=99.49 E-value=2.1e-12 Score=113.02 Aligned_cols=215 Identities=19% Similarity=0.201 Sum_probs=122.5
Q ss_pred eEEEEE-cCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchh-HHHHH--hhcccCCcceeccCCCCCHHHHHHHHHH
Q 019214 102 SVIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA-FDQLK--QNATKAKIPFYGSYTESDPVRIAVEGVE 177 (344)
Q Consensus 102 ~ii~iv-G~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~-~~~l~--~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 177 (344)
++|.++ .+.|+||||++..||..|+.+|.+|+++|+||.++-+ |.+.. .......+.++.. +....+.+.++
T Consensus 2 ~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~----~e~~~l~~~~e 77 (231)
T PF07015_consen 2 PVITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEA----DELTILEDAYE 77 (231)
T ss_pred CeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEec----cchhhHHHHHH
Confidence 356666 5669999999999999999999999999999999865 43321 1112223333331 22334455566
Q ss_pred HHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc--hhHHHH---HHHHh---ccCCcCEEEeec
Q 019214 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QAAFDQ---AQAFK---QSVSVGAVIVTK 249 (344)
Q Consensus 178 ~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~--~~~~~~---~~~~~---~~~~~~~lVinK 249 (344)
.....+||||||||+|..+..... .+..+|.++...-++.. ....+. ..... ....+..+++|+
T Consensus 78 ~a~~~~~d~VlvDleG~as~~~~~--------aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr 149 (231)
T PF07015_consen 78 AAEASGFDFVLVDLEGGASELNDY--------AIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTR 149 (231)
T ss_pred HHHhcCCCEEEEeCCCCCchhHHH--------HHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEec
Confidence 665568999999999986543222 12247888877776642 112221 22111 112356899999
Q ss_pred CCCCCC--hhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCCCchHHHHHHHhcCC
Q 019214 250 MDGHAK--GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELLQKLSEGN 327 (344)
Q Consensus 250 ~D~~~~--~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~~~~~~~~~~~~~~~ 327 (344)
+.-... ......... .++|++-+...++ --.+.+...| +-.+-. ...-+....+..+..+...-
T Consensus 150 ~~~~~~~~~~~~~~e~~-~~lpvl~t~l~eR----------~Af~~m~~~G-~l~~~~--~~~~~~~~~r~~a~~~~~a~ 215 (231)
T PF07015_consen 150 VPAARLTRAQRIISEQL-ESLPVLDTELHER----------DAFRAMFSRG-LLHLNL--EDVSNNPSMRLHARHLRTAL 215 (231)
T ss_pred CCcchhhHHHHHHHHHH-hcCCccccccccH----------HHHHHHHHhc-chHhhh--hccCCChhhHHHHHHHHHHH
Confidence 974322 111222222 2577665544332 1233444455 333111 11112223455666666666
Q ss_pred cChHHHHHhHHhhccc
Q 019214 328 FTLRIMFSLCFQDSVL 343 (344)
Q Consensus 328 ~~~~~~~~~~~~~~~~ 343 (344)
....+++++ +.+++|
T Consensus 216 ~e~~~~~~~-~~~~~e 230 (231)
T PF07015_consen 216 EEAQDILKF-IESALE 230 (231)
T ss_pred HHHHHHHHH-HHHHhc
Confidence 677777777 777765
No 54
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.49 E-value=1.8e-13 Score=134.83 Aligned_cols=158 Identities=22% Similarity=0.328 Sum_probs=97.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
..|+++|.|||||||++++|+ |.+.++++. .+..++..+......
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~------~~~~~~v~~-----------~~gvT~d~~~~~~~~------------------ 83 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRIL------GRREAVVED-----------VPGVTRDRVSYDAEW------------------ 83 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHh------CcCcccccC-----------CCCCCEeeEEEEEEE------------------
Confidence 579999999999999999999 777666554 222232222111111
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHHHH--hhhhcCCcEEEEEEcCCcch--hHHHHHHHHhccCCcCEEEeecCCCCCChh
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEMRQ--VSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQSVSVGAVIVTKMDGHAKGG 257 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l~~--~~~~~~~d~illvvda~~~~--~~~~~~~~~~~~~~~~~lVinK~D~~~~~~ 257 (344)
.+..+.++||||.......+...+.. ......+|.+++|+|++.+. ........+.....+..+|+||+|......
T Consensus 84 ~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~ 163 (472)
T PRK03003 84 NGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEA 163 (472)
T ss_pred CCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccch
Confidence 15668899999976332223222221 22344789999999998752 223334444444456688999999854211
Q ss_pred hHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCC
Q 019214 258 GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (344)
Q Consensus 258 ~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~ 313 (344)
.. ......+ +...+.+|+++|.| +++|++.+.+.+..
T Consensus 164 ~~-~~~~~~g-----------------~~~~~~iSA~~g~g-i~eL~~~i~~~l~~ 200 (472)
T PRK03003 164 DA-AALWSLG-----------------LGEPHPVSALHGRG-VGDLLDAVLAALPE 200 (472)
T ss_pred hh-HHHHhcC-----------------CCCeEEEEcCCCCC-cHHHHHHHHhhccc
Confidence 11 1111111 11124689999999 99999999887754
No 55
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=99.49 E-value=8.4e-13 Score=112.30 Aligned_cols=128 Identities=17% Similarity=0.186 Sum_probs=81.7
Q ss_pred EEEE-cCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHhC
Q 019214 104 IMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (344)
Q Consensus 104 i~iv-G~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 182 (344)
|+++ +.+|+||||++.+||..+++.|++|++||.|++++.....+. .......+...++.+...
T Consensus 2 i~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~ 66 (169)
T cd02037 2 IAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKMWR---------------GPMKMGAIKQFLTDVDWG 66 (169)
T ss_pred EEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCCchHHHh---------------CcchHHHHHHHHHHhhcC
Confidence 4555 667999999999999999999999999999998864321110 001112233334444446
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc--hhHHHHHHHHhc-cCCcCEEEeecCCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QAAFDQAQAFKQ-SVSVGAVIVTKMDG 252 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~--~~~~~~~~~~~~-~~~~~~lVinK~D~ 252 (344)
+||+||||||+..... .. .......+|.+++|+.++.. .+.......+.+ ..++.++|+|+.+.
T Consensus 67 ~yD~VIiD~pp~~~~~-~~-----~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~ 133 (169)
T cd02037 67 ELDYLVIDMPPGTGDE-HL-----TLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYF 133 (169)
T ss_pred CCCEEEEeCCCCCcHH-HH-----HHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCcc
Confidence 8999999999875321 11 11112357899999988753 222233333332 23556899999975
No 56
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.49 E-value=2.8e-13 Score=133.39 Aligned_cols=164 Identities=13% Similarity=0.136 Sum_probs=100.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
....|+++|.|||||||++++|. |.+..+++. .+.++++.+......
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~------~~~~~~~s~-----------~~gtT~d~~~~~~~~---------------- 256 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLA------GEERSVVDD-----------VAGTTVDPVDSLIEL---------------- 256 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHh------CCCcccccC-----------CCCccCCcceEEEEE----------------
Confidence 45789999999999999999999 776665554 333333322211111
Q ss_pred HhCCCCEEEEcCCCCCcc-----hHHHHHHHHHhhhhcCCcEEEEEEcCCcchh--HHHHHHHHhccCCcCEEEeecCCC
Q 019214 180 KKENCDLIIVDTSGRHKQ-----EAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAFKQSVSVGAVIVTKMDG 252 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~-----~~~~~~~l~~~~~~~~~d~illvvda~~~~~--~~~~~~~~~~~~~~~~lVinK~D~ 252 (344)
.+..+.|+||||.... ..+....++.......+|.+++|+|++.+.. .............+.++|+||+|+
T Consensus 257 --~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl 334 (472)
T PRK03003 257 --GGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDL 334 (472)
T ss_pred --CCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccc
Confidence 1556789999996321 1233333443344457899999999987632 223333333333456889999998
Q ss_pred CCChh-h-HHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 253 HAKGG-G-ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 253 ~~~~~-~-~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
..... . ...... +.+.. ..+.+.+++|+++|.| ++++++.+.+.+.
T Consensus 335 ~~~~~~~~~~~~i~------------~~l~~-~~~~~~~~~SAk~g~g-v~~lf~~i~~~~~ 382 (472)
T PRK03003 335 VDEDRRYYLEREID------------RELAQ-VPWAPRVNISAKTGRA-VDKLVPALETALE 382 (472)
T ss_pred CChhHHHHHHHHHH------------Hhccc-CCCCCEEEEECCCCCC-HHHHHHHHHHHHH
Confidence 64321 1 111111 11111 1223556789999999 9999999988764
No 57
>PRK11058 GTPase HflX; Provisional
Probab=99.48 E-value=5.5e-13 Score=128.96 Aligned_cols=157 Identities=13% Similarity=0.167 Sum_probs=93.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
..|+++|.|||||||++|+|. |.++. +.. ..+++.+...-.....
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt------~~~~~-v~~-----------~~~tTld~~~~~i~l~----------------- 242 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRIT------EARVY-AAD-----------QLFATLDPTLRRIDVA----------------- 242 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHh------CCcee-ecc-----------CCCCCcCCceEEEEeC-----------------
Confidence 469999999999999999999 87776 333 2233322211000000
Q ss_pred CCCCEEEEcCCCCCc-chHHHHHHHH-HhhhhcCCcEEEEEEcCCcch--hHH----HHHHHHhccCCcCEEEeecCCCC
Q 019214 182 ENCDLIIVDTSGRHK-QEAALFEEMR-QVSEATNPDLVIFVMDSSIGQ--AAF----DQAQAFKQSVSVGAVIVTKMDGH 253 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~-~~~~~~~~l~-~~~~~~~~d~illvvda~~~~--~~~----~~~~~~~~~~~~~~lVinK~D~~ 253 (344)
....++++||||+.. .+....+.+. .+.....+|.+++|+|++... ... ..+..+.....+..+|+||+|..
T Consensus 243 ~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~ 322 (426)
T PRK11058 243 DVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDML 322 (426)
T ss_pred CCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCC
Confidence 023678999999833 2334443332 334456799999999998653 221 12222222224558899999986
Q ss_pred CChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 254 ~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
......... ...+ . ...+.+|+++|+| ++.|.+.|.+.+.
T Consensus 323 ~~~~~~~~~-~~~~-----------~------~~~v~ISAktG~G-IdeL~e~I~~~l~ 362 (426)
T PRK11058 323 DDFEPRIDR-DEEN-----------K------PIRVWLSAQTGAG-IPLLFQALTERLS 362 (426)
T ss_pred CchhHHHHH-HhcC-----------C------CceEEEeCCCCCC-HHHHHHHHHHHhh
Confidence 432211111 0001 0 0124579999999 9999999988774
No 58
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.48 E-value=7e-13 Score=129.28 Aligned_cols=187 Identities=18% Similarity=0.258 Sum_probs=107.1
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCc
Q 019214 78 AIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKI 157 (344)
Q Consensus 78 ~l~~~l~~~l~~~~~~~~~~~~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v 157 (344)
.+.+.+.+.+....... ....+...++++|.+||||||++++|. |.+..+++. .+.+++..+
T Consensus 150 ~ll~~i~~~l~~~~~~~-~~~~~~~~v~ivG~~~~GKSsLin~l~------~~~~~~~~~-----------~~gtt~~~~ 211 (429)
T TIGR03594 150 DLLDAILELLPEEEEEE-EEEDGPIKIAIIGRPNVGKSTLVNALL------GEERVIVSD-----------IAGTTRDSI 211 (429)
T ss_pred HHHHHHHHhcCcccccc-cccCCceEEEEECCCCCCHHHHHHHHH------CCCeeecCC-----------CCCceECcE
Confidence 34455555554322111 112234679999999999999999999 777666554 333333332
Q ss_pred ceeccCCCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCcch-----HHHHHHHHHhhhhcCCcEEEEEEcCCcchhH--H
Q 019214 158 PFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQE-----AALFEEMRQVSEATNPDLVIFVMDSSIGQAA--F 230 (344)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~l~~~~~~~~d~vlIDT~G~~~~~-----~~~~~~l~~~~~~~~~d~illvvda~~~~~~--~ 230 (344)
...... .+..+.++||||..... .+....++.......+|.+++|+|++.+... .
T Consensus 212 ~~~~~~------------------~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~ 273 (429)
T TIGR03594 212 DIPFER------------------NGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDL 273 (429)
T ss_pred eEEEEE------------------CCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHH
Confidence 211111 14578999999974321 1111122333344578999999999876322 2
Q ss_pred HHHHHHhccCCcCEEEeecCCCCCChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhh
Q 019214 231 DQAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (344)
Q Consensus 231 ~~~~~~~~~~~~~~lVinK~D~~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~ 310 (344)
...........+..+|+||+|+............... +.+.. ..+.+.+++|+++|.| ++.+++.+.+.
T Consensus 274 ~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~---------~~~~~-~~~~~vi~~SA~~g~~-v~~l~~~i~~~ 342 (429)
T TIGR03594 274 RIAGLILEAGKALVIVVNKWDLVKDEKTREEFKKELR---------RKLPF-LDFAPIVFISALTGQG-VDKLLDAIDEV 342 (429)
T ss_pred HHHHHHHHcCCcEEEEEECcccCCCHHHHHHHHHHHH---------Hhccc-CCCCceEEEeCCCCCC-HHHHHHHHHHH
Confidence 2333333333456889999998732111111111100 11111 1234667889999999 99999988876
Q ss_pred C
Q 019214 311 V 311 (344)
Q Consensus 311 ~ 311 (344)
+
T Consensus 343 ~ 343 (429)
T TIGR03594 343 Y 343 (429)
T ss_pred H
Confidence 5
No 59
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=99.48 E-value=5.6e-13 Score=117.62 Aligned_cols=164 Identities=15% Similarity=0.102 Sum_probs=91.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhH------------HHHH-----h--------hcccCC
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAF------------DQLK-----Q--------NATKAK 156 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~------------~~l~-----~--------~~~~~~ 156 (344)
++|++.|++||||||++.+||..|++.|++|++||+||+..... +-+. . .....+
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~la~~G~rvLliD~D~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKADSTRLLLGGKAPTTILELAAEDGHVEDLELEDVIFEGFGG 80 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCCCCccccccCCCCCCCHHHHHhhhCCcCCcChhHeeEeCCCC
Confidence 36889999999999999999999999999999999999753321 0010 0 001123
Q ss_pred cceeccCCCCC------H-----HHHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCc
Q 019214 157 IPFYGSYTESD------P-----VRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSI 225 (344)
Q Consensus 157 v~~~~~~~~~~------~-----~~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~ 225 (344)
+.+........ . .... +.+..+ .++||||+|||+|........ .. .....+|.+++|++++.
T Consensus 81 l~vlp~~~~~~~~~~~~~~~~~~~~~l-~~l~~~-~~~yD~ilID~~g~~~~~~~~-~~----l~~~~ad~vliv~~p~~ 153 (212)
T cd02117 81 VKCVESGGPEPGVGCAGRGVITAVNLL-EKEGFA-EDDLDVVLYDVLGDVVCGGFA-MP----IREGKADEIYIVTSGEF 153 (212)
T ss_pred cEEEeCCCCCCCcccCCcchhhHHHHH-Hhcccc-ccCCCEEEEecCCCceecccc-cc----cccccCcEEEEEecccH
Confidence 33332211100 0 0111 122222 457999999998765311100 00 01125899999998874
Q ss_pred ch--h---HHHHHHHHhc--cCCcCEEEeecCCCCCChhhHHHHHHHhCCCeEE
Q 019214 226 GQ--A---AFDQAQAFKQ--SVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIF 272 (344)
Q Consensus 226 ~~--~---~~~~~~~~~~--~~~~~~lVinK~D~~~~~~~~~~~~~~~~~pv~~ 272 (344)
.. . ..+....+.. ...+.++|+||++.........+.....+.|+..
T Consensus 154 ~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~~~~~~~~~~~~~~~~~vl~ 207 (212)
T cd02117 154 MALYAANNICKGIRKYAKSGGVRLGGLICNSRNTDRETELIDAFAERLGTQVIH 207 (212)
T ss_pred HHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCccHHHHHHHHHHHcCCCEEE
Confidence 31 1 2223344432 2345689999998652222222333445555443
No 60
>PHA02518 ParA-like protein; Provisional
Probab=99.47 E-value=1.9e-12 Score=113.73 Aligned_cols=154 Identities=19% Similarity=0.263 Sum_probs=90.4
Q ss_pred eEEEEEcCC-CCCHHHHHHHHHHHHHHcCCccEEeecCcCcchh-HHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 102 SVIMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA-FDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 102 ~ii~ivG~~-GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
++|+|++.. ||||||++.+||.+|+++|++|++||+|++.... |..... .....++... .. ..+.+.+..+
T Consensus 1 ~ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~~~~~~~~~~~-~~~~~i~~~~---~~---~~~~~~l~~~ 73 (211)
T PHA02518 1 KIIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSSTDWAEARE-EGEPLIPVVR---MG---KSIRADLPKV 73 (211)
T ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCChHHHHHhcc-cCCCCCchhh---cc---HHHHHHHHHH
Confidence 367888665 8999999999999999999999999999998655 322111 0001122111 00 1122334444
Q ss_pred HhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch-----hHHHHHHH---HhccCCcCEEEeecCC
Q 019214 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ-----AAFDQAQA---FKQSVSVGAVIVTKMD 251 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~-----~~~~~~~~---~~~~~~~~~lVinK~D 251 (344)
...||+|||||||.... .. +.. ...+|.+++++.++... ...+.... +....+..++|.|+.+
T Consensus 74 -~~~~d~viiD~p~~~~~---~~---~~~--l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~ 144 (211)
T PHA02518 74 -ASGYDYVVVDGAPQDSE---LA---RAA--LRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAI 144 (211)
T ss_pred -hccCCEEEEeCCCCccH---HH---HHH--HHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccC
Confidence 35899999999987432 11 111 22589999999987531 12222222 2223344567889887
Q ss_pred CCCCh-hhHHHHHHHhCCCeE
Q 019214 252 GHAKG-GGALSAVAATKSPVI 271 (344)
Q Consensus 252 ~~~~~-~~~~~~~~~~~~pv~ 271 (344)
..... ....+.+...+.|+.
T Consensus 145 ~~~~~~~~~~~~l~~~~~~~~ 165 (211)
T PHA02518 145 KNTQLYREARKALAGYGLPIL 165 (211)
T ss_pred CcchHHHHHHHHHHHcCchhh
Confidence 54432 334445544455543
No 61
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.47 E-value=5.4e-13 Score=112.59 Aligned_cols=160 Identities=19% Similarity=0.280 Sum_probs=91.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
..|+++|.+|+||||++++|. +.....+...+ .+++....... ..
T Consensus 3 ~~i~i~G~~~~GKstli~~l~------~~~~~~~~~~~-----------~~~~~~~~~~~------------------~~ 47 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALL------GEERVIVSDIA-----------GTTRDSIDVPF------------------EY 47 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHh------CccceeccCCC-----------CCccCceeeEE------------------EE
Confidence 569999999999999999998 65444433311 11111111000 01
Q ss_pred CCCCEEEEcCCCCCcch--H---HHHHHHHHhhhhcCCcEEEEEEcCCcch--hHHHHHHHHhccCCcCEEEeecCCCCC
Q 019214 182 ENCDLIIVDTSGRHKQE--A---ALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQSVSVGAVIVTKMDGHA 254 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~--~---~~~~~l~~~~~~~~~d~illvvda~~~~--~~~~~~~~~~~~~~~~~lVinK~D~~~ 254 (344)
.+.++.++||||..... . +....+........+|.+++|+|++.+. ..............+..+|+||+|+..
T Consensus 48 ~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 127 (174)
T cd01895 48 DGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVE 127 (174)
T ss_pred CCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCC
Confidence 25668899999975331 0 1111122222334689999999987652 222223332222345588999999875
Q ss_pred ChhhHH----HHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhh
Q 019214 255 KGGGAL----SAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (344)
Q Consensus 255 ~~~~~~----~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~ 310 (344)
...... ..+. +.... ....+.+.+|++.|+| ++++.+.+.+.
T Consensus 128 ~~~~~~~~~~~~~~------------~~~~~-~~~~~~~~~Sa~~~~~-i~~~~~~l~~~ 173 (174)
T cd01895 128 KDSKTMKEFKKEIR------------RKLPF-LDYAPIVFISALTGQG-VDKLFDAIDEV 173 (174)
T ss_pred ccHHHHHHHHHHHH------------hhccc-ccCCceEEEeccCCCC-HHHHHHHHHHh
Confidence 522222 1221 11111 1224566789999999 99999888764
No 62
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.46 E-value=4.4e-13 Score=111.44 Aligned_cols=151 Identities=20% Similarity=0.199 Sum_probs=90.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
..|+++|++|+||||+++.+. +.+.+.++.- +.++......... .
T Consensus 2 ~~i~l~G~~~~GKstli~~l~------~~~~~~~~~~-----------~~~~~~~~~~~~~------------------~ 46 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALA------GRDRAIVSDI-----------AGTTRDVIEESID------------------I 46 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHH------CCceEeccCC-----------CCCccceEEEEEE------------------e
Confidence 358999999999999999998 7665544431 1111111100000 1
Q ss_pred CCCCEEEEcCCCCCcchHHHHHH-H-HHhhhhcCCcEEEEEEcCCcchhH--HHHHHHHhccCCcCEEEeecCCCCCChh
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEE-M-RQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFKQSVSVGAVIVTKMDGHAKGG 257 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~-l-~~~~~~~~~d~illvvda~~~~~~--~~~~~~~~~~~~~~~lVinK~D~~~~~~ 257 (344)
.++++.++||||........... + +.......+|.+++|+|++..... ...... ....+..+|+||+|......
T Consensus 47 ~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~~~ 124 (157)
T cd04164 47 GGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPDSE 124 (157)
T ss_pred CCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCccc
Confidence 25678999999975443221111 1 112223468999999999854222 222222 22345688999999875421
Q ss_pred hHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 258 GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 258 ~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
. .......+.+.+|+..|.| +++|+++|.+.+
T Consensus 125 ~---------------------~~~~~~~~~~~~Sa~~~~~-v~~l~~~l~~~~ 156 (157)
T cd04164 125 L---------------------LSLLAGKPIIAISAKTGEG-LDELKEALLELA 156 (157)
T ss_pred c---------------------ccccCCCceEEEECCCCCC-HHHHHHHHHHhh
Confidence 1 0111223456678889999 999999988754
No 63
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.45 E-value=6.3e-13 Score=129.84 Aligned_cols=156 Identities=22% Similarity=0.316 Sum_probs=95.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
..|+++|.|||||||++++|+ |.+.++++. .+..++........ .
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~------~~~~~~v~~-----------~~~~t~d~~~~~~~------------------~ 46 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLT------GKRDAIVAD-----------TPGVTRDRIYGEAE------------------W 46 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHh------CCCceeeCC-----------CCCCcccceEEEEE------------------E
Confidence 368999999999999999999 888777665 22222222111110 1
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHHHH--hhhhcCCcEEEEEEcCCcchhH--HHHHHHHhccCCcCEEEeecCCCCCChh
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEMRQ--VSEATNPDLVIFVMDSSIGQAA--FDQAQAFKQSVSVGAVIVTKMDGHAKGG 257 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l~~--~~~~~~~d~illvvda~~~~~~--~~~~~~~~~~~~~~~lVinK~D~~~~~~ 257 (344)
.+..+.++||||...........+.. ......+|.+++|+|++.+... ......+.....+..+|+||+|......
T Consensus 47 ~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~~ 126 (435)
T PRK00093 47 LGREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEEA 126 (435)
T ss_pred CCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccchh
Confidence 25778999999987533223333332 2234578999999999875222 2333344433445688999999754221
Q ss_pred hHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 258 GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 258 ~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
.. ......+ +...+.+|+..|.| ++++++.|.+..
T Consensus 127 ~~-~~~~~lg-----------------~~~~~~iSa~~g~g-v~~l~~~I~~~~ 161 (435)
T PRK00093 127 DA-YEFYSLG-----------------LGEPYPISAEHGRG-IGDLLDAILEEL 161 (435)
T ss_pred hH-HHHHhcC-----------------CCCCEEEEeeCCCC-HHHHHHHHHhhC
Confidence 11 1112111 11234578889999 999999987743
No 64
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.45 E-value=9.1e-13 Score=135.80 Aligned_cols=164 Identities=15% Similarity=0.177 Sum_probs=101.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...|+++|.|||||||++++|. |.++.+++. .+.++++.+......
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~------~~~~~~v~~-----------~~gtT~d~~~~~~~~----------------- 495 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLT------HEERAVVND-----------LAGTTRDPVDEIVEI----------------- 495 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHh------CccccccCC-----------CCCCCcCcceeEEEE-----------------
Confidence 4679999999999999999999 877776665 333443332211111
Q ss_pred hCCCCEEEEcCCCCCcch-----HHHHHHHHHhhhhcCCcEEEEEEcCCcchh--HHHHHHHHhccCCcCEEEeecCCCC
Q 019214 181 KENCDLIIVDTSGRHKQE-----AALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAFKQSVSVGAVIVTKMDGH 253 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~-----~~~~~~l~~~~~~~~~d~illvvda~~~~~--~~~~~~~~~~~~~~~~lVinK~D~~ 253 (344)
.+.++.++||||..... .+....++.......+|.+++|+|++.+.. .............+..+|+||+|+.
T Consensus 496 -~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~ 574 (712)
T PRK09518 496 -DGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLM 574 (712)
T ss_pred -CCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcC
Confidence 25678899999974211 122333344444557899999999987632 2233333333334568899999986
Q ss_pred CChh-hHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 254 AKGG-GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 254 ~~~~-~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
.... ..+..... ..+. ...+.+.+++|+++|.| +++|++.+.+.++
T Consensus 575 ~~~~~~~~~~~~~-----------~~l~-~~~~~~ii~iSAktg~g-v~~L~~~i~~~~~ 621 (712)
T PRK09518 575 DEFRRQRLERLWK-----------TEFD-RVTWARRVNLSAKTGWH-TNRLAPAMQEALE 621 (712)
T ss_pred ChhHHHHHHHHHH-----------Hhcc-CCCCCCEEEEECCCCCC-HHHHHHHHHHHHH
Confidence 5321 11111111 1111 11234556789999999 9999999988764
No 65
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.44 E-value=1.4e-12 Score=127.44 Aligned_cols=163 Identities=18% Similarity=0.239 Sum_probs=100.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
.+..++++|.|||||||++++|. |....+++. .+.+++..+......
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll------~~~~~~~~~-----------~~gtt~~~~~~~~~~---------------- 218 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALL------GEERVIVSD-----------IAGTTRDSIDTPFER---------------- 218 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHh------CCCceeecC-----------CCCceEEEEEEEEEE----------------
Confidence 35789999999999999999999 887777765 333444333221111
Q ss_pred HhCCCCEEEEcCCCCCcch--HHHHH---HHHHhhhhcCCcEEEEEEcCCcchhH--HHHHHHHhccCCcCEEEeecCCC
Q 019214 180 KKENCDLIIVDTSGRHKQE--AALFE---EMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFKQSVSVGAVIVTKMDG 252 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~--~~~~~---~l~~~~~~~~~d~illvvda~~~~~~--~~~~~~~~~~~~~~~lVinK~D~ 252 (344)
.+.++.++||||..... ....+ .++.+.....+|.+++|+|++.+... ............+..+|+||+|.
T Consensus 219 --~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl 296 (435)
T PRK00093 219 --DGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDL 296 (435)
T ss_pred --CCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccC
Confidence 25678999999974321 11111 12333344568999999999876322 22333333333456889999998
Q ss_pred CCCh--hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 253 HAKG--GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 253 ~~~~--~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
.... ....+.+. ..+.. ..+.+.+++|+++|.| ++++++.+.+.+
T Consensus 297 ~~~~~~~~~~~~~~------------~~l~~-~~~~~i~~~SA~~~~g-v~~l~~~i~~~~ 343 (435)
T PRK00093 297 VDEKTMEEFKKELR------------RRLPF-LDYAPIVFISALTGQG-VDKLLEAIDEAY 343 (435)
T ss_pred CCHHHHHHHHHHHH------------Hhccc-ccCCCEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 7331 11111111 11111 1234677789999999 999998887755
No 66
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=99.44 E-value=7.5e-12 Score=111.65 Aligned_cols=140 Identities=14% Similarity=0.140 Sum_probs=83.2
Q ss_pred eEEEEEcCC-CCCHHHHHHHHHHHHHHcCCccEEeecCcCcchh-HHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 102 SVIMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA-FDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 102 ~ii~ivG~~-GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
++|+|.+.. ||||||++.+||..+++.|++|++||+||++... |-.-..... ..+.............+...+...
T Consensus 2 ~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s~~~w~~~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~~ 79 (231)
T PRK13849 2 KLLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRPLTRWKENALRSN--TWDPACEVYAADELPLLEAAYEDA 79 (231)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHhhcccc--CCCccceecCCCHHHHHHHHHHHH
Confidence 467777555 9999999999999999999999999999998754 211110000 011000011112223344455555
Q ss_pred HhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch--h---HHHHHHH----HhccCCcCEEEeecC
Q 019214 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--A---AFDQAQA----FKQSVSVGAVIVTKM 250 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~--~---~~~~~~~----~~~~~~~~~lVinK~ 250 (344)
...+||++||||||..... ... ....+|.++.++.++... . ....... .+... ...+++|++
T Consensus 80 ~~~~yD~iiID~pp~~~~~------~~~--al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l-~~~iv~~~~ 150 (231)
T PRK13849 80 ELQGFDYALADTHGGSSEL------NNT--IIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAI-PTAILRQRV 150 (231)
T ss_pred hhCCCCEEEEeCCCCccHH------HHH--HHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCC-CeEEEEEec
Confidence 4457999999999976421 111 123479999888886531 1 1111111 12222 236899998
Q ss_pred CC
Q 019214 251 DG 252 (344)
Q Consensus 251 D~ 252 (344)
+.
T Consensus 151 ~~ 152 (231)
T PRK13849 151 PV 152 (231)
T ss_pred cc
Confidence 73
No 67
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.43 E-value=3.3e-13 Score=109.95 Aligned_cols=137 Identities=22% Similarity=0.253 Sum_probs=87.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
+.|+++|++|+|||||+++|- |...- +....-+.
T Consensus 2 krimliG~~g~GKTTL~q~L~------~~~~~-----------------~~KTq~i~----------------------- 35 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALN------GEEIR-----------------YKKTQAIE----------------------- 35 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHc------CCCCC-----------------cCccceeE-----------------------
Confidence 569999999999999999998 54321 00001111
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchh--HHHHHHHHhccCCcCEEEeecCCCCCCh---
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAFKQSVSVGAVIVTKMDGHAKG--- 256 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~--~~~~~~~~~~~~~~~~lVinK~D~~~~~--- 256 (344)
|.=.+|||||-.-....+...+ +..+..+|.++++.|++.... ....+..|.+ +.+=|+||+|.....
T Consensus 36 --~~~~~IDTPGEyiE~~~~y~aL--i~ta~dad~V~ll~dat~~~~~~pP~fa~~f~~---pvIGVITK~Dl~~~~~~i 108 (143)
T PF10662_consen 36 --YYDNTIDTPGEYIENPRFYHAL--IVTAQDADVVLLLQDATEPRSVFPPGFASMFNK---PVIGVITKIDLPSDDANI 108 (143)
T ss_pred --ecccEEECChhheeCHHHHHHH--HHHHhhCCEEEEEecCCCCCccCCchhhcccCC---CEEEEEECccCccchhhH
Confidence 1114699999654444444444 333457899999999987532 3344555543 346678999998332
Q ss_pred hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHh
Q 019214 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (344)
Q Consensus 257 ~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~ 309 (344)
......+...| ..+.+.+|+.+|+| +++|.+.|++
T Consensus 109 ~~a~~~L~~aG-----------------~~~if~vS~~~~eG-i~eL~~~L~~ 143 (143)
T PF10662_consen 109 ERAKKWLKNAG-----------------VKEIFEVSAVTGEG-IEELKDYLEE 143 (143)
T ss_pred HHHHHHHHHcC-----------------CCCeEEEECCCCcC-HHHHHHHHhC
Confidence 22233444322 12347789999999 9999988864
No 68
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.42 E-value=4.3e-13 Score=128.24 Aligned_cols=160 Identities=14% Similarity=0.094 Sum_probs=93.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHhC
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 182 (344)
-|+|+|.||||||||+|+|+ +.++ .|+. .+++|+.......... .
T Consensus 161 dValVG~PNaGKSTLln~Lt------~~k~-~vs~-----------~p~TT~~p~~Giv~~~-----------------~ 205 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVS------AAKP-KVAD-----------YPFTTLVPNLGVVRVD-----------------D 205 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHh------CCcc-cccC-----------CCCCccCcEEEEEEeC-----------------C
Confidence 48999999999999999999 7765 5565 5566654332211111 0
Q ss_pred CCCEEEEcCCCCCcchHH---HHHHHHHhhhhcCCcEEEEEEcCCc---c---hhHHHHHHHHhc-----cCCcCEEEee
Q 019214 183 NCDLIIVDTSGRHKQEAA---LFEEMRQVSEATNPDLVIFVMDSSI---G---QAAFDQAQAFKQ-----SVSVGAVIVT 248 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~---~~~~l~~~~~~~~~d~illvvda~~---~---~~~~~~~~~~~~-----~~~~~~lVin 248 (344)
...++|+||||+...... +...+ +.....+|.+++|+|++. . .+.......+.. ...+..+|+|
T Consensus 206 ~~~i~~vDtPGi~~~a~~~~~Lg~~~--l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlN 283 (390)
T PRK12298 206 ERSFVVADIPGLIEGASEGAGLGIRF--LKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFN 283 (390)
T ss_pred CcEEEEEeCCCccccccchhhHHHHH--HHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEe
Confidence 234899999998643211 22222 122345799999999872 1 111112222221 1245688999
Q ss_pred cCCCCCChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCC
Q 019214 249 KMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (344)
Q Consensus 249 K~D~~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~ 313 (344)
|+|+.... .....+.... + .+....+.+++|+.++.| +++|++.|.+.++.
T Consensus 284 KiDl~~~~-el~~~l~~l~---------~---~~~~~~~Vi~ISA~tg~G-IdeLl~~I~~~L~~ 334 (390)
T PRK12298 284 KIDLLDEE-EAEERAKAIV---------E---ALGWEGPVYLISAASGLG-VKELCWDLMTFIEE 334 (390)
T ss_pred CCccCChH-HHHHHHHHHH---------H---HhCCCCCEEEEECCCCcC-HHHHHHHHHHHhhh
Confidence 99986432 1111111100 0 001111356688899999 99999999887753
No 69
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.42 E-value=1.4e-12 Score=113.78 Aligned_cols=185 Identities=17% Similarity=0.236 Sum_probs=106.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcc--cCCc-ceeccCC-----CCCHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNAT--KAKI-PFYGSYT-----ESDPVRIA 172 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~--~~~v-~~~~~~~-----~~~~~~~~ 172 (344)
|..++++|++|+||||++.++...+.. ..++.++..|.+.....+.+...+- ...+ .+..... ..+.. ..
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~ 78 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALRQ-KYQLAVITNDIYTQEDAEFLVKNSALPPERILGVETGGCPHTAIREDAS-MN 78 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhCc-CCcEEEEeCCcCChhHHHHHHHcCCCCcCceehhhcCCCccceeccCHH-HH
Confidence 357999999999999999999987765 3568888888866443333332221 0111 0000000 11221 12
Q ss_pred HHHHHHHH--hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHHHH-HHHhccCCcCEEEeec
Q 019214 173 VEGVETFK--KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQA-QAFKQSVSVGAVIVTK 249 (344)
Q Consensus 173 ~~~l~~~~--~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~~~-~~~~~~~~~~~lVinK 249 (344)
..++..+. ..++|+++|+|.|...... ... .-.|.++.|+|+..+.+..... ..+ ...+.+|+||
T Consensus 79 ~~~L~~l~~~~~~~D~iiIEt~G~~l~~~-~~~--------~l~~~~i~vvD~~~~~~~~~~~~~qi---~~ad~~~~~k 146 (199)
T TIGR00101 79 LEAVAEMEARFPPLEMVFIESGGDNLSAT-FSP--------ELADLTIFVIDVAAGDKIPRKGGPGI---TRSDLLVINK 146 (199)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCCcccc-cch--------hhhCcEEEEEEcchhhhhhhhhHhHh---hhccEEEEEh
Confidence 33344432 2368999999999522110 001 1146799999998765432221 122 1235789999
Q ss_pred CCCCCChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 250 MDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 250 ~D~~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
+|.....+..+.... +.+..+.+..+.+.+|+++|+| +++++++|.+++.
T Consensus 147 ~d~~~~~~~~~~~~~------------~~~~~~~~~~~i~~~Sa~~g~g-i~el~~~i~~~~~ 196 (199)
T TIGR00101 147 IDLAPMVGADLGVME------------RDAKKMRGEKPFIFTNLKTKEG-LDTVIDWIEHYAL 196 (199)
T ss_pred hhccccccccHHHHH------------HHHHHhCCCCCEEEEECCCCCC-HHHHHHHHHhhcC
Confidence 999743221121111 1111223345567789999999 9999999988653
No 70
>PRK09866 hypothetical protein; Provisional
Probab=99.41 E-value=2.1e-12 Score=127.06 Aligned_cols=113 Identities=15% Similarity=0.103 Sum_probs=72.5
Q ss_pred CCCEEEEcCCCCCcchHH-HHHHHHHhhhhcCCcEEEEEEcCCcc--hhHHHHHHHHhccC--CcCEEEeecCCCCCChh
Q 019214 183 NCDLIIVDTSGRHKQEAA-LFEEMRQVSEATNPDLVIFVMDSSIG--QAAFDQAQAFKQSV--SVGAVIVTKMDGHAKGG 257 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~-~~~~l~~~~~~~~~d~illvvda~~~--~~~~~~~~~~~~~~--~~~~lVinK~D~~~~~~ 257 (344)
...++||||||+...... +.+.|.. ....+|.++||+|+..+ .........+.+.. .+..+|+||+|......
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~e--qL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dree 306 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQ--QLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRNS 306 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHH--HHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCccc
Confidence 478999999999765323 3334433 34568999999999864 33334444444332 26688999999864222
Q ss_pred ----hHHHHHHHhCCCeEEEecCCCC-CcCcCCChHHHHHHHhCCCChhHHHHHHHhh
Q 019214 258 ----GALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (344)
Q Consensus 258 ----~~~~~~~~~~~pv~~~~~g~~~-~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~ 310 (344)
.+...+.. .+ ....++...+++|++.|+| ++.|++.|...
T Consensus 307 ddkE~Lle~V~~------------~L~q~~i~f~eIfPVSAlkG~n-id~LLdeI~~~ 351 (741)
T PRK09866 307 DDADQVRALISG------------TLMKGCITPQQIFPVSSMWGYL-ANRARHELANN 351 (741)
T ss_pred chHHHHHHHHHH------------HHHhcCCCCceEEEEeCCCCCC-HHHHHHHHHhC
Confidence 22232211 00 1122456678899999999 99999999883
No 71
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.41 E-value=1e-12 Score=135.44 Aligned_cols=158 Identities=19% Similarity=0.297 Sum_probs=99.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
..|+++|.|||||||++++|. |.+.++++. .++.++..+......
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~------~~~~~iv~~-----------~pGvT~d~~~~~~~~------------------ 320 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRIL------GRREAVVED-----------TPGVTRDRVSYDAEW------------------ 320 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHh------CCCceeecC-----------CCCeeEEEEEEEEEE------------------
Confidence 579999999999999999999 888877776 333333322211111
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHHHH--hhhhcCCcEEEEEEcCCcchhH--HHHHHHHhccCCcCEEEeecCCCCCChh
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEMRQ--VSEATNPDLVIFVMDSSIGQAA--FDQAQAFKQSVSVGAVIVTKMDGHAKGG 257 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l~~--~~~~~~~d~illvvda~~~~~~--~~~~~~~~~~~~~~~lVinK~D~~~~~~ 257 (344)
.+..+.++||||.......+...+.. ......+|.+++|+|++.+... ......+.....+..+|+||+|......
T Consensus 321 ~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~ 400 (712)
T PRK09518 321 AGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEY 400 (712)
T ss_pred CCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchh
Confidence 25678899999976322222222221 2234478999999999875322 2344444444456789999999854321
Q ss_pred hHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCC
Q 019214 258 GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (344)
Q Consensus 258 ~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~ 313 (344)
.. ......+ +...+++|+.+|.| +++|+++|.+.++.
T Consensus 401 ~~-~~~~~lg-----------------~~~~~~iSA~~g~G-I~eLl~~i~~~l~~ 437 (712)
T PRK09518 401 DA-AEFWKLG-----------------LGEPYPISAMHGRG-VGDLLDEALDSLKV 437 (712)
T ss_pred hH-HHHHHcC-----------------CCCeEEEECCCCCC-chHHHHHHHHhccc
Confidence 11 1111111 11224689999999 99999999887754
No 72
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=99.41 E-value=1.9e-11 Score=104.85 Aligned_cols=157 Identities=17% Similarity=0.127 Sum_probs=86.0
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHh----hccc---CCcceecc-C-CCCCHHHHHHH
Q 019214 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQ----NATK---AKIPFYGS-Y-TESDPVRIAVE 174 (344)
Q Consensus 104 i~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~----~~~~---~~v~~~~~-~-~~~~~~~~~~~ 174 (344)
.+.-|++|+||||++.+||..+ ++|++||+|++++.....+.. +... .+...... . ...........
T Consensus 3 ~v~s~kgG~GKSt~a~nLA~~l----~~vlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (179)
T cd03110 3 AVISGKGGTGKTTVTAALAALL----KNVVLADCDVDAPNLHLFLKPEIEEEEDFIVGGKKAVIDPELCISCGLCGKLVT 78 (179)
T ss_pred EEEcCCCCCCHHHHHHHHHHHH----hCcEEEECCCCCCchhhhcCCCccccccceecCCceEEchhhhccccchHHHHH
Confidence 3444788999999999999998 799999999987654321110 0000 00000000 0 00000001111
Q ss_pred HHHHH-----HhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc--hhHHHHHHHHhccCCcCEEEe
Q 019214 175 GVETF-----KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QAAFDQAQAFKQSVSVGAVIV 247 (344)
Q Consensus 175 ~l~~~-----~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~--~~~~~~~~~~~~~~~~~~lVi 247 (344)
.+... ....||++||||||..... . . .....+|.+++|+.++.. .......+.+.......++|+
T Consensus 79 ~~~~~~~~~~~~~~~d~viiDtpp~~~~~--~---~---~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~ 150 (179)
T cd03110 79 EVRKHAKEIAKAEGAELIIIDGPPGIGCP--V---I---ASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVI 150 (179)
T ss_pred HHHHHHHHhhhhcCCCEEEEECcCCCcHH--H---H---HHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEE
Confidence 22221 1258999999998765321 1 1 112358999999998754 222223333332222348999
Q ss_pred ecCCCCCCh-hhHHHHHHHhCCCeEE
Q 019214 248 TKMDGHAKG-GGALSAVAATKSPVIF 272 (344)
Q Consensus 248 nK~D~~~~~-~~~~~~~~~~~~pv~~ 272 (344)
||+|..... ....+.+...+.|+..
T Consensus 151 N~~~~~~~~~~~~~~~~~~~~~~vl~ 176 (179)
T cd03110 151 NKYDLNDEIAEEIEDYCEEEGIPILG 176 (179)
T ss_pred eCCCCCcchHHHHHHHHHHcCCCeEE
Confidence 999986543 3344556666777653
No 73
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.40 E-value=2.7e-12 Score=110.27 Aligned_cols=181 Identities=15% Similarity=0.111 Sum_probs=95.0
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHhCC
Q 019214 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKEN 183 (344)
Q Consensus 104 i~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~ 183 (344)
|+++|.+|+||||++++|.......++...+.+....... .+ .....+....... +...+
T Consensus 2 v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~------------------~~~~~ 61 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLK-EE-RERGITIKSGVAT------------------FEWPD 61 (189)
T ss_pred EEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCH-HH-HHcCCCeecceEE------------------EeeCC
Confidence 7899999999999999999654433333333221111110 00 0111111100000 00125
Q ss_pred CCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch--hHHHHHHHHhccCCcCEEEeecCCCCCCh--hhH
Q 019214 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQSVSVGAVIVTKMDGHAKG--GGA 259 (344)
Q Consensus 184 ~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~--~~~~~~~~~~~~~~~~~lVinK~D~~~~~--~~~ 259 (344)
.+++|+||||........ ......+|.+++|+|++.+. ...+..........+..+|+||+|..... ...
T Consensus 62 ~~~~liDtpG~~~~~~~~------~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~ 135 (189)
T cd00881 62 RRVNFIDTPGHEDFSSEV------IRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEV 135 (189)
T ss_pred EEEEEEeCCCcHHHHHHH------HHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHH
Confidence 678999999975432211 11123689999999998652 22233333333334568899999997521 122
Q ss_pred HHHHHH-hCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 260 LSAVAA-TKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 260 ~~~~~~-~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
.+.+.. .+..-.....+..... ....+.+++|++.|.| ++++++++.+.++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~Sa~~g~g-i~~l~~~l~~~l~ 187 (189)
T cd00881 136 LREIKELLGLIGFISTKEEGTRN-GLLVPIVPGSALTGIG-VEELLEAIVEHLP 187 (189)
T ss_pred HHHHHHHHccccccchhhhhccc-CCcceEEEEecccCcC-HHHHHHHHHhhCC
Confidence 222211 1110000000000000 1234567789999999 9999999988775
No 74
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.40 E-value=2.4e-12 Score=112.68 Aligned_cols=154 Identities=19% Similarity=0.206 Sum_probs=87.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
..|+++|++||||||+++.+. +..+...+. + ..+..... ..... .
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~------~~~~~~~~~-~-----------~~t~~~~~-~~~~~----------------~ 86 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALT------GADVYAEDQ-L-----------FATLDPTT-RRLRL----------------P 86 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHh------cchhccCCc-c-----------ceecccee-EEEEe----------------c
Confidence 579999999999999999999 543221111 0 11110000 00000 0
Q ss_pred CCCCEEEEcCCCCCcc-hHHHHHHHHH-hhhhcCCcEEEEEEcCCcchhHH---HHHHHHhc---cCCcCEEEeecCCCC
Q 019214 182 ENCDLIIVDTSGRHKQ-EAALFEEMRQ-VSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQ---SVSVGAVIVTKMDGH 253 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~-~~~~~~~l~~-~~~~~~~d~illvvda~~~~~~~---~~~~~~~~---~~~~~~lVinK~D~~ 253 (344)
..+.+.++||||.... .......... ......+|.+++|+|++...... .....+.. ...+..+|+||+|..
T Consensus 87 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~ 166 (204)
T cd01878 87 DGREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLL 166 (204)
T ss_pred CCceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccC
Confidence 1347899999998432 1122222221 22244689999999998652211 11222221 123568899999986
Q ss_pred CChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhh
Q 019214 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (344)
Q Consensus 254 ~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~ 310 (344)
...... .... ....+.+.+|++.|.| ++++++.|.+.
T Consensus 167 ~~~~~~-~~~~------------------~~~~~~~~~Sa~~~~g-i~~l~~~L~~~ 203 (204)
T cd01878 167 DDEELE-ERLE------------------AGRPDAVFISAKTGEG-LDELLEAIEEL 203 (204)
T ss_pred ChHHHH-HHhh------------------cCCCceEEEEcCCCCC-HHHHHHHHHhh
Confidence 643221 1100 1123456789999999 99999988764
No 75
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.39 E-value=5.1e-13 Score=119.57 Aligned_cols=200 Identities=19% Similarity=0.186 Sum_probs=85.8
Q ss_pred EEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcc------hh-HH-------HHHhhcccCC-cceeccCCCCCHHH
Q 019214 106 FVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA------GA-FD-------QLKQNATKAK-IPFYGSYTESDPVR 170 (344)
Q Consensus 106 ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~------~~-~~-------~l~~~~~~~~-v~~~~~~~~~~~~~ 170 (344)
|+||+||||||++..+..++...|+++.+|..||... .- +. -++.+.-..+ .-++.........+
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~~y~~~iDird~i~~~evm~~~~LGPNGal~~~me~l~~~~d 80 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENLPYPPDIDIRDLISVEEVMEEYGLGPNGALIYCMEYLEENID 80 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--SS--SEEGGGT--HHHHHTT-T--HHHHHHHHHHHHGGGHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhcccccCchHHHHhhhhhhhhhhhcCcCCcHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999998321 10 11 1111000000 00000000001112
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhc---CCcEEEEEEcCCcchhHHHH-------HHHHhccC
Q 019214 171 IAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEAT---NPDLVIFVMDSSIGQAAFDQ-------AQAFKQSV 240 (344)
Q Consensus 171 ~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~---~~d~illvvda~~~~~~~~~-------~~~~~~~~ 240 (344)
.+.+.+... +.++++|||||...... ....+..+...+ ..-.+++++|+..-.+.... ...+.+..
T Consensus 81 ~l~~~i~~~---~~~y~l~DtPGQiElf~-~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~ 156 (238)
T PF03029_consen 81 WLDEEIEKY---EDDYLLFDTPGQIELFT-HSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLE 156 (238)
T ss_dssp HHHHHHHHH---H-SEEEEE--SSHHHHH-HSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhc---CCcEEEEeCCCCEEEEE-echhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCC
Confidence 223333333 34899999999853211 111122233222 23468899998754322221 11111222
Q ss_pred CcCEEEeecCCCCCCh-hhHHHHHHHh-------CCCeEEE--ecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhh
Q 019214 241 SVGAVIVTKMDGHAKG-GGALSAVAAT-------KSPVIFI--GTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (344)
Q Consensus 241 ~~~~lVinK~D~~~~~-~~~~~~~~~~-------~~pv~~~--~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~ 310 (344)
-|.+.|+||+|..... ...++..... ....... ...+-++++....+...+|+..++| +++|...|+++
T Consensus 157 lP~vnvlsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~-~~~L~~~id~a 235 (238)
T PF03029_consen 157 LPHVNVLSKIDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEG-MEELLAAIDKA 235 (238)
T ss_dssp SEEEEEE--GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTT-HHHHHHHHHHH
T ss_pred CCEEEeeeccCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHH-HHHHHHHHHHH
Confidence 3568899999998732 1111111000 0000000 0001122222222445677778888 88888888775
No 76
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.39 E-value=2.3e-12 Score=108.98 Aligned_cols=153 Identities=17% Similarity=0.196 Sum_probs=84.0
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCC-cceeccCCCCCHHHHHHHHHHHHHhC
Q 019214 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAK-IPFYGSYTESDPVRIAVEGVETFKKE 182 (344)
Q Consensus 104 i~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~-v~~~~~~~~~~~~~~~~~~l~~~~~~ 182 (344)
|+++|++||||||++++|. |.+. .++. .++++... +.... . .
T Consensus 3 v~ivG~~~~GKStl~~~l~------~~~~-~v~~-----------~~~~t~~~~~~~~~-~------------------~ 45 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAIS------NAKP-KIAD-----------YPFTTLVPNLGVVR-V------------------D 45 (170)
T ss_pred eEEECCCCCCHHHHHHHHh------cCCc-cccC-----------CCccccCCcceEEE-c------------------C
Confidence 8999999999999999998 6544 2222 11112111 10000 0 1
Q ss_pred CC-CEEEEcCCCCCcchH---HHHHHHHHhhhhcCCcEEEEEEcCCcc-hh---HHHHHHHHhc-----cCCcCEEEeec
Q 019214 183 NC-DLIIVDTSGRHKQEA---ALFEEMRQVSEATNPDLVIFVMDSSIG-QA---AFDQAQAFKQ-----SVSVGAVIVTK 249 (344)
Q Consensus 183 ~~-d~vlIDT~G~~~~~~---~~~~~l~~~~~~~~~d~illvvda~~~-~~---~~~~~~~~~~-----~~~~~~lVinK 249 (344)
++ .+.++||||...... .+.... +.....+|.+++|+|++.. .. .......+.. ...+..+|+||
T Consensus 46 ~~~~~~l~DtpG~~~~~~~~~~~~~~~--~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK 123 (170)
T cd01898 46 DGRSFVVADIPGLIEGASEGKGLGHRF--LRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNK 123 (170)
T ss_pred CCCeEEEEecCcccCcccccCCchHHH--HHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEc
Confidence 33 788999999742211 111111 1122357999999999865 11 1112222221 12455889999
Q ss_pred CCCCCChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhh
Q 019214 250 MDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (344)
Q Consensus 250 ~D~~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~ 310 (344)
+|+...... .+..... .... ...+.+.+|++.|.| ++++++.+.+.
T Consensus 124 ~Dl~~~~~~-~~~~~~~------------~~~~-~~~~~~~~Sa~~~~g-i~~l~~~i~~~ 169 (170)
T cd01898 124 IDLLDEEEL-FELLKEL------------LKEL-WGKPVFPISALTGEG-LDELLRKLAEL 169 (170)
T ss_pred hhcCCchhh-HHHHHHH------------HhhC-CCCCEEEEecCCCCC-HHHHHHHHHhh
Confidence 998654321 1111100 0000 112345678889999 99999888764
No 77
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=99.38 E-value=1.1e-11 Score=113.33 Aligned_cols=41 Identities=27% Similarity=0.245 Sum_probs=38.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcc
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~ 142 (344)
++|+|+|+.||||||++.+||..|++.|++|++||+||+..
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq~n 42 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPKAD 42 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCCCC
Confidence 56888899999999999999999999999999999999854
No 78
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.37 E-value=1.8e-12 Score=109.00 Aligned_cols=145 Identities=15% Similarity=0.144 Sum_probs=86.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
+.|+++|.+||||||++++|. |.... .. . ...+.+ .
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~------~~~~~--~~-----------~----~~~v~~----~----------------- 37 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQ------GNYTL--AR-----------K----TQAVEF----N----------------- 37 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHc------CCCcc--Cc-----------c----ceEEEE----C-----------------
Confidence 359999999999999999998 64321 00 0 001110 0
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH-HHHHHhccCCcCEEEeecCCCCCChhh-H
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD-QAQAFKQSVSVGAVIVTKMDGHAKGGG-A 259 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~-~~~~~~~~~~~~~lVinK~D~~~~~~~-~ 259 (344)
.. -++||||..........++. .....+|.+++|+|++.+..... ....+.. ..+..+++||+|....... .
T Consensus 38 -~~--~~iDtpG~~~~~~~~~~~~~--~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~-~~~ii~v~nK~Dl~~~~~~~~ 111 (158)
T PRK15467 38 -DK--GDIDTPGEYFSHPRWYHALI--TTLQDVDMLIYVHGANDPESRLPAGLLDIGV-SKRQIAVISKTDMPDADVAAT 111 (158)
T ss_pred -CC--CcccCCccccCCHHHHHHHH--HHHhcCCEEEEEEeCCCcccccCHHHHhccC-CCCeEEEEEccccCcccHHHH
Confidence 11 15899997544333433332 22447899999999986532211 1122211 2345788999998542211 1
Q ss_pred HHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCC
Q 019214 260 LSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (344)
Q Consensus 260 ~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~ 313 (344)
.+.+... ....|.+++|+++|+| +++|++.+.+....
T Consensus 112 ~~~~~~~----------------~~~~p~~~~Sa~~g~g-i~~l~~~l~~~~~~ 148 (158)
T PRK15467 112 RKLLLET----------------GFEEPIFELNSHDPQS-VQQLVDYLASLTKQ 148 (158)
T ss_pred HHHHHHc----------------CCCCCEEEEECCCccC-HHHHHHHHHHhchh
Confidence 2222211 1123566788999999 99999999887743
No 79
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=99.37 E-value=1.9e-11 Score=111.89 Aligned_cols=161 Identities=19% Similarity=0.155 Sum_probs=90.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhH-----------HHHHh------------h--cccCC
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAF-----------DQLKQ------------N--ATKAK 156 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~-----------~~l~~------------~--~~~~~ 156 (344)
++|+|.|+.||||||++.+||..|+++|++|++||+||+...+. +.+.. . .+..+
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dpq~~~t~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~ 82 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPKHDSTFTLTGKLVPTVIDILEEVDFHSEELRPEDFVYEGYNG 82 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeccCCcchhhhhcCCCCCcHHHHHHhccccccCCCHHHheeeCCCC
Confidence 68888899999999999999999999999999999999743221 11100 0 00123
Q ss_pred cceeccCCCC-----C--HHHHHHHHHHHH-HhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc-h
Q 019214 157 IPFYGSYTES-----D--PVRIAVEGVETF-KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG-Q 227 (344)
Q Consensus 157 v~~~~~~~~~-----~--~~~~~~~~l~~~-~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~-~ 227 (344)
+.+....... . ........++.+ ..++||++||||+|...... . ......+|.+++++.++.. .
T Consensus 83 l~~ip~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~yD~viIDt~g~~~~~~-~------~~~l~~AD~viip~~~~~~sl 155 (270)
T PRK13185 83 VDCVEAGGPPAGTGCGGYVVGETVKLLKEHHLLDDYDVILFDVLGDVVCGG-F------AAPLQYADYALIVTANDFDSI 155 (270)
T ss_pred cEEEECCCCCCCCCccchhHHHHHHHHHhcCccccCCEEEEecCCCcccCc-c------cchhhhCcEEEEEecCchhhH
Confidence 3333211100 0 001111122221 13479999999988643221 1 0112347899999887643 1
Q ss_pred ----hHHHHHHHH--hccCCcCEEEeecCCCCCChhhHHHHHHHhCCCeEE
Q 019214 228 ----AAFDQAQAF--KQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIF 272 (344)
Q Consensus 228 ----~~~~~~~~~--~~~~~~~~lVinK~D~~~~~~~~~~~~~~~~~pv~~ 272 (344)
...+..... +....+.++|+|+.+.. ....+.....+.|+..
T Consensus 156 ~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~~---~~~~~~~~~~g~~vl~ 203 (270)
T PRK13185 156 FAANRIAAAIQAKAKNYKVRLAGVIANRSAGT---DLIDKFNEAVGLKVLA 203 (270)
T ss_pred HHHHHHHHHHHhhhhccCCCceEEEEeccChH---HHHHHHHHHcCCCEEE
Confidence 112222211 22234567999998742 2233444556777653
No 80
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=99.37 E-value=8.3e-12 Score=114.52 Aligned_cols=41 Identities=24% Similarity=0.190 Sum_probs=38.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcc
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~ 142 (344)
++|+|+|+.||||||++.+||..|++.|++|++||+||+..
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~~G~rVLlID~Dpq~~ 42 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKAD 42 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHHCCCcEEEEecCCccc
Confidence 57888899999999999999999999999999999999754
No 81
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.36 E-value=5.8e-12 Score=124.31 Aligned_cols=186 Identities=18% Similarity=0.142 Sum_probs=111.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
..++++|.|||||||+.|+|+ |.+..+-+. .|+.+..... .+..
T Consensus 4 ~~valvGNPNvGKTtlFN~LT------G~~q~VgNw-----------------pGvTVEkkeg-------------~~~~ 47 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALT------GANQKVGNW-----------------PGVTVEKKEG-------------KLKY 47 (653)
T ss_pred ceEEEecCCCccHHHHHHHHh------ccCceecCC-----------------CCeeEEEEEE-------------EEEe
Confidence 459999999999999999999 877665554 3444432111 0112
Q ss_pred CCCCEEEEcCCCCCcchHHHHHH-H-HHhhhhcCCcEEEEEEcCCcchhHHHHHHHHhccCCcCEEEeecCCCCCChhhH
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEE-M-RQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGA 259 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~-l-~~~~~~~~~d~illvvda~~~~~~~~~~~~~~~~~~~~~lVinK~D~~~~~~~~ 259 (344)
.+.++-+||.||..+-.....+| . +.......+|.++-|+|++.-...+...-++.+...+..+++|++|++.+.|..
T Consensus 48 ~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLeRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ 127 (653)
T COG0370 48 KGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNLERNLYLTLQLLELGIPMILALNMIDEAKKRGIR 127 (653)
T ss_pred cCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchHHHHHHHHHHHHHcCCCeEEEeccHhhHHhcCCc
Confidence 36788999999985433222222 2 334444578999999999875444443334444334468889999998876644
Q ss_pred H---HHHHHhCCCeEEEe--cCCCCCcCcCC------ChHHHHHHHhCCCChhHHHHHHHhhCCCCchHHHHHHHhcC
Q 019214 260 L---SAVAATKSPVIFIG--TGEHMDEFEVF------DVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELLQKLSEG 326 (344)
Q Consensus 260 ~---~~~~~~~~pv~~~~--~g~~~~~l~~~------~~~~~is~~~g~g~i~~l~~~i~~~~~~~~~~~~~~~~~~~ 326 (344)
. ......|.||..++ .|++++++... .+....+-..|+. +++.++++. .+. +..+|++-+++++
T Consensus 128 ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~~~~~~~~~~~~~y~~~-ie~~i~~l~-~~~-~~~r~lai~lL~~ 202 (653)
T COG0370 128 IDIEKLSKLLGVPVVPTVAKRGEGLEELKRAIIELAESKTTPREVDYGEE-IEEEIKELE-ALS-EDPRWLAIKLLED 202 (653)
T ss_pred ccHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhccccccccccccchH-HHHHHHHHH-hhc-chhHHHHHHHhcC
Confidence 3 33455899999887 55554432210 0000111112333 566666666 332 2237777777753
No 82
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=99.36 E-value=4.2e-11 Score=104.96 Aligned_cols=145 Identities=21% Similarity=0.224 Sum_probs=87.8
Q ss_pred CeEEEEEcC-CCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHH---------Hhh-------------cccCCc
Q 019214 101 PSVIMFVGL-QGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQL---------KQN-------------ATKAKI 157 (344)
Q Consensus 101 ~~ii~ivG~-~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l---------~~~-------------~~~~~v 157 (344)
.++|+|++. +|+||||++.+||..+++.|++|++||.|++.+.....+ ..+ ....++
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~l~~~i~~~~~~~l 96 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRNSVMSGTFKSQNKITGLTNFLSGTTDLSDAICDTNIENL 96 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCChhHHHHhCCCCCCCCHHHHhcCCCCHHHhcccCCCCCE
Confidence 578888854 599999999999999999999999999998765422111 000 011233
Q ss_pred ceeccCC-CCCHHH-----HHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc-h-hH
Q 019214 158 PFYGSYT-ESDPVR-----IAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG-Q-AA 229 (344)
Q Consensus 158 ~~~~~~~-~~~~~~-----~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~-~-~~ 229 (344)
.+..... ..++.. .+.+.+..+ ...||+||||||+........ .+ ...+|.+++|+++... . ..
T Consensus 97 ~~l~~g~~~~~~~~~l~~~~l~~~l~~l-~~~yD~ViiD~pp~~~~~~~~-----~~--~~~~D~vilV~~~~~~~~~~~ 168 (204)
T TIGR01007 97 FVITSGPVPPNPTELLQSSNFKTLIETL-RKYFDYIIIDTPPIGTVTDAA-----II--ARACDASILVTDAGEIKKRDV 168 (204)
T ss_pred EEEeCCCCCCCHHHHhCcHHHHHHHHHH-HhcCCEEEEeCCCccccchHH-----HH--HHhCCeEEEEEECCCCCHHHH
Confidence 3332211 122222 123444445 358999999999854322111 01 1237999999998754 2 22
Q ss_pred HHHHHHHhc-cCCcCEEEeecCCCC
Q 019214 230 FDQAQAFKQ-SVSVGAVIVTKMDGH 253 (344)
Q Consensus 230 ~~~~~~~~~-~~~~~~lVinK~D~~ 253 (344)
......+.. ...+.++|+||.|..
T Consensus 169 ~~~~~~l~~~~~~~~gvVlN~~~~~ 193 (204)
T TIGR01007 169 QKAKEQLEQTGSNFLGVVLNKVDIS 193 (204)
T ss_pred HHHHHHHHhCCCCEEEEEEeCcccc
Confidence 223333332 235679999999864
No 83
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=99.36 E-value=3.7e-11 Score=108.49 Aligned_cols=142 Identities=14% Similarity=0.217 Sum_probs=82.5
Q ss_pred EEEEE-cCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchh------------HHHHHhh---------cccCCccee
Q 019214 103 VIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA------------FDQLKQN---------ATKAKIPFY 160 (344)
Q Consensus 103 ii~iv-G~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~------------~~~l~~~---------~~~~~v~~~ 160 (344)
+|+|+ +++||||||++.+||..|++.|++|++||+|++.... +..+... ....++.+.
T Consensus 2 ii~v~~~KGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 81 (251)
T TIGR01969 2 IITIASGKGGTGKTTITANLGVALAKLGKKVLALDADITMANLELILGMEDKPVTLHDVLAGEADIKDAIYEGPFGVKVI 81 (251)
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCccceeEeCCCCCCCCHHHHhcCCCCHHHheEeCCCCEEEE
Confidence 56776 6669999999999999999999999999999953221 1111000 011233322
Q ss_pred ccCCCCC-----HHHHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch--hHHHHH
Q 019214 161 GSYTESD-----PVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQA 233 (344)
Q Consensus 161 ~~~~~~~-----~~~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~--~~~~~~ 233 (344)
....... ....+.+.+..+. .+||+|||||||..... . . .....+|.+++|++++... +.....
T Consensus 82 p~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~VIiD~p~~~~~~--~---~---~~l~~ad~vliv~~~~~~s~~~~~~~~ 152 (251)
T TIGR01969 82 PAGVSLEGLRKADPDKLEDVLKEII-DDTDFLLIDAPAGLERD--A---V---TALAAADELLLVVNPEISSITDALKTK 152 (251)
T ss_pred eCCCCHHHHhhcCHHHHHHHHHHHH-hhCCEEEEeCCCccCHH--H---H---HHHHhCCeEEEEECCCCchHHHHHHHH
Confidence 2111100 1122334454443 47999999998865422 1 1 1122478999999987542 222222
Q ss_pred HHHhc-cCCcCEEEeecCCCC
Q 019214 234 QAFKQ-SVSVGAVIVTKMDGH 253 (344)
Q Consensus 234 ~~~~~-~~~~~~lVinK~D~~ 253 (344)
..... .....++|+|+++..
T Consensus 153 ~~~~~~~~~~~~vv~N~~~~~ 173 (251)
T TIGR01969 153 IVAEKLGTAILGVVLNRVTRD 173 (251)
T ss_pred HHHHhcCCceEEEEEECCCch
Confidence 21211 234468999999874
No 84
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=99.35 E-value=3.1e-11 Score=111.41 Aligned_cols=159 Identities=16% Similarity=0.186 Sum_probs=89.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhH-----------HHHHh--------------hcccCCcc
Q 019214 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAF-----------DQLKQ--------------NATKAKIP 158 (344)
Q Consensus 104 i~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~-----------~~l~~--------------~~~~~~v~ 158 (344)
|++.|+.||||||++.+||..|++.|++|++||+||+..... +-+.. .....++.
T Consensus 3 ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ~n~t~~l~g~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~l~ 82 (290)
T CHL00072 3 LAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPKHDSTFTLTGFLIPTIIDTLQSKDYHYEDVWPEDVIYKGYGGVD 82 (290)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCCCcccccccCcCCCCHHHHHhhcccccccCChhheEEeCCCCeE
Confidence 899999999999999999999999999999999999754321 00100 00012333
Q ss_pred eeccCCCCC-------HHHHHHHHHHHHHh-CCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch--h
Q 019214 159 FYGSYTESD-------PVRIAVEGVETFKK-ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--A 228 (344)
Q Consensus 159 ~~~~~~~~~-------~~~~~~~~l~~~~~-~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~--~ 228 (344)
+........ ........++.+.. .+||+|+|||+|..... .+ ......+|.++++++++... .
T Consensus 83 lip~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~yD~IiIDt~~~l~~~-a~------~aal~~AD~viIp~~p~~~sl~~ 155 (290)
T CHL00072 83 CVEAGGPPAGAGCGGYVVGETVKLLKELNAFYEYDIILFDVLGDVVCG-GF------AAPLNYADYCIIITDNGFDALFA 155 (290)
T ss_pred EEeCCCCCCccchhhcccHHHHHHHHHhhccccCCEEEEecCCcceec-hh------hhhhhcCCEEEEEecCCHHHHHH
Confidence 332111110 00000111222221 37999999998864221 11 01123579999999887531 1
Q ss_pred ---HHHHHHHHhc--cCCcCEEEeecCCCCCChhhHHHHHHHhCCCeEE
Q 019214 229 ---AFDQAQAFKQ--SVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIF 272 (344)
Q Consensus 229 ---~~~~~~~~~~--~~~~~~lVinK~D~~~~~~~~~~~~~~~~~pv~~ 272 (344)
..+....... .....++|+|+.+... .........+.|+..
T Consensus 156 ~~~l~~~i~~~~~~~~l~~~gvv~n~~~~~~---~~~~~~~~~~~~vl~ 201 (290)
T CHL00072 156 ANRIAASVREKARTHPLRLAGLVGNRTSKRD---LIDKYVEACPMPVLE 201 (290)
T ss_pred HHHHHHHHHHHhccCCCceEEEEEeCCCchh---HHHHHHHHcCCceEE
Confidence 1222222221 2345679999998432 223344556666554
No 85
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=99.35 E-value=2.2e-11 Score=111.25 Aligned_cols=160 Identities=19% Similarity=0.190 Sum_probs=89.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchh-----------HHHHHh--------------hcccCCc
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA-----------FDQLKQ--------------NATKAKI 157 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~-----------~~~l~~--------------~~~~~~v 157 (344)
+|+|.|+.||||||++.+||..|+++|++|++||+||+.... .+.+.. .....++
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l 81 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPKHDSTFTLTGFLIPTVIDILEEVDFHYEELWPEDVIYEGYGGV 81 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecCCCCCcceeccCCCCCCHHHHHHhccccccCCChhheEEECCCCc
Confidence 578889999999999999999999999999999999964221 111100 0011234
Q ss_pred ceeccCCCCC------H-HHHHHHHHHHH-HhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc--h
Q 019214 158 PFYGSYTESD------P-VRIAVEGVETF-KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--Q 227 (344)
Q Consensus 158 ~~~~~~~~~~------~-~~~~~~~l~~~-~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~--~ 227 (344)
.+........ . .......++.+ ....||++||||||...... . ......+|.+++++.++.. .
T Consensus 82 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~vIIDt~g~~~~~~-~------~~al~~aD~vlip~~p~~~~l~ 154 (267)
T cd02032 82 DCVEAGGPPAGAGCGGYVVGETVKLLKELNLFEEYDVILFDVLGDVVCGG-F------AAPLNYADYALIVTDNDFDSIF 154 (267)
T ss_pred EEEEcCCCCCCccccchHHHHHHHHHHHccccccCCEEEEeCCCCccccc-c------hhhhhhcCEEEEEecCCcccHH
Confidence 4332211100 0 00011112222 13479999999988643210 0 0112358999999988753 1
Q ss_pred h---HHHHHHHH--hccCCcCEEEeecCCCCCChhhHHHHHHHhCCCeEE
Q 019214 228 A---AFDQAQAF--KQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIF 272 (344)
Q Consensus 228 ~---~~~~~~~~--~~~~~~~~lVinK~D~~~~~~~~~~~~~~~~~pv~~ 272 (344)
. ..+..... .......++|+|+++... .........+.|+..
T Consensus 155 ~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~~~---~i~~~~~~~~~~vl~ 201 (267)
T cd02032 155 AANRIAAAVREKAKTYKVRLAGLIANRTDKTD---LIDKFVEAVGMPVLA 201 (267)
T ss_pred HHHHHHHHHHHHhhccCCceEEEEEeCCCHHH---HHHHHHHhCCCCEEE
Confidence 1 12222222 122344578999998532 223344456777653
No 86
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.35 E-value=4.7e-12 Score=111.75 Aligned_cols=208 Identities=20% Similarity=0.235 Sum_probs=112.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCc------ch--------hHHHHHhhcccCCcceeccCC
Q 019214 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR------AG--------AFDQLKQNATKAKIPFYGSYT 164 (344)
Q Consensus 99 ~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~------~~--------~~~~l~~~~~~~~v~~~~~~~ 164 (344)
+++.+|+++|..|+||||++.+|..++...+....+|..||.- .. -.+.++.|.-..+-.+ .+
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI---~T 93 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGI---VT 93 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcch---hh
Confidence 3567899999999999999999999999988899999999821 10 0133444433222211 11
Q ss_pred CCCHHHHHHH----HHHHHHhCCCCEEEEcCCCCCcchH--HHHHHHHHhhhhcCCcEEEEEEcCCcch-------hHHH
Q 019214 165 ESDPVRIAVE----GVETFKKENCDLIIVDTSGRHKQEA--ALFEEMRQVSEATNPDLVIFVMDSSIGQ-------AAFD 231 (344)
Q Consensus 165 ~~~~~~~~~~----~l~~~~~~~~d~vlIDT~G~~~~~~--~~~~~l~~~~~~~~~d~illvvda~~~~-------~~~~ 231 (344)
..+....-.+ .+++ +.+.+++++|||||....-. ....-+..-.+..-+-.+.+|+|..... +.+-
T Consensus 94 sLNLF~tk~dqv~~~iek-~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlY 172 (366)
T KOG1532|consen 94 SLNLFATKFDQVIELIEK-RAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLY 172 (366)
T ss_pred hHHHHHHHHHHHHHHHHH-hhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHH
Confidence 1111111111 1222 23468999999999732110 0000122223334577899999975431 1122
Q ss_pred HHHHHhccCCcCEEEeecCCCCCChhhHHHHHHHh-------C-CCeEEEecC-CC----CCcCcCCChHHHHHHHhCCC
Q 019214 232 QAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVAAT-------K-SPVIFIGTG-EH----MDEFEVFDVKPFVSRLLGMG 298 (344)
Q Consensus 232 ~~~~~~~~~~~~~lVinK~D~~~~~~~~~~~~~~~-------~-~pv~~~~~g-~~----~~~l~~~~~~~~is~~~g~g 298 (344)
....+.+..-+.++++||.|..... ...+++..+ + .--.|+++- .. ++++...-...-+|+.+|+|
T Consensus 173 AcSilyktklp~ivvfNK~Dv~d~~-fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G 251 (366)
T KOG1532|consen 173 ACSILYKTKLPFIVVFNKTDVSDSE-FALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEG 251 (366)
T ss_pred HHHHHHhccCCeEEEEecccccccH-HHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCc
Confidence 2222223223458899999987653 222322110 0 011111100 00 01111112234468999999
Q ss_pred ChhHHHHHHHhhCC
Q 019214 299 DWSGFMDKIHEVVP 312 (344)
Q Consensus 299 ~i~~l~~~i~~~~~ 312 (344)
+++++..+.+.++
T Consensus 252 -~ddf~~av~~~vd 264 (366)
T KOG1532|consen 252 -FDDFFTAVDESVD 264 (366)
T ss_pred -HHHHHHHHHHHHH
Confidence 9999999888764
No 87
>CHL00175 minD septum-site determining protein; Validated
Probab=99.35 E-value=9.3e-11 Score=107.94 Aligned_cols=146 Identities=17% Similarity=0.184 Sum_probs=84.6
Q ss_pred CCeEEEEE-cCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHH--------------HHhh----------ccc
Q 019214 100 KPSVIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQ--------------LKQN----------ATK 154 (344)
Q Consensus 100 ~~~ii~iv-G~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~--------------l~~~----------~~~ 154 (344)
..++|+|+ |.+||||||++.+||..|++.|++|++||+|++....... +... ...
T Consensus 14 ~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~~~~~l~~~lg~~~~~~~~~~d~l~~~~~l~~~~~~~~~~ 93 (281)
T CHL00175 14 MSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLDLLLGLENRVLYTAMDVLEGECRLDQALIRDKRW 93 (281)
T ss_pred CceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCCChhhhcCCCCCCCCCHHHHHcCCCChhhheeecCCC
Confidence 34788888 5779999999999999999999999999999964321110 0000 001
Q ss_pred CCcceeccCCCCCH----HHHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc--hh
Q 019214 155 AKIPFYGSYTESDP----VRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QA 228 (344)
Q Consensus 155 ~~v~~~~~~~~~~~----~~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~--~~ 228 (344)
.++.+......... ...+.+.+..+....||+||||||+..... . ... ...+|.+++|++++.. ..
T Consensus 94 ~~l~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~VIiDtpp~~~~~--~---~~~---l~~aD~viiV~~p~~~si~~ 165 (281)
T CHL00175 94 KNLSLLAISKNRQRYNVTRKNMNMLVDSLKNRGYDYILIDCPAGIDVG--F---INA---IAPAQEAIVVTTPEITAIRD 165 (281)
T ss_pred CCeEEEeCCCchhhccCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCHH--H---HHH---HHhcCeeEEEcCCChHHHHH
Confidence 22222221111111 112334445554437999999998865322 1 111 1247889999988753 22
Q ss_pred HHHHHHHHhcc-CCcCEEEeecCCCC
Q 019214 229 AFDQAQAFKQS-VSVGAVIVTKMDGH 253 (344)
Q Consensus 229 ~~~~~~~~~~~-~~~~~lVinK~D~~ 253 (344)
.......+... ....++|+|+++..
T Consensus 166 ~~~~~~~l~~~~~~~~~lvvN~~~~~ 191 (281)
T CHL00175 166 ADRVAGLLEANGIYNVKLLVNRVRPD 191 (281)
T ss_pred HHHHHHHHHHcCCCceEEEEeccChh
Confidence 22222322221 22347899999864
No 88
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.35 E-value=9.7e-12 Score=104.84 Aligned_cols=161 Identities=20% Similarity=0.149 Sum_probs=88.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHhC
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 182 (344)
+|+++|.+||||||++++|. +.++..... ...+. ........... ..
T Consensus 2 ~i~iiG~~~~GKtsli~~l~------~~~~~~~~~------------~~~t~-~~~~~~~~~~~--------------~~ 48 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIR------KTNVAAGEA------------GGITQ-HIGAFEVPAEV--------------LK 48 (168)
T ss_pred EEEEEecCCCCHHHHHHHHH------hcccccccC------------CCeEE-eeccEEEeccc--------------CC
Confidence 58999999999999999998 433322110 00000 00000000000 02
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc--hhHHHHHHHHhccCCcCEEEeecCCCCCCh-hhH
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QAAFDQAQAFKQSVSVGAVIVTKMDGHAKG-GGA 259 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~--~~~~~~~~~~~~~~~~~~lVinK~D~~~~~-~~~ 259 (344)
++++.++||||..... .+.. .....+|.+++|+|++.+ .........+.....+..+|+||+|..... ...
T Consensus 49 ~~~~~iiDtpG~~~~~-----~~~~-~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~ 122 (168)
T cd01887 49 IPGITFIDTPGHEAFT-----NMRA-RGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERV 122 (168)
T ss_pred cceEEEEeCCCcHHHH-----HHHH-HHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccHHHH
Confidence 6788999999974321 1111 112358999999999864 222222333332233458889999986432 122
Q ss_pred HHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 260 LSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 260 ~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
...+........ .......+.+.+|+..|+| +++|+++|.+..
T Consensus 123 ~~~~~~~~~~~~--------~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 165 (168)
T cd01887 123 KNELSELGLQGE--------DEWGGDVQIVPTSAKTGEG-IDDLLEAILLLA 165 (168)
T ss_pred HHHHHHhhcccc--------ccccCcCcEEEeecccCCC-HHHHHHHHHHhh
Confidence 222222111000 0111123456789999999 999999988764
No 89
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=99.34 E-value=1.5e-11 Score=112.78 Aligned_cols=41 Identities=29% Similarity=0.234 Sum_probs=38.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcc
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~ 142 (344)
++|+|+|+.||||||++.+||..|++.|++|++||+||+..
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La~~G~rVllvD~Dpq~~ 42 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALSTMGNKILLVGCDPKAD 42 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHhhCCCeEEEecccccc
Confidence 57888899999999999999999999999999999999754
No 90
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.34 E-value=7.4e-13 Score=114.61 Aligned_cols=173 Identities=18% Similarity=0.202 Sum_probs=94.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccE------EeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPA------LVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVE 174 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~------iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~ 174 (344)
.+.|+++|+.|+|||||+.+|..........-. ..+.. .+......+. ........
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~------~~e~~~~~ti-~~~~~~~~----------- 64 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKH------PEERERGITI-DLSFISFE----------- 64 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSS------HHHHHCTSSS-SSEEEEEE-----------
T ss_pred EEEEEEECCCCCCcEeechhhhhhcccccccccccccccccccc------chhhhccccc-cccccccc-----------
Confidence 368999999999999999999965532111000 00000 0000111111 11101100
Q ss_pred HHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch--hHHHHHHHHhccCCcCEEEeecCCC
Q 019214 175 GVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQSVSVGAVIVTKMDG 252 (344)
Q Consensus 175 ~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~--~~~~~~~~~~~~~~~~~lVinK~D~ 252 (344)
....++.+.||||||... +..++.. ....+|.+++|+|+..+. ...+..........+..+++||+|.
T Consensus 65 ----~~~~~~~i~~iDtPG~~~----f~~~~~~--~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~ 134 (188)
T PF00009_consen 65 ----KNENNRKITLIDTPGHED----FIKEMIR--GLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDL 134 (188)
T ss_dssp ----BTESSEEEEEEEESSSHH----HHHHHHH--HHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTS
T ss_pred ----ccccccceeecccccccc----eeecccc--eecccccceeeeecccccccccccccccccccccceEEeeeeccc
Confidence 002367889999999742 3333322 234689999999998763 2233333333322336888999999
Q ss_pred CCC-hhhHHHHHH-HhCCCeEEEecCCCCCcCc--CCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 253 HAK-GGGALSAVA-ATKSPVIFIGTGEHMDEFE--VFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 253 ~~~-~~~~~~~~~-~~~~pv~~~~~g~~~~~l~--~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
... .....+.+. .. + +.. ... ...|.+++|+++|.| ++.|++.+.+.+|
T Consensus 135 ~~~~~~~~~~~~~~~l------~---~~~-~~~~~~~~~vi~~Sa~~g~g-i~~Ll~~l~~~~P 187 (188)
T PF00009_consen 135 IEKELEEIIEEIKEKL------L---KEY-GENGEEIVPVIPISALTGDG-IDELLEALVELLP 187 (188)
T ss_dssp SHHHHHHHHHHHHHHH------H---HHT-TSTTTSTEEEEEEBTTTTBT-HHHHHHHHHHHS-
T ss_pred hhhhHHHHHHHHHHHh------c---ccc-ccCccccceEEEEecCCCCC-HHHHHHHHHHhCc
Confidence 822 112222221 11 0 000 001 134577889999999 9999999998876
No 91
>PRK11670 antiporter inner membrane protein; Provisional
Probab=99.34 E-value=5.5e-11 Score=113.17 Aligned_cols=148 Identities=15% Similarity=0.131 Sum_probs=85.3
Q ss_pred CCeEEEEE-cCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHH--h-hcc-cCC---cceeccC--------
Q 019214 100 KPSVIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLK--Q-NAT-KAK---IPFYGSY-------- 163 (344)
Q Consensus 100 ~~~ii~iv-G~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~--~-~~~-~~~---v~~~~~~-------- 163 (344)
..++|+|+ |++||||||++.+||..|++.|++|+++|+|++.+.....+. . ... ..+ .|+....
T Consensus 106 ~~~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVlLID~D~qgps~~~~lg~~~~~~~~~~~~~i~p~~~~g~~~~~~~~ 185 (369)
T PRK11670 106 VKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAEDQRPTSPDGTHMAPIMAHGLATNSIGY 185 (369)
T ss_pred CCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCCCcchhcCCcccCCcccCCceeeeeeccCcccccHHH
Confidence 34778877 888999999999999999999999999999998875422121 0 000 000 0100000
Q ss_pred ----------CCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc--hhHHH
Q 019214 164 ----------TESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QAAFD 231 (344)
Q Consensus 164 ----------~~~~~~~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~--~~~~~ 231 (344)
.+......+.+.+......+|||+|||||+... +..+ .+.....+|.+++|..+... .+...
T Consensus 186 l~~~~~~~i~~g~~~~~~l~~~l~~~~~~~yDyvIID~PPg~g-d~~l-----~~~~l~aad~viiV~tp~~~s~~da~~ 259 (369)
T PRK11670 186 LVTDDNAMVWRGPMASKALMQMLQETLWPDLDYLVLDMPPGTG-DIQL-----TLAQNIPVTGAVVVTTPQDIALIDAKK 259 (369)
T ss_pred hcCcCcceeecCcchHHHHHHHHHHHhhccCCEEEEeCCCCCc-hHHH-----HHhhhccCCeEEEEecCchhHHHHHHH
Confidence 000011222333322224579999999977532 2111 12223346888888877542 23333
Q ss_pred HHHHHhc-cCCcCEEEeecCCCC
Q 019214 232 QAQAFKQ-SVSVGAVIVTKMDGH 253 (344)
Q Consensus 232 ~~~~~~~-~~~~~~lVinK~D~~ 253 (344)
....+.+ ..++.++|.|+.+..
T Consensus 260 ~i~~~~~~~~~ilGiV~Nm~~~~ 282 (369)
T PRK11670 260 GIVMFEKVEVPVLGIVENMSMHI 282 (369)
T ss_pred HHHHHhccCCCeEEEEEcCCccc
Confidence 3344432 345678999998754
No 92
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.34 E-value=4.5e-12 Score=108.74 Aligned_cols=118 Identities=19% Similarity=0.202 Sum_probs=65.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCc-cEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWK-PALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~-v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 178 (344)
+...|+++|.+||||||++++|. +.+ +..++. ....+. .+..+..
T Consensus 17 ~~~~i~ivG~~~~GKStlin~l~------~~~~~~~~~~-----------~~~~t~-~~~~~~~---------------- 62 (179)
T TIGR03598 17 DGPEIAFAGRSNVGKSSLINALT------NRKKLARTSK-----------TPGRTQ-LINFFEV---------------- 62 (179)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHh------CCCCcccccC-----------CCCcce-EEEEEEe----------------
Confidence 44678999999999999999998 553 333322 111111 1111110
Q ss_pred HHhCCCCEEEEcCCCCCcch------HHHHHHHHHhhh-hcCCcEEEEEEcCCcchh--HHHHHHHHhccCCcCEEEeec
Q 019214 179 FKKENCDLIIVDTSGRHKQE------AALFEEMRQVSE-ATNPDLVIFVMDSSIGQA--AFDQAQAFKQSVSVGAVIVTK 249 (344)
Q Consensus 179 ~~~~~~d~vlIDT~G~~~~~------~~~~~~l~~~~~-~~~~d~illvvda~~~~~--~~~~~~~~~~~~~~~~lVinK 249 (344)
+..++++||||..... ..+...+..... ....+.+++|+|++.+.. .......+.....+..+|+||
T Consensus 63 ----~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK 138 (179)
T TIGR03598 63 ----NDGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTK 138 (179)
T ss_pred ----CCcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEC
Confidence 1257899999974321 111111112222 224578999999986422 222233333333445788999
Q ss_pred CCCCCC
Q 019214 250 MDGHAK 255 (344)
Q Consensus 250 ~D~~~~ 255 (344)
+|....
T Consensus 139 ~D~~~~ 144 (179)
T TIGR03598 139 ADKLKK 144 (179)
T ss_pred cccCCH
Confidence 998643
No 93
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=99.34 E-value=7e-12 Score=108.62 Aligned_cols=141 Identities=21% Similarity=0.218 Sum_probs=83.3
Q ss_pred EEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHH------HHhhcc-----cCCcceeccCCC--CCHHHH
Q 019214 105 MFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQ------LKQNAT-----KAKIPFYGSYTE--SDPVRI 171 (344)
Q Consensus 105 ~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~------l~~~~~-----~~~v~~~~~~~~--~~~~~~ 171 (344)
+.-+.+||||||++.+||..++++|++|+++|+|++.+...-. +..... ...+........ ......
T Consensus 3 v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (195)
T PF01656_consen 3 VTSGKGGVGKTTIAANLAQALARKGKKVLLIDLDPQAPNLSILFGVYDILREGLENANAILKNFESQDIYQGEEYLDPEL 82 (195)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTSHHHHHHTTCHHHHTTSSHGHHCHHESCCHHHHHHHCHCHHHHH
T ss_pred EEcCCCCccHHHHHHHHHhccccccccccccccCcccccHHHHhcchhhccccceehhhhhhccchhhhhhhhhhhHHHH
Confidence 3446779999999999999999999999999999987654211 111000 000000000000 011233
Q ss_pred HHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch--hHHH---HHHHHhccCCcCEEE
Q 019214 172 AVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFD---QAQAFKQSVSVGAVI 246 (344)
Q Consensus 172 ~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~--~~~~---~~~~~~~~~~~~~lV 246 (344)
..+.+..+....||++|||||+..... .. .....+|.++++++++... .... .+..+....+..++|
T Consensus 83 l~~~l~~l~~~~yD~iiiD~~~~~~~~------~~--~~l~~ad~viv~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~vv 154 (195)
T PF01656_consen 83 LREILESLIKSDYDYIIIDTPPGLSDP------VR--NALAAADYVIVPIEPDPSSIEGAERLIELLKRLGKKLKIIGVV 154 (195)
T ss_dssp HHHHHHHHHHTTSSEEEEEECSSSSHH------HH--HHHHTSSEEEEEEESSHHHHHHHHHHHHHHHHHTHTEEEEEEE
T ss_pred HHHHHHHhhhccccceeecccccccHH------HH--HHHHhCceeeeecCCcHHHHHHHHHHHHHHHHhccccceEEEE
Confidence 455566655556999999998865433 11 1123589999999987531 1122 222222222356899
Q ss_pred eecCCCC
Q 019214 247 VTKMDGH 253 (344)
Q Consensus 247 inK~D~~ 253 (344)
+||++..
T Consensus 155 ~N~v~~~ 161 (195)
T PF01656_consen 155 INRVDPG 161 (195)
T ss_dssp EEEETSC
T ss_pred EeeeCCC
Confidence 9999876
No 94
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.33 E-value=1.7e-11 Score=109.47 Aligned_cols=154 Identities=16% Similarity=0.183 Sum_probs=88.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCc-----cEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHH
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWK-----PALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGV 176 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~-----v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l 176 (344)
..++++|++|+||||++++++ |.. ...++..|.+.....+...|......+. ....++ ..+...+
T Consensus 27 p~i~vvG~~~~GKSt~l~~i~------g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~---~~~~~~-~~v~~~i 96 (240)
T smart00053 27 PQIAVVGGQSAGKSSVLENFV------GRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKG---KKFTDF-DEVRNEI 96 (240)
T ss_pred CeEEEEcCCCccHHHHHHHHh------CCCccccCCCcccccceEEEccCCCCcceEEEecCC---cccCCH-HHHHHHH
Confidence 369999999999999999999 543 2345555544433332233333322211 111122 2222222
Q ss_pred HHHH---------------------hCCCCEEEEcCCCCCcc-----hHHHHHHHHHhh-hh-c-CCcEEEEEEcCCcc-
Q 019214 177 ETFK---------------------KENCDLIIVDTSGRHKQ-----EAALFEEMRQVS-EA-T-NPDLVIFVMDSSIG- 226 (344)
Q Consensus 177 ~~~~---------------------~~~~d~vlIDT~G~~~~-----~~~~~~~l~~~~-~~-~-~~d~illvvda~~~- 226 (344)
.... ..-+++.+|||||+... .......+..+. .. . ..+.+++|+|+..+
T Consensus 97 ~~~~~~~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~ 176 (240)
T smart00053 97 EAETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDL 176 (240)
T ss_pred HHHHHHhcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCC
Confidence 2211 11388999999998632 122323333322 12 2 34589999998764
Q ss_pred --hhHHHHHHHHhccCCcCEEEeecCCCCCChhhHHHHHHH
Q 019214 227 --QAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVAA 265 (344)
Q Consensus 227 --~~~~~~~~~~~~~~~~~~lVinK~D~~~~~~~~~~~~~~ 265 (344)
.+..+.++.+........+|+||+|.........+.+..
T Consensus 177 ~~~d~l~ia~~ld~~~~rti~ViTK~D~~~~~~~~~~~~~~ 217 (240)
T smart00053 177 ANSDALKLAKEVDPQGERTIGVITKLDLMDEGTDARDILEN 217 (240)
T ss_pred CchhHHHHHHHHHHcCCcEEEEEECCCCCCccHHHHHHHhC
Confidence 333566677766555668899999998766555555543
No 95
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.33 E-value=1.2e-11 Score=98.30 Aligned_cols=110 Identities=25% Similarity=0.328 Sum_probs=67.9
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHhCC
Q 019214 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKEN 183 (344)
Q Consensus 104 i~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~ 183 (344)
|+++|++||||||++++|. |.+...++. .+.+++......... .+
T Consensus 2 V~iiG~~~~GKSTlin~l~------~~~~~~~~~-----------~~~~T~~~~~~~~~~------------------~~ 46 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALT------GKKLAKVSN-----------IPGTTRDPVYGQFEY------------------NN 46 (116)
T ss_dssp EEEEESTTSSHHHHHHHHH------TSTSSEESS-----------STTSSSSEEEEEEEE------------------TT
T ss_pred EEEECCCCCCHHHHHHHHh------ccccccccc-----------cccceeeeeeeeeee------------------ce
Confidence 7899999999999999999 776666665 333333221100001 15
Q ss_pred CCEEEEcCCCCCcchHHHH--HHHHH-hhhhcCCcEEEEEEcCCcc--hhHHHHHHHHhccCCcCEEEeec
Q 019214 184 CDLIIVDTSGRHKQEAALF--EEMRQ-VSEATNPDLVIFVMDSSIG--QAAFDQAQAFKQSVSVGAVIVTK 249 (344)
Q Consensus 184 ~d~vlIDT~G~~~~~~~~~--~~l~~-~~~~~~~d~illvvda~~~--~~~~~~~~~~~~~~~~~~lVinK 249 (344)
..+.|+||||+........ ..... ......+|.+++|+|+... .........+. ...+..+|+||
T Consensus 47 ~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 47 KKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp EEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred eeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 6678999999976432211 12221 2223467999999998763 12333444454 44566889998
No 96
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.33 E-value=9.4e-11 Score=106.44 Aligned_cols=119 Identities=18% Similarity=0.214 Sum_probs=75.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
.++|++.|.|||||||+++++. +.++-|.+ .+++|.. +. ..+. .
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT------~AkpEvA~------------YPFTTK~-i~--vGhf---------------e 211 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLT------TAKPEVAP------------YPFTTKG-IH--VGHF---------------E 211 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHh------cCCCccCC------------CCccccc-ee--Eeee---------------e
Confidence 4689999999999999999999 87777665 3555542 21 1111 1
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHH--HHHhhhhc-CCcEEEEEEcCCcc--hhHHHH---HHHHhccC-CcCEEEeecCC
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEE--MRQVSEAT-NPDLVIFVMDSSIG--QAAFDQ---AQAFKQSV-SVGAVIVTKMD 251 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~--l~~~~~~~-~~d~illvvda~~~--~~~~~~---~~~~~~~~-~~~~lVinK~D 251 (344)
.....+-+|||||+...+.+-+.. ++++.+.. -.+.++|++|+|.. ....++ ....+... .+..+|+||+|
T Consensus 212 ~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D 291 (346)
T COG1084 212 RGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKID 291 (346)
T ss_pred cCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 124577899999997654333222 34444433 36789999999853 232222 33333222 35688999999
Q ss_pred CCCC
Q 019214 252 GHAK 255 (344)
Q Consensus 252 ~~~~ 255 (344)
....
T Consensus 292 ~~~~ 295 (346)
T COG1084 292 IADE 295 (346)
T ss_pred ccch
Confidence 8744
No 97
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=99.33 E-value=2.3e-11 Score=111.89 Aligned_cols=40 Identities=30% Similarity=0.280 Sum_probs=37.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCc
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~ 141 (344)
++|+|+|+.||||||++.+||..|++.|++|++||+||+.
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq~ 41 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVGCDPKA 41 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCcc
Confidence 5789999999999999999999999999999999999974
No 98
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.32 E-value=1.6e-11 Score=104.69 Aligned_cols=161 Identities=22% Similarity=0.193 Sum_probs=97.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCc-cEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWK-PALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~-v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 178 (344)
...-|+|+|++||||||++|.|. |++ .+=++. .++-|+. +.++..
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~------~~k~LArtSk-----------tPGrTq~-iNff~~---------------- 68 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALT------NQKNLARTSK-----------TPGRTQL-INFFEV---------------- 68 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHh------CCcceeecCC-----------CCCccce-eEEEEe----------------
Confidence 33569999999999999999999 754 454554 3333322 222221
Q ss_pred HHhCCCCEEEEcCCCCCcc--hHHHHHHHHHhhh----hc-CCcEEEEEEcCCcchhH--HHHHHHHhccCCcCEEEeec
Q 019214 179 FKKENCDLIIVDTSGRHKQ--EAALFEEMRQVSE----AT-NPDLVIFVMDSSIGQAA--FDQAQAFKQSVSVGAVIVTK 249 (344)
Q Consensus 179 ~~~~~~d~vlIDT~G~~~~--~~~~~~~l~~~~~----~~-~~d~illvvda~~~~~~--~~~~~~~~~~~~~~~lVinK 249 (344)
+..+.+||.||..-. .....+.+..... .. .-..+++++|+..+... .+..+.+.....+..+|+||
T Consensus 69 ----~~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK 144 (200)
T COG0218 69 ----DDELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTK 144 (200)
T ss_pred ----cCcEEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEc
Confidence 223789999997432 2233333332221 11 23468899999987433 34455555544556889999
Q ss_pred CCCCCChhhH--HHHHH-HhCCCeEEEecCCCCCcCcCCCh-HHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 250 MDGHAKGGGA--LSAVA-ATKSPVIFIGTGEHMDEFEVFDV-KPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 250 ~D~~~~~~~~--~~~~~-~~~~pv~~~~~g~~~~~l~~~~~-~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
+|........ +.... ..+. . .+..+ ..+.|+..++| +++|.+.|.+.+.
T Consensus 145 ~DKi~~~~~~k~l~~v~~~l~~---------~----~~~~~~~~~~ss~~k~G-i~~l~~~i~~~~~ 197 (200)
T COG0218 145 ADKLKKSERNKQLNKVAEELKK---------P----PPDDQWVVLFSSLKKKG-IDELKAKILEWLK 197 (200)
T ss_pred cccCChhHHHHHHHHHHHHhcC---------C----CCccceEEEEecccccC-HHHHHHHHHHHhh
Confidence 9998764332 22222 2111 0 01111 56678889999 9999999988764
No 99
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=99.32 E-value=1.1e-10 Score=99.79 Aligned_cols=140 Identities=19% Similarity=0.215 Sum_probs=82.0
Q ss_pred EEEE-cCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHhC
Q 019214 104 IMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (344)
Q Consensus 104 i~iv-G~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 182 (344)
|+|+ +++|+||||++.+||..++++|++|++||+|++.+.....+ +..... .....+. +
T Consensus 2 i~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~~~~~~~~-------~~~~~~---~~~~~~~----~------ 61 (179)
T cd02036 2 IVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLIL-------GLENRV---VYTLHDV----L------ 61 (179)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCchhhc-------cccccC---Ccchhhc----c------
Confidence 4555 56799999999999999999999999999999754321110 000000 0000000 0
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch--hHHHHHHHHhc-cCCcCEEEeecCCCCCCh-hh
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQ-SVSVGAVIVTKMDGHAKG-GG 258 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~--~~~~~~~~~~~-~~~~~~lVinK~D~~~~~-~~ 258 (344)
..|++||||||..... . . .. ...+|.+++|+++.... ......+.+.. .....++|+|+++..... ..
T Consensus 62 ~~d~viiD~p~~~~~~--~---~-~~--l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~ 133 (179)
T cd02036 62 AGDYILIDSPAGIERG--F---I-TA--IAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDMVEGGD 133 (179)
T ss_pred cCCEEEEECCCCCcHH--H---H-HH--HHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccccchhh
Confidence 1299999998865322 1 1 11 23578999999987542 22222333322 234568999999876432 22
Q ss_pred HHHHH-HHhCCCeE
Q 019214 259 ALSAV-AATKSPVI 271 (344)
Q Consensus 259 ~~~~~-~~~~~pv~ 271 (344)
..+.+ ...+.|+.
T Consensus 134 ~~~~~~~~~~~~v~ 147 (179)
T cd02036 134 MVEDIEEILGVPLL 147 (179)
T ss_pred HHHHHHHHhCCCEE
Confidence 22333 33566654
No 100
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=99.32 E-value=1.9e-11 Score=111.72 Aligned_cols=160 Identities=17% Similarity=0.140 Sum_probs=87.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchh-----------HHHHHh--------------hcccCCc
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA-----------FDQLKQ--------------NATKAKI 157 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~-----------~~~l~~--------------~~~~~~v 157 (344)
+|++.|+.||||||++.+||.+|+++|++|++||+||+...+ .+-+.. .....++
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~q~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~l 81 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPKHDSTFTLTGRLIPTVIDVLQAVNYHYEDVRPEDVIYTGYGGV 81 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecCccccccceecCCCCCcHHHHHHhccccccCCCHHHeeEeCCCCe
Confidence 577789999999999999999999999999999999974321 011110 0011233
Q ss_pred ceeccCCCCC-----H--HHHHHHHHHHH-HhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc--h
Q 019214 158 PFYGSYTESD-----P--VRIAVEGVETF-KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--Q 227 (344)
Q Consensus 158 ~~~~~~~~~~-----~--~~~~~~~l~~~-~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~--~ 227 (344)
.+........ . .......++.+ ...+||+|||||+|........ .....+|.+++++.++.. .
T Consensus 82 ~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~yD~ViID~~~~~~~~~~~-------~~l~aAD~vlip~~~~~~sl~ 154 (268)
T TIGR01281 82 DCVEAGGPPAGSGCGGYVVGETVKLLKEHHILDDYDVILFDVLGDVVCGGFA-------TPLQYADYALVVAANDFDALF 154 (268)
T ss_pred EEEecCCCCCCCcccceehhhhHHHhhhccccccCCEEEEecCCccccCccc-------cchhhcCEEEEEecCchhHHH
Confidence 3332111100 0 00001112221 1347999999998854321100 112357899888877643 1
Q ss_pred hHHHH---HHHH--hccCCcCEEEeecCCCCCChhhHHHHHHHhCCCeEE
Q 019214 228 AAFDQ---AQAF--KQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIF 272 (344)
Q Consensus 228 ~~~~~---~~~~--~~~~~~~~lVinK~D~~~~~~~~~~~~~~~~~pv~~ 272 (344)
..... .... ....++.++|+|+++... .........+.|+..
T Consensus 155 ~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~~~---~~~~~~~~~~~~vl~ 201 (268)
T TIGR01281 155 AANRIAASVQEKAKNYDVRLAGIIGNRSDATD---LIERFNERVGMPVLG 201 (268)
T ss_pred HHHHHHHHHHHHhhcCCCceEEEEEeCCChHH---HHHHHHHHcCCCEEE
Confidence 11122 2221 122345678999998651 122233446777653
No 101
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=99.31 E-value=1e-10 Score=105.31 Aligned_cols=146 Identities=20% Similarity=0.160 Sum_probs=84.0
Q ss_pred eEEEEEc-CCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhH-------------HHHHh---h-----cccCCcce
Q 019214 102 SVIMFVG-LQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAF-------------DQLKQ---N-----ATKAKIPF 159 (344)
Q Consensus 102 ~ii~ivG-~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~-------------~~l~~---~-----~~~~~v~~ 159 (344)
++|+|++ ++||||||++.+||..+++.|++|++||+|++..... +.+.. + ....++.+
T Consensus 2 ~iI~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~q~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 81 (246)
T TIGR03371 2 KVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDPQNLLRLHFGMDWSVRDGWARALLNGEPWAAAAYRSSDGVLF 81 (246)
T ss_pred cEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCcchHHHHhCCCCccCCcHHHHHhcCCChHHhHhhcCCCeEE
Confidence 4678875 6699999999999999999999999999999754110 11100 0 01133333
Q ss_pred eccCCCC-CH--------HHHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch-hH
Q 019214 160 YGSYTES-DP--------VRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ-AA 229 (344)
Q Consensus 160 ~~~~~~~-~~--------~~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~-~~ 229 (344)
....... .. ...+.+.+..+....+|+|||||||..... . ... ...+|.+++++.++... ..
T Consensus 82 ip~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~viiD~pp~~~~~---~---~~~--l~~ad~vii~~~~~~~s~~~ 153 (246)
T TIGR03371 82 LPFGDLSADEREAYQAHDAGWLARLLQQLDLAARDWVLIDVPRGPSPI---T---RQA--LAAADLVLVVVNADAACYAT 153 (246)
T ss_pred ecCCCCcHHHHHHHhhcCHHHHHHHHHhcccCCCCEEEEECCCCchHH---H---HHH--HHhCCeEEEEeCCCHHHHHH
Confidence 3221111 01 112234455554444699999999854321 1 111 23579999999886431 11
Q ss_pred HH-HHHHHhc---cCCcCEEEeecCCCCCC
Q 019214 230 FD-QAQAFKQ---SVSVGAVIVTKMDGHAK 255 (344)
Q Consensus 230 ~~-~~~~~~~---~~~~~~lVinK~D~~~~ 255 (344)
.. ....+.. .....++|+|++|....
T Consensus 154 ~~~~~~~l~~~~~~~~~~~iv~n~~~~~~~ 183 (246)
T TIGR03371 154 LHQQALALFAGSGPRIGPHFLINQFDPARQ 183 (246)
T ss_pred HHHHHHHHhhcccccccceEEeeccCcchh
Confidence 11 2221211 11235799999997643
No 102
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.31 E-value=1.4e-11 Score=101.83 Aligned_cols=157 Identities=16% Similarity=0.153 Sum_probs=88.0
Q ss_pred EEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHhCCCC
Q 019214 106 FVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCD 185 (344)
Q Consensus 106 ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~d 185 (344)
++|++|+||||++++|. +..+..++.++ ..+.......... ...++
T Consensus 1 i~G~~gsGKstl~~~l~------~~~~~~~~~~~-----------~~~~~~~~~~~~~-----------------~~~~~ 46 (163)
T cd00880 1 LFGRTNAGKSSLLNALL------GQEVAIVSPVP-----------GTTTDPVEYVWEL-----------------GPLGP 46 (163)
T ss_pred CcCCCCCCHHHHHHHHh------CccccccCCCC-----------CcEECCeEEEEEe-----------------cCCCc
Confidence 57999999999999998 65544333311 1111111100000 01568
Q ss_pred EEEEcCCCCCcchHHHH---HHHHHhhhhcCCcEEEEEEcCCcchhHHHH--HHHHhccCCcCEEEeecCCCCCChhhHH
Q 019214 186 LIIVDTSGRHKQEAALF---EEMRQVSEATNPDLVIFVMDSSIGQAAFDQ--AQAFKQSVSVGAVIVTKMDGHAKGGGAL 260 (344)
Q Consensus 186 ~vlIDT~G~~~~~~~~~---~~l~~~~~~~~~d~illvvda~~~~~~~~~--~~~~~~~~~~~~lVinK~D~~~~~~~~~ 260 (344)
+.++||||......... .... .....+|.+++|+|++........ .........+..+|+||+|.........
T Consensus 47 ~~~~Dt~g~~~~~~~~~~~~~~~~--~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~ 124 (163)
T cd00880 47 VVLIDTPGIDEAGGLGREREELAR--RVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEE 124 (163)
T ss_pred EEEEECCCCCccccchhhHHHHHH--HHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHHH
Confidence 89999999864321111 1111 123358999999999876333222 3333333345688999999876532221
Q ss_pred HHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhh
Q 019214 261 SAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (344)
Q Consensus 261 ~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~ 310 (344)
..... ..........+.+.+|+..+.| ++.+.+.+.+.
T Consensus 125 ~~~~~-----------~~~~~~~~~~~~~~~sa~~~~~-v~~l~~~l~~~ 162 (163)
T cd00880 125 LLELR-----------LLILLLLLGLPVIAVSALTGEG-IDELREALIEA 162 (163)
T ss_pred HHHHH-----------HhhcccccCCceEEEeeeccCC-HHHHHHHHHhh
Confidence 11000 0011122334556678889999 99998887654
No 103
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.31 E-value=5e-12 Score=118.69 Aligned_cols=157 Identities=14% Similarity=0.186 Sum_probs=90.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCc-ceeccCCCCCHHHHHHHHHHHHHh
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKI-PFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v-~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
-|+++|.|||||||++++|. +.++. |+. .+++|.... .+.. ..
T Consensus 160 dVglVG~PNaGKSTLln~ls------~a~~~-va~-----------ypfTT~~p~~G~v~-~~----------------- 203 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVS------AAKPK-IAD-----------YPFTTLHPNLGVVR-VD----------------- 203 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHH------cCCCc-cCC-----------CCCceeCceEEEEE-eC-----------------
Confidence 38999999999999999999 65554 343 233443221 1111 10
Q ss_pred CCCCEEEEcCCCCCcchHH---HHHHHHHhhhhcCCcEEEEEEcCCcch--hHHH----HHHHHhc--cCCcCEEEeecC
Q 019214 182 ENCDLIIVDTSGRHKQEAA---LFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFD----QAQAFKQ--SVSVGAVIVTKM 250 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~---~~~~l~~~~~~~~~d~illvvda~~~~--~~~~----~~~~~~~--~~~~~~lVinK~ 250 (344)
.+..++++||||+...... +... .+.....++.+++|+|++... +... .+..+.. ...+..+|+||+
T Consensus 204 ~~~~~~i~D~PGli~ga~~~~gLg~~--flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKi 281 (335)
T PRK12299 204 DYKSFVIADIPGLIEGASEGAGLGHR--FLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKI 281 (335)
T ss_pred CCcEEEEEeCCCccCCCCccccHHHH--HHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECc
Confidence 1456899999998543211 2111 112233578999999988532 2221 2222322 124568899999
Q ss_pred CCCCChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 251 DGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 251 D~~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
|+.............. .... ..+.+.+|+++|+| +++|+++|.+.+.
T Consensus 282 DL~~~~~~~~~~~~~~------------~~~~--~~~i~~iSAktg~G-I~eL~~~L~~~l~ 328 (335)
T PRK12299 282 DLLDEEEEREKRAALE------------LAAL--GGPVFLISAVTGEG-LDELLRALWELLE 328 (335)
T ss_pred ccCCchhHHHHHHHHH------------HHhc--CCCEEEEEcCCCCC-HHHHHHHHHHHHH
Confidence 9864321111111100 0000 12346688999999 9999999988764
No 104
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.30 E-value=1.8e-11 Score=126.22 Aligned_cols=145 Identities=21% Similarity=0.219 Sum_probs=86.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
..|+++|.|||||||++|+|+ |.+.. +.. .++.+..... .... .
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Lt------g~~~~-vgn-----------~pGvTve~k~--g~~~----------------~ 47 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLT------GARQR-VGN-----------WAGVTVERKE--GQFS----------------T 47 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHh------CCCCc-cCC-----------CCCceEeeEE--EEEE----------------c
Confidence 569999999999999999998 75542 222 1111111110 0000 1
Q ss_pred CCCCEEEEcCCCCCcchH-----HHHHHH-HHhhhhcCCcEEEEEEcCCcchhHHHHHHHHhccCCcCEEEeecCCCCCC
Q 019214 182 ENCDLIIVDTSGRHKQEA-----ALFEEM-RQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAK 255 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~-----~~~~~l-~~~~~~~~~d~illvvda~~~~~~~~~~~~~~~~~~~~~lVinK~D~~~~ 255 (344)
.++++.++||||...... ...+.+ +.......+|.+++|+|++.............+...+..+|+||+|....
T Consensus 48 ~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~l~l~~ql~e~giPvIvVlNK~Dl~~~ 127 (772)
T PRK09554 48 TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEK 127 (772)
T ss_pred CceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchhhHHHHHHHHHcCCCEEEEEEchhhhhc
Confidence 267889999999854321 111222 12222336899999999987644333333444444566899999998644
Q ss_pred hh--hHH-HHHHHhCCCeEEEe--cCCCCCcC
Q 019214 256 GG--GAL-SAVAATKSPVIFIG--TGEHMDEF 282 (344)
Q Consensus 256 ~~--~~~-~~~~~~~~pv~~~~--~g~~~~~l 282 (344)
.+ ... ......+.|+..++ .|++++++
T Consensus 128 ~~i~id~~~L~~~LG~pVvpiSA~~g~GIdeL 159 (772)
T PRK09554 128 QNIRIDIDALSARLGCPVIPLVSTRGRGIEAL 159 (772)
T ss_pred cCcHHHHHHHHHHhCCCEEEEEeecCCCHHHH
Confidence 32 222 33355789988887 66665443
No 105
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=99.30 E-value=4e-10 Score=99.03 Aligned_cols=140 Identities=19% Similarity=0.223 Sum_probs=83.9
Q ss_pred CCeEEEEEc-CCCCCHHHHHHHHHHHHHH-cCCccEEeecCcCcchhH------------HHHH-------hhc---ccC
Q 019214 100 KPSVIMFVG-LQGSGKTTTCTKYAYYHQK-KGWKPALVCADTFRAGAF------------DQLK-------QNA---TKA 155 (344)
Q Consensus 100 ~~~ii~ivG-~~GvGKTTl~~~La~~l~~-~g~~v~iv~~D~~~~~~~------------~~l~-------~~~---~~~ 155 (344)
..++|+|+| .+|+||||++.+||..++. .|++|++||+|++.+... +.+. ... ...
T Consensus 34 ~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~i~~~~~~ 113 (207)
T TIGR03018 34 NNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPSLHRTLGLEAEPGLSDCLLDPVLDLADVLVPTNIG 113 (207)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCChhhhheeCCCCCCCHHHHHcCCCCCHHHHhccCCCC
Confidence 457899996 4599999999999999986 699999999998764321 1111 000 112
Q ss_pred CcceeccCCCC-CHHH-----HHHHHHHHHHhCCC--CEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc-
Q 019214 156 KIPFYGSYTES-DPVR-----IAVEGVETFKKENC--DLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG- 226 (344)
Q Consensus 156 ~v~~~~~~~~~-~~~~-----~~~~~l~~~~~~~~--d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~- 226 (344)
++.+....... .+.. .+.+.+..++. .| |+||||||+....... ..+. ..+|.+++|+.+...
T Consensus 114 ~l~vl~~g~~~~~~~~~~~~~~l~~~l~~l~~-~y~~D~IiiD~pp~~~~~~~-----~~l~--~~aD~viiV~~~~~~~ 185 (207)
T TIGR03018 114 RLSLLPAGRRHPNPTELLASQRMRSLLHELAR-RYPDRIIIIDTPPLLVFSEA-----RALA--RLVGQIVLVVEEGRTT 185 (207)
T ss_pred CEEEEeCCCCCCCHHHHhCcHHHHHHHHHHHh-hCCCCEEEEECCCCcchhHH-----HHHH--HhCCEEEEEEECCCCC
Confidence 33333222221 1111 22334444543 45 9999999887643211 1111 237999999998754
Q ss_pred -hhHHHHHHHHhccCCcCEEEee
Q 019214 227 -QAAFDQAQAFKQSVSVGAVIVT 248 (344)
Q Consensus 227 -~~~~~~~~~~~~~~~~~~lVin 248 (344)
....+....++ ..++.|+|+|
T Consensus 186 ~~~~~~~~~~l~-~~~~~G~v~N 207 (207)
T TIGR03018 186 QEAVKEALSALE-SCKVLGVVLN 207 (207)
T ss_pred HHHHHHHHHHhc-CCCeEEEEeC
Confidence 23334444444 4566788887
No 106
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=99.29 E-value=1.4e-10 Score=108.11 Aligned_cols=44 Identities=25% Similarity=0.366 Sum_probs=40.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcc
Q 019214 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (344)
Q Consensus 99 ~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~ 142 (344)
.+.++|+++|.+|+||||++.+||..++++|++|+++++|++.+
T Consensus 29 ~~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVllid~D~~~~ 72 (329)
T cd02033 29 KKTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKSD 72 (329)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeeccc
Confidence 45689999999999999999999999999999999999998763
No 107
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.29 E-value=2.3e-11 Score=102.74 Aligned_cols=154 Identities=18% Similarity=0.204 Sum_probs=83.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHhC
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 182 (344)
.|+++|.+||||||++++|. +.+.. +.. .++.+. .+.. .... ..
T Consensus 2 ~i~~~G~~~~GKssli~~l~------~~~~~-~~~-----------~~~~t~-~~~~-~~~~----------------~~ 45 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLT------RAKPE-VAP-----------YPFTTK-SLFV-GHFD----------------YK 45 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHh------cCCCc-cCC-----------CCCccc-ceeE-EEEc----------------cC
Confidence 58999999999999999998 54432 111 011111 0000 0000 01
Q ss_pred CCCEEEEcCCCCCcch---HHHH--HHHHHhhhhcCCcEEEEEEcCCcchh-----HHHHHHHHhcc--CCcCEEEeecC
Q 019214 183 NCDLIIVDTSGRHKQE---AALF--EEMRQVSEATNPDLVIFVMDSSIGQA-----AFDQAQAFKQS--VSVGAVIVTKM 250 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~---~~~~--~~l~~~~~~~~~d~illvvda~~~~~-----~~~~~~~~~~~--~~~~~lVinK~ 250 (344)
+..+.|+||||..... .... ..+... ...+|.+++|+|++.... .......+... ..+..+|+||+
T Consensus 46 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~--~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~ 123 (168)
T cd01897 46 YLRWQVIDTPGLLDRPLEERNTIEMQAITAL--AHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKI 123 (168)
T ss_pred ceEEEEEECCCcCCccccCCchHHHHHHHHH--HhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEcc
Confidence 4678999999974211 0111 111111 113578999999975321 11222223222 23558899999
Q ss_pred CCCCChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 251 DGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 251 D~~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
|........ . ... .... ...+.+.+|+++|+| ++++++++.+.+
T Consensus 124 Dl~~~~~~~-~-~~~-------------~~~~-~~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 167 (168)
T cd01897 124 DLLTFEDLS-E-IEE-------------EEEL-EGEEVLKISTLTEEG-VDEVKNKACELL 167 (168)
T ss_pred ccCchhhHH-H-HHH-------------hhhh-ccCceEEEEecccCC-HHHHHHHHHHHh
Confidence 986542111 1 110 0001 122345689999999 999999987653
No 108
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.29 E-value=2.4e-11 Score=101.80 Aligned_cols=156 Identities=20% Similarity=0.187 Sum_probs=83.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHhC
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 182 (344)
+|+++|.+||||||++++|. |.+........ .+..+.. ..+..... ..
T Consensus 2 ~i~i~G~~~~GKssl~~~l~------~~~~~~~~~~~---------~~~~t~~-~~~~~~~~----------------~~ 49 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALT------GIETDRLPEEK---------KRGITID-LGFAYLDL----------------PS 49 (164)
T ss_pred EEEEEecCCCCHHHHHHHHh------Ccccccchhhh---------ccCceEE-eeeEEEEe----------------cC
Confidence 68999999999999999998 54322111100 0011110 00000000 01
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc--hhHHHHHHHHhc-cCCcCEEEeecCCCCCChh--
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QAAFDQAQAFKQ-SVSVGAVIVTKMDGHAKGG-- 257 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~--~~~~~~~~~~~~-~~~~~~lVinK~D~~~~~~-- 257 (344)
++.+.++||||... +...+. .....+|.+++|+|++.+ ....+....... ...+..+|+||+|......
T Consensus 50 ~~~~~~~DtpG~~~----~~~~~~--~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~ 123 (164)
T cd04171 50 GKRLGFIDVPGHEK----FIKNML--AGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLE 123 (164)
T ss_pred CcEEEEEECCChHH----HHHHHH--hhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHH
Confidence 45678999999742 211121 123468999999999763 122222222211 1235578999999865421
Q ss_pred hHHHHHHH-hCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHh
Q 019214 258 GALSAVAA-TKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (344)
Q Consensus 258 ~~~~~~~~-~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~ 309 (344)
...+.... .. . . .. ...+.+.+|++.|+| ++++++.+.+
T Consensus 124 ~~~~~~~~~~~---------~-~-~~-~~~~~~~~Sa~~~~~-v~~l~~~l~~ 163 (164)
T cd04171 124 LVEEEIRELLA---------G-T-FL-ADAPIFPVSAVTGEG-IEELKEYLDE 163 (164)
T ss_pred HHHHHHHHHHH---------h-c-Cc-CCCcEEEEeCCCCcC-HHHHHHHHhh
Confidence 11111111 00 0 0 00 123456688899999 9999888754
No 109
>COG2262 HflX GTPases [General function prediction only]
Probab=99.29 E-value=1.6e-11 Score=114.63 Aligned_cols=158 Identities=18% Similarity=0.202 Sum_probs=101.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
....|+++|-+|+||||++|.|. |..+..-+ .-|+|.+.-. .....
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT------~~~~~~~d------------~LFATLdptt-R~~~l--------------- 236 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALT------GADVYVAD------------QLFATLDPTT-RRIEL--------------- 236 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHh------ccCeeccc------------cccccccCce-eEEEe---------------
Confidence 44689999999999999999999 66554322 1222222110 00000
Q ss_pred HhCCCCEEEEcCCCCC-cchHHHHHHHH-HhhhhcCCcEEEEEEcCCcch--hH----HHHHHHHhccCCcCEEEeecCC
Q 019214 180 KKENCDLIIVDTSGRH-KQEAALFEEMR-QVSEATNPDLVIFVMDSSIGQ--AA----FDQAQAFKQSVSVGAVIVTKMD 251 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~-~~~~~~~~~l~-~~~~~~~~d~illvvda~~~~--~~----~~~~~~~~~~~~~~~lVinK~D 251 (344)
..+..+++-||.|+- .-++.+++..+ .+.+...+|.++.|+|++.+. .. .+.+..+.-...+..+|+||+|
T Consensus 237 -~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD 315 (411)
T COG2262 237 -GDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKID 315 (411)
T ss_pred -CCCceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEeccc
Confidence 015778999999974 34567777665 455677899999999999761 11 1222333222346688999999
Q ss_pred CCCChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 252 GHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 252 ~~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
...... .+.. +....+ ..+++|+.+|+| ++.|.+.|.+.++
T Consensus 316 ~~~~~~-~~~~----------------~~~~~~--~~v~iSA~~~~g-l~~L~~~i~~~l~ 356 (411)
T COG2262 316 LLEDEE-ILAE----------------LERGSP--NPVFISAKTGEG-LDLLRERIIELLS 356 (411)
T ss_pred ccCchh-hhhh----------------hhhcCC--CeEEEEeccCcC-HHHHHHHHHHHhh
Confidence 876532 1111 111111 357899999999 9999999999775
No 110
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=99.29 E-value=4.6e-11 Score=109.64 Aligned_cols=41 Identities=29% Similarity=0.250 Sum_probs=38.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcc
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~ 142 (344)
++|++.|+.||||||++.+||..|+++|++|++||+||+..
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~G~~VlliD~D~q~~ 41 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEMGKKVMIVGCDPKAD 41 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCC
Confidence 36899999999999999999999999999999999999754
No 111
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.28 E-value=1e-11 Score=103.57 Aligned_cols=110 Identities=20% Similarity=0.147 Sum_probs=62.8
Q ss_pred CCCEEEEcCCCCCcchHH-HHHHH-HHhhhhcCCcEEEEEEcCCcchhHHHHHHHHhccCCcCEEEeecCCCCCChhh--
Q 019214 183 NCDLIIVDTSGRHKQEAA-LFEEM-RQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGG-- 258 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~-~~~~l-~~~~~~~~~d~illvvda~~~~~~~~~~~~~~~~~~~~~lVinK~D~~~~~~~-- 258 (344)
+.++.++||||....... ....+ ........+|.+++|+|++.................+..+|+||+|.......
T Consensus 42 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~ 121 (158)
T cd01879 42 GKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLERNLYLTLQLLELGLPVVVALNMIDEAEKRGIKI 121 (158)
T ss_pred CeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchhHHHHHHHHHHcCCCEEEEEehhhhcccccchh
Confidence 457899999997532210 01111 11111146899999999986543333333333233456889999998643211
Q ss_pred HHHHH-HHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 259 ALSAV-AATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 259 ~~~~~-~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
....+ ...+ .+.+.+|+..|+| +..+++.+.+..
T Consensus 122 ~~~~~~~~~~------------------~~~~~iSa~~~~~-~~~l~~~l~~~~ 156 (158)
T cd01879 122 DLDKLSELLG------------------VPVVPTSARKGEG-IDELKDAIAELA 156 (158)
T ss_pred hHHHHHHhhC------------------CCeEEEEccCCCC-HHHHHHHHHHHh
Confidence 11111 1111 1345677888999 999998887753
No 112
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.28 E-value=3.2e-11 Score=102.95 Aligned_cols=108 Identities=15% Similarity=0.155 Sum_probs=64.0
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchh--HHHHHHHHhccCCcCEEEeecCCCCCCh-hhH
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAFKQSVSVGAVIVTKMDGHAKG-GGA 259 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~--~~~~~~~~~~~~~~~~lVinK~D~~~~~-~~~ 259 (344)
++.+.|+||||...... .... ....+|.+++|+|++.+.. .............+..+|+||+|..... ...
T Consensus 66 ~~~~~l~Dt~G~~~~~~----~~~~--~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~ 139 (179)
T cd01890 66 EYLLNLIDTPGHVDFSY----EVSR--SLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADPERV 139 (179)
T ss_pred cEEEEEEECCCChhhHH----HHHH--HHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCHHHH
Confidence 56778999999854221 1111 1335899999999986522 2222222222223458899999985422 112
Q ss_pred HHHHH-HhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 260 LSAVA-ATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 260 ~~~~~-~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
...+. ..+. +..+.+.+|++.|+| +++|++.+.+.++
T Consensus 140 ~~~~~~~~~~---------------~~~~~~~~Sa~~g~g-i~~l~~~l~~~~~ 177 (179)
T cd01890 140 KQQIEDVLGL---------------DPSEAILVSAKTGLG-VEDLLEAIVERIP 177 (179)
T ss_pred HHHHHHHhCC---------------CcccEEEeeccCCCC-HHHHHHHHHhhCC
Confidence 22222 1111 112346789999999 9999999987764
No 113
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=99.27 E-value=9.2e-11 Score=103.90 Aligned_cols=148 Identities=19% Similarity=0.145 Sum_probs=84.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcc-------hhHHHHH---------hhcccC-----------
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA-------GAFDQLK---------QNATKA----------- 155 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~-------~~~~~l~---------~~~~~~----------- 155 (344)
++++.|.+|+||||++.+++..+++.|+++.++++|+.++ +....+. .+....
T Consensus 1 ~~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHNLSDKGLPNLSDAFIVEDPEIAPNLYREEVDATRRVERAWG 80 (217)
T ss_pred CEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEECCCCcccccccCCCchhhhccCChHHHHHHHHHHHHHHHHhhhccc
Confidence 3678899999999999999999999999999999999872 3222111 010000
Q ss_pred --Cccee-ccCCCCCHHHH--HHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc--hh
Q 019214 156 --KIPFY-GSYTESDPVRI--AVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QA 228 (344)
Q Consensus 156 --~v~~~-~~~~~~~~~~~--~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~--~~ 228 (344)
+..+. .......+.+. ..+.++.+...+||+||||||+.......+ +.........|.+++|+.+... .+
T Consensus 81 ~~~~~~~~~~~~~p~~~ell~~~~l~~~l~~~~yD~IIiD~pp~~~~~~~l---~~~~l~~~~~~~vllV~~p~~~s~~~ 157 (217)
T cd02035 81 GEGGLMLELAAALPGIEELASLLAVFREFSEGLYDVIVFDTAPTGHTLRLL---VRELLTDPERTSFRLVTLPEKLPLYE 157 (217)
T ss_pred chhhhHHhHhccCCCHHHHHHHHHHHHHHhcCCCCEEEECCCCchHHHHHH---HHHHccCCCceEEEEEeCCCccHHHH
Confidence 00000 00111222222 223334444434999999999864322111 1111111124789999988753 23
Q ss_pred HHHHHHHHhcc-CCcCEEEeecCCCC
Q 019214 229 AFDQAQAFKQS-VSVGAVIVTKMDGH 253 (344)
Q Consensus 229 ~~~~~~~~~~~-~~~~~lVinK~D~~ 253 (344)
.......+... .++.++|+|+....
T Consensus 158 ~~~~l~~l~~~~~~~~glVlN~~~~~ 183 (217)
T cd02035 158 TERAITELALYGIPVDAVVVNRVLPA 183 (217)
T ss_pred HHHHHHHHHHCCCCCCEEEEeCCcCc
Confidence 33333433332 35568999998754
No 114
>PRK04213 GTP-binding protein; Provisional
Probab=99.27 E-value=4.3e-11 Score=104.44 Aligned_cols=162 Identities=19% Similarity=0.151 Sum_probs=86.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...|+++|++||||||++++|. |.... +.. .+..+.....+ .
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~------~~~~~-~~~-----------~~~~t~~~~~~-~------------------- 50 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELT------GKKVR-VGK-----------RPGVTRKPNHY-D------------------- 50 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHh------CCCCc-cCC-----------CCceeeCceEE-e-------------------
Confidence 3569999999999999999998 54421 111 11111111110 0
Q ss_pred hCCCCEEEEcCCCCCcc---hHHHHHHHHH----hh--hhcCCcEEEEEEcCCcchh-------------HHHHHHHHhc
Q 019214 181 KENCDLIIVDTSGRHKQ---EAALFEEMRQ----VS--EATNPDLVIFVMDSSIGQA-------------AFDQAQAFKQ 238 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~---~~~~~~~l~~----~~--~~~~~d~illvvda~~~~~-------------~~~~~~~~~~ 238 (344)
..++.++||||.... .....+.++. .. ....++.+++|+|++.... .......+..
T Consensus 51 --~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 128 (201)
T PRK04213 51 --WGDFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE 128 (201)
T ss_pred --ecceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH
Confidence 115789999996321 1111112221 11 1224578999999864211 1112222222
Q ss_pred cCCcCEEEeecCCCCCChhhHHHH-HHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCC
Q 019214 239 SVSVGAVIVTKMDGHAKGGGALSA-VAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (344)
Q Consensus 239 ~~~~~~lVinK~D~~~~~~~~~~~-~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~ 313 (344)
...+..+|+||+|+.......... ....+..- +......+.+.+|+++| | +++++++|.+.++.
T Consensus 129 ~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~SA~~g-g-i~~l~~~l~~~~~~ 193 (201)
T PRK04213 129 LGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYP---------PWRQWQDIIAPISAKKG-G-IEELKEAIRKRLHE 193 (201)
T ss_pred cCCCeEEEEECccccCcHHHHHHHHHHHhcCCc---------cccccCCcEEEEecccC-C-HHHHHHHHHHhhcC
Confidence 223558899999986543222222 22222100 00001123567899999 9 99999999887754
No 115
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=99.27 E-value=2.1e-10 Score=105.22 Aligned_cols=142 Identities=16% Similarity=0.161 Sum_probs=85.9
Q ss_pred CCeEEEEEc-CCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhH------------HHHHh---------hcccCCc
Q 019214 100 KPSVIMFVG-LQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAF------------DQLKQ---------NATKAKI 157 (344)
Q Consensus 100 ~~~ii~ivG-~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~------------~~l~~---------~~~~~~v 157 (344)
+.++|+|++ .+|+||||++.+||..+++.|++|++||+|+.++... +.+.. .....++
T Consensus 102 ~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D~~~~~~~~~~~~~~~~gl~~~l~~~~~~~~i~~~~~~~~l 181 (274)
T TIGR03029 102 GRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLRDPVQHRNFKLSEQRGLSDILAGRSDLEVITHIPALENL 181 (274)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCccHHHhcCCCCCCCHHHHhCCCCCHHHeeecCCCCCE
Confidence 457888885 4599999999999999999999999999998665421 11110 0111233
Q ss_pred ceeccCCC-CCHHHH-----HHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc--hhH
Q 019214 158 PFYGSYTE-SDPVRI-----AVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QAA 229 (344)
Q Consensus 158 ~~~~~~~~-~~~~~~-----~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~--~~~ 229 (344)
.+...... .++... ....+..+ ...||+||||||+........ .+ ...+|.+++|+.+... .+.
T Consensus 182 ~~lp~g~~~~~~~~~~~~~~~~~~l~~l-~~~yD~ViiD~pp~~~~~d~~-----~~--~~~~d~vilV~~~~~t~~~~~ 253 (274)
T TIGR03029 182 SVLPAGAIPPNPQELLARPAFTDLLNKV-MGDYDVVIVDTPSAEHSSDAQ-----IV--ATRARGTLIVSRVNETRLHEL 253 (274)
T ss_pred EEEeCcCCCCCHHHHhCcHHHHHHHHHH-HhcCCEEEEeCCCcccccHHH-----HH--HHhCCeEEEEEECCCCCHHHH
Confidence 33332221 222222 23344444 358999999999875422111 01 1246889999987643 233
Q ss_pred HHHHHHHhc-cCCcCEEEeec
Q 019214 230 FDQAQAFKQ-SVSVGAVIVTK 249 (344)
Q Consensus 230 ~~~~~~~~~-~~~~~~lVinK 249 (344)
......+.. ..++.|+|+|+
T Consensus 254 ~~~~~~l~~~~~~~~G~VlN~ 274 (274)
T TIGR03029 254 TSLKEHLSGVGVRVVGAVLNQ 274 (274)
T ss_pred HHHHHHHHhCCCCEEEEEeCC
Confidence 333344432 34667999986
No 116
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=99.26 E-value=7.7e-11 Score=109.10 Aligned_cols=164 Identities=16% Similarity=0.200 Sum_probs=91.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhH------------HHHHhhc------ccCCccee---
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAF------------DQLKQNA------TKAKIPFY--- 160 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~------------~~l~~~~------~~~~v~~~--- 160 (344)
++|+|+|++||||||++.+||..|+++|++|++||+||+..... +-+.... ....+...
T Consensus 1 ~vIav~gKGGvGKTT~a~nLA~~La~~g~rVLlID~Dpq~~~~~~l~g~~~~~~l~dv~~~~~~~~~~~~~~~vi~~~~~ 80 (296)
T TIGR02016 1 RIIAIYGKGGSGKSFTTTNLSHMMAEMGKRVLQLGCDPKHDSTSLLFGGISLPTIIEVATEKKLAGEEVKVGDVCFKTTI 80 (296)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEecCCCCccchhccCCCCCCHHHHHHhhccccCCCCHHHheeeccc
Confidence 46888899999999999999999999999999999999543211 1111000 00000000
Q ss_pred --------cc-CCCCCH--------HHHHHHHHHHHH--hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEE
Q 019214 161 --------GS-YTESDP--------VRIAVEGVETFK--KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVM 221 (344)
Q Consensus 161 --------~~-~~~~~~--------~~~~~~~l~~~~--~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvv 221 (344)
.. .....+ .......++.+. ..+|||+||||+|......... .+ ....+|.+++|+
T Consensus 81 ~~~~~~~~~~e~~~~~~~~gc~~~~~~~~~~~l~~l~~~~~~yD~IliD~~~~~~~~g~~~-~~----a~~~Ad~viVvt 155 (296)
T TIGR02016 81 MNGSGGVYGMELGGPEVGRGCGGRGIIHGFDLLEKLGFHDWDFDFVLMDFLGDVVCGGFAT-PL----ARSLAEEVIVIG 155 (296)
T ss_pred cCcCCCcceeecCCCCcccccCcchhhHHHHHHHHhhhhcccCCEEEEecCCCcccccccc-ch----hhhhCCeEEEEe
Confidence 00 000000 011123344332 2479999999977431100000 00 112478899998
Q ss_pred cCCcch-----hHHHHHHHHhc---cCCcCEEEeecCCCCCChhhHHHHHHHhCCCeEEE
Q 019214 222 DSSIGQ-----AAFDQAQAFKQ---SVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFI 273 (344)
Q Consensus 222 da~~~~-----~~~~~~~~~~~---~~~~~~lVinK~D~~~~~~~~~~~~~~~~~pv~~~ 273 (344)
+++... ........+.+ ..++.++|+|+.+... .........++|+...
T Consensus 156 ~~e~~sl~~a~~l~k~v~~~~~~~~~v~i~GVV~N~~~~~~---~~~~~~~~~~i~vLg~ 212 (296)
T TIGR02016 156 SNDRQSLYVANNICNAVEYFRKLGGRVGLLGLVVNRDDGSG---EAQAFAREVGIPVLAA 212 (296)
T ss_pred cchHHHHHHHHHHHHHHHHHHHcCCCCcceEEEEeCCCCcc---HHHHHHHHcCCCeEEE
Confidence 876421 12223333333 2456789999998632 3345566678877764
No 117
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.26 E-value=1.7e-10 Score=100.23 Aligned_cols=113 Identities=21% Similarity=0.209 Sum_probs=61.8
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch--hHHHHHHHHhccCCcCEEEeecCCCCCC-hhhH
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQSVSVGAVIVTKMDGHAK-GGGA 259 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~--~~~~~~~~~~~~~~~~~lVinK~D~~~~-~~~~ 259 (344)
++.+.++||||..... ..+.. ....+|.+++|+|++.+. ..............+..+|+||+|.... ....
T Consensus 64 ~~~~~l~DtpG~~~~~----~~~~~--~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~ 137 (194)
T cd01891 64 DTKINIVDTPGHADFG----GEVER--VLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEV 137 (194)
T ss_pred CEEEEEEECCCcHHHH----HHHHH--HHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHH
Confidence 5678899999985322 11111 133579999999998642 1112222222222345888999998533 2222
Q ss_pred HHHHH-----------HhCCCeEEEe--cCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 260 LSAVA-----------ATKSPVIFIG--TGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 260 ~~~~~-----------~~~~pv~~~~--~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
.+.+. ..+.|+.+++ +|.++.++... ..+ +++|++.|.++.+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~~~~----------~~~-~~~l~~~~~~~~~ 192 (194)
T cd01891 138 VDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNLEDP----------SED-LEPLFDTIIEHVP 192 (194)
T ss_pred HHHHHHHHHHhCCccccCccCEEEeehhccccccccccc----------hhh-HHHHHHHHHhcCC
Confidence 22111 1245555555 45544333322 244 7777887777665
No 118
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.26 E-value=1.3e-11 Score=120.47 Aligned_cols=152 Identities=16% Similarity=0.170 Sum_probs=84.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHhC
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 182 (344)
-|+++|.||||||||+++|. +.+..+ +. .+++|+... ..... ..
T Consensus 161 dV~LVG~PNAGKSTLln~Ls------~akpkI-ad-----------ypfTTl~P~--lGvv~----------------~~ 204 (500)
T PRK12296 161 DVGLVGFPSAGKSSLISALS------AAKPKI-AD-----------YPFTTLVPN--LGVVQ----------------AG 204 (500)
T ss_pred eEEEEEcCCCCHHHHHHHHh------cCCccc-cc-----------cCcccccce--EEEEE----------------EC
Confidence 48999999999999999999 665543 33 234443221 11111 01
Q ss_pred CCCEEEEcCCCCCcchHHHHHHH--HHhhhhcCCcEEEEEEcCCcc---hh---HHH----HHHHHhc-----------c
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEM--RQVSEATNPDLVIFVMDSSIG---QA---AFD----QAQAFKQ-----------S 239 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l--~~~~~~~~~d~illvvda~~~---~~---~~~----~~~~~~~-----------~ 239 (344)
+..++|+||||+....... ..+ ..+.....+|.+++|+|++.. .+ ..+ .+..+.. .
T Consensus 205 ~~~f~laDtPGliegas~g-~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~ 283 (500)
T PRK12296 205 DTRFTVADVPGLIPGASEG-KGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLA 283 (500)
T ss_pred CeEEEEEECCCCccccchh-hHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhc
Confidence 5678999999985432111 111 111223458999999999741 11 111 2222221 1
Q ss_pred CCcCEEEeecCCCCCChhhHHH----HHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 240 VSVGAVIVTKMDGHAKGGGALS----AVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 240 ~~~~~lVinK~D~~~~~~~~~~----~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
..+..+|+||+|...... ... .+...+.| .+.+|+++|+| +++|++++.+.+
T Consensus 284 ~kP~IVVlNKiDL~da~e-l~e~l~~~l~~~g~~------------------Vf~ISA~tgeG-LdEL~~~L~ell 339 (500)
T PRK12296 284 ERPRLVVLNKIDVPDARE-LAEFVRPELEARGWP------------------VFEVSAASREG-LRELSFALAELV 339 (500)
T ss_pred CCCEEEEEECccchhhHH-HHHHHHHHHHHcCCe------------------EEEEECCCCCC-HHHHHHHHHHHH
Confidence 245688999999854321 111 12222333 34456666666 666666665554
No 119
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=99.26 E-value=1.3e-10 Score=106.71 Aligned_cols=42 Identities=24% Similarity=0.124 Sum_probs=38.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHH-cCCccEEeecCcCcch
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQK-KGWKPALVCADTFRAG 143 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~-~g~~v~iv~~D~~~~~ 143 (344)
++|+|+|+.||||||++.+||..|++ .|++|++||+||+...
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~La~~~G~rvLliD~Dpq~~~ 45 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPKADS 45 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhcCCeEEEeccCcCcCh
Confidence 67888899999999999999999997 5999999999998643
No 120
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=99.25 E-value=1.2e-10 Score=108.01 Aligned_cols=42 Identities=29% Similarity=0.226 Sum_probs=38.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcc
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~ 142 (344)
.++|+|+|++||||||++.+||..|++.|++|++||+||+..
T Consensus 4 ~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q~~ 45 (295)
T PRK13234 4 LRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKAD 45 (295)
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEecccccc
Confidence 468888899999999999999999999999999999999643
No 121
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=99.25 E-value=3.4e-10 Score=100.68 Aligned_cols=148 Identities=20% Similarity=0.204 Sum_probs=90.2
Q ss_pred eEEEEEcCC-CCCHHHHHHHHHHHHHHcCCccEEeecCcCc-------------chh-HHHH-----H--hhcccCCcce
Q 019214 102 SVIMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVCADTFR-------------AGA-FDQL-----K--QNATKAKIPF 159 (344)
Q Consensus 102 ~ii~ivG~~-GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~-------------~~~-~~~l-----~--~~~~~~~v~~ 159 (344)
++|+|+|+. ||||||++++||..|.+.|++|.+||.||+. .|- ...+ . .+....++.+
T Consensus 2 ~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~dpqN~Lrlhfg~~~~~~~G~a~a~l~~~~W~~~~~~~~~g~~~ 81 (243)
T PF06564_consen 2 KVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLDPQNLLRLHFGLPLDDRDGWARALLDGADWQQAAYRYSDGVDF 81 (243)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCcHHHHHHhcCCCCcccccHHHHHhCCCCHHHHhhccCCCCEE
Confidence 579999988 9999999999999999999999999999821 110 0111 1 1222345444
Q ss_pred ecc--CCCCCH---------HHHHHHHHHHHH-hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch
Q 019214 160 YGS--YTESDP---------VRIAVEGVETFK-KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ 227 (344)
Q Consensus 160 ~~~--~~~~~~---------~~~~~~~l~~~~-~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~ 227 (344)
..- .+..+. .....+.+..+. ...+++|+||||.-.... ... . ...+|.++.|+.+....
T Consensus 82 LPfG~l~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~~~iliD~P~g~~~~---~~~---a--l~~aD~vL~V~~~Da~s 153 (243)
T PF06564_consen 82 LPFGQLTEAEREAFEQLAQDPQWLARALAALKALGPYDWILIDTPPGPSPY---TRQ---A--LAAADLVLVVVNPDAAS 153 (243)
T ss_pred EcCCCCCHHHHHHHHHhhcCHHHHHHHHHHHhccCCCCEEEEeCCCCCcHH---HHH---H--HHhCCeEEEEeCCCHHH
Confidence 321 111111 122344556665 567899999998754322 111 1 22379999999886542
Q ss_pred hHHHHHHHHhccCCcCEEEeecCCCCCChhhHH
Q 019214 228 AAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGAL 260 (344)
Q Consensus 228 ~~~~~~~~~~~~~~~~~lVinK~D~~~~~~~~~ 260 (344)
-..-....+. .-..+|+|+.|........+
T Consensus 154 ~~~L~q~~l~---~~~~~liNq~~~~s~l~~D~ 183 (243)
T PF06564_consen 154 HARLHQRALP---AGHRFLINQYDPASQLQRDL 183 (243)
T ss_pred HHHHHHhccc---CCcEEEEeccCccchHHHHH
Confidence 2111111111 22488999999988776554
No 122
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.25 E-value=1.3e-11 Score=101.50 Aligned_cols=135 Identities=20% Similarity=0.237 Sum_probs=77.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHhC
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 182 (344)
.|+++|.+||||||+++++. +.... +. ...++
T Consensus 2 kv~liG~~~vGKSsL~~~l~------~~~~~------~~-----------~t~~~------------------------- 33 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQ------GEEIL------YK-----------KTQAV------------------------- 33 (142)
T ss_pred eEEEECCCCCCHHHHHHHHc------CCccc------cc-----------cceeE-------------------------
Confidence 48999999999999999998 54321 00 00011
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH--HHHHHHHhccCCcCEEEeecCCCCCChh--h
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFKQSVSVGAVIVTKMDGHAKGG--G 258 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~--~~~~~~~~~~~~~~~lVinK~D~~~~~~--~ 258 (344)
++...++||||...........+.. ....+|.+++|+|++.+... ......+ ..+..+|+||+|+..... .
T Consensus 34 ~~~~~~iDt~G~~~~~~~~~~~~~~--~~~~ad~vilv~d~~~~~s~~~~~~~~~~---~~p~ilv~NK~Dl~~~~~~~~ 108 (142)
T TIGR02528 34 EYNDGAIDTPGEYVENRRLYSALIV--TAADADVIALVQSATDPESRFPPGFASIF---VKPVIGLVTKIDLAEADVDIE 108 (142)
T ss_pred EEcCeeecCchhhhhhHHHHHHHHH--HhhcCCEEEEEecCCCCCcCCChhHHHhc---cCCeEEEEEeeccCCcccCHH
Confidence 1112589999973222222222221 24578999999999765322 1122211 135678899999864311 1
Q ss_pred H-HHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHH
Q 019214 259 A-LSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIH 308 (344)
Q Consensus 259 ~-~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~ 308 (344)
. .......+ ..+.+.+|+++|.| ++++++.+.
T Consensus 109 ~~~~~~~~~~-----------------~~~~~~~Sa~~~~g-i~~l~~~l~ 141 (142)
T TIGR02528 109 RAKELLETAG-----------------AEPIFEISSVDEQG-LEALVDYLN 141 (142)
T ss_pred HHHHHHHHcC-----------------CCcEEEEecCCCCC-HHHHHHHHh
Confidence 1 11222111 11345578889999 999888764
No 123
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.24 E-value=3.9e-11 Score=106.64 Aligned_cols=195 Identities=15% Similarity=0.097 Sum_probs=97.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchh-------HHH-HHhhcccCCcceeccCCCCCHHHHHHHH
Q 019214 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA-------FDQ-LKQNATKAKIPFYGSYTESDPVRIAVEG 175 (344)
Q Consensus 104 i~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~-------~~~-l~~~~~~~~v~~~~~~~~~~~~~~~~~~ 175 (344)
++++|..|+||||++..+.......|...+....|.++... ... .-.+. ..+.. ..+....... ..
T Consensus 2 v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~-~~~~~--~~~~~~~~~~---~~ 75 (224)
T cd04165 2 VAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFD-SDGEV--VNYPDNHLSE---SD 75 (224)
T ss_pred EEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccC-CCCce--ecCCCCcccc---cc
Confidence 78889999999999999996444445444444444221110 000 00000 00000 0000000000 00
Q ss_pred HHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch--hHHHHHHHHhccCCcCEEEeecCCCC
Q 019214 176 VETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQSVSVGAVIVTKMDGH 253 (344)
Q Consensus 176 l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~--~~~~~~~~~~~~~~~~~lVinK~D~~ 253 (344)
.......++.+.+|||||... +...+..-.....+|.+++|+|+..+. .....+........+.++|+||+|..
T Consensus 76 ~~~~~~~~~~i~liDtpG~~~----~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~ 151 (224)
T cd04165 76 IEICEKSSKLVTFIDLAGHER----YLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLA 151 (224)
T ss_pred ceeeeeCCcEEEEEECCCcHH----HHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECcccc
Confidence 011122367788999999742 222221111113589999999998762 22233333333323458889999986
Q ss_pred CCh--hhHHHHHHH-hC------CCeEEEecCCCCC-----cCcCCChHHHHHHHhCCCChhHHHHHHHh
Q 019214 254 AKG--GGALSAVAA-TK------SPVIFIGTGEHMD-----EFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (344)
Q Consensus 254 ~~~--~~~~~~~~~-~~------~pv~~~~~g~~~~-----~l~~~~~~~~is~~~g~g~i~~l~~~i~~ 309 (344)
... ......+.. .. .|...-+..+.+. ......|.+.+|+.+|+| ++.|++.|..
T Consensus 152 ~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~G-i~~L~~~L~~ 220 (224)
T cd04165 152 PANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEG-LDLLHAFLNL 220 (224)
T ss_pred CHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccC-HHHHHHHHHh
Confidence 432 222222222 22 2332222111111 112233677889999999 9999988764
No 124
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.24 E-value=3.4e-11 Score=116.00 Aligned_cols=153 Identities=16% Similarity=0.198 Sum_probs=84.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHhC
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 182 (344)
-|+++|.|||||||++++|+ +.++.+. . .++++.... ...... ..
T Consensus 160 dVglVG~pNaGKSTLLn~Lt------~ak~kIa-~-----------ypfTTl~Pn--lG~v~~---------------~~ 204 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVS------NAKPKIA-N-----------YHFTTLVPN--LGVVET---------------DD 204 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHH------cCCCccc-c-----------CCcceeceE--EEEEEE---------------eC
Confidence 58999999999999999999 6665542 2 233333211 110000 01
Q ss_pred CCCEEEEcCCCCCcchH---HHHHHHHHhhhhcCCcEEEEEEcCCcc--hhH---HH----HHHHHhc--cCCcCEEEee
Q 019214 183 NCDLIIVDTSGRHKQEA---ALFEEMRQVSEATNPDLVIFVMDSSIG--QAA---FD----QAQAFKQ--SVSVGAVIVT 248 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~---~~~~~l~~~~~~~~~d~illvvda~~~--~~~---~~----~~~~~~~--~~~~~~lVin 248 (344)
+..++++||||...... .+... .+.....++.+++|+|++.. .+. .. .+..+.. ...+..+|+|
T Consensus 205 ~~~~~laD~PGliega~~~~gLg~~--fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~N 282 (424)
T PRK12297 205 GRSFVMADIPGLIEGASEGVGLGHQ--FLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVAN 282 (424)
T ss_pred CceEEEEECCCCcccccccchHHHH--HHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEe
Confidence 46789999999853221 11111 11223357999999998642 111 11 2222222 1245688999
Q ss_pred cCCCCCChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 249 KMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 249 K~D~~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
|+|+..............+. +.+.+|+++|+| +++|+++|.+.+
T Consensus 283 K~DL~~~~e~l~~l~~~l~~------------------~i~~iSA~tgeG-I~eL~~~L~~~l 326 (424)
T PRK12297 283 KMDLPEAEENLEEFKEKLGP------------------KVFPISALTGQG-LDELLYAVAELL 326 (424)
T ss_pred CCCCcCCHHHHHHHHHHhCC------------------cEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 99974332122222222222 234567777777 777777776654
No 125
>PRK10037 cell division protein; Provisional
Probab=99.24 E-value=1.8e-10 Score=104.33 Aligned_cols=143 Identities=12% Similarity=0.080 Sum_probs=81.1
Q ss_pred eEEEEEc-CCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhH-------------HHHH---hh-----cccCCcce
Q 019214 102 SVIMFVG-LQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAF-------------DQLK---QN-----ATKAKIPF 159 (344)
Q Consensus 102 ~ii~ivG-~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~-------------~~l~---~~-----~~~~~v~~ 159 (344)
++|+|.+ +.||||||++.+||..|+++|++|++||+||+..... +.+. .+ ....++.+
T Consensus 2 ~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~q~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 81 (250)
T PRK10037 2 AILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACPDNLLRLSFNVDFTHRQGWARALLDGQDWRDAGLRYTSQLDL 81 (250)
T ss_pred cEEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCChhhhHHHHhCCCccccchHHHHHhcCCCchhhhccccCCeEE
Confidence 4678874 4599999999999999999999999999999754210 0000 00 00123333
Q ss_pred eccCCCCC-----H------HHHHHHHHHHHHh-CCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch
Q 019214 160 YGSYTESD-----P------VRIAVEGVETFKK-ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ 227 (344)
Q Consensus 160 ~~~~~~~~-----~------~~~~~~~l~~~~~-~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~ 227 (344)
........ + ...+.+.+..+.. ..||++||||||..... .. .....+|.+++++.+....
T Consensus 82 ip~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yD~iiIDtpp~~~~~------~~--~al~aaD~vlvpv~~~~~~ 153 (250)
T PRK10037 82 LPFGQLSIEEQENPQHWQTRLGDICSALQQLKASGRYQWILLDLPRGASPL------TR--QLLSLCDHSLAIVNVDANC 153 (250)
T ss_pred EcCCCCCHHHHHHHHHHHHhHHHHHHHHHHhcccCCCCEEEEECCCCccHH------HH--HHHHhCCEEEEEcCcCHHH
Confidence 33211100 0 0012334444431 57999999999875421 11 1123489999999886422
Q ss_pred hHHHHHHHHhccCCcCEEEeecCCCCCC
Q 019214 228 AAFDQAQAFKQSVSVGAVIVTKMDGHAK 255 (344)
Q Consensus 228 ~~~~~~~~~~~~~~~~~lVinK~D~~~~ 255 (344)
..+...... ... ..+++|+++....
T Consensus 154 -~i~~~~~~~-~~~-~~i~~n~~~~~~~ 178 (250)
T PRK10037 154 -HIRLHQQAL-PAG-AHILINDLRIGSQ 178 (250)
T ss_pred -HHhhhcccc-CCC-eEEEEecCCcccH
Confidence 222221111 112 3567899875433
No 126
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=99.23 E-value=2.7e-10 Score=109.87 Aligned_cols=43 Identities=33% Similarity=0.320 Sum_probs=37.9
Q ss_pred CCeEEEEE-cCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcc
Q 019214 100 KPSVIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (344)
Q Consensus 100 ~~~ii~iv-G~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~ 142 (344)
+.++|+|+ .++||||||++.+||..|+..|++|++||+||+..
T Consensus 120 ~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ~~ 163 (405)
T PRK13869 120 HLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQAS 163 (405)
T ss_pred CceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCCCC
Confidence 34788888 45699999999999999999999999999999754
No 127
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.23 E-value=1e-10 Score=100.79 Aligned_cols=159 Identities=14% Similarity=0.076 Sum_probs=86.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
..|+++|++||||||+++.+. +.+...+. |... ....... .
T Consensus 18 ~~i~ivG~~~~GKTsli~~l~------~~~~~~~~--~t~~------------~~~~~~~-------------------~ 58 (184)
T smart00178 18 AKILFLGLDNAGKTTLLHMLK------NDRLAQHQ--PTQH------------PTSEELA-------------------I 58 (184)
T ss_pred CEEEEECCCCCCHHHHHHHHh------cCCCcccC--Cccc------------cceEEEE-------------------E
Confidence 568999999999999999998 55443211 1000 0000000 0
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH---HHHHHhc----cCCcCEEEeecCCCCC
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ----SVSVGAVIVTKMDGHA 254 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~---~~~~~~~----~~~~~~lVinK~D~~~ 254 (344)
.++.+.++||||..... .. .. .....+|.+++|+|++....... ....+.. ...+..+|+||+|...
T Consensus 59 ~~~~~~~~D~~G~~~~~-~~---~~--~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~ 132 (184)
T smart00178 59 GNIKFTTFDLGGHQQAR-RL---WK--DYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY 132 (184)
T ss_pred CCEEEEEEECCCCHHHH-HH---HH--HHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC
Confidence 15678899999975321 11 11 12346899999999976422211 1221211 1235688899999853
Q ss_pred ChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhh
Q 019214 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (344)
Q Consensus 255 ~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~ 310 (344)
... .-+.....+++-.....++. .. .....+.+|+++|+| +++++++|.+.
T Consensus 133 ~~~-~~~i~~~l~l~~~~~~~~~~--~~-~~~~i~~~Sa~~~~g-~~~~~~wl~~~ 183 (184)
T smart00178 133 AAS-EDELRYALGLTNTTGSKGKV--GV-RPLEVFMCSVVRRMG-YGEGFKWLSQY 183 (184)
T ss_pred CCC-HHHHHHHcCCCccccccccc--CC-ceeEEEEeecccCCC-hHHHHHHHHhh
Confidence 211 11222222221100000000 00 122356789999999 99999998764
No 128
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=99.23 E-value=5e-10 Score=101.59 Aligned_cols=143 Identities=20% Similarity=0.203 Sum_probs=83.2
Q ss_pred eEEEEE-cCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchh--------------HHHH----------HhhcccCC
Q 019214 102 SVIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA--------------FDQL----------KQNATKAK 156 (344)
Q Consensus 102 ~ii~iv-G~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~--------------~~~l----------~~~~~~~~ 156 (344)
++|+|+ +++||||||++.+||..+++.|++|++||+|++.+.. .+.+ .......+
T Consensus 2 ~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vlliD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 81 (261)
T TIGR01968 2 RVIVITSGKGGVGKTTTTANLGTALARLGKKVVLIDADIGLRNLDLLLGLENRIVYTLVDVVEGECRLQQALIKDKRLKN 81 (261)
T ss_pred eEEEEecCCCCccHHHHHHHHHHHHHHcCCeEEEEECCCCCCCeeEEeCCCCcCCCCHHHHhcCcCcHHHHhhcCCCCCC
Confidence 578887 5669999999999999999999999999999863211 0100 00001123
Q ss_pred cceeccCCCCC----HHHHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch--hHH
Q 019214 157 IPFYGSYTESD----PVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAF 230 (344)
Q Consensus 157 v~~~~~~~~~~----~~~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~--~~~ 230 (344)
+.+.......+ ....+.+.+..+. ..||+|||||||..... .. .....+|.+++|+.+.... ...
T Consensus 82 l~~l~~~~~~~~~~~~~~~l~~~l~~l~-~~~D~viiD~p~~~~~~--~~------~~l~~aD~viiv~~~~~~s~~~~~ 152 (261)
T TIGR01968 82 LYLLPASQTRDKDAVTPEQMKKLVNELK-EEFDYVIIDCPAGIESG--FR------NAVAPADEAIVVTTPEVSAVRDAD 152 (261)
T ss_pred eEEEeCCCchhhhhCCHHHHHHHHHHHH-HhCCEEEEeCCCCcCHH--HH------HHHHhCCeEEEEcCCCcHHHHHHH
Confidence 33322211111 0122344455554 37999999998865322 11 1123478999999887531 222
Q ss_pred HHHHHHhcc-CCcCEEEeecCCCC
Q 019214 231 DQAQAFKQS-VSVGAVIVTKMDGH 253 (344)
Q Consensus 231 ~~~~~~~~~-~~~~~lVinK~D~~ 253 (344)
.....+... ....++|+|+++..
T Consensus 153 ~~~~~l~~~~~~~~~iviN~~~~~ 176 (261)
T TIGR01968 153 RVIGLLEAKGIEKIHLIVNRLRPE 176 (261)
T ss_pred HHHHHHHHcCCCceEEEEeCcCch
Confidence 222222211 22458899999863
No 129
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.22 E-value=8e-10 Score=96.17 Aligned_cols=125 Identities=20% Similarity=0.179 Sum_probs=69.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEee--cCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC--ADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~--~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
..|+++|.+|+|||||+.+|.......|....... .|... +...++.+...... .+
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~----~E~~rg~Ti~~~~~------------------~~ 60 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAP----EEKARGITINTAHV------------------EY 60 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCCh----hhhhcCccEEeeee------------------Ee
Confidence 45899999999999999999977655554321111 11100 00111111111100 01
Q ss_pred HhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch--hHHHHHHHHhcc-CCcCEEEeecCCCCC
Q 019214 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQS-VSVGAVIVTKMDGHA 254 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~--~~~~~~~~~~~~-~~~~~lVinK~D~~~ 254 (344)
...+..+.||||||.. .+...+ ......+|.+++|+|+..+. ............ .+..++++||+|...
T Consensus 61 ~~~~~~i~~iDtPG~~----~~~~~~--~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~ 132 (195)
T cd01884 61 ETANRHYAHVDCPGHA----DYIKNM--ITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVD 132 (195)
T ss_pred cCCCeEEEEEECcCHH----HHHHHH--HHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCC
Confidence 1236678999999974 233333 22234689999999998762 222233333222 222357799999864
No 130
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.22 E-value=2.5e-11 Score=113.81 Aligned_cols=155 Identities=15% Similarity=0.211 Sum_probs=86.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccC-CcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKA-KIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~-~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
-|+++|.|||||||++++|. +.+.. |+. .++++.. .+.... ..
T Consensus 159 dV~lvG~pnaGKSTLl~~lt------~~~~~-va~-----------y~fTT~~p~ig~v~-~~----------------- 202 (329)
T TIGR02729 159 DVGLVGLPNAGKSTLISAVS------AAKPK-IAD-----------YPFTTLVPNLGVVR-VD----------------- 202 (329)
T ss_pred cEEEEcCCCCCHHHHHHHHh------cCCcc-ccC-----------CCCCccCCEEEEEE-eC-----------------
Confidence 48999999999999999998 55443 333 2233321 111111 00
Q ss_pred CCCCEEEEcCCCCCcchH---HHHHHHHHhhhhcCCcEEEEEEcCCcc-----hhHHH----HHHHHhc--cCCcCEEEe
Q 019214 182 ENCDLIIVDTSGRHKQEA---ALFEEMRQVSEATNPDLVIFVMDSSIG-----QAAFD----QAQAFKQ--SVSVGAVIV 247 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~---~~~~~l~~~~~~~~~d~illvvda~~~-----~~~~~----~~~~~~~--~~~~~~lVi 247 (344)
....+.|+||||...... .+.... +.....++.+++|+|++.. .+... .+..+.. ...+..+|+
T Consensus 203 ~~~~~~i~D~PGli~~a~~~~gLg~~f--lrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~ 280 (329)
T TIGR02729 203 DGRSFVIADIPGLIEGASEGAGLGHRF--LKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVL 280 (329)
T ss_pred CceEEEEEeCCCcccCCcccccHHHHH--HHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEE
Confidence 136789999999853321 111111 1112357899999998753 11111 1222221 124568899
Q ss_pred ecCCCCCChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 248 TKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 248 nK~D~~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
||+|+..... ......... +. + ..+.+.+|+++|+| ++++++.|.+.+
T Consensus 281 NK~DL~~~~~-~~~~~~~l~---------~~---~--~~~vi~iSAktg~G-I~eL~~~I~~~l 328 (329)
T TIGR02729 281 NKIDLLDEEE-LAELLKELK---------KA---L--GKPVFPISALTGEG-LDELLYALAELL 328 (329)
T ss_pred eCccCCChHH-HHHHHHHHH---------HH---c--CCcEEEEEccCCcC-HHHHHHHHHHHh
Confidence 9999865421 111111100 00 0 02345678999999 999999987764
No 131
>PRK10818 cell division inhibitor MinD; Provisional
Probab=99.22 E-value=8.6e-10 Score=100.89 Aligned_cols=162 Identities=12% Similarity=0.130 Sum_probs=90.4
Q ss_pred eEEEEEc-CCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhH--------------HHHHh---------hc-ccCC
Q 019214 102 SVIMFVG-LQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAF--------------DQLKQ---------NA-TKAK 156 (344)
Q Consensus 102 ~ii~ivG-~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~--------------~~l~~---------~~-~~~~ 156 (344)
++|+|++ +.||||||++.+||..+++.|++|++||+|++.+... +.+.. .. ...+
T Consensus 3 kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (270)
T PRK10818 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRTEN 82 (270)
T ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCCCCChhhhhCCCcccccCHHHHhcCCCcHHHhccccCCcCC
Confidence 6788885 5699999999999999999999999999999632210 00000 00 1123
Q ss_pred cceeccCCCCCH----HHHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch--hHH
Q 019214 157 IPFYGSYTESDP----VRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAF 230 (344)
Q Consensus 157 v~~~~~~~~~~~----~~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~--~~~ 230 (344)
+.+.......+. .....+.+..++...||++||||||...... ......+|.+++|++++... ...
T Consensus 83 ~~~lp~~~~~~~~~~~~~~~~~~l~~l~~~~yd~viiD~p~~~~~~~--------~~~l~~ad~vivv~~p~~~sl~~~~ 154 (270)
T PRK10818 83 LYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDSPAGIETGA--------LMALYFADEAIITTNPEVSSVRDSD 154 (270)
T ss_pred EEEecCCCCcchhhhCHHHHHHHHHHHhhcCCCEEEEeCCCCccHHH--------HHHHHhCCeEEEEcCCCchHHHhHH
Confidence 322222111111 0112344555544479999999987654221 11123589999999998541 122
Q ss_pred HHHHHHh---c---c--CCc-CEEEeecCCCCCChh----hHHHHHHHhCCCeE
Q 019214 231 DQAQAFK---Q---S--VSV-GAVIVTKMDGHAKGG----GALSAVAATKSPVI 271 (344)
Q Consensus 231 ~~~~~~~---~---~--~~~-~~lVinK~D~~~~~~----~~~~~~~~~~~pv~ 271 (344)
.....+. . . ..+ .++|+|+++...... ...+.....+.|+.
T Consensus 155 ~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~~~~~~~~~~~~~~~~~~~g~~~~ 208 (270)
T PRK10818 155 RILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKLV 208 (270)
T ss_pred HHHHHHHHhhccccccccccceEEEEeccCHhhhhhcccccHHHHHHHhCCcEE
Confidence 2222211 1 1 111 378899998653211 12334444676654
No 132
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=99.22 E-value=2.6e-10 Score=97.89 Aligned_cols=163 Identities=18% Similarity=0.181 Sum_probs=90.8
Q ss_pred eEEEEE-cCCCCCHHHHHHHHHHHHHHcCCccEEeecCcC-cch-------------hH---------HH-HHhhcccCC
Q 019214 102 SVIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF-RAG-------------AF---------DQ-LKQNATKAK 156 (344)
Q Consensus 102 ~ii~iv-G~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~-~~~-------------~~---------~~-l~~~~~~~~ 156 (344)
++|+++ |+.||||||+.++|+..|++.|++|++||.|.- |.- .+ .| |...-...+
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLRNLDlimGlE~RiVYd~vdVi~g~~~l~QALIkDKr~~n 82 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRNLDLIMGLENRIVYDLVDVIEGEATLNQALIKDKRLEN 82 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCchhhhhhhcccceeeeeehhhhcCccchhhHhhccccCCc
Confidence 456665 999999999999999999999999999999971 100 01 11 111111112
Q ss_pred cceeccCCC--CC--HHHHHHHHHHHHHhCCCCEEEEcCC-CCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc--hhH
Q 019214 157 IPFYGSYTE--SD--PVRIAVEGVETFKKENCDLIIVDTS-GRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QAA 229 (344)
Q Consensus 157 v~~~~~~~~--~~--~~~~~~~~l~~~~~~~~d~vlIDT~-G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~--~~~ 229 (344)
+-+...... ++ ..+-....+.+++..+||||++|+| |+.... ..+...+|..++|..|... .+.
T Consensus 83 L~lLPAsQtrdKdalt~E~v~~vv~eL~~~~fDyIi~DsPAGIE~G~---------~~A~~~Ad~AiVVtnPEvSsVRDs 153 (272)
T COG2894 83 LFLLPASQTRDKDALTPEGVKKVVNELKAMDFDYIIIDSPAGIEQGF---------KNAVYFADEAIVVTNPEVSSVRDS 153 (272)
T ss_pred eEecccccccCcccCCHHHHHHHHHHHHhcCCCEEEecCcchHHHHH---------HhhhhccceEEEEcCCCccccccc
Confidence 111111111 11 1122334455665569999999995 443221 1234467889999888543 222
Q ss_pred HH---HHHHHh-----ccCCcCEEEeecCCCCC-ChhhH---HHHHHHhCCCeEEE
Q 019214 230 FD---QAQAFK-----QSVSVGAVIVTKMDGHA-KGGGA---LSAVAATKSPVIFI 273 (344)
Q Consensus 230 ~~---~~~~~~-----~~~~~~~lVinK~D~~~-~~~~~---~~~~~~~~~pv~~~ 273 (344)
.. .+.... .......+++|+++... ..|.. -+....+.+|+.-+
T Consensus 154 DRiiGlLesk~~rae~~~~~~~~llvnR~~p~~v~~GeMlsv~Dv~~iL~i~liGi 209 (272)
T COG2894 154 DRIIGLLESKSRRAEIGEEPKEHLLLNRYRPEMVKRGEMLSVEDVLEILSIPLIGV 209 (272)
T ss_pred hhheeehhcccchhhcCCcccceEEEEccCHHHhccCCcccHHHHHHHhCCceEEe
Confidence 21 111111 11112478999998631 22333 35556677887665
No 133
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.21 E-value=8.3e-11 Score=102.47 Aligned_cols=118 Identities=17% Similarity=0.192 Sum_probs=69.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHhC
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 182 (344)
.|+++|+|||||||++|.|+ |.++.....+.. ..+.. +..... ...
T Consensus 2 ~i~lvG~~g~GKSsl~N~il------g~~~~~~~~~~~----------~~T~~-~~~~~~-----------------~~~ 47 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTIL------GREVFESKLSAS----------SVTKT-CQKESA-----------------VWD 47 (196)
T ss_pred EEEEECCCCCCHHHHHHHhh------CCCccccccCCC----------Ccccc-cceeeE-----------------EEC
Confidence 48999999999999999999 877664443110 00110 000000 012
Q ss_pred CCCEEEEcCCCCCcch---HHHHHHHHHhh--hhcCCcEEEEEEcCCcc-hhHHHHHHHHhcc-----CCcCEEEeecCC
Q 019214 183 NCDLIIVDTSGRHKQE---AALFEEMRQVS--EATNPDLVIFVMDSSIG-QAAFDQAQAFKQS-----VSVGAVIVTKMD 251 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~---~~~~~~l~~~~--~~~~~d~illvvda~~~-~~~~~~~~~~~~~-----~~~~~lVinK~D 251 (344)
+..+.+|||||..... .....++.... ....+|.+++|+++... ......+..+.+. ....++|+|++|
T Consensus 48 ~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d 127 (196)
T cd01852 48 GRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGRFTEEEEQAVETLQELFGEKVLDHTIVLFTRGD 127 (196)
T ss_pred CeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChHhHhcEEEEEECcc
Confidence 5678999999986542 23333332222 12367899999998752 2233333333322 134578899999
Q ss_pred CCC
Q 019214 252 GHA 254 (344)
Q Consensus 252 ~~~ 254 (344)
...
T Consensus 128 ~l~ 130 (196)
T cd01852 128 DLE 130 (196)
T ss_pred ccC
Confidence 764
No 134
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.21 E-value=2.6e-10 Score=103.74 Aligned_cols=145 Identities=19% Similarity=0.139 Sum_probs=85.1
Q ss_pred eEEEEE-cCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHh-----------------hcccCCcc---ee
Q 019214 102 SVIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQ-----------------NATKAKIP---FY 160 (344)
Q Consensus 102 ~ii~iv-G~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~-----------------~~~~~~v~---~~ 160 (344)
++|+++ |++|+||||++.+||..+++.|++|+++|+|.+.+....-+.. .....++. +.
T Consensus 58 ~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD~~gps~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~lsi~ 137 (265)
T COG0489 58 NVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPSIPRMLGLENLPGLTELLAGEALEPVIQHDGIKVLSIL 137 (265)
T ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEEeCcCCCCchHHHhCCCCCCCcccccCCCccccceecCccceEEEE
Confidence 455554 8889999999999999999999999999999877654322111 00001111 10
Q ss_pred c-cCCCCCHH-----HHHHHHHHHHHhCCCCEEEEcCCCCCcc-hHHHHHHHHHhhhhcCCcEEEEEEcCCcc-h-hHHH
Q 019214 161 G-SYTESDPV-----RIAVEGVETFKKENCDLIIVDTSGRHKQ-EAALFEEMRQVSEATNPDLVIFVMDSSIG-Q-AAFD 231 (344)
Q Consensus 161 ~-~~~~~~~~-----~~~~~~l~~~~~~~~d~vlIDT~G~~~~-~~~~~~~l~~~~~~~~~d~illvvda~~~-~-~~~~ 231 (344)
. .....++. ....+.+.+....+||++|||||+.... +... . ...+|.+++|..+... . +...
T Consensus 138 ~~~~~p~~~r~~l~s~~~~qll~~~~~~~~D~vIID~PP~~g~~d~~i-------~-~~~~~g~viVt~p~~~~~~~v~k 209 (265)
T COG0489 138 PLGPVPVIPRGLLGSKAMLQLLEDVLWGEYDYVIIDTPPGTGDADATV-------L-QRIPDGVVIVTTPGKTALEDVKK 209 (265)
T ss_pred ecCCCCCCChHhhhhHHHHHHHHHHhccCCCEEEEeCCCCchHHHHHH-------H-hccCCeEEEEeCCccchHHHHHH
Confidence 0 01112222 2234445556666699999999876432 2111 1 1235677777776533 2 2222
Q ss_pred HHHHHhc-cCCcCEEEeecCCCCC
Q 019214 232 QAQAFKQ-SVSVGAVIVTKMDGHA 254 (344)
Q Consensus 232 ~~~~~~~-~~~~~~lVinK~D~~~ 254 (344)
....+.+ ..++.|+|.|+.+...
T Consensus 210 a~~~~~~~~~~vlGvv~Nm~~~~~ 233 (265)
T COG0489 210 AIDMLEKAGIPVLGVVENMSYFIC 233 (265)
T ss_pred HHHHHHhcCCceEEEEecCccCcc
Confidence 3334433 2457799999877643
No 135
>PRK13236 nitrogenase reductase; Reviewed
Probab=99.20 E-value=4e-10 Score=104.43 Aligned_cols=42 Identities=26% Similarity=0.243 Sum_probs=39.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCc
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~ 141 (344)
..++++|.|+.||||||++.+||..|++.|++|+++|+|++.
T Consensus 5 ~~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~q~ 46 (296)
T PRK13236 5 NIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKA 46 (296)
T ss_pred CceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccCCC
Confidence 347899999999999999999999999999999999999954
No 136
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=99.20 E-value=3.4e-10 Score=93.11 Aligned_cols=112 Identities=24% Similarity=0.267 Sum_probs=74.5
Q ss_pred EEEE-cCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHhC
Q 019214 104 IMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (344)
Q Consensus 104 i~iv-G~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 182 (344)
|+++ |++|+||||++.+++..++.+|.++.++|.|++.+. +
T Consensus 2 i~~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~-------------~------------------------- 43 (139)
T cd02038 2 IAVTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLAN-------------L------------------------- 43 (139)
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCC-------------C-------------------------
Confidence 4444 778999999999999999999999999999975431 0
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch--hHHHHHHHHhc--cCCcCEEEeecCCCCCChhh
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQ--SVSVGAVIVTKMDGHAKGGG 258 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~--~~~~~~~~~~~--~~~~~~lVinK~D~~~~~~~ 258 (344)
+||+++||||+..... .. . ....+|.+++|++++... ........+.. .....++|+|+++.......
T Consensus 44 ~yd~VIiD~p~~~~~~--~~----~--~l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~~~~~~ 115 (139)
T cd02038 44 DYDYIIIDTGAGISDN--VL----D--FFLAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESPKEGKK 115 (139)
T ss_pred CCCEEEEECCCCCCHH--HH----H--HHHhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCHHHHHH
Confidence 2899999998864322 11 1 123479999999987542 22222222221 12345799999986544333
Q ss_pred HHH
Q 019214 259 ALS 261 (344)
Q Consensus 259 ~~~ 261 (344)
..+
T Consensus 116 ~~~ 118 (139)
T cd02038 116 VFK 118 (139)
T ss_pred HHH
Confidence 333
No 137
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.20 E-value=1.2e-10 Score=98.26 Aligned_cols=108 Identities=16% Similarity=0.069 Sum_probs=60.7
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH---HHHHHhc----cCCcCEEEeecCCCCCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ----SVSVGAVIVTKMDGHAK 255 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~---~~~~~~~----~~~~~~lVinK~D~~~~ 255 (344)
++.+.++||||...... ... .....+|.+++|+|++....... ....+.. ...+..+|+||+|....
T Consensus 49 ~~~~~l~Dt~G~~~~~~----~~~--~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~ 122 (167)
T cd04160 49 NARLKFWDLGGQESLRS----LWD--KYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA 122 (167)
T ss_pred CEEEEEEECCCChhhHH----HHH--HHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC
Confidence 57789999999753221 111 11346899999999876422211 1222111 12356888999997543
Q ss_pred hh--hHHHHHHHhCCCeEEEecCCCCCcCc-CCChHHHHHHHhCCCChhHHHHHHHh
Q 019214 256 GG--GALSAVAATKSPVIFIGTGEHMDEFE-VFDVKPFVSRLLGMGDWSGFMDKIHE 309 (344)
Q Consensus 256 ~~--~~~~~~~~~~~pv~~~~~g~~~~~l~-~~~~~~~is~~~g~g~i~~l~~~i~~ 309 (344)
.. .....+. .....+. ...+.+.+|+++|+| +++++++|.+
T Consensus 123 ~~~~~~~~~~~------------~~~~~~~~~~~~~~~~Sa~~g~g-v~e~~~~l~~ 166 (167)
T cd04160 123 LSVEEIKEVFQ------------DKAEEIGRRDCLVLPVSALEGTG-VREGIEWLVE 166 (167)
T ss_pred CCHHHHHHHhc------------cccccccCCceEEEEeeCCCCcC-HHHHHHHHhc
Confidence 21 1111111 1000111 112456789999999 9999988754
No 138
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=99.20 E-value=3e-10 Score=88.96 Aligned_cols=74 Identities=24% Similarity=0.275 Sum_probs=56.8
Q ss_pred EEEE-cCCCCCHHHHHHHHHHHHHHc-CCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 104 IMFV-GLQGSGKTTTCTKYAYYHQKK-GWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 104 i~iv-G~~GvGKTTl~~~La~~l~~~-g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
|+++ +++|+||||++.+|+..++.. |++|.++|.|+++.
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~--------------------------------------- 42 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFG--------------------------------------- 42 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCC---------------------------------------
Confidence 5565 555999999999999999997 99999999998743
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG 226 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~ 226 (344)
.|+++|||||...... ..+ ...+|.+++|++++..
T Consensus 43 --~D~IIiDtpp~~~~~~------~~~--l~~aD~vlvvv~~~~~ 77 (106)
T cd03111 43 --DDYVVVDLGRSLDEVS------LAA--LDQADRVFLVTQQDLP 77 (106)
T ss_pred --CCEEEEeCCCCcCHHH------HHH--HHHcCeEEEEecCChH
Confidence 1789999988654221 111 2247899999998754
No 139
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.20 E-value=2.1e-10 Score=99.45 Aligned_cols=159 Identities=20% Similarity=0.184 Sum_probs=85.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCc-cEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWK-PALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~-v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
...|+++|.+||||||++++|+ +.+ +.-++. ....++ .+.++.
T Consensus 24 ~~~v~ivG~~~~GKSsli~~l~------~~~~~~~~~~-----------~~~~t~-~~~~~~------------------ 67 (196)
T PRK00454 24 GPEIAFAGRSNVGKSSLINALT------NRKNLARTSK-----------TPGRTQ-LINFFE------------------ 67 (196)
T ss_pred CCEEEEEcCCCCCHHHHHHHHh------CCCCcccccC-----------CCCcee-EEEEEe------------------
Confidence 3569999999999999999999 643 333332 111111 111111
Q ss_pred HhCCCCEEEEcCCCCCcc--h---HHHHHH-HHHhhh-hcCCcEEEEEEcCCcchhH--HHHHHHHhccCCcCEEEeecC
Q 019214 180 KKENCDLIIVDTSGRHKQ--E---AALFEE-MRQVSE-ATNPDLVIFVMDSSIGQAA--FDQAQAFKQSVSVGAVIVTKM 250 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~--~---~~~~~~-l~~~~~-~~~~d~illvvda~~~~~~--~~~~~~~~~~~~~~~lVinK~ 250 (344)
.+.++.|+||||.... . ...... +..... ....+.+++|+|++.+... ......+.....+..++.||+
T Consensus 68 --~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~ 145 (196)
T PRK00454 68 --VNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKA 145 (196)
T ss_pred --cCCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECc
Confidence 0356899999996321 1 111111 111111 1234678888887754222 122233332223347889999
Q ss_pred CCCCChh--hHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 251 DGHAKGG--GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 251 D~~~~~~--~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
|...... .....+.. .+... ..+.+.+|++.|+| ++++.+.|.+.+.
T Consensus 146 Dl~~~~~~~~~~~~i~~------------~l~~~--~~~~~~~Sa~~~~g-i~~l~~~i~~~~~ 194 (196)
T PRK00454 146 DKLKKGERKKQLKKVRK------------ALKFG--DDEVILFSSLKKQG-IDELRAAIAKWLA 194 (196)
T ss_pred ccCCHHHHHHHHHHHHH------------HHHhc--CCceEEEEcCCCCC-HHHHHHHHHHHhc
Confidence 9865321 11111111 00000 12344678889999 9999999987764
No 140
>PRK11519 tyrosine kinase; Provisional
Probab=99.20 E-value=8.2e-10 Score=114.16 Aligned_cols=147 Identities=20% Similarity=0.243 Sum_probs=92.6
Q ss_pred CCeEEEEEc-CCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHH------------HH---------hhcccCCc
Q 019214 100 KPSVIMFVG-LQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQ------------LK---------QNATKAKI 157 (344)
Q Consensus 100 ~~~ii~ivG-~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~------------l~---------~~~~~~~v 157 (344)
+.++|+|+| .||+||||++.+||..++..|++|++||+|++++..... +. ......++
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~~~~~~~~~~~~~gl~~~l~~~~~l~~~i~~~~~~~l 604 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSIANF 604 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCcHHHHhCCCCCCCHHHHhCCCCCHHHhecccCcCCE
Confidence 458999998 559999999999999999999999999999876542211 11 11112344
Q ss_pred ceeccC-CCCCHHHHH-----HHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc-hhH-
Q 019214 158 PFYGSY-TESDPVRIA-----VEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG-QAA- 229 (344)
Q Consensus 158 ~~~~~~-~~~~~~~~~-----~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~-~~~- 229 (344)
.+.... ...++.+.+ .+.+..++ ..||+||||||+.....+... + ...+|.+++|+.+... ...
T Consensus 605 ~~lp~g~~~~~~~ell~s~~~~~ll~~l~-~~yD~ViiDtpP~~~v~Da~~-----l--~~~~d~~l~Vvr~~~t~~~~~ 676 (719)
T PRK11519 605 DLIPRGQVPPNPSELLMSERFAELVNWAS-KNYDLVLIDTPPILAVTDAAI-----V--GRHVGTTLMVARYAVNTLKEV 676 (719)
T ss_pred EEEeCCCCCCCHHHHhhHHHHHHHHHHHH-hcCCEEEEeCCCcccchHHHH-----H--HHHCCeEEEEEeCCCCCHHHH
Confidence 443322 233444432 22344443 589999999999865432220 1 2247899999987543 222
Q ss_pred HHHHHHHhc-cCCcCEEEeecCCCCC
Q 019214 230 FDQAQAFKQ-SVSVGAVIVTKMDGHA 254 (344)
Q Consensus 230 ~~~~~~~~~-~~~~~~lVinK~D~~~ 254 (344)
......+.. ..++.|+|+|+++...
T Consensus 677 ~~~~~~l~~~~~~~~G~VlN~v~~~~ 702 (719)
T PRK11519 677 ETSLSRFEQNGIPVKGVILNSIFRRA 702 (719)
T ss_pred HHHHHHHHhCCCCeEEEEEeCCccCc
Confidence 223333332 3566899999997543
No 141
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=99.19 E-value=3.2e-10 Score=102.76 Aligned_cols=39 Identities=36% Similarity=0.375 Sum_probs=36.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcC
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~ 140 (344)
+++.+.|++|+||||++.++|..+++.|++|++|++|+.
T Consensus 1 ~~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~ 39 (254)
T cd00550 1 RYIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA 39 (254)
T ss_pred CEEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc
Confidence 368889999999999999999999999999999999995
No 142
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=99.19 E-value=1.5e-09 Score=104.46 Aligned_cols=136 Identities=18% Similarity=0.136 Sum_probs=73.6
Q ss_pred hHhHHHHHHHHHHHhhccccc--ChhhhHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcccccc--cCCChHHHHHHH
Q 019214 3 LAQLGGSISRAIQQMSNATII--DEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLA--AGHNKRRIIQQA 78 (344)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 78 (344)
+.+++...+.++..+++..-- .++... .=.+.+.=...|++.........+- .....++-. ......+.+ ..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~p~~~k~~~--~~~i~eva~~~gv~~~tlr~~e~~~-~~~~~~r~~~g~r~yt~~di-~~ 79 (387)
T TIGR03453 4 IAAQARELSEQLQALRERLFPPNARKTLR--KFTSGEVAKLLGVSDSYLRQLSLEG-KGPEPETLSNGRRSYTLEQI-NE 79 (387)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccccccc--cCCHHHHHHHHCcCHHHHHHHHHcC-CCCCCCcCCCCceeeCHHHH-HH
Confidence 567788888888888763211 122111 0133344445677777766542211 100000100 011112222 34
Q ss_pred HHHHHHhhcCCCCC--CCCCCCCCCeEEEEE-cCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcc
Q 019214 79 IFNELCKMLDPGKP--SFTPKKGKPSVIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (344)
Q Consensus 79 l~~~l~~~l~~~~~--~~~~~~~~~~ii~iv-G~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~ 142 (344)
++..+......... +......+.++|+|+ .++||||||++.+||..|+..|++|++||+||+..
T Consensus 80 l~~~~~~~~~~~~~~~~~r~~g~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~DpQ~~ 146 (387)
T TIGR03453 80 LRRHLAQRGREARRYLPHRRGGEHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDPQAS 146 (387)
T ss_pred HHHHHHhccccccccCCCcCCCCCceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCC
Confidence 44433332211111 111112345788887 55599999999999999999999999999999754
No 143
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=99.19 E-value=3.6e-10 Score=108.19 Aligned_cols=44 Identities=20% Similarity=0.262 Sum_probs=38.0
Q ss_pred CCCeEEEEEc-CCCCCHHHHHHHHHHHHHHcCCccEEeec-CcCcc
Q 019214 99 GKPSVIMFVG-LQGSGKTTTCTKYAYYHQKKGWKPALVCA-DTFRA 142 (344)
Q Consensus 99 ~~~~ii~ivG-~~GvGKTTl~~~La~~l~~~g~~v~iv~~-D~~~~ 142 (344)
.+.++|+|++ ++||||||++.+||..|+..|++|++||+ |||..
T Consensus 104 ~~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlIDl~DpQ~n 149 (387)
T PHA02519 104 KNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIEGNDPQGT 149 (387)
T ss_pred CCceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEeCCCCCCC
Confidence 3467888884 45999999999999999999999999995 99754
No 144
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.19 E-value=3.8e-10 Score=99.29 Aligned_cols=66 Identities=27% Similarity=0.358 Sum_probs=39.1
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH--HHHHHHHhc-cCCcCEEEeecCCCCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFKQ-SVSVGAVIVTKMDGHA 254 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~--~~~~~~~~~-~~~~~~lVinK~D~~~ 254 (344)
+..+.|+||||... +...+ ......+|.+++|+|++.+... ......... ..+..++|+||+|...
T Consensus 76 ~~~~~liDTpG~~~----~~~~~--~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~ 144 (208)
T cd04166 76 KRKFIIADTPGHEQ----YTRNM--VTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVD 144 (208)
T ss_pred CceEEEEECCcHHH----HHHHH--HHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhccc
Confidence 67889999999742 22222 1223468999999999876321 111111111 1233356799999864
No 145
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=99.19 E-value=1.6e-10 Score=105.44 Aligned_cols=40 Identities=23% Similarity=0.234 Sum_probs=36.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcc
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~ 142 (344)
++|+++|++||||||++.+||..|++.| +|++||+||+..
T Consensus 3 ~~iav~~KGGvGKTT~a~nLA~~La~~G-rVLliD~Dpq~~ 42 (264)
T PRK13231 3 KKIAIYGKGGIGKSTTVSNMAAAYSNDH-RVLVIGCDPKAD 42 (264)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCCC-EEEEEeEccCcc
Confidence 6788889999999999999999999999 999999999753
No 146
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.19 E-value=1.8e-10 Score=115.95 Aligned_cols=131 Identities=22% Similarity=0.146 Sum_probs=71.3
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHhCCCCEE
Q 019214 108 GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLI 187 (344)
Q Consensus 108 G~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~d~v 187 (344)
|.|||||||++|+|. |.+.. ++. .+..+.......... ++..+.
T Consensus 1 G~pNvGKSSL~N~Lt------g~~~~-v~n-----------~pG~Tv~~~~~~i~~------------------~~~~i~ 44 (591)
T TIGR00437 1 GNPNVGKSTLFNALT------GANQT-VGN-----------WPGVTVEKKEGKLGF------------------QGEDIE 44 (591)
T ss_pred CCCCCCHHHHHHHHh------CCCCe-ecC-----------CCCeEEEEEEEEEEE------------------CCeEEE
Confidence 889999999999998 66542 222 111221111000001 145678
Q ss_pred EEcCCCCCcchHH-HHHHH-HHhhhhcCCcEEEEEEcCCcchhHHHHHHHHhccCCcCEEEeecCCCCCChhh---HHHH
Q 019214 188 IVDTSGRHKQEAA-LFEEM-RQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGG---ALSA 262 (344)
Q Consensus 188 lIDT~G~~~~~~~-~~~~l-~~~~~~~~~d~illvvda~~~~~~~~~~~~~~~~~~~~~lVinK~D~~~~~~~---~~~~ 262 (344)
++||||....... ..+.+ +.......+|.+++|+|++.............+...+..+|+||+|+....+. ....
T Consensus 45 lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~ler~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L 124 (591)
T TIGR00437 45 IVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLERNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKL 124 (591)
T ss_pred EEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcchhhHHHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHHH
Confidence 9999997543211 11112 22222346899999999987544333333333333456889999998643221 1222
Q ss_pred HHHhCCCeEEEe
Q 019214 263 VAATKSPVIFIG 274 (344)
Q Consensus 263 ~~~~~~pv~~~~ 274 (344)
....+.|+..++
T Consensus 125 ~~~lg~pvv~tS 136 (591)
T TIGR00437 125 EERLGVPVVPTS 136 (591)
T ss_pred HHHcCCCEEEEE
Confidence 333455555554
No 147
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.18 E-value=2.1e-10 Score=96.02 Aligned_cols=151 Identities=18% Similarity=0.119 Sum_probs=80.9
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHhCC
Q 019214 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKEN 183 (344)
Q Consensus 104 i~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~ 183 (344)
|+++|++||||||+++++. +.+.. ..-| + .+..+...... .+
T Consensus 2 i~i~G~~~~GKTsl~~~~~------~~~~~--~~~~-------------t-~~~~~~~~~~~----------------~~ 43 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLK------HAELV--TTIP-------------T-VGFNVEMLQLE----------------KH 43 (160)
T ss_pred EEEEcCCCCCHHHHHHHHh------cCCcc--cccC-------------c-cCcceEEEEeC----------------Cc
Confidence 7899999999999999998 54431 1100 0 01111000000 14
Q ss_pred CCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH---HHHH-Hhc---cCCcCEEEeecCCCCCCh
Q 019214 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQA-FKQ---SVSVGAVIVTKMDGHAKG 256 (344)
Q Consensus 184 ~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~---~~~~-~~~---~~~~~~lVinK~D~~~~~ 256 (344)
+.+.++||||...... ... .....+|.+++|+|++....... .... +.. ...+..+|+||+|.....
T Consensus 44 ~~l~i~D~~G~~~~~~----~~~--~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 117 (160)
T cd04156 44 LSLTVWDVGGQEKMRT----VWK--CYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL 117 (160)
T ss_pred eEEEEEECCCCHhHHH----HHH--HHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc
Confidence 6788999999743211 111 11335799999999986532111 1111 111 123558899999985421
Q ss_pred hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHh
Q 019214 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (344)
Q Consensus 257 ~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~ 309 (344)
. ........+. +.... ....+.+.+|+++|+| +++++++|.+
T Consensus 118 ~-~~~i~~~~~~--------~~~~~-~~~~~~~~~Sa~~~~g-v~~~~~~i~~ 159 (160)
T cd04156 118 T-AEEITRRFKL--------KKYCS-DRDWYVQPCSAVTGEG-LAEAFRKLAS 159 (160)
T ss_pred C-HHHHHHHcCC--------cccCC-CCcEEEEecccccCCC-hHHHHHHHhc
Confidence 1 1111111110 11100 0111345689999999 9999988753
No 148
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.18 E-value=7.8e-11 Score=99.97 Aligned_cols=152 Identities=17% Similarity=0.169 Sum_probs=82.0
Q ss_pred EEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHhC-CC
Q 019214 106 FVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE-NC 184 (344)
Q Consensus 106 ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~-~~ 184 (344)
++|++||||||++++|+ |.++ .+.. .+.++..... .... .. +.
T Consensus 1 iiG~~~~GKStll~~l~------~~~~-~~~~-----------~~~~t~~~~~--~~~~----------------~~~~~ 44 (176)
T cd01881 1 LVGLPNVGKSTLLNALT------NAKP-KVAN-----------YPFTTLEPNL--GVVE----------------VPDGA 44 (176)
T ss_pred CCCCCCCcHHHHHHHHh------cCCc-cccC-----------CCceeecCcc--eEEE----------------cCCCC
Confidence 57999999999999999 7654 2222 1111111000 0000 01 56
Q ss_pred CEEEEcCCCCCcchH---HHHHHHHHhhhhcCCcEEEEEEcCCcch-----hHHH-------HHHHHhc-------cCCc
Q 019214 185 DLIIVDTSGRHKQEA---ALFEEMRQVSEATNPDLVIFVMDSSIGQ-----AAFD-------QAQAFKQ-------SVSV 242 (344)
Q Consensus 185 d~vlIDT~G~~~~~~---~~~~~l~~~~~~~~~d~illvvda~~~~-----~~~~-------~~~~~~~-------~~~~ 242 (344)
.+.++||||...... .+...+ ......+|.+++|+|++... +..+ ....... ...+
T Consensus 45 ~~~i~DtpG~~~~~~~~~~~~~~~--~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 122 (176)
T cd01881 45 RIQVADIPGLIEGASEGRGLGNQF--LAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKP 122 (176)
T ss_pred eEEEEeccccchhhhcCCCccHHH--HHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCC
Confidence 779999999743211 111111 11233589999999987542 1111 1111111 1245
Q ss_pred CEEEeecCCCCCChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhh
Q 019214 243 GAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (344)
Q Consensus 243 ~~lVinK~D~~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~ 310 (344)
..+|+||+|.............. .......+.+.+|+..|+| ++++.+.+...
T Consensus 123 ~ivv~NK~Dl~~~~~~~~~~~~~--------------~~~~~~~~~~~~Sa~~~~g-l~~l~~~l~~~ 175 (176)
T cd01881 123 VIYVLNKIDLDDAEELEEELVRE--------------LALEEGAEVVPISAKTEEG-LDELIRAIYEL 175 (176)
T ss_pred eEEEEEchhcCchhHHHHHHHHH--------------HhcCCCCCEEEEehhhhcC-HHHHHHHHHhh
Confidence 68889999986543221110000 0011223456789999999 99999887553
No 149
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=99.17 E-value=2.5e-10 Score=97.96 Aligned_cols=148 Identities=19% Similarity=0.237 Sum_probs=83.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchh-HHHHHhhcccCCcceeccCCC---CCHHHHHHHHHHH
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA-FDQLKQNATKAKIPFYGSYTE---SDPVRIAVEGVET 178 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~-~~~l~~~~~~~~v~~~~~~~~---~~~~~~~~~~l~~ 178 (344)
++.+.|..||||||+++++.. ....|.+++++-+|.-..+- .+.+... ++++.....+ -.........+..
T Consensus 2 v~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI~ne~g~~~iD~~~l~~~----~~~v~~l~~gcicc~~~~~~~~~l~~ 76 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLK-RNRQGERVAVIVNEFGEVNIDAELLQED----GVPVVELNNGCICCTLRDDLVEALRR 76 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEEEECSTTSTHHHHHHHHTT----T-EEEEECTTTESS-TTS-HHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH-HhcCCceeEEEEccccccccchhhhccc----ceEEEEecCCCcccccHHHHHHHHHH
Confidence 688999999999999999998 66679999999998765443 2223322 2222111110 0011122234444
Q ss_pred HHh-C--CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHHHHHHHhcc-CCcCEEEeecCCCCC
Q 019214 179 FKK-E--NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQS-VSVGAVIVTKMDGHA 254 (344)
Q Consensus 179 ~~~-~--~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~~~~~~~~~-~~~~~lVinK~D~~~ 254 (344)
+.. . ++|++||.+.|...+..- ...-..+......+.++.|+|+..-.........+..+ ...+.+|+||+|..+
T Consensus 77 l~~~~~~~~d~IiIE~sG~a~p~~l-~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~ADvIvlnK~D~~~ 155 (178)
T PF02492_consen 77 LLREYEERPDRIIIETSGLADPAPL-ILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFADVIVLNKIDLVS 155 (178)
T ss_dssp HCCCCHGC-SEEEEEEECSSGGGGH-HHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-SEEEEE-GGGHH
T ss_pred HHHhcCCCcCEEEECCccccccchh-hhccccccccccccceeEEeccccccccccchhhhhhcchhcCEEEEeccccCC
Confidence 433 2 589999999998765433 11122233344668899999996532111111111111 223689999999976
Q ss_pred Ch
Q 019214 255 KG 256 (344)
Q Consensus 255 ~~ 256 (344)
..
T Consensus 156 ~~ 157 (178)
T PF02492_consen 156 DE 157 (178)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 150
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=99.17 E-value=1.1e-09 Score=113.29 Aligned_cols=148 Identities=20% Similarity=0.203 Sum_probs=92.9
Q ss_pred CCeEEEEEcCC-CCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHH---------------------hhcccCCc
Q 019214 100 KPSVIMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLK---------------------QNATKAKI 157 (344)
Q Consensus 100 ~~~ii~ivG~~-GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~---------------------~~~~~~~v 157 (344)
++++|+|+|+. |+||||++.+||..++..|++|++||+|++++.....+. ......++
T Consensus 530 ~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~l 609 (726)
T PRK09841 530 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGGF 609 (726)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCcHHHHcCCCCCCCHHHHhCCCCCHHHheeccCCCCE
Confidence 45889999866 999999999999999999999999999998764322110 00011234
Q ss_pred ceeccCC-CCCHHHH-----HHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc--hhH
Q 019214 158 PFYGSYT-ESDPVRI-----AVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QAA 229 (344)
Q Consensus 158 ~~~~~~~-~~~~~~~-----~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~--~~~ 229 (344)
.+..... ..++... +...+.+++ ..||+||||||+.....+... + ...+|.+++|+.+... ...
T Consensus 610 ~vl~~g~~~~~p~ell~~~~~~~ll~~l~-~~yD~IIIDtPP~~~~~Da~~-----l--a~~ad~~llVvr~~~t~~~~~ 681 (726)
T PRK09841 610 DVITRGQVPPNPSELLMRDRMRQLLEWAN-DHYDLVIVDTPPMLAVSDAAV-----V--GRSVGTSLLVARFGLNTAKEV 681 (726)
T ss_pred EEEeCCCCCCCHHHHhCcHHHHHHHHHHH-hcCCEEEEeCCCccccchHHH-----H--HHhCCeEEEEEeCCCCCHHHH
Confidence 4333221 2334433 223344443 479999999999865432211 1 2246888888886543 233
Q ss_pred HHHHHHHhc-cCCcCEEEeecCCCCCC
Q 019214 230 FDQAQAFKQ-SVSVGAVIVTKMDGHAK 255 (344)
Q Consensus 230 ~~~~~~~~~-~~~~~~lVinK~D~~~~ 255 (344)
......+.. ...+.|+|+|+++....
T Consensus 682 ~~~~~~l~~~~~~~~G~VlN~~~~~~~ 708 (726)
T PRK09841 682 SLSMQRLEQAGVNIKGAILNGVIKRAS 708 (726)
T ss_pred HHHHHHHHhCCCceEEEEEeCcccCcc
Confidence 333444432 34567999999986543
No 151
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=99.17 E-value=5.9e-10 Score=93.72 Aligned_cols=144 Identities=21% Similarity=0.254 Sum_probs=81.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccC-------CCCCHHHHHHHH
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSY-------TESDPVRIAVEG 175 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~-------~~~~~~~~~~~~ 175 (344)
++.++|+.|+||||++.+++... .|.+++++..|....+--.+.... .+.+++... ...+....+.+.
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~~--~~~~~~~i~~~~G~~~~d~~~~~~---~~~~v~~l~~GCiCC~~~~~l~~~l~~l 76 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTEQ--HGRKIAVIENEFGEVGIDNQLVVD---TDEEIIEMNNGCICCTVRGDLIRALLDL 76 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhcc--cCCcEEEEecCCCccchhHHHHhC---CCceEEEeCCCEeEeeCchhHHHHHHHH
Confidence 67899999999999999988653 478888888775333221111111 111222111 122333333322
Q ss_pred HHHH--HhCCCCEEEEcCCCCCcchHHHHHHH---HHhhhhcCCcEEEEEEcCCcchhHHHHHHHHhcc-CCcCEEEeec
Q 019214 176 VETF--KKENCDLIIVDTSGRHKQEAALFEEM---RQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQS-VSVGAVIVTK 249 (344)
Q Consensus 176 l~~~--~~~~~d~vlIDT~G~~~~~~~~~~~l---~~~~~~~~~d~illvvda~~~~~~~~~~~~~~~~-~~~~~lVinK 249 (344)
+..+ ....+|+|+|||||...+.. ..+.+ .........|.+++++|+.......+....+..+ ...+.+|+||
T Consensus 77 ~~~~~~~~~~~d~I~IEt~G~~~p~~-~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~ad~ivlnk 155 (158)
T cd03112 77 LERLDAGKIAFDRIVIETTGLADPGP-VAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFADRILLNK 155 (158)
T ss_pred HHHHHhccCCCCEEEEECCCcCCHHH-HHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHCCEEEEec
Confidence 3332 23479999999999986543 33222 1222334578899999987543322211222221 1236789999
Q ss_pred CCC
Q 019214 250 MDG 252 (344)
Q Consensus 250 ~D~ 252 (344)
+|+
T Consensus 156 ~dl 158 (158)
T cd03112 156 TDL 158 (158)
T ss_pred ccC
Confidence 995
No 152
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=99.16 E-value=1.2e-09 Score=104.68 Aligned_cols=44 Identities=27% Similarity=0.151 Sum_probs=38.3
Q ss_pred CCCeEEEEE-cCCCCCHHHHHHHHHHHHHHcCCccEEeec-CcCcc
Q 019214 99 GKPSVIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCA-DTFRA 142 (344)
Q Consensus 99 ~~~~ii~iv-G~~GvGKTTl~~~La~~l~~~g~~v~iv~~-D~~~~ 142 (344)
.+.++|+|+ .+.||||||++.+||..|+..|++|++||+ ||+..
T Consensus 104 ~~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlID~~DpQ~n 149 (388)
T PRK13705 104 VFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGT 149 (388)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEEcCCCCCCc
Confidence 356788888 455999999999999999999999999996 99764
No 153
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=99.16 E-value=1.6e-10 Score=101.80 Aligned_cols=113 Identities=20% Similarity=0.253 Sum_probs=58.8
Q ss_pred EEEE-EcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhH---HHHHhhcccCCcce----eccC-------CCCC
Q 019214 103 VIMF-VGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAF---DQLKQNATKAKIPF----YGSY-------TESD 167 (344)
Q Consensus 103 ii~i-vG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~---~~l~~~~~~~~v~~----~~~~-------~~~~ 167 (344)
+|++ -|+.||||||++.+||.+|++.|++|+++|.|.+.+... +.-..+....++++ +... ...+
T Consensus 2 iIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~lD~Di~q~S~~r~l~nr~~~~~~~gi~Lp~p~~~~L~~~~~~v~~~~ 81 (261)
T PF09140_consen 2 IIVVGSGKGGVGKSTVAVNLAVALARMGKKVGLLDLDIRQPSLPRYLENRAAWAQRDGIELPVPSHFFLPPDQASVWEGE 81 (261)
T ss_dssp EEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEEE--TTT-HHHHHHHHHHHHHHHHT------EEE-SSSHHHHTTS-H
T ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCHHHHHhccchhHHhcCcccCCccceeecccccccccCc
Confidence 3444 488899999999999999999999999999998665432 11112222222221 1100 1111
Q ss_pred HH--HHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCC
Q 019214 168 PV--RIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSS 224 (344)
Q Consensus 168 ~~--~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~ 224 (344)
+. ..+.+.+..+. .++||++|||||.... +. . .+...+|.++-.++.+
T Consensus 82 ~~~~~~L~q~l~~l~-~~~DfLVID~PGtd~~---ls-r----~Ahs~ADtLiTPlNdS 131 (261)
T PF09140_consen 82 NVEDKRLEQALADLE-GDLDFLVIDTPGTDDR---LS-R----VAHSMADTLITPLNDS 131 (261)
T ss_dssp HHHHHHHHHHHHHHH-HH-SEEEEEE-SSS-H---HH-H----HHHHT-SEEEEEEESS
T ss_pred chhHHHHHHHHHHHh-cCCCEEEEeCCCCCcH---HH-H----HHHHhCCEEEccCchh
Confidence 11 13444555554 5899999999997542 11 1 1223467777666554
No 154
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.15 E-value=3.8e-10 Score=96.01 Aligned_cols=148 Identities=20% Similarity=0.155 Sum_probs=82.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
..++++|++||||||+++++. +..+.-+.. ..+...... ..
T Consensus 15 ~kv~ivG~~~~GKTsL~~~l~------~~~~~~~~~----------------t~g~~~~~~-----------------~~ 55 (173)
T cd04154 15 MRILILGLDNAGKTTILKKLL------GEDIDTISP----------------TLGFQIKTL-----------------EY 55 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHc------cCCCCCcCC----------------ccccceEEE-----------------EE
Confidence 568899999999999999998 542211110 001110000 00
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH---HHHHH-h---ccCCcCEEEeecCCCCC
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAF-K---QSVSVGAVIVTKMDGHA 254 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~---~~~~~-~---~~~~~~~lVinK~D~~~ 254 (344)
.++.+.++||||..... .. ... ....+|.+++|+|++....... ....+ . ....+..+|.||+|...
T Consensus 56 ~~~~l~l~D~~G~~~~~-~~---~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 129 (173)
T cd04154 56 EGYKLNIWDVGGQKTLR-PY---WRN--YFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPG 129 (173)
T ss_pred CCEEEEEEECCCCHHHH-HH---HHH--HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECccccc
Confidence 14667899999975321 11 111 1346899999999986522211 11211 1 12245578899999864
Q ss_pred Ch--hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHH
Q 019214 255 KG--GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIH 308 (344)
Q Consensus 255 ~~--~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~ 308 (344)
.. ......+.. .... ....+.+.+|+++|+| ++++++++.
T Consensus 130 ~~~~~~~~~~~~~-----------~~~~--~~~~~~~~~Sa~~g~g-i~~l~~~l~ 171 (173)
T cd04154 130 ALSEEEIREALEL-----------DKIS--SHHWRIQPCSAVTGEG-LLQGIDWLV 171 (173)
T ss_pred CCCHHHHHHHhCc-----------cccC--CCceEEEeccCCCCcC-HHHHHHHHh
Confidence 32 111111110 0000 0122456789999999 999988874
No 155
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=99.15 E-value=3.5e-09 Score=99.39 Aligned_cols=161 Identities=17% Similarity=0.212 Sum_probs=89.3
Q ss_pred CCeEEEEEc-CCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhH-------------HHHHh-------------hc
Q 019214 100 KPSVIMFVG-LQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAF-------------DQLKQ-------------NA 152 (344)
Q Consensus 100 ~~~ii~ivG-~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~-------------~~l~~-------------~~ 152 (344)
..++|+|+| ++||||||++.+||..+++.|++|++||.|++..+.. ..+.. ..
T Consensus 92 ~~~vIav~~~KGGvGkTT~a~nLA~~la~~g~~VlLvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 171 (322)
T TIGR03815 92 RGVVVAVIGGRGGAGASTLAAALALAAARHGLRTLLVDADPWGGGLDLLLGAEDVPGLRWPDLSQARGRLPAGALRDALP 171 (322)
T ss_pred CceEEEEEcCCCCCcHHHHHHHHHHHHHhcCCCEEEEecCCCCCCeeeeecCCCCCCcCHHHHhhcCCCcCHHHHHHhCC
Confidence 457899986 5599999999999999999999999999999765321 01100 00
Q ss_pred ccCCcceeccCCCC---CHHHHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc--h
Q 019214 153 TKAKIPFYGSYTES---DPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--Q 227 (344)
Q Consensus 153 ~~~~v~~~~~~~~~---~~~~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~--~ 227 (344)
...++.+....... -....+...+..+ ...||++|||||+..... . ... ...+|.+++|++++.. .
T Consensus 172 ~~~~l~vl~~~~~~~~~~~~~~l~~~l~~l-~~~~D~VIID~p~~~~~~--~----~~~--L~~AD~vliV~~~~~~sl~ 242 (322)
T TIGR03815 172 RRGGLSVLSWGRAVGAALPPAAVRAVLDAA-RRGGDLVVVDLPRRLTPA--A----ETA--LESADLVLVVVPADVRAVA 242 (322)
T ss_pred CcCCeEEEecCCCCcCCCCHHHHHHHHHHH-HhcCCEEEEeCCCCCCHH--H----HHH--HHHCCEEEEEcCCcHHHHH
Confidence 01222222211100 1122334445444 347999999999876422 1 111 2347999999988643 1
Q ss_pred hHHHHHHHHhccCCcCEEEeecCCCCCChhhHHHHHHHhCCCeE
Q 019214 228 AAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVI 271 (344)
Q Consensus 228 ~~~~~~~~~~~~~~~~~lVinK~D~~~~~~~~~~~~~~~~~pv~ 271 (344)
......+.+........+|+|+....... ........+.|+.
T Consensus 243 ~a~r~l~~l~~~~~~~~lVv~~~~~~~~~--~~~i~~~lg~~v~ 284 (322)
T TIGR03815 243 AAARVCPELGRRNPDLRLVVRGPAPAGLD--PEEIAESLGLPLL 284 (322)
T ss_pred HHHHHHHHHhhhCCCeEEEEeCCCCCCCC--HHHHHHHhCCCce
Confidence 22223333332212235667764432221 2233334565554
No 156
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.15 E-value=8.9e-11 Score=101.85 Aligned_cols=114 Identities=16% Similarity=0.168 Sum_probs=63.6
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchh--HHHHHHHHhccCCcCEEEeecCCCCCChh--h
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAFKQSVSVGAVIVTKMDGHAKGG--G 258 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~--~~~~~~~~~~~~~~~~lVinK~D~~~~~~--~ 258 (344)
++.+.++||||.. .+.... ......+|.+++|+|++.+.. ..+..........+..+|+||+|...... .
T Consensus 67 ~~~~~i~DtpG~~----~~~~~~--~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~ 140 (192)
T cd01889 67 NLQITLVDCPGHA----SLIRTI--IGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERER 140 (192)
T ss_pred CceEEEEECCCcH----HHHHHH--HHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHH
Confidence 6788999999974 222222 122235789999999987522 11111111111234578899999864321 1
Q ss_pred HHHHHHH-hCCCeEEEecCCCCCcC-cCCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 259 ALSAVAA-TKSPVIFIGTGEHMDEF-EVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 259 ~~~~~~~-~~~pv~~~~~g~~~~~l-~~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
..+.+.. .+ +.+... ....+.+.+|++.|+| +++|.+.+....+
T Consensus 141 ~~~~~~~~l~---------~~~~~~~~~~~~vi~iSa~~g~g-i~~L~~~l~~~~~ 186 (192)
T cd01889 141 KIEKMKKKLQ---------KTLEKTRFKNSPIIPVSAKPGGG-EAELGKDLNNLIV 186 (192)
T ss_pred HHHHHHHHHH---------HHHHhcCcCCCCEEEEeccCCCC-HHHHHHHHHhccc
Confidence 1221110 00 000000 0123457789999999 9999999988654
No 157
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=99.14 E-value=6.9e-10 Score=86.38 Aligned_cols=73 Identities=29% Similarity=0.292 Sum_probs=57.0
Q ss_pred EEEEEc-CCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 103 VIMFVG-LQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 103 ii~ivG-~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
+|+|.| .+|+||||++.+|+..++++|.++.++++|++
T Consensus 1 ~i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~----------------------------------------- 39 (104)
T cd02042 1 VIAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ----------------------------------------- 39 (104)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC-----------------------------------------
Confidence 366776 55999999999999999999999999999865
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG 226 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~ 226 (344)
||+++||+||....... .. ...+|.++++++++..
T Consensus 40 --~d~viiD~p~~~~~~~~------~~--l~~ad~viv~~~~~~~ 74 (104)
T cd02042 40 --YDYIIIDTPPSLGLLTR------NA--LAAADLVLIPVQPSPL 74 (104)
T ss_pred --CCEEEEeCcCCCCHHHH------HH--HHHCCEEEEeccCCHH
Confidence 67899999987643211 11 2237999999998753
No 158
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.13 E-value=3.2e-10 Score=96.17 Aligned_cols=151 Identities=18% Similarity=0.131 Sum_probs=82.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...++++|++||||||+++.+. |........ . .+.......
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~------~~~~~~~~~-----------t-----~g~~~~~i~----------------- 54 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLA------SEDISHITP-----------T-----QGFNIKTVQ----------------- 54 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHh------cCCCcccCC-----------C-----CCcceEEEE-----------------
Confidence 3569999999999999999998 543321111 0 111110000
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHH---HHHHHHh----ccCCcCEEEeecCCCC
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFK----QSVSVGAVIVTKMDGH 253 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~---~~~~~~~----~~~~~~~lVinK~D~~ 253 (344)
..+.++.++||||...... .... ....+|.+++|+|++...... .....+. ....+..+++||+|..
T Consensus 55 ~~~~~~~~~D~~G~~~~~~----~~~~--~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 128 (173)
T cd04155 55 SDGFKLNVWDIGGQRAIRP----YWRN--YFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLA 128 (173)
T ss_pred ECCEEEEEEECCCCHHHHH----HHHH--HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCc
Confidence 1256778999999743211 1111 123578999999987532211 1111111 1123456789999986
Q ss_pred CChhhHHHHHHHhCCCeEEEecCCCCCcCc-CCChHHHHHHHhCCCChhHHHHHHHh
Q 019214 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFE-VFDVKPFVSRLLGMGDWSGFMDKIHE 309 (344)
Q Consensus 254 ~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~-~~~~~~~is~~~g~g~i~~l~~~i~~ 309 (344)
.... ........+ +.++. ...+...+|+++|+| +++++++|.+
T Consensus 129 ~~~~-~~~i~~~l~-----------~~~~~~~~~~~~~~Sa~~~~g-i~~~~~~l~~ 172 (173)
T cd04155 129 TAAP-AEEIAEALN-----------LHDLRDRTWHIQACSAKTGEG-LQEGMNWVCK 172 (173)
T ss_pred cCCC-HHHHHHHcC-----------CcccCCCeEEEEEeECCCCCC-HHHHHHHHhc
Confidence 4321 112222111 11111 111234679999999 9999998854
No 159
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.12 E-value=4.6e-10 Score=93.00 Aligned_cols=149 Identities=18% Similarity=0.105 Sum_probs=80.6
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHhCC
Q 019214 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKEN 183 (344)
Q Consensus 104 i~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~ 183 (344)
|+++|++||||||+++.|. |.+.. .+. ....+..+.... ..+
T Consensus 2 i~i~G~~~~GKssl~~~l~------~~~~~---~~~------------~~t~~~~~~~~~-----------------~~~ 43 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIA------GGQFS---EDT------------IPTVGFNMRKVT-----------------KGN 43 (159)
T ss_pred EEEEcCCCCCHHHHHHHHc------cCCCC---cCc------------cCCCCcceEEEE-----------------ECC
Confidence 7899999999999999998 54321 000 000111111000 013
Q ss_pred CCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHH---HHHHHHhc----cCCcCEEEeecCCCCCCh
Q 019214 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQ----SVSVGAVIVTKMDGHAKG 256 (344)
Q Consensus 184 ~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~---~~~~~~~~----~~~~~~lVinK~D~~~~~ 256 (344)
..+.++||||...... .... ....+|.+++|+|++...... .....+.. ...+..+|+||+|.....
T Consensus 44 ~~~~~~D~~g~~~~~~----~~~~--~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~ 117 (159)
T cd04159 44 VTLKVWDLGGQPRFRS----MWER--YCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL 117 (159)
T ss_pred EEEEEEECCCCHhHHH----HHHH--HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCc
Confidence 5578999999743221 1111 134578999999997642221 11222111 123457889999986442
Q ss_pred hhHHHHHHHhCCCeEEEecCCCCCcC-cCCChHHHHHHHhCCCChhHHHHHHHh
Q 019214 257 GGALSAVAATKSPVIFIGTGEHMDEF-EVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (344)
Q Consensus 257 ~~~~~~~~~~~~pv~~~~~g~~~~~l-~~~~~~~~is~~~g~g~i~~l~~~i~~ 309 (344)
. ........+. ... ....+.+.+|+.+|.| +++++++|.+
T Consensus 118 ~-~~~~~~~~~~-----------~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~ 158 (159)
T cd04159 118 S-VDELIEQMNL-----------KSITDREVSCYSISCKEKTN-IDIVLDWLIK 158 (159)
T ss_pred C-HHHHHHHhCc-----------ccccCCceEEEEEEeccCCC-hHHHHHHHhh
Confidence 1 1111221110 000 0112345679999999 9999998864
No 160
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.11 E-value=1.7e-10 Score=103.22 Aligned_cols=87 Identities=21% Similarity=0.317 Sum_probs=50.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHhC
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 182 (344)
.++++|+|||||||+++.|+ |....+.+ .++++....+-.... .
T Consensus 2 ~v~lvG~~~~GKStLl~~Lt------g~~~~v~~------------~~~tT~~~~~g~~~~------------------~ 45 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLT------NTKSEVAA------------YEFTTLTCVPGVLEY------------------K 45 (233)
T ss_pred EEEEECCCCCCHHHHHHHHH------CCCccccC------------CCCccccceEEEEEE------------------C
Confidence 47899999999999999999 65433211 112221111100000 1
Q ss_pred CCCEEEEcCCCCCcchH---HHHHHHHHhhhhcCCcEEEEEEcCCcch
Q 019214 183 NCDLIIVDTSGRHKQEA---ALFEEMRQVSEATNPDLVIFVMDSSIGQ 227 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~---~~~~~l~~~~~~~~~d~illvvda~~~~ 227 (344)
+..+.++||||...... ...... +.....+|.+++|+|++...
T Consensus 46 ~~~i~l~DtpG~~~~~~~~~~~~~~~--l~~~~~ad~il~V~D~t~~~ 91 (233)
T cd01896 46 GAKIQLLDLPGIIEGAADGKGRGRQV--IAVARTADLILMVLDATKPE 91 (233)
T ss_pred CeEEEEEECCCcccccccchhHHHHH--HHhhccCCEEEEEecCCcch
Confidence 56678999999753321 111111 22344689999999987543
No 161
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.11 E-value=7.7e-10 Score=101.06 Aligned_cols=127 Identities=20% Similarity=0.172 Sum_probs=66.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHhCC
Q 019214 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKEN 183 (344)
Q Consensus 104 i~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~ 183 (344)
|+++|.+|+|||||+++|....... .++.-++..... .+. .+.....++.+.... ..+...+
T Consensus 2 v~ivGh~~~GKTtL~~~Ll~~~g~~-~~~g~v~~~~~~---~D~-~~~E~~rgiti~~~~-------------~~~~~~~ 63 (270)
T cd01886 2 IGIIAHIDAGKTTTTERILYYTGRI-HKIGEVHGGGAT---MDF-MEQERERGITIQSAA-------------TTCFWKD 63 (270)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCC-cccccccCCccc---cCC-CccccCCCcCeeccE-------------EEEEECC
Confidence 7899999999999999998543211 112112210000 000 000011111111000 0111236
Q ss_pred CCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH--HHHHHHHhccCCcCEEEeecCCCCC
Q 019214 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFKQSVSVGAVIVTKMDGHA 254 (344)
Q Consensus 184 ~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~--~~~~~~~~~~~~~~~lVinK~D~~~ 254 (344)
+.+.+|||||..... .++. .....+|.+++|+|+..+... ............+..+++||+|...
T Consensus 64 ~~i~liDTPG~~df~----~~~~--~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~ 130 (270)
T cd01886 64 HRINIIDTPGHVDFT----IEVE--RSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTG 130 (270)
T ss_pred EEEEEEECCCcHHHH----HHHH--HHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 788999999975322 2221 223357899999999876322 2233333333334578899999864
No 162
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=99.11 E-value=1.5e-09 Score=113.17 Aligned_cols=147 Identities=17% Similarity=0.130 Sum_probs=89.7
Q ss_pred CCeEEEEEcCC-CCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHH---------------------hhcccCCc
Q 019214 100 KPSVIMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLK---------------------QNATKAKI 157 (344)
Q Consensus 100 ~~~ii~ivG~~-GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~---------------------~~~~~~~v 157 (344)
++++|+|++.. |+||||++.+||..++..|++|++||+|++++.....+. ......++
T Consensus 545 ~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~l 624 (754)
T TIGR01005 545 EPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGRKAALSQILVAREVSGLLDLLAGLRSLLLDLTASGAASL 624 (754)
T ss_pred CceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHhCCcccCChHHHHcCCccHHHHhccCCCCCe
Confidence 45788888554 999999999999999999999999999998764322111 00112334
Q ss_pred ceeccCC-CCCHHHH-----HHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc--hhH
Q 019214 158 PFYGSYT-ESDPVRI-----AVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QAA 229 (344)
Q Consensus 158 ~~~~~~~-~~~~~~~-----~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~--~~~ 229 (344)
.+..... ..++... ..+.+..++ ..||+||||||+........ .+ ...+|.+++|+.+... ...
T Consensus 625 ~~l~~g~~~~~~~~ll~~~~~~~~l~~l~-~~yD~IiID~pp~~~~~d~~-----~l--~~~~D~vl~v~~~~~~~~~~~ 696 (754)
T TIGR01005 625 PMLDSGLFPHGITELLASPAMFSLVIHAR-LYSDCVVVDVGTADPVRDMR-----AA--ARLAIIMLLVTAYDRVVVECG 696 (754)
T ss_pred eEecCCCCCCCHHHHhccHHHHHHHHHHH-hhCCEEEEcCCCcchhHHHH-----Hh--hhhCCeEEEEEEeCceeHHHH
Confidence 4333221 1222222 233344443 58999999999986532211 11 1247888888876532 222
Q ss_pred HHHHHHHhc-cCCcCEEEeecCCCCC
Q 019214 230 FDQAQAFKQ-SVSVGAVIVTKMDGHA 254 (344)
Q Consensus 230 ~~~~~~~~~-~~~~~~lVinK~D~~~ 254 (344)
.+....+.. ..++.|+|+|++|...
T Consensus 697 ~~~~~~l~~~~~~~~GvvlN~~~~~~ 722 (754)
T TIGR01005 697 RADAQGISRLNGEVTGVFLNMLDPND 722 (754)
T ss_pred HHHHHHHHhcCCceEEEEecCCChhh
Confidence 233333322 2345799999998654
No 163
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.11 E-value=4.5e-10 Score=96.97 Aligned_cols=162 Identities=14% Similarity=0.085 Sum_probs=83.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
..++++|++||||||+++.+. +.+..... |. .......+. .
T Consensus 20 ~ki~ilG~~~~GKStLi~~l~------~~~~~~~~--~T---------~~~~~~~i~----------------------~ 60 (190)
T cd00879 20 AKILFLGLDNAGKTTLLHMLK------DDRLAQHV--PT---------LHPTSEELT----------------------I 60 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHh------cCCCcccC--Cc---------cCcceEEEE----------------------E
Confidence 567999999999999999998 54321100 00 000000000 0
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchh---HHHHHHHHhc----cCCcCEEEeecCCCCC
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQAQAFKQ----SVSVGAVIVTKMDGHA 254 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~---~~~~~~~~~~----~~~~~~lVinK~D~~~ 254 (344)
.+..+.++||||..... .+ .......+|.+++|+|.+.... .......+.. ...+..+|.||+|...
T Consensus 61 ~~~~~~l~D~~G~~~~~-----~~-~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~ 134 (190)
T cd00879 61 GNIKFKTFDLGGHEQAR-----RL-WKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG 134 (190)
T ss_pred CCEEEEEEECCCCHHHH-----HH-HHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC
Confidence 14667899999964321 11 1112346789999999875421 1112222111 1245578899999853
Q ss_pred ChhhHHHHHHHhCCCeEEEecCCCCCcC-cCCChHHHHHHHhCCCChhHHHHHHHhh
Q 019214 255 KGGGALSAVAATKSPVIFIGTGEHMDEF-EVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (344)
Q Consensus 255 ~~~~~~~~~~~~~~pv~~~~~g~~~~~l-~~~~~~~~is~~~g~g~i~~l~~~i~~~ 310 (344)
.... -......+.+-...+.+....+. ....+.+.+|+++|+| ++++++++.+.
T Consensus 135 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-v~e~~~~l~~~ 189 (190)
T cd00879 135 AVSE-EELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQG-YGEAFRWLSQY 189 (190)
T ss_pred CcCH-HHHHHHhCcccccccccccccccCceeEEEEEeEecCCCC-hHHHHHHHHhh
Confidence 2111 11111112111000000111000 1112346689999999 99999998764
No 164
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.10 E-value=8.4e-10 Score=99.49 Aligned_cols=121 Identities=21% Similarity=0.287 Sum_probs=68.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
.+..|+++|++||||||++|.|. |.++..++. +.+ ++.........
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLl------g~~~~~v~~--~~~---------~T~~~~~~~~~----------------- 75 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIF------GERKAATSA--FQS---------ETLRVREVSGT----------------- 75 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHh------CCCCcccCC--CCC---------ceEEEEEEEEE-----------------
Confidence 34679999999999999999999 877765543 111 11110000110
Q ss_pred HhCCCCEEEEcCCCCCcch------HHHHHHHHHhhhhcCCcEEEEEEcCCcc---hhHHHHHHHHhcc-----CCcCEE
Q 019214 180 KKENCDLIIVDTSGRHKQE------AALFEEMRQVSEATNPDLVIFVMDSSIG---QAAFDQAQAFKQS-----VSVGAV 245 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~------~~~~~~l~~~~~~~~~d~illvvda~~~---~~~~~~~~~~~~~-----~~~~~l 245 (344)
..+..+.+|||||+.... ......+.........|.+++|...... ......++.+... .....+
T Consensus 76 -~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~iv 154 (249)
T cd01853 76 -VDGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIV 154 (249)
T ss_pred -ECCeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEE
Confidence 126678999999987652 1111222222222357888888654422 2222333333221 123578
Q ss_pred EeecCCCCCC
Q 019214 246 IVTKMDGHAK 255 (344)
Q Consensus 246 VinK~D~~~~ 255 (344)
|+||+|...+
T Consensus 155 V~T~~d~~~p 164 (249)
T cd01853 155 VLTHAASSPP 164 (249)
T ss_pred EEeCCccCCC
Confidence 9999998644
No 165
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.10 E-value=6.8e-10 Score=94.72 Aligned_cols=151 Identities=19% Similarity=0.142 Sum_probs=82.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
..|+++|++||||||+++++.. |..+ ...|. .+..+.. . ..
T Consensus 16 ~kv~~~G~~~~GKTsl~~~l~~-----~~~~---~~~~t--------------~~~~~~~-~----------------~~ 56 (174)
T cd04153 16 YKVIIVGLDNAGKTTILYQFLL-----GEVV---HTSPT--------------IGSNVEE-I----------------VY 56 (174)
T ss_pred cEEEEECCCCCCHHHHHHHHcc-----CCCC---CcCCc--------------cccceEE-E----------------EE
Confidence 4689999999999999999972 2211 11110 0000000 0 01
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHH---HHHHHHh-c---cCCcCEEEeecCCCCC
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFK-Q---SVSVGAVIVTKMDGHA 254 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~---~~~~~~~-~---~~~~~~lVinK~D~~~ 254 (344)
++..+.++||||....... .. .....+|.+++|+|++...... .....+. . ...+..+|+||+|...
T Consensus 57 ~~~~~~l~D~~G~~~~~~~----~~--~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 57 KNIRFLMWDIGGQESLRSS----WN--TYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG 130 (174)
T ss_pred CCeEEEEEECCCCHHHHHH----HH--HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC
Confidence 1567889999997532111 11 1123689999999998653221 1122221 1 1245588899999864
Q ss_pred ChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHh
Q 019214 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (344)
Q Consensus 255 ~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~ 309 (344)
... ..+.....+. +..... ..+.+.+|+++|+| +++++++|.+
T Consensus 131 ~~~-~~~i~~~l~~--------~~~~~~--~~~~~~~SA~~g~g-i~e~~~~l~~ 173 (174)
T cd04153 131 AMT-PAEISESLGL--------TSIRDH--TWHIQGCCALTGEG-LPEGLDWIAS 173 (174)
T ss_pred CCC-HHHHHHHhCc--------ccccCC--ceEEEecccCCCCC-HHHHHHHHhc
Confidence 321 1111111110 000110 11346789999999 9999988754
No 166
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.10 E-value=5.9e-10 Score=93.32 Aligned_cols=108 Identities=19% Similarity=0.084 Sum_probs=59.6
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHh------ccCCcCEEEeecCCCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFK------QSVSVGAVIVTKMDGH 253 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~------~~~~~~~lVinK~D~~ 253 (344)
++.+.++||||...... . .. .....+|.+++|+|++..... ......+. ....+..+|+||+|..
T Consensus 44 ~~~~~l~Dt~G~~~~~~-~---~~--~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~ 117 (162)
T cd04157 44 NLSFTAFDMSGQGKYRG-L---WE--HYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLP 117 (162)
T ss_pred CEEEEEEECCCCHhhHH-H---HH--HHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCcccc
Confidence 56678999999753221 1 11 113468999999999865321 11122211 1123558899999986
Q ss_pred CChhhHHHHHHHhCCCeEEEecCCCCCcCc-CCChHHHHHHHhCCCChhHHHHHHHh
Q 019214 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFE-VFDVKPFVSRLLGMGDWSGFMDKIHE 309 (344)
Q Consensus 254 ~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~-~~~~~~~is~~~g~g~i~~l~~~i~~ 309 (344)
..... .......+ +..+. ...+.+.+|+++|+| +++++++|.+
T Consensus 118 ~~~~~-~~~~~~l~-----------~~~~~~~~~~~~~~Sa~~g~g-v~~~~~~l~~ 161 (162)
T cd04157 118 DALTA-VKITQLLG-----------LENIKDKPWHIFASNALTGEG-LDEGVQWLQA 161 (162)
T ss_pred CCCCH-HHHHHHhC-----------CccccCceEEEEEeeCCCCCc-hHHHHHHHhc
Confidence 43211 11111111 11110 011245689999999 9999998753
No 167
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.10 E-value=6.9e-10 Score=92.88 Aligned_cols=157 Identities=22% Similarity=0.232 Sum_probs=81.6
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCcc-EEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHhC
Q 019214 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKP-ALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (344)
Q Consensus 104 i~ivG~~GvGKTTl~~~La~~l~~~g~~v-~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 182 (344)
|+++|++|+||||+++.|+ +... .-.+. ....+. ....+. .
T Consensus 2 i~l~G~~g~GKTtL~~~l~------~~~~~~~~~~-----------~~~~t~-~~~~~~--------------------~ 43 (170)
T cd01876 2 IAFAGRSNVGKSSLINALT------NRKKLARTSK-----------TPGKTQ-LINFFN--------------------V 43 (170)
T ss_pred EEEEcCCCCCHHHHHHHHh------cCCceeeecC-----------CCCcce-eEEEEE--------------------c
Confidence 7899999999999999998 3221 11111 000000 000010 0
Q ss_pred CCCEEEEcCCCCCcc------hHHHHHHHHHhhhh-cCCcEEEEEEcCCcc--hhHHHHHHHHhccCCcCEEEeecCCCC
Q 019214 183 NCDLIIVDTSGRHKQ------EAALFEEMRQVSEA-TNPDLVIFVMDSSIG--QAAFDQAQAFKQSVSVGAVIVTKMDGH 253 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~------~~~~~~~l~~~~~~-~~~d~illvvda~~~--~~~~~~~~~~~~~~~~~~lVinK~D~~ 253 (344)
+..+.++||||+... .......+...... ...+.+++++|.... .........+.....+..+|+||+|..
T Consensus 44 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~ 123 (170)
T cd01876 44 NDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKL 123 (170)
T ss_pred cCeEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcC
Confidence 236789999997542 11111111111211 134678889888654 222223333333323457889999985
Q ss_pred CChhh--HHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 254 AKGGG--ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 254 ~~~~~--~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
..... ...... ..+.......+.+++|++.+.| +.++++.|.+.+
T Consensus 124 ~~~~~~~~~~~~~------------~~l~~~~~~~~~~~~Sa~~~~~-~~~l~~~l~~~~ 170 (170)
T cd01876 124 KKSELAKALKEIK------------KELKLFEIDPPIILFSSLKGQG-IDELRALIEKWL 170 (170)
T ss_pred ChHHHHHHHHHHH------------HHHHhccCCCceEEEecCCCCC-HHHHHHHHHHhC
Confidence 43211 111111 0000011223445778889999 999999988753
No 168
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.10 E-value=1.6e-09 Score=98.56 Aligned_cols=43 Identities=28% Similarity=0.236 Sum_probs=37.3
Q ss_pred CeEEEEEcCC-CCCHHHHHHHHHHHHH-HcCCccEEeecCcCcch
Q 019214 101 PSVIMFVGLQ-GSGKTTTCTKYAYYHQ-KKGWKPALVCADTFRAG 143 (344)
Q Consensus 101 ~~ii~ivG~~-GvGKTTl~~~La~~l~-~~g~~v~iv~~D~~~~~ 143 (344)
+++|+|++.. ||||||++.+||.+|+ ..|++|++||.||+...
T Consensus 2 ~~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ~s~ 46 (259)
T COG1192 2 MKIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQGSL 46 (259)
T ss_pred CEEEEEEecCCCccHHHHHHHHHHHHHHhcCCcEEEEeCCCcchh
Confidence 4688888766 9999999999999999 56699999999998543
No 169
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.09 E-value=9.8e-10 Score=93.22 Aligned_cols=150 Identities=19% Similarity=0.135 Sum_probs=82.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHhCC
Q 019214 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKEN 183 (344)
Q Consensus 104 i~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~ 183 (344)
|+++|.+||||||+++++. +... ... .+ + .+..+.. .. ..+
T Consensus 2 vvlvG~~~~GKTsl~~~l~------~~~~--~~~---~~----------T-~~~~~~~-~~----------------~~~ 42 (169)
T cd04158 2 VVTLGLDGAGKTTILFKLK------QDEF--MQP---IP----------T-IGFNVET-VE----------------YKN 42 (169)
T ss_pred EEEECCCCCCHHHHHHHHh------cCCC--CCc---CC----------c-CceeEEE-EE----------------ECC
Confidence 7899999999999999998 4311 010 00 0 1111110 00 125
Q ss_pred CCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHhc----cCCcCEEEeecCCCCCCh
Q 019214 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ----SVSVGAVIVTKMDGHAKG 256 (344)
Q Consensus 184 ~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~~----~~~~~~lVinK~D~~~~~ 256 (344)
+.+.++||||....... . ......+|.+++|+|.+..... ......+.. ...+..+|.||+|+....
T Consensus 43 ~~i~l~Dt~G~~~~~~~----~--~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 116 (169)
T cd04158 43 LKFTIWDVGGKHKLRPL----W--KHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGAL 116 (169)
T ss_pred EEEEEEECCCChhcchH----H--HHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCC
Confidence 67789999997532211 1 1113468999999999764222 122222211 113457889999986432
Q ss_pred h-h-HHHHHHHhCCCeEEEecCCCCCcCcC--CChHHHHHHHhCCCChhHHHHHHHhhCCC
Q 019214 257 G-G-ALSAVAATKSPVIFIGTGEHMDEFEV--FDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (344)
Q Consensus 257 ~-~-~~~~~~~~~~pv~~~~~g~~~~~l~~--~~~~~~is~~~g~g~i~~l~~~i~~~~~~ 313 (344)
. . ....+. ...+.. .-..+.+|+++|.| +++++++|.+.+..
T Consensus 117 ~~~~~~~~~~--------------~~~~~~~~~~~~~~~Sa~~g~g-v~~~f~~l~~~~~~ 162 (169)
T cd04158 117 SVEEMTELLS--------------LHKLCCGRSWYIQGCDARSGMG-LYEGLDWLSRQLVA 162 (169)
T ss_pred CHHHHHHHhC--------------CccccCCCcEEEEeCcCCCCCC-HHHHHHHHHHHHhh
Confidence 1 1 111111 001100 01223469999999 99999999876543
No 170
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.08 E-value=5.9e-10 Score=91.87 Aligned_cols=155 Identities=17% Similarity=0.079 Sum_probs=77.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
..|+++|.+|+||||+++++. +.. .....++ ..+..-.......
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~------~~~-~~~~~~~-----------~~~~~~~~~~~~~------------------ 45 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLL------GNK-FITEYKP-----------GTTRNYVTTVIEE------------------ 45 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHh------CCC-CcCcCCC-----------CceeeeeEEEEEE------------------
Confidence 468999999999999999998 544 2222211 1111111100000
Q ss_pred CC--CCEEEEcCCCCCcchHHHHHHHHHhh-hhcCCcEEEEEEcCCcch-hHHHHHHHHhccCCcCEEEeecCCCCCChh
Q 019214 182 EN--CDLIIVDTSGRHKQEAALFEEMRQVS-EATNPDLVIFVMDSSIGQ-AAFDQAQAFKQSVSVGAVIVTKMDGHAKGG 257 (344)
Q Consensus 182 ~~--~d~vlIDT~G~~~~~~~~~~~l~~~~-~~~~~d~illvvda~~~~-~~~~~~~~~~~~~~~~~lVinK~D~~~~~~ 257 (344)
.+ +.+.++||||................ .....|.+++|.++.... ........+.....+..+++||+|.....
T Consensus 46 ~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~- 124 (161)
T TIGR00231 46 DGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK- 124 (161)
T ss_pred CCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-
Confidence 13 67889999996433211111111111 112345555555554332 22222222222123457889999996542
Q ss_pred hHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHH
Q 019214 258 GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIH 308 (344)
Q Consensus 258 ~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~ 308 (344)
...... ..... ....+.+.+|+..|.| ++.+.+.|.
T Consensus 125 -~~~~~~------------~~~~~-~~~~~~~~~sa~~~~g-v~~~~~~l~ 160 (161)
T TIGR00231 125 -LKTHVA------------FLFAK-LNGEPIIPLSAETGKN-IDSAFKIVE 160 (161)
T ss_pred -hhHHHH------------HHHhh-ccCCceEEeecCCCCC-HHHHHHHhh
Confidence 111111 00011 1122356678889999 998888764
No 171
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.08 E-value=2.4e-10 Score=96.30 Aligned_cols=103 Identities=15% Similarity=-0.014 Sum_probs=58.6
Q ss_pred CCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHh---ccCCcCEEEeecCCCCCChh
Q 019214 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFK---QSVSVGAVIVTKMDGHAKGG 257 (344)
Q Consensus 184 ~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~---~~~~~~~lVinK~D~~~~~~ 257 (344)
+.+.++||||.... ..+. ......+|.+++|+|++..... ......+. ....+..+|.||+|......
T Consensus 52 ~~l~i~D~~G~~~~-----~~~~-~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 125 (165)
T cd01864 52 VKLQIWDTAGQERF-----RTIT-QSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQRE 125 (165)
T ss_pred EEEEEEECCChHHH-----HHHH-HHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccc
Confidence 57789999996321 1111 1113357999999999875322 12222222 12234578899999864321
Q ss_pred ----hHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhh
Q 019214 258 ----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (344)
Q Consensus 258 ----~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~ 310 (344)
......... .....+.+|+++|+| ++++++.+.+.
T Consensus 126 ~~~~~~~~~~~~~-----------------~~~~~~e~Sa~~~~~-v~~~~~~l~~~ 164 (165)
T cd01864 126 VLFEEACTLAEKN-----------------GMLAVLETSAKESQN-VEEAFLLMATE 164 (165)
T ss_pred cCHHHHHHHHHHc-----------------CCcEEEEEECCCCCC-HHHHHHHHHHh
Confidence 111211111 112235578889999 99999988754
No 172
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.08 E-value=5.5e-09 Score=95.54 Aligned_cols=86 Identities=19% Similarity=0.200 Sum_probs=50.0
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH--HHHHHHHhccCCcCEEEeecCCCCCC-hhhH
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFKQSVSVGAVIVTKMDGHAK-GGGA 259 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~--~~~~~~~~~~~~~~~lVinK~D~~~~-~~~~ 259 (344)
++++.+|||||..... ..+.. ....+|.+++|+|++.+... ............+..+++||+|.... ....
T Consensus 63 ~~~i~liDtPG~~~f~----~~~~~--~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~~~~~~ 136 (268)
T cd04170 63 GHKINLIDTPGYADFV----GETRA--ALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERADFDKT 136 (268)
T ss_pred CEEEEEEECcCHHHHH----HHHHH--HHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCCCHHHH
Confidence 6788999999975321 12211 22357999999999876322 22222222222345789999998653 2333
Q ss_pred HHHHH-HhCCCeEEEe
Q 019214 260 LSAVA-ATKSPVIFIG 274 (344)
Q Consensus 260 ~~~~~-~~~~pv~~~~ 274 (344)
++.+. ..+.++..+.
T Consensus 137 ~~~l~~~~~~~~~~~~ 152 (268)
T cd04170 137 LAALQEAFGRPVVPLQ 152 (268)
T ss_pred HHHHHHHhCCCeEEEE
Confidence 44443 3566655443
No 173
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.08 E-value=9.1e-10 Score=93.45 Aligned_cols=149 Identities=16% Similarity=0.069 Sum_probs=81.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
..|+++|.+||||||+++++. ..... .. .+ + .+..+... . .
T Consensus 10 ~kv~i~G~~~~GKTsli~~l~------~~~~~--~~---~~---------t--~g~~~~~~-~----------------~ 50 (168)
T cd04149 10 MRILMLGLDAAGKTTILYKLK------LGQSV--TT---IP---------T--VGFNVETV-T----------------Y 50 (168)
T ss_pred cEEEEECcCCCCHHHHHHHHc------cCCCc--cc---cC---------C--cccceEEE-E----------------E
Confidence 468999999999999999987 22110 10 00 0 01111000 0 0
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHH---HHHHHHhc----cCCcCEEEeecCCCCC
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQ----SVSVGAVIVTKMDGHA 254 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~---~~~~~~~~----~~~~~~lVinK~D~~~ 254 (344)
.++.+.+.||||..... .+. -.....+|.+++|+|++...... .....+.. ...+..+|.||+|+..
T Consensus 51 ~~~~~~l~Dt~G~~~~~-----~~~-~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 124 (168)
T cd04149 51 KNVKFNVWDVGGQDKIR-----PLW-RHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD 124 (168)
T ss_pred CCEEEEEEECCCCHHHH-----HHH-HHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc
Confidence 15678899999985321 111 11234689999999998642221 22222211 1235688899999864
Q ss_pred Chh-hHHHHHHHhCCCeEEEecCCCCCcCcC-CChHHHHHHHhCCCChhHHHHHHHh
Q 019214 255 KGG-GALSAVAATKSPVIFIGTGEHMDEFEV-FDVKPFVSRLLGMGDWSGFMDKIHE 309 (344)
Q Consensus 255 ~~~-~~~~~~~~~~~pv~~~~~g~~~~~l~~-~~~~~~is~~~g~g~i~~l~~~i~~ 309 (344)
... ....... + ...+.. ..+.+.+|+++|+| +++++++|.+
T Consensus 125 ~~~~~~i~~~~--~-----------~~~~~~~~~~~~~~SAk~g~g-v~~~~~~l~~ 167 (168)
T cd04149 125 AMKPHEIQEKL--G-----------LTRIRDRNWYVQPSCATSGDG-LYEGLTWLSS 167 (168)
T ss_pred CCCHHHHHHHc--C-----------CCccCCCcEEEEEeeCCCCCC-hHHHHHHHhc
Confidence 311 1111110 0 111111 11345689999999 9999988754
No 174
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.08 E-value=5.8e-09 Score=93.54 Aligned_cols=137 Identities=15% Similarity=0.116 Sum_probs=71.5
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH--HHHHHHHhccCCcCEEEeecCCCCC-ChhhH
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFKQSVSVGAVIVTKMDGHA-KGGGA 259 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~--~~~~~~~~~~~~~~~lVinK~D~~~-~~~~~ 259 (344)
++.+.++||||....... ... ....+|.+++|+|++.+... ............+..+++||+|... .....
T Consensus 63 ~~~i~liDTPG~~~f~~~----~~~--~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~~~~~ 136 (237)
T cd04168 63 DTKVNLIDTPGHMDFIAE----VER--SLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADLEKV 136 (237)
T ss_pred CEEEEEEeCCCccchHHH----HHH--HHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCCHHHH
Confidence 678899999998643222 211 22357999999999876321 2222222222334578899999864 33444
Q ss_pred HHHH-HHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCCCchHHHHHHHhcC-CcChHHHHHhH
Q 019214 260 LSAV-AATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELLQKLSEG-NFTLRIMFSLC 337 (344)
Q Consensus 260 ~~~~-~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 337 (344)
++.+ ..++.++..+...-.+..+. . ..+- .+.|+|.+.+. -.++.+++.++ +++-+++.+.
T Consensus 137 ~~~i~~~~~~~~~~~~~p~~~~~~~---------~-~~~~-~~~l~e~vae~-----dd~l~e~yl~~~~~~~~el~~~- 199 (237)
T cd04168 137 YQEIKEKLSSDIVPMQKVGLAPNIC---------E-TNEI-DDEFWETLAEG-----DDELLEKYLEGGPIEELELDNE- 199 (237)
T ss_pred HHHHHHHHCCCeEEEECCcEeeeee---------e-eeec-cHHHHHHHhcC-----CHHHHHHHhCCCCCCHHHHHHH-
Confidence 4333 44555544443211011000 0 0011 24444444443 13444444444 7777777777
Q ss_pred Hhhcc
Q 019214 338 FQDSV 342 (344)
Q Consensus 338 ~~~~~ 342 (344)
++..+
T Consensus 200 l~~~~ 204 (237)
T cd04168 200 LSARI 204 (237)
T ss_pred HHHHH
Confidence 66543
No 175
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.08 E-value=6.7e-10 Score=111.34 Aligned_cols=116 Identities=15% Similarity=0.200 Sum_probs=63.6
Q ss_pred CEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc--hhHHHHHHHHhccCCcCEEEeecCCCCCChhh----
Q 019214 185 DLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGG---- 258 (344)
Q Consensus 185 d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~--~~~~~~~~~~~~~~~~~~lVinK~D~~~~~~~---- 258 (344)
.+.|+||||..... .++. .....+|.+++|+|++.+ ....+....+.....+..+++||+|.......
T Consensus 70 ~l~~iDTpG~e~f~-----~l~~-~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~ 143 (590)
T TIGR00491 70 GLLFIDTPGHEAFT-----NLRK-RGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGR 143 (590)
T ss_pred cEEEEECCCcHhHH-----HHHH-HHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCc
Confidence 47899999974321 1211 123468999999999865 22233333333223345888999998632100
Q ss_pred -HHH----------------------HHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhh
Q 019214 259 -ALS----------------------AVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (344)
Q Consensus 259 -~~~----------------------~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~ 310 (344)
..+ .+.+.++..-.. ..+.++....+.+++|+++|+| +++|++.+...
T Consensus 144 ~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~---~~i~~~~~~v~iVpVSA~tGeG-ideLl~~l~~l 214 (590)
T TIGR00491 144 PFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERF---DRVTDFTKTVAIIPISAITGEG-IPELLTMLAGL 214 (590)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhh---hhhhhcCCCceEEEeecCCCCC-hhHHHHHHHHH
Confidence 000 111111111000 0011223344667899999999 99999987543
No 176
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.07 E-value=8e-10 Score=92.49 Aligned_cols=109 Identities=17% Similarity=0.099 Sum_probs=60.7
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHH-HHhc---cCCcCEEEeecCCCCCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQ-AFKQ---SVSVGAVIVTKMDGHAK 255 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~-~~~~---~~~~~~lVinK~D~~~~ 255 (344)
+..+.++||||..... .+. ......+|.+++|+|++..... ..... .+.. ...+..+|+||+|....
T Consensus 42 ~~~~~i~Dt~G~~~~~-----~~~-~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~ 115 (158)
T cd04151 42 NLKFQVWDLGGQTSIR-----PYW-RCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGA 115 (158)
T ss_pred CEEEEEEECCCCHHHH-----HHH-HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCC
Confidence 5677899999985322 111 1113368999999998764221 11111 1111 12456889999998643
Q ss_pred hhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHh
Q 019214 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (344)
Q Consensus 256 ~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~ 309 (344)
.. ..+.....+. ..... ...+.+.+|+++|.| ++++++++.+
T Consensus 116 ~~-~~~i~~~~~~--------~~~~~--~~~~~~~~Sa~~~~g-i~~l~~~l~~ 157 (158)
T cd04151 116 LS-EAEISEKLGL--------SELKD--RTWSIFKTSAIKGEG-LDEGMDWLVN 157 (158)
T ss_pred CC-HHHHHHHhCc--------cccCC--CcEEEEEeeccCCCC-HHHHHHHHhc
Confidence 21 1111111110 00000 112467889999999 9999998754
No 177
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.07 E-value=4.7e-10 Score=98.28 Aligned_cols=112 Identities=13% Similarity=0.123 Sum_probs=64.6
Q ss_pred CCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc---hhHHHHHHHHh-ccCCcCEEEeecCCCCCChh--
Q 019214 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG---QAAFDQAQAFK-QSVSVGAVIVTKMDGHAKGG-- 257 (344)
Q Consensus 184 ~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~---~~~~~~~~~~~-~~~~~~~lVinK~D~~~~~~-- 257 (344)
..+.|+||||.. .+...+ +.....+|.+++|+|++.+ ....+...... ...++..+|+||+|......
T Consensus 83 ~~i~~iDtPG~~----~~~~~~--~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~~~~~ 156 (203)
T cd01888 83 RHVSFVDCPGHE----ILMATM--LSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKEEQAL 156 (203)
T ss_pred cEEEEEECCChH----HHHHHH--HHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCHHHHH
Confidence 568899999953 232222 2223467999999999863 22222222222 12234577999999865321
Q ss_pred hHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCC
Q 019214 258 GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (344)
Q Consensus 258 ~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~ 313 (344)
.....+...- +.. .....+.+.+|++.|+| +++|++.|.+.++.
T Consensus 157 ~~~~~i~~~~---------~~~--~~~~~~i~~vSA~~g~g-i~~L~~~l~~~l~~ 200 (203)
T cd01888 157 ENYEQIKKFV---------KGT--IAENAPIIPISAQLKYN-IDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHHHH---------hcc--ccCCCcEEEEeCCCCCC-HHHHHHHHHHhCCC
Confidence 1112221100 000 01123456789999999 99999999887754
No 178
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.06 E-value=2.5e-10 Score=94.53 Aligned_cols=147 Identities=15% Similarity=0.047 Sum_probs=78.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHhC
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 182 (344)
.|+++|++||||||+++++. +.+..-.... ....+.....+.. . ..
T Consensus 2 ~i~~~G~~~~GKStl~~~l~------~~~~~~~~~~----------t~~~~~~~~~~~~--~----------------~~ 47 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFV------DGKFDENYKS----------TIGVDFKSKTIEI--D----------------GK 47 (159)
T ss_pred eEEEECCCCCCHHHHHHHHH------hCcCCCccCC----------ceeeeeEEEEEEE--C----------------CE
Confidence 48899999999999999998 4332211000 0000000000000 0 01
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHhcc---CCcCEEEeecCCCCCCh
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQS---VSVGAVIVTKMDGHAKG 256 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~~~---~~~~~lVinK~D~~~~~ 256 (344)
..++.++|+||...... .. ......+|.+++|+|++..... ......+... ..+..+|+||+|.....
T Consensus 48 ~~~~~l~D~~g~~~~~~----~~--~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 121 (159)
T cd00154 48 TVKLQIWDTAGQERFRS----IT--PSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQR 121 (159)
T ss_pred EEEEEEEecCChHHHHH----HH--HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccc
Confidence 46778999999742211 11 1123458999999999864221 1222223222 24557889999995211
Q ss_pred ----hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHH
Q 019214 257 ----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIH 308 (344)
Q Consensus 257 ----~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~ 308 (344)
..........+ .+.+.+|+.+|.| ++++++.|.
T Consensus 122 ~~~~~~~~~~~~~~~------------------~~~~~~sa~~~~~-i~~~~~~i~ 158 (159)
T cd00154 122 QVSTEEAQQFAKENG------------------LLFFETSAKTGEN-VEELFQSLA 158 (159)
T ss_pred cccHHHHHHHHHHcC------------------CeEEEEecCCCCC-HHHHHHHHh
Confidence 11112222112 2234566678888 888888764
No 179
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.06 E-value=1.4e-09 Score=98.58 Aligned_cols=100 Identities=23% Similarity=0.271 Sum_probs=67.1
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHH
Q 019214 93 SFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIA 172 (344)
Q Consensus 93 ~~~~~~~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~ 172 (344)
++...+.+.-.++++|+|+||||||+++|. |-+..+.+ .+|+|...+|-...+.
T Consensus 55 gf~V~KsGda~v~lVGfPsvGKStLL~~LT------nt~seva~------------y~FTTl~~VPG~l~Y~-------- 108 (365)
T COG1163 55 GFAVKKSGDATVALVGFPSVGKSTLLNKLT------NTKSEVAD------------YPFTTLEPVPGMLEYK-------- 108 (365)
T ss_pred cceEeccCCeEEEEEcCCCccHHHHHHHHh------CCCccccc------------cCceecccccceEeec--------
Confidence 344444555789999999999999999999 76655555 4677776666433332
Q ss_pred HHHHHHHHhCCCCEEEEcCCCCCcchHHHHHH-HHHhhhhcCCcEEEEEEcCCcchh
Q 019214 173 VEGVETFKKENCDLIIVDTSGRHKQEAALFEE-MRQVSEATNPDLVIFVMDSSIGQA 228 (344)
Q Consensus 173 ~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~-l~~~~~~~~~d~illvvda~~~~~ 228 (344)
+..+-++|+||+......--.. -+.+..+..+|.+++|+|+.....
T Consensus 109 ----------ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~~ 155 (365)
T COG1163 109 ----------GAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDPH 155 (365)
T ss_pred ----------CceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCChh
Confidence 6778899999985432111000 012334557999999999986544
No 180
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.06 E-value=5.3e-10 Score=97.49 Aligned_cols=70 Identities=13% Similarity=0.095 Sum_probs=39.2
Q ss_pred CCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHHHHHHHhccCCcCEEEeecCCCCC
Q 019214 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHA 254 (344)
Q Consensus 184 ~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~~~~~~~~~~~~~~lVinK~D~~~ 254 (344)
.++.++||||.........+.++. ......|.+++|.+.............+.....+..+|+||+|...
T Consensus 52 ~~l~l~DtpG~~~~~~~~~~~l~~-~~~~~~d~~l~v~~~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~ 121 (197)
T cd04104 52 PNVTLWDLPGIGSTAFPPDDYLEE-MKFSEYDFFIIISSTRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDL 121 (197)
T ss_pred CCceEEeCCCCCcccCCHHHHHHH-hCccCcCEEEEEeCCCCCHHHHHHHHHHHHhCCCEEEEEecccchh
Confidence 467899999986432111111222 2234578888876654333333334444333344589999999843
No 181
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.05 E-value=1.3e-09 Score=91.09 Aligned_cols=149 Identities=18% Similarity=0.120 Sum_probs=82.0
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHhCC
Q 019214 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKEN 183 (344)
Q Consensus 104 i~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~ 183 (344)
|+++|.+||||||+++++. +.+.. . +. ...+..... +...+
T Consensus 2 i~iiG~~~~GKssli~~~~------~~~~~--~---~~-----------~t~~~~~~~-----------------~~~~~ 42 (158)
T cd00878 2 ILILGLDGAGKTTILYKLK------LGEVV--T---TI-----------PTIGFNVET-----------------VEYKN 42 (158)
T ss_pred EEEEcCCCCCHHHHHHHHh------cCCCC--C---CC-----------CCcCcceEE-----------------EEECC
Confidence 7899999999999999999 55411 0 00 001111100 00015
Q ss_pred CCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH---HHHHHhc----cCCcCEEEeecCCCCCCh
Q 019214 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ----SVSVGAVIVTKMDGHAKG 256 (344)
Q Consensus 184 ~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~---~~~~~~~----~~~~~~lVinK~D~~~~~ 256 (344)
..+.++||||...... .. . .....+|.+++|+|++....... ....+.. ...+..+|.||+|.....
T Consensus 43 ~~~~i~D~~G~~~~~~-~~---~--~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~ 116 (158)
T cd00878 43 VSFTVWDVGGQDKIRP-LW---K--HYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL 116 (158)
T ss_pred EEEEEEECCCChhhHH-HH---H--HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc
Confidence 6789999999753221 11 1 11235799999999986532221 1221111 123557889999986532
Q ss_pred hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHh
Q 019214 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (344)
Q Consensus 257 ~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~ 309 (344)
. ..+.....+.+. ......+.+.+|+++|.| ++++++.|..
T Consensus 117 ~-~~~~~~~~~~~~----------~~~~~~~~~~~Sa~~~~g-v~~~~~~l~~ 157 (158)
T cd00878 117 S-VSELIEKLGLEK----------ILGRRWHIQPCSAVTGDG-LDEGLDWLLQ 157 (158)
T ss_pred C-HHHHHHhhChhh----------ccCCcEEEEEeeCCCCCC-HHHHHHHHhh
Confidence 1 111111111000 011122456689999999 9999888754
No 182
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.05 E-value=7.2e-10 Score=92.95 Aligned_cols=103 Identities=13% Similarity=-0.004 Sum_probs=57.7
Q ss_pred CCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH---HHHHHhc----cCCcCEEEeecCCCCCCh
Q 019214 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ----SVSVGAVIVTKMDGHAKG 256 (344)
Q Consensus 184 ~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~---~~~~~~~----~~~~~~lVinK~D~~~~~ 256 (344)
+.+.++||||..... .+. ... ...+|.+++|+|++....... ....+.. ...+..+|.||+|.....
T Consensus 50 ~~~~i~Dt~G~~~~~-~~~---~~~--~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~ 123 (164)
T cd04145 50 AILDILDTAGQEEFS-AMR---EQY--MRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQR 123 (164)
T ss_pred EEEEEEECCCCcchh-HHH---HHH--HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccc
Confidence 456789999975322 111 111 235789999999986432211 1112211 123557889999985432
Q ss_pred h----hHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 257 G----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 257 ~----~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
. .........+ .+.+.+|+..|.| ++++++.+.+.+
T Consensus 124 ~~~~~~~~~~~~~~~------------------~~~~~~Sa~~~~~-i~~l~~~l~~~~ 163 (164)
T cd04145 124 KVSREEGQELARKLK------------------IPYIETSAKDRLN-VDKAFHDLVRVI 163 (164)
T ss_pred eecHHHHHHHHHHcC------------------CcEEEeeCCCCCC-HHHHHHHHHHhh
Confidence 1 1111111111 1335678889999 999998886543
No 183
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.05 E-value=4.5e-10 Score=98.03 Aligned_cols=111 Identities=14% Similarity=0.011 Sum_probs=61.1
Q ss_pred CCEEEEcCCCCCcchHHHHHHH-H-HhhhhcCCcEEEEEEcCCcchhHHH---HHHHHh------ccCCcCEEEeecCCC
Q 019214 184 CDLIIVDTSGRHKQEAALFEEM-R-QVSEATNPDLVIFVMDSSIGQAAFD---QAQAFK------QSVSVGAVIVTKMDG 252 (344)
Q Consensus 184 ~d~vlIDT~G~~~~~~~~~~~l-~-~~~~~~~~d~illvvda~~~~~~~~---~~~~~~------~~~~~~~lVinK~D~ 252 (344)
+.+.|+||||..........+. . .......+|.+++|+|++...+... ....+. ....+..+|.||+|+
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl 128 (198)
T cd04142 49 YDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQ 128 (198)
T ss_pred EEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccc
Confidence 6778999999743211111111 0 1122346899999999986532221 111111 122355888999998
Q ss_pred CCCh---hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 253 HAKG---GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 253 ~~~~---~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
.... ......+.. + ....+.+.+|+++|.| ++++++.+.+.+
T Consensus 129 ~~~~~~~~~~~~~~~~-----------~-----~~~~~~~e~Sak~g~~-v~~lf~~i~~~~ 173 (198)
T cd04142 129 QRHRFAPRHVLSVLVR-----------K-----SWKCGYLECSAKYNWH-ILLLFKELLISA 173 (198)
T ss_pred cccccccHHHHHHHHH-----------H-----hcCCcEEEecCCCCCC-HHHHHHHHHHHh
Confidence 5421 111111110 0 0112345688999999 999999887755
No 184
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.05 E-value=1.1e-09 Score=110.03 Aligned_cols=160 Identities=21% Similarity=0.203 Sum_probs=88.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHH
Q 019214 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (344)
Q Consensus 99 ~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 178 (344)
.++.+|+++|.+|+|||||+++|. +.++.--.. + ..+. .+..+....
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~------~~~v~~~e~----~--------GIT~-~ig~~~v~~-------------- 131 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIR------KTKVAQGEA----G--------GITQ-HIGAYHVEN-------------- 131 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH------hCCcccccC----C--------ceee-cceEEEEEE--------------
Confidence 355789999999999999999997 544431110 0 0000 000000000
Q ss_pred HHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch--hHHHHHHHHhccCCcCEEEeecCCCCCC-
Q 019214 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQSVSVGAVIVTKMDGHAK- 255 (344)
Q Consensus 179 ~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~--~~~~~~~~~~~~~~~~~lVinK~D~~~~- 255 (344)
..+..+.|+||||...... ++. .....+|.+++|+|+..+. ...+..........+..+++||+|....
T Consensus 132 --~~~~~i~~iDTPGhe~F~~-----~r~-rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~ 203 (587)
T TIGR00487 132 --EDGKMITFLDTPGHEAFTS-----MRA-RGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEAN 203 (587)
T ss_pred --CCCcEEEEEECCCCcchhh-----HHH-hhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCC
Confidence 0022678999999864321 111 2234689999999988652 2233333322222345788999998542
Q ss_pred hhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHh
Q 019214 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (344)
Q Consensus 256 ~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~ 309 (344)
.......+...+.. ...+....+.+.+|+++|+| +++|++.+..
T Consensus 204 ~e~v~~~L~~~g~~---------~~~~~~~~~~v~iSAktGeG-I~eLl~~I~~ 247 (587)
T TIGR00487 204 PDRVKQELSEYGLV---------PEDWGGDTIFVPVSALTGDG-IDELLDMILL 247 (587)
T ss_pred HHHHHHHHHHhhhh---------HHhcCCCceEEEEECCCCCC-hHHHHHhhhh
Confidence 22233333322210 00011112345689999999 9999998853
No 185
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.05 E-value=5e-10 Score=94.09 Aligned_cols=104 Identities=13% Similarity=0.003 Sum_probs=58.6
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH---HHHHHh----ccCCcCEEEeecCCCCCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFK----QSVSVGAVIVTKMDGHAK 255 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~---~~~~~~----~~~~~~~lVinK~D~~~~ 255 (344)
.+.+.++||||...... +.. .....+|.+++|.|++....... ....+. ....+..+|.||+|....
T Consensus 47 ~~~l~i~Dt~g~~~~~~-----~~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~ 120 (164)
T smart00173 47 VCLLDILDTAGQEEFSA-----MRD-QYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESE 120 (164)
T ss_pred EEEEEEEECCCcccchH-----HHH-HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 35667899999754321 111 11235788999999876432211 111111 112345788999998542
Q ss_pred hh----hHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 256 GG----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 256 ~~----~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
.. .........+ .+.+.+|+++|.| ++++++.+.+.+
T Consensus 121 ~~~~~~~~~~~~~~~~------------------~~~~~~Sa~~~~~-i~~l~~~l~~~~ 161 (164)
T smart00173 121 RVVSTEEGKELARQWG------------------CPFLETSAKERVN-VDEAFYDLVREI 161 (164)
T ss_pred ceEcHHHHHHHHHHcC------------------CEEEEeecCCCCC-HHHHHHHHHHHH
Confidence 11 1111222111 2345678889999 999999887643
No 186
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.04 E-value=3e-10 Score=95.05 Aligned_cols=149 Identities=15% Similarity=0.089 Sum_probs=81.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHhC
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 182 (344)
.|+++|++||||||+++++. +.+...- ..+ ..+..-......... .
T Consensus 2 ki~liG~~~~GKSsli~~l~------~~~~~~~-~~~-----------~~~~~~~~~~~~~~~----------------~ 47 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFM------YDTFDNQ-YQA-----------TIGIDFLSKTMYLED----------------K 47 (161)
T ss_pred EEEEECCCCCCHHHHHHHHH------cCCCCcc-CCC-----------ceeeeEEEEEEEECC----------------E
Confidence 48999999999999999998 5544321 100 000000000000000 1
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHhcc---CCcCEEEeecCCCCCCh
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQS---VSVGAVIVTKMDGHAKG 256 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~~~---~~~~~lVinK~D~~~~~ 256 (344)
.+.+.++||||..... .. ... ....+|.+++|+|.+..... ......+... ..+..+|+||+|.....
T Consensus 48 ~~~l~~~D~~G~~~~~-~~---~~~--~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~ 121 (161)
T cd01861 48 TVRLQLWDTAGQERFR-SL---IPS--YIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKR 121 (161)
T ss_pred EEEEEEEECCCcHHHH-HH---HHH--HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccC
Confidence 3457899999964221 11 111 13467899999999764322 2222222211 13457889999994321
Q ss_pred h---hHH-HHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhh
Q 019214 257 G---GAL-SAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (344)
Q Consensus 257 ~---~~~-~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~ 310 (344)
. ... ......+ .+.+.+|+.+|.| ++++.++|.+.
T Consensus 122 ~~~~~~~~~~~~~~~------------------~~~~~~Sa~~~~~-v~~l~~~i~~~ 160 (161)
T cd01861 122 QVSTEEGEKKAKELN------------------AMFIETSAKAGHN-VKELFRKIASA 160 (161)
T ss_pred ccCHHHHHHHHHHhC------------------CEEEEEeCCCCCC-HHHHHHHHHHh
Confidence 1 111 1111111 2234577889999 99999988764
No 187
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.03 E-value=3.6e-10 Score=94.75 Aligned_cols=150 Identities=13% Similarity=0.088 Sum_probs=81.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHhC
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 182 (344)
.|+++|++||||||+++.+. +.+..- ...+ .......... .... ..
T Consensus 3 ki~v~G~~~~GKSsli~~l~------~~~~~~-~~~~---------t~~~~~~~~~--v~~~----------------~~ 48 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFV------KNEFSE-NQES---------TIGAAFLTQT--VNLD----------------DT 48 (163)
T ss_pred EEEEECCCCCCHHHHHHHHH------cCCCCC-CCCC---------ccceeEEEEE--EEEC----------------CE
Confidence 58999999999999999998 443211 0000 0000000000 0000 01
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHhcc---CCcCEEEeecCCCCCCh
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQS---VSVGAVIVTKMDGHAKG 256 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~~~---~~~~~lVinK~D~~~~~ 256 (344)
+..+.++||||..... .+.. .....+|.+++|+|++..... ......+... ..+..+|.||+|.....
T Consensus 49 ~~~~~i~D~~G~~~~~-----~~~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 122 (163)
T cd01860 49 TVKFEIWDTAGQERYR-----SLAP-MYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKR 122 (163)
T ss_pred EEEEEEEeCCchHHHH-----HHHH-HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccC
Confidence 4567899999963211 1111 123467999999999865322 2222222222 12346789999986321
Q ss_pred ----hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 257 ----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 257 ----~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
..........+ .+.+.+|+.+|+| +.++++++.+.+
T Consensus 123 ~~~~~~~~~~~~~~~------------------~~~~~~Sa~~~~~-v~~l~~~l~~~l 162 (163)
T cd01860 123 QVSTEEAQEYADENG------------------LLFFETSAKTGEN-VNELFTEIAKKL 162 (163)
T ss_pred cCCHHHHHHHHHHcC------------------CEEEEEECCCCCC-HHHHHHHHHHHh
Confidence 11112222111 1235578889999 999999987764
No 188
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.02 E-value=2.4e-09 Score=91.46 Aligned_cols=152 Identities=20% Similarity=0.128 Sum_probs=83.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
..|+++|.+||||||+++++.. |.-. +..| + .+..+.. . ..
T Consensus 14 ~ki~l~G~~~~GKTsL~~~~~~-----~~~~---~~~~------------t--~~~~~~~-~----------------~~ 54 (175)
T smart00177 14 MRILMVGLDAAGKTTILYKLKL-----GESV---TTIP------------T--IGFNVET-V----------------TY 54 (175)
T ss_pred cEEEEEcCCCCCHHHHHHHHhc-----CCCC---CcCC------------c--cccceEE-E----------------EE
Confidence 5699999999999999999961 3211 1100 0 0111100 0 01
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHH-hc---cCCcCEEEeecCCCCC
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAF-KQ---SVSVGAVIVTKMDGHA 254 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~-~~---~~~~~~lVinK~D~~~ 254 (344)
.+..+.+.||||...... . .. .....+|.+++|+|++..... .+....+ .. ...+..+|.||.|+..
T Consensus 55 ~~~~l~l~D~~G~~~~~~-~---~~--~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 128 (175)
T smart00177 55 KNISFTVWDVGGQDKIRP-L---WR--HYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPD 128 (175)
T ss_pred CCEEEEEEECCCChhhHH-H---HH--HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCccc
Confidence 256778999999753221 1 11 113468999999998864222 2222222 11 1235578999999854
Q ss_pred ChhhHHHHHHHhCCCeEEEecCCCCCcCcCC-ChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVF-DVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 255 ~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~-~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
... ..+.....+ ....... ...+.+|+++|+| +++++++|.+.+
T Consensus 129 ~~~-~~~i~~~~~-----------~~~~~~~~~~~~~~Sa~~g~g-v~e~~~~l~~~~ 173 (175)
T smart00177 129 AMK-AAEITEKLG-----------LHSIRDRNWYIQPTCATSGDG-LYEGLTWLSNNL 173 (175)
T ss_pred CCC-HHHHHHHhC-----------ccccCCCcEEEEEeeCCCCCC-HHHHHHHHHHHh
Confidence 321 111111111 1111110 1123489999999 999999987653
No 189
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.02 E-value=1.2e-09 Score=91.38 Aligned_cols=103 Identities=17% Similarity=0.133 Sum_probs=58.3
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHHH---HH---HHhc-cCCcCEEEeecCCCCCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ---AQ---AFKQ-SVSVGAVIVTKMDGHAK 255 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~~---~~---~~~~-~~~~~~lVinK~D~~~~ 255 (344)
.+.+.++||||..... .. ... ....+|.+++|+|++........ .. .+.. ...+..+|.||+|....
T Consensus 48 ~~~~~l~D~~g~~~~~-~~---~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~ 121 (161)
T cd01863 48 KVKLAIWDTAGQERFR-TL---TSS--YYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENR 121 (161)
T ss_pred EEEEEEEECCCchhhh-hh---hHH--HhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccccc
Confidence 4677899999964221 11 111 12368999999998765322221 11 1211 12335788999998632
Q ss_pred h---hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhh
Q 019214 256 G---GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (344)
Q Consensus 256 ~---~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~ 310 (344)
. ..........+ .+.+.+|++.|+| ++++++.+.+.
T Consensus 122 ~~~~~~~~~~~~~~~------------------~~~~~~Sa~~~~g-i~~~~~~~~~~ 160 (161)
T cd01863 122 EVTREEGLKFARKHN------------------MLFIETSAKTRDG-VQQAFEELVEK 160 (161)
T ss_pred ccCHHHHHHHHHHcC------------------CEEEEEecCCCCC-HHHHHHHHHHh
Confidence 2 11122222111 1245578889999 99999887654
No 190
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.02 E-value=4.6e-09 Score=87.96 Aligned_cols=103 Identities=14% Similarity=0.057 Sum_probs=58.7
Q ss_pred CCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH---HHHHHhc---cCCcCEEEeecCCCCCCh-
Q 019214 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ---SVSVGAVIVTKMDGHAKG- 256 (344)
Q Consensus 184 ~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~---~~~~~~~---~~~~~~lVinK~D~~~~~- 256 (344)
+.+.++||||..... .+. ......+|.+++|+|++....... ....+.. ...+..+|.||+|.....
T Consensus 49 ~~~~l~D~~G~~~~~-----~~~-~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~ 122 (164)
T smart00175 49 VKLQIWDTAGQERFR-----SIT-SSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQ 122 (164)
T ss_pred EEEEEEECCChHHHH-----HHH-HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccC
Confidence 467799999964211 111 111346899999999986533222 2222221 224567889999986421
Q ss_pred ---hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 257 ---GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 257 ---~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
..........+.+ .+.+|+..|+| ++.+++.|.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~------------------~~e~Sa~~~~~-i~~l~~~i~~~~ 161 (164)
T smart00175 123 VSREEAEAFAEEHGLP------------------FFETSAKTNTN-VEEAFEELAREI 161 (164)
T ss_pred CCHHHHHHHHHHcCCe------------------EEEEeCCCCCC-HHHHHHHHHHHH
Confidence 1122222222222 34456678889 999998887654
No 191
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.02 E-value=1.8e-09 Score=91.50 Aligned_cols=111 Identities=16% Similarity=0.061 Sum_probs=58.9
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHhc----cCCcCEEEeecCCCCCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ----SVSVGAVIVTKMDGHAK 255 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~~----~~~~~~lVinK~D~~~~ 255 (344)
++.+.++||||..... .+ .......+|.+++|+|++..... ......+.. ...+..+|.||.|....
T Consensus 42 ~~~~~i~D~~G~~~~~-----~~-~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~ 115 (167)
T cd04161 42 KYEVCIFDLGGGANFR-----GI-WVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNA 115 (167)
T ss_pred CEEEEEEECCCcHHHH-----HH-HHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCC
Confidence 5678899999974221 11 11223468999999999864322 222222221 12355888999998653
Q ss_pred hhhHHHHHHHhCCCeEEEecCCCCC-cCcCCChHHHHHHHhC------CCChhHHHHHHHh
Q 019214 256 GGGALSAVAATKSPVIFIGTGEHMD-EFEVFDVKPFVSRLLG------MGDWSGFMDKIHE 309 (344)
Q Consensus 256 ~~~~~~~~~~~~~pv~~~~~g~~~~-~l~~~~~~~~is~~~g------~g~i~~l~~~i~~ 309 (344)
.. ..+.....+. +.+. ...........|++.| .| +.+-++++.+
T Consensus 116 ~~-~~~i~~~~~l--------~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g-~~~~~~wl~~ 166 (167)
T cd04161 116 LL-GADVIEYLSL--------EKLVNENKSLCHIEPCSAIEGLGKKIDPS-IVEGLRWLLA 166 (167)
T ss_pred CC-HHHHHHhcCc--------ccccCCCCceEEEEEeEceeCCCCccccC-HHHHHHHHhc
Confidence 21 1111111111 1110 0011112344788887 77 8888888754
No 192
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.02 E-value=3.6e-09 Score=88.56 Aligned_cols=104 Identities=12% Similarity=0.018 Sum_probs=59.0
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchh---HHHHHHHHhc----cCCcCEEEeecCCCCCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQAQAFKQ----SVSVGAVIVTKMDGHAK 255 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~---~~~~~~~~~~----~~~~~~lVinK~D~~~~ 255 (344)
.+.+.++||||..... .+.. .....++.+++++|.+.... .......+.. ...+..+|+||+|....
T Consensus 47 ~~~~~i~D~~g~~~~~-----~~~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~ 120 (164)
T cd04139 47 DVQLNILDTAGQEDYA-----AIRD-NYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDK 120 (164)
T ss_pred EEEEEEEECCChhhhh-----HHHH-HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccc
Confidence 4567899999974322 1111 12235688889998765422 1222222221 12345788999998652
Q ss_pred h----hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 256 G----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 256 ~----~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
. ..........+ .+.+.+|+++|+| ++++++.+.+.+
T Consensus 121 ~~~~~~~~~~~~~~~~------------------~~~~~~Sa~~~~g-i~~l~~~l~~~~ 161 (164)
T cd04139 121 RQVSSEEAANLARQWG------------------VPYVETSAKTRQN-VEKAFYDLVREI 161 (164)
T ss_pred cccCHHHHHHHHHHhC------------------CeEEEeeCCCCCC-HHHHHHHHHHHH
Confidence 1 11112222111 1345678889999 999998887654
No 193
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.02 E-value=5.4e-09 Score=96.00 Aligned_cols=120 Identities=18% Similarity=0.176 Sum_probs=68.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
....|+++|.+||||||++|.|. |.++..++.- ...+.........
T Consensus 37 ~~~rIllvGktGVGKSSliNsIl------G~~v~~vs~f-----------~s~t~~~~~~~~~----------------- 82 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSII------GERIATVSAF-----------QSEGLRPMMVSRT----------------- 82 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHh------CCCcccccCC-----------CCcceeEEEEEEE-----------------
Confidence 34679999999999999999999 9888776541 0000000000000
Q ss_pred HhCCCCEEEEcCCCCCcchH---HHHHHHHHhhhhcCCcEEEEEEc--CCcch-hHHHHHH----HHhcc-CCcCEEEee
Q 019214 180 KKENCDLIIVDTSGRHKQEA---ALFEEMRQVSEATNPDLVIFVMD--SSIGQ-AAFDQAQ----AFKQS-VSVGAVIVT 248 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~~---~~~~~l~~~~~~~~~d~illvvd--a~~~~-~~~~~~~----~~~~~-~~~~~lVin 248 (344)
..+..+.+|||||+..... ...+.++.+.....+|.+++|.. ..... .....+. .|.+. ....++|+|
T Consensus 83 -~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfT 161 (313)
T TIGR00991 83 -RAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLT 161 (313)
T ss_pred -ECCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEE
Confidence 0267889999999876431 11122222222336899999954 32221 2122222 22211 134588899
Q ss_pred cCCCCC
Q 019214 249 KMDGHA 254 (344)
Q Consensus 249 K~D~~~ 254 (344)
+.|...
T Consensus 162 h~d~~~ 167 (313)
T TIGR00991 162 HAQFSP 167 (313)
T ss_pred CCccCC
Confidence 999763
No 194
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.01 E-value=4.4e-10 Score=94.20 Aligned_cols=103 Identities=17% Similarity=0.013 Sum_probs=58.9
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH---HHH---HHhccCCcCEEEeecCCCCCCh
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQ---AFKQSVSVGAVIVTKMDGHAKG 256 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~---~~~---~~~~~~~~~~lVinK~D~~~~~ 256 (344)
.+.+.++||||..... .+. ......+|.+++|+|++....... ... .+.....+..+|.||+|.....
T Consensus 48 ~~~l~l~D~~G~~~~~-----~~~-~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 121 (161)
T cd04113 48 RVKLQIWDTAGQERFR-----SVT-RSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQR 121 (161)
T ss_pred EEEEEEEECcchHHHH-----HhH-HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhc
Confidence 4567899999974221 111 111346899999999987533222 222 2222223457889999985421
Q ss_pred h----hHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhh
Q 019214 257 G----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (344)
Q Consensus 257 ~----~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~ 310 (344)
. .........+ .+.+.+|+++|.| ++++++++.+.
T Consensus 122 ~~~~~~~~~~~~~~~------------------~~~~~~Sa~~~~~-i~~~~~~~~~~ 160 (161)
T cd04113 122 EVTFLEASRFAQENG------------------LLFLETSALTGEN-VEEAFLKCARS 160 (161)
T ss_pred cCCHHHHHHHHHHcC------------------CEEEEEECCCCCC-HHHHHHHHHHh
Confidence 1 1112222111 2345578889999 99999887654
No 195
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=99.01 E-value=1.4e-08 Score=91.87 Aligned_cols=146 Identities=16% Similarity=0.192 Sum_probs=80.9
Q ss_pred CeEEEEE-cCCCCCHHHHHHHHHHHH-HHcCCccEEeecCcCcchh-------------HHHHHh---------hcccCC
Q 019214 101 PSVIMFV-GLQGSGKTTTCTKYAYYH-QKKGWKPALVCADTFRAGA-------------FDQLKQ---------NATKAK 156 (344)
Q Consensus 101 ~~ii~iv-G~~GvGKTTl~~~La~~l-~~~g~~v~iv~~D~~~~~~-------------~~~l~~---------~~~~~~ 156 (344)
.++|+++ |+.||||||+++||+..+ +..|++|.++|.|+..+.. .+.+.. .+...|
T Consensus 2 ~~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V~~iDaD~g~~nL~~~~g~~~~~~~l~dvL~~~~~~~Di~~~~~~~g 81 (262)
T COG0455 2 TKVIAVVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLLGVESKPTTLHDVLAGEASIEDIIYETPQDG 81 (262)
T ss_pred CEEEEEEecCCCccHHHHHHhHHHHHHhhCCCeEEEEecCCCCCcHHHHhCCCCCcccHHHHHhCCCCHhHeeeecCcCC
Confidence 3678887 999999999999995555 5567777999999844321 111211 111144
Q ss_pred cceeccCCCCCHH-----HHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc--hhH
Q 019214 157 IPFYGSYTESDPV-----RIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QAA 229 (344)
Q Consensus 157 v~~~~~~~~~~~~-----~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~--~~~ 229 (344)
+.+.......+.. +.....++.+.. .+|+++||||+-...+ . +.....+|.+++|..+... .+.
T Consensus 82 l~vipg~~~~~~~~~~~~~~~~~~~~~l~~-~~D~iliD~~aGl~~~--~------~~~~~~sd~~viVt~pe~~si~~A 152 (262)
T COG0455 82 LYVLPGGSGLEDLAKLDPEDLEDVIKELEE-LYDYILIDTGAGLSRD--T------LSFILSSDELVIVTTPEPTSITDA 152 (262)
T ss_pred EEEeeCCCChHHHhhcCHHHHHHHHHHHHh-cCCEEEEeCCCCccHH--H------HHHHHhcCcEEEEeCCCcchHHHH
Confidence 4443322222111 112233444443 5699999996544322 1 1122335888888887643 233
Q ss_pred HHHHHHHhc-cCCcCE--EEeecCCCCCC
Q 019214 230 FDQAQAFKQ-SVSVGA--VIVTKMDGHAK 255 (344)
Q Consensus 230 ~~~~~~~~~-~~~~~~--lVinK~D~~~~ 255 (344)
+........ .....+ +|+|+++....
T Consensus 153 ~~~i~~~~~~~~~~~~~~vV~N~v~~~~e 181 (262)
T COG0455 153 YKTIKILSKLGLDLLGRRVVLNRVRSTKE 181 (262)
T ss_pred HHHHHHHHHcCCccccceEEEEecccccc
Confidence 333332222 222234 89999985443
No 196
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.01 E-value=1.8e-09 Score=108.62 Aligned_cols=114 Identities=17% Similarity=0.205 Sum_probs=61.7
Q ss_pred CEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc--hhHHHHHHHHhccCCcCEEEeecCCCCCChhh----
Q 019214 185 DLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGG---- 258 (344)
Q Consensus 185 d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~--~~~~~~~~~~~~~~~~~~lVinK~D~~~~~~~---- 258 (344)
.+.|+||||..... .+.. .....+|.+++|+|++.+ ....+....+.....+..+++||+|.......
T Consensus 72 ~i~~iDTPG~e~f~-----~~~~-~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~ 145 (586)
T PRK04004 72 GLLFIDTPGHEAFT-----NLRK-RGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDA 145 (586)
T ss_pred CEEEEECCChHHHH-----HHHH-HhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCc
Confidence 36899999985322 1111 123458999999999875 22233333333222345788999997521110
Q ss_pred -----------------------HHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHH
Q 019214 259 -----------------------ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIH 308 (344)
Q Consensus 259 -----------------------~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~ 308 (344)
....+...++....+. .+.++....+.+.+|+++|+| +++|++.+.
T Consensus 146 ~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~---~~~~~~~~v~ivpiSA~tGeG-i~dLl~~i~ 214 (586)
T PRK04004 146 PFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFD---RVKDFTKTVAIVPVSAKTGEG-IPDLLMVLA 214 (586)
T ss_pred hHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhh---hhhccCCCceEeeccCCCCCC-hHHHHHHHH
Confidence 0011222222111110 011122234567789999999 999888874
No 197
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.01 E-value=2.5e-09 Score=90.33 Aligned_cols=107 Identities=14% Similarity=0.075 Sum_probs=61.9
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH----HHHHHhc--cCCcCEEEeecCCCCCCh
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQ--SVSVGAVIVTKMDGHAKG 256 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~----~~~~~~~--~~~~~~lVinK~D~~~~~ 256 (344)
++.+.++||||....... +... ...+|.+++|+|.+....... ....+.. ...+..+|.||+|.....
T Consensus 46 ~~~~~i~Dt~G~~~~~~~----~~~~--~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~ 119 (166)
T cd01893 46 RVPTTIVDTSSRPQDRAN----LAAE--IRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGS 119 (166)
T ss_pred eEEEEEEeCCCchhhhHH----Hhhh--cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccc
Confidence 567889999997532211 1111 246889999999876533222 1122221 123557889999986532
Q ss_pred hh-----HHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 257 GG-----ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 257 ~~-----~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
.. ....+.. .+....+.+.+|+..|.| ++++++.+.+.+
T Consensus 120 ~~~~~~~~~~~~~~---------------~~~~~~~~~e~Sa~~~~~-v~~lf~~~~~~~ 163 (166)
T cd01893 120 SQAGLEEEMLPIMN---------------EFREIETCVECSAKTLIN-VSEVFYYAQKAV 163 (166)
T ss_pred chhHHHHHHHHHHH---------------HHhcccEEEEeccccccC-HHHHHHHHHHHh
Confidence 11 1111110 001112345678999999 999999988865
No 198
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.01 E-value=1.2e-09 Score=91.90 Aligned_cols=104 Identities=13% Similarity=0.072 Sum_probs=59.8
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHhcc--CCcCEEEeecCCCCCChh
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQS--VSVGAVIVTKMDGHAKGG 257 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~~~--~~~~~lVinK~D~~~~~~ 257 (344)
.+.+.+.||||..... .+.. .....+|.+++|+|++..... ......+... ..+..+|.||+|......
T Consensus 48 ~~~~~i~Dt~G~~~~~-----~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~~ 121 (161)
T cd04124 48 TILVDFWDTAGQERFQ-----TMHA-SYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSVT 121 (161)
T ss_pred EEEEEEEeCCCchhhh-----hhhH-HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhHH
Confidence 4567799999974321 1111 113468999999999865322 2222333221 235588999999853211
Q ss_pred hH-HHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 258 GA-LSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 258 ~~-~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
.. .......+ .+.+.+|+++|.| ++++++.+.+..
T Consensus 122 ~~~~~~~~~~~------------------~~~~~~Sa~~~~g-v~~l~~~l~~~~ 157 (161)
T cd04124 122 QKKFNFAEKHN------------------LPLYYVSAADGTN-VVKLFQDAIKLA 157 (161)
T ss_pred HHHHHHHHHcC------------------CeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 11 11111111 1345578889999 999998887643
No 199
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.00 E-value=4e-09 Score=90.73 Aligned_cols=109 Identities=17% Similarity=0.140 Sum_probs=61.4
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHH---HHHHHHh----ccCCcCEEEeecCCCCCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFK----QSVSVGAVIVTKMDGHAK 255 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~---~~~~~~~----~~~~~~~lVinK~D~~~~ 255 (344)
+..+.++||||..... .+. -.....+|.+++|+|++...... .....+. ....+..+|+||+|....
T Consensus 51 ~~~l~l~Dt~G~~~~~-----~~~-~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~ 124 (183)
T cd04152 51 GITFHFWDVGGQEKLR-----PLW-KSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA 124 (183)
T ss_pred ceEEEEEECCCcHhHH-----HHH-HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc
Confidence 4678899999974221 111 11133689999999988652211 1111111 122456888999998532
Q ss_pred hh-hHHHHHHHhCCCeEEEecCCCCCcCcC--CChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 256 GG-GALSAVAATKSPVIFIGTGEHMDEFEV--FDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 256 ~~-~~~~~~~~~~~pv~~~~~g~~~~~l~~--~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
.. ........ +.+... ..+.+.+|+.+|+| +++++++|.+.+
T Consensus 125 ~~~~~~~~~~~-------------~~~~~~~~~~~~~~~SA~~~~g-i~~l~~~l~~~l 169 (183)
T cd04152 125 LSVSEVEKLLA-------------LHELSASTPWHVQPACAIIGEG-LQEGLEKLYEMI 169 (183)
T ss_pred CCHHHHHHHhC-------------ccccCCCCceEEEEeecccCCC-HHHHHHHHHHHH
Confidence 11 11111110 111111 12345689999999 999999988765
No 200
>PRK12736 elongation factor Tu; Reviewed
Probab=99.00 E-value=2.3e-09 Score=103.38 Aligned_cols=127 Identities=20% Similarity=0.197 Sum_probs=69.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEee--cCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC--ADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE 177 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~--~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 177 (344)
+...|+++|.+++|||||+.+|.......|....... .|.. .+......+..-... ..
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~----~~E~~rg~T~~~~~~--~~-------------- 70 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAA----PEEKERGITINTAHV--EY-------------- 70 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCC----HHHHhcCccEEEEee--Ee--------------
Confidence 4467999999999999999999865444333221111 1110 011111111111100 00
Q ss_pred HHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch--hHHHHHHHHhcc-CCcCEEEeecCCCCC
Q 019214 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQS-VSVGAVIVTKMDGHA 254 (344)
Q Consensus 178 ~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~--~~~~~~~~~~~~-~~~~~lVinK~D~~~ 254 (344)
...+..+.||||||.. ++...+ +.....+|.+++|+|+..+. ...+.+...... .+..++++||+|...
T Consensus 71 --~~~~~~i~~iDtPGh~----~f~~~~--~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~ 142 (394)
T PRK12736 71 --ETEKRHYAHVDCPGHA----DYVKNM--ITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVD 142 (394)
T ss_pred --cCCCcEEEEEECCCHH----HHHHHH--HHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcc
Confidence 1125678999999953 333333 22234689999999998752 222333332222 222356799999863
No 201
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.00 E-value=3.6e-09 Score=88.85 Aligned_cols=108 Identities=18% Similarity=0.090 Sum_probs=59.4
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHH-hc---cCCcCEEEeecCCCCCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAF-KQ---SVSVGAVIVTKMDGHAK 255 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~-~~---~~~~~~lVinK~D~~~~ 255 (344)
+..+.+.||||..... .+. -.....+|.+++|+|++..... ....... .. ...+..++.||.|+...
T Consensus 43 ~~~~~l~D~~G~~~~~-----~~~-~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 116 (159)
T cd04150 43 NISFTVWDVGGQDKIR-----PLW-RHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA 116 (159)
T ss_pred CEEEEEEECCCCHhHH-----HHH-HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC
Confidence 5667899999974321 111 1123568999999999764221 1212211 11 12355788999998543
Q ss_pred hhhHHHHHHHhCCCeEEEecCCCCCcCc-CCChHHHHHHHhCCCChhHHHHHHHh
Q 019214 256 GGGALSAVAATKSPVIFIGTGEHMDEFE-VFDVKPFVSRLLGMGDWSGFMDKIHE 309 (344)
Q Consensus 256 ~~~~~~~~~~~~~pv~~~~~g~~~~~l~-~~~~~~~is~~~g~g~i~~l~~~i~~ 309 (344)
.. ..+.....+. ..+. .....+.+|+++|+| +++++++|.+
T Consensus 117 ~~-~~~i~~~~~~-----------~~~~~~~~~~~~~Sak~g~g-v~~~~~~l~~ 158 (159)
T cd04150 117 MS-AAEVTDKLGL-----------HSLRNRNWYIQATCATSGDG-LYEGLDWLSN 158 (159)
T ss_pred CC-HHHHHHHhCc-----------cccCCCCEEEEEeeCCCCCC-HHHHHHHHhc
Confidence 21 1111121111 1111 011234579999999 9999998754
No 202
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.00 E-value=3.1e-09 Score=91.44 Aligned_cols=152 Identities=17% Similarity=0.088 Sum_probs=82.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
..|+++|++||||||+++++.. |.-+ ...| + .+..+.. .. .
T Consensus 18 ~kv~lvG~~~vGKTsli~~~~~-----~~~~---~~~~------------T--~~~~~~~-~~----------------~ 58 (182)
T PTZ00133 18 VRILMVGLDAAGKTTILYKLKL-----GEVV---TTIP------------T--IGFNVET-VE----------------Y 58 (182)
T ss_pred cEEEEEcCCCCCHHHHHHHHhc-----CCcc---ccCC------------c--cccceEE-EE----------------E
Confidence 4599999999999999999961 2211 1101 0 0111000 00 0
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHH-hc---cCCcCEEEeecCCCCC
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAF-KQ---SVSVGAVIVTKMDGHA 254 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~-~~---~~~~~~lVinK~D~~~ 254 (344)
.++.+.++||||..... .+ .......+|.+++|+|++..... ......+ .. ...+..+|.||.|+..
T Consensus 59 ~~~~~~l~D~~G~~~~~-----~~-~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 132 (182)
T PTZ00133 59 KNLKFTMWDVGGQDKLR-----PL-WRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPN 132 (182)
T ss_pred CCEEEEEEECCCCHhHH-----HH-HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC
Confidence 25678899999974321 11 11123468999999998754221 1112211 11 1235578899999854
Q ss_pred ChhhHHHHHHHhCCCeEEEecCCCCCcCcCC-ChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVF-DVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 255 ~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~-~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
.... .+.....+. +.+... ...+.+|+++|.| +++++++|.+.+
T Consensus 133 ~~~~-~~i~~~l~~-----------~~~~~~~~~~~~~Sa~tg~g-v~e~~~~l~~~i 177 (182)
T PTZ00133 133 AMST-TEVTEKLGL-----------HSVRQRNWYIQGCCATTAQG-LYEGLDWLSANI 177 (182)
T ss_pred CCCH-HHHHHHhCC-----------CcccCCcEEEEeeeCCCCCC-HHHHHHHHHHHH
Confidence 3211 112222221 111110 1123479999999 999999987654
No 203
>PRK12735 elongation factor Tu; Reviewed
Probab=99.00 E-value=8.7e-09 Score=99.38 Aligned_cols=127 Identities=20% Similarity=0.132 Sum_probs=68.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEe--ecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALV--CADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE 177 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv--~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 177 (344)
+...|+++|.+++|||||+++|.......|..-... ..|.. -+....+.+..-.... .
T Consensus 11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~----~~E~~rGiT~~~~~~~--~-------------- 70 (396)
T PRK12735 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNA----PEEKARGITINTSHVE--Y-------------- 70 (396)
T ss_pred CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCC----hhHHhcCceEEEeeeE--E--------------
Confidence 346799999999999999999997655444321111 01110 0111111111110000 0
Q ss_pred HHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch--hHHHHHHHHhccCCcCE-EEeecCCCCC
Q 019214 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQSVSVGA-VIVTKMDGHA 254 (344)
Q Consensus 178 ~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~--~~~~~~~~~~~~~~~~~-lVinK~D~~~ 254 (344)
...+..+.|+||||+. .+...+. .....+|.+++|+|+..+. ...+.+........+.+ +++||+|...
T Consensus 71 --~~~~~~i~~iDtPGh~----~f~~~~~--~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~ 142 (396)
T PRK12735 71 --ETANRHYAHVDCPGHA----DYVKNMI--TGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVD 142 (396)
T ss_pred --cCCCcEEEEEECCCHH----HHHHHHH--hhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcc
Confidence 1125678999999973 3333332 2234689999999998752 22223332222112224 4699999864
No 204
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.99 E-value=2.6e-09 Score=89.16 Aligned_cols=102 Identities=17% Similarity=0.060 Sum_probs=56.3
Q ss_pred CCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH---HHHHHhc----cCCcCEEEeecCCCCCCh
Q 019214 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ----SVSVGAVIVTKMDGHAKG 256 (344)
Q Consensus 184 ~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~---~~~~~~~----~~~~~~lVinK~D~~~~~ 256 (344)
+.+.++||||..... . +.. .....+|.+++|+|.+....... ....+.. ...+..+|.||+|.....
T Consensus 49 ~~~~i~Dt~G~~~~~-~----l~~-~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~ 122 (162)
T cd04138 49 CLLDILDTAGQEEYS-A----MRD-QYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAART 122 (162)
T ss_pred EEEEEEECCCCcchH-H----HHH-HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccce
Confidence 345689999975322 1 111 11235788889988875422111 1122211 123457889999986532
Q ss_pred h---hHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhh
Q 019214 257 G---GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (344)
Q Consensus 257 ~---~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~ 310 (344)
. .........+ .+.+.+|+++|.| ++++++.+.+.
T Consensus 123 ~~~~~~~~~~~~~~------------------~~~~~~Sa~~~~g-i~~l~~~l~~~ 160 (162)
T cd04138 123 VSSRQGQDLAKSYG------------------IPYIETSAKTRQG-VEEAFYTLVRE 160 (162)
T ss_pred ecHHHHHHHHHHhC------------------CeEEEecCCCCCC-HHHHHHHHHHH
Confidence 1 1111222111 1234578889999 99999888654
No 205
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.99 E-value=1e-09 Score=91.38 Aligned_cols=103 Identities=12% Similarity=-0.041 Sum_probs=58.6
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHH---HHHHHHh---c-cCCcCEEEeecCCCCCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFK---Q-SVSVGAVIVTKMDGHAK 255 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~---~~~~~~~---~-~~~~~~lVinK~D~~~~ 255 (344)
.+.+.++|+||..... .. ... .....|.+++|+|.+...... .....+. . ...+..+|.||+|....
T Consensus 46 ~~~~~l~D~~g~~~~~-~~---~~~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 119 (160)
T cd00876 46 TYTLDILDTAGQEEFS-AM---RDL--YIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENE 119 (160)
T ss_pred EEEEEEEECCChHHHH-HH---HHH--HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCccccc
Confidence 3567899999975321 11 111 123578999999987643221 1122221 1 23455788999998652
Q ss_pred hh----hHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhh
Q 019214 256 GG----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (344)
Q Consensus 256 ~~----~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~ 310 (344)
.. .........+ .+.+.+|+..|+| +.++++.|.+.
T Consensus 120 ~~~~~~~~~~~~~~~~------------------~~~~~~S~~~~~~-i~~l~~~l~~~ 159 (160)
T cd00876 120 RQVSKEEGKALAKEWG------------------CPFIETSAKDNIN-IDEVFKLLVRE 159 (160)
T ss_pred ceecHHHHHHHHHHcC------------------CcEEEeccCCCCC-HHHHHHHHHhh
Confidence 11 1111222111 2345678888999 99999888654
No 206
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.98 E-value=3.5e-10 Score=96.10 Aligned_cols=121 Identities=14% Similarity=0.110 Sum_probs=61.9
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHHH----HHHHhc--cCCcCEEEeecCCCCCCh
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ----AQAFKQ--SVSVGAVIVTKMDGHAKG 256 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~~----~~~~~~--~~~~~~lVinK~D~~~~~ 256 (344)
.+.+.++||||..... .+... ....+|.+++|.|.+........ ...+.. ...+.++|.||+|.....
T Consensus 45 ~~~~~i~Dt~G~~~~~-----~~~~~-~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~ 118 (174)
T smart00174 45 PVELGLWDTAGQEDYD-----RLRPL-SYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDK 118 (174)
T ss_pred EEEEEEEECCCCcccc-----hhchh-hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhCh
Confidence 4567899999975322 11111 13368999999998764322211 222221 124558899999986532
Q ss_pred hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 257 ~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
............++. ...++.+..-....+.+.+|+++|+| ++++++.+.+.+
T Consensus 119 ~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~e~Sa~~~~~-v~~lf~~l~~~~ 171 (174)
T smart00174 119 STLRELSKQKQEPVT-YEQGEALAKRIGAVKYLECSALTQEG-VREVFEEAIRAA 171 (174)
T ss_pred hhhhhhhcccCCCcc-HHHHHHHHHHcCCcEEEEecCCCCCC-HHHHHHHHHHHh
Confidence 211111100000000 00000010001112335579999999 999999887653
No 207
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.98 E-value=1.1e-09 Score=91.86 Aligned_cols=103 Identities=17% Similarity=0.073 Sum_probs=58.4
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchh---HHHHHHHHhc--------cCCcCEEEeecCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQAQAFKQ--------SVSVGAVIVTKMD 251 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~---~~~~~~~~~~--------~~~~~~lVinK~D 251 (344)
.+.+.++||||..... .+... ....+|.+++|+|++.... .......+.. ...+..+|.||+|
T Consensus 48 ~~~l~i~Dt~G~~~~~-----~~~~~-~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 121 (168)
T cd04119 48 EVRVNFFDLSGHPEYL-----EVRNE-FYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKID 121 (168)
T ss_pred EEEEEEEECCccHHHH-----HHHHH-HhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchh
Confidence 4677899999974211 12111 1346899999999986422 1122222211 1234588899999
Q ss_pred CCCCh---hh-HHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhh
Q 019214 252 GHAKG---GG-ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (344)
Q Consensus 252 ~~~~~---~~-~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~ 310 (344)
..... .. ........+. +.+.+|+.+|+| ++++++.|.+.
T Consensus 122 l~~~~~~~~~~~~~~~~~~~~------------------~~~~~Sa~~~~g-i~~l~~~l~~~ 165 (168)
T cd04119 122 LTKHRAVSEDEGRLWAESKGF------------------KYFETSACTGEG-VNEMFQTLFSS 165 (168)
T ss_pred cccccccCHHHHHHHHHHcCC------------------eEEEEECCCCCC-HHHHHHHHHHH
Confidence 86321 11 1122221121 234567788999 99999988654
No 208
>CHL00071 tufA elongation factor Tu
Probab=98.98 E-value=3.9e-09 Score=102.27 Aligned_cols=128 Identities=22% Similarity=0.179 Sum_probs=68.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEe--ecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALV--CADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE 177 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv--~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 177 (344)
+...++++|.+++|||||+++|.........+.... ..|... +.-.++.+..-....
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~----~e~~rg~T~~~~~~~----------------- 69 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAP----EEKARGITINTAHVE----------------- 69 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCCh----hhhcCCEeEEccEEE-----------------
Confidence 346799999999999999999996543211111111 111110 000111111111000
Q ss_pred HHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch--hHHHHHHHHhcc-CCcCEEEeecCCCCC
Q 019214 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQS-VSVGAVIVTKMDGHA 254 (344)
Q Consensus 178 ~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~--~~~~~~~~~~~~-~~~~~lVinK~D~~~ 254 (344)
+..++..+.||||||+. .+...+ +.....+|.+++|+|+..+. ...+.+...... .+..++++||+|...
T Consensus 70 -~~~~~~~~~~iDtPGh~----~~~~~~--~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~ 142 (409)
T CHL00071 70 -YETENRHYAHVDCPGHA----DYVKNM--ITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVD 142 (409)
T ss_pred -EccCCeEEEEEECCChH----HHHHHH--HHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCC
Confidence 01125678999999953 333333 22234689999999998763 222233322222 222356799999875
Q ss_pred C
Q 019214 255 K 255 (344)
Q Consensus 255 ~ 255 (344)
.
T Consensus 143 ~ 143 (409)
T CHL00071 143 D 143 (409)
T ss_pred H
Confidence 3
No 209
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.98 E-value=1.3e-09 Score=91.29 Aligned_cols=106 Identities=14% Similarity=0.054 Sum_probs=57.2
Q ss_pred CCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHh---c-cCCcCEEEeecCCCCCCh
Q 019214 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFK---Q-SVSVGAVIVTKMDGHAKG 256 (344)
Q Consensus 184 ~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~---~-~~~~~~lVinK~D~~~~~ 256 (344)
+.+.|.||||..... .+... ....+|.+++|.|.+..... ......+. . ...+..+|.||+|+....
T Consensus 49 ~~l~i~Dt~G~~~~~-----~~~~~-~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 122 (163)
T cd04136 49 CMLEILDTAGTEQFT-----AMRDL-YIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDER 122 (163)
T ss_pred EEEEEEECCCccccc-----hHHHH-HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc
Confidence 455689999975322 12111 12357899999998754221 11222221 1 123457889999985421
Q ss_pred hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhh
Q 019214 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (344)
Q Consensus 257 ~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~ 310 (344)
........... + ... .+.+.+|+++|.| +.++++++.+.
T Consensus 123 ~~~~~~~~~~~---------~---~~~--~~~~~~Sa~~~~~-v~~l~~~l~~~ 161 (163)
T cd04136 123 VVSREEGQALA---------R---QWG--CPFYETSAKSKIN-VDEVFADLVRQ 161 (163)
T ss_pred eecHHHHHHHH---------H---HcC--CeEEEecCCCCCC-HHHHHHHHHHh
Confidence 11111110000 0 001 2345678899999 99999988764
No 210
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.98 E-value=2.4e-09 Score=110.16 Aligned_cols=159 Identities=19% Similarity=0.204 Sum_probs=89.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHH
Q 019214 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (344)
Q Consensus 99 ~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 178 (344)
.++.+|+++|.+|+|||||+.+|. +.++. +.. ++ ..+. .+..+...
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr------~~~v~--~~e-~~---------GIT~-~iga~~v~--------------- 333 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIR------KTNVA--AGE-AG---------GITQ-HIGAYQVE--------------- 333 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH------hCCcc--ccc-cC---------ceee-eccEEEEE---------------
Confidence 466899999999999999999996 43332 110 00 0000 01001100
Q ss_pred HHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc--hhHHHHHHHHhccCCcCEEEeecCCCCCC-
Q 019214 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QAAFDQAQAFKQSVSVGAVIVTKMDGHAK- 255 (344)
Q Consensus 179 ~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~--~~~~~~~~~~~~~~~~~~lVinK~D~~~~- 255 (344)
..++.+.|+||||...... +.. .....+|.+++|+|+..+ ....+..........+.++++||+|....
T Consensus 334 --~~~~~ItfiDTPGhe~F~~-----m~~-rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~ 405 (787)
T PRK05306 334 --TNGGKITFLDTPGHEAFTA-----MRA-RGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGAN 405 (787)
T ss_pred --ECCEEEEEEECCCCccchh-----HHH-hhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccC
Confidence 1146678999999864321 111 123457999999999865 22223333222222345788999998542
Q ss_pred hhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHh
Q 019214 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (344)
Q Consensus 256 ~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~ 309 (344)
...+...+...+. ...+.....+.+.+|+++|+| ++.|++.|..
T Consensus 406 ~e~V~~eL~~~~~---------~~e~~g~~vp~vpvSAktG~G-I~eLle~I~~ 449 (787)
T PRK05306 406 PDRVKQELSEYGL---------VPEEWGGDTIFVPVSAKTGEG-IDELLEAILL 449 (787)
T ss_pred HHHHHHHHHHhcc---------cHHHhCCCceEEEEeCCCCCC-chHHHHhhhh
Confidence 2223333322110 001111123456789999999 9999998864
No 211
>PRK00049 elongation factor Tu; Reviewed
Probab=98.98 E-value=5.1e-09 Score=100.94 Aligned_cols=127 Identities=20% Similarity=0.142 Sum_probs=70.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEee--cCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC--ADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE 177 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~--~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 177 (344)
+...|+++|.+++|||||+.+|.......|..-.... .|.. .+...++.+..-.... .
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~----~~E~~rg~Ti~~~~~~--~-------------- 70 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKA----PEEKARGITINTAHVE--Y-------------- 70 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCC----hHHHhcCeEEeeeEEE--E--------------
Confidence 3466999999999999999999976655443221111 1111 0111222222111100 1
Q ss_pred HHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch--hHHHHHHHHhccCCcCE-EEeecCCCCC
Q 019214 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQSVSVGA-VIVTKMDGHA 254 (344)
Q Consensus 178 ~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~--~~~~~~~~~~~~~~~~~-lVinK~D~~~ 254 (344)
...+..++||||||+. .+...+. .....+|.+++|+|+..+. ...+..........+.+ +++||+|...
T Consensus 71 --~~~~~~i~~iDtPG~~----~f~~~~~--~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~ 142 (396)
T PRK00049 71 --ETEKRHYAHVDCPGHA----DYVKNMI--TGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVD 142 (396)
T ss_pred --cCCCeEEEEEECCCHH----HHHHHHH--hhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcc
Confidence 1125678999999973 3333332 2234689999999998762 22223333222222333 5799999864
No 212
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.98 E-value=4.6e-09 Score=98.00 Aligned_cols=171 Identities=17% Similarity=0.212 Sum_probs=95.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHH-HHhh----ccc-CCcceeccCCCCCHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQ-LKQN----ATK-AKIPFYGSYTESDPVRIAVE 174 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~-l~~~----~~~-~~v~~~~~~~~~~~~~~~~~ 174 (344)
.++.+++|.-|+||||+++++... ..|++++|+-+|.-..+--.. +... .+. .|+ ..+....+....+.+
T Consensus 4 ipv~iltGFLGaGKTTll~~ll~~--~~~~riaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GC--iCCs~~~~l~~~l~~ 79 (318)
T PRK11537 4 IAVTLLTGFLGAGKTTLLRHILNE--QHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGC--ICCSRSNELEDALLD 79 (318)
T ss_pred cCEEEEEECCCCCHHHHHHHHHhc--ccCCcccccccCcCCccccHHHHhCcCceEEEECCCE--EEEccCchHHHHHHH
Confidence 468899999999999999999854 358899999887643332111 2111 111 111 112223333333333
Q ss_pred HHHHHHh--CCCCEEEEcCCCCCcchHHHHHHH---HHhhhhcCCcEEEEEEcCCcchhHHHHHHHHh-ccCCcCEEEee
Q 019214 175 GVETFKK--ENCDLIIVDTSGRHKQEAALFEEM---RQVSEATNPDLVIFVMDSSIGQAAFDQAQAFK-QSVSVGAVIVT 248 (344)
Q Consensus 175 ~l~~~~~--~~~d~vlIDT~G~~~~~~~~~~~l---~~~~~~~~~d~illvvda~~~~~~~~~~~~~~-~~~~~~~lVin 248 (344)
.+..... ..+|+|+|+|.|...+. .+.+.+ ..+.....-+.++.|+|+.......+....+. +....+.+|+|
T Consensus 80 l~~~~~~~~~~~d~IvIEttG~a~p~-~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~AD~Ivln 158 (318)
T PRK11537 80 LLDNLDKGNIQFDRLVIECTGMADPG-PIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLT 158 (318)
T ss_pred HHHHHhccCCCCCEEEEECCCccCHH-HHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhCCEEEEe
Confidence 3332222 15999999999998643 333232 11222223477999999975432221111111 11224689999
Q ss_pred cCCCCCChhhHHHHHHHh--CCCeEEEecC
Q 019214 249 KMDGHAKGGGALSAVAAT--KSPVIFIGTG 276 (344)
Q Consensus 249 K~D~~~~~~~~~~~~~~~--~~pv~~~~~g 276 (344)
|+|+......+...+... ..|+..+..|
T Consensus 159 K~Dl~~~~~~~~~~l~~lnp~a~i~~~~~~ 188 (318)
T PRK11537 159 KTDVAGEAEKLRERLARINARAPVYTVVHG 188 (318)
T ss_pred ccccCCHHHHHHHHHHHhCCCCEEEEeccC
Confidence 999987554444554443 3455555544
No 213
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.98 E-value=1.7e-08 Score=92.18 Aligned_cols=149 Identities=15% Similarity=0.183 Sum_probs=74.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeec---CcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHH
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA---DTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~---D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 178 (344)
+.|+++|.+|+|||||+++|......- .+..-+.. +......+ .+.....++.+..... .
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i-~~~g~v~~~~~~~~t~~D~---~~~e~~rg~si~~~~~-------------~ 65 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAI-REAGAVKARKSRKHATSDW---MEIEKQRGISVTSSVM-------------Q 65 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCc-ccCceecccccCCCccCCC---cHHHHhCCCCeEEEEE-------------E
Confidence 579999999999999999998542110 01111111 00000000 0000011111111000 1
Q ss_pred HHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH--HHHHHHHhccCCcCEEEeecCCCCCCh
Q 019214 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFKQSVSVGAVIVTKMDGHAKG 256 (344)
Q Consensus 179 ~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~--~~~~~~~~~~~~~~~lVinK~D~~~~~ 256 (344)
+...++.+.++||||...... +... ....+|.+++|+|++.+... ............+..+++||+|.....
T Consensus 66 ~~~~~~~i~liDTPG~~df~~----~~~~--~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~ 139 (267)
T cd04169 66 FEYRDCVINLLDTPGHEDFSE----DTYR--TLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRD 139 (267)
T ss_pred EeeCCEEEEEEECCCchHHHH----HHHH--HHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCCC
Confidence 112378889999999753221 1111 12357999999999876321 122222222223457889999985542
Q ss_pred -hhHHHHH-HHhCCCeEEE
Q 019214 257 -GGALSAV-AATKSPVIFI 273 (344)
Q Consensus 257 -~~~~~~~-~~~~~pv~~~ 273 (344)
...++.+ ..++.|+..+
T Consensus 140 ~~~~~~~l~~~l~~~~~~~ 158 (267)
T cd04169 140 PLELLDEIEEELGIDCTPL 158 (267)
T ss_pred HHHHHHHHHHHHCCCceeE
Confidence 2333333 3456655443
No 214
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.98 E-value=1.2e-09 Score=95.17 Aligned_cols=110 Identities=15% Similarity=0.025 Sum_probs=61.4
Q ss_pred CCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH---HHHHHh---c-cCCcCEEEeecCCCCCCh
Q 019214 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFK---Q-SVSVGAVIVTKMDGHAKG 256 (344)
Q Consensus 184 ~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~---~~~~~~---~-~~~~~~lVinK~D~~~~~ 256 (344)
..+.++||||..... .+.. .....+|.+++|+|++....... ....+. . ...+..+|+||+|.....
T Consensus 47 ~~l~i~D~~G~~~~~-----~~~~-~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~ 120 (198)
T cd04147 47 LTLDILDTSGSYSFP-----AMRK-LSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEE 120 (198)
T ss_pred EEEEEEECCCchhhh-----HHHH-HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccccc
Confidence 566799999975322 1211 12346899999999976532221 111111 1 224568899999986531
Q ss_pred hhHH-HHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCC
Q 019214 257 GGAL-SAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (344)
Q Consensus 257 ~~~~-~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~ 313 (344)
.... ...... .......+.+.+|+.+|.| ++++++++.+.+..
T Consensus 121 ~~v~~~~~~~~-------------~~~~~~~~~~~~Sa~~g~g-v~~l~~~l~~~~~~ 164 (198)
T cd04147 121 RQVPAKDALST-------------VELDWNCGFVETSAKDNEN-VLEVFKELLRQANL 164 (198)
T ss_pred ccccHHHHHHH-------------HHhhcCCcEEEecCCCCCC-HHHHHHHHHHHhhc
Confidence 1111 000000 0000112334588999999 99999999887643
No 215
>PLN03118 Rab family protein; Provisional
Probab=98.98 E-value=7.6e-10 Score=97.48 Aligned_cols=151 Identities=14% Similarity=0.147 Sum_probs=83.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceecc-CCCCCHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGS-YTESDPVRIAVEGVETF 179 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~-~~~~~~~~~~~~~l~~~ 179 (344)
...|+|+|.+||||||++++++ +..+.-.+. ..+..+... ....
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~------~~~~~~~~~----------------t~~~~~~~~~~~~~------------- 58 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFI------SSSVEDLAP----------------TIGVDFKIKQLTVG------------- 58 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHH------hCCCCCcCC----------------CceeEEEEEEEEEC-------------
Confidence 3579999999999999999998 433211110 011111000 0000
Q ss_pred HhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHHHH-------HHHhcc-CCcCEEEeecCC
Q 019214 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQA-------QAFKQS-VSVGAVIVTKMD 251 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~~~-------~~~~~~-~~~~~lVinK~D 251 (344)
...+.+.|+||||...... +.. .....+|.+++|+|.+......... ..+... ..+..+|.||+|
T Consensus 59 -~~~~~l~l~Dt~G~~~~~~-----~~~-~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~D 131 (211)
T PLN03118 59 -GKRLKLTIWDTAGQERFRT-----LTS-SYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVD 131 (211)
T ss_pred -CEEEEEEEEECCCchhhHH-----HHH-HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 0145678999999754221 111 1133679999999998653222211 111111 124478899999
Q ss_pred CCCChh----hHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 252 GHAKGG----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 252 ~~~~~~----~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
+..... .........+ .+.+.+|+.+|+| ++++++.|.+.+.
T Consensus 132 l~~~~~i~~~~~~~~~~~~~------------------~~~~e~SAk~~~~-v~~l~~~l~~~~~ 177 (211)
T PLN03118 132 RESERDVSREEGMALAKEHG------------------CLFLECSAKTREN-VEQCFEELALKIM 177 (211)
T ss_pred ccccCccCHHHHHHHHHHcC------------------CEEEEEeCCCCCC-HHHHHHHHHHHHH
Confidence 853211 1111111111 1234568889999 9999999887663
No 216
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.97 E-value=6e-10 Score=95.26 Aligned_cols=150 Identities=13% Similarity=0.033 Sum_probs=80.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
+.|+++|.+||||||+++++. +.+.. ... .+... ..+... +. .. .
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~------~~~~~-~~~---~~t~~---~~~~~~--~~----~~----------------~ 46 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFV------EGHFV-ESY---YPTIE---NTFSKI--IR----YK----------------G 46 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHH------hCCCc-ccc---Ccchh---hhEEEE--EE----EC----------------C
Confidence 468999999999999999998 43321 111 11000 000000 00 00 0
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHhc----cCCcCEEEeecCCCCC
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ----SVSVGAVIVTKMDGHA 254 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~~----~~~~~~lVinK~D~~~ 254 (344)
.++.+.++||||..... . +. -......+.++++.|.+..... ......+.. ...+..+|.||+|...
T Consensus 47 ~~~~~~l~D~~g~~~~~--~---~~-~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 120 (180)
T cd04137 47 QDYHLEIVDTAGQDEYS--I---LP-QKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHT 120 (180)
T ss_pred EEEEEEEEECCChHhhH--H---HH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhh
Confidence 14667899999974311 1 11 1112357888999998764221 111122211 1235688999999853
Q ss_pred Chh---hHHH-HHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 255 KGG---GALS-AVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 255 ~~~---~~~~-~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
... .... .....+ .+.+.+|+++|+| +.++++++.+.+
T Consensus 121 ~~~~~~~~~~~~~~~~~------------------~~~~~~Sa~~~~g-v~~l~~~l~~~~ 162 (180)
T cd04137 121 QRQVSTEEGKELAESWG------------------AAFLESSARENEN-VEEAFELLIEEI 162 (180)
T ss_pred cCccCHHHHHHHHHHcC------------------CeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 210 1111 111111 1234578889999 999999887654
No 217
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.97 E-value=2.2e-09 Score=109.57 Aligned_cols=165 Identities=20% Similarity=0.212 Sum_probs=90.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHH
Q 019214 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (344)
Q Consensus 99 ~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 178 (344)
.++++|+++|.+|+|||||+.+|. +..+..-.. ...+. .+..+......
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~------~~~~~~~e~------------~GiTq-~i~~~~v~~~~------------ 290 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIR------KTQIAQKEA------------GGITQ-KIGAYEVEFEY------------ 290 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHH------hccCccccC------------Ccccc-ccceEEEEEEe------------
Confidence 356789999999999999999997 333221000 00000 00000000000
Q ss_pred HHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc--hhHHHHHHHHhccCCcCEEEeecCCCCCC-
Q 019214 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QAAFDQAQAFKQSVSVGAVIVTKMDGHAK- 255 (344)
Q Consensus 179 ~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~--~~~~~~~~~~~~~~~~~~lVinK~D~~~~- 255 (344)
...++.+.|+||||... +. .++. .....+|.+++|+|+..+ ....+..........+.++++||+|....
T Consensus 291 -~~~~~kItfiDTPGhe~----F~-~mr~-rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~ 363 (742)
T CHL00189 291 -KDENQKIVFLDTPGHEA----FS-SMRS-RGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANAN 363 (742)
T ss_pred -cCCceEEEEEECCcHHH----HH-HHHH-HHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccC
Confidence 00157789999999742 11 1211 123458999999998765 22233333333222345788999998643
Q ss_pred hhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 256 ~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
.......+...+. -........+.+.+|+++|+| ++.|++.|....
T Consensus 364 ~e~v~~eL~~~~l---------l~e~~g~~vpvv~VSAktG~G-IdeLle~I~~l~ 409 (742)
T CHL00189 364 TERIKQQLAKYNL---------IPEKWGGDTPMIPISASQGTN-IDKLLETILLLA 409 (742)
T ss_pred HHHHHHHHHHhcc---------chHhhCCCceEEEEECCCCCC-HHHHHHhhhhhh
Confidence 2222233222110 000111123456789999999 999999887653
No 218
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.97 E-value=9.1e-10 Score=93.08 Aligned_cols=149 Identities=13% Similarity=0.055 Sum_probs=82.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceec--cCCCCCHHHHHHHHHHHH
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYG--SYTESDPVRIAVEGVETF 179 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~--~~~~~~~~~~~~~~l~~~ 179 (344)
..|+++|++||||||+++++. +.+.. +.+.+ ..+.++.. ....
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~------~~~f~----~~~~~-----------t~~~~~~~~~~~~~-------------- 48 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFS------EDSFN----PSFIS-----------TIGIDFKIRTIELD-------------- 48 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHh------hCcCC----ccccc-----------CccceEEEEEEEEC--------------
Confidence 569999999999999999998 43211 00000 01111100 0000
Q ss_pred HhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHH---HHHHHHhc---cCCcCEEEeecCCCC
Q 019214 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQ---SVSVGAVIVTKMDGH 253 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~---~~~~~~~~---~~~~~~lVinK~D~~ 253 (344)
...+.+.+.||||..... .+. ......+|.+++|.|++...... .....+.. ...+..+|.||+|+.
T Consensus 49 -~~~~~l~l~D~~g~~~~~-----~~~-~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~ 121 (167)
T cd01867 49 -GKKIKLQIWDTAGQERFR-----TIT-TAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDME 121 (167)
T ss_pred -CEEEEEEEEeCCchHHHH-----HHH-HHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 013567899999964211 111 11234689999999987653221 22222221 223457889999986
Q ss_pred CChh----hHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 254 AKGG----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 254 ~~~~----~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
.... .........+ .+.+.+|+.+|.| ++++++++.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~------------------~~~~~~Sa~~~~~-v~~~~~~i~~~~ 164 (167)
T cd01867 122 EKRVVSKEEGEALADEYG------------------IKFLETSAKANIN-VEEAFFTLAKDI 164 (167)
T ss_pred cccCCCHHHHHHHHHHcC------------------CEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 4311 1112222111 1235678889999 999998887654
No 219
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.96 E-value=2.8e-09 Score=103.82 Aligned_cols=67 Identities=19% Similarity=0.305 Sum_probs=39.7
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCc--ch--hHHHHHHHHhc-cCCcCEEEeecCCCCC
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSI--GQ--AAFDQAQAFKQ-SVSVGAVIVTKMDGHA 254 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~--~~--~~~~~~~~~~~-~~~~~~lVinK~D~~~ 254 (344)
.++.+.|+||||..... ..+ +.....+|.+++|+|++. +. ........... ..++..+++||+|...
T Consensus 82 ~~~~i~liDtpG~~~~~----~~~--~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~ 153 (425)
T PRK12317 82 DKYYFTIVDCPGHRDFV----KNM--ITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVN 153 (425)
T ss_pred CCeEEEEEECCCcccch----hhH--hhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEcccccc
Confidence 36788999999974322 122 112346899999999986 42 11122211111 1233467899999864
No 220
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.96 E-value=4.8e-10 Score=95.23 Aligned_cols=120 Identities=13% Similarity=0.081 Sum_probs=60.5
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH----HHHHHh--ccCCcCEEEeecCCCCCCh
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFK--QSVSVGAVIVTKMDGHAKG 256 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~----~~~~~~--~~~~~~~lVinK~D~~~~~ 256 (344)
.+.+.++||||..... .++. .....+|.+++|.|.+....... ....+. ....+..+|.||+|+....
T Consensus 47 ~~~~~i~Dt~G~~~~~-----~~~~-~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~ 120 (174)
T cd04135 47 QYLLGLYDTAGQEDYD-----RLRP-LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDP 120 (174)
T ss_pred EEEEEEEeCCCccccc-----cccc-ccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcCh
Confidence 4556799999975321 1111 12346789999999876532211 112221 1223457889999986543
Q ss_pred hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhh
Q 019214 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (344)
Q Consensus 257 ~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~ 310 (344)
............++. ...++....-....+.+.+|+++|+| ++++++.+.+.
T Consensus 121 ~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~e~Sa~~~~g-i~~~f~~~~~~ 172 (174)
T cd04135 121 KTLARLNDMKEKPVT-VEQGQKLAKEIGAHCYVECSALTQKG-LKTVFDEAILA 172 (174)
T ss_pred hhHHHHhhccCCCCC-HHHHHHHHHHcCCCEEEEecCCcCCC-HHHHHHHHHHH
Confidence 221111110010110 00111110000112345689999999 99999887654
No 221
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.96 E-value=1.1e-08 Score=86.36 Aligned_cols=148 Identities=14% Similarity=0.133 Sum_probs=81.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCccee--ccCCCCCHHHHHHHHHHHHH
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFY--GSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~--~~~~~~~~~~~~~~~l~~~~ 180 (344)
.|+++|++||||||+++++. +.+..-. +.+ ..+..+. .....
T Consensus 3 ki~i~G~~~~GKSsli~~l~------~~~~~~~----~~~-----------t~~~~~~~~~~~~~--------------- 46 (165)
T cd01865 3 KLLIIGNSSVGKTSFLFRYA------DDSFTSA----FVS-----------TVGIDFKVKTVFRN--------------- 46 (165)
T ss_pred EEEEECCCCCCHHHHHHHHh------cCCCCCC----CCC-----------ceeeEEEEEEEEEC---------------
Confidence 58999999999999999998 4332100 000 0011100 00000
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHhc---cCCcCEEEeecCCCCC
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ---SVSVGAVIVTKMDGHA 254 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~~---~~~~~~lVinK~D~~~ 254 (344)
...+.+.+.||||..... .+. ......+|.+++|+|.+..... .+....+.. ...+..+|.||+|+..
T Consensus 47 ~~~~~~~l~Dt~g~~~~~-----~~~-~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~ 120 (165)
T cd01865 47 DKRVKLQIWDTAGQERYR-----TIT-TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMED 120 (165)
T ss_pred CEEEEEEEEECCChHHHH-----HHH-HHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCc
Confidence 013567899999964211 111 1223468999999998754222 122222222 1234588899999854
Q ss_pred Ch----hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 255 KG----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 255 ~~----~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
.. ..........+. +.+.+|+++|.| ++++++.+.+.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~------------------~~~~~Sa~~~~g-v~~l~~~l~~~~ 162 (165)
T cd01865 121 ERVVSSERGRQLADQLGF------------------EFFEASAKENIN-VKQVFERLVDII 162 (165)
T ss_pred ccccCHHHHHHHHHHcCC------------------EEEEEECCCCCC-HHHHHHHHHHHH
Confidence 31 111122222221 234467889999 999999887654
No 222
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.96 E-value=5.6e-09 Score=88.05 Aligned_cols=103 Identities=16% Similarity=0.089 Sum_probs=58.2
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHH---HH---HHHHhc---cCCcCEEEeecCCCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQ---AQAFKQ---SVSVGAVIVTKMDGH 253 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~---~~---~~~~~~---~~~~~~lVinK~D~~ 253 (344)
.+.+.++||||..... .+.. .....+|.+++|.|.+...... .. ...+.. ...+..+|.||+|+.
T Consensus 48 ~~~l~i~Dt~G~~~~~-----~~~~-~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (165)
T cd04140 48 ICTLQITDTTGSHQFP-----AMQR-LSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDES 121 (165)
T ss_pred EEEEEEEECCCCCcch-----HHHH-HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccc
Confidence 4567899999985432 1111 1133578999999987653221 11 122211 123457899999985
Q ss_pred CChh----hHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhh
Q 019214 254 AKGG----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (344)
Q Consensus 254 ~~~~----~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~ 310 (344)
.... ........ ...+.+.+|+++|+| +++++++|.+.
T Consensus 122 ~~~~v~~~~~~~~~~~------------------~~~~~~e~SA~~g~~-v~~~f~~l~~~ 163 (165)
T cd04140 122 HKREVSSNEGAACATE------------------WNCAFMETSAKTNHN-VQELFQELLNL 163 (165)
T ss_pred ccCeecHHHHHHHHHH------------------hCCcEEEeecCCCCC-HHHHHHHHHhc
Confidence 4210 10111110 011234578999999 99999988654
No 223
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.96 E-value=1.7e-08 Score=85.04 Aligned_cols=104 Identities=14% Similarity=0.005 Sum_probs=58.4
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH---HHHHHhc---cCCcCEEEeecCCCCCCh
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ---SVSVGAVIVTKMDGHAKG 256 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~---~~~~~~~---~~~~~~lVinK~D~~~~~ 256 (344)
.+.+.++||||..... .+.. .....+|.+++|+|++....... ....+.. ...+..+|.||+|.....
T Consensus 50 ~~~~~i~D~~G~~~~~-----~~~~-~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~ 123 (166)
T cd01869 50 TIKLQIWDTAGQERFR-----TITS-SYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKR 123 (166)
T ss_pred EEEEEEEECCCcHhHH-----HHHH-HHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhccccc
Confidence 3567899999964211 1111 11346899999999986432222 2222221 123457889999975431
Q ss_pred h----hHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 257 G----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 257 ~----~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
. .........+. +.+.+|+.+|+| ++++++.|.+.+
T Consensus 124 ~~~~~~~~~~~~~~~~------------------~~~~~Sa~~~~~-v~~~~~~i~~~~ 163 (166)
T cd01869 124 VVDYSEAQEFADELGI------------------PFLETSAKNATN-VEQAFMTMAREI 163 (166)
T ss_pred CCCHHHHHHHHHHcCC------------------eEEEEECCCCcC-HHHHHHHHHHHH
Confidence 1 11122221121 234577788888 998888876643
No 224
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.95 E-value=9.6e-10 Score=93.08 Aligned_cols=151 Identities=13% Similarity=0.008 Sum_probs=81.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
..|+++|++||||||+++.+. +.+...... + .. ..+.....+.. ..
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~------~~~~~~~~~-~-t~--------~~~~~~~~~~~--~~---------------- 50 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFT------DKRFQPVHD-L-TI--------GVEFGARMITI--DG---------------- 50 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHH------cCCCCCCCC-C-cc--------ceeEEEEEEEE--CC----------------
Confidence 469999999999999999998 443321110 0 00 00000000000 00
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH---HHHHHhc---cCCcCEEEeecCCCCCC
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ---SVSVGAVIVTKMDGHAK 255 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~---~~~~~~~---~~~~~~lVinK~D~~~~ 255 (344)
....+.+.||||.... ..+.. .....+|.+++|+|++....... ....... ...+..+|.||+|....
T Consensus 51 ~~~~~~i~Dt~G~~~~-----~~~~~-~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 124 (168)
T cd01866 51 KQIKLQIWDTAGQESF-----RSITR-SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESR 124 (168)
T ss_pred EEEEEEEEECCCcHHH-----HHHHH-HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 1346789999996321 11111 12346899999999985432222 2222221 12345888999998632
Q ss_pred hh----hHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 256 GG----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 256 ~~----~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
.. .........+ .+.+.+|+..|+| ++++++.+.+.+
T Consensus 125 ~~~~~~~~~~~~~~~~------------------~~~~e~Sa~~~~~-i~~~~~~~~~~~ 165 (168)
T cd01866 125 REVSYEEGEAFAKEHG------------------LIFMETSAKTASN-VEEAFINTAKEI 165 (168)
T ss_pred cCCCHHHHHHHHHHcC------------------CEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 11 1112222111 1234578888999 999888776653
No 225
>PLN00223 ADP-ribosylation factor; Provisional
Probab=98.95 E-value=6.9e-09 Score=89.20 Aligned_cols=152 Identities=18% Similarity=0.132 Sum_probs=82.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
..|+++|.+||||||+++++.. |.-+ ...|. .+..+... ..
T Consensus 18 ~ki~ivG~~~~GKTsl~~~l~~-----~~~~---~~~pt--------------~g~~~~~~-----------------~~ 58 (181)
T PLN00223 18 MRILMVGLDAAGKTTILYKLKL-----GEIV---TTIPT--------------IGFNVETV-----------------EY 58 (181)
T ss_pred cEEEEECCCCCCHHHHHHHHcc-----CCCc---cccCC--------------cceeEEEE-----------------EE
Confidence 4599999999999999998861 2111 11000 01111000 01
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH---HHHHHhc----cCCcCEEEeecCCCCC
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ----SVSVGAVIVTKMDGHA 254 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~---~~~~~~~----~~~~~~lVinK~D~~~ 254 (344)
.+..+.+.||||..... .+. ......+|.+++|+|++......+ ....+.. ...+..+|.||+|...
T Consensus 59 ~~~~~~i~D~~Gq~~~~-----~~~-~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~ 132 (181)
T PLN00223 59 KNISFTVWDVGGQDKIR-----PLW-RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
T ss_pred CCEEEEEEECCCCHHHH-----HHH-HHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCC
Confidence 25678899999974211 111 112346899999999986432221 2222211 1234578899999854
Q ss_pred ChhhHHHHHHHhCCCeEEEecCCCCCcCcCCC-hHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFD-VKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 255 ~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~-~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
... ..+.....+ +..+.+-. ....+|+.+|+| +.+++++|.+.+
T Consensus 133 ~~~-~~~~~~~l~-----------l~~~~~~~~~~~~~Sa~~g~g-v~e~~~~l~~~~ 177 (181)
T PLN00223 133 AMN-AAEITDKLG-----------LHSLRQRHWYIQSTCATSGEG-LYEGLDWLSNNI 177 (181)
T ss_pred CCC-HHHHHHHhC-----------ccccCCCceEEEeccCCCCCC-HHHHHHHHHHHH
Confidence 321 111122112 11111110 122479999999 999999987654
No 226
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.95 E-value=3.8e-09 Score=88.68 Aligned_cols=103 Identities=19% Similarity=0.215 Sum_probs=59.0
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHH---HHHHHHhcc--CCcCEEEeecCCCCCChh
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQS--VSVGAVIVTKMDGHAKGG 257 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~---~~~~~~~~~--~~~~~lVinK~D~~~~~~ 257 (344)
.+.+.+.||||..... .+.. .....+|.+++|+|.+...... .....+... ..+.++|.||+|......
T Consensus 51 ~~~l~i~Dt~G~~~~~-----~~~~-~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 124 (164)
T cd04101 51 TVELFIFDSAGQELYS-----DMVS-NYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAE 124 (164)
T ss_pred EEEEEEEECCCHHHHH-----HHHH-HHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccC
Confidence 4678899999963221 1211 1134689999999998653221 222222221 245578899999854311
Q ss_pred --h-HH-HHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhh
Q 019214 258 --G-AL-SAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (344)
Q Consensus 258 --~-~~-~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~ 310 (344)
. .. ......+ .+.+.+|+.+|.| ++++++.+.+.
T Consensus 125 ~~~~~~~~~~~~~~------------------~~~~~~Sa~~~~g-i~~l~~~l~~~ 162 (164)
T cd04101 125 VTDAQAQAFAQANQ------------------LKFFKTSALRGVG-YEEPFESLARA 162 (164)
T ss_pred CCHHHHHHHHHHcC------------------CeEEEEeCCCCCC-hHHHHHHHHHH
Confidence 1 11 1111111 1234578889999 99999888764
No 227
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.95 E-value=3.4e-09 Score=91.82 Aligned_cols=105 Identities=11% Similarity=0.015 Sum_probs=59.5
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHH---hccCCcCEEEeecCCCCCCh
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAF---KQSVSVGAVIVTKMDGHAKG 256 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~---~~~~~~~~lVinK~D~~~~~ 256 (344)
.+.+.|+||||..... .+. ......+|.+++|+|++..... ......+ .....+..+|.||+|+....
T Consensus 49 ~~~~~i~Dt~G~~~~~-----~~~-~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~ 122 (191)
T cd04112 49 KVKLQIWDTAGQERFR-----SVT-HAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGER 122 (191)
T ss_pred EEEEEEEeCCCcHHHH-----Hhh-HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhcc
Confidence 3567899999963211 111 1113468999999999764322 1122222 22223457889999985321
Q ss_pred ----hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 257 ----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 257 ----~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
..........+ .+.+.+|+.+|+| ++++++.|.+.+.
T Consensus 123 ~~~~~~~~~l~~~~~------------------~~~~e~Sa~~~~~-v~~l~~~l~~~~~ 163 (191)
T cd04112 123 VVKREDGERLAKEYG------------------VPFMETSAKTGLN-VELAFTAVAKELK 163 (191)
T ss_pred ccCHHHHHHHHHHcC------------------CeEEEEeCCCCCC-HHHHHHHHHHHHH
Confidence 11112112111 1234568889999 9999999887653
No 228
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.94 E-value=6.2e-10 Score=98.74 Aligned_cols=65 Identities=25% Similarity=0.412 Sum_probs=38.8
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc-------h--hHHHHHHHHhc-cCCcCEEEeecCCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG-------Q--AAFDQAQAFKQ-SVSVGAVIVTKMDG 252 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~-------~--~~~~~~~~~~~-~~~~~~lVinK~D~ 252 (344)
++.+.++||||... +...+ +.....+|.+++|+|++.+ . ........... ..++..+++||+|.
T Consensus 76 ~~~i~liDtpG~~~----~~~~~--~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl 149 (219)
T cd01883 76 KYRFTILDAPGHRD----FVPNM--ITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDD 149 (219)
T ss_pred CeEEEEEECCChHH----HHHHH--HHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEcccc
Confidence 77889999999742 22222 2223468999999999863 1 11221111111 12344678999998
Q ss_pred C
Q 019214 253 H 253 (344)
Q Consensus 253 ~ 253 (344)
.
T Consensus 150 ~ 150 (219)
T cd01883 150 V 150 (219)
T ss_pred c
Confidence 7
No 229
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.93 E-value=2.2e-08 Score=84.16 Aligned_cols=150 Identities=15% Similarity=0.060 Sum_probs=80.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
..|+++|++||||||+++++. +.+.......+ .........+.. . .
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~------~~~~~~~~~~t----------~~~~~~~~~~~~--~----------------~ 49 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFT------RNEFNLDSKST----------IGVEFATRSIQI--D----------------G 49 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHh------cCCCCCCCCCc----------cceEEEEEEEEE--C----------------C
Confidence 458999999999999999998 54332111100 000000000000 0 0
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH---HHHHHhc---cCCcCEEEeecCCCCCC
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ---SVSVGAVIVTKMDGHAK 255 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~---~~~~~~~---~~~~~~lVinK~D~~~~ 255 (344)
..+.+.++||||..... .+.. .....++.+++|.|++....... ....+.. ...+..+|.||+|....
T Consensus 50 ~~~~~~l~D~~g~~~~~-----~~~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~ 123 (165)
T cd01868 50 KTIKAQIWDTAGQERYR-----AITS-AYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHL 123 (165)
T ss_pred EEEEEEEEeCCChHHHH-----HHHH-HHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 13567899999964211 1111 11235788999999985432221 2222222 12345778999998542
Q ss_pred hh----hHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhh
Q 019214 256 GG----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (344)
Q Consensus 256 ~~----~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~ 310 (344)
.. .........+ .+.+.+|++.|.| ++.+++.+.+.
T Consensus 124 ~~~~~~~~~~~~~~~~------------------~~~~~~Sa~~~~~-v~~l~~~l~~~ 163 (165)
T cd01868 124 RAVPTEEAKAFAEKNG------------------LSFIETSALDGTN-VEEAFKQLLTE 163 (165)
T ss_pred ccCCHHHHHHHHHHcC------------------CEEEEEECCCCCC-HHHHHHHHHHH
Confidence 11 1112211111 1234467888999 99999987654
No 230
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.93 E-value=2.5e-09 Score=107.64 Aligned_cols=160 Identities=16% Similarity=0.190 Sum_probs=86.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHhC
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 182 (344)
+|+++|.+|+||||++++|. |.. .|.+. .. ...++.+..... .+...
T Consensus 2 ~I~iiG~~d~GKTTLi~aLt------g~~-----~d~~~-------eE--~~rGiTid~~~~-------------~~~~~ 48 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALT------GIA-----ADRLP-------EE--KKRGMTIDLGFA-------------YFPLP 48 (581)
T ss_pred EEEEECCCCCCHHHHHHHHh------Ccc-----CcCCh-------hH--hcCCceEEeEEE-------------EEEeC
Confidence 68999999999999999998 643 12110 00 011111100000 00011
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch--hHHHHHHHHhc-cCCcCEEEeecCCCCCChhh-
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQ-SVSVGAVIVTKMDGHAKGGG- 258 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~--~~~~~~~~~~~-~~~~~~lVinK~D~~~~~~~- 258 (344)
++.+.|+||||.. .+...+ +.....+|.+++|+|++.+. ...+....+.. ..+..++|+||+|.......
T Consensus 49 ~~~v~~iDtPGhe----~f~~~~--~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~ 122 (581)
T TIGR00475 49 DYRLGFIDVPGHE----KFISNA--IAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIK 122 (581)
T ss_pred CEEEEEEECCCHH----HHHHHH--HhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHH
Confidence 4567899999963 222222 22344689999999998752 22222222221 22325788999998754211
Q ss_pred -HHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 259 -ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 259 -~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
..+.+...- ... .+....+.+.+|+++|+| ++++.+.+.+.++
T Consensus 123 ~~~~ei~~~l---------~~~-~~~~~~~ii~vSA~tG~G-I~eL~~~L~~l~~ 166 (581)
T TIGR00475 123 RTEMFMKQIL---------NSY-IFLKNAKIFKTSAKTGQG-IGELKKELKNLLE 166 (581)
T ss_pred HHHHHHHHHH---------HHh-CCCCCCcEEEEeCCCCCC-chhHHHHHHHHHH
Confidence 111111100 000 011123556788999999 9999888877654
No 231
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.93 E-value=1.3e-09 Score=92.02 Aligned_cols=103 Identities=11% Similarity=0.045 Sum_probs=57.9
Q ss_pred CCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHH---HHhccCCcCEEEeecCCCCCChh
Q 019214 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQ---AFKQSVSVGAVIVTKMDGHAKGG 257 (344)
Q Consensus 184 ~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~---~~~~~~~~~~lVinK~D~~~~~~ 257 (344)
+.+.++||||...... . .. .....+|.+++|+|++..... ..... .+.....+..+|.||+|......
T Consensus 56 ~~~~~~D~~g~~~~~~-~---~~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~ 129 (169)
T cd04114 56 IKLQIWDTAGQERFRS-I---TQ--SYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERRE 129 (169)
T ss_pred EEEEEEECCCcHHHHH-H---HH--HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccc
Confidence 4567899999742211 1 11 123468899999998765322 12222 22222234478899999854321
Q ss_pred ---hHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhh
Q 019214 258 ---GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (344)
Q Consensus 258 ---~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~ 310 (344)
........ .. ..+.+.+|+.+|.| +.++++.|.+.
T Consensus 130 i~~~~~~~~~~----------------~~-~~~~~~~Sa~~~~g-v~~l~~~i~~~ 167 (169)
T cd04114 130 VSQQRAEEFSD----------------AQ-DMYYLETSAKESDN-VEKLFLDLACR 167 (169)
T ss_pred cCHHHHHHHHH----------------Hc-CCeEEEeeCCCCCC-HHHHHHHHHHH
Confidence 11111111 00 12345678889999 99999998764
No 232
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.92 E-value=1e-08 Score=103.51 Aligned_cols=108 Identities=16% Similarity=0.175 Sum_probs=65.6
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH--HH-HHHHHhccCCcCEEEeecCCCCCC-hhh
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FD-QAQAFKQSVSVGAVIVTKMDGHAK-GGG 258 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~--~~-~~~~~~~~~~~~~lVinK~D~~~~-~~~ 258 (344)
.+.+.|+||||..... .++.. ....+|.+++|+|++.+... .. ......... +..+|+||+|.... ...
T Consensus 69 ~~~l~liDTPG~~dF~----~~v~~--~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~i-piIiViNKiDl~~~~~~~ 141 (595)
T TIGR01393 69 TYVLNLIDTPGHVDFS----YEVSR--SLAACEGALLLVDAAQGIEAQTLANVYLALENDL-EIIPVINKIDLPSADPER 141 (595)
T ss_pred EEEEEEEECCCcHHHH----HHHHH--HHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCC-CEEEEEECcCCCccCHHH
Confidence 3678899999986432 12221 23357999999999876322 22 122222233 45788999998532 122
Q ss_pred HHHHHH-HhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCC
Q 019214 259 ALSAVA-ATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (344)
Q Consensus 259 ~~~~~~-~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~ 313 (344)
....+. ..+. .+.+.+.+|+++|.| ++.|++.|.+.++.
T Consensus 142 ~~~el~~~lg~---------------~~~~vi~vSAktG~G-I~~Lle~I~~~lp~ 181 (595)
T TIGR01393 142 VKKEIEEVIGL---------------DASEAILASAKTGIG-IEEILEAIVKRVPP 181 (595)
T ss_pred HHHHHHHHhCC---------------CcceEEEeeccCCCC-HHHHHHHHHHhCCC
Confidence 222222 1121 112346789999999 99999999888764
No 233
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.92 E-value=5.2e-10 Score=94.51 Aligned_cols=118 Identities=14% Similarity=0.058 Sum_probs=59.1
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHHH----HHHHhcc--CCcCEEEeecCCCCCCh
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ----AQAFKQS--VSVGAVIVTKMDGHAKG 256 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~~----~~~~~~~--~~~~~lVinK~D~~~~~ 256 (344)
.+.+.++||||..... .+.. .....+|.+++|+|++........ ...+... ..+..+|.||+|.....
T Consensus 47 ~~~l~~~D~~g~~~~~-----~~~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 120 (171)
T cd00157 47 QVNLGLWDTAGQEEYD-----RLRP-LSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDE 120 (171)
T ss_pred EEEEEEEeCCCccccc-----ccch-hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhch
Confidence 4567899999975321 1111 112358999999999864322211 1122111 24558889999986543
Q ss_pred hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHh
Q 019214 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (344)
Q Consensus 257 ~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~ 309 (344)
...... ..+........+..........+.+.+|+++|+| ++++++.|.+
T Consensus 121 ~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~i~~ 170 (171)
T cd00157 121 NTLKKL--EKGKEPITPEEGEKLAKEIGAIGYMECSALTQEG-VKEVFEEAIR 170 (171)
T ss_pred hhhhhc--ccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCC-HHHHHHHHhh
Confidence 211000 0000000000000000001112446678899999 9999988764
No 234
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.92 E-value=6.6e-09 Score=88.74 Aligned_cols=103 Identities=11% Similarity=0.046 Sum_probs=59.3
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH---HHHHHhc----cCCcCEEEeecCCCCCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ----SVSVGAVIVTKMDGHAK 255 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~---~~~~~~~----~~~~~~lVinK~D~~~~ 255 (344)
.+.+.|+||||.... ..+.. .....+|.+++|.|++....... ....+.. ...+.++|.||+|....
T Consensus 62 ~~~~~i~Dt~G~~~~-----~~~~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~ 135 (180)
T cd04127 62 RIHLQLWDTAGQERF-----RSLTT-AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQ 135 (180)
T ss_pred EEEEEEEeCCChHHH-----HHHHH-HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhc
Confidence 356789999996421 11111 12346899999999986533222 2222221 12345788999998542
Q ss_pred h----hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhh
Q 019214 256 G----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (344)
Q Consensus 256 ~----~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~ 310 (344)
. ..........+. +.+.+|+++|.| ++++++.+.+.
T Consensus 136 ~~v~~~~~~~~~~~~~~------------------~~~e~Sak~~~~-v~~l~~~l~~~ 175 (180)
T cd04127 136 RQVSEEQAKALADKYGI------------------PYFETSAATGTN-VEKAVERLLDL 175 (180)
T ss_pred CccCHHHHHHHHHHcCC------------------eEEEEeCCCCCC-HHHHHHHHHHH
Confidence 1 111122222111 235678889999 99999888654
No 235
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.92 E-value=9.3e-10 Score=93.52 Aligned_cols=120 Identities=13% Similarity=0.066 Sum_probs=59.6
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH----HHHHHhc--cCCcCEEEeecCCCCCCh
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQ--SVSVGAVIVTKMDGHAKG 256 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~----~~~~~~~--~~~~~~lVinK~D~~~~~ 256 (344)
.+.+.++||||..... .+.. .....+|.+++|.|.+...+... ....+.. ...+..+|.||+|+....
T Consensus 48 ~~~l~i~Dt~G~~~~~-----~~~~-~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 121 (175)
T cd01870 48 QVELALWDTAGQEDYD-----RLRP-LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 121 (175)
T ss_pred EEEEEEEeCCCchhhh-----hccc-cccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccCh
Confidence 4567899999974211 1111 12346788888888775322111 1122221 123457889999975432
Q ss_pred hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhh
Q 019214 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (344)
Q Consensus 257 ~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~ 310 (344)
............++. ...|+....-....+.+.+|+++|.| ++++++.|.+.
T Consensus 122 ~~~~~i~~~~~~~v~-~~~~~~~~~~~~~~~~~~~Sa~~~~~-v~~lf~~l~~~ 173 (175)
T cd01870 122 HTRRELAKMKQEPVK-PEEGRDMANKIGAFGYMECSAKTKEG-VREVFEMATRA 173 (175)
T ss_pred hhhhhhhhccCCCcc-HHHHHHHHHHcCCcEEEEeccccCcC-HHHHHHHHHHH
Confidence 111111100000000 00001110000112346689999999 99999998764
No 236
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.91 E-value=4.5e-09 Score=88.93 Aligned_cols=104 Identities=10% Similarity=-0.020 Sum_probs=59.5
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH---HHHHHhcc--CCcCEEEeecCCCCCCh-
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQS--VSVGAVIVTKMDGHAKG- 256 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~---~~~~~~~~--~~~~~lVinK~D~~~~~- 256 (344)
.+.+.+.||||..... .+.. .....+|.+++|+|.+....... ....+... ..+..+|.||+|+....
T Consensus 48 ~~~l~i~Dt~G~~~~~-----~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~ 121 (166)
T cd00877 48 KIRFNVWDTAGQEKFG-----GLRD-GYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKV 121 (166)
T ss_pred EEEEEEEECCCChhhc-----cccH-HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccC
Confidence 4567899999974321 1111 11236899999999986533222 22222211 23457889999985321
Q ss_pred -hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 257 -GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 257 -~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
........ ....+.+.+|+++|+| ++++++++.+.+
T Consensus 122 ~~~~~~~~~------------------~~~~~~~e~Sa~~~~~-v~~~f~~l~~~~ 158 (166)
T cd00877 122 KAKQITFHR------------------KKNLQYYEISAKSNYN-FEKPFLWLARKL 158 (166)
T ss_pred CHHHHHHHH------------------HcCCEEEEEeCCCCCC-hHHHHHHHHHHH
Confidence 11111111 0112235578999999 999999987654
No 237
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.91 E-value=1.7e-09 Score=91.46 Aligned_cols=104 Identities=15% Similarity=0.028 Sum_probs=57.8
Q ss_pred CCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH---HHHHHhcc-------CCcCEEEeecCCCC
Q 019214 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQS-------VSVGAVIVTKMDGH 253 (344)
Q Consensus 184 ~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~---~~~~~~~~-------~~~~~lVinK~D~~ 253 (344)
+.+.++||||..... .+. ......+|.+++++|+........ ....+... ..+..+|.||+|..
T Consensus 49 ~~~~~~D~~g~~~~~-----~~~-~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (172)
T cd01862 49 VTLQIWDTAGQERFQ-----SLG-VAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLE 122 (172)
T ss_pred EEEEEEeCCChHHHH-----hHH-HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccc
Confidence 445689999964211 111 112345899999999876532211 11111111 23457889999996
Q ss_pred CCh---hhH-HHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 254 AKG---GGA-LSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 254 ~~~---~~~-~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
... ... .......+ ..+.+.+|+.+|.| ++.+++.|.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~-----------------~~~~~~~Sa~~~~g-v~~l~~~i~~~~ 166 (172)
T cd01862 123 EKRQVSTKKAQQWCQSNG-----------------NIPYFETSAKEAIN-VEQAFETIARKA 166 (172)
T ss_pred cccccCHHHHHHHHHHcC-----------------CceEEEEECCCCCC-HHHHHHHHHHHH
Confidence 311 111 12222111 12345578889999 999999887654
No 238
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=98.91 E-value=5.3e-09 Score=83.09 Aligned_cols=87 Identities=23% Similarity=0.206 Sum_probs=55.9
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcce---eccC-----CCCCHH-HHHHH
Q 019214 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPF---YGSY-----TESDPV-RIAVE 174 (344)
Q Consensus 104 i~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~---~~~~-----~~~~~~-~~~~~ 174 (344)
+++.|++|+||||++.+++..+++.|++|.++++|+. ...+.+..... +.+. .+.. ....+. ....+
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~~--~~~~~~~~~~~--~~~~~i~~g~~~~~~~g~~~~~n~~~~~ 77 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADPD--DLPERLSVEVG--EIKLLLVMGMGRPGGEGCYCPENALLNA 77 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCch--hhHHHHhhccC--CceEEEEecccccCCCCCEehhhHHHHH
Confidence 7899999999999999999999999999999999992 11222111111 1111 0100 000111 14455
Q ss_pred HHHHHHhCCCCEEEEcCCCC
Q 019214 175 GVETFKKENCDLIIVDTSGR 194 (344)
Q Consensus 175 ~l~~~~~~~~d~vlIDT~G~ 194 (344)
.+.++...++|++++||++-
T Consensus 78 ~l~~~~~~~~~~vivDt~ag 97 (116)
T cd02034 78 LLRHLVLTRDEQVVVDTEAG 97 (116)
T ss_pred HHHHeEccCCCEEEEecHHH
Confidence 56665566899999999654
No 239
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.91 E-value=2.3e-09 Score=93.58 Aligned_cols=151 Identities=19% Similarity=0.172 Sum_probs=81.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
..|+++|++||||||+++.+. +.+.. +.+.+ + .++.+....... ..
T Consensus 7 ~kivvvG~~~vGKTsli~~l~------~~~~~----~~~~~----------t-~~~~~~~~~~~~-------------~~ 52 (199)
T cd04110 7 FKLLIIGDSGVGKSSLLLRFA------DNTFS----GSYIT----------T-IGVDFKIRTVEI-------------NG 52 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHh------cCCCC----CCcCc----------c-ccceeEEEEEEE-------------CC
Confidence 569999999999999999998 43321 00000 0 011110000000 00
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH---HHHHHhcc--CCcCEEEeecCCCCCCh
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQS--VSVGAVIVTKMDGHAKG 256 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~---~~~~~~~~--~~~~~lVinK~D~~~~~ 256 (344)
..+.+.|+||||..... .+. ......++.+++|+|++....... ....+... ..+..+|.||+|+....
T Consensus 53 ~~~~l~l~D~~G~~~~~-----~~~-~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~ 126 (199)
T cd04110 53 ERVKLQIWDTAGQERFR-----TIT-STYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERK 126 (199)
T ss_pred EEEEEEEEeCCCchhHH-----HHH-HHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccccc
Confidence 13457799999964321 111 111345789999999986532222 22222221 23457889999986432
Q ss_pred h----hHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 257 G----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 257 ~----~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
. .........+ .+.+.+|+..|.| ++++++.|.+.+
T Consensus 127 ~~~~~~~~~~~~~~~------------------~~~~e~Sa~~~~g-i~~lf~~l~~~~ 166 (199)
T cd04110 127 VVETEDAYKFAGQMG------------------ISLFETSAKENIN-VEEMFNCITELV 166 (199)
T ss_pred ccCHHHHHHHHHHcC------------------CEEEEEECCCCcC-HHHHHHHHHHHH
Confidence 1 1111222111 1234567788999 999999887755
No 240
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.91 E-value=6e-09 Score=94.18 Aligned_cols=150 Identities=19% Similarity=0.278 Sum_probs=89.0
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhccc-CCcceeccCCCCCHHHHHHHHHHHHHhC
Q 019214 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATK-AKIPFYGSYTESDPVRIAVEGVETFKKE 182 (344)
Q Consensus 104 i~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~-~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 182 (344)
+.+||.||+||||++++|. ..+..|.+ .+++|. ..+.. ..+.
T Consensus 199 vGLVG~PNAGKSTLL~als------~AKpkVa~------------YaFTTL~P~iG~-v~yd------------------ 241 (366)
T KOG1489|consen 199 VGLVGFPNAGKSTLLNALS------RAKPKVAH------------YAFTTLRPHIGT-VNYD------------------ 241 (366)
T ss_pred cceecCCCCcHHHHHHHhh------ccCCcccc------------cceeeeccccce-eecc------------------
Confidence 6789999999999999999 55555444 234443 22221 1111
Q ss_pred CC-CEEEEcCCCCCcchH---HH-HHHHHHhhhhcCCcEEEEEEcCCcc-----hhHH----HHHHHHhcc--CCcCEEE
Q 019214 183 NC-DLIIVDTSGRHKQEA---AL-FEEMRQVSEATNPDLVIFVMDSSIG-----QAAF----DQAQAFKQS--VSVGAVI 246 (344)
Q Consensus 183 ~~-d~vlIDT~G~~~~~~---~~-~~~l~~~~~~~~~d~illvvda~~~-----~~~~----~~~~~~~~~--~~~~~lV 246 (344)
++ ++-+-|-||+..... .+ ...++-+. .++..+||+|.+.+ .+.+ ..++.|.+. .++..+|
T Consensus 242 df~q~tVADiPGiI~GAh~nkGlG~~FLrHiE---R~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liV 318 (366)
T KOG1489|consen 242 DFSQITVADIPGIIEGAHMNKGLGYKFLRHIE---RCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIV 318 (366)
T ss_pred ccceeEeccCccccccccccCcccHHHHHHHH---hhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEE
Confidence 22 366889999743321 11 11223222 36789999999876 1222 233344443 3567899
Q ss_pred eecCCCCCChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhh
Q 019214 247 VTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (344)
Q Consensus 247 inK~D~~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~ 310 (344)
.||+|........++.+. +++.. ..++.+|+++|+| ++.|++.+.+.
T Consensus 319 aNKiD~~eae~~~l~~L~------------~~lq~----~~V~pvsA~~~eg-l~~ll~~lr~~ 365 (366)
T KOG1489|consen 319 ANKIDLPEAEKNLLSSLA------------KRLQN----PHVVPVSAKSGEG-LEELLNGLREL 365 (366)
T ss_pred EeccCchhHHHHHHHHHH------------HHcCC----CcEEEeeeccccc-hHHHHHHHhhc
Confidence 999998533223333333 11110 1356789999999 99999888764
No 241
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.90 E-value=9.6e-09 Score=89.72 Aligned_cols=105 Identities=13% Similarity=0.015 Sum_probs=59.9
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHHH---HHHHhc-------cCCcCEEEeecCCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ---AQAFKQ-------SVSVGAVIVTKMDG 252 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~~---~~~~~~-------~~~~~~lVinK~D~ 252 (344)
.+.+.+.||||..... .+.. .....+|.+++|+|.+........ ...+.. ...|..+|.||+|+
T Consensus 49 ~~~l~l~Dt~G~~~~~-----~~~~-~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl 122 (201)
T cd04107 49 VVRLQLWDIAGQERFG-----GMTR-VYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDL 122 (201)
T ss_pred EEEEEEEECCCchhhh-----hhHH-HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCc
Confidence 4567899999974321 1111 113468999999998764322111 111111 12245888999998
Q ss_pred CCC----hhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 253 HAK----GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 253 ~~~----~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
... ...........+ ..+.+.+|+++|+| ++++++++.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~-----------------~~~~~e~Sak~~~~-v~e~f~~l~~~l 167 (201)
T cd04107 123 KKRLAKDGEQMDQFCKENG-----------------FIGWFETSAKEGIN-IEEAMRFLVKNI 167 (201)
T ss_pred ccccccCHHHHHHHHHHcC-----------------CceEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 521 111222222111 12334578889999 999999988765
No 242
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.90 E-value=1.8e-08 Score=97.17 Aligned_cols=128 Identities=22% Similarity=0.195 Sum_probs=70.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEee--cCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC--ADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE 177 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~--~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 177 (344)
+...|+++|..++|||||+.+|...+...|....... .|.. .+...+..+..-..+. .
T Consensus 11 ~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~----~~E~~rG~Ti~~~~~~--~-------------- 70 (394)
T TIGR00485 11 PHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNA----PEEKARGITINTAHVE--Y-------------- 70 (394)
T ss_pred ceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCC----HHHHhcCcceeeEEEE--E--------------
Confidence 3467999999999999999999866555444222111 1111 0111122222211110 0
Q ss_pred HHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch--hHHHHHHHHhc-cCCcCEEEeecCCCCC
Q 019214 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQ-SVSVGAVIVTKMDGHA 254 (344)
Q Consensus 178 ~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~--~~~~~~~~~~~-~~~~~~lVinK~D~~~ 254 (344)
...+..+.|+||||... +...+ +.....+|.+++|+|+..+. ...+.+..... ..+..++++||+|...
T Consensus 71 --~~~~~~~~liDtpGh~~----f~~~~--~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~ 142 (394)
T TIGR00485 71 --ETENRHYAHVDCPGHAD----YVKNM--ITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVD 142 (394)
T ss_pred --cCCCEEEEEEECCchHH----HHHHH--HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCC
Confidence 01256688999999742 32233 22234689999999998752 22233333222 2233235799999865
Q ss_pred C
Q 019214 255 K 255 (344)
Q Consensus 255 ~ 255 (344)
.
T Consensus 143 ~ 143 (394)
T TIGR00485 143 D 143 (394)
T ss_pred H
Confidence 3
No 243
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=98.90 E-value=3.6e-09 Score=98.24 Aligned_cols=39 Identities=33% Similarity=0.440 Sum_probs=37.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCc
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~ 139 (344)
.+++.|+|+.||||||+++++|..++..|+++.+|+.||
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDP 40 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDP 40 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 378999999999999999999999999999999999998
No 244
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.90 E-value=3.4e-09 Score=88.40 Aligned_cols=103 Identities=16% Similarity=0.115 Sum_probs=57.8
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH---HHHH---HhccCCcCEEEeecCCCCCCh
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQA---FKQSVSVGAVIVTKMDGHAKG 256 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~---~~~~---~~~~~~~~~lVinK~D~~~~~ 256 (344)
...+.++||||..... .+... ....+|.+++|+|.+....... .... +.....+..+|+||+|.....
T Consensus 48 ~~~~~~~D~~g~~~~~-----~~~~~-~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~ 121 (162)
T cd04123 48 RIDLAIWDTAGQERYH-----ALGPI-YYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQR 121 (162)
T ss_pred EEEEEEEECCchHHHH-----HhhHH-HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence 3457899999963211 12111 1236799999999876532211 1122 222223457889999986432
Q ss_pred h---h-HHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhh
Q 019214 257 G---G-ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (344)
Q Consensus 257 ~---~-~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~ 310 (344)
. . ........+. +.+.+|+.+|+| ++++++++...
T Consensus 122 ~~~~~~~~~~~~~~~~------------------~~~~~s~~~~~g-i~~~~~~l~~~ 160 (162)
T cd04123 122 VVSKSEAEEYAKSVGA------------------KHFETSAKTGKG-IEELFLSLAKR 160 (162)
T ss_pred CCCHHHHHHHHHHcCC------------------EEEEEeCCCCCC-HHHHHHHHHHH
Confidence 1 1 1122221121 224567889999 99999988654
No 245
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.89 E-value=2.7e-09 Score=94.31 Aligned_cols=104 Identities=14% Similarity=0.063 Sum_probs=58.6
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH---HHHHHhcc------CCcCEEEeecCCCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQS------VSVGAVIVTKMDGH 253 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~---~~~~~~~~------~~~~~lVinK~D~~ 253 (344)
.+.+.|.||||..... .+... ....+|.+++|+|.+....... ....+... ..+..+|.||+|+.
T Consensus 49 ~~~~~i~Dt~G~~~~~-----~l~~~-~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~ 122 (215)
T cd04109 49 NVTLQVWDIGGQSIGG-----KMLDK-YIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLE 122 (215)
T ss_pred EEEEEEEECCCcHHHH-----HHHHH-HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccc
Confidence 3567899999963221 11111 1346899999999886422211 12222211 12456789999985
Q ss_pred CChh----hHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 254 AKGG----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 254 ~~~~----~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
.... .........+ .+.+.+|+++|+| ++++++++.+.+
T Consensus 123 ~~~~v~~~~~~~~~~~~~------------------~~~~~iSAktg~g-v~~lf~~l~~~l 165 (215)
T cd04109 123 HNRTVKDDKHARFAQANG------------------MESCLVSAKTGDR-VNLLFQQLAAEL 165 (215)
T ss_pred cccccCHHHHHHHHHHcC------------------CEEEEEECCCCCC-HHHHHHHHHHHH
Confidence 3211 1111111111 1234578889999 999999887755
No 246
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.89 E-value=4.1e-09 Score=93.57 Aligned_cols=102 Identities=9% Similarity=0.003 Sum_probs=58.4
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhc-CCcEEEEEEcCCcchhH---HHHHHHHhc----cCCcCEEEeecCCCCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEAT-NPDLVIFVMDSSIGQAA---FDQAQAFKQ----SVSVGAVIVTKMDGHA 254 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~-~~d~illvvda~~~~~~---~~~~~~~~~----~~~~~~lVinK~D~~~ 254 (344)
.+.+.++||||... . +.... .. .+|.+++|+|++..... ......+.. ...+.++|.||+|+..
T Consensus 49 ~~~l~i~Dt~G~~~----~---~~~~~-~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~ 120 (221)
T cd04148 49 ESTLVVIDHWEQEM----W---TEDSC-MQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLAR 120 (221)
T ss_pred EEEEEEEeCCCcch----H---HHhHH-hhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccc
Confidence 46678999999861 1 11111 12 68999999999865322 122222222 1235588899999854
Q ss_pred Chh---h-HHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 255 KGG---G-ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 255 ~~~---~-~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
... . ........+ .+.+.+|+.+|.| ++++++.+...+
T Consensus 121 ~~~v~~~~~~~~a~~~~------------------~~~~e~SA~~~~g-v~~l~~~l~~~~ 162 (221)
T cd04148 121 SREVSVQEGRACAVVFD------------------CKFIETSAGLQHN-VDELLEGIVRQI 162 (221)
T ss_pred cceecHHHHHHHHHHcC------------------CeEEEecCCCCCC-HHHHHHHHHHHH
Confidence 311 0 111111111 1234578888888 888888887655
No 247
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.88 E-value=1.1e-08 Score=103.09 Aligned_cols=174 Identities=19% Similarity=0.166 Sum_probs=90.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHH--cCCccE--EeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHH
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQK--KGWKPA--LVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE 177 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~--~g~~v~--iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 177 (344)
+.|+|+|..++|||||+.+|...... ....+. +.|.++ .....++.+.....
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~-----------~ErerGiTI~~~~~------------- 57 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSND-----------LERERGITILAKNT------------- 57 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCch-----------HHHhCCccEEeeeE-------------
Confidence 46999999999999999999854321 111111 111100 01112222211100
Q ss_pred HHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch--hHHHHHHHHhccCCcCEEEeecCCCCC-
Q 019214 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQSVSVGAVIVTKMDGHA- 254 (344)
Q Consensus 178 ~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~--~~~~~~~~~~~~~~~~~lVinK~D~~~- 254 (344)
.+...++.+.||||||... +..++... ...+|.+++|+|++.+. ..............+..+|+||+|...
T Consensus 58 ~v~~~~~kinlIDTPGh~D----F~~ev~~~--l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a 131 (594)
T TIGR01394 58 AIRYNGTKINIVDTPGHAD----FGGEVERV--LGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSA 131 (594)
T ss_pred EEEECCEEEEEEECCCHHH----HHHHHHHH--HHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCc
Confidence 0012367889999999853 22233222 23579999999998763 222222222222223478899999853
Q ss_pred ChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCC----------CChhHHHHHHHhhCCC
Q 019214 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGM----------GDWSGFMDKIHEVVPM 313 (344)
Q Consensus 255 ~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~----------g~i~~l~~~i~~~~~~ 313 (344)
......+.+...-.. .|.. ++ ....|.+++|+..|. | +..|++.|.+.++.
T Consensus 132 ~~~~v~~ei~~l~~~-----~g~~-~e-~l~~pvl~~SA~~g~~~~~~~~~~~g-i~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 132 RPDEVVDEVFDLFAE-----LGAD-DE-QLDFPIVYASGRAGWASLDLDDPSDN-MAPLFDAIVRHVPA 192 (594)
T ss_pred CHHHHHHHHHHHHHh-----hccc-cc-cccCcEEechhhcCcccccCcccccC-HHHHHHHHHHhCCC
Confidence 222233222110000 0000 00 011244566776664 6 89999999888864
No 248
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.88 E-value=1.5e-09 Score=92.36 Aligned_cols=117 Identities=12% Similarity=0.064 Sum_probs=60.3
Q ss_pred CCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH----HHHHHhc--cCCcCEEEeecCCCCCChh
Q 019214 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQ--SVSVGAVIVTKMDGHAKGG 257 (344)
Q Consensus 184 ~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~----~~~~~~~--~~~~~~lVinK~D~~~~~~ 257 (344)
..+.++||||..... .+... ....+|.+++|.|.+....... ....+.. ...+..+|.||+|+....+
T Consensus 48 ~~~~i~Dt~G~~~~~-----~~~~~-~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 121 (173)
T cd04130 48 VRLQLCDTAGQDEFD-----KLRPL-CYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVN 121 (173)
T ss_pred EEEEEEECCCChhhc-----ccccc-ccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChh
Confidence 456799999974321 11111 2346899999999886432211 2222222 1234588899999875543
Q ss_pred hHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHH
Q 019214 258 GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIH 308 (344)
Q Consensus 258 ~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~ 308 (344)
...........++.. ..++....-....+.+.+|+++|.| ++++++.+.
T Consensus 122 ~~~~~~~~~~~~v~~-~~~~~~a~~~~~~~~~e~Sa~~~~~-v~~lf~~~~ 170 (173)
T cd04130 122 VLIQLARYGEKPVSQ-SRAKALAEKIGACEYIECSALTQKN-LKEVFDTAI 170 (173)
T ss_pred HHHHHhhcCCCCcCH-HHHHHHHHHhCCCeEEEEeCCCCCC-HHHHHHHHH
Confidence 322222111111100 0000000000112445688999999 999988764
No 249
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.87 E-value=4.5e-09 Score=92.77 Aligned_cols=65 Identities=17% Similarity=0.124 Sum_probs=40.0
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH--HHHHHHHhccCCcCEEEeecCCCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFKQSVSVGAVIVTKMDGH 253 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~--~~~~~~~~~~~~~~~lVinK~D~~ 253 (344)
.+.+.++||||........ ......+|.+++|+|++.+... ............+..+|+||+|..
T Consensus 70 ~~~i~iiDtpG~~~f~~~~------~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 70 SYLFNIIDTPGHVNFMDEV------AAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred EEEEEEEECCCCcchHHHH------HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 4678899999986432111 1223358999999999866322 122222222224558899999975
No 250
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.87 E-value=3.4e-09 Score=90.02 Aligned_cols=155 Identities=13% Similarity=0.085 Sum_probs=82.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
+...++++|.+||||||+++++. +.+.. .+.+.+.. .......... ..+
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~------~~~f~---~~~~~~T~-------~~~~~~~~~~-~~~-------------- 51 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFL------GRSFS---LNAYSPTI-------KPRYAVNTVE-VYG-------------- 51 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHh------CCCCC---cccCCCcc-------CcceEEEEEE-ECC--------------
Confidence 44679999999999999999998 44321 01111100 0000000000 000
Q ss_pred HhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH---HHHHHhc-cCCcCEEEeecCCCCCC
Q 019214 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ-SVSVGAVIVTKMDGHAK 255 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~---~~~~~~~-~~~~~~lVinK~D~~~~ 255 (344)
....+.+.||+|..... .+. -.....+|.+++|+|++....... ....+.. ...|..+|.||+|+...
T Consensus 52 --~~~~l~~~d~~g~~~~~-----~~~-~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~ 123 (169)
T cd01892 52 --QEKYLILREVGEDEVAI-----LLN-DAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQ 123 (169)
T ss_pred --eEEEEEEEecCCccccc-----ccc-hhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEccccccc
Confidence 12456677999864321 111 111246899999999976533222 2222211 12456889999998533
Q ss_pred hhh----HHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 256 GGG----ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 256 ~~~----~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
... ..+.... + ...+.+.+|+.+|+| ++++++.+.+.+
T Consensus 124 ~~~~~~~~~~~~~~----------------~-~~~~~~~~Sa~~~~~-v~~lf~~l~~~~ 165 (169)
T cd01892 124 QQRYEVQPDEFCRK----------------L-GLPPPLHFSSKLGDS-SNELFTKLATAA 165 (169)
T ss_pred ccccccCHHHHHHH----------------c-CCCCCEEEEeccCcc-HHHHHHHHHHHh
Confidence 110 0111111 0 111225678899999 999999887754
No 251
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.87 E-value=1.6e-08 Score=102.22 Aligned_cols=159 Identities=17% Similarity=0.190 Sum_probs=87.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHhC
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 182 (344)
+|+++|.+++||||++++|. |.+ .|.+.. ....++.+...+.... ...
T Consensus 2 ii~~~GhvdhGKTtLi~aLt------g~~-----~dr~~e---------E~~rGiTI~l~~~~~~------------~~~ 49 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAIT------GVN-----ADRLPE---------EKKRGMTIDLGYAYWP------------QPD 49 (614)
T ss_pred EEEEECCCCCCHHHHHHHHh------CCC-----Cccchh---------cccCCceEEeeeEEEe------------cCC
Confidence 68999999999999999998 642 222110 0011111110000000 001
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch--hHHHHHHHHhcc-CCcCEEEeecCCCCCChh--
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQS-VSVGAVIVTKMDGHAKGG-- 257 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~--~~~~~~~~~~~~-~~~~~lVinK~D~~~~~~-- 257 (344)
+..+.||||||.. .+...+ +.....+|.+++|+|+..+. ...+.+...... .+..++|+||+|......
T Consensus 50 g~~i~~IDtPGhe----~fi~~m--~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~ 123 (614)
T PRK10512 50 GRVLGFIDVPGHE----KFLSNM--LAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIA 123 (614)
T ss_pred CcEEEEEECCCHH----HHHHHH--HHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHH
Confidence 3446799999973 233333 22234689999999998752 222223322221 222358999999865321
Q ss_pred hHHHHHHHhCCCeEEEecCCCCCcC-cCCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 258 GALSAVAATKSPVIFIGTGEHMDEF-EVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 258 ~~~~~~~~~~~pv~~~~~g~~~~~l-~~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
...+.+... +... ....+.+.+|+.+|.| ++.|.+.|.+...
T Consensus 124 ~v~~ei~~~------------l~~~~~~~~~ii~VSA~tG~g-I~~L~~~L~~~~~ 166 (614)
T PRK10512 124 EVRRQVKAV------------LREYGFAEAKLFVTAATEGRG-IDALREHLLQLPE 166 (614)
T ss_pred HHHHHHHHH------------HHhcCCCCCcEEEEeCCCCCC-CHHHHHHHHHhhc
Confidence 111111110 0000 0123456789999999 9999999987654
No 252
>PLN03127 Elongation factor Tu; Provisional
Probab=98.87 E-value=2.7e-08 Score=97.11 Aligned_cols=127 Identities=19% Similarity=0.139 Sum_probs=72.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEee--cCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC--ADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE 177 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~--~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 177 (344)
+...|+++|..++|||||+++|.....+.|....... +|... +.-.++.++.-.... ..
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~----~E~~rGiTi~~~~~~--~~------------- 120 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAP----EEKARGITIATAHVE--YE------------- 120 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCCh----hHhhcCceeeeeEEE--Ec-------------
Confidence 3467999999999999999999876655555433221 22111 111222222211111 11
Q ss_pred HHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch--hHHHHHHHHhccCCc-CEEEeecCCCCC
Q 019214 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQSVSV-GAVIVTKMDGHA 254 (344)
Q Consensus 178 ~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~--~~~~~~~~~~~~~~~-~~lVinK~D~~~ 254 (344)
..+..++||||||+.. ++..+.. ....+|.+++|+|+..+. ...+.+........+ .++++||+|...
T Consensus 121 ---~~~~~i~~iDtPGh~~----f~~~~~~--g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~ 191 (447)
T PLN03127 121 ---TAKRHYAHVDCPGHAD----YVKNMIT--GAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVD 191 (447)
T ss_pred ---CCCeEEEEEECCCccc----hHHHHHH--HHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCC
Confidence 1256789999999853 3333322 223589999999998652 222333332222222 256799999875
No 253
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.87 E-value=3.4e-09 Score=89.09 Aligned_cols=104 Identities=14% Similarity=0.064 Sum_probs=58.1
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchh---HHHHHHHHh---c-cCCcCEEEeecCCCCCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQAQAFK---Q-SVSVGAVIVTKMDGHAK 255 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~---~~~~~~~~~---~-~~~~~~lVinK~D~~~~ 255 (344)
.+.+.+.||||..... . +... ....+|.+++|.|.+.... .......+. . ...|..+|.||+|+...
T Consensus 48 ~~~l~i~Dt~G~~~~~-~----~~~~-~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 121 (164)
T cd04175 48 QCMLEILDTAGTEQFT-A----MRDL-YMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 121 (164)
T ss_pred EEEEEEEECCCcccch-h----HHHH-HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhc
Confidence 4556789999975322 1 1111 1235788999999865422 112222221 1 12345888999998643
Q ss_pred hh---hH-HHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 256 GG---GA-LSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 256 ~~---~~-~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
.. .. .......+ .+.+.+|++.|.| ++++++++.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~------------------~~~~~~Sa~~~~~-v~~~~~~l~~~l 162 (164)
T cd04175 122 RVVGKEQGQNLARQWG------------------CAFLETSAKAKIN-VNEIFYDLVRQI 162 (164)
T ss_pred cEEcHHHHHHHHHHhC------------------CEEEEeeCCCCCC-HHHHHHHHHHHh
Confidence 11 11 11111111 1335678889999 999999887643
No 254
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.86 E-value=2.5e-08 Score=92.82 Aligned_cols=149 Identities=17% Similarity=0.197 Sum_probs=86.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhH--HHHHhhc----cc-CCcceeccCCCCCHHHHHHH
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAF--DQLKQNA----TK-AKIPFYGSYTESDPVRIAVE 174 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~--~~l~~~~----~~-~~v~~~~~~~~~~~~~~~~~ 174 (344)
++.++.|.-|+||||++++|..... |++++|+-++.--.+-- ..+.... +. .|+ +.+.-..+.......
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~--g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGC--ICCT~r~dl~~~~~~ 77 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRD--GKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGC--ICCTVRDDLLPALER 77 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccC--CCcEEEEEecCccccccCCCccccCCccEEEeCCce--EEEeccchhHHHHHH
Confidence 4788899999999999999997655 89999877654221110 0011111 11 111 111112244444433
Q ss_pred HHHHHHhCCCCEEEEcCCCCCcchHHHHHHHH--HhhhhcCCcEEEEEEcCCcchhHHH-HHHHHhccC-CcCEEEeecC
Q 019214 175 GVETFKKENCDLIIVDTSGRHKQEAALFEEMR--QVSEATNPDLVIFVMDSSIGQAAFD-QAQAFKQSV-SVGAVIVTKM 250 (344)
Q Consensus 175 ~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~--~~~~~~~~d~illvvda~~~~~~~~-~~~~~~~~~-~~~~lVinK~ 250 (344)
.. . +.+.+|+++|.|.|+..+..-....+. .+.....-|.++-|+|+........ ....+..++ -.+.+|+||.
T Consensus 78 L~-~-~~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD~ivlNK~ 155 (323)
T COG0523 78 LL-R-RRDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFADVIVLNKT 155 (323)
T ss_pred HH-h-ccCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhCcEEEEecc
Confidence 33 3 345699999999999876432211111 1222334577999999987643333 233333332 2468899999
Q ss_pred CCCCCh
Q 019214 251 DGHAKG 256 (344)
Q Consensus 251 D~~~~~ 256 (344)
|+....
T Consensus 156 Dlv~~~ 161 (323)
T COG0523 156 DLVDAE 161 (323)
T ss_pred cCCCHH
Confidence 998765
No 255
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.86 E-value=1.3e-08 Score=87.53 Aligned_cols=106 Identities=12% Similarity=0.014 Sum_probs=60.4
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHHH----HHHHhc--cCCcCEEEeecCCCCCCh
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ----AQAFKQ--SVSVGAVIVTKMDGHAKG 256 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~~----~~~~~~--~~~~~~lVinK~D~~~~~ 256 (344)
.+.+.+.||||..... .+... ....+|.+++|.|.+........ ...+.. ...|..+|.||.|+....
T Consensus 48 ~~~l~i~Dt~G~~~~~-----~~~~~-~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 121 (187)
T cd04132 48 IIELALWDTAGQEEYD-----RLRPL-SYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDK 121 (187)
T ss_pred EEEEEEEECCCchhHH-----HHHHH-hCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCc
Confidence 3567899999964211 12111 23468999999998764322211 111211 123457889999985421
Q ss_pred --------hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 257 --------GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 257 --------~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
..........+ ..+.+.+|+++|+| ++++++.+.+.+.
T Consensus 122 ~~~~~v~~~~~~~~~~~~~-----------------~~~~~e~Sa~~~~~-v~~~f~~l~~~~~ 167 (187)
T cd04132 122 NLDRKVTPAQAESVAKKQG-----------------AFAYLECSAKTMEN-VEEVFDTAIEEAL 167 (187)
T ss_pred cccCCcCHHHHHHHHHHcC-----------------CcEEEEccCCCCCC-HHHHHHHHHHHHH
Confidence 11111111111 11335678899999 9999999887653
No 256
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.86 E-value=9.9e-09 Score=88.84 Aligned_cols=103 Identities=17% Similarity=0.032 Sum_probs=57.6
Q ss_pred CCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHhcc--CCcCEEEeecCCCCCChh-
Q 019214 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQS--VSVGAVIVTKMDGHAKGG- 257 (344)
Q Consensus 184 ~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~~~--~~~~~lVinK~D~~~~~~- 257 (344)
+.+.++||||..... .+.. .....+|.+++|+|.+..... ......+... ..+..+|.||+|......
T Consensus 50 ~~l~i~D~~G~~~~~-----~~~~-~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~ 123 (193)
T cd04118 50 VTLGIWDTAGSERYE-----AMSR-IYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRS 123 (193)
T ss_pred EEEEEEECCCchhhh-----hhhH-hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccc
Confidence 445688999974321 1111 112368999999998754222 1222222221 234578999999753210
Q ss_pred -------hHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 258 -------GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 258 -------~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
.........+ .+.+.+|+.+|+| ++.+++.+.+.+
T Consensus 124 ~~~v~~~~~~~~~~~~~------------------~~~~~~Sa~~~~g-v~~l~~~i~~~~ 165 (193)
T cd04118 124 LRQVDFHDVQDFADEIK------------------AQHFETSSKTGQN-VDELFQKVAEDF 165 (193)
T ss_pred cCccCHHHHHHHHHHcC------------------CeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 0011111111 1234568889999 999999988755
No 257
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.86 E-value=2.1e-08 Score=101.35 Aligned_cols=109 Identities=18% Similarity=0.161 Sum_probs=65.7
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH--HHHHHHHhccCCcCEEEeecCCCCCC-hhhH
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFKQSVSVGAVIVTKMDGHAK-GGGA 259 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~--~~~~~~~~~~~~~~~lVinK~D~~~~-~~~~ 259 (344)
++.+.|+||||...... ++... ...+|.+++|+|++.+... ............+..+|+||+|.... ....
T Consensus 73 ~~~lnLiDTPGh~dF~~----~v~~s--l~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v 146 (600)
T PRK05433 73 TYILNLIDTPGHVDFSY----EVSRS--LAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERV 146 (600)
T ss_pred cEEEEEEECCCcHHHHH----HHHHH--HHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHH
Confidence 56788999999864322 22221 2357999999999876322 11222122222235788999998543 2222
Q ss_pred HHHHHH-hCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCC
Q 019214 260 LSAVAA-TKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (344)
Q Consensus 260 ~~~~~~-~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~ 313 (344)
...+.. .+.+ ....+.+|+++|.| ++.|++.|.+.++.
T Consensus 147 ~~ei~~~lg~~---------------~~~vi~iSAktG~G-I~~Ll~~I~~~lp~ 185 (600)
T PRK05433 147 KQEIEDVIGID---------------ASDAVLVSAKTGIG-IEEVLEAIVERIPP 185 (600)
T ss_pred HHHHHHHhCCC---------------cceEEEEecCCCCC-HHHHHHHHHHhCcc
Confidence 222221 1211 12246789999999 99999999888764
No 258
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.85 E-value=4.5e-09 Score=87.99 Aligned_cols=102 Identities=12% Similarity=0.071 Sum_probs=57.0
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHH---HHHHHHhc--cCCcCEEEeecCCCCCChh
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQ--SVSVGAVIVTKMDGHAKGG 257 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~---~~~~~~~~--~~~~~~lVinK~D~~~~~~ 257 (344)
...+.++||||..... .+.. .....+|.+++|.|++...... .....+.. ...+..+|.||+|......
T Consensus 50 ~~~~~i~D~~G~~~~~-----~~~~-~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~ 123 (162)
T cd04106 50 DVRLMLWDTAGQEEFD-----AITK-AYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAV 123 (162)
T ss_pred EEEEEEeeCCchHHHH-----HhHH-HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccC
Confidence 4678899999963211 1111 1134689999999987643221 12222221 1234578899999854321
Q ss_pred ----hHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHh
Q 019214 258 ----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (344)
Q Consensus 258 ----~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~ 309 (344)
.........+. +.+.+|+..|+| ++++++.|.+
T Consensus 124 v~~~~~~~~~~~~~~------------------~~~~~Sa~~~~~-v~~l~~~l~~ 160 (162)
T cd04106 124 ITNEEAEALAKRLQL------------------PLFRTSVKDDFN-VTELFEYLAE 160 (162)
T ss_pred CCHHHHHHHHHHcCC------------------eEEEEECCCCCC-HHHHHHHHHH
Confidence 11122222222 233466778888 8888888764
No 259
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=98.85 E-value=2.6e-08 Score=93.42 Aligned_cols=120 Identities=33% Similarity=0.391 Sum_probs=76.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCc-----chh------------HHHHHhhcccCCcceec
Q 019214 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR-----AGA------------FDQLKQNATKAKIPFYG 161 (344)
Q Consensus 99 ~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~-----~~~------------~~~l~~~~~~~~v~~~~ 161 (344)
+...+++++||.+|||||+++-|+..+..+|++++++|.|+-. |+. ..++.++... +.+
T Consensus 71 ~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~ei~pPg~ISL~~~~s~~~~L~~l~~~~~~----FvG 146 (398)
T COG1341 71 GKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADVGQSEIGPPGFISLAFPESPVISLSELEPFTLY----FVG 146 (398)
T ss_pred cCCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCCCCCcccCCCceEEeecccCCCCCHHHcCccceE----EEe
Confidence 4557899999999999999999999999999999999999722 221 1222222221 122
Q ss_pred cCCCC-CHHHHH---HHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCC
Q 019214 162 SYTES-DPVRIA---VEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSS 224 (344)
Q Consensus 162 ~~~~~-~~~~~~---~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~ 224 (344)
..++. .+...+ ......++. ..|+++|||+|.-.... -++..+.+.....||.++++=++.
T Consensus 147 ~isP~~~~~~~i~~v~rL~~~a~~-~~~~ilIdT~GWi~G~~-g~elk~~li~~ikP~~Ii~l~~~~ 211 (398)
T COG1341 147 SISPQGFPGRYIAGVARLVDLAKK-EADFILIDTDGWIKGWG-GLELKRALIDAIKPDLIIALERAN 211 (398)
T ss_pred ccCCCCChHHHHHHHHHHHHHhhc-cCCEEEEcCCCceeCch-HHHHHHHHHhhcCCCEEEEecccc
Confidence 22322 222222 222333333 37999999999754421 222344566677888888776664
No 260
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.85 E-value=2e-08 Score=99.62 Aligned_cols=118 Identities=17% Similarity=0.250 Sum_probs=68.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
..|+++|++||||||++|.|. |.++..++. +++ .++.. .......
T Consensus 119 lrIvLVGKTGVGKSSLINSIL------Gekvf~vss--~~~--------~TTr~-~ei~~~i------------------ 163 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIF------GEVKFSTDA--FGM--------GTTSV-QEIEGLV------------------ 163 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHh------ccccccccC--CCC--------CceEE-EEEEEEE------------------
Confidence 579999999999999999999 887765543 111 12211 1111111
Q ss_pred CCCCEEEEcCCCCCcchH------HHHHHHHHhhhhcCCcEEEEEEcCCcc-h--hHHHHHHHHhc-----cCCcCEEEe
Q 019214 182 ENCDLIIVDTSGRHKQEA------ALFEEMRQVSEATNPDLVIFVMDSSIG-Q--AAFDQAQAFKQ-----SVSVGAVIV 247 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~------~~~~~l~~~~~~~~~d~illvvda~~~-~--~~~~~~~~~~~-----~~~~~~lVi 247 (344)
.+..+.+|||||+..... .....+........+|.+++|...... . .....++.+.. ...-.++|+
T Consensus 164 dG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVF 243 (763)
T TIGR00993 164 QGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTL 243 (763)
T ss_pred CCceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEE
Confidence 156789999999975421 122222222233357888888865422 2 22222332221 123458899
Q ss_pred ecCCCCC
Q 019214 248 TKMDGHA 254 (344)
Q Consensus 248 nK~D~~~ 254 (344)
|++|...
T Consensus 244 ThgD~lp 250 (763)
T TIGR00993 244 THAASAP 250 (763)
T ss_pred eCCccCC
Confidence 9999975
No 261
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.85 E-value=5.2e-09 Score=90.58 Aligned_cols=103 Identities=11% Similarity=0.023 Sum_probs=57.8
Q ss_pred CCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHh---c---cCCcCEEEeecCCCCC
Q 019214 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFK---Q---SVSVGAVIVTKMDGHA 254 (344)
Q Consensus 184 ~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~---~---~~~~~~lVinK~D~~~ 254 (344)
+.+.|+||||..... .+.. .....+|.+++|.|.+..... ......+. . ...+..+|.||+|+..
T Consensus 47 ~~l~i~Dt~G~~~~~-----~~~~-~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~ 120 (190)
T cd04144 47 CMLEVLDTAGQEEYT-----ALRD-QWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY 120 (190)
T ss_pred EEEEEEECCCchhhH-----HHHH-HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccc
Confidence 456789999974321 1111 113357999999998765321 12222221 1 1234577899999853
Q ss_pred Chh----hHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 255 KGG----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 255 ~~~----~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
... .........+ .+.+.+|+++|.| ++++++.+.+.+
T Consensus 121 ~~~v~~~~~~~~~~~~~------------------~~~~e~SAk~~~~-v~~l~~~l~~~l 162 (190)
T cd04144 121 EREVSTEEGAALARRLG------------------CEFIEASAKTNVN-VERAFYTLVRAL 162 (190)
T ss_pred cCccCHHHHHHHHHHhC------------------CEEEEecCCCCCC-HHHHHHHHHHHH
Confidence 211 1111111111 1234578889999 999999987754
No 262
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.84 E-value=2.8e-09 Score=89.99 Aligned_cols=103 Identities=16% Similarity=-0.005 Sum_probs=57.4
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHH---HHHHHH---hccCCcCEEEeecCCCCCCh
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAF---KQSVSVGAVIVTKMDGHAKG 256 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~---~~~~~~---~~~~~~~~lVinK~D~~~~~ 256 (344)
.+.+.+.||||..... .+. ......+|.+++|.|.+...... ...... .....+..+|.||+|+....
T Consensus 50 ~~~l~i~Dt~G~~~~~-----~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~ 123 (166)
T cd04122 50 KIKLQIWDTAGQERFR-----AVT-RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQR 123 (166)
T ss_pred EEEEEEEECCCcHHHH-----HHH-HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence 4567899999964211 111 11234689999999998643221 222222 11223457889999985431
Q ss_pred ----hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhh
Q 019214 257 ----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (344)
Q Consensus 257 ----~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~ 310 (344)
..........+ .+.+.+|+++|+| ++++++.+.+.
T Consensus 124 ~~~~~~~~~~~~~~~------------------~~~~e~Sa~~~~~-i~e~f~~l~~~ 162 (166)
T cd04122 124 DVTYEEAKQFADENG------------------LLFLECSAKTGEN-VEDAFLETAKK 162 (166)
T ss_pred CcCHHHHHHHHHHcC------------------CEEEEEECCCCCC-HHHHHHHHHHH
Confidence 11112222111 1334567888999 88887776543
No 263
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.84 E-value=4.3e-09 Score=90.82 Aligned_cols=150 Identities=13% Similarity=0.056 Sum_probs=79.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHhC
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 182 (344)
.|+++|.+||||||+++++. +.+.... .++ ..+.......+. .. ..
T Consensus 2 ki~v~G~~~vGKSsli~~~~------~~~~~~~-~~~----------t~~~~~~~~~~~-~~----------------~~ 47 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFT------EDEFSES-TKS----------TIGVDFKIKTVY-IE----------------NK 47 (188)
T ss_pred EEEEECCCCCCHHHHHHHHh------cCCCCCC-CCC----------ceeeEEEEEEEE-EC----------------CE
Confidence 48999999999999999998 4432110 000 000000000000 00 01
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH---HHHHHh---ccCCcCEEEeecCCCCCCh
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFK---QSVSVGAVIVTKMDGHAKG 256 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~---~~~~~~---~~~~~~~lVinK~D~~~~~ 256 (344)
.+.+.+.||||..... .+. ......+|.+++|+|.+....... ....+. ....+..+|.||.|.....
T Consensus 48 ~~~~~i~Dt~g~~~~~-----~~~-~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~ 121 (188)
T cd04125 48 IIKLQIWDTNGQERFR-----SLN-NSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNK 121 (188)
T ss_pred EEEEEEEECCCcHHHH-----hhH-HHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccc
Confidence 3566799999964211 111 112346899999999976532222 122222 2223457889999986321
Q ss_pred ----hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 257 ----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 257 ----~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
..........+. +.+.+|+.+|.| ++++++.+.+.+
T Consensus 122 ~v~~~~~~~~~~~~~~------------------~~~evSa~~~~~-i~~~f~~l~~~~ 161 (188)
T cd04125 122 VVDSNIAKSFCDSLNI------------------PFFETSAKQSIN-VEEAFILLVKLI 161 (188)
T ss_pred cCCHHHHHHHHHHcCC------------------eEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 111111121121 234467778888 888888876654
No 264
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.84 E-value=4.6e-09 Score=101.62 Aligned_cols=66 Identities=21% Similarity=0.286 Sum_probs=40.0
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchh--HHHHHHHHhc-cCCcCEEEeecCCCCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAFKQ-SVSVGAVIVTKMDGHA 254 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~--~~~~~~~~~~-~~~~~~lVinK~D~~~ 254 (344)
+..+.||||||.. .+...+.. ....+|.+++|+|+..+.. ..+....... ..+..++++||+|...
T Consensus 79 ~~~~~liDtPGh~----~f~~~~~~--~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~ 147 (406)
T TIGR02034 79 KRKFIVADTPGHE----QYTRNMAT--GASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVD 147 (406)
T ss_pred CeEEEEEeCCCHH----HHHHHHHH--HHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEeccccc
Confidence 6678999999964 23333322 2346899999999987622 1111221111 1233467899999864
No 265
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.84 E-value=5.6e-09 Score=92.05 Aligned_cols=150 Identities=16% Similarity=0.118 Sum_probs=80.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceecc-C-CCCCHHHHHHHHHHHH
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGS-Y-TESDPVRIAVEGVETF 179 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~-~-~~~~~~~~~~~~l~~~ 179 (344)
..|+++|.+||||||+++.+. +.+.... .++. .+..++.. . ...
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~------~~~~~~~-~~~t--------------i~~d~~~~~i~~~~------------- 48 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFT------EGRFAEV-SDPT--------------VGVDFFSRLIEIEP------------- 48 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHH------cCCCCCC-CCce--------------eceEEEEEEEEECC-------------
Confidence 469999999999999999998 3322111 0000 01111100 0 000
Q ss_pred HhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHH---HHHHHHhc----cCCcCEEEeecCCC
Q 019214 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQ----SVSVGAVIVTKMDG 252 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~---~~~~~~~~----~~~~~~lVinK~D~ 252 (344)
...+.+.+.||||..... .+. ......+|.+++|.|.+...... .....+.. ...+..+|.||+|+
T Consensus 49 -~~~~~l~i~Dt~G~~~~~-----~~~-~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl 121 (211)
T cd04111 49 -GVRIKLQLWDTAGQERFR-----SIT-RSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDL 121 (211)
T ss_pred -CCEEEEEEEeCCcchhHH-----HHH-HHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccc
Confidence 013567899999974221 111 11234679999999998653222 22222211 12234677899998
Q ss_pred CCCh----hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 253 HAKG----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 253 ~~~~----~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
.... ..........+. +.+.+|+++|+| ++++++.|.+.+
T Consensus 122 ~~~~~v~~~~~~~~~~~~~~------------------~~~e~Sak~g~~-v~e~f~~l~~~~ 165 (211)
T cd04111 122 ESQRQVTREEAEKLAKDLGM------------------KYIETSARTGDN-VEEAFELLTQEI 165 (211)
T ss_pred ccccccCHHHHHHHHHHhCC------------------EEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 5421 111122222221 223467778888 888888887654
No 266
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=98.84 E-value=6.6e-09 Score=87.20 Aligned_cols=103 Identities=15% Similarity=-0.013 Sum_probs=57.2
Q ss_pred CCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHhc----cCCcCEEEeecCCCCCCh
Q 019214 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ----SVSVGAVIVTKMDGHAKG 256 (344)
Q Consensus 184 ~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~~----~~~~~~lVinK~D~~~~~ 256 (344)
+.+.|.||||..... . +... ....+|.+++|.|.+..... ......+.. ...+..+|.||+|+....
T Consensus 49 ~~l~i~Dt~G~~~~~-~----~~~~-~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~ 122 (163)
T cd04176 49 SVLEILDTAGTEQFA-S----MRDL-YIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESER 122 (163)
T ss_pred EEEEEEECCCccccc-c----hHHH-HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcC
Confidence 345689999964322 1 1111 13368899999998764322 222222221 123457889999985421
Q ss_pred hh----HHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 257 GG----ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 257 ~~----~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
.. ........+ .+.+.+|+.+|.| +.++++.+.+.+
T Consensus 123 ~~~~~~~~~~~~~~~------------------~~~~~~Sa~~~~~-v~~l~~~l~~~l 162 (163)
T cd04176 123 EVSSAEGRALAEEWG------------------CPFMETSAKSKTM-VNELFAEIVRQM 162 (163)
T ss_pred ccCHHHHHHHHHHhC------------------CEEEEecCCCCCC-HHHHHHHHHHhc
Confidence 11 111111111 1234578889999 999998887643
No 267
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.84 E-value=3.8e-09 Score=107.81 Aligned_cols=67 Identities=22% Similarity=0.275 Sum_probs=40.2
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH--HHHHHHHhc-cCCcCEEEeecCCCCC
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFKQ-SVSVGAVIVTKMDGHA 254 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~--~~~~~~~~~-~~~~~~lVinK~D~~~ 254 (344)
.+..++||||||.. .+...+. .....+|.+++|+|+..+... .+....... ..+..++++||+|...
T Consensus 102 ~~~~~~liDtPG~~----~f~~~~~--~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~ 171 (632)
T PRK05506 102 PKRKFIVADTPGHE----QYTRNMV--TGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVD 171 (632)
T ss_pred CCceEEEEECCChH----HHHHHHH--HHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEeccccc
Confidence 36788999999963 2322332 223468999999999766211 111111111 1234467899999864
No 268
>PTZ00369 Ras-like protein; Provisional
Probab=98.83 E-value=5.6e-08 Score=83.99 Aligned_cols=103 Identities=14% Similarity=0.049 Sum_probs=57.7
Q ss_pred CCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchh---HHHHHHHHhc----cCCcCEEEeecCCCCCCh
Q 019214 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQAQAFKQ----SVSVGAVIVTKMDGHAKG 256 (344)
Q Consensus 184 ~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~---~~~~~~~~~~----~~~~~~lVinK~D~~~~~ 256 (344)
+.+.++||||..... . +.. .....+|.+++|+|.+.... .......+.. ...+.++|.||+|.....
T Consensus 53 ~~l~i~Dt~G~~~~~-~----l~~-~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~ 126 (189)
T PTZ00369 53 CLLDILDTAGQEEYS-A----MRD-QYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSER 126 (189)
T ss_pred EEEEEEeCCCCccch-h----hHH-HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc
Confidence 456689999975432 1 111 11336789999999886532 1111222211 122457889999974321
Q ss_pred ----hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 257 ----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 257 ----~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
..........+ .+.+.+|+.+|.| ++++++++.+.+
T Consensus 127 ~i~~~~~~~~~~~~~------------------~~~~e~Sak~~~g-i~~~~~~l~~~l 166 (189)
T PTZ00369 127 QVSTGEGQELAKSFG------------------IPFLETSAKQRVN-VDEAFYELVREI 166 (189)
T ss_pred ccCHHHHHHHHHHhC------------------CEEEEeeCCCCCC-HHHHHHHHHHHH
Confidence 01111112111 1345678889999 999888886654
No 269
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.82 E-value=1.2e-08 Score=82.98 Aligned_cols=105 Identities=13% Similarity=-0.002 Sum_probs=58.3
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHHHH-------HHHhccCCcCEEEeecCCCCCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQA-------QAFKQSVSVGAVIVTKMDGHAK 255 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~~~-------~~~~~~~~~~~lVinK~D~~~~ 255 (344)
+.++.++||||........ ......+|.+++|+|++.+....... ........+..+|+||+|....
T Consensus 44 ~~~~~l~D~~g~~~~~~~~------~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~ 117 (157)
T cd00882 44 KVKLQIWDTAGQERFRSLR------RLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEE 117 (157)
T ss_pred EEEEEEEecCChHHHHhHH------HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccc
Confidence 5678999999975432111 12234678999999998753222211 1122223456888999998655
Q ss_pred hhhHHHH-HHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHH
Q 019214 256 GGGALSA-VAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIH 308 (344)
Q Consensus 256 ~~~~~~~-~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~ 308 (344)
....... ... . ......+.+.+|+..|.| +.+++++|.
T Consensus 118 ~~~~~~~~~~~-------------~-~~~~~~~~~~~s~~~~~~-i~~~~~~l~ 156 (157)
T cd00882 118 RVVSEEELAEQ-------------L-AKELGVPYFETSAKTGEN-VEELFEELA 156 (157)
T ss_pred cchHHHHHHHH-------------H-HhhcCCcEEEEecCCCCC-hHHHHHHHh
Confidence 3222211 000 0 001112345566777778 888887764
No 270
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=98.82 E-value=2.6e-08 Score=88.57 Aligned_cols=42 Identities=26% Similarity=0.332 Sum_probs=37.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcch
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG 143 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~ 143 (344)
.+++..|+.||||||++.+||..|+..|.+|++.|.|.+.+.
T Consensus 49 iI~VlSGKGGVGKSTvt~nla~~La~~g~~vglLD~Dl~GPS 90 (300)
T KOG3022|consen 49 IILVLSGKGGVGKSTVTVNLALALASEGKKVGLLDADLCGPS 90 (300)
T ss_pred EEEEEeCCCCCchhHHHHHHHHHHhcCCCcEEEEeecccCCC
Confidence 455556999999999999999999999999999999986654
No 271
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.82 E-value=6.4e-09 Score=87.57 Aligned_cols=103 Identities=13% Similarity=0.035 Sum_probs=55.7
Q ss_pred CCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHH------HHHHHHh--ccCCcCEEEeecCCCCCC
Q 019214 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF------DQAQAFK--QSVSVGAVIVTKMDGHAK 255 (344)
Q Consensus 184 ~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~------~~~~~~~--~~~~~~~lVinK~D~~~~ 255 (344)
+.+.++||||........ .. .....+|.+++|+|++...... ....... ....|..+|.||+|....
T Consensus 47 ~~~~i~D~~g~~~~~~~~---~~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 121 (165)
T cd04146 47 VSLEILDTAGQQQADTEQ---LE--RSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHY 121 (165)
T ss_pred EEEEEEECCCCcccccch---HH--HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHh
Confidence 456799999976311111 11 1123579999999998653221 1122222 112345788999997432
Q ss_pred h----hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCC-CChhHHHHHHHhh
Q 019214 256 G----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGM-GDWSGFMDKIHEV 310 (344)
Q Consensus 256 ~----~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~-g~i~~l~~~i~~~ 310 (344)
. ..........+ .+.+.+|+.+|+ | ++++++.+...
T Consensus 122 ~~v~~~~~~~~~~~~~------------------~~~~e~Sa~~~~~~-v~~~f~~l~~~ 162 (165)
T cd04146 122 RQVSTEEGEKLASELG------------------CLFFEVSAAEDYDG-VHSVFHELCRE 162 (165)
T ss_pred CccCHHHHHHHHHHcC------------------CEEEEeCCCCCchh-HHHHHHHHHHH
Confidence 1 11112222111 123446777885 7 88888887653
No 272
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.81 E-value=1.1e-08 Score=93.68 Aligned_cols=158 Identities=16% Similarity=0.217 Sum_probs=91.5
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhccc-CCcceeccCCCCCHHHHHHHHHHHHHhC
Q 019214 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATK-AKIPFYGSYTESDPVRIAVEGVETFKKE 182 (344)
Q Consensus 104 i~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~-~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 182 (344)
|.+||.||+||||+++.++ .-+.-|.+ .+++|. .++.+.... .
T Consensus 162 VGLVG~PNaGKSTlls~vS------~AkPKIad------------YpFTTL~PnLGvV~~~------------------~ 205 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVS------AAKPKIAD------------YPFTTLVPNLGVVRVD------------------G 205 (369)
T ss_pred cccccCCCCcHHHHHHHHh------hcCCcccC------------CccccccCcccEEEec------------------C
Confidence 5789999999999999999 66666655 355554 233222211 1
Q ss_pred CCCEEEEcCCCCCcchHH---H-HHHHHHhhhhcCCcEEEEEEcCCcc--hhHH-------HHHHHHhcc--CCcCEEEe
Q 019214 183 NCDLIIVDTSGRHKQEAA---L-FEEMRQVSEATNPDLVIFVMDSSIG--QAAF-------DQAQAFKQS--VSVGAVIV 247 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~---~-~~~l~~~~~~~~~d~illvvda~~~--~~~~-------~~~~~~~~~--~~~~~lVi 247 (344)
+..+++-|-||+.....+ + .+.++-+.+ +...++|+|.+.. .+.. ..+..|... .++..+|+
T Consensus 206 ~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER---t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~ 282 (369)
T COG0536 206 GESFVVADIPGLIEGASEGVGLGLRFLRHIER---TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVL 282 (369)
T ss_pred CCcEEEecCcccccccccCCCccHHHHHHHHh---hheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEE
Confidence 456899999998443211 1 112333333 4578999998743 1122 123334332 24568999
Q ss_pred ecCCCCCChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCCC
Q 019214 248 TKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMD 314 (344)
Q Consensus 248 nK~D~~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~~ 314 (344)
||+|.............. +.........+++|+++++| ++.|...+.+.++..
T Consensus 283 NKiD~~~~~e~~~~~~~~-------------l~~~~~~~~~~~ISa~t~~g-~~~L~~~~~~~l~~~ 335 (369)
T COG0536 283 NKIDLPLDEEELEELKKA-------------LAEALGWEVFYLISALTREG-LDELLRALAELLEET 335 (369)
T ss_pred eccCCCcCHHHHHHHHHH-------------HHHhcCCCcceeeehhcccC-HHHHHHHHHHHHHHh
Confidence 999965443222221111 10000111112299999999 999999888877543
No 273
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.81 E-value=4e-09 Score=91.26 Aligned_cols=120 Identities=12% Similarity=0.096 Sum_probs=61.6
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH----HHHHHhcc--CCcCEEEeecCCCCCCh
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQS--VSVGAVIVTKMDGHAKG 256 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~----~~~~~~~~--~~~~~lVinK~D~~~~~ 256 (344)
.+.+.|.||||..... .+... ....+|.+++|.|.+....... ....+... ..+..+|.||+|+....
T Consensus 47 ~~~l~i~Dt~G~~~~~-----~l~~~-~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~ 120 (189)
T cd04134 47 HIELSLWDTAGQEEFD-----RLRSL-SYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREAR 120 (189)
T ss_pred EEEEEEEECCCChhcc-----ccccc-cccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCh
Confidence 4567899999974321 12111 2346789999988776422211 22222221 23458889999986542
Q ss_pred hhHHHHHHHhCCCeEEEecCCCC-CcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 257 GGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 257 ~~~~~~~~~~~~pv~~~~~g~~~-~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
... ......+.+......|... ... ...+.+.+|+++|+| ++++++++.+.+
T Consensus 121 ~~~-~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~e~SAk~~~~-v~e~f~~l~~~~ 173 (189)
T cd04134 121 NER-DDLQRYGKHTISYEEGLAVAKRI-NALRYLECSAKLNRG-VNEAFTEAARVA 173 (189)
T ss_pred hhH-HHHhhccCCCCCHHHHHHHHHHc-CCCEEEEccCCcCCC-HHHHHHHHHHHH
Confidence 111 1111111000000000000 000 112335689999999 999999988755
No 274
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.81 E-value=1.9e-07 Score=84.81 Aligned_cols=152 Identities=20% Similarity=0.214 Sum_probs=94.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
...+|++||-+|+|||||+++|.. .+-.-.+.+..+.||-+.. ..+|
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~-Aal~p~drLFATLDpT~h~-----------a~Lp--------------------- 223 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTK-AALYPNDRLFATLDPTLHS-----------AHLP--------------------- 223 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHh-hhcCccchhheeccchhhh-----------ccCC---------------------
Confidence 346899999999999999999993 3333445566666654321 1111
Q ss_pred HhCCCCEEEEcCCCCCc-chHHHHHHHH-HhhhhcCCcEEEEEEcCCcch-hH--HHHHHHHhccCCc--------CEEE
Q 019214 180 KKENCDLIIVDTSGRHK-QEAALFEEMR-QVSEATNPDLVIFVMDSSIGQ-AA--FDQAQAFKQSVSV--------GAVI 246 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~-~~~~~~~~l~-~~~~~~~~d~illvvda~~~~-~~--~~~~~~~~~~~~~--------~~lV 246 (344)
.+..+++.||.|+.+ -+..+++..+ .+.....+|+++.|+|.+.+. +. ......++. +.+ -+=|
T Consensus 224 --sg~~vlltDTvGFisdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~-igv~~~pkl~~mieV 300 (410)
T KOG0410|consen 224 --SGNFVLLTDTVGFISDLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQ-IGVPSEPKLQNMIEV 300 (410)
T ss_pred --CCcEEEEeechhhhhhCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHh-cCCCcHHHHhHHHhh
Confidence 156678999999753 3445655554 345566899999999998762 11 112222222 111 1224
Q ss_pred eecCCCCCChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 247 VTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 247 inK~D~~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
-||+|..... ..-++ .-...+|+++|.| ++++.+.+...+.
T Consensus 301 dnkiD~e~~~-----------------------~e~E~-n~~v~isaltgdg-l~el~~a~~~kv~ 341 (410)
T KOG0410|consen 301 DNKIDYEEDE-----------------------VEEEK-NLDVGISALTGDG-LEELLKAEETKVA 341 (410)
T ss_pred cccccccccc-----------------------Ccccc-CCccccccccCcc-HHHHHHHHHHHhh
Confidence 5666653220 11111 1256789999999 9999999888763
No 275
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.80 E-value=4.4e-08 Score=96.47 Aligned_cols=65 Identities=29% Similarity=0.302 Sum_probs=40.6
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchh-----HHHHHHHHhccCCcCEEEeecCCCCC
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA-----AFDQAQAFKQSVSVGAVIVTKMDGHA 254 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~-----~~~~~~~~~~~~~~~~lVinK~D~~~ 254 (344)
.++.++||||||.. .+...+.. ....+|.+++|+|+..+.. ....+..+. .++.++++||+|...
T Consensus 105 ~~~~i~~iDTPGh~----~f~~~~~~--~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg--~~~iIvvvNKiD~~~ 174 (474)
T PRK05124 105 EKRKFIIADTPGHE----QYTRNMAT--GASTCDLAILLIDARKGVLDQTRRHSFIATLLG--IKHLVVAVNKMDLVD 174 (474)
T ss_pred CCcEEEEEECCCcH----HHHHHHHH--HHhhCCEEEEEEECCCCccccchHHHHHHHHhC--CCceEEEEEeecccc
Confidence 36789999999953 23333321 2356899999999987621 112222222 234577899999864
No 276
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=98.79 E-value=1.5e-07 Score=83.75 Aligned_cols=78 Identities=13% Similarity=0.160 Sum_probs=49.0
Q ss_pred CCEEEEcCC-CCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc-h-hHHHHHHHHhccCCcCEEEeecCCCCCChhhHH
Q 019214 184 CDLIIVDTS-GRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG-Q-AAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGAL 260 (344)
Q Consensus 184 ~d~vlIDT~-G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~-~-~~~~~~~~~~~~~~~~~lVinK~D~~~~~~~~~ 260 (344)
.|++||||| |...+- +.....+|.+++|..|+.. . +....++......-+.++|+||.+.-.. .+.
T Consensus 164 ~~~~IIDsaaG~gCpV---------i~sl~~aD~ai~VTEPTp~glhD~kr~~el~~~f~ip~~iViNr~~~g~s--~ie 232 (284)
T COG1149 164 ADLLIIDSAAGTGCPV---------IASLKGADLAILVTEPTPFGLHDLKRALELVEHFGIPTGIVINRYNLGDS--EIE 232 (284)
T ss_pred cceeEEecCCCCCChH---------HHhhccCCEEEEEecCCccchhHHHHHHHHHHHhCCceEEEEecCCCCch--HHH
Confidence 789999995 554321 2234568999999999853 2 3333333222222356899999954333 566
Q ss_pred HHHHHhCCCeEE
Q 019214 261 SAVAATKSPVIF 272 (344)
Q Consensus 261 ~~~~~~~~pv~~ 272 (344)
+...+.++|+..
T Consensus 233 ~~~~e~gi~il~ 244 (284)
T COG1149 233 EYCEEEGIPILG 244 (284)
T ss_pred HHHHHcCCCeeE
Confidence 777777777764
No 277
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.79 E-value=8.8e-08 Score=80.94 Aligned_cols=104 Identities=14% Similarity=0.043 Sum_probs=56.5
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHh----ccCCcCEEEeecCCCCCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFK----QSVSVGAVIVTKMDGHAK 255 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~----~~~~~~~lVinK~D~~~~ 255 (344)
.+.+.++||||..... . +... ....++.+++|+|.+..... ......+. ....+..+|.||+|....
T Consensus 48 ~~~~~i~Dt~G~~~~~-~----~~~~-~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~ 121 (168)
T cd04177 48 QCDLEILDTAGTEQFT-A----MREL-YIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDD 121 (168)
T ss_pred EEEEEEEeCCCcccch-h----hhHH-HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcccc
Confidence 3566799999975432 1 1111 12346788899998764221 11112111 112344678999998543
Q ss_pred hh----hHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhh
Q 019214 256 GG----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (344)
Q Consensus 256 ~~----~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~ 310 (344)
.. .........+ ..+.+.+|+..|.| ++++++++...
T Consensus 122 ~~~~~~~~~~~~~~~~-----------------~~~~~~~SA~~~~~-i~~~f~~i~~~ 162 (168)
T cd04177 122 RQVSREDGVSLSQQWG-----------------NVPFYETSARKRTN-VDEVFIDLVRQ 162 (168)
T ss_pred CccCHHHHHHHHHHcC-----------------CceEEEeeCCCCCC-HHHHHHHHHHH
Confidence 21 1111111111 12345578889999 99998888654
No 278
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.78 E-value=1.3e-08 Score=86.02 Aligned_cols=66 Identities=23% Similarity=0.240 Sum_probs=37.9
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchh---HHHHHHHHhccCCcCEEEeecC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQAQAFKQSVSVGAVIVTKM 250 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~---~~~~~~~~~~~~~~~~lVinK~ 250 (344)
..++.||||||............... ...+|.+++|+++..... ...............++|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~--~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEY--LPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHH--HSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHHh--hccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 46789999999854322111112222 246899999999987522 2223333333344467888985
No 279
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=98.78 E-value=7.5e-08 Score=73.05 Aligned_cols=71 Identities=30% Similarity=0.313 Sum_probs=54.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHhC
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 182 (344)
++++.|.+|+||||++.+++..+++.|+++.+++
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~---------------------------------------------- 34 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLID---------------------------------------------- 34 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC----------------------------------------------
Confidence 3678899999999999999999999999998877
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG 226 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~ 226 (344)
|++++|++|........ .......+|.+++++++...
T Consensus 35 --d~iivD~~~~~~~~~~~-----~~~~~~~~~~vi~v~~~~~~ 71 (99)
T cd01983 35 --DYVLIDTPPGLGLLVLL-----CLLALLAADLVIIVTTPEAL 71 (99)
T ss_pred --CEEEEeCCCCccchhhh-----hhhhhhhCCEEEEecCCchh
Confidence 56999999876543211 01123357889999988754
No 280
>PRK10218 GTP-binding protein; Provisional
Probab=98.77 E-value=6.2e-08 Score=97.62 Aligned_cols=175 Identities=17% Similarity=0.135 Sum_probs=89.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHH---HcCC-ccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQ---KKGW-KPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGV 176 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~---~~g~-~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l 176 (344)
.+.|+++|..|+|||||+.+|..... ..+. .-.+.|.++ .....++.+.....
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~-----------~E~erGiTi~~~~~------------ 61 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSND-----------LEKERGITILAKNT------------ 61 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeecccc-----------ccccCceEEEEEEE------------
Confidence 46799999999999999999984321 1110 001222211 01111222211100
Q ss_pred HHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchh--HHHHHHHHhccCCcCEEEeecCCCCC
Q 019214 177 ETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAFKQSVSVGAVIVTKMDGHA 254 (344)
Q Consensus 177 ~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~--~~~~~~~~~~~~~~~~lVinK~D~~~ 254 (344)
.+...++.+.++||||...... .+.. ....+|.+++|+|++.+.. .............+..+++||+|...
T Consensus 62 -~i~~~~~~inliDTPG~~df~~----~v~~--~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~ 134 (607)
T PRK10218 62 -AIKWNDYRINIVDTPGHADFGG----EVER--VMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPG 134 (607)
T ss_pred -EEecCCEEEEEEECCCcchhHH----HHHH--HHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCC
Confidence 0011367889999999865332 2211 2345899999999987622 22222222222223478899999853
Q ss_pred -ChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCC----------CChhHHHHHHHhhCCC
Q 019214 255 -KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGM----------GDWSGFMDKIHEVVPM 313 (344)
Q Consensus 255 -~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~----------g~i~~l~~~i~~~~~~ 313 (344)
.....++.+...-..+ + ..+-....|.+++|++.|. | +..|++.|.+.++.
T Consensus 135 a~~~~vl~ei~~l~~~l-----~--~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~-i~~Lld~Ii~~iP~ 196 (607)
T PRK10218 135 ARPDWVVDQVFDLFVNL-----D--ATDEQLDFPIVYASALNGIAGLDHEDMAED-MTPLYQAIVDHVPA 196 (607)
T ss_pred CchhHHHHHHHHHHhcc-----C--ccccccCCCEEEeEhhcCcccCCccccccc-hHHHHHHHHHhCCC
Confidence 2223332222110000 0 0000011234455666654 5 88888888888764
No 281
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.77 E-value=7.6e-08 Score=81.26 Aligned_cols=107 Identities=19% Similarity=0.194 Sum_probs=60.5
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHhCC
Q 019214 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKEN 183 (344)
Q Consensus 104 i~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~ 183 (344)
|+++|.+||||||+++++. +.+.. .. +.+ + .+....... ..+
T Consensus 2 i~ivG~~~vGKTsli~~~~------~~~~~--~~--~~p----------t-~g~~~~~i~-----------------~~~ 43 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLS------SERSL--ES--VVP----------T-TGFNSVAIP-----------------TQD 43 (164)
T ss_pred EEEECCCCCCHHHHHHHHh------cCCCc--cc--ccc----------c-CCcceEEEe-----------------eCC
Confidence 6899999999999999998 33210 00 000 0 011100000 125
Q ss_pred CCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchh---HHHHHHHHhc--cCCcCEEEeecCCCCC
Q 019214 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQAQAFKQ--SVSVGAVIVTKMDGHA 254 (344)
Q Consensus 184 ~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~---~~~~~~~~~~--~~~~~~lVinK~D~~~ 254 (344)
+.+.+.||||...... +. ......+|.+++|+|++.... .......+.. ...+..+|.||.|...
T Consensus 44 ~~l~i~Dt~G~~~~~~-----~~-~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~ 113 (164)
T cd04162 44 AIMELLEIGGSQNLRK-----YW-KRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPA 113 (164)
T ss_pred eEEEEEECCCCcchhH-----HH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcC
Confidence 6778999999753221 11 112346899999999876432 1222222221 2234578899999854
No 282
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.77 E-value=4.8e-08 Score=94.63 Aligned_cols=112 Identities=18% Similarity=0.172 Sum_probs=64.3
Q ss_pred CCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch---hHHHHHHHHhc-cCCcCEEEeecCCCCCChhh-
Q 019214 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ---AAFDQAQAFKQ-SVSVGAVIVTKMDGHAKGGG- 258 (344)
Q Consensus 184 ~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~---~~~~~~~~~~~-~~~~~~lVinK~D~~~~~~~- 258 (344)
+.+.|+||||.. .+...+ +.....+|.+++|+|++.+. ...+....... ..++..+|+||+|.......
T Consensus 85 ~~i~liDtPG~~----~f~~~~--~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~~~~ 158 (411)
T PRK04000 85 RRVSFVDAPGHE----TLMATM--LSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKERAL 158 (411)
T ss_pred cEEEEEECCCHH----HHHHHH--HHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccchhHH
Confidence 567899999963 232222 22233579999999998642 22222222221 22334778999998653211
Q ss_pred -HHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCC
Q 019214 259 -ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (344)
Q Consensus 259 -~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~ 313 (344)
..+.+...- +.. .....+.+.+|++.|+| ++.|++.|.+.++.
T Consensus 159 ~~~~~i~~~l---------~~~--~~~~~~ii~vSA~~g~g-I~~L~~~L~~~l~~ 202 (411)
T PRK04000 159 ENYEQIKEFV---------KGT--VAENAPIIPVSALHKVN-IDALIEAIEEEIPT 202 (411)
T ss_pred HHHHHHHHHh---------ccc--cCCCCeEEEEECCCCcC-HHHHHHHHHHhCCC
Confidence 112121100 000 01123456789999999 99999999987653
No 283
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.76 E-value=6e-08 Score=100.00 Aligned_cols=130 Identities=18% Similarity=0.085 Sum_probs=68.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeec-CcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA-DTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~-D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 178 (344)
+.+.|+++|.+|+|||||+++|....... .++.-++. +..+-...+.-....+..-....
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~-~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~------------------ 69 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRI-HKIGEVHDGAATMDWMEQEKERGITITSAATT------------------ 69 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCc-cccccccCCccccCCCHHHHhcCCCEecceEE------------------
Confidence 45789999999999999999998432211 01110110 00000000011111111111100
Q ss_pred HHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH--HHHHHHHhccCCcCEEEeecCCCCC
Q 019214 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFKQSVSVGAVIVTKMDGHA 254 (344)
Q Consensus 179 ~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~--~~~~~~~~~~~~~~~lVinK~D~~~ 254 (344)
+...++.+.|+||||...... +. ......+|.+++|+|++.+... ............+..+++||+|...
T Consensus 70 ~~~~~~~i~liDTPG~~~~~~----~~--~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 70 VFWKGHRINIIDTPGHVDFTV----EV--ERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTG 141 (689)
T ss_pred EEECCeEEEEEECCCCcchhH----HH--HHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 112377889999999864322 11 1222346999999999876322 2233333322334578899999864
No 284
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=98.76 E-value=1e-08 Score=95.28 Aligned_cols=38 Identities=32% Similarity=0.498 Sum_probs=35.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCc
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~ 139 (344)
+++.+.|+.||||||+++++|.++++.|+++++++.||
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dp 39 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDP 39 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESST
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCC
Confidence 67899999999999999999999999999999999998
No 285
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.76 E-value=3.9e-07 Score=90.73 Aligned_cols=149 Identities=15% Similarity=0.188 Sum_probs=75.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeec---CcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA---DTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGV 176 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~---D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l 176 (344)
+.+.|+++|.+|+||||++.+|......- .+..-|.. +......+.... ...++.+.....
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i-~~~g~v~~~~~~~~~~~D~~~~E---~~rgiSi~~~~~------------ 72 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAI-QEAGTVKGRKSGRHATSDWMEME---KQRGISVTSSVM------------ 72 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCc-cccceeeccccCccccCCCcHHH---HhhCCceeeeeE------------
Confidence 44789999999999999999997432110 11122221 011101111111 111222111000
Q ss_pred HHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH--HHHHHHHhccCCcCEEEeecCCCCC
Q 019214 177 ETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFKQSVSVGAVIVTKMDGHA 254 (344)
Q Consensus 177 ~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~--~~~~~~~~~~~~~~~lVinK~D~~~ 254 (344)
.+...++.+.++||||....... ... ....+|.+++|+|++.+... ............+..+++||+|...
T Consensus 73 -~~~~~~~~inliDTPG~~df~~~----~~~--~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 73 -QFPYRDCLINLLDTPGHEDFSED----TYR--TLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDG 145 (526)
T ss_pred -EEEECCEEEEEEECCCchhhHHH----HHH--HHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccc
Confidence 01123677899999998532221 111 12357999999999876322 2222222222234578899999864
Q ss_pred C-hhhHHHHH-HHhCCCeE
Q 019214 255 K-GGGALSAV-AATKSPVI 271 (344)
Q Consensus 255 ~-~~~~~~~~-~~~~~pv~ 271 (344)
. ....++.+ ..++.++.
T Consensus 146 a~~~~~l~~i~~~l~~~~~ 164 (526)
T PRK00741 146 REPLELLDEIEEVLGIACA 164 (526)
T ss_pred cCHHHHHHHHHHHhCCCCe
Confidence 3 23333333 34566544
No 286
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=98.76 E-value=2e-08 Score=88.97 Aligned_cols=107 Identities=21% Similarity=0.189 Sum_probs=60.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHhC
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 182 (344)
.|+++|.+||||||+++++. +.+.. ...+ + .+..++... ..
T Consensus 2 KIvivG~~~vGKTSLi~r~~------~~~f~--~~~~-------------T-ig~~~~~~~-----------------~~ 42 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYM------ERRFK--DTVS-------------T-VGGAFYLKQ-----------------WG 42 (220)
T ss_pred EEEEECCCCCcHHHHHHHHh------cCCCC--CCCC-------------c-cceEEEEEE-----------------ee
Confidence 47899999999999999998 33221 1000 0 011111100 01
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHHH---HHHHh---ccCCcCEEEeecCCCCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ---AQAFK---QSVSVGAVIVTKMDGHA 254 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~~---~~~~~---~~~~~~~lVinK~D~~~ 254 (344)
.+.+.|+||||..... . +... ....+|.+++|+|.+........ ...+. ....+.++|.||+|+..
T Consensus 43 ~~~l~iwDt~G~e~~~-~----l~~~-~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 43 PYNISIWDTAGREQFH-G----LGSM-YCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTE 114 (220)
T ss_pred EEEEEEEeCCCcccch-h----hHHH-HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 5677899999975322 1 1111 13468999999999864322221 11111 11234578899999854
No 287
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.76 E-value=3.1e-08 Score=95.87 Aligned_cols=112 Identities=16% Similarity=0.161 Sum_probs=64.0
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch---hHHHHHHHHhc-cCCcCEEEeecCCCCCChhh
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ---AAFDQAQAFKQ-SVSVGAVIVTKMDGHAKGGG 258 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~---~~~~~~~~~~~-~~~~~~lVinK~D~~~~~~~ 258 (344)
+..+.++||||.. .+...+ +.....+|.+++|+|++.+. ...+.+..+.. ..++..+++||+|.......
T Consensus 79 ~~~i~liDtPGh~----~f~~~~--~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~~~ 152 (406)
T TIGR03680 79 LRRVSFVDAPGHE----TLMATM--LSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKEKA 152 (406)
T ss_pred ccEEEEEECCCHH----HHHHHH--HHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHHHH
Confidence 3567899999974 232333 22233579999999998642 22222222221 12334778999998753211
Q ss_pred --HHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 259 --ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 259 --~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
..+.+...- ... .....+.+.+|+++|+| ++.|++.|...++
T Consensus 153 ~~~~~~i~~~l---------~~~--~~~~~~ii~vSA~~g~g-i~~L~e~L~~~l~ 196 (406)
T TIGR03680 153 LENYEEIKEFV---------KGT--VAENAPIIPVSALHNAN-IDALLEAIEKFIP 196 (406)
T ss_pred HHHHHHHHhhh---------hhc--ccCCCeEEEEECCCCCC-hHHHHHHHHHhCC
Confidence 112221100 000 01123456789999999 9999999998765
No 288
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.75 E-value=1.5e-07 Score=79.68 Aligned_cols=67 Identities=19% Similarity=0.173 Sum_probs=38.4
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHH---HHHHHHhc----cCCcCEEEeecCCCCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQ----SVSVGAVIVTKMDGHA 254 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~---~~~~~~~~----~~~~~~lVinK~D~~~ 254 (344)
.+.+.++||||....... +.. .....+|.+++|+|++...... .....+.. ...+..+|.||+|+..
T Consensus 50 ~~~~~i~Dt~G~~~~~~~----~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 123 (170)
T cd04115 50 RIKVQLWDTAGQERFRKS----MVQ-HYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLRE 123 (170)
T ss_pred EEEEEEEeCCChHHHHHh----hHH-HhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchh
Confidence 467789999996422111 111 1124679999999998653222 22222211 1235588899999853
No 289
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=98.75 E-value=1.4e-08 Score=88.20 Aligned_cols=37 Identities=30% Similarity=0.437 Sum_probs=34.9
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcC
Q 019214 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (344)
Q Consensus 104 i~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~ 140 (344)
.+++||||+||||-++-+...+...|+++++|..||-
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPa 41 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPA 41 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCc
Confidence 5789999999999999999999999999999999983
No 290
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=98.75 E-value=1.4e-07 Score=84.22 Aligned_cols=166 Identities=16% Similarity=0.179 Sum_probs=93.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchh------------HHHHHhhcc-------------cCC
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA------------FDQLKQNAT-------------KAK 156 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~------------~~~l~~~~~-------------~~~ 156 (344)
+.|+|.|+.|.||||++.||+.+|+..|++|..|.|||....+ .+.++.... ..+
T Consensus 1 r~IAiYGKGGIGKST~~~Nlsaala~~G~kVl~iGCDPK~DST~~ll~g~~~~Tvld~~~~~~~~e~~~ledvv~~G~~g 80 (273)
T PF00142_consen 1 RKIAIYGKGGIGKSTTASNLSAALAEMGKKVLQIGCDPKADSTRLLLGGKAIPTVLDLLREKGSVEDLELEDVVKEGFKG 80 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESSSSTSSCHHHTTSS-SBHHHHHHHHCTGGGS-HHHHSEEEGGG
T ss_pred CeEEEEcCCCcccChhhhHHHHHHHhccceeeEecccCCCccceeccCCccchhHHHHHhhccccccCCCCcEEEeccCC
Confidence 4699999999999999999999999999999999999932211 122222111 011
Q ss_pred cceeccCCCCC--------HHHHHHHHHHHHH--hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc
Q 019214 157 IPFYGSYTESD--------PVRIAVEGVETFK--KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG 226 (344)
Q Consensus 157 v~~~~~~~~~~--------~~~~~~~~l~~~~--~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~ 226 (344)
+...... +.. .+..+.+.++++. ..++|+++.|.-|---.-...+ . .+...++.+++|-+...-
T Consensus 81 i~CvEsG-GPePGvGCaGRGI~~a~~~L~~~~~~~~~~D~v~yDVLGDVVCGGFam----P-ir~g~a~evyIVtSge~m 154 (273)
T PF00142_consen 81 ILCVESG-GPEPGVGCAGRGIITALELLEELGAYEDDYDFVLYDVLGDVVCGGFAM----P-IREGYAQEVYIVTSGEFM 154 (273)
T ss_dssp EEEEE----SCTTSSBHHHHHHHHHHHHHHTTTSTSTSSEEEEEEESSSSCTTTTH----H-HHTTS-SEEEEEEBSSHH
T ss_pred ceeeccC-CCcccccccccchhhhhhhHHhhhhhhcCCceEEEEEEeeeEEeeeeh----h-hhhccCCEEEEEecCcHH
Confidence 1111111 111 2333444455442 2468999999877432110000 0 111246778887766421
Q ss_pred -----hhHHHHHHHHhcc--CCcCEEEeecCCCCCChhhHHHHHHHhCCCeEEE
Q 019214 227 -----QAAFDQAQAFKQS--VSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFI 273 (344)
Q Consensus 227 -----~~~~~~~~~~~~~--~~~~~lVinK~D~~~~~~~~~~~~~~~~~pv~~~ 273 (344)
.++..-...|... .++.++|.|.-+.......+.......+.|+...
T Consensus 155 slyAANNI~~~i~~~~~~g~~~l~GiI~N~r~~~~e~~~v~~fa~~~g~~i~~~ 208 (273)
T PF00142_consen 155 SLYAANNICKAIKNFADRGGARLGGIICNSRNVDDEEEIVEDFAERIGTPIIAF 208 (273)
T ss_dssp HHHHHHHHHHHHHHHCTTSS-EEEEEEEE-SSSTTHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHHHHHHhccCCCceEEEEecCCCCCCchHHHHHHHHHcCCcEEEe
Confidence 1222233444432 3467899997765555555667788899998765
No 291
>PRK00007 elongation factor G; Reviewed
Probab=98.74 E-value=6.7e-08 Score=99.59 Aligned_cols=130 Identities=18% Similarity=0.099 Sum_probs=68.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecC-cCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD-TFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D-~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 178 (344)
+.+.|+++|.+|+|||||+++|....... .++.-++.. .+.-...+.-.+..++.-....
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~-~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~------------------ 69 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVN-HKIGEVHDGAATMDWMEQEQERGITITSAATT------------------ 69 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCc-cccccccCCcccCCCCHHHHhCCCCEeccEEE------------------
Confidence 45789999999999999999998543211 011112110 0000000001111111111110
Q ss_pred HHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchh--HHHHHHHHhccCCcCEEEeecCCCCC
Q 019214 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAFKQSVSVGAVIVTKMDGHA 254 (344)
Q Consensus 179 ~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~--~~~~~~~~~~~~~~~~lVinK~D~~~ 254 (344)
+...++.+.||||||... +..++. .....+|.+++|+|+..+.. .............+..+++||+|...
T Consensus 70 ~~~~~~~~~liDTPG~~~----f~~ev~--~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 70 CFWKDHRINIIDTPGHVD----FTIEVE--RSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTG 141 (693)
T ss_pred EEECCeEEEEEeCCCcHH----HHHHHH--HHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 112367889999999743 222221 22234689999999987632 22333333333234578899999864
No 292
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=98.74 E-value=1.6e-08 Score=86.12 Aligned_cols=103 Identities=12% Similarity=-0.040 Sum_probs=57.3
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH------HHHHHhc-cCCcCEEEeecCCCCCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD------QAQAFKQ-SVSVGAVIVTKMDGHAK 255 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~------~~~~~~~-~~~~~~lVinK~D~~~~ 255 (344)
.+.+.++||||..... .+... ....+|.+++|.|.+....... ....... ...+..+|.||+|....
T Consensus 49 ~~~l~i~Dt~G~~~~~-----~l~~~-~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~ 122 (172)
T cd04141 49 PALLDILDTAGQAEFT-----AMRDQ-YMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQ 122 (172)
T ss_pred EEEEEEEeCCCchhhH-----HHhHH-HhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhc
Confidence 3567799999974321 12111 1335789999999876432211 1222211 12355888999997532
Q ss_pred h----hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhh
Q 019214 256 G----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (344)
Q Consensus 256 ~----~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~ 310 (344)
. ..........+ .+.+.+|++.|.| ++++++++...
T Consensus 123 ~~v~~~~~~~~a~~~~------------------~~~~e~Sa~~~~~-v~~~f~~l~~~ 162 (172)
T cd04141 123 RQVTTEEGRNLAREFN------------------CPFFETSAALRHY-IDDAFHGLVRE 162 (172)
T ss_pred CccCHHHHHHHHHHhC------------------CEEEEEecCCCCC-HHHHHHHHHHH
Confidence 1 11111111111 1334568888999 99988887654
No 293
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=98.74 E-value=3.5e-07 Score=86.27 Aligned_cols=121 Identities=17% Similarity=0.240 Sum_probs=69.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhccc-----CC-ccee-ccCCCCCHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATK-----AK-IPFY-GSYTESDPVRIAV 173 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~-----~~-v~~~-~~~~~~~~~~~~~ 173 (344)
.++.+++|..|+||||+++++... ..|++++++-+|.-..+--..+...... .. ++.. ++.+.. ....+.
T Consensus 4 ipv~iltGFLGaGKTTll~~ll~~--~~~~~iavi~Ne~G~~~ID~~ll~~~~~~~~~~~~v~el~nGCiCCs-~~~dl~ 80 (341)
T TIGR02475 4 IPVTIVTGFLGAGKTTLIRHLLQN--AAGRRIAVIVNEFGDLGIDGEILKACGIEGCSEENIVELANGCICCT-VADDFI 80 (341)
T ss_pred cCEEEEEECCCCCHHHHHHHHHhc--cCCCcEEEEECCCccccchHHHHhccccccCCcceEEEeCCCCcccc-CcHHHH
Confidence 357899999999999999999864 3688999999886544321112111100 01 1100 001111 112233
Q ss_pred HHHHHHH--hCCCCEEEEcCCCCCcchHHHHHHHH--HhhhhcCCcEEEEEEcCCc
Q 019214 174 EGVETFK--KENCDLIIVDTSGRHKQEAALFEEMR--QVSEATNPDLVIFVMDSSI 225 (344)
Q Consensus 174 ~~l~~~~--~~~~d~vlIDT~G~~~~~~~~~~~l~--~~~~~~~~d~illvvda~~ 225 (344)
.++..+. ...+|+|+|+|.|...+. .+...+. .+.....-|.++.|+|+..
T Consensus 81 ~~l~~l~~~~~~~d~IvIEtsG~a~P~-~i~~~~~~~~l~~~~~l~~vvtvVDa~~ 135 (341)
T TIGR02475 81 PTMTKLLARRQRPDHILIETSGLALPK-PLVQAFQWPEIRSRVTVDGVVTVVDGPA 135 (341)
T ss_pred HHHHHHHhccCCCCEEEEeCCCCCCHH-HHHHHhcCccccceEEeeeEEEEEECch
Confidence 4444443 347999999999997654 3333331 1112234577999999974
No 294
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.74 E-value=2.4e-08 Score=85.39 Aligned_cols=151 Identities=21% Similarity=0.139 Sum_probs=84.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
+...|+++|+.||||||++++|. ..+..-+-+ + .+..+....
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~------~~~~~~~~p--------------T--~g~~~~~i~---------------- 54 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLK------NGEISETIP--------------T--IGFNIEEIK---------------- 54 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHH------SSSEEEEEE--------------E--SSEEEEEEE----------------
T ss_pred cEEEEEEECCCccchHHHHHHhh------hccccccCc--------------c--cccccceee----------------
Confidence 44679999999999999999997 433221111 0 122111100
Q ss_pred HhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchh---HHHHHHHHhc----cCCcCEEEeecCCC
Q 019214 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQAQAFKQ----SVSVGAVIVTKMDG 252 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~---~~~~~~~~~~----~~~~~~lVinK~D~ 252 (344)
..++.+.+.|.+|...... . .. .....+|.++||+|++.... ....+..+.. ...|..+++||.|.
T Consensus 55 -~~~~~~~~~d~gG~~~~~~-~---w~--~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~ 127 (175)
T PF00025_consen 55 -YKGYSLTIWDLGGQESFRP-L---WK--SYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDL 127 (175)
T ss_dssp -ETTEEEEEEEESSSGGGGG-G---GG--GGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTS
T ss_pred -eCcEEEEEEeccccccccc-c---ce--eeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccc
Confidence 1267788999999743211 1 11 11235789999999986532 2222222221 12345677899998
Q ss_pred CCCh--hhHHHHHHHhCCCeEEEecCCCCCcCc--CCChHHHHHHHhCCCChhHHHHHHHhh
Q 019214 253 HAKG--GGALSAVAATKSPVIFIGTGEHMDEFE--VFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (344)
Q Consensus 253 ~~~~--~~~~~~~~~~~~pv~~~~~g~~~~~l~--~~~~~~~is~~~g~g~i~~l~~~i~~~ 310 (344)
.... ..+...+. +..+. ........|+.+|+| +.+.+++|.+.
T Consensus 128 ~~~~~~~~i~~~l~--------------l~~l~~~~~~~v~~~sa~~g~G-v~e~l~WL~~~ 174 (175)
T PF00025_consen 128 PDAMSEEEIKEYLG--------------LEKLKNKRPWSVFSCSAKTGEG-VDEGLEWLIEQ 174 (175)
T ss_dssp TTSSTHHHHHHHTT--------------GGGTTSSSCEEEEEEBTTTTBT-HHHHHHHHHHH
T ss_pred cCcchhhHHHhhhh--------------hhhcccCCceEEEeeeccCCcC-HHHHHHHHHhc
Confidence 5432 12222211 11121 111233457789999 99999998764
No 295
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.74 E-value=2e-08 Score=98.08 Aligned_cols=65 Identities=23% Similarity=0.357 Sum_probs=39.7
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch---------hHHHHHHHHhc-cCCcCEEEeecCC
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ---------AAFDQAQAFKQ-SVSVGAVIVTKMD 251 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~---------~~~~~~~~~~~-~~~~~~lVinK~D 251 (344)
.++.+.||||||.. ++..++. .....+|.+++|+|+..|. ...+....... ..+..++++||+|
T Consensus 83 ~~~~i~lIDtPGh~----~f~~~~~--~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD 156 (446)
T PTZ00141 83 PKYYFTIIDAPGHR----DFIKNMI--TGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMD 156 (446)
T ss_pred CCeEEEEEECCChH----HHHHHHH--HhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccc
Confidence 36788999999964 3333432 2234689999999998763 22222222221 1222357899999
Q ss_pred C
Q 019214 252 G 252 (344)
Q Consensus 252 ~ 252 (344)
.
T Consensus 157 ~ 157 (446)
T PTZ00141 157 D 157 (446)
T ss_pred c
Confidence 4
No 296
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=98.73 E-value=8.5e-09 Score=88.03 Aligned_cols=117 Identities=15% Similarity=0.150 Sum_probs=59.6
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH----HHHHHhc--cCCcCEEEeecCCCCCCh
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQ--SVSVGAVIVTKMDGHAKG 256 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~----~~~~~~~--~~~~~~lVinK~D~~~~~ 256 (344)
.+.+.|.||||..... .+.. .....+|.+++|.|.+....... ....+.. ...+.++|.||+|+....
T Consensus 48 ~~~l~i~Dt~G~~~~~-----~~~~-~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~ 121 (174)
T cd01871 48 PVNLGLWDTAGQEDYD-----RLRP-LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 121 (174)
T ss_pred EEEEEEEECCCchhhh-----hhhh-hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccCh
Confidence 3567899999974321 1211 12346899999999976432222 1121221 123557889999985432
Q ss_pred hhHHHHHHHhC-CCeEEEecCCCC-CcCcCCChHHHHHHHhCCCChhHHHHHHHh
Q 019214 257 GGALSAVAATK-SPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (344)
Q Consensus 257 ~~~~~~~~~~~-~pv~~~~~g~~~-~~l~~~~~~~~is~~~g~g~i~~l~~~i~~ 309 (344)
.. .+...... .++. ...++.. ..+. ..+.+.+|+++|+| ++++++.+.+
T Consensus 122 ~~-~~~~~~~~~~~v~-~~~~~~~~~~~~-~~~~~e~Sa~~~~~-i~~~f~~l~~ 172 (174)
T cd01871 122 DT-IEKLKEKKLTPIT-YPQGLAMAKEIG-AVKYLECSALTQKG-LKTVFDEAIR 172 (174)
T ss_pred hh-HHHHhhccCCCCC-HHHHHHHHHHcC-CcEEEEecccccCC-HHHHHHHHHH
Confidence 11 11111100 0000 0000101 0111 11345689999999 9999988765
No 297
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.73 E-value=6e-08 Score=86.01 Aligned_cols=65 Identities=12% Similarity=0.136 Sum_probs=40.7
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch--hHHHHHHHHhccCCcCEEEeecCCCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQSVSVGAVIVTKMDGH 253 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~--~~~~~~~~~~~~~~~~~lVinK~D~~ 253 (344)
++.+.|+||||....... . ......+|.+++|+|+..+. ..............+.++|+||+|..
T Consensus 72 ~~~i~iiDTPG~~~f~~~----~--~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 72 EYLINLIDSPGHVDFSSE----V--TAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred ceEEEEECCCCccccHHH----H--HHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 567889999998653322 2 12234589999999998763 22223333222222458889999975
No 298
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.72 E-value=2.1e-08 Score=84.84 Aligned_cols=104 Identities=13% Similarity=-0.019 Sum_probs=55.8
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHhc-------cCCcCEEEeecCCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ-------SVSVGAVIVTKMDG 252 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~~-------~~~~~~lVinK~D~ 252 (344)
.+.+.|.||||..... .+.. .....+|.+++|.|.+..... ......+.. ...+..+|.||+|.
T Consensus 53 ~~~l~i~D~~G~~~~~-----~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 126 (170)
T cd04116 53 FVTLQIWDTAGQERFR-----SLRT-PFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDI 126 (170)
T ss_pred EEEEEEEeCCChHHHH-----HhHH-HHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccc
Confidence 4567789999964211 1211 113457888888887654211 111121111 11245788999998
Q ss_pred CCCh---hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhh
Q 019214 253 HAKG---GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (344)
Q Consensus 253 ~~~~---~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~ 310 (344)
..+. ..........+ ..+.+.+|++.|.| +.++++.+.+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~-----------------~~~~~e~Sa~~~~~-v~~~~~~~~~~ 169 (170)
T cd04116 127 PERQVSTEEAQAWCRENG-----------------DYPYFETSAKDATN-VAAAFEEAVRR 169 (170)
T ss_pred cccccCHHHHHHHHHHCC-----------------CCeEEEEECCCCCC-HHHHHHHHHhh
Confidence 5321 11222222111 11234567888998 99888887643
No 299
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.72 E-value=4e-08 Score=83.51 Aligned_cols=104 Identities=15% Similarity=0.088 Sum_probs=58.2
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHhcc----CCcCEEEeecCCCCCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQS----VSVGAVIVTKMDGHAK 255 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~~~----~~~~~lVinK~D~~~~ 255 (344)
...+.+.||||..... .+. ......+|.+++|.|++..... ......+... ..+..+|.||+|+...
T Consensus 48 ~~~l~i~Dt~G~~~~~-----~~~-~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~ 121 (170)
T cd04108 48 PFSLQLWDTAGQERFK-----CIA-STYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSP 121 (170)
T ss_pred EEEEEEEeCCChHHHH-----hhH-HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCcc
Confidence 3567899999974321 121 1223478999999999764222 1222222111 1235789999998543
Q ss_pred hh-hH-----HHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 256 GG-GA-----LSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 256 ~~-~~-----~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
.. .. .......+ .+.+.+|+.+|+| ++++++.+.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~------------------~~~~e~Sa~~g~~-v~~lf~~l~~~~ 164 (170)
T cd04108 122 AQYALMEQDAIKLAAEMQ------------------AEYWSVSALSGEN-VREFFFRVAALT 164 (170)
T ss_pred ccccccHHHHHHHHHHcC------------------CeEEEEECCCCCC-HHHHHHHHHHHH
Confidence 21 00 01111111 1224468889999 999988886654
No 300
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=98.72 E-value=2.5e-06 Score=74.21 Aligned_cols=167 Identities=18% Similarity=0.191 Sum_probs=95.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchh------------HHHHHhhcc-----c--------CC
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA------------FDQLKQNAT-----K--------AK 156 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~------------~~~l~~~~~-----~--------~~ 156 (344)
+.|+|.|+.|-||||+..|++++|+..|++|.+|.|||-.-.+ .+.+++... . .+
T Consensus 2 r~iAiYGKGGIGKSTts~N~aAAla~~GkkVl~vGCDPKaDSTr~Llgg~~ipTVld~lre~~~~e~~~ledvi~~Gf~G 81 (278)
T COG1348 2 RQIAIYGKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVEDLELEDVIFTGFGG 81 (278)
T ss_pred ceEEEecCCCcCcchhHHHHHHHHHHcCCeEEEEcCCCCcchHHHHhCCcccchHHHHHHhcCccccCCHHHheeccCCc
Confidence 4699999999999999999999999999999999999943221 223332111 0 01
Q ss_pred c-------ceeccCCCCCHHHHHHHHHHHHH--hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc-
Q 019214 157 I-------PFYGSYTESDPVRIAVEGVETFK--KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG- 226 (344)
Q Consensus 157 v-------~~~~~~~~~~~~~~~~~~l~~~~--~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~- 226 (344)
+ |-.+.......+..+.+.++++. .++.|+|+.|..|---+-...+ =.+.-.+|.+++|.+...-
T Consensus 82 v~CVEsGGPepGvGCAGRGVitai~~Le~lgaf~~~~DvviyDVLGDVVCGGFAm-----PiReg~AdeiyIVtSge~Ma 156 (278)
T COG1348 82 VKCVESGGPEPGVGCAGRGVITAINLLEELGAFEEDLDVVIYDVLGDVVCGGFAM-----PIREGYADEIYIVTSGEMMA 156 (278)
T ss_pred eEEeecCCCCCCCCcccchHHHHHHHHHHhCCccccCCEEEEeccCceeecceee-----ehhcccCcEEEEEecCchHH
Confidence 1 11111222223444455555552 2356999999988532210000 0111247888888765421
Q ss_pred ----hhHHHHHHHHhcc--CCcCEEEeecCCCCCChhhHHHHHHHhCCCeEEE
Q 019214 227 ----QAAFDQAQAFKQS--VSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFI 273 (344)
Q Consensus 227 ----~~~~~~~~~~~~~--~~~~~lVinK~D~~~~~~~~~~~~~~~~~pv~~~ 273 (344)
.++..-...|... .+..++|.|.--.......+.......+.|+...
T Consensus 157 lYAANNI~kgi~k~a~~~~~rLgGiIcNsr~~~~e~e~v~~fa~~igt~li~~ 209 (278)
T COG1348 157 LYAANNIAKGIRKYAKTGGVRLGGIICNSRSVDRERELVEAFAERLGTQLIHF 209 (278)
T ss_pred HHHHHHHHHHHHHHhhcCCcceeeEEecCCCcccHHHHHHHHHHHhCCceEee
Confidence 1112222334332 3467899887653333334446666677776654
No 301
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.71 E-value=1.7e-07 Score=83.42 Aligned_cols=109 Identities=21% Similarity=0.255 Sum_probs=63.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHH
Q 019214 98 KGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE 177 (344)
Q Consensus 98 ~~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 177 (344)
..++.+|+++|++|+||||+++.|...+.. ..+.. .. ..+.+.. .
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~-----~~~~~-----------~~----g~i~i~~-~-------------- 80 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTK-----QNISD-----------IK----GPITVVT-G-------------- 80 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhccc-----Ccccc-----------cc----ccEEEEe-c--------------
Confidence 345689999999999999999999843211 11110 00 0011111 0
Q ss_pred HHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchh--HHHHHHHHhccCCc-CEEEeecCCCCC
Q 019214 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAFKQSVSV-GAVIVTKMDGHA 254 (344)
Q Consensus 178 ~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~--~~~~~~~~~~~~~~-~~lVinK~D~~~ 254 (344)
.+..+.++||||.. ..+ +.....+|.+++|+|++.+.. .......+.....+ ..+|+||+|...
T Consensus 81 ----~~~~i~~vDtPg~~-------~~~--l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~ 147 (225)
T cd01882 81 ----KKRRLTFIECPNDI-------NAM--IDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFK 147 (225)
T ss_pred ----CCceEEEEeCCchH-------HHH--HHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCC
Confidence 15677899999853 111 111235799999999986632 22333333322223 245899999864
No 302
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=98.71 E-value=7e-08 Score=85.57 Aligned_cols=153 Identities=12% Similarity=0.006 Sum_probs=82.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
....|+++|.+||||||++.++.. |.-.. .+....+..+.......
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~-----~~f~~----------------~~~~tig~~~~~~~~~~------------- 57 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLT-----GEFEK----------------KYEPTIGVEVHPLDFFT------------- 57 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhh-----CCCCC----------------ccCCccceeEEEEEEEE-------------
Confidence 346799999999999999998762 21100 00000111111100000
Q ss_pred HhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH---HHHHHhc--cCCcCEEEeecCCCCC
Q 019214 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ--SVSVGAVIVTKMDGHA 254 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~---~~~~~~~--~~~~~~lVinK~D~~~ 254 (344)
......+.+.||||..... .+... ....+|.+++|.|.+....... ....+.. ...+..+|.||+|+..
T Consensus 58 ~~~~~~l~i~Dt~G~~~~~-----~~~~~-~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~ 131 (219)
T PLN03071 58 NCGKIRFYCWDTAGQEKFG-----GLRDG-YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (219)
T ss_pred CCeEEEEEEEECCCchhhh-----hhhHH-HcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhh
Confidence 0014567899999975321 12111 1336789999999986532222 2222221 1234578899999853
Q ss_pred Ch--hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 255 KG--GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 255 ~~--~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
.. ..........+ .+.+.+|+++|+| ++++++++.+.+
T Consensus 132 ~~v~~~~~~~~~~~~------------------~~~~e~SAk~~~~-i~~~f~~l~~~~ 171 (219)
T PLN03071 132 RQVKAKQVTFHRKKN------------------LQYYEISAKSNYN-FEKPFLYLARKL 171 (219)
T ss_pred ccCCHHHHHHHHhcC------------------CEEEEcCCCCCCC-HHHHHHHHHHHH
Confidence 21 11111111101 1224578889999 999998887655
No 303
>PRK12739 elongation factor G; Reviewed
Probab=98.71 E-value=9.8e-08 Score=98.42 Aligned_cols=129 Identities=21% Similarity=0.134 Sum_probs=69.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchh--HHHHHhhcccCCcceeccCCCCCHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA--FDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE 177 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~--~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 177 (344)
+.+.|+++|.+|+|||||+++|....... .++.-++... .... .+.-.+..+..-....
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~-~~~~~v~~~~-~~~D~~~~E~~rgiti~~~~~~----------------- 67 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKS-HKIGEVHDGA-ATMDWMEQEQERGITITSAATT----------------- 67 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCc-cccccccCCc-cccCCChhHhhcCCCccceeEE-----------------
Confidence 45789999999999999999998543211 1111121100 0000 0000111111111000
Q ss_pred HHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH--HHHHHHHhccCCcCEEEeecCCCCC
Q 019214 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFKQSVSVGAVIVTKMDGHA 254 (344)
Q Consensus 178 ~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~--~~~~~~~~~~~~~~~lVinK~D~~~ 254 (344)
+...++.+.||||||... +..++ ......+|.+++|+|+..+... ............+..+++||+|...
T Consensus 68 -~~~~~~~i~liDTPG~~~----f~~e~--~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 68 -CFWKGHRINIIDTPGHVD----FTIEV--ERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIG 139 (691)
T ss_pred -EEECCEEEEEEcCCCHHH----HHHHH--HHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 112377889999999743 22222 2223357999999999876322 2233333322234578899999874
No 304
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=98.71 E-value=1.8e-08 Score=88.24 Aligned_cols=105 Identities=12% Similarity=0.025 Sum_probs=59.2
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH---HHHHHh---ccCCcCEEEeecCCCCCCh
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFK---QSVSVGAVIVTKMDGHAKG 256 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~---~~~~~~---~~~~~~~lVinK~D~~~~~ 256 (344)
.+.+.+.||+|..... .+.. .....+|.+++|.|.+....... ....+. ....+..+|.||+|+....
T Consensus 48 ~v~l~iwDtaGqe~~~-----~l~~-~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~ 121 (202)
T cd04120 48 KIRLQIWDTAGQERFN-----SITS-AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR 121 (202)
T ss_pred EEEEEEEeCCCchhhH-----HHHH-HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccccc
Confidence 3667899999974321 1211 12346899999999986532211 122222 1223457889999985321
Q ss_pred h---hH-HHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 257 G---GA-LSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 257 ~---~~-~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
. .. ...... . .....+.+|+++|+| ++++++++.+.+
T Consensus 122 ~v~~~~~~~~a~~-------------~----~~~~~~etSAktg~g-V~e~F~~l~~~~ 162 (202)
T cd04120 122 EISRQQGEKFAQQ-------------I----TGMRFCEASAKDNFN-VDEIFLKLVDDI 162 (202)
T ss_pred ccCHHHHHHHHHh-------------c----CCCEEEEecCCCCCC-HHHHHHHHHHHH
Confidence 1 11 111110 0 001234588999999 999998877644
No 305
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=98.71 E-value=1.3e-07 Score=78.89 Aligned_cols=115 Identities=23% Similarity=0.254 Sum_probs=68.7
Q ss_pred eEEEEEcCC-CCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhH------------H---------------HHHhhcc
Q 019214 102 SVIMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAF------------D---------------QLKQNAT 153 (344)
Q Consensus 102 ~ii~ivG~~-GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~------------~---------------~l~~~~~ 153 (344)
|+|+|+|+. |+||||++.+||..+++.|++|++|+.|.+.+... + .+..+..
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~ 80 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAALARKGKKVLLIDFDFFSPSLSRLLGIEPERGLSDLLYDKKSGDENLSERDLSDHIY 80 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS-HHHHHTTSSSSSSHHHHHTTSHC--C-HHHSHHHHHCE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCCCCcccccccccccchhhHhcCccccccchhhhhHHHHhe
Confidence 579999955 99999999999999999999999999998544311 1 1222211
Q ss_pred ---cCCcceeccCCCCCHHH-----HHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCC
Q 019214 154 ---KAKIPFYGSYTESDPVR-----IAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSS 224 (344)
Q Consensus 154 ---~~~v~~~~~~~~~~~~~-----~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~ 224 (344)
..++.+........... .....+..++. .||+||||+|+........ .....+|.+++|+.+.
T Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~li~~l~~-~yd~IivD~~~~~~~~~~~-------~~l~~~D~ii~v~~~~ 151 (157)
T PF13614_consen 81 SDAHDGLDLLPPPSSPEDLEELTPEDVEELIDALKE-HYDYIIVDLPSSLSNPDTQ-------AVLELADKIILVVRPD 151 (157)
T ss_dssp EESSTTEEEE--SSSSHHHHHHTSHHHHHHHHHHHH-HSSEEEEEEESTTTHTHHH-------HHHTTHSEEEEEEETT
T ss_pred eccCCCeEEecCCCCCCchhhcCHHHHHHHHHHHHH-cCCEEEEECcCCccHHHHH-------HHHHHCCEEEEEECCC
Confidence 12333333222222222 22333444444 8999999998876533211 0123478999998875
No 306
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=98.70 E-value=4.4e-08 Score=84.28 Aligned_cols=107 Identities=11% Similarity=0.048 Sum_probs=59.1
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHH---HHHHHHh---ccCCcCEEEeecCCCCCCh
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFK---QSVSVGAVIVTKMDGHAKG 256 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~---~~~~~~~---~~~~~~~lVinK~D~~~~~ 256 (344)
.+.+.+.||+|..... .+.. .....+|.+++|+|.+...... .....+. ....+ ++|.||+|+....
T Consensus 48 ~~~l~iwDt~G~~~~~-----~~~~-~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~ 120 (182)
T cd04128 48 EITFSIWDLGGQREFI-----NMLP-LVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADL 120 (182)
T ss_pred EEEEEEEeCCCchhHH-----HhhH-HHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccc
Confidence 3567899999975321 1211 1234689999999987653222 2222222 22233 6889999985211
Q ss_pred ----h-hHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 257 ----G-GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 257 ----~-~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
. ...+... .+..... .+.+.+|+++|+| ++++++.+.+.+
T Consensus 121 ~~~~~~~~~~~~~-------------~~a~~~~-~~~~e~SAk~g~~-v~~lf~~l~~~l 165 (182)
T cd04128 121 PPEEQEEITKQAR-------------KYAKAMK-APLIFCSTSHSIN-VQKIFKIVLAKA 165 (182)
T ss_pred cchhhhhhHHHHH-------------HHHHHcC-CEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 0 0111111 0100001 2345678999999 999999887644
No 307
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.70 E-value=2.3e-08 Score=90.26 Aligned_cols=109 Identities=16% Similarity=0.077 Sum_probs=60.1
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHhc------------cCCcCEEEe
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ------------SVSVGAVIV 247 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~~------------~~~~~~lVi 247 (344)
.+.+-|+||+|..... .++.. ....+|.+++|.|.+..... ......+.. ...+.++|.
T Consensus 47 ~~~l~I~Dt~G~~~~~-----~~~~~-~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivg 120 (247)
T cd04143 47 VYQLDILDTSGNHPFP-----AMRRL-SILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICG 120 (247)
T ss_pred EEEEEEEECCCChhhh-----HHHHH-HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEE
Confidence 3667799999974321 22221 23468999999998764221 111122211 123457889
Q ss_pred ecCCCCCChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 248 TKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 248 nK~D~~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
||+|+........+..... ... ....+.+.+|+++|.| ++++++.|.+..
T Consensus 121 NK~Dl~~~~~v~~~ei~~~------------~~~-~~~~~~~evSAktg~g-I~elf~~L~~~~ 170 (247)
T cd04143 121 NKADRDFPREVQRDEVEQL------------VGG-DENCAYFEVSAKKNSN-LDEMFRALFSLA 170 (247)
T ss_pred ECccchhccccCHHHHHHH------------HHh-cCCCEEEEEeCCCCCC-HHHHHHHHHHHh
Confidence 9999864211111111100 000 0012245688899999 999999998855
No 308
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=98.70 E-value=3.2e-08 Score=83.19 Aligned_cols=102 Identities=13% Similarity=0.047 Sum_probs=56.6
Q ss_pred CCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH---HHHH---HhccCCcCEEEeecCCCCCCh-
Q 019214 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQA---FKQSVSVGAVIVTKMDGHAKG- 256 (344)
Q Consensus 184 ~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~---~~~~---~~~~~~~~~lVinK~D~~~~~- 256 (344)
+.+.+.||+|..... . +.. .....+|.+++|.|.+....... .... ......+..+|.||.|+....
T Consensus 49 ~~l~i~D~~g~~~~~-~----~~~-~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~ 122 (161)
T cd04117 49 VRIQIWDTAGQERYQ-T----ITK-QYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQ 122 (161)
T ss_pred EEEEEEeCCCcHhHH-h----hHH-HHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccC
Confidence 456789999964321 1 111 11346899999999876422211 1221 211123457889999985321
Q ss_pred ---hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhh
Q 019214 257 ---GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (344)
Q Consensus 257 ---~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~ 310 (344)
..........+ .+.+.+|+++|.| +++++++|.+.
T Consensus 123 v~~~~~~~~~~~~~------------------~~~~e~Sa~~~~~-v~~~f~~l~~~ 160 (161)
T cd04117 123 VGDEQGNKLAKEYG------------------MDFFETSACTNSN-IKESFTRLTEL 160 (161)
T ss_pred CCHHHHHHHHHHcC------------------CEEEEEeCCCCCC-HHHHHHHHHhh
Confidence 11111111111 1224578889999 99998887653
No 309
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=98.70 E-value=1.3e-08 Score=87.03 Aligned_cols=118 Identities=15% Similarity=0.146 Sum_probs=60.5
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH----HHHHHhc--cCCcCEEEeecCCCCCCh
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQ--SVSVGAVIVTKMDGHAKG 256 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~----~~~~~~~--~~~~~~lVinK~D~~~~~ 256 (344)
.+.+.|.||+|..... .++.. ....+|.+++|.|.+....... ....+.. ...|.++|.||+|+....
T Consensus 48 ~~~l~i~Dt~G~~~~~-----~~~~~-~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~ 121 (175)
T cd01874 48 PYTLGLFDTAGQEDYD-----RLRPL-SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 121 (175)
T ss_pred EEEEEEEECCCccchh-----hhhhh-hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhCh
Confidence 3667899999985322 12111 2346899999999876532211 2222221 123557899999985432
Q ss_pred hhHHHHHHHhC-CCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHh
Q 019214 257 GGALSAVAATK-SPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (344)
Q Consensus 257 ~~~~~~~~~~~-~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~ 309 (344)
...+.+.... .+|. ...|+.+..-....+.+.+|+++|+| ++++++.+..
T Consensus 122 -~~~~~l~~~~~~~v~-~~~~~~~a~~~~~~~~~e~SA~tg~~-v~~~f~~~~~ 172 (175)
T cd01874 122 -STIEKLAKNKQKPIT-PETGEKLARDLKAVKYVECSALTQKG-LKNVFDEAIL 172 (175)
T ss_pred -hhHHHhhhccCCCcC-HHHHHHHHHHhCCcEEEEecCCCCCC-HHHHHHHHHH
Confidence 1111111100 0000 00001010000112345689999999 9999988765
No 310
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.68 E-value=2.1e-07 Score=85.38 Aligned_cols=149 Identities=15% Similarity=0.147 Sum_probs=76.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...|+++|.+|+||||+++.|. +..+......+.... .+......+..+......+
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~------~~~~~~~~~~~~~~~-----~~~~~T~~i~~~~~~i~~~------------- 59 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLF------NTKLIPSDYPPDPAE-----EHIDKTVEIKSSKAEIEEN------------- 59 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHH------cCCCccccCCCCccc-----cccCCceEEEEEEEEEEEC-------------
Confidence 4679999999999999999998 655543322110000 0000000111110000000
Q ss_pred hCCCCEEEEcCCCCCcchH------HHHHH--------HH---Hhhh-h----cCCcEEEEEEcCCc-c--hhHHHHHHH
Q 019214 181 KENCDLIIVDTSGRHKQEA------ALFEE--------MR---QVSE-A----TNPDLVIFVMDSSI-G--QAAFDQAQA 235 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~------~~~~~--------l~---~~~~-~----~~~d~illvvda~~-~--~~~~~~~~~ 235 (344)
.....+.++||||...... .+... +. .+.+ . ...|.++++++++. + ......+..
T Consensus 60 g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~ 139 (276)
T cd01850 60 GVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKR 139 (276)
T ss_pred CEEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 0024678999999754311 11110 10 1111 0 13578899998874 3 223455555
Q ss_pred HhccCCcCEEEeecCCCCCCh------hhHHHHHHHhCCCeEEEe
Q 019214 236 FKQSVSVGAVIVTKMDGHAKG------GGALSAVAATKSPVIFIG 274 (344)
Q Consensus 236 ~~~~~~~~~lVinK~D~~~~~------~~~~~~~~~~~~pv~~~~ 274 (344)
+.... +..+|+||+|..... ....+.+...++++....
T Consensus 140 l~~~v-~vi~VinK~D~l~~~e~~~~k~~i~~~l~~~~i~~~~~~ 183 (276)
T cd01850 140 LSKRV-NIIPVIAKADTLTPEELKEFKQRIMEDIEEHNIKIYKFP 183 (276)
T ss_pred HhccC-CEEEEEECCCcCCHHHHHHHHHHHHHHHHHcCCceECCC
Confidence 55433 457899999995522 122344555677766543
No 311
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.68 E-value=3.7e-08 Score=87.41 Aligned_cols=120 Identities=14% Similarity=0.086 Sum_probs=61.5
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHHHHH----HHhc--cCCcCEEEeecCCCCCCh
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQ----AFKQ--SVSVGAVIVTKMDGHAKG 256 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~~~~----~~~~--~~~~~~lVinK~D~~~~~ 256 (344)
.+.+.|.||+|..... .++.. ....+|.+++|.|.+.......... .... ...+.++|.||+|+....
T Consensus 48 ~v~L~iwDt~G~e~~~-----~l~~~-~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~ 121 (222)
T cd04173 48 RIELNMWDTSGSSYYD-----NVRPL-AYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDL 121 (222)
T ss_pred EEEEEEEeCCCcHHHH-----HHhHH-hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccch
Confidence 4567789999974321 22222 2457899999999886533222211 1111 123457889999986532
Q ss_pred hhHHHHHHHhC-CCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhh
Q 019214 257 GGALSAVAATK-SPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (344)
Q Consensus 257 ~~~~~~~~~~~-~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~ 310 (344)
.. ...+...+ .||.. ..|+.+.......+-+..|++++++.+.++++.+...
T Consensus 122 ~~-~~~~~~~~~~pIs~-e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~ 174 (222)
T cd04173 122 AT-LRELSKQRLIPVTH-EQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVA 174 (222)
T ss_pred hh-hhhhhhccCCccCH-HHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHH
Confidence 11 11111111 12211 0222221111112344578888873388888876663
No 312
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.67 E-value=2.4e-08 Score=97.42 Aligned_cols=66 Identities=21% Similarity=0.356 Sum_probs=39.0
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc---hh--HHHHHHHHhc-cCCcCEEEeecCCCCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG---QA--AFDQAQAFKQ-SVSVGAVIVTKMDGHA 254 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~---~~--~~~~~~~~~~-~~~~~~lVinK~D~~~ 254 (344)
++.+.|+||||.. .+...+ +.....+|.+++|+|++.+ .. .......... ...+..+|+||+|...
T Consensus 84 ~~~i~iiDtpGh~----~f~~~~--~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~ 155 (426)
T TIGR00483 84 KYEVTIVDCPGHR----DFIKNM--ITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVN 155 (426)
T ss_pred CeEEEEEECCCHH----HHHHHH--HhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccC
Confidence 6788999999963 222222 1223468999999999876 11 1111111111 1234467899999864
No 313
>PLN03110 Rab GTPase; Provisional
Probab=98.67 E-value=4.3e-08 Score=86.71 Aligned_cols=148 Identities=15% Similarity=0.067 Sum_probs=79.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCccee---ccCCCCCHHHHHHHHHHH
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFY---GSYTESDPVRIAVEGVET 178 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~---~~~~~~~~~~~~~~~l~~ 178 (344)
..|+++|++||||||+++.+. +.+... ...+ ..++.+. ....+
T Consensus 13 ~Ki~ivG~~~vGKStLi~~l~------~~~~~~-~~~~--------------t~g~~~~~~~v~~~~------------- 58 (216)
T PLN03110 13 FKIVLIGDSGVGKSNILSRFT------RNEFCL-ESKS--------------TIGVEFATRTLQVEG------------- 58 (216)
T ss_pred eEEEEECCCCCCHHHHHHHHh------cCCCCC-CCCC--------------ceeEEEEEEEEEECC-------------
Confidence 569999999999999999998 432211 1100 0111110 00000
Q ss_pred HHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHhc---cCCcCEEEeecCCC
Q 019214 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ---SVSVGAVIVTKMDG 252 (344)
Q Consensus 179 ~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~~---~~~~~~lVinK~D~ 252 (344)
..+.+.|.||||..... .+.. .....++.+++|.|.+..... ......+.. ...+..+|.||+|+
T Consensus 59 ---~~~~l~l~Dt~G~~~~~-----~~~~-~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl 129 (216)
T PLN03110 59 ---KTVKAQIWDTAGQERYR-----AITS-AYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDL 129 (216)
T ss_pred ---EEEEEEEEECCCcHHHH-----HHHH-HHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhc
Confidence 13567889999964321 1211 113467899999998754221 122222222 12345788999997
Q ss_pred CCCh---hhHHHHH-HHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 253 HAKG---GGALSAV-AATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 253 ~~~~---~~~~~~~-~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
.... ......+ ...+ .+.+.+|+..|.| ++++++.+.+.+
T Consensus 130 ~~~~~~~~~~~~~l~~~~~------------------~~~~e~SA~~g~~-v~~lf~~l~~~i 173 (216)
T PLN03110 130 NHLRSVAEEDGQALAEKEG------------------LSFLETSALEATN-VEKAFQTILLEI 173 (216)
T ss_pred ccccCCCHHHHHHHHHHcC------------------CEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 4321 1111111 1112 2344567778888 888887776544
No 314
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.66 E-value=4.8e-08 Score=84.10 Aligned_cols=120 Identities=15% Similarity=0.085 Sum_probs=59.4
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH----HHHHHhc--cCCcCEEEeecCCCCCCh
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQ--SVSVGAVIVTKMDGHAKG 256 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~----~~~~~~~--~~~~~~lVinK~D~~~~~ 256 (344)
.+.+.+.||+|.... ..++.. ....+|.+++|.|.+....... ....+.. ...+..+|.||.|+....
T Consensus 52 ~~~l~iwDtaG~e~~-----~~~~~~-~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~ 125 (182)
T cd04172 52 RIELSLWDTSGSPYY-----DNVRPL-SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDL 125 (182)
T ss_pred EEEEEEEECCCchhh-----Hhhhhh-hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcCh
Confidence 456789999997422 122221 2346899999999876533222 1222221 123457889999986433
Q ss_pred hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHh
Q 019214 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (344)
Q Consensus 257 ~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~ 309 (344)
+...+.......||. ...|+.+..-....+.+.+|+++|+|.++++++.+.+
T Consensus 126 ~~~~~~~~~~~~~v~-~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~ 177 (182)
T cd04172 126 TTLVELSNHRQTPVS-YDQGANMAKQIGAATYIECSALQSENSVRDIFHVATL 177 (182)
T ss_pred hhHHHHHhcCCCCCC-HHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHH
Confidence 222111110000110 0011111000001123457888888548887777655
No 315
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.66 E-value=1.5e-07 Score=87.86 Aligned_cols=29 Identities=10% Similarity=-0.052 Sum_probs=23.2
Q ss_pred CChHHHHHHHhCCCChhHHHH-HHHhhCCCC
Q 019214 285 FDVKPFVSRLLGMGDWSGFMD-KIHEVVPMD 314 (344)
Q Consensus 285 ~~~~~~is~~~g~g~i~~l~~-~i~~~~~~~ 314 (344)
+.+.+.+|+..+.+ +++|.+ .+.++++..
T Consensus 242 ~~~iI~iSA~~e~~-L~~L~~~~i~~~lPe~ 271 (318)
T cd01899 242 DEIVVPTSAEAELA-LRRAAKQGLIKYDPGD 271 (318)
T ss_pred CCeEEEEeCccccc-HHHHHHhhHHHhCCCC
Confidence 34567789999999 999998 699988654
No 316
>PLN03108 Rab family protein; Provisional
Probab=98.66 E-value=1e-07 Score=83.86 Aligned_cols=150 Identities=13% Similarity=0.035 Sum_probs=77.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
..|+++|++||||||+++.++ +.+.... .++. .+..+...... +..
T Consensus 7 ~kivivG~~gvGKStLi~~l~------~~~~~~~-~~~t--------------i~~~~~~~~i~-------------~~~ 52 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFT------DKRFQPV-HDLT--------------IGVEFGARMIT-------------IDN 52 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHH------hCCCCCC-CCCC--------------ccceEEEEEEE-------------ECC
Confidence 569999999999999999998 3322110 0000 00000000000 000
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHH---HHHHHHh---ccCCcCEEEeecCCCCCC
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFK---QSVSVGAVIVTKMDGHAK 255 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~---~~~~~~~---~~~~~~~lVinK~D~~~~ 255 (344)
..+.+-++||||..... .+. ......+|.+++|.|++...... .....+. ....+..+|.||+|+...
T Consensus 53 ~~i~l~l~Dt~G~~~~~-----~~~-~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~ 126 (210)
T PLN03108 53 KPIKLQIWDTAGQESFR-----SIT-RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126 (210)
T ss_pred EEEEEEEEeCCCcHHHH-----HHH-HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccc
Confidence 13456789999964211 111 11233678999999997642221 1122111 122345788999998542
Q ss_pred h----hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhh
Q 019214 256 G----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (344)
Q Consensus 256 ~----~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~ 310 (344)
. ..........+. +.+.+|+.+|.| ++++++++.+.
T Consensus 127 ~~~~~~~~~~~~~~~~~------------------~~~e~Sa~~~~~-v~e~f~~l~~~ 166 (210)
T PLN03108 127 RAVSTEEGEQFAKEHGL------------------IFMEASAKTAQN-VEEAFIKTAAK 166 (210)
T ss_pred cCCCHHHHHHHHHHcCC------------------EEEEEeCCCCCC-HHHHHHHHHHH
Confidence 1 111122222222 234467778888 88877665443
No 317
>PLN03126 Elongation factor Tu; Provisional
Probab=98.66 E-value=4e-07 Score=89.51 Aligned_cols=127 Identities=21% Similarity=0.179 Sum_probs=67.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccE--EeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPA--LVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE 177 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~--iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 177 (344)
+...++++|.+++|||||+++|...+..-+.+.. ....|.. .+.-..+.+..-.... .
T Consensus 80 ~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~----~~Er~rGiTi~~~~~~--~-------------- 139 (478)
T PLN03126 80 PHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAA----PEERARGITINTATVE--Y-------------- 139 (478)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCC----hhHHhCCeeEEEEEEE--E--------------
Confidence 3467999999999999999999965432111110 0001111 0011111111111000 0
Q ss_pred HHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch--hHHHHHHHHhc-cCCcCEEEeecCCCCC
Q 019214 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQ-SVSVGAVIVTKMDGHA 254 (344)
Q Consensus 178 ~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~--~~~~~~~~~~~-~~~~~~lVinK~D~~~ 254 (344)
..++..+.||||||+.. +...+ +.....+|.+++|+|+..+. ...+.+..... ..+..++++||+|...
T Consensus 140 --~~~~~~i~liDtPGh~~----f~~~~--~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~ 211 (478)
T PLN03126 140 --ETENRHYAHVDCPGHAD----YVKNM--ITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD 211 (478)
T ss_pred --ecCCcEEEEEECCCHHH----HHHHH--HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccC
Confidence 01266789999999743 33333 22233689999999998762 22222222222 2222356799999865
No 318
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=1.1e-06 Score=84.85 Aligned_cols=162 Identities=19% Similarity=0.169 Sum_probs=99.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHH
Q 019214 98 KGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE 177 (344)
Q Consensus 98 ~~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 177 (344)
..+|.+|.+.|.---|||||+-+|- +..|+-... ++-...+..+....+
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lR------ks~VAA~E~-------------GGITQhIGAF~V~~p------------ 198 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALR------KSSVAAGEA-------------GGITQHIGAFTVTLP------------ 198 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHh------hCceehhhc-------------CCccceeceEEEecC------------
Confidence 3477899999999999999999987 555542221 111112222221111
Q ss_pred HHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc--hhHHHHHHHHhccCCcCEEEeecCCCCCC
Q 019214 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QAAFDQAQAFKQSVSVGAVIVTKMDGHAK 255 (344)
Q Consensus 178 ~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~--~~~~~~~~~~~~~~~~~~lVinK~D~~~~ 255 (344)
.+-.+.|.||||... +..|++-- +...|.+++|+.+..| ....+.....+...-+.++.+||+|....
T Consensus 199 ----~G~~iTFLDTPGHaA-----F~aMRaRG-A~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a 268 (683)
T KOG1145|consen 199 ----SGKSITFLDTPGHAA-----FSAMRARG-ANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGA 268 (683)
T ss_pred ----CCCEEEEecCCcHHH-----HHHHHhcc-CccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCC
Confidence 156678999999843 33454322 2347999999988776 33344444333333344677999997543
Q ss_pred -hhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhh
Q 019214 256 -GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (344)
Q Consensus 256 -~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~ 310 (344)
.......+...|+++-.++ -.-..+.+|+++|+| ++.|.+.+.-.
T Consensus 269 ~pekv~~eL~~~gi~~E~~G---------GdVQvipiSAl~g~n-l~~L~eaill~ 314 (683)
T KOG1145|consen 269 NPEKVKRELLSQGIVVEDLG---------GDVQVIPISALTGEN-LDLLEEAILLL 314 (683)
T ss_pred CHHHHHHHHHHcCccHHHcC---------CceeEEEeecccCCC-hHHHHHHHHHH
Confidence 3445555665555443332 223457789999999 99998886543
No 319
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=98.65 E-value=1.7e-07 Score=82.03 Aligned_cols=66 Identities=23% Similarity=0.243 Sum_probs=38.1
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCC-cEEEEEEcCCcc-hhHHHHHHH----Hh-----ccCCcCEEEeecCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNP-DLVIFVMDSSIG-QAAFDQAQA----FK-----QSVSVGAVIVTKMD 251 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~-d~illvvda~~~-~~~~~~~~~----~~-----~~~~~~~lVinK~D 251 (344)
+..+.++||||.......... ....+ +.+++|+|++.. ....+.... +. ....+..++.||+|
T Consensus 47 ~~~~~l~D~pG~~~~~~~~~~------~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~D 120 (203)
T cd04105 47 GKKFRLVDVPGHPKLRDKLLE------TLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQD 120 (203)
T ss_pred CceEEEEECCCCHHHHHHHHH------HHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchh
Confidence 567889999998533211111 12234 899999999875 222221111 11 12234578899999
Q ss_pred CCC
Q 019214 252 GHA 254 (344)
Q Consensus 252 ~~~ 254 (344)
+..
T Consensus 121 l~~ 123 (203)
T cd04105 121 LFT 123 (203)
T ss_pred hcc
Confidence 854
No 320
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=98.65 E-value=2.8e-07 Score=82.80 Aligned_cols=149 Identities=19% Similarity=0.196 Sum_probs=90.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHH-----------HHHhhcccCCcceeccCCCCCH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFD-----------QLKQNATKAKIPFYGSYTESDP 168 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~-----------~l~~~~~~~~v~~~~~~~~~~~ 168 (344)
+..+.+++|--|+|||||++.++ ..++|++++++-...--.+.++ -...|....+-- ..+.-..+.
T Consensus 56 rIPvtIITGyLGaGKtTLLn~Il--~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGC-lCCtVk~~g 132 (391)
T KOG2743|consen 56 RIPVTIITGYLGAGKTTLLNYIL--TGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGC-LCCTVKDNG 132 (391)
T ss_pred ccceEEEEecccCChHHHHHHHH--ccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCe-EEEEecchH
Confidence 45678899999999999999987 3457899999876442222111 123333322211 122223445
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhc----CCcEEEEEEcCCcchhHHH-------HHHHHh
Q 019214 169 VRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEAT----NPDLVIFVMDSSIGQAAFD-------QAQAFK 237 (344)
Q Consensus 169 ~~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~----~~d~illvvda~~~~~~~~-------~~~~~~ 237 (344)
+.++.+.++ ++..+|+|++.|.|+..+.. +..+-++...+ .-|.++-|+|+......++ .-+++.
T Consensus 133 vraie~lvq--kkGkfD~IllETTGlAnPaP--ia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~ 208 (391)
T KOG2743|consen 133 VRAIENLVQ--KKGKFDHILLETTGLANPAP--IASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATR 208 (391)
T ss_pred HHHHHHHHh--cCCCcceEEEeccCCCCcHH--HHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHH
Confidence 555555555 56689999999999976542 22333333333 4567899999975422221 112333
Q ss_pred ccCCcCEEEeecCCCCCC
Q 019214 238 QSVSVGAVIVTKMDGHAK 255 (344)
Q Consensus 238 ~~~~~~~lVinK~D~~~~ 255 (344)
+..-.+.+|+||.|+...
T Consensus 209 QiA~AD~II~NKtDli~~ 226 (391)
T KOG2743|consen 209 QIALADRIIMNKTDLVSE 226 (391)
T ss_pred HHhhhheeeeccccccCH
Confidence 333346889999999876
No 321
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.65 E-value=4.6e-08 Score=84.80 Aligned_cols=121 Identities=13% Similarity=0.056 Sum_probs=61.7
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHHH----HHHHhc--cCCcCEEEeecCCCCCCh
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ----AQAFKQ--SVSVGAVIVTKMDGHAKG 256 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~~----~~~~~~--~~~~~~lVinK~D~~~~~ 256 (344)
.+.+-+.||||..... .+... ....+|.+++|.|.+........ ...+.. ...|..+|.||.|+....
T Consensus 50 ~~~l~i~Dt~G~e~~~-----~l~~~-~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~ 123 (191)
T cd01875 50 TVSLNLWDTAGQEEYD-----RLRTL-SYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDA 123 (191)
T ss_pred EEEEEEEECCCchhhh-----hhhhh-hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcCh
Confidence 4567899999984321 12221 13468999999998764322111 111211 123457889999985432
Q ss_pred hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 257 ~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
.. .+.....+........|+.+..-....+.+.+|+++|+| ++++++.+.+.+
T Consensus 124 ~~-~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~-v~e~f~~l~~~~ 176 (191)
T cd01875 124 DT-LKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDG-VKEVFAEAVRAV 176 (191)
T ss_pred hh-HHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCC-HHHHHHHHHHHH
Confidence 11 111111110000000011110000111345589999999 999999988754
No 322
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.65 E-value=1.7e-07 Score=93.34 Aligned_cols=141 Identities=18% Similarity=0.188 Sum_probs=71.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCc---CcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT---FRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGV 176 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~---~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l 176 (344)
+.+.++++|.+|+||||++.+|......- .+..-|..+. .....+. +.....++.+.....
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i-~~~g~v~~~g~~~~t~~D~~---~~E~~rgisi~~~~~------------ 73 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAI-QTAGAVKGRGSQRHAKSDWM---EMEKQRGISITTSVM------------ 73 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCc-cccceeccccccccccCCCC---HHHHhcCCcEEEEEE------------
Confidence 44789999999999999999997432110 1111122110 0000010 111111222211000
Q ss_pred HHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH--HHHHHHHhccCCcCEEEeecCCCCC
Q 019214 177 ETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFKQSVSVGAVIVTKMDGHA 254 (344)
Q Consensus 177 ~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~--~~~~~~~~~~~~~~~lVinK~D~~~ 254 (344)
.+...++.+.++||||..... ..... ....+|.+++|+|++.+... ............+..+++||+|...
T Consensus 74 -~~~~~~~~inliDTPG~~df~----~~~~~--~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 74 -QFPYRDCLVNLLDTPGHEDFS----EDTYR--TLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDI 146 (527)
T ss_pred -EEeeCCeEEEEEECCChhhHH----HHHHH--HHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccC
Confidence 011237888999999984322 11111 12358999999999876221 2222222222335688899999854
Q ss_pred -ChhhHHHHH
Q 019214 255 -KGGGALSAV 263 (344)
Q Consensus 255 -~~~~~~~~~ 263 (344)
....+++.+
T Consensus 147 ~~~~~ll~~i 156 (527)
T TIGR00503 147 RDPLELLDEV 156 (527)
T ss_pred CCHHHHHHHH
Confidence 333344333
No 323
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.64 E-value=5.7e-08 Score=85.71 Aligned_cols=119 Identities=16% Similarity=0.249 Sum_probs=63.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHhC
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 182 (344)
.|+++|++|+||||+.|.|. |.++.-...... + .+ ..+..... . ..
T Consensus 2 ~IlllG~tGsGKSs~~N~il------g~~~f~~~~~~~---------~-~t-~~~~~~~~-~----------------~~ 47 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSIL------GKEVFKSGSSAK---------S-VT-QECQKYSG-E----------------VD 47 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHH------TSS-SS--TTTS---------S----SS-EEEEE-E----------------ET
T ss_pred EEEEECCCCCCHHHHHHHHh------cccceeeccccC---------C-cc-cccceeee-e----------------ec
Confidence 48899999999999999998 877632221000 0 00 01111100 0 12
Q ss_pred CCCEEEEcCCCCCcc---hHHHHHHHHHhhh--hcCCcEEEEEEcCCcc-hhHHHHHH----HHhcc-CCcCEEEeecCC
Q 019214 183 NCDLIIVDTSGRHKQ---EAALFEEMRQVSE--ATNPDLVIFVMDSSIG-QAAFDQAQ----AFKQS-VSVGAVIVTKMD 251 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~---~~~~~~~l~~~~~--~~~~d~illvvda~~~-~~~~~~~~----~~~~~-~~~~~lVinK~D 251 (344)
+..+.+|||||...+ +.....++..... ...++.+++|++...- ......+. .|... .....+|+|..|
T Consensus 48 g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d 127 (212)
T PF04548_consen 48 GRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEIWKHTIVVFTHAD 127 (212)
T ss_dssp TEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGG
T ss_pred ceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHHHhHhhHHhhhcc
Confidence 677899999998543 2344444433222 2357899999998732 12222222 23221 233578899998
Q ss_pred CCCC
Q 019214 252 GHAK 255 (344)
Q Consensus 252 ~~~~ 255 (344)
....
T Consensus 128 ~~~~ 131 (212)
T PF04548_consen 128 ELED 131 (212)
T ss_dssp GGTT
T ss_pred cccc
Confidence 7554
No 324
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.64 E-value=1.9e-07 Score=83.26 Aligned_cols=172 Identities=16% Similarity=0.166 Sum_probs=88.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
.+-.+.++|.+|+|||||+|+|- +..+.-|+. - ..+.++... ...
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF------~~~~~~v~~-----------v-------------g~~t~~~~~-----~~~ 82 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALF------QGEVKEVSK-----------V-------------GVGTDITTR-----LRL 82 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHH------hccCceeee-----------c-------------ccCCCchhh-----HHh
Confidence 44567799999999999999997 333333331 0 000000000 000
Q ss_pred HhCCCCEEEEcCCCCCcchHHHHHHHHHhhh-hcCCcEEEEEEcCCcc--hhHHHHHHHH--hccCCcCEEEeecCCCCC
Q 019214 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSE-ATNPDLVIFVMDSSIG--QAAFDQAQAF--KQSVSVGAVIVTKMDGHA 254 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~-~~~~d~illvvda~~~--~~~~~~~~~~--~~~~~~~~lVinK~D~~~ 254 (344)
.-++--++|.||||.......--+.-+.+.. ....|++++++++... ....+..... ........+++|.+|.+.
T Consensus 83 ~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~ 162 (296)
T COG3596 83 SYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAE 162 (296)
T ss_pred hccccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhc
Confidence 1123456899999997643211111111222 2357899999998643 1122222211 111145688999999865
Q ss_pred Ch-----h------hHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCCCc
Q 019214 255 KG-----G------GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQ 315 (344)
Q Consensus 255 ~~-----~------~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~~~ 315 (344)
.. + .......+.- -+.++ -+.+..|.++.+...+.| ++.|+..+-+.++...
T Consensus 163 p~~~W~~~~~~p~~a~~qfi~~k~-----~~~~~---~~q~V~pV~~~~~r~~wg-l~~l~~ali~~lp~e~ 225 (296)
T COG3596 163 PGREWDSAGHQPSPAIKQFIEEKA-----EALGR---LFQEVKPVVAVSGRLPWG-LKELVRALITALPVEA 225 (296)
T ss_pred cccccccccCCCCHHHHHHHHHHH-----HHHHH---HHhhcCCeEEeccccCcc-HHHHHHHHHHhCcccc
Confidence 52 0 0111110000 00001 112334455556667788 9999999888887554
No 325
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=98.64 E-value=1.9e-07 Score=80.78 Aligned_cols=104 Identities=14% Similarity=0.051 Sum_probs=60.3
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHH---HHHHHHhc--cCCcCEEEeecCCCCCC--
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQ--SVSVGAVIVTKMDGHAK-- 255 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~---~~~~~~~~--~~~~~~lVinK~D~~~~-- 255 (344)
.+.+.+.||||..... .+.. .....+|.+++|.|.+...... .....+.. ...+.++|.||.|+...
T Consensus 54 ~~~l~iwDt~G~~~~~-----~l~~-~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~ 127 (189)
T cd04121 54 RVKLQLWDTSGQGRFC-----TIFR-SYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQ 127 (189)
T ss_pred EEEEEEEeCCCcHHHH-----HHHH-HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccC
Confidence 3566789999984322 1211 1234789999999998653222 22222221 12345788999998532
Q ss_pred --hhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 256 --GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 256 --~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
...........+ .+.+.+|+++|.| ++++++++.+.+
T Consensus 128 v~~~~~~~~a~~~~------------------~~~~e~SAk~g~~-V~~~F~~l~~~i 166 (189)
T cd04121 128 VATEQAQAYAERNG------------------MTFFEVSPLCNFN-ITESFTELARIV 166 (189)
T ss_pred CCHHHHHHHHHHcC------------------CEEEEecCCCCCC-HHHHHHHHHHHH
Confidence 111112222111 1345578899999 999999887644
No 326
>PRK12740 elongation factor G; Reviewed
Probab=98.63 E-value=2.5e-07 Score=95.24 Aligned_cols=83 Identities=17% Similarity=0.144 Sum_probs=47.9
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH--HHHHHHHhccCCcCEEEeecCCCCCCh-hh
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFKQSVSVGAVIVTKMDGHAKG-GG 258 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~--~~~~~~~~~~~~~~~lVinK~D~~~~~-~~ 258 (344)
.++++.+|||||..... .++.. ....+|.+++|+|++.+... ............+..+|+||+|..... ..
T Consensus 58 ~~~~i~liDtPG~~~~~----~~~~~--~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~ 131 (668)
T PRK12740 58 KGHKINLIDTPGHVDFT----GEVER--ALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGADFFR 131 (668)
T ss_pred CCEEEEEEECCCcHHHH----HHHHH--HHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHH
Confidence 37899999999985321 12211 12358999999999876322 222222222223457899999986432 23
Q ss_pred HHHHHH-HhCCCe
Q 019214 259 ALSAVA-ATKSPV 270 (344)
Q Consensus 259 ~~~~~~-~~~~pv 270 (344)
..+.+. ..+.|+
T Consensus 132 ~~~~l~~~l~~~~ 144 (668)
T PRK12740 132 VLAQLQEKLGAPV 144 (668)
T ss_pred HHHHHHHHHCCCc
Confidence 333333 345544
No 327
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.63 E-value=4.3e-08 Score=84.08 Aligned_cols=120 Identities=13% Similarity=0.090 Sum_probs=58.6
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH----HHHHHhc--cCCcCEEEeecCCCCCCh
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQ--SVSVGAVIVTKMDGHAKG 256 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~----~~~~~~~--~~~~~~lVinK~D~~~~~ 256 (344)
.+.+.+.||||..... .+... ....+|.+++|.|.+....... ....+.. ...+..+|.||.|+....
T Consensus 48 ~~~l~iwDt~G~~~~~-----~~~~~-~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~ 121 (178)
T cd04131 48 RIELSLWDTSGSPYYD-----NVRPL-CYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDL 121 (178)
T ss_pred EEEEEEEECCCchhhh-----hcchh-hcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcCh
Confidence 4567899999974221 12111 2346899999999876532222 1222221 123457889999985432
Q ss_pred hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHh
Q 019214 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (344)
Q Consensus 257 ~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~ 309 (344)
+...+.......||.. ..|+.+..-....+.+.+|+++|++.+++++..+-+
T Consensus 122 ~~~~~~~~~~~~~v~~-~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~ 173 (178)
T cd04131 122 STLMELSHQRQAPVSY-EQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATM 173 (178)
T ss_pred hHHHHHHhcCCCCCCH-HHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHH
Confidence 2211111100011110 011111100011123557888888328888877665
No 328
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.62 E-value=5.7e-08 Score=81.46 Aligned_cols=31 Identities=19% Similarity=0.265 Sum_probs=26.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeec
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~ 137 (344)
...++++|+|||||||++|+|. |.+.+.+..
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~------~~~~~~~~~ 132 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLR------SKKVCKVAP 132 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHh------cCCceeeCC
Confidence 4578899999999999999999 877776665
No 329
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.62 E-value=4.9e-08 Score=87.15 Aligned_cols=121 Identities=14% Similarity=0.085 Sum_probs=60.6
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH----HHHHHhc--cCCcCEEEeecCCCCCCh
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQ--SVSVGAVIVTKMDGHAKG 256 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~----~~~~~~~--~~~~~~lVinK~D~~~~~ 256 (344)
.+.+.|.||+|..... .+.. .....+|.+++|.|.+....... ....+.. ...+.++|.||+|+....
T Consensus 60 ~v~l~iwDTaG~e~~~-----~~~~-~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~ 133 (232)
T cd04174 60 RVELSLWDTSGSPYYD-----NVRP-LCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDL 133 (232)
T ss_pred EEEEEEEeCCCchhhH-----HHHH-HHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccccc
Confidence 4667899999974221 1221 12347899999999986533221 1222221 123457889999985432
Q ss_pred hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCC-CChhHHHHHHHhhC
Q 019214 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGM-GDWSGFMDKIHEVV 311 (344)
Q Consensus 257 ~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~-g~i~~l~~~i~~~~ 311 (344)
+...+.......+|. ...|+.+..-....+.+.+|+++|+ | ++++++.+....
T Consensus 134 ~~~~~l~~~~~~~Vs-~~e~~~~a~~~~~~~~~EtSAktg~~~-V~e~F~~~~~~~ 187 (232)
T cd04174 134 STLMELSNQKQAPIS-YEQGCALAKQLGAEVYLECSAFTSEKS-IHSIFRSASLLC 187 (232)
T ss_pred chhhhhccccCCcCC-HHHHHHHHHHcCCCEEEEccCCcCCcC-HHHHHHHHHHHH
Confidence 221110000000000 0001111000011123458999997 7 999888876543
No 330
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.57 E-value=1.5e-07 Score=81.27 Aligned_cols=104 Identities=12% Similarity=0.089 Sum_probs=56.8
Q ss_pred CCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH----HHHHHhc--cCCcCEEEeecCCCCCChh
Q 019214 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQ--SVSVGAVIVTKMDGHAKGG 257 (344)
Q Consensus 184 ~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~----~~~~~~~--~~~~~~lVinK~D~~~~~~ 257 (344)
..+.+.||+|...... +.. .....+|.++++.+.+....... ....+.. ...+..+|.||+|+.....
T Consensus 49 ~~l~i~Dt~g~~~~~~-----~~~-~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~ 122 (187)
T cd04129 49 VQLALWDTAGQEEYER-----LRP-LSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAV 122 (187)
T ss_pred EEEEEEECCCChhccc-----cch-hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcc
Confidence 4567889999743211 111 11345788888888765422211 1222211 1234578899999743210
Q ss_pred --------------hHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 258 --------------GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 258 --------------~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
........ + ...+.+.+|+++|+| ++++++.+.+..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~----------------~-~~~~~~e~Sa~~~~~-v~~~f~~l~~~~ 172 (187)
T cd04129 123 AKEEYRTQRFVPIQQGKRVAKE----------------I-GAKKYMECSALTGEG-VDDVFEAATRAA 172 (187)
T ss_pred cccccccCCcCCHHHHHHHHHH----------------h-CCcEEEEccCCCCCC-HHHHHHHHHHHH
Confidence 00000110 0 011345689999999 999999988654
No 331
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.57 E-value=2.7e-07 Score=78.67 Aligned_cols=114 Identities=24% Similarity=0.359 Sum_probs=58.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
..+.++||+|+|||++...|.. |..+.-++. +. .++.+ .... .
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~-----~~~~~T~tS----------~e-----~n~~~-~~~~----------------~ 46 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVN-----GKTVPTVTS----------ME-----NNIAY-NVNN----------------S 46 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHH-----SS---B-------------SS-----EEEEC-CGSS----------------T
T ss_pred ceEEEEcCCCCCHHHHHHHHhc-----CCcCCeecc----------cc-----CCceE-Eeec----------------C
Confidence 5799999999999999999994 322211111 00 11110 0000 1
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc-hhHHHHHHHH---------hccCCcCEEEeecCC
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG-QAAFDQAQAF---------KQSVSVGAVIVTKMD 251 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~-~~~~~~~~~~---------~~~~~~~~lVinK~D 251 (344)
.+..+.+||+||...-...+...+. ....+..++||+|++.. .+..+.++.+ .....+..++.||.|
T Consensus 47 ~~~~~~lvD~PGH~rlr~~~~~~~~---~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~D 123 (181)
T PF09439_consen 47 KGKKLRLVDIPGHPRLRSKLLDELK---YLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQD 123 (181)
T ss_dssp CGTCECEEEETT-HCCCHHHHHHHH---HHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TT
T ss_pred CCCEEEEEECCCcHHHHHHHHHhhh---chhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcc
Confidence 1456789999998654444444432 22235689999999753 2222222211 112234467799999
Q ss_pred CCCC
Q 019214 252 GHAK 255 (344)
Q Consensus 252 ~~~~ 255 (344)
....
T Consensus 124 l~~A 127 (181)
T PF09439_consen 124 LFTA 127 (181)
T ss_dssp STT-
T ss_pred cccc
Confidence 8653
No 332
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=98.56 E-value=9.8e-08 Score=91.97 Aligned_cols=174 Identities=16% Similarity=0.172 Sum_probs=102.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
+-+.++|+..---|||||+-+|.... | .++.+.......+.+.- ....|+.+-..... +.+-
T Consensus 59 ~iRNfsIIAHVDHGKSTLaDrLLe~t---g----~i~~~~~q~q~LDkl~v-ERERGITIkaQtas----------ify~ 120 (650)
T KOG0462|consen 59 NIRNFSIIAHVDHGKSTLADRLLELT---G----TIDNNIGQEQVLDKLQV-ERERGITIKAQTAS----------IFYK 120 (650)
T ss_pred hccceEEEEEecCCcchHHHHHHHHh---C----CCCCCCchhhhhhhhhh-hhhcCcEEEeeeeE----------EEEE
Confidence 44678999899999999999988433 2 23333222222222211 11223333211110 0000
Q ss_pred HhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHhccCCcCEEEeecCCCCCC-
Q 019214 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQSVSVGAVIVTKMDGHAK- 255 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~~~~~~~~lVinK~D~~~~- 255 (344)
....|-+-+|||||......+.. +.+ ..++-+++|+||+.|..+ .....+|...+.+ +.|+||+|....
T Consensus 121 ~~~~ylLNLIDTPGHvDFs~EVs---Rsl---aac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~i-IpVlNKIDlp~ad 193 (650)
T KOG0462|consen 121 DGQSYLLNLIDTPGHVDFSGEVS---RSL---AACDGALLVVDASQGVQAQTVANFYLAFEAGLAI-IPVLNKIDLPSAD 193 (650)
T ss_pred cCCceEEEeecCCCcccccceeh---ehh---hhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeE-EEeeeccCCCCCC
Confidence 01247788999999876543321 112 236889999999998443 3345566655554 778999998543
Q ss_pred hhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCC
Q 019214 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (344)
Q Consensus 256 ~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~ 313 (344)
...+...+.. +-+ .+.++.+++|+++|.| +++++++|-+.++-
T Consensus 194 pe~V~~q~~~-------------lF~-~~~~~~i~vSAK~G~~-v~~lL~AII~rVPp 236 (650)
T KOG0462|consen 194 PERVENQLFE-------------LFD-IPPAEVIYVSAKTGLN-VEELLEAIIRRVPP 236 (650)
T ss_pred HHHHHHHHHH-------------Hhc-CCccceEEEEeccCcc-HHHHHHHHHhhCCC
Confidence 3333333321 111 2334678899999999 99999999998863
No 333
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=5.3e-07 Score=87.24 Aligned_cols=163 Identities=20% Similarity=0.150 Sum_probs=95.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHH
Q 019214 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (344)
Q Consensus 99 ~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 178 (344)
.++.++++.|.---|||||+-++= +.+|+--.. -..+...|. +.......
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR------~t~Va~~Ea-----------GGITQhIGA--~~v~~~~~----------- 52 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIR------KTNVAAGEA-----------GGITQHIGA--YQVPLDVI----------- 52 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHh------cCccccccC-----------CceeeEeee--EEEEeccC-----------
Confidence 366899999999999999999986 555442111 001111111 11111000
Q ss_pred HHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc--hhHHHHHHHHhccCCcCEEEeecCCCCCC-
Q 019214 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QAAFDQAQAFKQSVSVGAVIVTKMDGHAK- 255 (344)
Q Consensus 179 ~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~--~~~~~~~~~~~~~~~~~~lVinK~D~~~~- 255 (344)
....+.||||||+.. +-.|++-- ..-+|.+++|+++..| ....+.....+...-|..+.+||+|....
T Consensus 53 ---~~~~itFiDTPGHeA-----Ft~mRaRG-a~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~n 123 (509)
T COG0532 53 ---KIPGITFIDTPGHEA-----FTAMRARG-ASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEAN 123 (509)
T ss_pred ---CCceEEEEcCCcHHH-----HHHHHhcC-CccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCC
Confidence 135678999999843 22343222 2247999999999877 33444444444433455777999998743
Q ss_pred hhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhh
Q 019214 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (344)
Q Consensus 256 ~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~ 310 (344)
.......+.+.|+..- .+........+|+++|+| +++|++.|.-.
T Consensus 124 p~~v~~el~~~gl~~E---------~~gg~v~~VpvSA~tg~G-i~eLL~~ill~ 168 (509)
T COG0532 124 PDKVKQELQEYGLVPE---------EWGGDVIFVPVSAKTGEG-IDELLELILLL 168 (509)
T ss_pred HHHHHHHHHHcCCCHh---------hcCCceEEEEeeccCCCC-HHHHHHHHHHH
Confidence 2334444444432111 111113456789999999 99999887543
No 334
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.54 E-value=1.6e-07 Score=85.58 Aligned_cols=101 Identities=19% Similarity=0.088 Sum_probs=53.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHhCC
Q 019214 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKEN 183 (344)
Q Consensus 104 i~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~ 183 (344)
++++|.|||||||++|+|+ |.++ .++. .+++++....-..... ......+......-+.-.
T Consensus 1 igivG~PN~GKSTLfn~Lt------~~~~-~~~n-----------~pftTi~p~~g~v~v~-d~r~~~l~~~~~~~k~~~ 61 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALT------KAGA-EAAN-----------YPFCTIEPNVGIVPVP-DERLDKLAEIVKPKKIVP 61 (274)
T ss_pred CeEeCCCCCcHHHHHHHHh------CCCC-cccc-----------ccccchhceeeeEEec-cchhhhHHHHhCCceeee
Confidence 5789999999999999999 8777 4444 3444432211111000 000111100000000012
Q ss_pred CCEEEEcCCCCCcchHHHHHHH--HHhhhhcCCcEEEEEEcCC
Q 019214 184 CDLIIVDTSGRHKQEAALFEEM--RQVSEATNPDLVIFVMDSS 224 (344)
Q Consensus 184 ~d~vlIDT~G~~~~~~~~~~~l--~~~~~~~~~d~illvvda~ 224 (344)
..+.++|+||........ +.+ +.+.....+|.+++|+|+.
T Consensus 62 ~~i~lvD~pGl~~~a~~~-~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 62 ATIEFVDIAGLVKGASKG-EGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred eEEEEEECCCcCCCCchh-hHHHHHHHHHHHhCCEEEEEEeCc
Confidence 358899999986443211 111 1223345789999999974
No 335
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.54 E-value=9.7e-08 Score=74.91 Aligned_cols=139 Identities=19% Similarity=0.168 Sum_probs=78.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
+.++++|+.|+||||++++|- |..+.- -...-+.+
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~------G~~~ly-----------------kKTQAve~---------------------- 36 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLY------GNDTLY-----------------KKTQAVEF---------------------- 36 (148)
T ss_pred ceeEEecccccCchhHHHHhh------cchhhh-----------------cccceeec----------------------
Confidence 569999999999999999998 653320 00011111
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHH--HHHHHHhccCCcCEEEeecCCCCCCh--h
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF--DQAQAFKQSVSVGAVIVTKMDGHAKG--G 257 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~--~~~~~~~~~~~~~~lVinK~D~~~~~--~ 257 (344)
.|--.|||||-.-....+...+. .....+|.+++|..+..+.... .....+. ++.+-|+||+|+++.. .
T Consensus 37 --~d~~~IDTPGEy~~~~~~Y~aL~--tt~~dadvi~~v~~and~~s~f~p~f~~~~~---k~vIgvVTK~DLaed~dI~ 109 (148)
T COG4917 37 --NDKGDIDTPGEYFEHPRWYHALI--TTLQDADVIIYVHAANDPESRFPPGFLDIGV---KKVIGVVTKADLAEDADIS 109 (148)
T ss_pred --cCccccCCchhhhhhhHHHHHHH--HHhhccceeeeeecccCccccCCcccccccc---cceEEEEecccccchHhHH
Confidence 12236899996533333322221 2233578888888876553221 1222222 2346678999998532 2
Q ss_pred hHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhh
Q 019214 258 GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (344)
Q Consensus 258 ~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~ 310 (344)
....++.+.| ..+.+.+|+....| +++|.+.+...
T Consensus 110 ~~~~~L~eaG-----------------a~~IF~~s~~d~~g-v~~l~~~L~~~ 144 (148)
T COG4917 110 LVKRWLREAG-----------------AEPIFETSAVDNQG-VEELVDYLASL 144 (148)
T ss_pred HHHHHHHHcC-----------------CcceEEEeccCccc-HHHHHHHHHhh
Confidence 2234444333 23444556666677 88877776554
No 336
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=98.54 E-value=1.2e-06 Score=73.95 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHHHHHHHHcCCccEEe
Q 019214 110 QGSGKTTTCTKYAYYHQKKGWKPALV 135 (344)
Q Consensus 110 ~GvGKTTl~~~La~~l~~~g~~v~iv 135 (344)
+|+||||++.+|+..|.++|++|+++
T Consensus 7 ~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 7 TGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 59999999999999999999999986
No 337
>PTZ00258 GTP-binding protein; Provisional
Probab=98.53 E-value=2.9e-07 Score=87.76 Aligned_cols=104 Identities=16% Similarity=0.038 Sum_probs=56.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...|+++|.|||||||++|+|+ +.++ .++. .+++++....-.... .......+.......+
T Consensus 21 ~~kvgIVG~PNvGKSTLfnaLt------~~~~-~v~n-----------~pftTi~p~~g~v~~-~d~r~~~l~~~~~~~~ 81 (390)
T PTZ00258 21 NLKMGIVGLPNVGKSTTFNALC------KQQV-PAEN-----------FPFCTIDPNTARVNV-PDERFDWLCKHFKPKS 81 (390)
T ss_pred CcEEEEECCCCCChHHHHHHHh------cCcc-cccC-----------CCCCcccceEEEEec-ccchhhHHHHHcCCcc
Confidence 3569999999999999999998 7765 3443 334443221111100 0111111111010001
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHHH--HHhhhhcCCcEEEEEEcCC
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEEM--RQVSEATNPDLVIFVMDSS 224 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~l--~~~~~~~~~d~illvvda~ 224 (344)
.-+..+.++||||+....... +.+ +.+.....+|.+++|+|+.
T Consensus 82 ~~~aqi~lvDtpGLv~ga~~g-~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 82 IVPAQLDITDIAGLVKGASEG-EGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cCCCCeEEEECCCcCcCCcch-hHHHHHHHHHHHHCCEEEEEEeCC
Confidence 114568999999986432211 111 1233345789999999984
No 338
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.51 E-value=1e-06 Score=86.15 Aligned_cols=66 Identities=18% Similarity=0.294 Sum_probs=39.8
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch---------hHHHHHHHHhc-cCCcCEEEeecCC
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ---------AAFDQAQAFKQ-SVSVGAVIVTKMD 251 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~---------~~~~~~~~~~~-~~~~~~lVinK~D 251 (344)
.++.+.||||||.. ++...+. .....+|.+++|+|+..+. ...+....... ..+..++++||+|
T Consensus 83 ~~~~i~liDtPGh~----df~~~~~--~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD 156 (447)
T PLN00043 83 TKYYCTVIDAPGHR----DFIKNMI--TGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 156 (447)
T ss_pred CCEEEEEEECCCHH----HHHHHHH--hhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEccc
Confidence 36778999999974 3433432 2234689999999998651 22222221111 2233366799999
Q ss_pred CC
Q 019214 252 GH 253 (344)
Q Consensus 252 ~~ 253 (344)
..
T Consensus 157 ~~ 158 (447)
T PLN00043 157 AT 158 (447)
T ss_pred CC
Confidence 75
No 339
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.50 E-value=4.4e-06 Score=82.03 Aligned_cols=163 Identities=13% Similarity=0.085 Sum_probs=88.2
Q ss_pred eEEEEEcCC-CCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 102 SVIMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 102 ~ii~ivG~~-GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
+.+.|+|.. ||||||++..|+..|+++|++|....++|...... .+...+ +.+.............+.+.+..+
T Consensus 4 ~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~Gpd~~d~~-~~~~~~---g~~~~~ld~~~~~~~~v~~~~~~~- 78 (451)
T PRK01077 4 PALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVGPDYIDPA-YHTAAT---GRPSRNLDSWMMGEELVRALFARA- 78 (451)
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecCCCcccHH-HHHHHh---CCCcccCCceeCCHHHHHHHHHHh-
Confidence 347777764 99999999999999999999999988865432221 111111 111100000000112334444443
Q ss_pred hCCCCEEEEcCCCCC-cc-----hHHHHHHHHHhhhhcCCcEEEEEEcCCcch-hHHHH---HHHHhccCCcCEEEeecC
Q 019214 181 KENCDLIIVDTSGRH-KQ-----EAALFEEMRQVSEATNPDLVIFVMDSSIGQ-AAFDQ---AQAFKQSVSVGAVIVTKM 250 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~-~~-----~~~~~~~l~~~~~~~~~d~illvvda~~~~-~~~~~---~~~~~~~~~~~~lVinK~ 250 (344)
..++|+++|+.+|-. .. ......+ +..... -.+++|+|+.... ..... ...+.....+.++|+||+
T Consensus 79 ~~~~D~vlVEGagGl~~g~~~~~~~~s~ad---iA~~l~-~pviLV~~~~~~~~~~a~l~~~~~~~~~~i~i~GvI~N~v 154 (451)
T PRK01077 79 AQGADIAVIEGVMGLFDGAGSDPDEGSTAD---IAKLLG-APVVLVVDASGMAQSAAALVLGFATFDPDVRIAGVILNRV 154 (451)
T ss_pred cccCCEEEEECCCccccCCccCCCCCCHHH---HHHHhC-CCEEEEECCchHHHHHHHHHHHHHHhCCCCCEEEEEEECC
Confidence 247999999987422 11 0011112 222222 3578888876422 12122 223333456789999999
Q ss_pred CCCCChhhHHHHHHHhCCCeEEE
Q 019214 251 DGHAKGGGALSAVAATKSPVIFI 273 (344)
Q Consensus 251 D~~~~~~~~~~~~~~~~~pv~~~ 273 (344)
............+...++|+..+
T Consensus 155 ~~~~~~~~l~~~l~~~gipvLG~ 177 (451)
T PRK01077 155 GSERHYQLLREALERCGIPVLGA 177 (451)
T ss_pred CChhHHHHHHHHHHhcCCCEEEE
Confidence 65333223345555578887644
No 340
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.50 E-value=2.4e-06 Score=80.88 Aligned_cols=165 Identities=18% Similarity=0.169 Sum_probs=82.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcC-cchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHH-
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF-RAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE- 177 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~-~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~- 177 (344)
+...|+++||.++||||+++++. +.-|.---.|.+ |..+.+.+-+-+....+ +..+|..+..+++.
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm------~q~VlP~i~~~~~k~Ra~DELpqs~~GktI------tTTePkfvP~kAvEI 83 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFM------ELLVLPNISNEYDKERAQDELPQSAAGKTI------MTTEPKFVPNEAVEI 83 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHH------hhhccccccchhHHhHHHhccCcCCCCCCc------ccCCCccccCcceEE
Confidence 44789999999999999999999 442211011111 22222222111100000 11111111001110
Q ss_pred -HHHhCCCCEEEEcCCCCCcchH-H----------------------HHHHHHHhhhhc-CCcEEEEEE-cCCcc-----
Q 019214 178 -TFKKENCDLIIVDTSGRHKQEA-A----------------------LFEEMRQVSEAT-NPDLVIFVM-DSSIG----- 226 (344)
Q Consensus 178 -~~~~~~~d~vlIDT~G~~~~~~-~----------------------~~~~l~~~~~~~-~~d~illvv-da~~~----- 226 (344)
-...-...+.+|||+|+..... . ..+++....... .+|..++|. |++-+
T Consensus 84 ~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re 163 (492)
T TIGR02836 84 NINEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPRE 163 (492)
T ss_pred eccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccc
Confidence 0001147889999999732110 0 001111111122 578888888 77521
Q ss_pred ---hhHHHHHHHHhccCCcCEEEeecCCCC-CChhhHH-HHHHHhCCCeEEEecC
Q 019214 227 ---QAAFDQAQAFKQSVSVGAVIVTKMDGH-AKGGGAL-SAVAATKSPVIFIGTG 276 (344)
Q Consensus 227 ---~~~~~~~~~~~~~~~~~~lVinK~D~~-~~~~~~~-~~~~~~~~pv~~~~~g 276 (344)
.........+++...|..+|+||.|.. ....... +.....+.|+..++.-
T Consensus 164 ~y~~aEe~~i~eLk~~~kPfiivlN~~dp~~~et~~l~~~l~eky~vpvl~v~c~ 218 (492)
T TIGR02836 164 DYVEAEERVIEELKELNKPFIILLNSTHPYHPETEALRQELEEKYDVPVLAMDVE 218 (492)
T ss_pred cchHHHHHHHHHHHhcCCCEEEEEECcCCCCchhHHHHHHHHHHhCCceEEEEHH
Confidence 222335566666667789999999953 3333333 3334568888887743
No 341
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=98.48 E-value=2.3e-07 Score=84.72 Aligned_cols=89 Identities=16% Similarity=0.221 Sum_probs=56.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCc----ch--hHHHHHhhcccC-Cc---ceeccCCCCCHHHH
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR----AG--AFDQLKQNATKA-KI---PFYGSYTESDPVRI 171 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~----~~--~~~~l~~~~~~~-~v---~~~~~~~~~~~~~~ 171 (344)
++++|+|++||||||++.+|+..|.++| +|++|..|+.. ++ .......++... .+ .+.......+
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKhd~h~~~~~~g~Ds~~~~~aGa~~v~~~s~~~~~~~~~~~~---- 76 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKHMDTERLNPDGTDTGRHFDAGADVVYGLTDGEWVASGRDRS---- 76 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEEcCCCcCCCCCCCcHHHHHCCCcEEEEecCCeEEEEecCCC----
Confidence 5799999999999999999999999999 89999999843 33 222222222110 00 0000011111
Q ss_pred HHHHHHHHHhCCCCEEEEcCCCCCc
Q 019214 172 AVEGVETFKKENCDLIIVDTSGRHK 196 (344)
Q Consensus 172 ~~~~l~~~~~~~~d~vlIDT~G~~~ 196 (344)
+.+.+..+. .++|++|||+.+...
T Consensus 77 l~~~l~~l~-~~~D~vlVEG~k~~~ 100 (274)
T PRK14493 77 LDDALDDLA-PGMDYAVVEGFKDSR 100 (274)
T ss_pred HHHHHHhhC-cCCCEEEEECCCCCC
Confidence 223344443 479999999988754
No 342
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.47 E-value=1.7e-06 Score=89.60 Aligned_cols=65 Identities=17% Similarity=0.177 Sum_probs=41.3
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch--hHHHHHHHH-hccCCcCEEEeecCCCC
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAF-KQSVSVGAVIVTKMDGH 253 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~--~~~~~~~~~-~~~~~~~~lVinK~D~~ 253 (344)
.++.+.++||||....... + ......+|.+++|+|+..+. ......... ....+ ..+++||+|..
T Consensus 84 ~~~~i~liDTPG~~~f~~~----~--~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~ 151 (720)
T TIGR00490 84 NEYLINLIDTPGHVDFGGD----V--TRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVK-PVLFINKVDRL 151 (720)
T ss_pred CceEEEEEeCCCccccHHH----H--HHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCC-EEEEEEChhcc
Confidence 3788999999998653322 1 12234589999999998762 222333322 22333 46899999985
No 343
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=98.47 E-value=7.3e-07 Score=76.38 Aligned_cols=37 Identities=27% Similarity=0.376 Sum_probs=34.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCc
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~ 139 (344)
-+.+.||.|+||||.++.+-.+....|+++-+|..||
T Consensus 5 a~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDP 41 (273)
T KOG1534|consen 5 AQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDP 41 (273)
T ss_pred eEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCH
Confidence 4667799999999999999999999999999999998
No 344
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.45 E-value=2.9e-06 Score=80.62 Aligned_cols=171 Identities=18% Similarity=0.227 Sum_probs=101.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHH--cCCccE---EeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHH
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQK--KGWKPA---LVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGV 176 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~--~g~~v~---iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l 176 (344)
+.|+|+..---|||||+-+|...-.. .+..|. +-+.|. ....|+.+...++.
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDl------------EkERGITILaKnTa----------- 62 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDL------------EKERGITILAKNTA----------- 62 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccch------------hhhcCcEEEeccce-----------
Confidence 56899999999999999999854321 122221 111111 12234544443331
Q ss_pred HHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch---hHHHHHHHHhccCCcCEEEeecCCCC
Q 019214 177 ETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ---AAFDQAQAFKQSVSVGAVIVTKMDGH 253 (344)
Q Consensus 177 ~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~---~~~~~~~~~~~~~~~~~lVinK~D~~ 253 (344)
...+++.+-||||||....-.+. ..+.. -.|.+++++||..|. .-.-..+++...++| ++|+||+|..
T Consensus 63 --v~~~~~~INIvDTPGHADFGGEV----ERvl~--MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~P-IVVvNKiDrp 133 (603)
T COG1217 63 --VNYNGTRINIVDTPGHADFGGEV----ERVLS--MVDGVLLLVDASEGPMPQTRFVLKKALALGLKP-IVVINKIDRP 133 (603)
T ss_pred --eecCCeEEEEecCCCcCCccchh----hhhhh--hcceEEEEEEcccCCCCchhhhHHHHHHcCCCc-EEEEeCCCCC
Confidence 11247888999999987554322 12222 258999999998873 323344566666666 8999999985
Q ss_pred C-ChhhHH----HHH-------HHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCC
Q 019214 254 A-KGGGAL----SAV-------AATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (344)
Q Consensus 254 ~-~~~~~~----~~~-------~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~ 313 (344)
. +...+. +.+ .+++.|+.|.+--.+...+.+..+ ... +..|++.|-+.++.
T Consensus 134 ~Arp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~--------~~~-m~pLfe~I~~hvp~ 196 (603)
T COG1217 134 DARPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDE--------ADD-MAPLFETILDHVPA 196 (603)
T ss_pred CCCHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCcccc--------ccc-hhHHHHHHHHhCCC
Confidence 3 333333 332 345788988874333333322221 133 88888888888764
No 345
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.45 E-value=6.1e-07 Score=84.60 Aligned_cols=102 Identities=17% Similarity=0.063 Sum_probs=55.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcc-eeccCCCCCHHHHHHHHHHHHH
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIP-FYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~-~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
..++++|.|||||||++|+|+ |.++ .++. .+++++.... ....... -.+.+.+....-+
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt------~~~~-~v~n-----------ypftTi~p~~G~~~v~d~--r~~~l~~~~~p~~ 62 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALT------KAGA-EAAN-----------YPFCTIEPNVGVVPVPDP--RLDKLAEIVKPKK 62 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHh------CCCC-eecc-----------cccccccceEEEEEeccc--cchhhHHhcCCcc
Confidence 358999999999999999999 7773 4444 3444432211 1110100 0000000000000
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHHH--HHhhhhcCCcEEEEEEcCC
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEEM--RQVSEATNPDLVIFVMDSS 224 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~l--~~~~~~~~~d~illvvda~ 224 (344)
.-...+.++|+||+....... +.+ +.+.....+|.+++|+|+.
T Consensus 63 ~~~a~i~lvD~pGL~~~a~~g-~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 63 IVPATIEFVDIAGLVKGASKG-EGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred ccCceEEEEECCCCCCCCChH-HHHHHHHHHHHHhCCEEEEEEeCC
Confidence 012358999999986533221 112 1233345789999999985
No 346
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.44 E-value=3.2e-07 Score=78.17 Aligned_cols=31 Identities=19% Similarity=0.218 Sum_probs=27.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeec
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~ 137 (344)
+..++++|.|||||||++|.|. |.+++-++.
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~------~~~~~~~~~ 147 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLK------RSRACNVGA 147 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHh------CcccceecC
Confidence 4579999999999999999999 887776665
No 347
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.43 E-value=4.4e-06 Score=67.09 Aligned_cols=91 Identities=23% Similarity=0.174 Sum_probs=55.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
..++++||||+||||++..++..+...++.+..++++........... ....................+..++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------LIIVGGKKASGSGELRLRLALALARK 76 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------hhhhhccCCCCCHHHHHHHHHHHHHh
Confidence 578999999999999999999888776656777777654332211100 00000111122233334444455554
Q ss_pred CCCCEEEEcCCCCCcch
Q 019214 182 ENCDLIIVDTSGRHKQE 198 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~ 198 (344)
..++++++|.++.....
T Consensus 77 ~~~~viiiDei~~~~~~ 93 (148)
T smart00382 77 LKPDVLILDEITSLLDA 93 (148)
T ss_pred cCCCEEEEECCcccCCH
Confidence 45799999999876544
No 348
>PTZ00416 elongation factor 2; Provisional
Probab=98.42 E-value=6.3e-07 Score=94.10 Aligned_cols=65 Identities=15% Similarity=0.154 Sum_probs=41.6
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch--hHHHHHHHHhccCCcCEEEeecCCCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQSVSVGAVIVTKMDGH 253 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~--~~~~~~~~~~~~~~~~~lVinK~D~~ 253 (344)
++.+.||||||... +..++ ......+|.+++|+|+..|. ..............+.++++||+|..
T Consensus 91 ~~~i~liDtPG~~~----f~~~~--~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 91 PFLINLIDSPGHVD----FSSEV--TAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRA 157 (836)
T ss_pred ceEEEEEcCCCHHh----HHHHH--HHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhh
Confidence 45688999999864 22232 22234589999999998872 22233333332223458889999997
No 349
>PRK13351 elongation factor G; Reviewed
Probab=98.42 E-value=1.8e-06 Score=89.23 Aligned_cols=81 Identities=16% Similarity=0.107 Sum_probs=46.7
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchh--HHHHHHHHhccCCcCEEEeecCCCCCC-hhhH
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAFKQSVSVGAVIVTKMDGHAK-GGGA 259 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~--~~~~~~~~~~~~~~~~lVinK~D~~~~-~~~~ 259 (344)
++.+.++||||..... .... .....+|.+++|+|++.+.. .............+..+|+||+|.... ....
T Consensus 72 ~~~i~liDtPG~~df~----~~~~--~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~ 145 (687)
T PRK13351 72 NHRINLIDTPGHIDFT----GEVE--RSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGADLFKV 145 (687)
T ss_pred CEEEEEEECCCcHHHH----HHHH--HHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCCCHHHH
Confidence 6778999999985322 1221 12235799999999987632 222233333333345789999998643 3333
Q ss_pred HHHH-HHhCCC
Q 019214 260 LSAV-AATKSP 269 (344)
Q Consensus 260 ~~~~-~~~~~p 269 (344)
++.+ ..++.+
T Consensus 146 ~~~i~~~l~~~ 156 (687)
T PRK13351 146 LEDIEERFGKR 156 (687)
T ss_pred HHHHHHHHCCC
Confidence 3333 334544
No 350
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.42 E-value=1.2e-06 Score=85.64 Aligned_cols=112 Identities=13% Similarity=0.133 Sum_probs=65.5
Q ss_pred CCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc-hh--HHHHHHHHh-ccCCcCEEEeecCCCCCChh--
Q 019214 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG-QA--AFDQAQAFK-QSVSVGAVIVTKMDGHAKGG-- 257 (344)
Q Consensus 184 ~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~-~~--~~~~~~~~~-~~~~~~~lVinK~D~~~~~~-- 257 (344)
..+.||||||.. .+...+ +..+..+|.+++|+|+..+ .. ..+.+.... ...+..++|+||+|......
T Consensus 117 ~~i~~IDtPGH~----~fi~~m--~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~~~~~ 190 (460)
T PTZ00327 117 RHVSFVDCPGHD----ILMATM--LNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVKEAQAQ 190 (460)
T ss_pred ceEeeeeCCCHH----HHHHHH--HHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccCHHHHH
Confidence 457899999963 343343 2223467999999999864 11 122222111 12233467899999864321
Q ss_pred hHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCC
Q 019214 258 GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (344)
Q Consensus 258 ~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~ 313 (344)
...+.+...- ... .....+.+.+|+++|.| ++.|++.|.+.++.
T Consensus 191 ~~~~ei~~~l---------~~~--~~~~~~iipVSA~~G~n-I~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 191 DQYEEIRNFV---------KGT--IADNAPIIPISAQLKYN-IDVVLEYICTQIPI 234 (460)
T ss_pred HHHHHHHHHH---------Hhh--ccCCCeEEEeeCCCCCC-HHHHHHHHHhhCCC
Confidence 1122221100 000 11234677899999999 99999999987654
No 351
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.41 E-value=4.2e-07 Score=86.39 Aligned_cols=109 Identities=19% Similarity=0.221 Sum_probs=70.5
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHHH---HHHHhccCCcCEEEeecCCCCCC-hhh
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ---AQAFKQSVSVGAVIVTKMDGHAK-GGG 258 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~~---~~~~~~~~~~~~lVinK~D~~~~-~~~ 258 (344)
.|-+-+|||||+.....+. -+++. .+.-.++|+||++|.++... ..++...+.+ +-|+||+|+... ...
T Consensus 75 ~Y~lnlIDTPGHVDFsYEV---SRSLA---ACEGalLvVDAsQGveAQTlAN~YlAle~~LeI-iPViNKIDLP~Adper 147 (603)
T COG0481 75 TYVLNLIDTPGHVDFSYEV---SRSLA---ACEGALLVVDASQGVEAQTLANVYLALENNLEI-IPVLNKIDLPAADPER 147 (603)
T ss_pred EEEEEEcCCCCccceEEEe---hhhHh---hCCCcEEEEECccchHHHHHHHHHHHHHcCcEE-EEeeecccCCCCCHHH
Confidence 5778899999986543222 12222 24568999999999555443 3444444444 668999999543 223
Q ss_pred HHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCC
Q 019214 259 ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (344)
Q Consensus 259 ~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~ 313 (344)
+....+. +-. .+.+....+|+++|.| +++++++|-+.+|.
T Consensus 148 vk~eIe~-------------~iG-id~~dav~~SAKtG~g-I~~iLe~Iv~~iP~ 187 (603)
T COG0481 148 VKQEIED-------------IIG-IDASDAVLVSAKTGIG-IEDVLEAIVEKIPP 187 (603)
T ss_pred HHHHHHH-------------HhC-CCcchheeEecccCCC-HHHHHHHHHhhCCC
Confidence 3322221 111 1334567889999999 99999999998863
No 352
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.40 E-value=4.3e-06 Score=68.98 Aligned_cols=37 Identities=32% Similarity=0.428 Sum_probs=32.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccE-Eeec
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPA-LVCA 137 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~-iv~~ 137 (344)
...|.++|+|||||||++.+++..|...|++|+ +++.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~ 42 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITP 42 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEee
Confidence 357999999999999999999999999999886 4443
No 353
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=98.38 E-value=1.8e-05 Score=75.09 Aligned_cols=157 Identities=19% Similarity=0.255 Sum_probs=88.6
Q ss_pred EEEEcCC-CCCHHHHHHHHHHHHHHcCCccEEe--ecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH-
Q 019214 104 IMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALV--CADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF- 179 (344)
Q Consensus 104 i~ivG~~-GvGKTTl~~~La~~l~~~g~~v~iv--~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~- 179 (344)
++|.|+. |+||||++..|..+|.++|.+|.-. ..|.-.++-.... .|.+.+ .-|+.-+-.+.++++
T Consensus 3 vvIAg~~SG~GKTTvT~glm~aL~~rg~~VqpfKvGPDYIDP~~H~~a------tG~~sr----NLD~~mm~~~~v~~~f 72 (451)
T COG1797 3 VVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPFKVGPDYIDPGYHTAA------TGRPSR----NLDSWMMGEEGVRALF 72 (451)
T ss_pred eEEecCCCCCcHHHHHHHHHHHHHhcCCcccccccCCCccCchhhhHh------hCCccC----CCchhhcCHHHHHHHH
Confidence 6677777 9999999999999999998887653 3343333222111 121110 112221112222222
Q ss_pred --HhCCCCEEEEcC-CCCCcc-----hHHHHHHHHHhhhhcCCcEEEEEEcCCcc-hhHHHHHH---HHhccCCcCEEEe
Q 019214 180 --KKENCDLIIVDT-SGRHKQ-----EAALFEEMRQVSEATNPDLVIFVMDSSIG-QAAFDQAQ---AFKQSVSVGAVIV 247 (344)
Q Consensus 180 --~~~~~d~vlIDT-~G~~~~-----~~~~~~~l~~~~~~~~~d~illvvda~~~-~~~~~~~~---~~~~~~~~~~lVi 247 (344)
...+.|+.+|+. -|.... +......+.++.. -.|++|+|++.- .+...++. .|....++.++|+
T Consensus 73 ~~~~~~adi~vIEGVMGLfDG~~~~~~~gSTA~lAk~l~----~PVvLVid~~~~s~S~AAiv~G~~~fdp~v~iaGVIl 148 (451)
T COG1797 73 ARAAADADIAVIEGVMGLFDGRGSATDTGSTADLAKLLG----APVVLVVDASGLSRSVAAIVKGFKHFDPDVNIAGVIL 148 (451)
T ss_pred HHhcCCCCEEEEeeccccccCCCCCcCCCCHHHHHHHhC----CCEEEEEeCcchhHHHHHHHHHHHhcCCCCceEEEEE
Confidence 134778888854 333221 1111122323222 358999999764 33334444 4555567889999
Q ss_pred ecCCCCCChhhHHHHHHH-hCCCeEEEe
Q 019214 248 TKMDGHAKGGGALSAVAA-TKSPVIFIG 274 (344)
Q Consensus 248 nK~D~~~~~~~~~~~~~~-~~~pv~~~~ 274 (344)
|++-...+.....+.+.. .++||+-+-
T Consensus 149 NrVgserH~~llr~Ale~~~gv~vlG~l 176 (451)
T COG1797 149 NRVGSERHYELLRDALEEYTGVPVLGYL 176 (451)
T ss_pred ecCCCHHHHHHHHHHhhhcCCCcEEEEe
Confidence 999766665555666666 678877553
No 354
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.36 E-value=4.4e-05 Score=74.90 Aligned_cols=184 Identities=16% Similarity=0.061 Sum_probs=93.7
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCC-CCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCC-
Q 019214 79 IFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAK- 156 (344)
Q Consensus 79 l~~~l~~~l~~~~~~~~~~~~~~~ii~ivG~~-GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~- 156 (344)
+++.+...+.-.........++++.+.|+|+. ||||||++..|+.+|.++ |...-+.|.. .+ +.+...+..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~i~Iagt~Tg~GKT~vt~~L~~al~~~---v~~fK~GpD~---id-~~p~~~~~~~ 288 (476)
T PRK06278 216 LKEKLKSRSGISTNNKKEERNKPKGIILLATGSESGKTFLTTSIAGKLRGK---VFVAKIGPDV---RD-IVPSLYLLRE 288 (476)
T ss_pred HHHHHHHHhcccccccchhhcCCCeEEEEeCCCCCCHHHHHHHHHHHHHhC---eEEEcCCCCh---hh-cCCcceeccc
Confidence 44444444443322222233445678888887 999999999999999874 4444332210 11 001000000
Q ss_pred --cceeccCCCCCHHHHHHHHHHHHHhCCCCEEEEcCCCC-Ccch-HH----HHHHHHHhhhhcCCcEEEEEEcCCcch-
Q 019214 157 --IPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGR-HKQE-AA----LFEEMRQVSEATNPDLVIFVMDSSIGQ- 227 (344)
Q Consensus 157 --v~~~~~~~~~~~~~~~~~~l~~~~~~~~d~vlIDT~G~-~~~~-~~----~~~~l~~~~~~~~~d~illvvda~~~~- 227 (344)
.|........+......+.++.++..++|++||+.+|- .... .. ....+ ..... -.+++|+|+..+.
T Consensus 289 ~~sp~~a~n~~~d~~~~~~~~~~~~~~~~~DivIIEGagGL~dg~~~~~~~~S~adl---Ak~l~-~PVILV~~~~~g~i 364 (476)
T PRK06278 289 KMTKYNSIKIGDRGWSDVEEFLEFVKNSDYDYYIIEGVMGAFTGALNKKNPYSGAEI---AKALG-FPVYIVSSCSKSGI 364 (476)
T ss_pred ccCChHHHhhcCCcccCHHHHHHHHHhcCCCEEEEECCCCcccccCCCCccccHHHH---HHHhC-CCEEEEEcCCCChH
Confidence 00000010011111112333344334789999999863 2220 00 11122 22222 3688999987653
Q ss_pred -hHHHH---HHHH--hccCCcCEEEeecCCCCCChhhHHHHHHHhCCCeEEE
Q 019214 228 -AAFDQ---AQAF--KQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFI 273 (344)
Q Consensus 228 -~~~~~---~~~~--~~~~~~~~lVinK~D~~~~~~~~~~~~~~~~~pv~~~ 273 (344)
..... ...+ ....++.++|+|++............+...++||+-+
T Consensus 365 ~~~~~~i~G~~~~l~~~~i~i~GVIlN~v~~~~~~~~~~~~le~~gvpVLG~ 416 (476)
T PRK06278 365 EGAFVESMAYYSLLKKMGVKVEGIILNKVYNMEIFEKVKKIAENSNINLIGV 416 (476)
T ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEEECCCcHHHHHHHHHHHHhcCCCEEEe
Confidence 22222 2233 2245678999999985444344455666689999876
No 355
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.34 E-value=2.5e-06 Score=88.58 Aligned_cols=64 Identities=17% Similarity=0.247 Sum_probs=39.7
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch--hHHHHHHH-HhccCCcCEEEeecCCCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQA-FKQSVSVGAVIVTKMDGH 253 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~--~~~~~~~~-~~~~~~~~~lVinK~D~~ 253 (344)
++.+.||||||..... .++.. ....+|.+++|+|+..+. ........ .....+ .++++||+|..
T Consensus 86 ~~~i~liDtPG~~df~----~~~~~--~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~-~iv~iNK~D~~ 152 (731)
T PRK07560 86 EYLINLIDTPGHVDFG----GDVTR--AMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVK-PVLFINKVDRL 152 (731)
T ss_pred cEEEEEEcCCCccChH----HHHHH--HHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCC-eEEEEECchhh
Confidence 5677899999987532 22211 123479999999998762 22222222 222333 47889999975
No 356
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=98.34 E-value=3.4e-07 Score=78.35 Aligned_cols=118 Identities=14% Similarity=0.111 Sum_probs=59.8
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH----HHHHHhc--cCCcCEEEeecCCCCCCh
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQ--SVSVGAVIVTKMDGHAKG 256 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~----~~~~~~~--~~~~~~lVinK~D~~~~~ 256 (344)
.+.+.|.||+|..... .++.. ....+|.+++|.|.+....... ....+.. ...+..+|.||+|+....
T Consensus 48 ~v~l~i~Dt~G~~~~~-----~~~~~-~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~ 121 (176)
T cd04133 48 TVNLGLWDTAGQEDYN-----RLRPL-SYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDK 121 (176)
T ss_pred EEEEEEEECCCCcccc-----ccchh-hcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccCh
Confidence 4667899999974322 11111 2346899999999875432221 2222221 123457889999985431
Q ss_pred hhHHHHHHHhC-CCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 257 GGALSAVAATK-SPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 257 ~~~~~~~~~~~-~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
.... ...+ .++. ...++....-....+.+.+|++.|.| ++++++.+.+.+
T Consensus 122 ~~~~---~~~~~~~v~-~~~~~~~a~~~~~~~~~E~SAk~~~n-V~~~F~~~~~~~ 172 (176)
T cd04133 122 QYLA---DHPGASPIT-TAQGEELRKQIGAAAYIECSSKTQQN-VKAVFDAAIKVV 172 (176)
T ss_pred hhhh---hccCCCCCC-HHHHHHHHHHcCCCEEEECCCCcccC-HHHHHHHHHHHH
Confidence 1000 0000 0000 00000000000011234578999999 999999887754
No 357
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=98.34 E-value=3e-05 Score=69.20 Aligned_cols=42 Identities=31% Similarity=0.449 Sum_probs=36.8
Q ss_pred eEEEEE-cCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcch
Q 019214 102 SVIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG 143 (344)
Q Consensus 102 ~ii~iv-G~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~ 143 (344)
++++++ |+.||||||++.+||.+++..|++|.++|.||..+.
T Consensus 3 ~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n~~ 45 (241)
T PRK13886 3 KIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVNAT 45 (241)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCCch
Confidence 455555 888999999999999999999999999999998753
No 358
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.34 E-value=1.7e-06 Score=75.65 Aligned_cols=104 Identities=10% Similarity=0.002 Sum_probs=59.6
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH---HHHHHhc--cCCcCEEEeecCCCCCCh-
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ--SVSVGAVIVTKMDGHAKG- 256 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~---~~~~~~~--~~~~~~lVinK~D~~~~~- 256 (344)
...+.|.||+|..... .+.. .....+|.+++|.|.+....... ....+.. ...+..+|.||+|+..+.
T Consensus 43 ~~~l~iwDt~G~e~~~-----~l~~-~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v 116 (200)
T smart00176 43 PIRFNVWDTAGQEKFG-----GLRD-GYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKV 116 (200)
T ss_pred EEEEEEEECCCchhhh-----hhhH-HHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccC
Confidence 4567899999974321 1211 12346899999999987533221 2222222 123457889999975321
Q ss_pred -hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 257 -GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 257 -~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
..........+ .+.+.+|++.|+| +.++++++.+.+
T Consensus 117 ~~~~~~~~~~~~------------------~~~~e~SAk~~~~-v~~~F~~l~~~i 153 (200)
T smart00176 117 KAKSITFHRKKN------------------LQYYDISAKSNYN-FEKPFLWLARKL 153 (200)
T ss_pred CHHHHHHHHHcC------------------CEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 11111111111 1234578889999 999999987655
No 359
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.34 E-value=8.7e-07 Score=70.20 Aligned_cols=20 Identities=30% Similarity=0.478 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 019214 103 VIMFVGLQGSGKTTTCTKYA 122 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La 122 (344)
.|+++|++||||||+++.|+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~ 20 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLC 20 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHh
Confidence 37899999999999999999
No 360
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=98.33 E-value=6.7e-05 Score=66.49 Aligned_cols=168 Identities=13% Similarity=0.141 Sum_probs=83.0
Q ss_pred EEEEcCC-CCCHHHHHHHHHHHHHHcCCccEEee---cCcC---cchhHHHHHhhcccCCc-----ceeccC--------
Q 019214 104 IMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVC---ADTF---RAGAFDQLKQNATKAKI-----PFYGSY-------- 163 (344)
Q Consensus 104 i~ivG~~-GvGKTTl~~~La~~l~~~g~~v~iv~---~D~~---~~~~~~~l~~~~~~~~v-----~~~~~~-------- 163 (344)
+.|+|.. |+|||+++..|+..|.++|++|...- ..+. .......+........- ++....
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~KPv~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~a~ 81 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYKPVQSGCEETDRNGDALALQRLSGLPLDYEDVNPYRFEEPLSPHLAA 81 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEeeEecCCCCCCCcHHHHHHHHHcCCCCChhhcCceeeCCCCCHHHHH
Confidence 4556555 99999999999999999999886643 1111 11123333332221110 110000
Q ss_pred --CC-CCHHHHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch--hHHHHHHHHhc
Q 019214 164 --TE-SDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQ 238 (344)
Q Consensus 164 --~~-~~~~~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~--~~~~~~~~~~~ 238 (344)
.+ ......+.+.++.+. .++|+++||+||..............+.... ...+++|.++..+. ........+..
T Consensus 82 ~~~~~~~~~~~i~~~~~~l~-~~~D~viIEg~gg~~~~~~~~~~~adl~~~l-~~pvilV~~~~~~~i~~~~~~i~~l~~ 159 (222)
T PRK00090 82 ALEGVAIDLEKISAALRRLA-QQYDLVLVEGAGGLLVPLTEDLTLADLAKQL-QLPVILVVGVKLGCINHTLLTLEAIRA 159 (222)
T ss_pred HHhCCCCCHHHHHHHHHHHH-hhCCEEEEECCCceeccCCCCCcHHHHHHHh-CCCEEEEECCCCcHHHHHHHHHHHHHH
Confidence 00 001122334444433 5899999999875321100000011112111 34577888876552 12222222322
Q ss_pred -cCCcCEEEeecCCCC-CCh-hhHHHHH-HHhCCCeEEE
Q 019214 239 -SVSVGAVIVTKMDGH-AKG-GGALSAV-AATKSPVIFI 273 (344)
Q Consensus 239 -~~~~~~lVinK~D~~-~~~-~~~~~~~-~~~~~pv~~~ 273 (344)
...+.++|+|+++.. ... ....+.+ ...+.|+.-+
T Consensus 160 ~~~~i~gvIlN~~~~~~~~~~~~~~~~l~~~~gi~vlg~ 198 (222)
T PRK00090 160 RGLPLAGWVANGIPPEPGLRHAENLATLERLLPAPLLGE 198 (222)
T ss_pred CCCCeEEEEEccCCCcchhHHHHHHHHHHHHcCCCeEEe
Confidence 345678999999865 222 2223333 3356776544
No 361
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.32 E-value=4.1e-06 Score=73.84 Aligned_cols=65 Identities=14% Similarity=0.112 Sum_probs=36.3
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH---HHHH---HhccCCcCEEEeecCCCCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQA---FKQSVSVGAVIVTKMDGHA 254 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~---~~~~---~~~~~~~~~lVinK~D~~~ 254 (344)
.+.+.+.||+|..... .++. .....++.+++|.|.+....... .... ..+.. +..+|.||+|...
T Consensus 57 ~i~i~~~Dt~g~~~~~-----~~~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~i~lv~nK~Dl~~ 127 (215)
T PTZ00132 57 PICFNVWDTAGQEKFG-----GLRD-GYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENI-PIVLVGNKVDVKD 127 (215)
T ss_pred EEEEEEEECCCchhhh-----hhhH-HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC-CEEEEEECccCcc
Confidence 4566789999964321 1111 11235788999999876432211 1111 11222 3467899999753
No 362
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.31 E-value=1.1e-06 Score=84.85 Aligned_cols=110 Identities=15% Similarity=0.255 Sum_probs=71.5
Q ss_pred hhHHHHHH--HHHHHHHCCCCHHHHHHHHHHHHHhhcccccccCCChHHHHHHHHHHHHHhhcCCC-CCCC-----CCCC
Q 019214 27 VLNECLNE--ITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPG-KPSF-----TPKK 98 (344)
Q Consensus 27 ~~~~~~~~--i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~-----~~~~ 98 (344)
.++.+++. |.+.|+..|++++.+..+++.+...+..+.. .......+...+.+.+.+.+... .... ....
T Consensus 175 ~~~~PFSkGiLaRsLi~aDV~~~~A~~Ia~~Lk~~L~~kg~--~~~~ra~VR~~V~~~L~~~l~~~~a~~y~la~~i~~~ 252 (475)
T PRK12337 175 APRVPFSKGILAQSLMAAGLAPDVARRLARETERDLRRSGD--RVVRRDQLRRKVEALLLEEAGEEVARRYRLLRSIRRP 252 (475)
T ss_pred CCCCCCchhHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccc--ccccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhcc
Confidence 33344566 9999999999999999999999887632111 11123445555655555544321 0000 1112
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcc
Q 019214 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (344)
Q Consensus 99 ~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~ 142 (344)
.+|.+|++.|+||+||||++.+||..+ |. ..+++.|..|.
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~l---g~-~~ii~tD~iR~ 292 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRL---GI-TRIVSTDAVRE 292 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc---CC-cEEeehhHHHH
Confidence 357899999999999999999999654 32 23778887554
No 363
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.31 E-value=1.2e-06 Score=77.20 Aligned_cols=115 Identities=19% Similarity=0.259 Sum_probs=67.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
..|+++|++||||||+++++.......++...++..++... .....
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~-----------------~~~~~----------------- 51 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKT-----------------IEPYR----------------- 51 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEE-----------------EEeCC-----------------
Confidence 57999999999999999999966555555555444422110 00000
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH----HHHHHhcc---CCcCEEEeecCCCCC
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQS---VSVGAVIVTKMDGHA 254 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~----~~~~~~~~---~~~~~lVinK~D~~~ 254 (344)
...++.++||+|..... .+.. .....++.++++.|.+......+ ....+... .-+..+|.||+|+..
T Consensus 52 ~~~~~~~~Dt~gq~~~~-----~~~~-~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~ 125 (219)
T COG1100 52 RNIKLQLWDTAGQEEYR-----SLRP-EYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFD 125 (219)
T ss_pred CEEEEEeecCCCHHHHH-----HHHH-HHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEeccccccc
Confidence 03457899999984321 1111 12346788899998875321111 22222221 234578899999976
Q ss_pred Ch
Q 019214 255 KG 256 (344)
Q Consensus 255 ~~ 256 (344)
..
T Consensus 126 ~~ 127 (219)
T COG1100 126 EQ 127 (219)
T ss_pred ch
Confidence 54
No 364
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.31 E-value=4e-06 Score=88.25 Aligned_cols=65 Identities=17% Similarity=0.147 Sum_probs=40.8
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchh--HHHHHHHHhccCCcCEEEeecCCCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAFKQSVSVGAVIVTKMDGH 253 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~--~~~~~~~~~~~~~~~~lVinK~D~~ 253 (344)
++-+-||||||+.. +..++ ......+|.+++|+|+..|.. .....+.......+.++++||+|..
T Consensus 97 ~~~inliDtPGh~d----F~~e~--~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHVD----FSSEV--TAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHHH----HHHHH--HHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCccc
Confidence 45567999999853 33333 222345899999999988722 2223333333333458889999987
No 365
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.30 E-value=1.3e-06 Score=71.76 Aligned_cols=29 Identities=31% Similarity=0.368 Sum_probs=23.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeec
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~ 137 (344)
.++++|.+||||||++|.|. |.+..-++.
T Consensus 85 ~~~~~G~~~vGKstlin~l~------~~~~~~~~~ 113 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALV------GKKKVSVSA 113 (141)
T ss_pred EEEEECCCCCCHHHHHHHHh------CCCceeeCC
Confidence 79999999999999999998 766544443
No 366
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.30 E-value=2.6e-05 Score=65.64 Aligned_cols=123 Identities=20% Similarity=0.173 Sum_probs=68.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
..|+++|+-|+||||++.+++ -+....++.|....... .++.++. ..+ ++... ..
T Consensus 11 ~KIvv~G~~~agKtTfv~~~s------~k~~v~t~~~~~~~s~k--~kr~tTv-a~D-~g~~~---------------~~ 65 (187)
T COG2229 11 TKIVVIGPVGAGKTTFVRALS------DKPLVITEADASSVSGK--GKRPTTV-AMD-FGSIE---------------LD 65 (187)
T ss_pred eeEEEEcccccchhhHHHHhh------ccccceeeccccccccc--cccceeE-eec-ccceE---------------Ec
Confidence 568999999999999999999 44444443321100000 0000110 000 01000 01
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH--HHHHHHHhccC-CcCEEEeecCCCCCC
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFKQSV-SVGAVIVTKMDGHAK 255 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~--~~~~~~~~~~~-~~~~lVinK~D~~~~ 255 (344)
+++-+-++||||..... .|..+. ...+.-.++++|++.+.+. ...+..+.... .+..+.+||.|+...
T Consensus 66 ~~~~v~LfgtPGq~RF~-----fm~~~l-~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a 136 (187)
T COG2229 66 EDTGVHLFGTPGQERFK-----FMWEIL-SRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDA 136 (187)
T ss_pred CcceEEEecCCCcHHHH-----HHHHHH-hCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCC
Confidence 24677899999985322 232222 2357788999999877443 33444443333 344666999999654
No 367
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.29 E-value=1.2e-06 Score=73.31 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=20.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYA 122 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La 122 (344)
+...++++|.|||||||++|.|.
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~ 121 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALL 121 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHH
Confidence 34679999999999999999999
No 368
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.28 E-value=8.7e-07 Score=74.36 Aligned_cols=100 Identities=13% Similarity=0.030 Sum_probs=53.8
Q ss_pred CCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHH---HHHHHHhc----cCCcCEEEeecCCCCCCh
Q 019214 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQ----SVSVGAVIVTKMDGHAKG 256 (344)
Q Consensus 184 ~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~---~~~~~~~~----~~~~~~lVinK~D~~~~~ 256 (344)
+.+.+-||+|.... .+ ...+|.+++|.|.+...... .....+.. ...+..+|.||.|+....
T Consensus 47 ~~l~i~D~~g~~~~--~~---------~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~ 115 (158)
T cd04103 47 HLLLIRDEGGAPDA--QF---------ASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESN 115 (158)
T ss_pred EEEEEEECCCCCch--hH---------HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcC
Confidence 44668899998531 11 23578999999987643221 22222211 112457889999974210
Q ss_pred -hhHH-HHHHHhCCCeEEEecCCCCC-cCcCCChHHHHHHHhCCCChhHHHHHHHh
Q 019214 257 -GGAL-SAVAATKSPVIFIGTGEHMD-EFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (344)
Q Consensus 257 -~~~~-~~~~~~~~pv~~~~~g~~~~-~l~~~~~~~~is~~~g~g~i~~l~~~i~~ 309 (344)
..+. +... .+. ... ..+.+.+|+++|+| ++++++.+.+
T Consensus 116 ~~~v~~~~~~-------------~~~~~~~-~~~~~e~SAk~~~~-i~~~f~~~~~ 156 (158)
T cd04103 116 PRVIDDARAR-------------QLCADMK-RCSYYETCATYGLN-VERVFQEAAQ 156 (158)
T ss_pred CcccCHHHHH-------------HHHHHhC-CCcEEEEecCCCCC-HHHHHHHHHh
Confidence 0010 0000 000 000 11334578999999 9999888764
No 369
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.28 E-value=3.1e-06 Score=77.71 Aligned_cols=102 Identities=17% Similarity=0.287 Sum_probs=70.2
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHhhcccccccCCChHHHHHHHHHHHHHhhcCCCCCC------CCCCCCCCeEEEEE
Q 019214 34 EITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPS------FTPKKGKPSVIMFV 107 (344)
Q Consensus 34 ~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~------~~~~~~~~~ii~iv 107 (344)
-+.+.|..+|+.++.|-.+...+.+.+..+.. ..-..+.+.+.+.+.+.+........ .......|.+|++.
T Consensus 21 iL~rsL~~~g~~~~~A~~iA~~i~~~L~~~g~--~~i~~~el~~~V~~~L~~~~~~~~~~~y~~~~~i~~~~~p~iIlI~ 98 (301)
T PRK04220 21 ILARSLTAAGMKPSIAYEIASEIEEELKKEGI--KEITKEELRRRVYYKLIEKDYEEVAEKYLLWRRIRKSKEPIIILIG 98 (301)
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHHHcCC--EEeeHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHhcCCCCEEEEEE
Confidence 37889999999999999999988887765522 12233444555665555544321111 01112356889999
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCc
Q 019214 108 GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (344)
Q Consensus 108 G~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~ 141 (344)
|++||||||++.+||..+ |.. .+++.|..|
T Consensus 99 G~sgsGKStlA~~La~~l---~~~-~vi~~D~~r 128 (301)
T PRK04220 99 GASGVGTSTIAFELASRL---GIR-SVIGTDSIR 128 (301)
T ss_pred CCCCCCHHHHHHHHHHHh---CCC-EEEechHHH
Confidence 999999999999999877 444 478899876
No 370
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.26 E-value=8.5e-06 Score=81.19 Aligned_cols=178 Identities=16% Similarity=0.174 Sum_probs=99.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHH
Q 019214 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (344)
Q Consensus 99 ~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 178 (344)
-+..+++|.|.--+|||-++.++- |.+|.--.. ...+...|..++ |...+.+-...
T Consensus 473 lRSPIcCilGHVDTGKTKlld~ir------~tNVqegea-----------ggitqqIgAt~f-------p~~ni~e~tk~ 528 (1064)
T KOG1144|consen 473 LRSPICCILGHVDTGKTKLLDKIR------GTNVQEGEA-----------GGITQQIGATYF-------PAENIREKTKE 528 (1064)
T ss_pred cCCceEEEeecccccchHHHHHhh------ccccccccc-----------cceeeecccccc-------chHHHHHHHHH
Confidence 356799999999999999999997 555532111 001111222211 22222221111
Q ss_pred HH------hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch--hHHHHHHHHhccCCcCEEEeecC
Q 019214 179 FK------KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQSVSVGAVIVTKM 250 (344)
Q Consensus 179 ~~------~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~--~~~~~~~~~~~~~~~~~lVinK~ 250 (344)
+. ..-+-+.+|||||.... ..++..- ...+|..++|+|...|. ...+....++....+.++.+||+
T Consensus 529 ~~~~~K~~~kvPg~lvIdtpghEsF-----tnlRsrg-sslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKi 602 (1064)
T KOG1144|consen 529 LKKDAKKRLKVPGLLVIDTPGHESF-----TNLRSRG-SSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKI 602 (1064)
T ss_pred HHhhhhhhcCCCeeEEecCCCchhh-----hhhhhcc-ccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhh
Confidence 11 12345789999997432 2333222 22489999999998873 33444555555555667889999
Q ss_pred CCCC-----Chh----------------------hHHHHHHHhCCCeE-EEecCCCCCcCcCCChHHHHHHHhCCCChhH
Q 019214 251 DGHA-----KGG----------------------GALSAVAATKSPVI-FIGTGEHMDEFEVFDVKPFVSRLLGMGDWSG 302 (344)
Q Consensus 251 D~~~-----~~~----------------------~~~~~~~~~~~pv~-~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~ 302 (344)
|... ... .+...+.+.|+... |.-+ .+...+-..+++|+.+|+| +.+
T Consensus 603 DRLYgwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykN----k~~~~~vsiVPTSA~sGeG-ipd 677 (1064)
T KOG1144|consen 603 DRLYGWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKN----KEMGETVSIVPTSAISGEG-IPD 677 (1064)
T ss_pred hhhcccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeec----ccccceEEeeecccccCCC-cHH
Confidence 9631 111 11122233333322 1111 1223344567889999999 999
Q ss_pred HHHHHHhhC
Q 019214 303 FMDKIHEVV 311 (344)
Q Consensus 303 l~~~i~~~~ 311 (344)
|+-+|-+.-
T Consensus 678 Ll~llv~lt 686 (1064)
T KOG1144|consen 678 LLLLLVQLT 686 (1064)
T ss_pred HHHHHHHHH
Confidence 998877653
No 371
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=98.26 E-value=4e-06 Score=70.20 Aligned_cols=45 Identities=38% Similarity=0.506 Sum_probs=40.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcch
Q 019214 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG 143 (344)
Q Consensus 99 ~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~ 143 (344)
.++.+|-|+|.+|+||||++++|...|..+|+.+-+.|.|.-|.+
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~g 65 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHG 65 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhc
Confidence 356899999999999999999999999999999999999976543
No 372
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.26 E-value=5e-06 Score=73.96 Aligned_cols=95 Identities=19% Similarity=0.182 Sum_probs=54.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCC--ccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGW--KPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE 177 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~--~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 177 (344)
+-.+|+++|++++||||++|.|. |. ...+.+. ...+|+ |+-........
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~------~~~~~f~~~~~-----------~~~~T~-gi~~~~~~~~~----------- 56 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLF------GTLSGFDVMDT-----------SQQTTK-GIWMWSVPFKL----------- 56 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHh------CCCCCeEecCC-----------CCCCcc-ceEEEeccccC-----------
Confidence 44789999999999999999999 76 3333332 122222 22111110000
Q ss_pred HHHhCCCCEEEEcCCCCCcchHHH-HHHHH-HhhhhcCCcEEEEEEcCCcc
Q 019214 178 TFKKENCDLIIVDTSGRHKQEAAL-FEEMR-QVSEATNPDLVIFVMDSSIG 226 (344)
Q Consensus 178 ~~~~~~~d~vlIDT~G~~~~~~~~-~~~l~-~~~~~~~~d~illvvda~~~ 226 (344)
..+..++++||+|........ ...++ ......-++.+++.++....
T Consensus 57 ---~~~~~v~~lDteG~~~~~~~~~~~~~~~~~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 57 ---GKEHAVLLLDTEGTDGRERGEFEDDARLFALATLLSSVLIYNSWETIL 104 (224)
T ss_pred ---CCcceEEEEecCCcCccccCchhhhhHHHHHHHHHhCEEEEeccCccc
Confidence 125678999999987654322 11111 11122247888888887654
No 373
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.26 E-value=5.8e-06 Score=71.93 Aligned_cols=64 Identities=16% Similarity=0.154 Sum_probs=38.7
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH----HHHHHhc--cCCcCEEEeecCCCCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQ--SVSVGAVIVTKMDGHA 254 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~----~~~~~~~--~~~~~~lVinK~D~~~ 254 (344)
.+.+.|.||||.... ++. .....+|.+++|.|.+....... ....+.. ...+..+|.||+|+..
T Consensus 65 ~v~l~iwDTaG~~~~-------~~~-~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~ 134 (195)
T cd01873 65 SVSLRLWDTFGDHDK-------DRR-FAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRY 134 (195)
T ss_pred EEEEEEEeCCCChhh-------hhc-ccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccc
Confidence 466789999998531 111 12457899999999876532211 2222222 1234578899999853
No 374
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.23 E-value=5.4e-06 Score=78.03 Aligned_cols=65 Identities=22% Similarity=0.361 Sum_probs=40.1
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch-------h--HHH--HHHHHhccCCcCEEEeecCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ-------A--AFD--QAQAFKQSVSVGAVIVTKMD 251 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~-------~--~~~--~~~~~~~~~~~~~lVinK~D 251 (344)
.+.+-||||||.. +++.+| +.-+..+|..+||+|++.+. . ..+ .+.... ...-.++.+||+|
T Consensus 84 k~~~tIiDaPGHr----dFvknm--ItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl-Gi~~lIVavNKMD 156 (428)
T COG5256 84 KYNFTIIDAPGHR----DFVKNM--ITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL-GIKQLIVAVNKMD 156 (428)
T ss_pred CceEEEeeCCchH----HHHHHh--hcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc-CCceEEEEEEccc
Confidence 5678899999954 344444 33445689999999998751 1 111 111111 1223467799999
Q ss_pred CCC
Q 019214 252 GHA 254 (344)
Q Consensus 252 ~~~ 254 (344)
...
T Consensus 157 ~v~ 159 (428)
T COG5256 157 LVS 159 (428)
T ss_pred ccc
Confidence 975
No 375
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.22 E-value=1.8e-06 Score=79.70 Aligned_cols=32 Identities=28% Similarity=0.357 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeec
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~ 137 (344)
....++++|.|||||||++|+|. |.+++-++.
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~------~~~~~~~~~ 151 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLA------GKKIAKTGN 151 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHh------cCCccccCC
Confidence 34679999999999999999999 877766655
No 376
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.22 E-value=2.1e-06 Score=74.24 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAY 123 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~ 123 (344)
..++++|.|||||||++|.|..
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~ 149 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLK 149 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999993
No 377
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.22 E-value=2.1e-05 Score=74.41 Aligned_cols=130 Identities=16% Similarity=0.276 Sum_probs=73.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH---HHcCCccEEeec---CcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYH---QKKGWKPALVCA---DTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAV 173 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l---~~~g~~v~iv~~---D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~ 173 (344)
+.+..+|+..|-+||||++-+|..+= ...|. |.. ..+..+.|-.++ ...|+.+..+..
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~----Vk~rk~~~~a~SDWM~iE---kqRGISVtsSVM--------- 74 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGT----VKGRKSGKHAKSDWMEIE---KQRGISVTSSVM--------- 74 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcce----eeeccCCcccccHHHHHH---HhcCceEEeeEE---------
Confidence 34789999999999999999998541 11121 111 001111232222 223444332111
Q ss_pred HHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH--HHHHHHHhccCCcCEEEeecCC
Q 019214 174 EGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFKQSVSVGAVIVTKMD 251 (344)
Q Consensus 174 ~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~--~~~~~~~~~~~~~~~lVinK~D 251 (344)
.+.-.++-+-+.||||.....++..+.+ . ..|..++|+|+..|.+. ....+-.+-..-|..-.+||+|
T Consensus 75 ----qF~Y~~~~iNLLDTPGHeDFSEDTYRtL---t---AvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlD 144 (528)
T COG4108 75 ----QFDYADCLVNLLDTPGHEDFSEDTYRTL---T---AVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLD 144 (528)
T ss_pred ----EeccCCeEEeccCCCCccccchhHHHHH---H---hhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccc
Confidence 1112366678999999977655543332 2 35889999999887433 3333333323334466799999
Q ss_pred CCCC
Q 019214 252 GHAK 255 (344)
Q Consensus 252 ~~~~ 255 (344)
...+
T Consensus 145 R~~r 148 (528)
T COG4108 145 REGR 148 (528)
T ss_pred cccC
Confidence 8554
No 378
>PRK04296 thymidine kinase; Provisional
Probab=98.21 E-value=1.9e-05 Score=68.40 Aligned_cols=87 Identities=21% Similarity=0.244 Sum_probs=53.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeec--CcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA--DTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~--D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
.++.++|++|+||||++..++..+...|++|.++.. |+ +.+. .....+.++++... ..... ......+..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~-~~~~----~~i~~~lg~~~~~~-~~~~~-~~~~~~~~~- 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDD-RYGE----GKVVSRIGLSREAI-PVSSD-TDIFELIEE- 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccc-cccC----CcEecCCCCcccce-EeCCh-HHHHHHHHh-
Confidence 578899999999999999999999888999999844 43 1111 11223334332210 00111 111222222
Q ss_pred HhCCCCEEEEcCCCCCc
Q 019214 180 KKENCDLIIVDTSGRHK 196 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~ 196 (344)
...++|+|+||.++..+
T Consensus 75 ~~~~~dvviIDEaq~l~ 91 (190)
T PRK04296 75 EGEKIDCVLIDEAQFLD 91 (190)
T ss_pred hCCCCCEEEEEccccCC
Confidence 34578999999998764
No 379
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=98.21 E-value=2.1e-06 Score=75.42 Aligned_cols=38 Identities=26% Similarity=0.223 Sum_probs=34.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCc
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~ 139 (344)
+-|.+-|+.||||||....||..++..+.+|.+|+.||
T Consensus 20 KwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDP 57 (323)
T KOG2825|consen 20 KWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDP 57 (323)
T ss_pred eEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCc
Confidence 45666688899999999999999999999999999999
No 380
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.20 E-value=5e-05 Score=73.02 Aligned_cols=141 Identities=16% Similarity=0.183 Sum_probs=78.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
..++++++|-|||||||+.+++. ..+|- .-| ..+++..-. . .++
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vt------radve---vqp---------YaFTTksL~---v---------------GH~ 210 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVT------RADDE---VQP---------YAFTTKLLL---V---------------GHL 210 (620)
T ss_pred CcCeEEEecCCCCCcHhhccccc------ccccc---cCC---------cccccchhh---h---------------hhh
Confidence 34789999999999999988887 32222 111 122222110 1 011
Q ss_pred HhCCCCEEEEcCCCCCcchHH--HHHHHHHhhhhc-CCcEEEEEEcCCc--chhHHHHHHHHhcc-----CCcCEEEeec
Q 019214 180 KKENCDLIIVDTSGRHKQEAA--LFEEMRQVSEAT-NPDLVIFVMDSSI--GQAAFDQAQAFKQS-----VSVGAVIVTK 249 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~~~--~~~~l~~~~~~~-~~d~illvvda~~--~~~~~~~~~~~~~~-----~~~~~lVinK 249 (344)
...--.+.+|||||+.....+ ..-+|..+.+.. -...|++++|-|. |....+++..|... ..+.++|+||
T Consensus 211 dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK 290 (620)
T KOG1490|consen 211 DYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNK 290 (620)
T ss_pred hhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeec
Confidence 001224579999998755422 223444444332 1346889999875 44555555544432 2456899999
Q ss_pred CCCCCCh------hhHHHHHHH-hCCCeEEEecC
Q 019214 250 MDGHAKG------GGALSAVAA-TKSPVIFIGTG 276 (344)
Q Consensus 250 ~D~~~~~------~~~~~~~~~-~~~pv~~~~~g 276 (344)
+|..... ..++..+.. -+.||..++.-
T Consensus 291 ~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~ 324 (620)
T KOG1490|consen 291 IDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCV 324 (620)
T ss_pred ccccCccccCHHHHHHHHHHHhccCceEEEeccc
Confidence 9985432 233444444 34777777643
No 381
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.18 E-value=2.7e-06 Score=79.67 Aligned_cols=31 Identities=26% Similarity=0.244 Sum_probs=28.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeec
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~ 137 (344)
...+.++|-|||||||++|.|+ |++++.++.
T Consensus 132 ~~~v~vvG~PNVGKSslIN~L~------~k~~~~~s~ 162 (322)
T COG1161 132 KIRVGVVGYPNVGKSTLINRLL------GKKVAKTSN 162 (322)
T ss_pred ceEEEEEcCCCCcHHHHHHHHh------cccceeeCC
Confidence 3569999999999999999999 999988887
No 382
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.18 E-value=3.2e-06 Score=77.63 Aligned_cols=31 Identities=39% Similarity=0.466 Sum_probs=25.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeec
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~ 137 (344)
...++++|.|||||||++|.|. |.+++-++.
T Consensus 118 ~~~~~~vG~~nvGKSslin~l~------~~~~~~~~~ 148 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLA------GKKVAKVGN 148 (276)
T ss_pred CeEEEEECCCCCCHHHHHHHHh------CCCccccCC
Confidence 4679999999999999999999 776655554
No 383
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.18 E-value=1.6e-05 Score=65.99 Aligned_cols=40 Identities=33% Similarity=0.316 Sum_probs=35.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcc
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~ 142 (344)
+++++|+||+||||++..++..+...|.++..++.+....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchH
Confidence 3688999999999999999999988899999999875443
No 384
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.18 E-value=1.5e-06 Score=72.73 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 019214 102 SVIMFVGLQGSGKTTTCTKYA 122 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La 122 (344)
++++|+|++||||||++|.|.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~ 56 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALL 56 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999999
No 385
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.17 E-value=2e-05 Score=74.57 Aligned_cols=118 Identities=19% Similarity=0.155 Sum_probs=60.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
--|+|+|.+|+||||++|+|- |. -+.|+.-.. .. ...++....+ |...
T Consensus 36 l~IaV~G~sGsGKSSfINalr------Gl----~~~d~~aA~-tG--v~etT~~~~~-Y~~p------------------ 83 (376)
T PF05049_consen 36 LNIAVTGESGSGKSSFINALR------GL----GHEDEGAAP-TG--VVETTMEPTP-YPHP------------------ 83 (376)
T ss_dssp EEEEEEESTTSSHHHHHHHHT------T------TTSTTS---SS--SHSCCTS-EE-EE-S------------------
T ss_pred eEEEEECCCCCCHHHHHHHHh------CC----CCCCcCcCC-CC--CCcCCCCCee-CCCC------------------
Confidence 569999999999999999997 42 111111000 00 0011111111 1111
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHHHHHHHhccCCcCEEEeecCCC
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDG 252 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~~~~~~~~~~~~~~lVinK~D~ 252 (344)
.-.++++-|.||.....-..-..+..+ ....-|.++++.+..-.......+.......++..+|-||+|.
T Consensus 84 ~~pnv~lWDlPG~gt~~f~~~~Yl~~~-~~~~yD~fiii~s~rf~~ndv~La~~i~~~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 84 KFPNVTLWDLPGIGTPNFPPEEYLKEV-KFYRYDFFIIISSERFTENDVQLAKEIQRMGKKFYFVRTKVDS 153 (376)
T ss_dssp S-TTEEEEEE--GGGSS--HHHHHHHT-TGGG-SEEEEEESSS--HHHHHHHHHHHHTT-EEEEEE--HHH
T ss_pred CCCCCeEEeCCCCCCCCCCHHHHHHHc-cccccCEEEEEeCCCCchhhHHHHHHHHHcCCcEEEEEecccc
Confidence 135789999999854432222222221 2334577777666555566667777776666677899999996
No 386
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=98.16 E-value=1.2e-05 Score=67.09 Aligned_cols=66 Identities=24% Similarity=0.228 Sum_probs=38.8
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHH---HhccCCcCEEEeecCCCCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQA---FKQSVSVGAVIVTKMDGHA 254 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~---~~~~~~~~~lVinK~D~~~ 254 (344)
.+.+-+.|++|..... . +.. .....+|.++++.|.+..... ...... ......+..+|.||.|...
T Consensus 47 ~~~l~i~D~~g~~~~~-~----~~~-~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~ 118 (162)
T PF00071_consen 47 PVNLEIWDTSGQERFD-S----LRD-IFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSD 118 (162)
T ss_dssp EEEEEEEEETTSGGGH-H----HHH-HHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGG
T ss_pred cccccccccccccccc-c----ccc-ccccccccccccccccccccccccccccccccccccccccceeeeccccccc
Confidence 4667899999975332 1 111 113457899999998764322 222222 2222245577889999865
No 387
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.16 E-value=6.6e-06 Score=74.46 Aligned_cols=81 Identities=22% Similarity=0.267 Sum_probs=49.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
+...|.++||+||||||+++++..++.+....-.+.=.||- +|.....-.++....-.........+++..
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPI---------E~vh~skkslI~QREvG~dT~sF~~aLraA 194 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPI---------EYVHESKKSLINQREVGRDTLSFANALRAA 194 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCch---------HhhhcchHhhhhHHHhcccHHHHHHHHHHH
Confidence 34679999999999999999999999876544444445661 111111111111011111122344567777
Q ss_pred HhCCCCEEEE
Q 019214 180 KKENCDLIIV 189 (344)
Q Consensus 180 ~~~~~d~vlI 189 (344)
..+++|+|+|
T Consensus 195 LReDPDVIlv 204 (353)
T COG2805 195 LREDPDVILV 204 (353)
T ss_pred hhcCCCEEEE
Confidence 7789999998
No 388
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=98.13 E-value=6.5e-05 Score=65.41 Aligned_cols=165 Identities=18% Similarity=0.212 Sum_probs=85.9
Q ss_pred EEEEEcCC-CCCHHHHHHHHHHHHHHcCCccEEee---cCcCcchhHHHHHhhcccCC----cceeccCCCCCHHHHH--
Q 019214 103 VIMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVC---ADTFRAGAFDQLKQNATKAK----IPFYGSYTESDPVRIA-- 172 (344)
Q Consensus 103 ii~ivG~~-GvGKTTl~~~La~~l~~~g~~v~iv~---~D~~~~~~~~~l~~~~~~~~----v~~~~~~~~~~~~~~~-- 172 (344)
.+.|+|.. |||||+++..|+.+|.++|.+|+..- .........+.+........ +..+.-.....+....
T Consensus 2 ~i~I~~t~t~vGKT~vslgL~~~l~~~g~~v~~~KPi~~~~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (199)
T PF13500_consen 2 TIFITGTDTGVGKTVVSLGLARALRRRGIKVGYFKPIQTGPEDDEDAELIRELFGLSEPPDDPSPYTFDEPASPHLAAEL 81 (199)
T ss_dssp EEEEEESSSSSSHHHHHHHHHHHHHHTTSEEEEEEEEEESCCCSSHHHHHHHHCCTCCCHHHHECEEESSSS-HHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHhCCCceEEEeeeEecCCCCchHHHHHHHhCCCcccccccccccCcccCHHHHhhc
Confidence 46777774 99999999999999999999997532 22222233444444333221 0001111111221111
Q ss_pred ------HHHH--HHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc--hhHHHHHHHHhc-cCC
Q 019214 173 ------VEGV--ETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QAAFDQAQAFKQ-SVS 241 (344)
Q Consensus 173 ------~~~l--~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~--~~~~~~~~~~~~-~~~ 241 (344)
.+.+ +++ ..++|+++|+.+|..........-...+.....+ .+++|.++..+ .......+.+.. ..+
T Consensus 82 ~~~~~~~~~i~~~~l-~~~~D~vlVEGag~~~~~~~~~~~n~dia~~L~a-~vIlV~~~~~g~i~~~l~~~~~~~~~g~~ 159 (199)
T PF13500_consen 82 EGVDIDLERIIYKEL-AEEYDVVLVEGAGGLMVPIFSGDLNADIAKALGA-PVILVASGRLGTINHTLLTIEALKQRGIR 159 (199)
T ss_dssp HT----HHHHHHHHC-HTTTCEEEEEESSSTTSECCTTEEHHHHHHHHT--EEEEEEESSTTHHHHHHHHHHHHHCTTS-
T ss_pred cCCcccHHHHHHHHH-hhcCCEEEEeCCcccCcccccChHHHHHHHHcCC-CEEEEeCCCCCCHHHHHHHHHHHHhcCCC
Confidence 1111 222 3489999999988532110000001122223333 57888888765 222333344433 356
Q ss_pred cCEEEeecCCCCCChhhHHHHHHHhCCCeEE
Q 019214 242 VGAVIVTKMDGHAKGGGALSAVAATKSPVIF 272 (344)
Q Consensus 242 ~~~lVinK~D~~~~~~~~~~~~~~~~~pv~~ 272 (344)
+.++|+|+++.. ..........++|+..
T Consensus 160 v~GvI~N~~~~~---~~~~~l~~~~~i~vlg 187 (199)
T PF13500_consen 160 VLGVILNRVPEP---ENLEALREKSGIPVLG 187 (199)
T ss_dssp EEEEEEEECTCC---HHHHHHHHHHCCEECE
T ss_pred EEEEEEECCCCH---HHHHHHHHhCCCCEEE
Confidence 789999997654 2333444556777664
No 389
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.12 E-value=3.4e-05 Score=69.56 Aligned_cols=126 Identities=21% Similarity=0.211 Sum_probs=72.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
-.|..+|.-.-|||||.++++..|++.|...+. +.|..+. .+.....|+.+..... ++..
T Consensus 13 VNigtiGHvdHGKTTLtaAit~~la~~~~~~~~-~y~~id~------aPeEk~rGITIntahv-------------eyet 72 (394)
T COG0050 13 VNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAK-AYDQIDN------APEEKARGITINTAHV-------------EYET 72 (394)
T ss_pred eEEEEeccccCchhhHHHHHHHHHHhhcccccc-chhhhcc------CchHhhcCceecccee-------------EEec
Confidence 457788999999999999999999987643321 1111110 1122223333221111 0112
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch--hHHH---HHHHHhccCCcCEEEeecCCCCCC
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFD---QAQAFKQSVSVGAVIVTKMDGHAK 255 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~--~~~~---~~~~~~~~~~~~~lVinK~D~~~~ 255 (344)
.+-.|-.+||||.. +++..| +..+..-|..++|+.|+.|. ...+ .++.+ ..+-..+++||+|....
T Consensus 73 ~~rhyahVDcPGHa----DYvKNM--ItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqv--Gvp~ivvflnK~Dmvdd 143 (394)
T COG0050 73 ANRHYAHVDCPGHA----DYVKNM--ITGAAQMDGAILVVAATDGPMPQTREHILLARQV--GVPYIVVFLNKVDMVDD 143 (394)
T ss_pred CCceEEeccCCChH----HHHHHH--hhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhc--CCcEEEEEEecccccCc
Confidence 25567899999985 455555 33334568899999988762 2222 22221 12223556999999863
No 390
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.12 E-value=2.2e-05 Score=80.16 Aligned_cols=142 Identities=15% Similarity=0.067 Sum_probs=78.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCC--ccE----EeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGW--KPA----LVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAV 173 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~--~v~----iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~ 173 (344)
+.+.|.++|+-.+|||||+-+|..+-....+ +|. ..|. .+.....|+.+.....
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~-----------~e~EqeRGITI~saa~--------- 68 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDW-----------MEQEQERGITITSAAT--------- 68 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCC-----------cHHHHhcCCEEeeeee---------
Confidence 4578999999999999999999865432211 111 1111 1111222333322111
Q ss_pred HHHHHHHhC-CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchh--HHHHHHHHhccCCcCEEEeecC
Q 019214 174 EGVETFKKE-NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAFKQSVSVGAVIVTKM 250 (344)
Q Consensus 174 ~~l~~~~~~-~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~--~~~~~~~~~~~~~~~~lVinK~ 250 (344)
.+... ++.+.||||||+.....+..+.+ ...|..++|+|+..|.. .....+...+..-+..+++||+
T Consensus 69 ----s~~~~~~~~iNlIDTPGHVDFt~EV~rsl------rvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKm 138 (697)
T COG0480 69 ----TLFWKGDYRINLIDTPGHVDFTIEVERSL------RVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKM 138 (697)
T ss_pred ----EEEEcCceEEEEeCCCCccccHHHHHHHH------HhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECc
Confidence 01123 38889999999976544332222 23688999999988732 2222233223333458889999
Q ss_pred CCCCC-hhhHH-HHHHHhCCCeE
Q 019214 251 DGHAK-GGGAL-SAVAATKSPVI 271 (344)
Q Consensus 251 D~~~~-~~~~~-~~~~~~~~pv~ 271 (344)
|.... ..... .+...++.++.
T Consensus 139 DR~~a~~~~~~~~l~~~l~~~~~ 161 (697)
T COG0480 139 DRLGADFYLVVEQLKERLGANPV 161 (697)
T ss_pred cccccChhhhHHHHHHHhCCCce
Confidence 98643 23333 33333554433
No 391
>PRK12289 GTPase RsgA; Reviewed
Probab=98.12 E-value=3e-06 Score=80.09 Aligned_cols=21 Identities=19% Similarity=0.434 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 019214 102 SVIMFVGLQGSGKTTTCTKYA 122 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La 122 (344)
++++|+|+||||||||+|.|.
T Consensus 173 ki~v~iG~SgVGKSSLIN~L~ 193 (352)
T PRK12289 173 KITVVAGPSGVGKSSLINRLI 193 (352)
T ss_pred ceEEEEeCCCCCHHHHHHHHc
Confidence 468999999999999999999
No 392
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.11 E-value=2e-05 Score=69.17 Aligned_cols=39 Identities=26% Similarity=0.386 Sum_probs=35.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCc
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~ 139 (344)
..++.++|+||+|||+++..++......|.+++.++.+-
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 478999999999999999999999988899999999974
No 393
>PRK06526 transposase; Provisional
Probab=98.07 E-value=5.5e-06 Score=74.97 Aligned_cols=36 Identities=22% Similarity=0.359 Sum_probs=32.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeec
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~ 137 (344)
..++++||||+|||+++.+++..+...|++|..++.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~ 134 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATA 134 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhH
Confidence 468999999999999999999999999999877655
No 394
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.06 E-value=8.3e-05 Score=65.03 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 019214 103 VIMFVGLQGSGKTTTCTKYA 122 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La 122 (344)
.|+++|.+||||||+++.+.
T Consensus 2 KIvlvGd~gVGKTSLi~~~~ 21 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLIC 21 (202)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48899999999999999998
No 395
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=98.06 E-value=0.00028 Score=57.43 Aligned_cols=121 Identities=19% Similarity=0.194 Sum_probs=69.6
Q ss_pred EEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHhCCC
Q 019214 105 MFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENC 184 (344)
Q Consensus 105 ~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 184 (344)
.++| +|+|||+++..|+..+.++|.+|....+.. .+
T Consensus 4 ~~~~-~~~Gkt~~~~~l~~~l~~~~~~v~~~kp~~-------------------------------------------~~ 39 (134)
T cd03109 4 FGTG-TDIGKTVATAILARALKEKGYRVAPLKPVQ-------------------------------------------TY 39 (134)
T ss_pred EeCC-CCcCHHHHHHHHHHHHHHCCCeEEEEecCC-------------------------------------------CC
Confidence 4445 679999999999999999999998776511 26
Q ss_pred CEEEEcCCCCCc-ch-HHHHHHHHHhhhhcCCcEEEEEEcCCcch--hHHHHHHHHh-ccCCcCEEEeecCCCCCCh--h
Q 019214 185 DLIIVDTSGRHK-QE-AALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFK-QSVSVGAVIVTKMDGHAKG--G 257 (344)
Q Consensus 185 d~vlIDT~G~~~-~~-~~~~~~l~~~~~~~~~d~illvvda~~~~--~~~~~~~~~~-~~~~~~~lVinK~D~~~~~--~ 257 (344)
|+++|+++|-.. +. ... ....+..... ..+++|.++..+. +........+ ....+.+++.|.++..... .
T Consensus 40 d~vliEGaGg~~~p~~~~~--~~~d~~~~~~-~~vllV~~~~~g~i~~a~~~~~~l~~~g~~i~gvi~N~~~~~~~~~~~ 116 (134)
T cd03109 40 DFVLVEGAGGLCVPLKEDF--TNADVAKELN-LPAILVTSAGLGSINHAFLTIEAARIKGIILNGVLGNVIVEKEGLATL 116 (134)
T ss_pred CEEEEECCCccccCCCCCC--CHHHHHHHhC-CCEEEEEcCCCCcHhHHHHHHHHHHhcCCceeEEEEccCCCccchhhh
Confidence 889999987422 10 000 0111122222 2477888776552 1222222222 2345678999998764321 1
Q ss_pred hHHHHHHHhCCCeEE
Q 019214 258 GALSAVAATKSPVIF 272 (344)
Q Consensus 258 ~~~~~~~~~~~pv~~ 272 (344)
.........+.|+.-
T Consensus 117 ~~~~i~~~~gip~LG 131 (134)
T cd03109 117 NVETIERLTGIPVLG 131 (134)
T ss_pred hHHHHHHhcCCCEEE
Confidence 122333445666543
No 396
>PRK12288 GTPase RsgA; Reviewed
Probab=98.05 E-value=5e-06 Score=78.58 Aligned_cols=21 Identities=29% Similarity=0.542 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 019214 102 SVIMFVGLQGSGKTTTCTKYA 122 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La 122 (344)
++++|+|+||||||||+|+|.
T Consensus 206 ki~~~vG~sgVGKSTLiN~Ll 226 (347)
T PRK12288 206 RISIFVGQSGVGKSSLINALL 226 (347)
T ss_pred CCEEEECCCCCCHHHHHHHhc
Confidence 468999999999999999999
No 397
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=98.04 E-value=2.9e-05 Score=69.00 Aligned_cols=39 Identities=28% Similarity=0.390 Sum_probs=36.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCc
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~ 139 (344)
..++.+.|+||+|||+++..++......|.+|..++.+.
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~ 61 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEG 61 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 478999999999999999999999988899999999983
No 398
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.04 E-value=1.5e-05 Score=76.78 Aligned_cols=21 Identities=29% Similarity=0.273 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 019214 102 SVIMFVGLQGSGKTTTCTKYA 122 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La 122 (344)
..|+++|.|||||||++++|+
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt 22 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAAT 22 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 358999999999999999999
No 399
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=98.03 E-value=7.6e-06 Score=67.26 Aligned_cols=38 Identities=32% Similarity=0.458 Sum_probs=31.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccE-EeecCc
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPA-LVCADT 139 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~-iv~~D~ 139 (344)
++|+|+|+.|+||||++..|+..|.++|++|+ +.+.|.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEccC
Confidence 37999999999999999999999999999999 666655
No 400
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.00 E-value=6.9e-05 Score=64.25 Aligned_cols=36 Identities=25% Similarity=0.359 Sum_probs=33.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCc
Q 019214 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (344)
Q Consensus 104 i~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~ 139 (344)
+.+.|+||+|||+++..++....+.|.+|..++.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~ 37 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEE 37 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 678999999999999999999989999999999864
No 401
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.00 E-value=2.4e-05 Score=68.07 Aligned_cols=107 Identities=19% Similarity=0.217 Sum_probs=59.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCccee------cc-CCCCCHHHHHHH
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFY------GS-YTESDPVRIAVE 174 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~------~~-~~~~~~~~~~~~ 174 (344)
++.++.|++|+||||++..+...+...|++|.+++. ...+...|..........+. .. .....+
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~ap---T~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~------ 89 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAP---TNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRP------ 89 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEES---SHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSC------
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECC---cHHHHHHHHHhhCcchhhHHHHHhcCCcccccccc------
Confidence 578888999999999999999999999999998887 44444444443211100000 00 000000
Q ss_pred HHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCc
Q 019214 175 GVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSI 225 (344)
Q Consensus 175 ~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~ 225 (344)
.....+++|||-++..... .+..+...... ....+++|-|+.+
T Consensus 90 -----~~~~~~vliVDEasmv~~~--~~~~ll~~~~~-~~~klilvGD~~Q 132 (196)
T PF13604_consen 90 -----ELPKKDVLIVDEASMVDSR--QLARLLRLAKK-SGAKLILVGDPNQ 132 (196)
T ss_dssp -----C-TSTSEEEESSGGG-BHH--HHHHHHHHS-T--T-EEEEEE-TTS
T ss_pred -----cCCcccEEEEecccccCHH--HHHHHHHHHHh-cCCEEEEECCcch
Confidence 0125789999999987543 22222221111 1236889999864
No 402
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=4.4e-05 Score=64.79 Aligned_cols=155 Identities=17% Similarity=0.196 Sum_probs=88.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
..++|+|-.+|||||++.....---...|... .|+++..... .+..
T Consensus 23 ~KlVflGdqsVGKTslItRf~yd~fd~~YqAT---------------------IGiDFlskt~-------------~l~d 68 (221)
T KOG0094|consen 23 YKLVFLGDQSVGKTSLITRFMYDKFDNTYQAT---------------------IGIDFLSKTM-------------YLED 68 (221)
T ss_pred EEEEEEccCccchHHHHHHHHHhhhcccccce---------------------eeeEEEEEEE-------------EEcC
Confidence 67999999999999999999854333333222 2222211000 0001
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHHHHhhh--hcCCcEEEEEEcCCcchhHHH---HHH---HHhccC-CcCEEEeecCCC
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSE--ATNPDLVIFVMDSSIGQAAFD---QAQ---AFKQSV-SVGAVIVTKMDG 252 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l~~~~~--~~~~d~illvvda~~~~~~~~---~~~---~~~~~~-~~~~lVinK~D~ 252 (344)
..+.+-+-||||... .+.+.. ...+..+++|-|.+....... ... ..+... .+..+|-||.|+
T Consensus 69 ~~vrLQlWDTAGQER--------FrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL 140 (221)
T KOG0094|consen 69 RTVRLQLWDTAGQER--------FRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDL 140 (221)
T ss_pred cEEEEEEEecccHHH--------HhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccc
Confidence 145667899999742 222222 346788999999875432222 222 222221 234577899999
Q ss_pred CCChhhHHHHHHHhCCCeEEEecCCCC-CcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCCC
Q 019214 253 HAKGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMD 314 (344)
Q Consensus 253 ~~~~~~~~~~~~~~~~pv~~~~~g~~~-~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~~ 314 (344)
...-+...+.-. .. .++.. ..+.+|++.|++ +..|+..|...++..
T Consensus 141 ~dkrqvs~eEg~-------------~kAkel~a--~f~etsak~g~N-Vk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 141 SDKRQVSIEEGE-------------RKAKELNA--EFIETSAKAGEN-VKQLFRRIAAALPGM 187 (221)
T ss_pred cchhhhhHHHHH-------------HHHHHhCc--EEEEecccCCCC-HHHHHHHHHHhccCc
Confidence 876322221111 00 11111 234578889999 999999999888754
No 403
>PLN00023 GTP-binding protein; Provisional
Probab=97.99 E-value=0.00021 Score=66.40 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 019214 102 SVIMFVGLQGSGKTTTCTKYA 122 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La 122 (344)
..|+++|..||||||++..+.
T Consensus 22 iKIVLLGdsGVGKTSLI~rf~ 42 (334)
T PLN00023 22 VRVLVVGDSGVGKSSLVHLIV 42 (334)
T ss_pred eEEEEECCCCCcHHHHHHHHh
Confidence 579999999999999999998
No 404
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=97.99 E-value=1.1e-05 Score=71.68 Aligned_cols=35 Identities=29% Similarity=0.378 Sum_probs=33.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEee
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC 136 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~ 136 (344)
+++.|+|++|+||||++.+|+..|...|++|+++.
T Consensus 2 ~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK 36 (229)
T PRK14494 2 RAIGVIGFKDSGKTTLIEKILKNLKERGYRVATAK 36 (229)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEE
Confidence 57999999999999999999999999999999994
No 405
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.99 E-value=1e-05 Score=69.04 Aligned_cols=42 Identities=29% Similarity=0.470 Sum_probs=37.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCc
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~ 141 (344)
++.+|+++|+||+||||++..|+..+...|.++.+++.|..+
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~ 44 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVR 44 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHH
Confidence 457899999999999999999999998888899999998764
No 406
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.99 E-value=4.5e-05 Score=67.39 Aligned_cols=39 Identities=26% Similarity=0.292 Sum_probs=35.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCc
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~ 139 (344)
..++.+.|+||+||||++..++..+..+|.+++.++.+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~ 57 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEG 57 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 478999999999999999999999988899999998864
No 407
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.98 E-value=3.1e-05 Score=70.39 Aligned_cols=68 Identities=22% Similarity=0.225 Sum_probs=45.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...+.|+|-|||||||++|++.....+.+ +.+-+.. +++-++.--..+..
T Consensus 143 ~~~vmVvGvPNVGKSsLINa~r~~~Lrk~-k~a~vG~-----------~pGVT~~V~~~iri------------------ 192 (335)
T KOG2485|consen 143 EYNVMVVGVPNVGKSSLINALRNVHLRKK-KAARVGA-----------EPGVTRRVSERIRI------------------ 192 (335)
T ss_pred ceeEEEEcCCCCChHHHHHHHHHHHhhhc-cceeccC-----------CCCceeeehhheEe------------------
Confidence 36799999999999999999887766655 5555555 33222221111110
Q ss_pred hCCCCEEEEcCCCCCcch
Q 019214 181 KENCDLIIVDTSGRHKQE 198 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~ 198 (344)
.+..++-++||||+..+.
T Consensus 193 ~~rp~vy~iDTPGil~P~ 210 (335)
T KOG2485|consen 193 SHRPPVYLIDTPGILVPS 210 (335)
T ss_pred ccCCceEEecCCCcCCCC
Confidence 126678899999997764
No 408
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=97.97 E-value=9e-06 Score=68.02 Aligned_cols=37 Identities=30% Similarity=0.427 Sum_probs=33.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCc
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~ 139 (344)
+++|+|++|+||||++.+|+..+..+|++|+++..|.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~~ 37 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIKHDH 37 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 4789999999999999999999998999999998753
No 409
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.97 E-value=9.1e-05 Score=68.95 Aligned_cols=147 Identities=20% Similarity=0.248 Sum_probs=76.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeec---CcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHH
Q 019214 98 KGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA---DTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVE 174 (344)
Q Consensus 98 ~~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~---D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~ 174 (344)
.|.+..|+++|+.|.||||++|.|... .+++. |+.++... .....+......-..+
T Consensus 20 ~Gi~f~im~~G~sG~GKttfiNtL~~~--------~l~~~~~~~~~~~~~~------~~~~~i~~~~~~l~e~------- 78 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFINTLFGT--------SLVDETEIDDIRAEGT------SPTLEIKITKAELEED------- 78 (373)
T ss_pred cCCceEEEEecCCCCchhHHHHhhhHh--------hccCCCCccCcccccC------CcceEEEeeeeeeecC-------
Confidence 356688999999999999999999943 22222 22222110 0001111111111100
Q ss_pred HHHHHHhCCCCEEEEcCCCCCcc------hHHHHHHHH-----------Hhhhh-----cCCcEEEEEEcCCc-chh--H
Q 019214 175 GVETFKKENCDLIIVDTSGRHKQ------EAALFEEMR-----------QVSEA-----TNPDLVIFVMDSSI-GQA--A 229 (344)
Q Consensus 175 ~l~~~~~~~~d~vlIDT~G~~~~------~~~~~~~l~-----------~~~~~-----~~~d~illvvda~~-~~~--~ 229 (344)
.-...+.+|||||.... .......+. .+.+. ...+.+++.+.|+. +.. .
T Consensus 79 ------~~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~D 152 (373)
T COG5019 79 ------GFHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLD 152 (373)
T ss_pred ------CeEEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHH
Confidence 00346789999997432 112222221 11111 12567888888874 333 3
Q ss_pred HHHHHHHhccCCcCEEEeecCCCCCCh------hhHHHHHHHhCCCeEE
Q 019214 230 FDQAQAFKQSVSVGAVIVTKMDGHAKG------GGALSAVAATKSPVIF 272 (344)
Q Consensus 230 ~~~~~~~~~~~~~~~lVinK~D~~~~~------~~~~~~~~~~~~pv~~ 272 (344)
+..+..+.+...+ +=|+.|.|.-+.. ..+...+...++||..
T Consensus 153 Ie~Mk~ls~~vNl-IPVI~KaD~lT~~El~~~K~~I~~~i~~~nI~vf~ 200 (373)
T COG5019 153 IEAMKRLSKRVNL-IPVIAKADTLTDDELAEFKERIREDLEQYNIPVFD 200 (373)
T ss_pred HHHHHHHhcccCe-eeeeeccccCCHHHHHHHHHHHHHHHHHhCCceeC
Confidence 4455566554433 4478999985542 2233445566777664
No 410
>PF13245 AAA_19: Part of AAA domain
Probab=97.97 E-value=1.9e-05 Score=57.65 Aligned_cols=45 Identities=24% Similarity=0.297 Sum_probs=34.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHc----CCccEEeecCcCcchhHHHHH
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKK----GWKPALVCADTFRAGAFDQLK 149 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~----g~~v~iv~~D~~~~~~~~~l~ 149 (344)
.+.++.|+||+|||+++.+++.++... +.+|++++. ...+.+.+.
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~---t~~aa~~l~ 59 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAP---TRAAADELR 59 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECC---CHHHHHHHH
Confidence 467779999999998888888888754 788888876 444444443
No 411
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.96 E-value=3.3e-05 Score=62.11 Aligned_cols=38 Identities=24% Similarity=0.235 Sum_probs=27.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc-----CCccEEeecC
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKK-----GWKPALVCAD 138 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~-----g~~v~iv~~D 138 (344)
.+.+.+.|++|+||||++..++..+... ..++..+++.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCP 46 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeC
Confidence 3678999999999999999999988653 4455555553
No 412
>PRK07667 uridine kinase; Provisional
Probab=97.96 E-value=1.5e-05 Score=69.16 Aligned_cols=42 Identities=21% Similarity=0.238 Sum_probs=38.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCc
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~ 141 (344)
.+.+|+|.|++|+||||++..|+..+...|.++.+++.|.|-
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~ 57 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYI 57 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCccc
Confidence 337899999999999999999999999899999999998753
No 413
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=2.7e-05 Score=65.85 Aligned_cols=107 Identities=17% Similarity=0.128 Sum_probs=64.2
Q ss_pred CCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHhccCCcC---EEEeecCCCCCCh-
Q 019214 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQSVSVG---AVIVTKMDGHAKG- 256 (344)
Q Consensus 184 ~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~~~~~~~---~lVinK~D~~~~~- 256 (344)
..+.|=||+|..... .+ .. .....++.+++|-|.+...+. ......+....++. .+|-||+|+...-
T Consensus 54 ikfeIWDTAGQERy~-sl----ap-MYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~ 127 (200)
T KOG0092|consen 54 IKFEIWDTAGQERYH-SL----AP-MYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERRE 127 (200)
T ss_pred EEEEEEEcCCccccc-cc----cc-ceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhccc
Confidence 456788999985311 11 11 123478899999999865332 23344444444432 3568999997621
Q ss_pred ---hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCCCc
Q 019214 257 ---GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQ 315 (344)
Q Consensus 257 ---~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~~~ 315 (344)
..........+ -..+-+|+++|+| ++++...|.+.++...
T Consensus 128 V~~~ea~~yAe~~g------------------ll~~ETSAKTg~N-v~~if~~Ia~~lp~~~ 170 (200)
T KOG0092|consen 128 VEFEEAQAYAESQG------------------LLFFETSAKTGEN-VNEIFQAIAEKLPCSD 170 (200)
T ss_pred ccHHHHHHHHHhcC------------------CEEEEEecccccC-HHHHHHHHHHhccCcc
Confidence 12222222111 1123468999999 9999999999887543
No 414
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.95 E-value=0.0002 Score=63.98 Aligned_cols=39 Identities=28% Similarity=0.537 Sum_probs=34.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCc
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~ 139 (344)
+.++.++|+||+||||++..++....++|.++..++.+-
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~ 63 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEN 63 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 368999999999999999999988777899999999863
No 415
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.93 E-value=2.2e-05 Score=66.69 Aligned_cols=29 Identities=34% Similarity=0.374 Sum_probs=23.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEe
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALV 135 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv 135 (344)
...++++|.+||||||++++|. +.+..-+
T Consensus 115 ~~~~~~~G~~~vGKstlin~l~------~~~~~~~ 143 (171)
T cd01856 115 GIRAMVVGIPNVGKSTLINRLR------GKKVAKV 143 (171)
T ss_pred CeEEEEECCCCCCHHHHHHHHh------CCCceee
Confidence 3578999999999999999999 6555433
No 416
>PRK06696 uridine kinase; Validated
Probab=97.93 E-value=1.5e-05 Score=70.82 Aligned_cols=44 Identities=27% Similarity=0.340 Sum_probs=38.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcch
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG 143 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~ 143 (344)
++.+|+|.|++||||||++..|+..|...|..+.+++.|-|...
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~ 64 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNP 64 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCC
Confidence 56899999999999999999999999888888888888866543
No 417
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.93 E-value=0.00011 Score=62.75 Aligned_cols=41 Identities=29% Similarity=0.237 Sum_probs=35.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcC
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~ 140 (344)
++.+|+|+|++|+||||++..|+..+...+..+.+++.|..
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~ 46 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDEL 46 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHH
Confidence 45789999999999999999999999887888888876543
No 418
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.92 E-value=1.1e-05 Score=67.10 Aligned_cols=42 Identities=36% Similarity=0.393 Sum_probs=37.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcc
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~ 142 (344)
+.+|.|+|.+|+||||++..|...|...|.++.+++.|..|.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~ 43 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRH 43 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhh
Confidence 478999999999999999999999999999999999987654
No 419
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=97.92 E-value=1.5e-05 Score=66.16 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYH 125 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l 125 (344)
+++++++|-|||||||++......+
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5899999999999999999888655
No 420
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.92 E-value=1.4e-05 Score=65.40 Aligned_cols=33 Identities=30% Similarity=0.536 Sum_probs=26.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcC
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~ 140 (344)
+|+++|+|||||||++..|+..+ | ..+++.|..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~---~--~~~i~~D~~ 33 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL---G--AVVISQDEI 33 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS---T--EEEEEHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHC---C--CEEEeHHHH
Confidence 57899999999999999998543 2 567777654
No 421
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=97.92 E-value=0.00053 Score=67.36 Aligned_cols=159 Identities=14% Similarity=0.131 Sum_probs=82.6
Q ss_pred EEEEcCC-CCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhccc--CCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 104 IMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATK--AKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 104 i~ivG~~-GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~--~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
+.|+|.. |||||+++..|+..|.++|++|...-+-+...... .+...+.+ .++..+. . ....+.+.+..+
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~g~d~~D~~-~~~~~~g~~~~~ld~~~----~-~~~~i~~~~~~~- 74 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKVGPDYIDPM-FHTQATGRPSRNLDSFF----M-SEAQIQECFHRH- 74 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEccCCCCCCHH-HHHHHhCCchhhCCccc----C-CHHHHHHHHHHh-
Confidence 5667766 99999999999999999999988765522111110 00111111 0111000 0 123333444443
Q ss_pred hCCCCEEEEcCCC-CCc---c--hHHHHHHHHHhhhhcCCcEEEEEEcCCcc-hhHHHH---HHHHhccCCcCEEEeecC
Q 019214 181 KENCDLIIVDTSG-RHK---Q--EAALFEEMRQVSEATNPDLVIFVMDSSIG-QAAFDQ---AQAFKQSVSVGAVIVTKM 250 (344)
Q Consensus 181 ~~~~d~vlIDT~G-~~~---~--~~~~~~~l~~~~~~~~~d~illvvda~~~-~~~~~~---~~~~~~~~~~~~lVinK~ 250 (344)
..++|+++|+.+| ... + ......++ .+.. .-.+++|+++..- ...... ...+....++.++|+||+
T Consensus 75 ~~~~D~viVEGagGl~~g~~p~~~~~s~adl---Ak~l-~~pVILV~~~~~~~~t~~al~~~~~~~~~~i~i~GvIlN~v 150 (449)
T TIGR00379 75 SKGTDYSIIEGVRGLYDGISAITDYGSTASV---AKAL-DAPIVLVMNCQRLSRSAAAIVLGYRSFDPGVKLKGVILNRV 150 (449)
T ss_pred cccCCEEEEecCCccccCCCCCCCCccHHHH---HHHh-CCCEEEEECCchHHHHHHHHHHHHHhhCCCCCEEEEEEECC
Confidence 2478999999875 221 1 00111122 2222 2357888887642 111121 222334556789999999
Q ss_pred CCCCChhhHHHHHHH-hCCCeEEE
Q 019214 251 DGHAKGGGALSAVAA-TKSPVIFI 273 (344)
Q Consensus 251 D~~~~~~~~~~~~~~-~~~pv~~~ 273 (344)
+.........+.+.. .++|+..+
T Consensus 151 ~~~~~~~~~~~~i~~~~gipvLG~ 174 (449)
T TIGR00379 151 GSERHLEKLKIAVEPLRGIPILGV 174 (449)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEE
Confidence 853332222333333 57886644
No 422
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.91 E-value=9e-05 Score=67.40 Aligned_cols=38 Identities=24% Similarity=0.367 Sum_probs=34.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecC
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D 138 (344)
..++.|.|+||+||||++..++...+++|.+++.++.+
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 46889999999999999999999888889999999986
No 423
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.91 E-value=1.7e-05 Score=71.50 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 019214 102 SVIMFVGLQGSGKTTTCTKYA 122 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La 122 (344)
++++|+|+|||||||++|+|.
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~ 141 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALD 141 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 579999999999999999999
No 424
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.91 E-value=6.8e-05 Score=62.27 Aligned_cols=40 Identities=30% Similarity=0.389 Sum_probs=35.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcc
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~ 142 (344)
+++++|.||+||||++..|+..+...|.++..++.|..+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~ 40 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRH 40 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 4789999999999999999999988888888888877654
No 425
>PHA00729 NTP-binding motif containing protein
Probab=97.91 E-value=5e-05 Score=67.01 Aligned_cols=25 Identities=40% Similarity=0.312 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHH
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQ 126 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~ 126 (344)
..++|+|+|||||||++.+|+..+.
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999998764
No 426
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.90 E-value=1.1e-05 Score=73.53 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAY 123 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~ 123 (344)
+++.+++|++|||||||+|+|.-
T Consensus 164 ~~~svl~GqSGVGKSSLiN~L~p 186 (301)
T COG1162 164 GKITVLLGQSGVGKSTLINALLP 186 (301)
T ss_pred CCeEEEECCCCCcHHHHHHhhCc
Confidence 46899999999999999999994
No 427
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.90 E-value=0.00015 Score=67.61 Aligned_cols=38 Identities=32% Similarity=0.302 Sum_probs=34.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecC
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D 138 (344)
..++.|.||||+||||++..++...++.|.+++.||..
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E 92 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAE 92 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEccc
Confidence 46899999999999999999999998889999999874
No 428
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.90 E-value=3.7e-05 Score=67.83 Aligned_cols=93 Identities=19% Similarity=0.279 Sum_probs=56.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHH
Q 019214 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (344)
Q Consensus 99 ~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 178 (344)
.+.-.++++|.|.|||||++.++..--.. ..+ ..+++..-+|-...+.
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~Se------aA~------------yeFTTLtcIpGvi~y~-------------- 107 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTHSE------AAS------------YEFTTLTCIPGVIHYN-------------- 107 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcchhh------hhc------------eeeeEEEeecceEEec--------------
Confidence 34467999999999999999999832211 011 2344444443222222
Q ss_pred HHhCCCCEEEEcCCCCCcchHHHHHHHH-HhhhhcCCcEEEEEEcCCcch
Q 019214 179 FKKENCDLIIVDTSGRHKQEAALFEEMR-QVSEATNPDLVIFVMDSSIGQ 227 (344)
Q Consensus 179 ~~~~~~d~vlIDT~G~~~~~~~~~~~l~-~~~~~~~~d~illvvda~~~~ 227 (344)
+..+-++|.||+......--.+-+ .+..+..+|++++|+||+...
T Consensus 108 ----ga~IQllDLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~e 153 (364)
T KOG1486|consen 108 ----GANIQLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKSE 153 (364)
T ss_pred ----CceEEEecCcccccccccCCCCCceEEEEeecccEEEEEecCCcch
Confidence 566789999998543321100111 123345789999999998763
No 429
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=97.90 E-value=2e-05 Score=72.43 Aligned_cols=21 Identities=43% Similarity=0.400 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 019214 102 SVIMFVGLQGSGKTTTCTKYA 122 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La 122 (344)
..|+++|.+|+||||+++.|.
T Consensus 5 fnImVvG~sG~GKTTFIntL~ 25 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLF 25 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 568999999999999999999
No 430
>PRK14845 translation initiation factor IF-2; Provisional
Probab=97.89 E-value=3e-05 Score=82.29 Aligned_cols=117 Identities=18% Similarity=0.193 Sum_probs=63.9
Q ss_pred CCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc--hhHHHHHHHHhccCCcCEEEeecCCCCCChh----
Q 019214 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QAAFDQAQAFKQSVSVGAVIVTKMDGHAKGG---- 257 (344)
Q Consensus 184 ~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~--~~~~~~~~~~~~~~~~~~lVinK~D~~~~~~---- 257 (344)
+.+.|+||||.... ..++. .....+|.+++|+|++.+ ....+....+.....+.++|+||+|......
T Consensus 526 p~i~fiDTPGhe~F-----~~lr~-~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~ 599 (1049)
T PRK14845 526 PGLLFIDTPGHEAF-----TSLRK-RGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISED 599 (1049)
T ss_pred CcEEEEECCCcHHH-----HHHHH-hhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccc
Confidence 45899999996322 12211 123458999999999864 2223333333333335688999999853211
Q ss_pred ------------hHHHH-----------HHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhh
Q 019214 258 ------------GALSA-----------VAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (344)
Q Consensus 258 ------------~~~~~-----------~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~ 310 (344)
..... +...|+..... ..+.++....+.+.+|+++|+| +++|.+.|...
T Consensus 600 ~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~---~~~~d~~~~v~iVpVSA~tGeG-Id~Ll~~l~~l 671 (1049)
T PRK14845 600 EPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRF---DRVQDFTRTVAIVPVSAKTGEG-IPELLMMVAGL 671 (1049)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhh---hhhhhcCCCceEEEEEcCCCCC-HHHHHHHHHHh
Confidence 11111 11111110000 0112233334567789999999 99999887543
No 431
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.89 E-value=4.6e-05 Score=68.84 Aligned_cols=38 Identities=29% Similarity=0.415 Sum_probs=34.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCc
Q 019214 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (344)
Q Consensus 104 i~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~ 141 (344)
|+++|.|||||||++..|+..+...|.++.+++.|..+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr 39 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIR 39 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHH
Confidence 78999999999999999999998889999999887643
No 432
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.88 E-value=5.3e-05 Score=66.02 Aligned_cols=34 Identities=26% Similarity=0.389 Sum_probs=26.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHc-CCccEEe
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKK-GWKPALV 135 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~-g~~v~iv 135 (344)
..++|+||+|+||||+++.|+..+... +.++..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~ 36 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTI 36 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEE
Confidence 368999999999999999999888654 3344333
No 433
>PRK15453 phosphoribulokinase; Provisional
Probab=97.88 E-value=6.8e-05 Score=68.18 Aligned_cols=43 Identities=26% Similarity=0.430 Sum_probs=38.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcc
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~ 142 (344)
++.+|+|+|.+||||||++..|+..+...+.++++++.|.|..
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 4578999999999999999999998888788899999998654
No 434
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.87 E-value=0.0001 Score=65.88 Aligned_cols=47 Identities=21% Similarity=0.363 Sum_probs=37.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHH
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQL 148 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l 148 (344)
.++.++|++|+||||++.+++..+.++|.++..++.+-......+++
T Consensus 25 ~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~ 71 (230)
T PRK08533 25 SLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQM 71 (230)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHH
Confidence 58999999999999999988888888899999998765444333333
No 435
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.86 E-value=2.4e-05 Score=68.70 Aligned_cols=40 Identities=30% Similarity=0.312 Sum_probs=34.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCc
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~ 141 (344)
++.+|+|+|++||||||++..|+..+ .+..+.+++.|.|.
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l--~~~~~~~i~~D~~~ 44 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL--GDESIAVIPQDSYY 44 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh--CCCceEEEeCCccc
Confidence 56899999999999999999999887 45678899998753
No 436
>PRK05973 replicative DNA helicase; Provisional
Probab=97.86 E-value=0.00029 Score=62.91 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=34.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCc
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~ 139 (344)
...+.|.|+||+||||++..++...+++|+++..++.+-
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEe 102 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEY 102 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeC
Confidence 357889999999999999999998888899999998853
No 437
>PRK08233 hypothetical protein; Provisional
Probab=97.85 E-value=4.3e-05 Score=65.25 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYH 125 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l 125 (344)
+.+|+|.|+|||||||++..|+..+
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4789999999999999999999766
No 438
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=97.85 E-value=0.00064 Score=67.20 Aligned_cols=34 Identities=26% Similarity=0.408 Sum_probs=28.2
Q ss_pred EEEEcCC-CCCHHHHHHHHHHHHHHcCCccEEeec
Q 019214 104 IMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVCA 137 (344)
Q Consensus 104 i~ivG~~-GvGKTTl~~~La~~l~~~g~~v~iv~~ 137 (344)
+.|+|.. +||||+++..|+..+.+.|++|+..-.
T Consensus 1 ~~I~GT~t~vGKT~v~~~L~~~l~~~G~~v~~fKp 35 (475)
T TIGR00313 1 IMVVGTTSSAGKSTLTAGLCRILARRGYRVAPFKS 35 (475)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEECC
Confidence 3566666 999999999999999999999876443
No 439
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=97.85 E-value=1.8e-05 Score=66.18 Aligned_cols=37 Identities=30% Similarity=0.373 Sum_probs=34.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeec
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~ 137 (344)
.+++.|+|+.|||||||+.+|...|..+|++|++|--
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH 38 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKH 38 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEe
Confidence 4789999999999999999999999999999999875
No 440
>PF02881 SRP54_N: SRP54-type protein, helical bundle domain; InterPro: IPR013822 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 1J8M_F 1J8Y_F 2J37_W 2OG2_A 3B9Q_A 2V3C_C 3NDB_B 1ZU5_B 1ZU4_A 1WGW_A ....
Probab=97.85 E-value=0.00026 Score=51.47 Aligned_cols=74 Identities=31% Similarity=0.535 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhhcccccChhhhHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-hhcccccccCCChHHHHHHHHHHHH
Q 019214 6 LGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKK-IVNLDDLAAGHNKRRIIQQAIFNEL 83 (344)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l 83 (344)
|+.++++..+++.+...++++.+.+.++++...|+++||+.+++..+++.++. .+. ..+.++.+.+..++++++
T Consensus 1 L~~~l~kt~~~l~~~~~~~~~~i~~~l~ele~~Li~aDVg~~~a~~i~~~ik~~~~~----~~~~~~~~~v~~~l~~~L 75 (75)
T PF02881_consen 1 LKKGLSKTFKKLSGSIFLTEKDIEEFLEELEEALIEADVGVEVAEKIIENIKKKLIK----KKGINPREEVKKALKEEL 75 (75)
T ss_dssp HHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHC----TTSSHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHhCcccccHHhHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHhc----ccCCCcHHHHHHHHHHHC
Confidence 57889999999988766789999999999999999999999999999999999 543 345566677777776653
No 441
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.84 E-value=2.4e-05 Score=66.35 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=34.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeec
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~ 137 (344)
++.+++|+|++|+||||++.+|...+...|++|+.|-.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~ 42 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 42 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEE
Confidence 45789999999999999999999999888999998865
No 442
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.84 E-value=2.8e-05 Score=65.24 Aligned_cols=38 Identities=39% Similarity=0.479 Sum_probs=34.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCc
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~ 139 (344)
++++|+|++|+||||++.+|+..+...|++|+++..|.
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK~~~ 39 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIKHDH 39 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEecC
Confidence 58999999999999999999999999999999987654
No 443
>PRK05439 pantothenate kinase; Provisional
Probab=97.84 E-value=2.9e-05 Score=72.04 Aligned_cols=43 Identities=28% Similarity=0.268 Sum_probs=37.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHH--cCCccEEeecCcCc
Q 019214 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQK--KGWKPALVCADTFR 141 (344)
Q Consensus 99 ~~~~ii~ivG~~GvGKTTl~~~La~~l~~--~g~~v~iv~~D~~~ 141 (344)
+.+.+|+|.|+|||||||++..|+..+.. .|.+|.+++.|-|-
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy 128 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL 128 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence 46789999999999999999999998875 46789999999753
No 444
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.84 E-value=1.9e-05 Score=67.71 Aligned_cols=39 Identities=31% Similarity=0.460 Sum_probs=35.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCc
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~ 141 (344)
+|+|.|++||||||++..|+..+...|.++.+++.|-|.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~ 39 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYY 39 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcc
Confidence 488999999999999999999999889999999998653
No 445
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.84 E-value=6.4e-05 Score=67.84 Aligned_cols=40 Identities=33% Similarity=0.539 Sum_probs=36.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcc
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~ 142 (344)
+|+|+|.+||||||++.++...+...|.++++++.|.|..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 4899999999999999999999988899999999998755
No 446
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.83 E-value=0.00031 Score=64.12 Aligned_cols=39 Identities=23% Similarity=0.314 Sum_probs=34.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCccEEeecCc
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKK-GWKPALVCADT 139 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~-g~~v~iv~~D~ 139 (344)
..++++.|+||+||||++..++..++.. |.+|+.++.+.
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~ 69 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE 69 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc
Confidence 3588899999999999999999998776 99999999864
No 447
>PRK06762 hypothetical protein; Provisional
Probab=97.82 E-value=0.00019 Score=60.44 Aligned_cols=38 Identities=34% Similarity=0.447 Sum_probs=31.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCc
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~ 141 (344)
+.+|+++|+|||||||++..|+..+ |..+.+++.|..+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l---~~~~~~i~~D~~r 39 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL---GRGTLLVSQDVVR 39 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---CCCeEEecHHHHH
Confidence 4689999999999999999999777 4467777876554
No 448
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.82 E-value=6.4e-05 Score=62.68 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=27.4
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHH
Q 019214 77 QAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYA 122 (344)
Q Consensus 77 ~~l~~~l~~~l~~~~~~~~~~~~~~~ii~ivG~~GvGKTTl~~~La 122 (344)
+.+.+.+.+++.. .+....++++|.+||||||+++++.
T Consensus 85 ~~L~~~l~~~~~~--------~~~~~~~~~ig~~~~Gkssl~~~l~ 122 (156)
T cd01859 85 KILRRTIKELAKI--------DGKEGKVGVVGYPNVGKSSIINALK 122 (156)
T ss_pred HHHHHHHHHHHhh--------cCCCcEEEEECCCCCCHHHHHHHHh
Confidence 4455666666542 1233557999999999999999998
No 449
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.81 E-value=7.4e-05 Score=67.13 Aligned_cols=35 Identities=17% Similarity=0.276 Sum_probs=32.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeec
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~ 137 (344)
-+.+.|+||+|||+++.+++.++...|++|.+++.
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~ 135 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITV 135 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEH
Confidence 58899999999999999999999999999998875
No 450
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.81 E-value=2.3e-05 Score=62.31 Aligned_cols=32 Identities=34% Similarity=0.472 Sum_probs=25.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCc
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~ 139 (344)
+|+|+|+|||||||++..|+..+ | ..+++.|.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~---~--~~~i~~d~ 32 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL---G--FPVISMDD 32 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---T--CEEEEEHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH---C--CeEEEecc
Confidence 58999999999999999999766 4 44556544
No 451
>PRK13796 GTPase YqeH; Provisional
Probab=97.80 E-value=2.6e-05 Score=74.48 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAY 123 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~ 123 (344)
+.+.++|.|||||||++|+|..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~ 182 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIK 182 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHh
Confidence 4689999999999999999984
No 452
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=97.80 E-value=0.00095 Score=69.00 Aligned_cols=141 Identities=14% Similarity=0.170 Sum_probs=75.3
Q ss_pred EEEEEcCC-CCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 103 VIMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 103 ii~ivG~~-GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
.+.|+|.. |+|||+++..|+..|.++|++|+..-.+...+-.......+. ...........+.+.+..+.
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi~~~p~~~~~~~~~~--------~~~~~~~~~~~I~~~~~~l~- 74 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKPIAQPPLTMSEVEALL--------ASGQLDELLEEIVARYHALA- 74 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCCcccCCCCHHHHHHHH--------hccCChHHHHHHHHHHHHhc-
Confidence 46666555 999999999999999999999998765332211111111100 00011112233334444433
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch--hHHH---H-HHHHh--ccCCcCEEEeec--CC
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFD---Q-AQAFK--QSVSVGAVIVTK--MD 251 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~--~~~~---~-~~~~~--~~~~~~~lVinK--~D 251 (344)
.++|+++||+++..............+.... ...+++|+++..+. +..+ . ...+. ....+.++|+|+ ++
T Consensus 75 ~~~D~VLIEGa~~~~~~~~~~~~na~iA~~L-~~pVILV~~~~~~si~d~~~~i~~~~~~l~~~~~~~v~GVIvNr~~v~ 153 (684)
T PRK05632 75 KDCDVVLVEGLDPTRKHPFEFSLNAEIAKNL-GAEVVLVSSGGNDTPEELAERIELAASSFGGAKNANILGVIINKLNAP 153 (684)
T ss_pred cCCCEEEEeCcCCCCcCcccCchHHHHHHHh-CCCEEEEECCCCCChHHHHHHHHHHHHHhccCCCCcEEEEEEECCCCC
Confidence 5899999999764322100000001122222 34678888876442 2222 2 22332 235677999999 65
Q ss_pred CC
Q 019214 252 GH 253 (344)
Q Consensus 252 ~~ 253 (344)
..
T Consensus 154 ~~ 155 (684)
T PRK05632 154 VD 155 (684)
T ss_pred HH
Confidence 44
No 453
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.80 E-value=6.1e-05 Score=69.28 Aligned_cols=171 Identities=17% Similarity=0.161 Sum_probs=86.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcc-cCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNAT-KAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~-~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
..+.+.|.--+||||++.+|+..-. .+-.|..|+.. .+.-+ -.|........+. .+ -.
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~~S-----TaAFDk~pqS~------eRgiTLDLGFS~~~v~~pa---rL-------pq 66 (522)
T KOG0461|consen 8 LNLGILGHVDSGKTTLARALSELGS-----TAAFDKHPQST------ERGITLDLGFSTMTVLSPA---RL-------PQ 66 (522)
T ss_pred eeeeeEeeccCchHHHHHHHHhhcc-----chhhccCCccc------ccceeEeecceeeeccccc---cc-------Cc
Confidence 4588999999999999999984321 11122212111 00001 0111111111111 00 01
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHHHHHhhh-hcCCcEEEEEEcCCcch-----hHHHHHHHHhccCCcCEEEeecCCCCC
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSE-ATNPDLVIFVMDSSIGQ-----AAFDQAQAFKQSVSVGAVIVTKMDGHA 254 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~-~~~~d~illvvda~~~~-----~~~~~~~~~~~~~~~~~lVinK~D~~~ 254 (344)
.+...+-+||+||... + ++.+.. +.--|..++|+|+..|. +.+-+.+.+-+ -.++|+||+|...
T Consensus 67 ~e~lq~tlvDCPGHas----L---IRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~---klvvvinkid~lp 136 (522)
T KOG0461|consen 67 GEQLQFTLVDCPGHAS----L---IRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCK---KLVVVINKIDVLP 136 (522)
T ss_pred cccceeEEEeCCCcHH----H---HHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhcc---ceEEEEecccccc
Confidence 1246678999999853 2 222322 22358999999998762 22222333322 2478899999865
Q ss_pred Chh---hHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhC----CCChhHHHHHHHhhC
Q 019214 255 KGG---GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLG----MGDWSGFMDKIHEVV 311 (344)
Q Consensus 255 ~~~---~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g----~g~i~~l~~~i~~~~ 311 (344)
... .+-+.......-+..+ .+....|...+|+.-| ++ +.+|.+.+.+.+
T Consensus 137 E~qr~ski~k~~kk~~KtLe~t-------~f~g~~PI~~vsa~~G~~~~~~-i~eL~e~l~s~i 192 (522)
T KOG0461|consen 137 ENQRASKIEKSAKKVRKTLEST-------GFDGNSPIVEVSAADGYFKEEM-IQELKEALESRI 192 (522)
T ss_pred chhhhhHHHHHHHHHHHHHHhc-------CcCCCCceeEEecCCCccchhH-HHHHHHHHHHhh
Confidence 421 1111111111111111 1223345566677777 56 888888888765
No 454
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.80 E-value=0.00011 Score=64.11 Aligned_cols=92 Identities=23% Similarity=0.332 Sum_probs=47.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchh--HHHHHhhcccCCcceeccCCCCCHHHHHHHH
Q 019214 98 KGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA--FDQLKQNATKAKIPFYGSYTESDPVRIAVEG 175 (344)
Q Consensus 98 ~~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~--~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~ 175 (344)
+..|..+++.|+||+||||++..+...+. +....+|+.|.+|... ++.+......... .........+....
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~----~~~~~~a~~~~~~~ 85 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVIDADEFRQFHPDYDELLKADPDEAS----ELTQKEASRLAEKL 85 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTH----HHHHHHHHHHHHHH
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEehHHHHHhccchhhhhhhhhhhhH----HHHHHHHHHHHHHH
Confidence 35678899999999999999999987665 6678889999876542 2222221000000 00111112233444
Q ss_pred HHHHHhCCCCEEEEcCCCCCc
Q 019214 176 VETFKKENCDLIIVDTSGRHK 196 (344)
Q Consensus 176 l~~~~~~~~d~vlIDT~G~~~ 196 (344)
++.+...++++++ ||+....
T Consensus 86 ~~~a~~~~~nii~-E~tl~~~ 105 (199)
T PF06414_consen 86 IEYAIENRYNIIF-EGTLSNP 105 (199)
T ss_dssp HHHHHHCT--EEE-E--TTSS
T ss_pred HHHHHHcCCCEEE-ecCCCCh
Confidence 5555566776554 9877644
No 455
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.79 E-value=0.0003 Score=65.67 Aligned_cols=38 Identities=32% Similarity=0.269 Sum_probs=34.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecC
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D 138 (344)
..++-|.||||+||||++..++...++.|.+++.||..
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E 92 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAE 92 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECcc
Confidence 46888999999999999999999999999999999874
No 456
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.79 E-value=0.00032 Score=68.34 Aligned_cols=128 Identities=16% Similarity=0.213 Sum_probs=71.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHH
Q 019214 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (344)
Q Consensus 99 ~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 178 (344)
.+|.+++++||||+|||||+..|...+.++-. +. ++ ..+.+.. +.
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti-----~~-i~--------------GPiTvvs---gK------------ 111 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTI-----DE-IR--------------GPITVVS---GK------------ 111 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHHHhhh-----hc-cC--------------CceEEee---cc------------
Confidence 35688899999999999999999977655310 00 00 0111111 10
Q ss_pred HHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch--hHHHHHHHHhcc-CCcCEEEeecCCCCCC
Q 019214 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQS-VSVGAVIVTKMDGHAK 255 (344)
Q Consensus 179 ~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~--~~~~~~~~~~~~-~~~~~lVinK~D~~~~ 255 (344)
.-.+-|+.||.-.+ .|..+ +.-+|++++++|+.-|. +..+.+..+..+ .+-..-|+|..|+-..
T Consensus 112 ----~RRiTflEcp~Dl~-------~miDv--aKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk~ 178 (1077)
T COG5192 112 ----TRRITFLECPSDLH-------QMIDV--AKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFKN 178 (1077)
T ss_pred ----eeEEEEEeChHHHH-------HHHhH--HHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecccccC
Confidence 23446788884322 12111 22379999999998773 333333333222 2223457899998654
Q ss_pred hhhHHHHH----------HHhCCCeEEEe
Q 019214 256 GGGALSAV----------AATKSPVIFIG 274 (344)
Q Consensus 256 ~~~~~~~~----------~~~~~pv~~~~ 274 (344)
...+...- ...|..++|++
T Consensus 179 ~stLr~~KKrlkhRfWtEiyqGaKlFyls 207 (1077)
T COG5192 179 PSTLRSIKKRLKHRFWTEIYQGAKLFYLS 207 (1077)
T ss_pred hHHHHHHHHHHhhhHHHHHcCCceEEEec
Confidence 32222111 12467777776
No 457
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.79 E-value=2.8e-05 Score=68.98 Aligned_cols=39 Identities=23% Similarity=0.253 Sum_probs=33.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH--cCCccEEeecCcCc
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQK--KGWKPALVCADTFR 141 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~--~g~~v~iv~~D~~~ 141 (344)
+|+|.|++||||||++..|+..+.. .+.++.+++.|-|-
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 4789999999999999999998875 56789999998764
No 458
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=97.78 E-value=0.0014 Score=58.50 Aligned_cols=166 Identities=16% Similarity=0.150 Sum_probs=82.1
Q ss_pred EEEEEcC-CCCCHHHHHHHHHHHHHHcCCccEEeec---C------cCcchhHHHHHhhcccC----C-cceeccCC---
Q 019214 103 VIMFVGL-QGSGKTTTCTKYAYYHQKKGWKPALVCA---D------TFRAGAFDQLKQNATKA----K-IPFYGSYT--- 164 (344)
Q Consensus 103 ii~ivG~-~GvGKTTl~~~La~~l~~~g~~v~iv~~---D------~~~~~~~~~l~~~~~~~----~-v~~~~~~~--- 164 (344)
.+.|+|. +|+|||+++..|+..|.++|.+|+..-. . .........+....... . .|+.....
T Consensus 4 ~ifIt~t~t~vGKT~vt~~L~~~l~~~g~~v~~~KPi~~g~~~~~~~~~~~D~~~l~~~~~~~~~~~~~~p~~~~~~~a~ 83 (231)
T PRK12374 4 RFFITGTDTSVGKTVVSRALLQALASQGKTVAGYKPVAKGSKETPEGLRNKDALVLQSVSSIELPYEAVNPIALSEEESS 83 (231)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEECccccCCccCCCCCchHHHHHHHHhcCCCCCHHhccCeecCCCcCh
Confidence 3666665 4999999999999999999998876432 1 00111122222221110 0 00000000
Q ss_pred --CCCHH--HHHHHHHHHHHhCCCCEEEEcCCCCCcchH---HHHHHHHHhhhhcCCcEEEEEEcCCcch--hHHHHHHH
Q 019214 165 --ESDPV--RIAVEGVETFKKENCDLIIVDTSGRHKQEA---ALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQA 235 (344)
Q Consensus 165 --~~~~~--~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~---~~~~~l~~~~~~~~~d~illvvda~~~~--~~~~~~~~ 235 (344)
..... ..+.+.++.+. ..+|+++||.+|-..... .....+ .... .-.+++|.+.+.+. ...-..+.
T Consensus 84 ~~~~~~i~~~~i~~~~~~l~-~~~D~VlVEGaGgl~~p~~~~~~~~d~---~~~~-~~pvilV~~~~lg~in~~lLt~~~ 158 (231)
T PRK12374 84 VAHSCPINYTLMSNGLANLS-EKVDHVVVEGTGGWRSLMNDLRPLSEW---VVQE-QLPVLMVVGIQEGCINHALLTAQA 158 (231)
T ss_pred HHcCCcCCHHHHHHHHHHHH-hhCCEEEEECCCCcceeccCcccHHHH---HHHh-CCCEEEEECCCcChHHHHHHHHHH
Confidence 01111 22344444443 589999999998321110 111111 1111 23577777766653 12222233
Q ss_pred Hhc-cCCcCEEEeecCCCCCChh-hHHHHH-HHhCCCeEEE
Q 019214 236 FKQ-SVSVGAVIVTKMDGHAKGG-GALSAV-AATKSPVIFI 273 (344)
Q Consensus 236 ~~~-~~~~~~lVinK~D~~~~~~-~~~~~~-~~~~~pv~~~ 273 (344)
+.. ...+.++|+|+++...... .....+ ...+.|+..+
T Consensus 159 l~~~~~~~~gvV~N~~~~~~~~~~~~~~~l~~~~~~~~lg~ 199 (231)
T PRK12374 159 IANDGLPLIGWVANRINPGLAHYAEIIDVLGKKLPAPLIGE 199 (231)
T ss_pred HHhCCCcEEEEEEeCccCchhhhhhHHHHHHHhcCCCEEEE
Confidence 333 4567799999998643211 112222 3356666554
No 459
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=0.00025 Score=60.41 Aligned_cols=126 Identities=21% Similarity=0.235 Sum_probs=70.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
..|+++|-+|||||-|+.+++ + |.|. ..+....|+.+....... ..
T Consensus 10 FKiiliGds~VGKtCL~~Rf~------~--------~~f~-------e~~~sTIGVDf~~rt~e~-------------~g 55 (205)
T KOG0084|consen 10 FKIILIGDSGVGKTCLLLRFK------D--------DTFT-------ESYISTIGVDFKIRTVEL-------------DG 55 (205)
T ss_pred EEEEEECCCCcChhhhhhhhc------c--------CCcc-------hhhcceeeeEEEEEEeee-------------cc
Confidence 568999999999999999988 2 2221 223333444442211100 00
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHHHHhh--hhcCCcEEEEEEcCCcchhH---HHHHHHHh---ccCCcCEEEeecCCCC
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEMRQVS--EATNPDLVIFVMDSSIGQAA---FDQAQAFK---QSVSVGAVIVTKMDGH 253 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l~~~~--~~~~~d~illvvda~~~~~~---~~~~~~~~---~~~~~~~lVinK~D~~ 253 (344)
....+-|=||||... .+++. ....++.+++|-|.+..... ........ ...-+..+|-||+|..
T Consensus 56 k~iKlQIWDTAGQER--------Frtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~ 127 (205)
T KOG0084|consen 56 KTIKLQIWDTAGQER--------FRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLT 127 (205)
T ss_pred eEEEEEeeeccccHH--------HhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccH
Confidence 133456789999832 22222 24578999999999864322 22222222 2222457899999986
Q ss_pred CCh----hhHHHHHHHhCCC
Q 019214 254 AKG----GGALSAVAATKSP 269 (344)
Q Consensus 254 ~~~----~~~~~~~~~~~~p 269 (344)
... ..........++|
T Consensus 128 ~~~~v~~~~a~~fa~~~~~~ 147 (205)
T KOG0084|consen 128 EKRVVSTEEAQEFADELGIP 147 (205)
T ss_pred hheecCHHHHHHHHHhcCCc
Confidence 432 2333444444544
No 460
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=97.77 E-value=6.1e-05 Score=72.00 Aligned_cols=40 Identities=28% Similarity=0.410 Sum_probs=36.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCc
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~ 139 (344)
+.++|.|+|++|+||||++.+|...|..+|++|++|-.|.
T Consensus 204 ~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh~~ 243 (366)
T PRK14489 204 APPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIKHSH 243 (366)
T ss_pred CccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEEECC
Confidence 4579999999999999999999999999999999998654
No 461
>PRK00098 GTPase RsgA; Reviewed
Probab=97.77 E-value=2.8e-05 Score=72.18 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYA 122 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La 122 (344)
.++++++|++||||||++|.|.
T Consensus 164 gk~~~~~G~sgvGKStlin~l~ 185 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALA 185 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHh
Confidence 3689999999999999999999
No 462
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=97.77 E-value=0.00014 Score=59.34 Aligned_cols=45 Identities=31% Similarity=0.403 Sum_probs=40.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcch
Q 019214 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG 143 (344)
Q Consensus 99 ~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~ 143 (344)
++.-+|-++|-+|+||||++.+|..+|.++|+-..+.|.|.-|.|
T Consensus 29 qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhG 73 (207)
T KOG0635|consen 29 QKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHG 73 (207)
T ss_pred CCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccc
Confidence 355789999999999999999999999999999999999987665
No 463
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.76 E-value=3.9e-05 Score=54.88 Aligned_cols=33 Identities=30% Similarity=0.355 Sum_probs=27.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeec
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~ 137 (344)
+|++.|++|+||||+++.|+..+ .+.++.+++.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l--~~~~~~~i~~ 33 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL--GGRSVVVLDE 33 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEeE
Confidence 47889999999999999999888 5667766653
No 464
>PRK04040 adenylate kinase; Provisional
Probab=97.76 E-value=4.1e-05 Score=66.20 Aligned_cols=26 Identities=31% Similarity=0.362 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQ 126 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~ 126 (344)
+++|+++|.||+||||++..|+..+.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999999998774
No 465
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=6e-05 Score=68.77 Aligned_cols=179 Identities=18% Similarity=0.155 Sum_probs=94.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHH-------HcCCccEEeecCc--CcchhHHHHHhhcccCCcceeccCCCCCHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQ-------KKGWKPALVCADT--FRAGAFDQLKQNATKAKIPFYGSYTESDPVRI 171 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~-------~~g~~v~iv~~D~--~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~ 171 (344)
.-.|.++|.---||||+..+|..-.. ++|-.+-+--.|. |+...-..-..+.+...++...... +
T Consensus 10 ~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~-----~- 83 (415)
T COG5257 10 EVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAET-----E- 83 (415)
T ss_pred ceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCc-----c-
Confidence 35689999999999999999984211 1233332222221 1111100001122222221100000 0
Q ss_pred HHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc---hhHHHHHHHH--hccCCcCEEE
Q 019214 172 AVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG---QAAFDQAQAF--KQSVSVGAVI 246 (344)
Q Consensus 172 ~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~---~~~~~~~~~~--~~~~~~~~lV 246 (344)
+ --.+-|+|+||.. .++..|..= +.--|..++|+.+... ....+-+.++ .. .+-.+++
T Consensus 84 -------l---~R~VSfVDaPGHe----~LMATMLsG--AAlMDgAlLvIaANEpcPQPQT~EHl~AleIig-ik~iiIv 146 (415)
T COG5257 84 -------L---VRRVSFVDAPGHE----TLMATMLSG--AALMDGALLVIAANEPCPQPQTREHLMALEIIG-IKNIIIV 146 (415)
T ss_pred -------E---EEEEEEeeCCchH----HHHHHHhcc--hhhhcceEEEEecCCCCCCCchHHHHHHHhhhc-cceEEEE
Confidence 0 1124599999974 344444221 1223778999998764 1222212111 11 2223677
Q ss_pred eecCCCCCChhhHHHHHHHhCCCeEEEecCCCC-CcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCC
Q 019214 247 VTKMDGHAKGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (344)
Q Consensus 247 inK~D~~~~~~~~~~~~~~~~~pv~~~~~g~~~-~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~ 313 (344)
=||+|+.++.....+.-... +.+ .......|.+++|+..+.+ ++.|++.|.++.+.
T Consensus 147 QNKIDlV~~E~AlE~y~qIk----------~FvkGt~Ae~aPIIPiSA~~~~N-IDal~e~i~~~Ipt 203 (415)
T COG5257 147 QNKIDLVSRERALENYEQIK----------EFVKGTVAENAPIIPISAQHKAN-IDALIEAIEKYIPT 203 (415)
T ss_pred ecccceecHHHHHHHHHHHH----------HHhcccccCCCceeeehhhhccC-HHHHHHHHHHhCCC
Confidence 89999987643332211100 111 1234456889999999999 99999999999864
No 466
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.75 E-value=3.6e-05 Score=73.38 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAY 123 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~ 123 (344)
+.++++|.+||||||++|.|..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~ 176 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLK 176 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHh
Confidence 4699999999999999999994
No 467
>PRK06893 DNA replication initiation factor; Validated
Probab=97.75 E-value=0.00017 Score=64.41 Aligned_cols=36 Identities=11% Similarity=0.012 Sum_probs=31.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeec
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~ 137 (344)
..+.+.||||+|||+++.+++..+..+|.++..++.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~ 75 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL 75 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH
Confidence 357899999999999999999999888888877765
No 468
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.74 E-value=0.00011 Score=65.56 Aligned_cols=43 Identities=28% Similarity=0.404 Sum_probs=36.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEE-eecCcCc
Q 019214 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPAL-VCADTFR 141 (344)
Q Consensus 99 ~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~i-v~~D~~~ 141 (344)
+++.+++|+|++|+||||++..|+..+...+..+.+ +..|.|.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~ 74 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFH 74 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEeccccc
Confidence 456899999999999999999999999887777777 8887654
No 469
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.74 E-value=0.00028 Score=63.25 Aligned_cols=39 Identities=18% Similarity=0.333 Sum_probs=34.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCc
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~ 139 (344)
...+.+.|+||+|||+++..++...++.|.++..++.+-
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 468999999999999999999988778899999999864
No 470
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.71 E-value=0.00022 Score=67.02 Aligned_cols=96 Identities=18% Similarity=0.145 Sum_probs=58.6
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHhhccccc--ccCCChHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCC
Q 019214 34 EITRALLQADVQFKLVREMQTNIKKIVNLDDL--AAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQG 111 (344)
Q Consensus 34 ~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~ii~ivG~~G 111 (344)
.+...+.++++...+...-.+......-.... ..+.++.+.... +.+....++..... .. .-+.+.|++|
T Consensus 122 ~i~~~~~~S~i~~~~~~~~F~nf~~~~y~~~~~~~~~~~~~~~~~~-~~~~~~~f~~~f~~------~~-~~Lll~G~~G 193 (329)
T PRK06835 122 LINLYYKQSNLKEILKEENFSNFNLNYYSDEKDDDEPLSPRKNMEK-ILEKCKNFIENFDK------NN-ENLLFYGNTG 193 (329)
T ss_pred HHHHHHHHcCCchHHHhCChhhCCccccCccccccCCCCHHHHHHH-HHHHHHHHHHHHhc------cC-CcEEEECCCC
Confidence 46677777888877777655544332110000 112234444322 33333334432211 11 3489999999
Q ss_pred CCHHHHHHHHHHHHHHcCCccEEeec
Q 019214 112 SGKTTTCTKYAYYHQKKGWKPALVCA 137 (344)
Q Consensus 112 vGKTTl~~~La~~l~~~g~~v~iv~~ 137 (344)
+|||.|+.++|..+...|++|..++.
T Consensus 194 tGKThLa~aIa~~l~~~g~~V~y~t~ 219 (329)
T PRK06835 194 TGKTFLSNCIAKELLDRGKSVIYRTA 219 (329)
T ss_pred CcHHHHHHHHHHHHHHCCCeEEEEEH
Confidence 99999999999999999999988876
No 471
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.71 E-value=0.0001 Score=59.05 Aligned_cols=68 Identities=22% Similarity=0.252 Sum_probs=42.0
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHhCC
Q 019214 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKEN 183 (344)
Q Consensus 104 i~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~ 183 (344)
|.+.||||+||||++..++..+ |..+.-+++.... .....+....+...+.+.....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l---~~~~~~i~~~~~~--------------------~~~~~~~~~~i~~~~~~~~~~~ 57 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL---GFPFIEIDGSELI--------------------SSYAGDSEQKIRDFFKKAKKSA 57 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT---TSEEEEEETTHHH--------------------TSSTTHHHHHHHHHHHHHHHTS
T ss_pred CEEECcCCCCeeHHHHHHHhhc---ccccccccccccc--------------------cccccccccccccccccccccc
Confidence 5789999999999999999776 5555555552110 0112223334444555554444
Q ss_pred -CCEEEEcCCCC
Q 019214 184 -CDLIIVDTSGR 194 (344)
Q Consensus 184 -~d~vlIDT~G~ 194 (344)
..+++||-...
T Consensus 58 ~~~vl~iDe~d~ 69 (132)
T PF00004_consen 58 KPCVLFIDEIDK 69 (132)
T ss_dssp TSEEEEEETGGG
T ss_pred cceeeeeccchh
Confidence 67888886543
No 472
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.00089 Score=67.37 Aligned_cols=99 Identities=18% Similarity=0.232 Sum_probs=59.7
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHhhcccccccCCChHHHHHHHHHHHHHh------------------hcCCCCCC
Q 019214 32 LNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCK------------------MLDPGKPS 93 (344)
Q Consensus 32 ~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~------------------~l~~~~~~ 93 (344)
+.+++.++...+++.++-.....++...- .+. +.+++..+.+...+|+.. .++....+
T Consensus 252 ~~~~~~kie~~~~p~evk~k~~~El~kL~---~m~-~~SaE~~ViRnYlDwll~lPW~~~sk~~~Dl~~a~~iLd~dHYG 327 (782)
T COG0466 252 VEELREKIEKLKLPKEAKEKAEKELKKLE---TMS-PMSAEATVIRNYLDWLLDLPWGKRSKDKLDLKKAEKILDKDHYG 327 (782)
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHh---cCC-CCCchHHHHHHHHHHHHhCCCccccchhhhHHHHHHHhcccccC
Confidence 57888888888888888777766666543 222 223333333333344322 22222211
Q ss_pred CC---------------CCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEE
Q 019214 94 FT---------------PKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPAL 134 (344)
Q Consensus 94 ~~---------------~~~~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~i 134 (344)
+. ...-+..++|+||||||||||+...+|.++.+.=.++++
T Consensus 328 LekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sL 383 (782)
T COG0466 328 LEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISL 383 (782)
T ss_pred chhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEec
Confidence 10 012234799999999999999999999988654334443
No 473
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.71 E-value=0.00025 Score=64.70 Aligned_cols=37 Identities=32% Similarity=0.553 Sum_probs=29.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCc
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~ 139 (344)
.|++.|.|||||||++..|...+...+.+|.+|+.|.
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~ 39 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDS 39 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccc
Confidence 5889999999999999999999999999999999743
No 474
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.71 E-value=4e-05 Score=66.69 Aligned_cols=37 Identities=27% Similarity=0.322 Sum_probs=31.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCc
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~ 141 (344)
+|+++|++||||||+++.|+..+ .+.++.+++.|.|.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~ 37 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDSYY 37 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEecccc
Confidence 48999999999999999999887 46688899998654
No 475
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.70 E-value=5.7e-05 Score=69.52 Aligned_cols=44 Identities=25% Similarity=0.264 Sum_probs=36.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCccEEeecCcCcc
Q 019214 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKK--GWKPALVCADTFRA 142 (344)
Q Consensus 99 ~~~~ii~ivG~~GvGKTTl~~~La~~l~~~--g~~v~iv~~D~~~~ 142 (344)
..+.+|+|.|++||||||++..|...+.+. +.+|.+++.|.|..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~ 105 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLH 105 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccc
Confidence 356899999999999999999998887642 45789999997643
No 476
>PHA02542 41 41 helicase; Provisional
Probab=97.70 E-value=0.00066 Score=66.86 Aligned_cols=39 Identities=10% Similarity=0.139 Sum_probs=35.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCc
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~ 139 (344)
.-.+++.|+||+||||++.++|...++.|++|++++.+-
T Consensus 190 G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM 228 (473)
T PHA02542 190 KTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEM 228 (473)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccC
Confidence 357888899999999999999999888899999999874
No 477
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.70 E-value=0.00022 Score=63.37 Aligned_cols=39 Identities=36% Similarity=0.468 Sum_probs=33.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCccEEeecCc
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKK-GWKPALVCADT 139 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~-g~~v~iv~~D~ 139 (344)
+.++.+.|+||+|||+++..++...+++ |.++..++.+.
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee 58 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEE 58 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecC
Confidence 3689999999999999999999888887 99999999864
No 478
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.69 E-value=0.00022 Score=61.03 Aligned_cols=76 Identities=26% Similarity=0.401 Sum_probs=47.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
.-+++.|++|+|||.++.+++..+..+|++|..++.+ ...+.++.. ..... ..+.++.+.
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~----~L~~~l~~~-----------~~~~~----~~~~~~~l~- 107 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITAS----DLLDELKQS-----------RSDGS----YEELLKRLK- 107 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHH----HHHHHHHCC-----------HCCTT----HCHHHHHHH-
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecC----ceecccccc-----------ccccc----hhhhcCccc-
Confidence 4599999999999999999999999999999988861 112222211 00000 012233443
Q ss_pred CCCCEEEEcCCCCCcch
Q 019214 182 ENCDLIIVDTSGRHKQE 198 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~ 198 (344)
.+|+++||--|.....
T Consensus 108 -~~dlLilDDlG~~~~~ 123 (178)
T PF01695_consen 108 -RVDLLILDDLGYEPLS 123 (178)
T ss_dssp -TSSCEEEETCTSS---
T ss_pred -cccEecccccceeeec
Confidence 7899999999976544
No 479
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.69 E-value=0.0002 Score=63.54 Aligned_cols=38 Identities=29% Similarity=0.331 Sum_probs=32.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcC------CccEEeecC
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKG------WKPALVCAD 138 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g------~~v~iv~~D 138 (344)
..++.|+|+||+|||+++..++......+ .+|..++.+
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e 62 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTE 62 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecC
Confidence 36899999999999999999998877666 777777775
No 480
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=97.69 E-value=0.0015 Score=61.35 Aligned_cols=147 Identities=18% Similarity=0.259 Sum_probs=87.2
Q ss_pred CCeEEEEEcCC-CCCHHHHHHHHHHHHHH-cCCccEEeecCcCcc-hhH-----------------HHH---------Hh
Q 019214 100 KPSVIMFVGLQ-GSGKTTTCTKYAYYHQK-KGWKPALVCADTFRA-GAF-----------------DQL---------KQ 150 (344)
Q Consensus 100 ~~~ii~ivG~~-GvGKTTl~~~La~~l~~-~g~~v~iv~~D~~~~-~~~-----------------~~l---------~~ 150 (344)
+.+.++|+|.. |||=||++.++|..++. .+..|.+++.|.+.. ++. +.+ ..
T Consensus 103 ~~r~iafl~akgg~g~stlA~n~a~~l~~~~~~~v~L~DL~~~~G~~~~~l~~~~a~~i~~~~~~peRLDq~lld~~~~~ 182 (366)
T COG4963 103 QGRELAFLGAKGGVGTSTLAHNLAKGLAILSGAAVLLVDLDLQGGTAALYLDQDPAFGIAEAVKQPERLDQVLLDSLLTR 182 (366)
T ss_pred hceEEEEEeecCCcchHHHHHHHHHHHhhhcCCcEEEEEcCCCCcchhhhcCCCchhhHHHHhcCHHHhhHHHHHHHHhc
Confidence 45789999766 99999999999999975 689999999996332 211 011 00
Q ss_pred hcccCCcceeccCCCCCH-HHH---HHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc
Q 019214 151 NATKAKIPFYGSYTESDP-VRI---AVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG 226 (344)
Q Consensus 151 ~~~~~~v~~~~~~~~~~~-~~~---~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~ 226 (344)
.+ .+..+......... .++ ....+.......||++++|-|-.. . +.... + ...+|.+++|++.+..
T Consensus 183 ~~--~~l~ll~a~~~~~~~~d~~~~~~~~Ll~~~~~~~~~vV~Dlp~~~-~--~~t~~---v--L~~Sd~iviv~e~sl~ 252 (366)
T COG4963 183 LA--SGLKLLAAPTELAKNYDLKTGAVERLLDLLRGSFDFVVVDLPNIW-T--DWTRQ---V--LSGSDEIVIVAEPSLA 252 (366)
T ss_pred cC--CCceeecCCcchhhhcccccchHHHHHHHhhccCCeEEEcCCCcc-c--hHHHH---H--HhcCCeEEEEecccHH
Confidence 11 11111111111100 011 111122223458999999999222 1 22111 1 2368999999998853
Q ss_pred -----hhHHHHHHHHhccCCcCEEEeecCCCCCCh
Q 019214 227 -----QAAFDQAQAFKQSVSVGAVIVTKMDGHAKG 256 (344)
Q Consensus 227 -----~~~~~~~~~~~~~~~~~~lVinK~D~~~~~ 256 (344)
.+.++..+.++...+...+|+||.+.....
T Consensus 253 slR~ak~lld~l~~~r~~~~~p~lv~n~~~~~~~~ 287 (366)
T COG4963 253 SLRNAKELLDELKRLRPNDPKPILVLNRVGVPKRP 287 (366)
T ss_pred HHHHHHHHHHHHHHhCCCCCCceEEeeecCCCCCC
Confidence 455566666666666668999999876543
No 481
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.00077 Score=67.70 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=28.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEE
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPAL 134 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~i 134 (344)
++++++|+|||||||||+...+|.+|.+.=.+..+
T Consensus 437 qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSv 471 (906)
T KOG2004|consen 437 QGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSV 471 (906)
T ss_pred CCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEec
Confidence 45899999999999999999999999765444443
No 482
>PLN02796 D-glycerate 3-kinase
Probab=97.69 E-value=0.00032 Score=65.71 Aligned_cols=42 Identities=33% Similarity=0.436 Sum_probs=36.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCc
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~ 141 (344)
++.+|+|+|++|+||||++..|...+...|.+++.++.|-+.
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY 140 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY 140 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence 568999999999999999999999887778888888887654
No 483
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=97.68 E-value=4.7e-05 Score=71.18 Aligned_cols=98 Identities=17% Similarity=0.123 Sum_probs=52.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccC-CcceeccCCCCCHHHHHHHHHHHHH
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKA-KIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~-~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
..+.|||.|||||||+.|++. ...+. +.+ .+++|+. ++.+... ...+.. .+.++.
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT------~~~a~-~aN-----------YPF~TIePN~Giv~v--~d~rl~----~L~~~~ 58 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALT------KAGAE-IAN-----------YPFCTIEPNVGVVYV--PDCRLD----ELAEIV 58 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHH------cCCcc-ccC-----------CCcccccCCeeEEec--CchHHH----HHHHhc
Confidence 358999999999999999999 44422 222 3455442 2211110 111111 111111
Q ss_pred h-----CCCCEEEEcCCCCCcchH---HHHHHHHHhhhhcCCcEEEEEEcCCc
Q 019214 181 K-----ENCDLIIVDTSGRHKQEA---ALFEEMRQVSEATNPDLVIFVMDSSI 225 (344)
Q Consensus 181 ~-----~~~d~vlIDT~G~~~~~~---~~~~~l~~~~~~~~~d~illvvda~~ 225 (344)
. ....+-|||.||.-.... .+..+ -+.....+|.++.|++++.
T Consensus 59 ~c~~k~~~~~ve~vDIAGLV~GAs~GeGLGNk--FL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 59 KCPPKIRPAPVEFVDIAGLVKGASKGEGLGNK--FLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred CCCCcEEeeeeEEEEecccCCCcccCCCcchH--HHHhhhhcCeEEEEEEecC
Confidence 1 123456999999744321 11111 1334456899999999973
No 484
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.67 E-value=5.4e-05 Score=65.72 Aligned_cols=39 Identities=33% Similarity=0.476 Sum_probs=33.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCc----cEEeecCcCc
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWK----PALVCADTFR 141 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~----v~iv~~D~~~ 141 (344)
+|+|.|++||||||++..|+..|...|.. +.++..|.|.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~ 43 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFY 43 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGB
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccc
Confidence 68999999999999999999999988776 6677777653
No 485
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.67 E-value=4.9e-05 Score=73.32 Aligned_cols=31 Identities=29% Similarity=0.406 Sum_probs=27.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeec
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~ 137 (344)
..+|.+||-||||||||+|.|. |.++.=|+.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLv------G~KkVsVS~ 344 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALV------GRKKVSVSS 344 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHh------cCceeeeec
Confidence 4789999999999999999999 877766666
No 486
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=97.66 E-value=0.00028 Score=57.26 Aligned_cols=110 Identities=20% Similarity=0.271 Sum_probs=64.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceec--cCCCCCHHHHHHHHHHHHHh
Q 019214 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYG--SYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 104 i~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~--~~~~~~~~~~~~~~l~~~~~ 181 (344)
.+|+|-||||||+|+..++.. +|. ..|.+..|+++.. .....
T Consensus 11 llIigDsgVGKssLl~rF~dd--------------tFs-------~sYitTiGvDfkirTv~i~G--------------- 54 (198)
T KOG0079|consen 11 LLIIGDSGVGKSSLLLRFADD--------------TFS-------GSYITTIGVDFKIRTVDING--------------- 54 (198)
T ss_pred HHeecCCcccHHHHHHHHhhc--------------ccc-------cceEEEeeeeEEEEEeecCC---------------
Confidence 567899999999999998832 221 2233334443311 11111
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH---HHHHHhccC--CcCEEEeecCCCCCC
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQSV--SVGAVIVTKMDGHAK 255 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~---~~~~~~~~~--~~~~lVinK~D~~~~ 255 (344)
+...+-|.||||.. .+..+..- ....++.+++|-|.+.+..... .++..+.+. -+..+|-||.|...+
T Consensus 55 ~~VkLqIwDtAGqE-----rFrtitst-yyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~R 127 (198)
T KOG0079|consen 55 DRVKLQIWDTAGQE-----RFRTITST-YYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPER 127 (198)
T ss_pred cEEEEEEeecccHH-----HHHHHHHH-HccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccc
Confidence 13556788999973 23333211 1346889999999988754333 333333332 245788999998765
No 487
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.65 E-value=0.0005 Score=65.16 Aligned_cols=109 Identities=18% Similarity=0.216 Sum_probs=56.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCccEEeecCcCcchhHHHHHhhcccCCcce-eccCCCCCHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKK-GWKPALVCADTFRAGAFDQLKQNATKAKIPF-YGSYTESDPVRIAVEGVET 178 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~-g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~-~~~~~~~~~~~~~~~~l~~ 178 (344)
...++|+||+|+||||+++.+...+... +.++..+ .||.- ...+ ..... .....+.+. ....++++.
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~ti-Edp~E-----~~~~----~~~~~i~q~evg~~~-~~~~~~l~~ 190 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITI-EDPIE-----YVHR----NKRSLINQREVGLDT-LSFANALRA 190 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEE-cCChh-----hhcc----CccceEEccccCCCC-cCHHHHHHH
Confidence 3679999999999999999999877643 3344333 33310 0000 00000 000001110 112334455
Q ss_pred HHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc
Q 019214 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG 226 (344)
Q Consensus 179 ~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~ 226 (344)
....++|++++|-+-- .+.... .+..+...+.++..+.+...
T Consensus 191 ~lr~~pd~i~vgEird----~~~~~~--~l~aa~tGh~v~~T~Ha~~~ 232 (343)
T TIGR01420 191 ALREDPDVILIGEMRD----LETVEL--ALTAAETGHLVFGTLHTNSA 232 (343)
T ss_pred hhccCCCEEEEeCCCC----HHHHHH--HHHHHHcCCcEEEEEcCCCH
Confidence 5556999999998742 121111 12223345667777777543
No 488
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.65 E-value=0.00045 Score=66.01 Aligned_cols=85 Identities=26% Similarity=0.265 Sum_probs=52.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceec--cCCCCCHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYG--SYTESDPVRIAVEGVET 178 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~--~~~~~~~~~~~~~~l~~ 178 (344)
..++.+.|+||+||||++..++..++..|.+|..++..-. .+++.....+.++.... .....+ ... .+..
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs----~~qi~~Ra~rlg~~~~~l~l~~e~~-le~---I~~~ 153 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEES----PEQIKLRADRLGISTENLYLLAETN-LED---ILAS 153 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcC----HHHHHHHHHHcCCCcccEEEEccCc-HHH---HHHH
Confidence 3688999999999999999999999888889998887421 22333323333322110 011111 222 2233
Q ss_pred HHhCCCCEEEEcCCC
Q 019214 179 FKKENCDLIIVDTSG 193 (344)
Q Consensus 179 ~~~~~~d~vlIDT~G 193 (344)
+...++++++||.-.
T Consensus 154 i~~~~~~lVVIDSIq 168 (372)
T cd01121 154 IEELKPDLVIIDSIQ 168 (372)
T ss_pred HHhcCCcEEEEcchH
Confidence 344589999999843
No 489
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.64 E-value=0.0012 Score=59.00 Aligned_cols=39 Identities=21% Similarity=0.176 Sum_probs=35.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCccEEeecCc
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKK-GWKPALVCADT 139 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~-g~~v~iv~~D~ 139 (344)
..++++.|+||+||||++..++..++.+ |.+|+.++.+-
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~ 52 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM 52 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCC
Confidence 3689999999999999999999998877 99999999864
No 490
>COG2403 Predicted GTPase [General function prediction only]
Probab=97.64 E-value=0.00042 Score=64.48 Aligned_cols=136 Identities=21% Similarity=0.294 Sum_probs=79.2
Q ss_pred eEEEEEcCC-CCCHHHHHHHHHHHHHHcCCccEEeecC-cCcch----hHHHHHhhcccCC--------------cce-e
Q 019214 102 SVIMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVCAD-TFRAG----AFDQLKQNATKAK--------------IPF-Y 160 (344)
Q Consensus 102 ~ii~ivG~~-GvGKTTl~~~La~~l~~~g~~v~iv~~D-~~~~~----~~~~l~~~~~~~~--------------v~~-~ 160 (344)
.+++++|.. |+|||++...++..|...|+++++|... +++.. +.+.+........ ++- .
T Consensus 127 PviaV~atrtg~GKsaVS~~v~r~l~ergyrv~vVrhPmiy~~~~ieitve~~~k~edld~ha~t~eereeye~~I~tg~ 206 (449)
T COG2403 127 PVIAVTATRTGVGKSAVSRYVARLLRERGYRVCVVRHPMIYRGDRIEITVERLAKLEDLDRHAATDEEREEYESYIPTGG 206 (449)
T ss_pred ceEEEEEeccccchhHHHHHHHHHHHHcCCceEEEecCceecCCchhhhHHHHhCHhhccccccchhhHHHHhhcccccc
Confidence 578888765 9999999999999999999999998773 33322 1222222221111 000 1
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc-hhHHHHHHHHhcc
Q 019214 161 GSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG-QAAFDQAQAFKQS 239 (344)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~-~~~~~~~~~~~~~ 239 (344)
....+.+....+.++-+ ..|+|+.|..|..-+ ...+|..+.|+||.+. .+.......++-.
T Consensus 207 ~vlAGvdy~~vlke~~~-----~aD~IlwdGgnndfP-------------fvkpd~~Ivvvda~rpg~ei~~~pGe~~ir 268 (449)
T COG2403 207 GVLAGVDYGTVLKEGEK-----EADFILWDGGNNDFP-------------FVKPDLHIVVVDALRPGEEIGSFPGELRIR 268 (449)
T ss_pred ceEeeeeHHHHHHHHhh-----hccEEEEeCCCCCCC-------------cccCCeeEEEecCCCCchhhccCCCceeee
Confidence 11222233333333222 348999998776432 2358999999999863 3221111111111
Q ss_pred CCcCEEEeecCCCCCCh
Q 019214 240 VSVGAVIVTKMDGHAKG 256 (344)
Q Consensus 240 ~~~~~lVinK~D~~~~~ 256 (344)
-.+.+|+||+|.....
T Consensus 269 -lAD~VIItkveea~~~ 284 (449)
T COG2403 269 -LADLVIITKVEEAMAE 284 (449)
T ss_pred -eccEEEEecccccchH
Confidence 1367899999987654
No 491
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.64 E-value=0.00034 Score=69.41 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=35.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCc
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~ 139 (344)
..++.+.|+||+||||++..++...+++|.++..++.+-
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eE 301 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENACANKERAILFAYEE 301 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeC
Confidence 467889999999999999999999999999999998864
No 492
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.63 E-value=0.00025 Score=57.24 Aligned_cols=38 Identities=24% Similarity=0.225 Sum_probs=32.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCc
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~ 139 (344)
..+.++|+||+||||++..++..+...+..+..+++..
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~ 57 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASD 57 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhh
Confidence 46889999999999999999998887778888887744
No 493
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=97.63 E-value=0.00023 Score=61.34 Aligned_cols=40 Identities=20% Similarity=0.231 Sum_probs=31.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHH----------cCCccEEeecCcCc
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQK----------KGWKPALVCADTFR 141 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~----------~g~~v~iv~~D~~~ 141 (344)
..+.++|++|+||||++..++..+.. .+.+|+.++.+-..
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~ 82 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE 82 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH
Confidence 57899999999999999999999876 56789999887543
No 494
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.62 E-value=0.00065 Score=56.14 Aligned_cols=36 Identities=25% Similarity=0.401 Sum_probs=29.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcch
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG 143 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~ 143 (344)
+++++|+|||||||++..|+..+ ...+++.|..+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~-----~~~~i~~D~~~~~ 36 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL-----GAPFIDGDDLHPP 36 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc-----CCEEEeCcccccH
Confidence 37889999999999999999653 4567888887754
No 495
>PRK00784 cobyric acid synthase; Provisional
Probab=97.62 E-value=0.0031 Score=62.66 Aligned_cols=35 Identities=20% Similarity=0.330 Sum_probs=29.1
Q ss_pred eEEEEEcCC-CCCHHHHHHHHHHHHHHcCCccEEee
Q 019214 102 SVIMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVC 136 (344)
Q Consensus 102 ~ii~ivG~~-GvGKTTl~~~La~~l~~~g~~v~iv~ 136 (344)
+.+.|+|.. |||||+++..|+..|.++|++|...-
T Consensus 3 ~~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~K 38 (488)
T PRK00784 3 KALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFK 38 (488)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEeccc
Confidence 347888875 99999999999999999998776443
No 496
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.00032 Score=65.72 Aligned_cols=26 Identities=35% Similarity=0.397 Sum_probs=22.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHH
Q 019214 98 KGKPSVIMFVGLQGSGKTTTCTKYAY 123 (344)
Q Consensus 98 ~~~~~ii~ivG~~GvGKTTl~~~La~ 123 (344)
+|-...++++|.+|.||||++|.|..
T Consensus 18 kG~~ftlmvvG~sGlGKsTfiNsLf~ 43 (366)
T KOG2655|consen 18 KGFDFTLMVVGESGLGKSTFINSLFL 43 (366)
T ss_pred cCCceEEEEecCCCccHHHHHHHHHh
Confidence 34557899999999999999999883
No 497
>PTZ00301 uridine kinase; Provisional
Probab=97.60 E-value=0.00011 Score=64.63 Aligned_cols=41 Identities=27% Similarity=0.344 Sum_probs=33.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHH-cCC-ccEEeecCcCc
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQK-KGW-KPALVCADTFR 141 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~-~g~-~v~iv~~D~~~ 141 (344)
..+|+|.|+|||||||++.+|+..+.. .|- .+.++..|.|-
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy 45 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYY 45 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCc
Confidence 378999999999999999999988854 343 46688888764
No 498
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.60 E-value=9.2e-05 Score=64.50 Aligned_cols=42 Identities=33% Similarity=0.428 Sum_probs=37.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCc
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~ 141 (344)
++.+++++|++|+||||++..|+..+...|..+.+++.|..+
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~ 64 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR 64 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH
Confidence 457999999999999999999999998888888888887755
No 499
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.60 E-value=0.00032 Score=65.05 Aligned_cols=36 Identities=36% Similarity=0.530 Sum_probs=29.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCc
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~ 141 (344)
++|+++|+|||||||++..|+..+. ....++.|.++
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~----~~~~l~~D~~r 38 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNP----KAVNVNRDDLR 38 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCC----CCEEEeccHHH
Confidence 6788899999999999999996542 56777877654
No 500
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.60 E-value=0.0004 Score=57.97 Aligned_cols=160 Identities=19% Similarity=0.180 Sum_probs=86.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHH--cCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQK--KGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~--~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
..++|.|+-++||||++-++-..+.. .|.++.=+.. ...-....+++
T Consensus 18 y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~-----------tvgLnig~i~v-------------------- 66 (197)
T KOG0076|consen 18 YSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITP-----------TVGLNIGTIEV-------------------- 66 (197)
T ss_pred hhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeec-----------ccceeecceee--------------------
Confidence 56899999999999999988876653 1222211111 00000011111
Q ss_pred HhCCCCEEEEcCCCCCcchHHHHHHHHHhhh--hcCCcEEEEEEcCCcchhHHHHHHHHhc-------cCCcCEEEeecC
Q 019214 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSE--ATNPDLVIFVMDSSIGQAAFDQAQAFKQ-------SVSVGAVIVTKM 250 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~--~~~~d~illvvda~~~~~~~~~~~~~~~-------~~~~~~lVinK~ 250 (344)
..-.+.|+|..|.-. ++++-. .-.++.+++|+|++......+....|.+ .--+..+..||-
T Consensus 67 --~~~~l~fwdlgGQe~--------lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankq 136 (197)
T KOG0076|consen 67 --CNAPLSFWDLGGQES--------LRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQ 136 (197)
T ss_pred --ccceeEEEEcCChHH--------HHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchh
Confidence 134568999988732 222211 2247899999999874222221111111 112335568999
Q ss_pred CCCCChhh-HHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCCC
Q 019214 251 DGHAKGGG-ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMD 314 (344)
Q Consensus 251 D~~~~~~~-~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~~ 314 (344)
|....... .+.... + .++.+ -++..+..++|++.|+| +.+=++++...++.+
T Consensus 137 d~q~~~~~~El~~~~--~-------~~e~~--~~rd~~~~pvSal~geg-v~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 137 DLQNAMEAAELDGVF--G-------LAELI--PRRDNPFQPVSALTGEG-VKEGIEWLVKKLEKN 189 (197)
T ss_pred hhhhhhhHHHHHHHh--h-------hhhhc--CCccCccccchhhhccc-HHHHHHHHHHHHhhc
Confidence 98654211 111111 0 00111 12345667899999999 998888887766543
Done!