Query 019214
Match_columns 344
No_of_seqs 265 out of 3106
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 12:39:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019214.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019214hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dm5_A SRP54, signal recogniti 100.0 2.2E-52 7.5E-57 400.9 40.7 339 1-342 1-341 (443)
2 3kl4_A SRP54, signal recogniti 100.0 7.7E-49 2.6E-53 376.5 34.8 333 9-342 5-341 (433)
3 2xxa_A Signal recognition part 100.0 5.8E-45 2E-49 351.4 35.7 339 3-342 2-342 (433)
4 2j37_W Signal recognition part 100.0 4.5E-46 1.5E-50 364.0 23.6 340 1-342 1-340 (504)
5 2ffh_A Protein (FFH); SRP54, s 100.0 1.2E-43 4E-48 340.2 37.3 331 3-341 2-332 (425)
6 2v3c_C SRP54, signal recogniti 100.0 1.1E-44 3.7E-49 349.4 28.5 335 3-341 1-337 (432)
7 1j8m_F SRP54, signal recogniti 100.0 3.9E-39 1.3E-43 296.8 34.2 293 4-297 1-296 (297)
8 3e70_C DPA, signal recognition 100.0 1.4E-36 4.8E-41 283.1 32.5 295 3-298 8-326 (328)
9 1ls1_A Signal recognition part 100.0 7.8E-36 2.7E-40 274.9 34.9 294 3-298 2-295 (295)
10 1zu4_A FTSY; GTPase, signal re 100.0 1.1E-35 3.8E-40 276.4 32.9 285 3-297 11-311 (320)
11 1vma_A Cell division protein F 100.0 8.7E-36 3E-40 275.1 31.7 278 3-297 23-306 (306)
12 2yhs_A FTSY, cell division pro 100.0 1E-33 3.5E-38 273.5 29.2 278 13-298 213-496 (503)
13 1rj9_A FTSY, signal recognitio 100.0 6.7E-33 2.3E-37 255.9 26.0 283 3-297 4-304 (304)
14 2og2_A Putative signal recogni 100.0 9.3E-32 3.2E-36 252.8 33.2 287 3-296 57-359 (359)
15 3b9q_A Chloroplast SRP recepto 100.0 7.5E-31 2.6E-35 242.1 32.8 286 3-296 7-302 (302)
16 2px0_A Flagellar biosynthesis 100.0 3.7E-29 1.3E-33 230.2 26.3 256 27-296 37-296 (296)
17 3p32_A Probable GTPase RV1496/ 99.7 6.7E-18 2.3E-22 159.2 10.1 190 100-312 78-283 (355)
18 3gee_A MNME, tRNA modification 99.7 4.5E-18 1.5E-22 165.8 -1.9 155 102-312 234-397 (476)
19 2p67_A LAO/AO transport system 99.6 9.6E-16 3.3E-20 143.6 10.2 189 100-311 55-259 (341)
20 2www_A Methylmalonic aciduria 99.6 1.4E-15 5E-20 142.8 11.4 186 101-311 74-277 (349)
21 3iev_A GTP-binding protein ERA 99.6 6E-16 2.1E-20 143.0 7.8 164 99-313 8-182 (308)
22 1yrb_A ATP(GTP)binding protein 99.6 5.2E-16 1.8E-20 139.5 5.5 205 100-311 13-255 (262)
23 3geh_A MNME, tRNA modification 99.6 7.7E-17 2.6E-21 156.5 0.1 177 77-312 202-383 (462)
24 1wf3_A GTP-binding protein; GT 99.6 4.1E-15 1.4E-19 136.9 10.0 160 101-312 7-172 (301)
25 2qm8_A GTPase/ATPase; G protei 99.5 3.9E-14 1.3E-18 132.4 12.3 191 100-312 54-260 (337)
26 1xzp_A Probable tRNA modificat 99.5 2.8E-16 9.7E-21 153.2 -4.5 153 102-311 244-403 (482)
27 1ega_A Protein (GTP-binding pr 99.5 4.9E-14 1.7E-18 129.7 9.9 164 100-312 7-174 (301)
28 2wsm_A Hydrogenase expression/ 99.5 9.3E-15 3.2E-19 127.8 4.4 177 100-312 29-213 (221)
29 2hjg_A GTP-binding protein ENG 99.5 2.5E-14 8.7E-19 138.3 7.3 157 102-312 4-164 (436)
30 3iby_A Ferrous iron transport 99.5 1.2E-13 4E-18 124.2 11.1 142 102-279 2-154 (256)
31 4dzz_A Plasmid partitioning pr 99.5 1.2E-12 4.1E-17 112.9 17.0 152 102-271 2-162 (206)
32 4dhe_A Probable GTP-binding pr 99.5 3.8E-14 1.3E-18 123.9 6.1 168 100-314 28-212 (223)
33 3i8s_A Ferrous iron transport 99.5 1.5E-13 5E-18 124.8 9.5 137 102-274 4-149 (274)
34 2hjg_A GTP-binding protein ENG 99.4 6.1E-14 2.1E-18 135.6 6.6 163 100-311 174-347 (436)
35 3end_A Light-independent proto 99.4 2.4E-12 8.1E-17 118.5 16.9 164 99-272 39-242 (307)
36 1mky_A Probable GTP-binding pr 99.4 6.8E-14 2.3E-18 135.4 6.6 157 102-311 2-164 (439)
37 3pqc_A Probable GTP-binding pr 99.4 2.1E-13 7.2E-18 116.1 8.9 161 100-312 22-193 (195)
38 3la6_A Tyrosine-protein kinase 99.4 3.7E-12 1.3E-16 116.2 17.3 148 100-255 91-269 (286)
39 3ea0_A ATPase, para family; al 99.4 1.8E-12 6.2E-17 115.0 14.7 164 100-273 3-204 (245)
40 4dcu_A GTP-binding protein ENG 99.4 4.8E-14 1.7E-18 137.1 4.7 158 101-312 23-184 (456)
41 4dcu_A GTP-binding protein ENG 99.4 2E-13 6.7E-18 132.8 8.8 164 99-311 193-367 (456)
42 3k53_A Ferrous iron transport 99.4 3.2E-13 1.1E-17 122.3 9.6 193 102-334 4-221 (271)
43 2gj8_A MNME, tRNA modification 99.4 2.9E-13 1E-17 113.9 7.7 156 101-313 4-166 (172)
44 1hyq_A MIND, cell division inh 99.4 6.3E-12 2.1E-16 112.9 16.9 161 102-271 3-193 (263)
45 1svi_A GTP-binding protein YSX 99.4 5.2E-13 1.8E-17 113.9 9.3 159 100-311 22-193 (195)
46 3cio_A ETK, tyrosine-protein k 99.4 1.6E-11 5.6E-16 112.7 19.5 147 100-254 103-280 (299)
47 2dyk_A GTP-binding protein; GT 99.4 5.8E-13 2E-17 109.7 8.8 155 102-312 2-161 (161)
48 2ph1_A Nucleotide-binding prot 99.4 4.7E-12 1.6E-16 114.0 15.1 146 101-252 18-194 (262)
49 3bfv_A CAPA1, CAPB2, membrane 99.4 1.2E-11 4E-16 112.1 17.5 147 100-254 81-258 (271)
50 1cp2_A CP2, nitrogenase iron p 99.4 6.7E-12 2.3E-16 113.1 15.9 165 102-271 2-205 (269)
51 3a1s_A Iron(II) transport prot 99.4 3.6E-13 1.2E-17 121.2 7.1 189 101-329 5-215 (258)
52 2afh_E Nitrogenase iron protei 99.4 2.5E-11 8.7E-16 110.6 19.0 165 101-271 2-208 (289)
53 3k9g_A PF-32 protein; ssgcid, 99.4 3.8E-12 1.3E-16 114.7 13.2 161 99-271 25-227 (267)
54 3q9l_A Septum site-determining 99.4 1.4E-11 4.6E-16 110.3 16.5 162 102-271 3-208 (260)
55 1g3q_A MIND ATPase, cell divis 99.4 1.5E-11 5.2E-16 108.4 16.5 161 102-271 3-194 (237)
56 2oze_A ORF delta'; para, walke 99.4 6.5E-12 2.2E-16 115.0 14.4 144 102-254 35-226 (298)
57 2e87_A Hypothetical protein PH 99.4 4.5E-12 1.6E-16 119.3 12.7 156 100-311 166-334 (357)
58 2xtp_A GTPase IMAP family memb 99.4 8.6E-13 2.9E-17 118.5 7.3 165 100-312 21-207 (260)
59 2wji_A Ferrous iron transport 99.3 3.4E-12 1.2E-16 106.3 10.1 155 102-311 4-163 (165)
60 1jwy_B Dynamin A GTPase domain 99.3 5.2E-12 1.8E-16 116.4 11.7 118 183-313 130-262 (315)
61 3cwq_A Para family chromosome 99.3 1.8E-11 6.2E-16 106.4 14.5 142 103-271 2-153 (209)
62 1mky_A Probable GTP-binding pr 99.3 1.3E-12 4.4E-17 126.5 7.9 163 100-311 179-353 (439)
63 3kjh_A CO dehydrogenase/acetyl 99.3 5.6E-12 1.9E-16 111.9 10.5 140 104-252 3-195 (254)
64 3fwy_A Light-independent proto 99.3 3.2E-11 1.1E-15 111.4 15.9 165 99-273 46-250 (314)
65 3b1v_A Ferrous iron uptake tra 99.3 1.5E-11 5.1E-16 111.4 13.3 144 101-281 3-153 (272)
66 2qtf_A Protein HFLX, GTP-bindi 99.3 6.4E-12 2.2E-16 118.5 10.3 159 101-311 179-352 (364)
67 1wcv_1 SOJ, segregation protei 99.3 1.5E-11 5.1E-16 110.3 12.1 160 100-270 5-201 (257)
68 2lkc_A Translation initiation 99.3 2.4E-12 8.1E-17 108.0 5.4 160 100-311 7-169 (178)
69 2hf9_A Probable hydrogenase ni 99.3 1.1E-12 3.8E-17 114.9 3.4 176 101-311 38-222 (226)
70 2aka_B Dynamin-1; fusion prote 99.3 4.9E-12 1.7E-16 115.6 7.8 113 183-309 124-249 (299)
71 3izq_1 HBS1P, elongation facto 99.3 1E-10 3.5E-15 117.3 18.0 66 183-254 244-319 (611)
72 2qu8_A Putative nucleolar GTP- 99.3 4.3E-12 1.5E-16 111.5 6.9 159 100-312 28-204 (228)
73 2xj4_A MIPZ; replication, cell 99.2 4.1E-10 1.4E-14 102.6 18.5 115 102-225 5-137 (286)
74 3lxw_A GTPase IMAP family memb 99.2 4E-11 1.4E-15 107.0 11.0 165 100-312 20-207 (247)
75 1fzq_A ADP-ribosylation factor 99.2 6E-11 2E-15 100.3 11.3 156 100-312 15-177 (181)
76 2h17_A ADP-ribosylation factor 99.2 2.3E-11 7.7E-16 102.7 8.4 151 100-310 20-180 (181)
77 2wjg_A FEOB, ferrous iron tran 99.2 2.8E-11 9.6E-16 102.5 9.0 159 101-314 7-170 (188)
78 2nzj_A GTP-binding protein REM 99.2 6.5E-11 2.2E-15 98.7 10.9 153 101-311 4-167 (175)
79 2ce2_X GTPase HRAS; signaling 99.2 1.3E-10 4.4E-15 95.6 12.4 104 183-311 50-163 (166)
80 3ug7_A Arsenical pump-driving 99.2 3.5E-10 1.2E-14 106.0 16.6 39 102-140 27-65 (349)
81 2x2e_A Dynamin-1; nitration, h 99.2 1.1E-11 3.9E-16 116.4 6.5 115 183-309 129-254 (353)
82 1upt_A ARL1, ADP-ribosylation 99.2 2E-11 6.9E-16 101.4 6.8 154 100-312 6-168 (171)
83 3pg5_A Uncharacterized protein 99.2 1.1E-10 3.6E-15 110.1 12.4 42 102-143 2-44 (361)
84 1r8s_A ADP-ribosylation factor 99.2 9.3E-11 3.2E-15 96.8 10.5 152 103-312 2-161 (164)
85 1m2o_B GTP-binding protein SAR 99.2 3.3E-11 1.1E-15 102.8 7.3 159 101-310 23-189 (190)
86 3tr5_A RF-3, peptide chain rel 99.2 4.2E-11 1.4E-15 118.1 9.1 82 183-270 81-166 (528)
87 2g6b_A RAS-related protein RAB 99.2 8.7E-11 3E-15 98.5 9.8 155 100-312 9-173 (180)
88 2erx_A GTP-binding protein DI- 99.2 2E-10 6.8E-15 95.2 11.8 152 102-313 4-167 (172)
89 1f6b_A SAR1; gtpases, N-termin 99.2 2.5E-11 8.5E-16 104.3 6.4 163 101-311 25-197 (198)
90 1zd9_A ADP-ribosylation factor 99.2 4.8E-11 1.6E-15 101.4 7.9 158 100-313 21-185 (188)
91 1moz_A ARL1, ADP-ribosylation 99.2 3.1E-11 1E-15 101.7 6.5 154 100-311 17-178 (183)
92 3tw8_B RAS-related protein RAB 99.2 4.1E-11 1.4E-15 100.3 7.3 152 101-311 9-169 (181)
93 3qq5_A Small GTP-binding prote 99.2 8.8E-12 3E-16 119.5 3.3 159 100-311 33-194 (423)
94 3zq6_A Putative arsenical pump 99.2 3.3E-10 1.1E-14 105.1 13.8 38 102-139 15-52 (324)
95 1r2q_A RAS-related protein RAB 99.2 1.4E-10 4.6E-15 96.0 10.1 106 183-313 54-169 (170)
96 2cxx_A Probable GTP-binding pr 99.2 8.5E-11 2.9E-15 99.4 9.1 158 103-312 3-183 (190)
97 2h57_A ADP-ribosylation factor 99.2 3.3E-11 1.1E-15 102.4 6.5 155 100-312 20-186 (190)
98 1zj6_A ADP-ribosylation factor 99.2 1.1E-10 3.9E-15 98.8 9.7 155 100-313 15-178 (187)
99 2woo_A ATPase GET3; tail-ancho 99.2 6.1E-10 2.1E-14 103.5 15.3 39 102-140 20-58 (329)
100 1u8z_A RAS-related protein RAL 99.1 2.2E-10 7.4E-15 94.5 10.9 150 102-311 5-165 (168)
101 1ky3_A GTP-binding protein YPT 99.1 1E-11 3.5E-16 104.2 2.8 156 100-311 7-176 (182)
102 2fg5_A RAB-22B, RAS-related pr 99.1 4.3E-11 1.5E-15 102.0 6.7 152 101-313 23-186 (192)
103 1c1y_A RAS-related protein RAP 99.1 8.5E-11 2.9E-15 97.1 8.1 151 102-311 4-165 (167)
104 2hxs_A RAB-26, RAS-related pro 99.1 1.9E-10 6.6E-15 96.1 10.3 151 101-312 6-172 (178)
105 4dsu_A GTPase KRAS, isoform 2B 99.1 2.3E-10 7.7E-15 96.6 10.8 150 102-311 5-164 (189)
106 3con_A GTPase NRAS; structural 99.1 1.1E-10 3.7E-15 99.0 8.6 150 102-311 22-181 (190)
107 1z0j_A RAB-22, RAS-related pro 99.1 4E-11 1.4E-15 99.4 5.7 152 102-312 7-168 (170)
108 1h65_A Chloroplast outer envel 99.1 2.7E-10 9.1E-15 102.9 11.6 120 101-255 39-169 (270)
109 3zvr_A Dynamin-1; hydrolase, D 99.1 5.5E-11 1.9E-15 120.9 7.7 114 183-309 149-274 (772)
110 4bas_A ADP-ribosylation factor 99.1 3.8E-11 1.3E-15 102.5 5.6 155 100-311 16-187 (199)
111 3tkl_A RAS-related protein RAB 99.1 1.2E-10 4.2E-15 99.0 8.8 152 101-311 16-177 (196)
112 2woj_A ATPase GET3; tail-ancho 99.1 4.6E-10 1.6E-14 105.4 13.4 39 102-140 19-59 (354)
113 3iqw_A Tail-anchored protein t 99.1 5.3E-10 1.8E-14 104.0 13.7 41 101-141 16-56 (334)
114 1byi_A Dethiobiotin synthase; 99.1 9.7E-09 3.3E-13 89.6 21.1 166 102-272 2-201 (224)
115 3q72_A GTP-binding protein RAD 99.1 4.1E-11 1.4E-15 99.1 5.5 149 102-311 3-162 (166)
116 2a9k_A RAS-related protein RAL 99.1 3.3E-10 1.1E-14 95.3 11.2 151 101-311 18-179 (187)
117 3clv_A RAB5 protein, putative; 99.1 3.9E-10 1.3E-14 96.0 11.7 103 184-311 93-202 (208)
118 1kao_A RAP2A; GTP-binding prot 99.1 2.2E-10 7.4E-15 94.4 9.8 150 102-311 4-164 (167)
119 3q85_A GTP-binding protein REM 99.1 1.7E-11 5.9E-16 101.7 2.9 152 102-311 3-165 (169)
120 3fkq_A NTRC-like two-domain pr 99.1 1.4E-09 4.7E-14 102.9 16.2 42 98-139 140-182 (373)
121 4a9a_A Ribosome-interacting GT 99.1 2.8E-10 9.6E-15 107.2 11.3 117 100-252 71-194 (376)
122 1z08_A RAS-related protein RAB 99.1 1.8E-10 6.1E-15 95.5 8.9 149 101-311 6-167 (170)
123 2bov_A RAla, RAS-related prote 99.1 5.2E-10 1.8E-14 95.9 12.1 151 101-311 14-175 (206)
124 2b6h_A ADP-ribosylation factor 99.1 1.9E-10 6.5E-15 98.2 9.2 156 100-312 28-190 (192)
125 2gf0_A GTP-binding protein DI- 99.1 5E-10 1.7E-14 95.4 11.8 155 100-314 7-172 (199)
126 2p5s_A RAS and EF-hand domain 99.1 5.7E-10 2E-14 95.5 12.1 153 100-311 27-195 (199)
127 1z0f_A RAB14, member RAS oncog 99.1 3.4E-10 1.2E-14 94.5 10.4 152 101-311 15-176 (179)
128 1ksh_A ARF-like protein 2; sma 99.1 6E-11 2E-15 100.3 5.7 156 100-312 17-179 (186)
129 2gf9_A RAS-related protein RAB 99.1 1.9E-10 6.6E-15 97.5 8.8 152 101-311 22-183 (189)
130 2j69_A Bacterial dynamin-like 99.1 1.4E-10 4.9E-15 118.1 9.3 34 101-140 69-102 (695)
131 3bc1_A RAS-related protein RAB 99.1 6.1E-10 2.1E-14 94.2 11.8 104 183-311 69-183 (195)
132 3ez9_A Para; DNA binding, wing 99.1 4.5E-10 1.5E-14 107.3 12.0 43 99-141 109-158 (403)
133 3t1o_A Gliding protein MGLA; G 99.1 2.3E-10 7.9E-15 97.1 9.0 105 183-311 73-190 (198)
134 2bcg_Y Protein YP2, GTP-bindin 99.1 2.5E-10 8.5E-15 98.2 9.2 153 101-312 8-170 (206)
135 1g16_A RAS-related protein SEC 99.1 2.1E-10 7.3E-15 94.9 8.4 151 102-311 4-163 (170)
136 2fh5_B SR-beta, signal recogni 99.1 2E-10 6.9E-15 99.4 8.6 168 101-310 7-213 (214)
137 2y8e_A RAB-protein 6, GH09086P 99.1 2.9E-10 9.8E-15 95.0 9.2 106 183-313 62-177 (179)
138 3lvq_E ARF-GAP with SH3 domain 99.1 1.8E-10 6.2E-15 113.0 9.2 158 101-315 322-486 (497)
139 2efe_B Small GTP-binding prote 99.1 4.4E-10 1.5E-14 94.2 10.3 154 101-313 12-175 (181)
140 1ek0_A Protein (GTP-binding pr 99.1 4.2E-10 1.4E-14 93.0 10.0 105 183-312 51-168 (170)
141 2x77_A ADP-ribosylation factor 99.1 8.8E-11 3E-15 99.6 5.8 155 100-311 21-182 (189)
142 3j2k_7 ERF3, eukaryotic polype 99.1 2.3E-10 7.8E-15 110.6 9.4 66 183-254 94-169 (439)
143 3sjy_A Translation initiation 99.1 2.4E-10 8.3E-15 109.2 9.4 112 184-313 75-192 (403)
144 2oil_A CATX-8, RAS-related pro 99.1 2.5E-10 8.5E-15 97.1 8.5 152 101-311 25-186 (193)
145 2il1_A RAB12; G-protein, GDP, 99.1 6.7E-11 2.3E-15 100.9 4.8 154 101-311 26-188 (192)
146 1zbd_A Rabphilin-3A; G protein 99.1 5.3E-10 1.8E-14 95.9 10.4 151 102-311 9-169 (203)
147 1lnz_A SPO0B-associated GTP-bi 99.1 1.1E-10 3.9E-15 108.9 6.3 156 103-313 160-330 (342)
148 4gzl_A RAS-related C3 botulinu 99.1 1.5E-11 5.3E-16 106.1 0.3 169 100-311 29-203 (204)
149 2h5e_A Peptide chain release f 99.1 2.7E-10 9.4E-15 112.3 9.0 135 101-255 13-149 (529)
150 1wms_A RAB-9, RAB9, RAS-relate 99.1 1.5E-10 5.2E-15 96.7 6.2 153 101-311 7-172 (177)
151 3cph_A RAS-related protein SEC 99.1 5.3E-10 1.8E-14 96.4 9.8 153 100-311 19-180 (213)
152 2fn4_A P23, RAS-related protei 99.1 1.4E-10 4.7E-15 97.1 5.8 152 100-311 8-170 (181)
153 2atv_A RERG, RAS-like estrogen 99.1 5.7E-10 1.9E-14 95.3 9.6 151 100-311 27-189 (196)
154 1z2a_A RAS-related protein RAB 99.1 3.2E-10 1.1E-14 93.7 7.8 152 101-311 5-165 (168)
155 3ez2_A Plasmid partition prote 99.1 1.4E-09 4.7E-14 103.7 13.2 43 99-141 106-155 (398)
156 2ged_A SR-beta, signal recogni 99.1 8.2E-10 2.8E-14 93.8 10.5 132 77-255 27-171 (193)
157 3izy_P Translation initiation 99.0 1.7E-11 5.8E-16 120.7 -0.3 162 100-312 3-167 (537)
158 4djt_A GTP-binding nuclear pro 99.0 4.6E-11 1.6E-15 103.8 2.5 158 100-312 10-174 (218)
159 1vg8_A RAS-related protein RAB 99.0 4.3E-11 1.5E-15 102.9 2.2 153 100-312 7-174 (207)
160 2a5j_A RAS-related protein RAB 99.0 6.6E-10 2.3E-14 94.4 9.6 152 101-311 21-182 (191)
161 2bme_A RAB4A, RAS-related prot 99.0 2.3E-10 7.8E-15 96.5 6.5 152 101-311 10-171 (186)
162 2yc2_C IFT27, small RAB-relate 99.0 2.1E-10 7.2E-15 98.4 6.3 154 101-311 20-190 (208)
163 1x3s_A RAS-related protein RAB 99.0 4.6E-10 1.6E-14 95.2 8.3 153 101-312 15-177 (195)
164 3oes_A GTPase rhebl1; small GT 99.0 2.6E-10 8.7E-15 97.9 6.7 152 100-311 23-185 (201)
165 3lxx_A GTPase IMAP family memb 99.0 7.7E-10 2.6E-14 97.9 10.0 121 100-254 28-159 (239)
166 2q3h_A RAS homolog gene family 99.0 2.4E-10 8.3E-15 97.8 6.5 153 100-311 19-193 (201)
167 2ew1_A RAS-related protein RAB 99.0 7.6E-10 2.6E-14 95.4 9.6 152 101-311 26-187 (201)
168 3def_A T7I23.11 protein; chlor 99.0 9.2E-10 3.1E-14 98.9 10.4 118 101-253 36-164 (262)
169 3o47_A ADP-ribosylation factor 99.0 2.5E-10 8.4E-15 106.2 6.7 155 101-312 165-326 (329)
170 3bwd_D RAC-like GTP-binding pr 99.0 2.7E-10 9.3E-15 95.6 6.3 152 101-311 8-179 (182)
171 3th5_A RAS-related C3 botulinu 98.6 2.7E-11 9.3E-16 104.3 0.0 120 183-310 77-202 (204)
172 2hup_A RAS-related protein RAB 99.0 1.6E-09 5.6E-14 93.0 11.2 153 101-311 29-191 (201)
173 3dpu_A RAB family protein; roc 99.0 1.8E-10 6.2E-15 114.1 5.7 67 183-255 97-165 (535)
174 2fv8_A H6, RHO-related GTP-bin 99.0 6.9E-11 2.4E-15 102.1 2.3 168 101-311 25-198 (207)
175 3gj0_A GTP-binding nuclear pro 99.0 6E-11 2E-15 103.5 1.9 153 100-311 14-173 (221)
176 1wb1_A Translation elongation 99.0 7E-10 2.4E-14 108.3 9.5 158 101-311 19-187 (482)
177 3t5g_A GTP-binding protein RHE 99.0 2.9E-10 1E-14 95.5 5.9 151 101-311 6-167 (181)
178 3t5d_A Septin-7; GTP-binding p 99.0 7.3E-10 2.5E-14 100.3 8.9 167 100-312 7-203 (274)
179 1mh1_A RAC1; GTP-binding, GTPa 99.0 2.2E-10 7.5E-15 96.4 5.1 123 183-313 52-180 (186)
180 3dz8_A RAS-related protein RAB 99.0 8E-10 2.7E-14 93.9 8.7 152 101-311 23-184 (191)
181 1ihu_A Arsenical pump-driving 99.0 3.1E-09 1.1E-13 106.4 14.2 41 100-140 7-47 (589)
182 2fu5_C RAS-related protein RAB 99.0 6.8E-10 2.3E-14 93.4 7.9 149 101-311 8-169 (183)
183 3cbq_A GTP-binding protein REM 99.0 9.8E-10 3.4E-14 94.1 9.0 153 101-311 23-186 (195)
184 2o52_A RAS-related protein RAB 99.0 1.9E-09 6.5E-14 92.5 10.8 152 101-311 25-186 (200)
185 2j1l_A RHO-related GTP-binding 99.0 3.2E-10 1.1E-14 98.5 5.9 169 100-311 33-207 (214)
186 2j0v_A RAC-like GTP-binding pr 99.0 5.2E-10 1.8E-14 96.6 7.2 154 101-313 9-180 (212)
187 3kkq_A RAS-related protein M-R 99.0 1.8E-09 6.2E-14 90.7 10.4 152 100-311 17-180 (183)
188 3io3_A DEHA2D07832P; chaperone 99.0 2.6E-09 8.7E-14 99.9 12.3 41 100-140 17-59 (348)
189 2atx_A Small GTP binding prote 99.0 2.3E-09 7.7E-14 91.2 10.8 166 101-310 18-190 (194)
190 2xex_A Elongation factor G; GT 99.0 2.3E-09 7.8E-14 109.2 12.5 130 100-255 9-142 (693)
191 2gco_A H9, RHO-related GTP-bin 99.0 6.1E-10 2.1E-14 95.6 6.9 167 101-310 25-197 (201)
192 3reg_A RHO-like small GTPase; 99.0 7.8E-10 2.7E-14 94.2 7.3 152 101-311 23-186 (194)
193 1z06_A RAS-related protein RAB 99.0 1.8E-09 6.2E-14 91.5 9.5 154 100-311 19-186 (189)
194 2f7s_A C25KG, RAS-related prot 99.0 1.5E-09 5E-14 94.1 9.1 104 183-311 83-197 (217)
195 2iwr_A Centaurin gamma 1; ANK 99.0 3.8E-10 1.3E-14 94.5 5.0 146 101-311 7-167 (178)
196 1pui_A ENGB, probable GTP-bind 99.0 8.6E-10 2.9E-14 95.0 7.2 163 100-313 25-199 (210)
197 3cpj_B GTP-binding protein YPT 99.0 2.5E-09 8.6E-14 93.3 10.2 153 101-312 13-175 (223)
198 3ihw_A Centg3; RAS, centaurin, 99.0 7.8E-10 2.7E-14 93.7 6.6 147 100-311 19-178 (184)
199 1g7s_A Translation initiation 99.0 1.6E-09 5.4E-14 108.2 9.7 118 184-311 70-216 (594)
200 2elf_A Protein translation elo 99.0 8.4E-10 2.9E-14 104.2 7.2 147 102-312 22-179 (370)
201 2c78_A Elongation factor TU-A; 99.0 5.8E-09 2E-13 99.7 13.2 127 100-254 10-142 (405)
202 2ywe_A GTP-binding protein LEP 99.0 2.6E-09 9E-14 106.4 11.1 109 183-313 72-184 (600)
203 3cb4_D GTP-binding protein LEP 98.9 2.7E-09 9.4E-14 106.4 11.0 109 183-313 70-182 (599)
204 2g3y_A GTP-binding protein GEM 98.9 4.9E-09 1.7E-13 91.1 11.3 151 101-311 37-201 (211)
205 1s0u_A EIF-2-gamma, translatio 98.9 2.4E-09 8.1E-14 102.5 9.8 112 184-313 81-198 (408)
206 1zo1_I IF2, translation initia 98.9 5.4E-10 1.9E-14 109.1 5.4 159 100-310 3-164 (501)
207 1d2e_A Elongation factor TU (E 98.9 4E-09 1.4E-13 100.5 10.9 127 102-254 4-133 (397)
208 3l0i_B RAS-related protein RAB 98.9 7.3E-11 2.5E-15 101.2 -1.2 153 100-312 32-195 (199)
209 3p26_A Elongation factor 1 alp 98.9 1.7E-08 5.8E-13 98.6 15.2 66 183-254 110-185 (483)
210 1kk1_A EIF2gamma; initiation o 98.9 1.5E-09 5.1E-14 103.9 7.2 112 184-313 83-200 (410)
211 3c5c_A RAS-like protein 12; GD 98.9 1.6E-09 5.4E-14 91.9 6.5 150 100-310 20-183 (187)
212 1dar_A EF-G, elongation factor 98.9 9.5E-09 3.2E-13 104.6 12.5 67 183-255 76-144 (691)
213 2qpt_A EH domain-containing pr 98.9 4.3E-09 1.5E-13 104.3 9.6 69 185-255 155-233 (550)
214 4dkx_A RAS-related protein RAB 98.9 3.3E-08 1.1E-12 86.2 13.9 105 183-312 61-175 (216)
215 3mca_A HBS1, elongation factor 98.9 5.8E-11 2E-15 118.7 -4.9 66 183-254 254-329 (592)
216 1wxq_A GTP-binding protein; st 98.8 8.9E-09 3E-13 98.0 10.2 20 103-122 2-21 (397)
217 1zun_B Sulfate adenylate trans 98.8 2.5E-08 8.6E-13 96.1 13.3 66 183-254 103-171 (434)
218 3t34_A Dynamin-related protein 98.8 1.2E-08 4E-13 95.9 10.5 92 183-274 135-241 (360)
219 2rdo_7 EF-G, elongation factor 98.8 4.3E-08 1.5E-12 99.9 15.3 66 183-254 81-148 (704)
220 2dy1_A Elongation factor G; tr 98.8 1.4E-08 4.6E-13 103.0 11.2 127 100-253 8-139 (665)
221 3igf_A ALL4481 protein; two-do 98.8 2.9E-08 9.9E-13 93.5 12.7 38 102-140 3-40 (374)
222 1m7b_A RND3/RHOE small GTP-bin 98.8 1.7E-09 6E-14 91.2 3.7 114 101-255 7-126 (184)
223 1nrj_B SR-beta, signal recogni 98.8 1.8E-08 6E-13 87.3 9.7 112 100-255 11-135 (218)
224 3r7w_A Gtpase1, GTP-binding pr 98.8 1.4E-08 4.7E-13 93.4 9.1 118 102-254 4-129 (307)
225 2cjw_A GTP-binding protein GEM 98.8 5.4E-09 1.8E-13 89.2 5.8 153 102-311 7-170 (192)
226 3j25_A Tetracycline resistance 98.8 1.8E-08 6.2E-13 101.6 10.0 128 102-254 3-133 (638)
227 1f60_A Elongation factor EEF1A 98.8 2.4E-08 8.4E-13 96.8 10.6 94 183-282 84-202 (458)
228 3avx_A Elongation factor TS, e 98.8 2.5E-08 8.5E-13 104.8 11.2 175 100-313 295-486 (1289)
229 1jny_A EF-1-alpha, elongation 98.8 1.2E-07 4.1E-12 91.4 15.2 66 183-254 83-158 (435)
230 3vqt_A RF-3, peptide chain rel 98.8 9.3E-09 3.2E-13 101.8 7.6 140 100-269 30-183 (548)
231 2zej_A Dardarin, leucine-rich 98.8 3.2E-09 1.1E-13 89.7 3.5 166 102-313 3-178 (184)
232 2wkq_A NPH1-1, RAS-related C3 98.7 4.8E-09 1.6E-13 96.8 4.5 168 101-311 155-328 (332)
233 1gwn_A RHO-related GTP-binding 98.7 4E-09 1.4E-13 91.0 3.6 113 101-254 28-146 (205)
234 2r8r_A Sensor protein; KDPD, P 98.7 7.6E-08 2.6E-12 83.9 11.1 43 102-144 7-49 (228)
235 1udx_A The GTP-binding protein 98.7 1.3E-08 4.5E-13 97.2 4.8 151 102-311 158-323 (416)
236 3llu_A RAS-related GTP-binding 98.6 1.1E-07 3.9E-12 80.9 10.0 69 183-254 68-143 (196)
237 3q3j_B RHO-related GTP-binding 98.6 5.8E-08 2E-12 84.2 8.1 113 101-254 27-145 (214)
238 1ihu_A Arsenical pump-driving 98.6 7.9E-08 2.7E-12 96.2 9.6 40 102-141 328-367 (589)
239 1jal_A YCHF protein; nucleotid 98.6 1.5E-07 5.2E-12 88.1 10.8 103 102-225 3-108 (363)
240 3fgn_A Dethiobiotin synthetase 98.6 2.3E-06 7.7E-11 76.2 17.5 167 100-273 25-220 (251)
241 1r5b_A Eukaryotic peptide chai 98.6 5.6E-08 1.9E-12 94.5 7.3 66 183-254 120-195 (467)
242 3of5_A Dethiobiotin synthetase 98.6 2E-06 6.9E-11 75.4 16.2 168 101-273 4-204 (228)
243 2f9l_A RAB11B, member RAS onco 98.6 4.3E-08 1.5E-12 83.8 4.8 148 102-311 6-166 (199)
244 1nij_A Hypothetical protein YJ 98.5 3E-06 1E-10 78.1 14.7 173 101-277 4-189 (318)
245 3h2y_A GTPase family protein; 98.5 3.9E-08 1.3E-12 92.7 1.8 122 102-255 161-288 (368)
246 2qag_B Septin-6, protein NEDD5 98.4 3.5E-07 1.2E-11 87.3 7.5 19 104-122 45-63 (427)
247 1oix_A RAS-related protein RAB 98.4 1.6E-07 5.4E-12 79.8 4.4 21 102-122 30-50 (191)
248 3ec1_A YQEH GTPase; atnos1, at 98.4 2.1E-08 7.1E-13 94.6 -1.5 121 102-255 163-289 (369)
249 2qag_A Septin-2, protein NEDD5 98.4 6.4E-07 2.2E-11 84.1 7.9 21 102-122 38-58 (361)
250 4fn5_A EF-G 1, elongation fact 98.3 1.7E-06 5.7E-11 88.4 11.0 129 100-254 12-151 (709)
251 2dby_A GTP-binding protein; GD 98.3 9.5E-07 3.3E-11 83.0 8.5 22 103-124 3-24 (368)
252 3qxc_A Dethiobiotin synthetase 98.3 3.6E-05 1.2E-09 67.9 17.8 148 100-254 20-203 (242)
253 1puj_A YLQF, conserved hypothe 98.3 7.4E-07 2.5E-11 80.8 7.0 32 100-137 119-150 (282)
254 1n0u_A EF-2, elongation factor 98.3 4.4E-07 1.5E-11 94.3 4.9 65 183-253 97-163 (842)
255 1tq4_A IIGP1, interferon-induc 98.3 1.2E-06 4E-11 83.6 7.0 22 101-122 69-90 (413)
256 2ohf_A Protein OLA1, GTP-bindi 98.3 1.1E-06 3.7E-11 83.1 6.5 104 102-225 23-128 (396)
257 3c5h_A Glucocorticoid receptor 98.2 5.2E-06 1.8E-10 73.9 10.6 81 213-310 162-252 (255)
258 2qnr_A Septin-2, protein NEDD5 98.2 8.1E-06 2.8E-10 74.6 11.7 22 101-122 18-39 (301)
259 2i3b_A HCR-ntpase, human cance 98.2 1.1E-06 3.8E-11 74.8 5.5 28 102-129 2-29 (189)
260 3sop_A Neuronal-specific septi 98.2 4.9E-06 1.7E-10 74.9 9.8 25 102-126 3-27 (270)
261 3a4m_A L-seryl-tRNA(SEC) kinas 98.2 4.9E-06 1.7E-10 74.4 9.5 42 100-141 3-44 (260)
262 2qag_C Septin-7; cell cycle, c 98.2 1.5E-05 5.3E-10 76.0 12.5 24 99-122 29-52 (418)
263 3ec2_A DNA replication protein 98.2 2E-06 7E-11 72.1 5.7 37 101-137 38-75 (180)
264 1xjc_A MOBB protein homolog; s 98.1 3E-06 1E-10 70.7 5.8 40 101-140 4-43 (169)
265 2cvh_A DNA repair and recombin 98.1 3.6E-05 1.2E-09 66.1 12.3 36 101-139 20-55 (220)
266 2w0m_A SSO2452; RECA, SSPF, un 98.1 4.8E-05 1.6E-09 65.8 12.9 38 102-139 24-61 (235)
267 1ni3_A YCHF GTPase, YCHF GTP-b 98.1 1E-06 3.5E-11 83.4 2.1 23 100-122 19-41 (392)
268 3hr8_A Protein RECA; alpha and 98.0 8.9E-05 3E-09 69.2 14.1 39 101-139 61-99 (356)
269 1f5n_A Interferon-induced guan 98.0 6.2E-06 2.1E-10 81.9 5.8 29 100-134 37-65 (592)
270 2b8t_A Thymidine kinase; deoxy 98.0 3E-05 1E-09 67.6 9.2 100 100-209 11-113 (223)
271 3szr_A Interferon-induced GTP- 97.9 2.3E-05 8E-10 78.5 9.4 74 183-256 146-230 (608)
272 2p5t_B PEZT; postsegregational 97.9 0.0002 6.8E-09 63.4 14.4 41 99-142 30-70 (253)
273 3cnl_A YLQF, putative uncharac 97.9 7.7E-06 2.6E-10 73.2 5.1 28 102-135 100-127 (262)
274 2dr3_A UPF0273 protein PH0284; 97.9 7.2E-05 2.5E-09 65.4 11.3 39 101-139 23-61 (247)
275 3c8u_A Fructokinase; YP_612366 97.9 2.6E-05 8.9E-10 67.0 8.1 42 100-141 21-62 (208)
276 1xp8_A RECA protein, recombina 97.9 0.00017 5.8E-09 67.6 14.0 89 101-195 74-164 (366)
277 3e1s_A Exodeoxyribonuclease V, 97.9 4.6E-05 1.6E-09 75.8 10.1 113 101-225 204-317 (574)
278 2kjq_A DNAA-related protein; s 97.9 4.1E-05 1.4E-09 62.4 8.1 36 102-137 37-72 (149)
279 1cr0_A DNA primase/helicase; R 97.9 0.00023 7.7E-09 64.5 13.9 39 101-139 35-74 (296)
280 1xx6_A Thymidine kinase; NESG, 97.9 0.0001 3.4E-09 62.7 10.5 95 100-209 7-105 (191)
281 1np6_A Molybdopterin-guanine d 97.8 1.9E-05 6.6E-10 66.1 5.7 39 101-139 6-44 (174)
282 2ehv_A Hypothetical protein PH 97.8 5.7E-05 1.9E-09 66.2 8.9 39 101-139 30-69 (251)
283 3bh0_A DNAB-like replicative h 97.8 0.00021 7.2E-09 65.5 12.9 117 101-224 68-190 (315)
284 3bgw_A DNAB-like replicative h 97.8 0.00023 8E-09 68.4 13.6 117 101-224 197-319 (444)
285 1u94_A RECA protein, recombina 97.8 5.2E-05 1.8E-09 70.8 8.8 89 101-196 63-154 (356)
286 2zr9_A Protein RECA, recombina 97.8 8.5E-05 2.9E-09 69.2 9.7 39 101-139 61-99 (349)
287 2yvu_A Probable adenylyl-sulfa 97.8 2.7E-05 9.2E-10 65.5 5.7 41 100-140 12-52 (186)
288 1rz3_A Hypothetical protein rb 97.8 7.3E-05 2.5E-09 63.8 8.2 42 100-141 21-62 (201)
289 4a1f_A DNAB helicase, replicat 97.7 0.00019 6.6E-09 66.4 10.9 39 101-139 46-84 (338)
290 1gvn_B Zeta; postsegregational 97.7 5.3E-05 1.8E-09 68.6 6.8 62 73-142 10-71 (287)
291 3jvv_A Twitching mobility prot 97.7 5.4E-05 1.8E-09 70.7 6.7 82 101-193 123-206 (356)
292 4a74_A DNA repair and recombin 97.7 8E-05 2.7E-09 64.4 7.3 26 101-126 25-50 (231)
293 1odf_A YGR205W, hypothetical 3 97.7 9.2E-05 3.1E-09 67.2 7.8 43 99-141 29-74 (290)
294 2axn_A 6-phosphofructo-2-kinas 97.6 0.00025 8.7E-09 69.6 11.1 43 100-142 34-76 (520)
295 1nks_A Adenylate kinase; therm 97.6 3.8E-05 1.3E-09 64.5 4.6 36 102-137 2-37 (194)
296 1n0w_A DNA repair protein RAD5 97.6 9.6E-05 3.3E-09 64.5 7.1 39 101-139 24-68 (243)
297 1kht_A Adenylate kinase; phosp 97.6 4.6E-05 1.6E-09 63.9 4.7 36 102-137 4-39 (192)
298 3tqc_A Pantothenate kinase; bi 97.6 6E-05 2.1E-09 69.3 5.8 43 99-141 90-134 (321)
299 3bos_A Putative DNA replicatio 97.6 0.00015 5.2E-09 62.8 8.0 37 102-138 53-89 (242)
300 1a7j_A Phosphoribulokinase; tr 97.6 3.7E-05 1.3E-09 69.8 4.0 42 100-141 4-45 (290)
301 4b3f_X DNA-binding protein smu 97.6 0.00019 6.3E-09 72.5 9.4 43 103-148 207-249 (646)
302 3r7w_B Gtpase2, GTP-binding pr 97.6 0.00041 1.4E-08 63.8 10.7 70 183-255 45-121 (331)
303 2r6a_A DNAB helicase, replicat 97.6 0.0097 3.3E-07 57.2 21.0 39 101-139 203-242 (454)
304 3uie_A Adenylyl-sulfate kinase 97.6 7.3E-05 2.5E-09 63.7 5.3 41 100-140 24-64 (200)
305 3q5d_A Atlastin-1; G protein, 97.6 0.00011 3.9E-09 70.4 7.2 26 100-125 66-91 (447)
306 2qt1_A Nicotinamide riboside k 97.6 8.2E-05 2.8E-09 63.6 5.6 37 98-140 18-56 (207)
307 3asz_A Uridine kinase; cytidin 97.5 7.8E-05 2.7E-09 63.9 5.3 38 100-140 5-42 (211)
308 4eaq_A DTMP kinase, thymidylat 97.5 0.0019 6.6E-08 56.2 14.1 34 100-134 25-58 (229)
309 3t15_A Ribulose bisphosphate c 97.5 0.0004 1.4E-08 63.0 9.7 35 100-137 35-69 (293)
310 1nlf_A Regulatory protein REPA 97.5 0.00093 3.2E-08 59.9 11.7 38 101-138 30-77 (279)
311 2qgz_A Helicase loader, putati 97.5 7.6E-05 2.6E-09 68.3 4.3 36 102-137 153-189 (308)
312 2ewv_A Twitching motility prot 97.5 0.00012 4.2E-09 68.7 5.8 38 100-137 135-173 (372)
313 1l8q_A Chromosomal replication 97.5 7.4E-05 2.5E-09 68.6 4.2 37 102-138 38-74 (324)
314 2z43_A DNA repair and recombin 97.5 0.00026 9E-09 65.1 7.9 39 101-139 107-151 (324)
315 3v9p_A DTMP kinase, thymidylat 97.4 0.00063 2.1E-08 59.4 9.7 36 100-135 24-63 (227)
316 1sq5_A Pantothenate kinase; P- 97.4 0.00013 4.3E-09 66.8 5.5 42 100-141 79-122 (308)
317 1v5w_A DMC1, meiotic recombina 97.4 0.00037 1.3E-08 64.7 8.7 39 101-139 122-166 (343)
318 1uj2_A Uridine-cytidine kinase 97.4 0.0001 3.5E-09 65.3 4.7 42 99-140 20-66 (252)
319 2f1r_A Molybdopterin-guanine d 97.4 7.1E-05 2.4E-09 62.5 3.4 38 102-139 3-40 (171)
320 3aez_A Pantothenate kinase; tr 97.4 0.00015 5.1E-09 66.5 5.8 42 99-140 88-131 (312)
321 4a0g_A Adenosylmethionine-8-am 97.4 0.0018 6E-08 67.1 14.5 36 101-136 34-75 (831)
322 2q6t_A DNAB replication FORK h 97.4 0.0021 7.2E-08 61.7 14.1 38 101-138 200-238 (444)
323 3lda_A DNA repair protein RAD5 97.4 0.00059 2E-08 64.7 9.8 38 101-138 178-221 (400)
324 2pez_A Bifunctional 3'-phospho 97.4 0.00015 5.2E-09 60.4 5.2 40 100-139 4-43 (179)
325 1m7g_A Adenylylsulfate kinase; 97.4 0.00011 3.7E-09 63.2 4.3 42 100-141 24-66 (211)
326 2qz4_A Paraplegin; AAA+, SPG7, 97.4 0.0031 1.1E-07 55.4 13.8 35 100-137 38-72 (262)
327 1nn5_A Similar to deoxythymidy 97.4 0.0002 6.8E-09 61.2 5.7 36 100-135 8-43 (215)
328 3zvl_A Bifunctional polynucleo 97.4 0.0011 3.6E-08 63.3 11.2 36 100-140 257-292 (416)
329 2obn_A Hypothetical protein; s 97.4 0.0035 1.2E-07 57.9 14.2 159 101-272 152-333 (349)
330 2vhj_A Ntpase P4, P4; non- hyd 97.3 0.00087 3E-08 61.4 9.8 33 102-137 124-156 (331)
331 3syl_A Protein CBBX; photosynt 97.3 0.0021 7.3E-08 58.0 12.6 30 101-130 67-96 (309)
332 4b4t_H 26S protease regulatory 97.3 0.0039 1.3E-07 59.7 14.7 69 100-191 242-310 (467)
333 4b4t_M 26S protease regulatory 97.3 0.00026 8.9E-09 67.7 6.5 35 100-137 214-248 (434)
334 4b4t_K 26S protease regulatory 97.3 0.00028 9.5E-09 67.4 6.7 35 100-137 205-239 (428)
335 2w58_A DNAI, primosome compone 97.3 0.0002 6.8E-09 60.8 5.0 36 102-137 55-90 (202)
336 3io5_A Recombination and repai 97.3 0.00052 1.8E-08 62.7 7.8 36 103-138 30-67 (333)
337 4b4t_L 26S protease subunit RP 97.3 0.00031 1.1E-08 67.2 6.7 35 100-137 214-248 (437)
338 2z0h_A DTMP kinase, thymidylat 97.3 0.00024 8.1E-09 59.9 5.3 34 103-136 2-35 (197)
339 2wwf_A Thymidilate kinase, put 97.3 0.00024 8.2E-09 60.6 5.3 37 100-136 9-45 (212)
340 1q57_A DNA primase/helicase; d 97.3 0.0024 8E-08 62.3 13.1 39 101-139 242-281 (503)
341 2orw_A Thymidine kinase; TMTK, 97.3 0.00024 8.3E-09 59.9 5.2 36 102-137 4-39 (184)
342 1ly1_A Polynucleotide kinase; 97.3 9.1E-05 3.1E-09 61.4 2.4 37 101-141 2-38 (181)
343 2chg_A Replication factor C sm 97.3 0.00076 2.6E-08 57.2 8.3 33 104-136 41-73 (226)
344 2plr_A DTMP kinase, probable t 97.3 0.00025 8.4E-09 60.4 5.1 31 101-132 4-34 (213)
345 1gtv_A TMK, thymidylate kinase 97.3 6.5E-05 2.2E-09 64.4 1.4 36 103-138 2-37 (214)
346 1kgd_A CASK, peripheral plasma 97.3 0.00017 5.9E-09 60.3 4.0 25 101-125 5-29 (180)
347 3upu_A ATP-dependent DNA helic 97.3 0.0016 5.4E-08 62.8 11.3 35 103-137 47-82 (459)
348 3umf_A Adenylate kinase; rossm 97.3 0.00023 7.9E-09 61.7 4.8 27 99-125 27-53 (217)
349 2zts_A Putative uncharacterize 97.3 0.0017 5.7E-08 56.6 10.4 39 101-139 30-69 (251)
350 3a00_A Guanylate kinase, GMP k 97.3 0.00015 5.1E-09 61.0 3.4 25 102-126 2-26 (186)
351 3exa_A TRNA delta(2)-isopenten 97.3 0.00052 1.8E-08 62.6 7.1 34 101-139 3-36 (322)
352 4b4t_I 26S protease regulatory 97.3 0.00053 1.8E-08 65.1 7.5 35 100-137 215-249 (437)
353 2jeo_A Uridine-cytidine kinase 97.2 0.00028 9.6E-09 62.1 5.3 41 100-140 24-69 (245)
354 3t61_A Gluconokinase; PSI-biol 97.2 0.00023 8E-09 60.5 4.5 37 100-141 17-53 (202)
355 1jjv_A Dephospho-COA kinase; P 97.2 0.00019 6.6E-09 61.1 3.9 32 102-139 3-34 (206)
356 2eyu_A Twitching motility prot 97.2 0.00036 1.2E-08 62.2 5.8 37 101-137 25-62 (261)
357 2pbr_A DTMP kinase, thymidylat 97.2 0.00034 1.2E-08 58.6 5.3 31 103-133 2-32 (195)
358 1knq_A Gluconate kinase; ALFA/ 97.2 0.00041 1.4E-08 57.4 5.6 37 100-141 7-43 (175)
359 4eun_A Thermoresistant glucoki 97.2 0.00032 1.1E-08 59.6 5.1 37 100-141 28-64 (200)
360 1g5t_A COB(I)alamin adenosyltr 97.2 0.0018 6.1E-08 54.9 9.6 37 103-139 30-66 (196)
361 4b4t_J 26S protease regulatory 97.2 0.00078 2.7E-08 63.6 8.0 68 101-191 182-249 (405)
362 1lvg_A Guanylate kinase, GMP k 97.2 0.00019 6.5E-09 61.2 3.4 25 102-126 5-29 (198)
363 1zp6_A Hypothetical protein AT 97.2 0.00026 8.8E-09 59.4 4.1 23 100-122 8-30 (191)
364 2j9r_A Thymidine kinase; TK1, 97.2 0.00058 2E-08 58.8 6.2 38 100-137 27-64 (214)
365 2rhm_A Putative kinase; P-loop 97.1 0.00031 1.1E-08 58.9 4.4 37 100-141 4-40 (193)
366 3kb2_A SPBC2 prophage-derived 97.1 0.00027 9.3E-09 58.0 3.8 35 102-141 2-36 (173)
367 3tr0_A Guanylate kinase, GMP k 97.1 0.0003 1E-08 59.7 4.1 25 101-125 7-31 (205)
368 3tau_A Guanylate kinase, GMP k 97.1 0.00027 9.4E-09 60.6 3.7 26 100-125 7-32 (208)
369 1y63_A LMAJ004144AAA protein; 97.1 0.00022 7.6E-09 59.8 3.0 35 100-138 9-43 (184)
370 2qby_B CDC6 homolog 3, cell di 97.1 0.002 6.9E-08 59.9 9.9 37 101-137 45-89 (384)
371 2qby_A CDC6 homolog 1, cell di 97.1 0.0016 5.4E-08 60.4 9.2 37 101-137 45-84 (386)
372 1qhx_A CPT, protein (chloramph 97.1 0.00026 8.7E-09 58.7 3.3 35 102-139 4-38 (178)
373 1uf9_A TT1252 protein; P-loop, 97.1 0.00026 9E-09 59.9 3.4 35 99-139 6-40 (203)
374 3lv8_A DTMP kinase, thymidylat 97.1 0.00096 3.3E-08 58.5 7.1 40 100-139 26-65 (236)
375 1kag_A SKI, shikimate kinase I 97.1 0.00024 8.3E-09 58.6 3.0 32 102-138 5-36 (173)
376 1ye8_A Protein THEP1, hypothet 97.1 0.00033 1.1E-08 58.7 3.8 24 103-126 2-25 (178)
377 2if2_A Dephospho-COA kinase; a 97.1 0.00025 8.4E-09 60.3 3.1 32 102-139 2-33 (204)
378 1xwi_A SKD1 protein; VPS4B, AA 97.1 0.0013 4.3E-08 60.5 8.1 26 100-125 44-69 (322)
379 3ld9_A DTMP kinase, thymidylat 97.1 0.00096 3.3E-08 58.0 6.8 42 99-140 19-61 (223)
380 3foz_A TRNA delta(2)-isopenten 97.1 0.0011 3.8E-08 60.3 7.5 35 100-139 9-43 (316)
381 2v54_A DTMP kinase, thymidylat 97.1 0.00028 9.7E-09 59.8 3.4 34 101-136 4-37 (204)
382 2qor_A Guanylate kinase; phosp 97.1 0.00024 8.2E-09 60.6 2.9 26 100-125 11-36 (204)
383 3h4m_A Proteasome-activating n 97.1 0.0012 4.2E-08 58.9 7.8 34 101-137 51-84 (285)
384 3vaa_A Shikimate kinase, SK; s 97.1 0.00038 1.3E-08 59.1 4.1 35 100-139 24-58 (199)
385 1pzn_A RAD51, DNA repair and r 97.1 0.0011 3.7E-08 61.7 7.5 38 100-137 130-173 (349)
386 3ney_A 55 kDa erythrocyte memb 97.1 0.00037 1.3E-08 59.4 3.9 26 100-125 18-43 (197)
387 4edh_A DTMP kinase, thymidylat 97.1 0.00064 2.2E-08 58.7 5.5 36 101-136 6-41 (213)
388 1tev_A UMP-CMP kinase; ploop, 97.1 0.00041 1.4E-08 58.1 4.2 33 101-138 3-35 (196)
389 1lv7_A FTSH; alpha/beta domain 97.0 0.0027 9.2E-08 55.9 9.7 24 102-125 46-69 (257)
390 3llm_A ATP-dependent RNA helic 97.0 0.0051 1.7E-07 53.5 11.3 126 102-229 77-222 (235)
391 2i1q_A DNA repair and recombin 97.0 0.00067 2.3E-08 62.2 5.7 38 101-138 98-151 (322)
392 2bbw_A Adenylate kinase 4, AK4 97.0 0.00042 1.4E-08 60.9 4.1 25 101-125 27-51 (246)
393 2c95_A Adenylate kinase 1; tra 97.0 0.00044 1.5E-08 58.1 4.1 33 101-138 9-41 (196)
394 3d3q_A TRNA delta(2)-isopenten 97.0 0.0005 1.7E-08 63.5 4.7 34 102-140 8-41 (340)
395 1fnn_A CDC6P, cell division co 97.0 0.0045 1.6E-07 57.5 11.4 39 102-140 45-84 (389)
396 1tf7_A KAIC; homohexamer, hexa 97.0 0.0025 8.5E-08 62.5 10.0 37 101-137 281-317 (525)
397 3trf_A Shikimate kinase, SK; a 97.0 0.00045 1.5E-08 57.6 4.0 34 101-139 5-38 (185)
398 1znw_A Guanylate kinase, GMP k 97.0 0.00037 1.3E-08 59.7 3.5 26 100-125 19-44 (207)
399 1w36_D RECD, exodeoxyribonucle 97.0 0.002 6.8E-08 64.4 9.2 36 102-137 165-204 (608)
400 3vkw_A Replicase large subunit 97.0 0.0064 2.2E-07 58.1 12.2 109 100-225 160-271 (446)
401 1vht_A Dephospho-COA kinase; s 97.0 0.00043 1.5E-08 59.6 3.8 33 101-139 4-36 (218)
402 3cm0_A Adenylate kinase; ATP-b 97.0 0.00044 1.5E-08 57.7 3.8 33 101-138 4-36 (186)
403 1jbk_A CLPB protein; beta barr 97.0 0.00068 2.3E-08 56.1 4.9 26 102-127 44-69 (195)
404 3d8b_A Fidgetin-like protein 1 97.0 0.0037 1.3E-07 58.1 10.5 35 100-137 116-150 (357)
405 3b9p_A CG5977-PA, isoform A; A 97.0 0.002 6.8E-08 58.0 8.4 25 101-125 54-78 (297)
406 2ze6_A Isopentenyl transferase 97.0 0.00066 2.3E-08 60.1 4.9 34 102-140 2-35 (253)
407 3te6_A Regulatory protein SIR3 97.0 0.0093 3.2E-07 54.5 12.7 28 100-127 44-71 (318)
408 2cdn_A Adenylate kinase; phosp 97.0 0.00059 2E-08 57.9 4.4 35 99-138 18-52 (201)
409 1ukz_A Uridylate kinase; trans 97.0 0.00061 2.1E-08 57.8 4.4 36 98-138 12-47 (203)
410 2j41_A Guanylate kinase; GMP, 96.9 0.00049 1.7E-08 58.3 3.8 25 101-125 6-30 (207)
411 4tmk_A Protein (thymidylate ki 96.9 0.0016 5.6E-08 56.1 7.0 38 101-139 3-41 (213)
412 3a8t_A Adenylate isopentenyltr 96.9 0.0007 2.4E-08 62.4 4.9 36 100-140 39-74 (339)
413 1z6g_A Guanylate kinase; struc 96.9 0.00041 1.4E-08 60.0 3.2 26 100-125 22-47 (218)
414 3crm_A TRNA delta(2)-isopenten 96.9 0.0012 4.1E-08 60.6 6.4 35 101-140 5-39 (323)
415 1cke_A CK, MSSA, protein (cyti 96.9 0.00055 1.9E-08 59.0 3.9 32 102-138 6-37 (227)
416 3lw7_A Adenylate kinase relate 96.9 0.00057 1.9E-08 56.0 3.8 20 102-121 2-21 (179)
417 3eie_A Vacuolar protein sortin 96.9 0.0024 8.1E-08 58.5 8.4 34 101-137 51-84 (322)
418 1qf9_A UMP/CMP kinase, protein 96.9 0.00079 2.7E-08 56.2 4.7 34 100-138 5-38 (194)
419 2v1u_A Cell division control p 96.9 0.005 1.7E-07 57.1 10.6 38 101-138 44-87 (387)
420 1aky_A Adenylate kinase; ATP:A 96.9 0.00065 2.2E-08 58.5 4.1 34 100-138 3-36 (220)
421 4hlc_A DTMP kinase, thymidylat 96.9 0.0062 2.1E-07 52.0 10.2 34 102-136 3-36 (205)
422 2bwj_A Adenylate kinase 5; pho 96.9 0.00061 2.1E-08 57.4 3.8 34 101-139 12-45 (199)
423 1p9r_A General secretion pathw 96.9 0.00085 2.9E-08 63.9 5.2 37 101-137 167-203 (418)
424 1zak_A Adenylate kinase; ATP:A 96.9 0.0006 2E-08 58.8 3.7 26 100-125 4-29 (222)
425 2f6r_A COA synthase, bifunctio 96.9 0.00047 1.6E-08 62.1 3.1 36 98-139 72-107 (281)
426 3eph_A TRNA isopentenyltransfe 96.9 0.0017 5.8E-08 61.2 6.9 34 101-139 2-35 (409)
427 1sxj_C Activator 1 40 kDa subu 96.8 0.0021 7.1E-08 59.3 7.4 33 104-136 49-81 (340)
428 1htw_A HI0065; nucleotide-bind 96.8 0.00074 2.5E-08 55.4 3.8 26 100-125 32-57 (158)
429 1sxj_E Activator 1 40 kDa subu 96.8 0.0055 1.9E-07 56.4 10.2 23 104-126 39-61 (354)
430 2z4s_A Chromosomal replication 96.8 0.0016 5.3E-08 62.6 6.6 36 102-137 131-168 (440)
431 3iij_A Coilin-interacting nucl 96.8 0.00071 2.4E-08 56.2 3.7 25 101-125 11-35 (180)
432 1s96_A Guanylate kinase, GMP k 96.8 0.00066 2.3E-08 58.9 3.6 26 101-126 16-41 (219)
433 3cmu_A Protein RECA, recombina 96.8 0.0029 9.8E-08 70.6 9.3 90 100-196 1426-1519(2050)
434 3tlx_A Adenylate kinase 2; str 96.8 0.00089 3E-08 58.9 4.4 26 100-125 28-53 (243)
435 2grj_A Dephospho-COA kinase; T 96.8 0.00051 1.7E-08 58.3 2.7 36 100-140 11-46 (192)
436 4gp7_A Metallophosphoesterase; 96.8 0.0007 2.4E-08 56.1 3.5 23 100-122 8-30 (171)
437 2jaq_A Deoxyguanosine kinase; 96.8 0.00076 2.6E-08 56.9 3.8 23 103-125 2-24 (205)
438 3e2i_A Thymidine kinase; Zn-bi 96.8 0.0049 1.7E-07 53.0 8.7 111 100-224 27-139 (219)
439 2bdt_A BH3686; alpha-beta prot 96.8 0.00073 2.5E-08 56.7 3.6 22 102-123 3-24 (189)
440 3lnc_A Guanylate kinase, GMP k 96.8 0.00043 1.5E-08 60.2 2.1 26 100-125 26-52 (231)
441 2vli_A Antibiotic resistance p 96.8 0.00048 1.6E-08 57.2 2.3 26 100-125 4-29 (183)
442 2p65_A Hypothetical protein PF 96.8 0.00087 3E-08 55.3 3.8 26 102-127 44-69 (187)
443 2iyv_A Shikimate kinase, SK; t 96.8 0.00075 2.6E-08 56.3 3.4 33 102-139 3-35 (184)
444 4fcw_A Chaperone protein CLPB; 96.8 0.00087 3E-08 60.7 4.0 39 102-140 48-86 (311)
445 3sr0_A Adenylate kinase; phosp 96.8 0.0009 3.1E-08 57.4 3.9 23 103-125 2-24 (206)
446 1via_A Shikimate kinase; struc 96.8 0.00078 2.7E-08 55.8 3.4 32 103-139 6-37 (175)
447 1zd8_A GTP:AMP phosphotransfer 96.7 0.0007 2.4E-08 58.7 3.2 34 100-138 6-39 (227)
448 2orv_A Thymidine kinase; TP4A 96.7 0.0098 3.4E-07 51.7 10.3 38 100-137 18-55 (234)
449 1e6c_A Shikimate kinase; phosp 96.7 0.00086 2.9E-08 55.1 3.6 33 102-139 3-35 (173)
450 2qmh_A HPR kinase/phosphorylas 96.7 0.0015 5.2E-08 55.5 5.0 33 101-139 34-66 (205)
451 3tif_A Uncharacterized ABC tra 96.7 0.00078 2.7E-08 59.0 3.3 24 100-123 30-53 (235)
452 2v9p_A Replication protein E1; 96.7 0.0011 3.9E-08 60.3 4.4 29 100-130 125-153 (305)
453 3pxi_A Negative regulator of g 96.7 0.0037 1.3E-07 64.2 8.6 36 102-137 522-557 (758)
454 1x6v_B Bifunctional 3'-phospho 96.7 0.0011 3.8E-08 66.1 4.6 41 100-140 51-91 (630)
455 3fb4_A Adenylate kinase; psych 96.7 0.0011 3.6E-08 56.9 3.9 23 103-125 2-24 (216)
456 2pcj_A ABC transporter, lipopr 96.7 0.00085 2.9E-08 58.3 3.1 23 100-122 29-51 (224)
457 2qp9_X Vacuolar protein sortin 96.7 0.0028 9.7E-08 58.9 6.8 33 102-137 85-117 (355)
458 4e22_A Cytidylate kinase; P-lo 96.6 0.0011 3.7E-08 58.7 3.7 25 101-125 27-51 (252)
459 3be4_A Adenylate kinase; malar 96.6 0.00098 3.4E-08 57.4 3.3 33 101-138 5-37 (217)
460 3cf2_A TER ATPase, transitiona 96.6 0.0028 9.6E-08 65.0 7.2 70 99-191 236-305 (806)
461 1d2n_A N-ethylmaleimide-sensit 96.6 0.0031 1.1E-07 56.0 6.8 34 100-136 63-96 (272)
462 3cmw_A Protein RECA, recombina 96.6 0.0064 2.2E-07 67.0 10.3 86 100-191 382-469 (1706)
463 1b0u_A Histidine permease; ABC 96.6 0.001 3.5E-08 59.3 3.3 24 100-123 31-54 (262)
464 1zuh_A Shikimate kinase; alpha 96.6 0.0014 4.7E-08 53.8 3.8 34 101-139 7-40 (168)
465 2pt5_A Shikimate kinase, SK; a 96.6 0.0014 4.9E-08 53.5 3.8 32 103-139 2-33 (168)
466 1ak2_A Adenylate kinase isoenz 96.6 0.0016 5.4E-08 56.7 4.3 34 100-138 15-48 (233)
467 2cbz_A Multidrug resistance-as 96.6 0.0011 3.8E-08 58.1 3.3 26 100-125 30-55 (237)
468 3cmu_A Protein RECA, recombina 96.6 0.0068 2.3E-07 67.7 10.0 40 100-139 382-421 (2050)
469 1mv5_A LMRA, multidrug resista 96.6 0.0013 4.3E-08 58.0 3.5 26 100-125 27-52 (243)
470 1ex7_A Guanylate kinase; subst 96.6 0.0013 4.3E-08 55.6 3.4 22 103-124 3-24 (186)
471 3gfo_A Cobalt import ATP-bindi 96.6 0.0011 3.7E-08 59.6 3.1 24 100-123 33-56 (275)
472 1m8p_A Sulfate adenylyltransfe 96.6 0.0021 7E-08 63.8 5.4 41 100-140 395-436 (573)
473 2onk_A Molybdate/tungstate ABC 96.6 0.0013 4.6E-08 57.7 3.6 22 102-123 25-46 (240)
474 3dl0_A Adenylate kinase; phosp 96.5 0.0012 4E-08 56.6 3.2 31 103-138 2-32 (216)
475 2olj_A Amino acid ABC transpor 96.5 0.0012 4.1E-08 58.9 3.3 24 100-123 49-72 (263)
476 3r20_A Cytidylate kinase; stru 96.5 0.0016 5.4E-08 57.0 4.0 34 101-139 9-42 (233)
477 2gks_A Bifunctional SAT/APS ki 96.5 0.002 6.8E-08 63.5 5.1 41 100-140 371-411 (546)
478 1g6h_A High-affinity branched- 96.5 0.0012 4.1E-08 58.6 3.2 25 100-124 32-56 (257)
479 4g1u_C Hemin import ATP-bindin 96.5 0.0012 4.1E-08 59.0 3.1 25 100-124 36-60 (266)
480 2d2e_A SUFC protein; ABC-ATPas 96.5 0.0015 5.2E-08 57.7 3.7 23 100-122 28-50 (250)
481 1ji0_A ABC transporter; ATP bi 96.5 0.0013 4.3E-08 57.8 3.2 25 100-124 31-55 (240)
482 2rcn_A Probable GTPase ENGC; Y 96.5 0.0015 5.1E-08 60.9 3.8 21 102-122 216-236 (358)
483 1sgw_A Putative ABC transporte 96.5 0.0011 3.8E-08 57.2 2.7 24 101-124 35-58 (214)
484 2pze_A Cystic fibrosis transme 96.5 0.0013 4.4E-08 57.4 3.2 26 100-125 33-58 (229)
485 2zu0_C Probable ATP-dependent 96.5 0.0016 5.4E-08 58.2 3.8 23 100-122 45-67 (267)
486 1vpl_A ABC transporter, ATP-bi 96.5 0.0014 4.7E-08 58.3 3.3 24 100-123 40-63 (256)
487 2ff7_A Alpha-hemolysin translo 96.5 0.0013 4.5E-08 58.0 3.2 24 100-123 34-57 (247)
488 3n70_A Transport activator; si 96.5 0.0013 4.5E-08 52.8 2.9 33 104-137 27-59 (145)
489 2ce7_A Cell division protein F 96.5 0.01 3.5E-07 57.3 9.6 24 102-125 50-73 (476)
490 3u61_B DNA polymerase accessor 96.5 0.021 7.1E-07 51.9 11.3 34 101-137 48-81 (324)
491 2ghi_A Transport protein; mult 96.5 0.0015 5.1E-08 58.1 3.3 24 100-123 45-68 (260)
492 2qi9_C Vitamin B12 import ATP- 96.4 0.0015 5.1E-08 57.8 3.2 24 100-123 25-48 (249)
493 2ixe_A Antigen peptide transpo 96.4 0.0016 5.4E-08 58.4 3.3 25 100-124 44-68 (271)
494 1iqp_A RFCS; clamp loader, ext 96.4 0.0049 1.7E-07 55.8 6.8 27 103-129 48-74 (327)
495 2xb4_A Adenylate kinase; ATP-b 96.4 0.0019 6.6E-08 55.8 3.8 23 103-125 2-24 (223)
496 1e4v_A Adenylate kinase; trans 96.4 0.002 6.8E-08 55.2 3.8 23 103-125 2-24 (214)
497 1tue_A Replication protein E1; 96.4 0.0016 5.6E-08 55.6 3.1 24 102-125 59-82 (212)
498 3pxg_A Negative regulator of g 96.4 0.0036 1.2E-07 60.5 6.0 26 102-127 202-227 (468)
499 2gk6_A Regulator of nonsense t 96.4 0.005 1.7E-07 61.7 7.1 45 103-150 197-242 (624)
500 2yz2_A Putative ABC transporte 96.4 0.0017 5.9E-08 57.9 3.3 25 100-124 32-56 (266)
No 1
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=100.00 E-value=2.2e-52 Score=400.94 Aligned_cols=339 Identities=44% Similarity=0.749 Sum_probs=313.7
Q ss_pred CchHhHHHHHHHHHHHhhcccccChhhhHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcccccccCCChHHHHHHHHH
Q 019214 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIF 80 (344)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (344)
|.|+.|++++++.++++++++.++|+.+++.+++|+..|+++|++.+++.++.+++.+....+.+..+.++.+.+.+.+.
T Consensus 1 m~~~~l~~~l~~~~~~l~~~~~l~e~~~~~~l~ei~~~Ll~adv~~~~~~~~~~~v~~~~~~~~v~~~~~~~~~v~~~l~ 80 (443)
T 3dm5_A 1 MVLDNLGKALANTLKKIARASSVDEALIKELVRDIQRALIQADVNVRLVLQLTREIQRRALEEKPPAGISKKEHIIKIVY 80 (443)
T ss_dssp CCSTHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCTTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhccccccCCcHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999998888888888899999999999
Q ss_pred HHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCccee
Q 019214 81 NELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFY 160 (344)
Q Consensus 81 ~~l~~~l~~~~~~~~~~~~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~ 160 (344)
+++.+++....... ...+++.+|+++|++||||||++++||.++.++|++|+++++|+||+++++++..|+...++|++
T Consensus 81 ~eL~~~L~~~~~~~-~~~~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~ 159 (443)
T 3dm5_A 81 EELTKFLGTEAKPI-EIKEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVF 159 (443)
T ss_dssp HHHHHHTTSSCCCC-CCCSSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEE
T ss_pred HHHHHHhcCccccc-ccCCCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEE
Confidence 99999998633222 22346789999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHHHHHHHhccC
Q 019214 161 GSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV 240 (344)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~~~~~~~~~~ 240 (344)
......++..++.+++..+..++||++||||||+.+.+..++.+++.+.....+|.+++|+|++.+.+....+..|.+..
T Consensus 160 ~~~~~~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~~~~ 239 (443)
T 3dm5_A 160 GNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFKEAT 239 (443)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHSC
T ss_pred ecCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHHhhC
Confidence 87788899999999999998889999999999999888888888988888888999999999999988888889998888
Q ss_pred CcCEEEeecCCCCCChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCCCc--hHH
Q 019214 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQ--QPE 318 (344)
Q Consensus 241 ~~~~lVinK~D~~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~~~--~~~ 318 (344)
++.++|+||+|.+.++|..++....++.|+.|+++|++++++.+|+|..++++++|+||+..|+|++++..+.+. . +
T Consensus 240 ~i~gVIlTKlD~~~~gG~~ls~~~~~g~PI~fig~Ge~vddL~~f~~~~~~~~llg~gd~~~l~e~~~~~~~~~~~~~-~ 318 (443)
T 3dm5_A 240 PIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDPPRFVSRLLGLGDIQGLLEKFKELEKEVEIKE-E 318 (443)
T ss_dssp TTEEEEEECCSSCSSHHHHHHHHHTTCCCEEEEECSSSTTCEEECCHHHHHHHHTTTTCHHHHHHHHHHHHTTHHHHH-H
T ss_pred CCeEEEEECCCCcccccHHHHHHHHHCCCEEEEEcCCChHHhhhCCHHHHHHHHcCCCcHHHHHHHHHHhhhhhHHHH-H
Confidence 888999999999999999999999999999999999999999999999999999999999999999999988765 4 4
Q ss_pred HHHHHhcCCcChHHHHHhHHhhcc
Q 019214 319 LLQKLSEGNFTLRIMFSLCFQDSV 342 (344)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ 342 (344)
+.+++.+|+|||+||++| ++++.
T Consensus 319 ~~~k~~~~~f~l~d~~~q-~~~~~ 341 (443)
T 3dm5_A 319 DIERFLRGKFTLKDMYAQ-LEAMR 341 (443)
T ss_dssp HHHHHHTTCCCHHHHHHH-HHHHH
T ss_pred HHHHHhhCCcCHHHHHHH-HHHHH
Confidence 899999999999999999 98863
No 2
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=100.00 E-value=7.7e-49 Score=376.52 Aligned_cols=333 Identities=40% Similarity=0.664 Sum_probs=289.0
Q ss_pred HHHHHHHHhhcccccChhhhHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcccccccCCChHHHHHHHHHHHHHhhcC
Q 019214 9 SISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLD 88 (344)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 88 (344)
++++.++++++++.++|+.+++.+++|+..|+++|++.+++.++.+++......+.+..+.++.+.+.+.+.+++.+++.
T Consensus 5 ~l~~~~~~l~~~~~l~e~~~~~~l~el~~~Ll~aDv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~v~~eL~~~L~ 84 (433)
T 3kl4_A 5 NIRDAVRKFLTGSTPYEKAVDEFIKDLQKSLISSDVNVKLVFSLTAKIKERLNKEKPPSVLERKEWFISIVYDELSKLFG 84 (433)
T ss_dssp THHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHHHHHhcC
Confidence 45555689999999999999999999999999999999999999999999988888888889999999999999999998
Q ss_pred CCCCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCH
Q 019214 89 PGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDP 168 (344)
Q Consensus 89 ~~~~~~~~~~~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~ 168 (344)
...........++.+|+++|++||||||++++||.++...|++|+++++|+||+++++++..++...+++++......++
T Consensus 85 ~~~~~~~~~~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp 164 (433)
T 3kl4_A 85 GDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNP 164 (433)
T ss_dssp SSSCCCCSCCSSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCH
T ss_pred ccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCH
Confidence 65333333344678999999999999999999999999999999999999999999999999999999999887778889
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCCc--chHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHHHHHHHhccCCcCEEE
Q 019214 169 VRIAVEGVETFKKENCDLIIVDTSGRHK--QEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVI 246 (344)
Q Consensus 169 ~~~~~~~l~~~~~~~~d~vlIDT~G~~~--~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~~~~~~~~~~~~~~lV 246 (344)
..++..++..+...++|++||||||+.+ .+..++.++..+.+...++.+++|+|++.+.+....+..|.+...+.++|
T Consensus 165 ~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~~~~~gVI 244 (433)
T 3kl4_A 165 IEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQASPIGSVI 244 (433)
T ss_dssp HHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHHCSSEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcccCCcEEE
Confidence 9998889998887899999999999987 77788888888888888999999999999888888889998888889999
Q ss_pred eecCCCCCChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCCCchHHHHHHHhcC
Q 019214 247 VTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELLQKLSEG 326 (344)
Q Consensus 247 inK~D~~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~~~~~~~~~~~~~~ 326 (344)
+||+|.+.++|..++....++.|+.|+++|++++++.+|.|..+++.++|+||+..|++++++.++.+..+++.+++.+|
T Consensus 245 lTKlD~~a~~G~als~~~~~g~Pi~fig~Ge~v~dL~~f~p~~~~~~llg~gd~~~l~e~~~~~~~~~~~~~~~~k~~~g 324 (433)
T 3kl4_A 245 ITKMDGTAKGGGALSAVVATGATIKFIGTGEKIDELETFNAKRFVSRILGMGDIESILEKVKGLEEYDKIQKKMEDVMEG 324 (433)
T ss_dssp EECGGGCSCHHHHHHHHHHHTCEEEEEECCSSSSCEEECCHHHHHHHHHCSSHHHHHHHHHHHC----------------
T ss_pred EecccccccchHHHHHHHHHCCCEEEEECCCChHhCccCCHHHHHHHhcCCchHHHHHHHHHHhhhHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988888999999999
Q ss_pred --CcChHHHHHhHHhhcc
Q 019214 327 --NFTLRIMFSLCFQDSV 342 (344)
Q Consensus 327 --~~~~~~~~~~~~~~~~ 342 (344)
+||++||++| ++++.
T Consensus 325 ~~~f~~~d~~~q-~~~~~ 341 (433)
T 3kl4_A 325 KGKLTLRDVYAQ-IIALR 341 (433)
T ss_dssp ---CCHHHHHHH-HHHHH
T ss_pred CCCCCHHHHHHH-HHHHH
Confidence 9999999999 98863
No 3
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=100.00 E-value=5.8e-45 Score=351.41 Aligned_cols=339 Identities=30% Similarity=0.494 Sum_probs=301.9
Q ss_pred hHhHHHHHHHHHHHhhcccccChhhhHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcccccccCCChHHHHHHHHHHH
Q 019214 3 LAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNE 82 (344)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 82 (344)
|+.|+++|++.++++++++.++|+.+++.+++++..|+++|++.+++.++++++.+....+.+..+.++.+.+.+++.++
T Consensus 2 ~~~l~~~l~~~~~~~~~~~~~~e~~~~~~l~e~~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (433)
T 2xxa_A 2 FDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNE 81 (433)
T ss_dssp --CHHHHHHHHHHHSCCCSCCCHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHSSSCCCSSSCTTTTTHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999888888877888888888999999
Q ss_pred HHhhcCCCCCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCccEEeecCcCcchhHHHHHhhcccCCcceec
Q 019214 83 LCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKK-GWKPALVCADTFRAGAFDQLKQNATKAKIPFYG 161 (344)
Q Consensus 83 l~~~l~~~~~~~~~~~~~~~ii~ivG~~GvGKTTl~~~La~~l~~~-g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~ 161 (344)
+.+++.....+......++++|+++|++||||||++.+||.+++.+ |++|++|++|+||+++.+++..++...+++++.
T Consensus 82 l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~ 161 (433)
T 2xxa_A 82 LVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFP 161 (433)
T ss_dssp HHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECC
T ss_pred HHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEe
Confidence 9999986554444444567899999999999999999999999998 999999999999999999998888888998877
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHHHHHHHhccCC
Q 019214 162 SYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVS 241 (344)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~~~~~~~~~~~ 241 (344)
.....++..++.+.+..+...+||++||||||..+.+...+.++..+.....++.+++|+|+..+.+....+..|....+
T Consensus 162 ~~~~~dp~~i~~~~l~~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~~~~f~~~l~ 241 (433)
T 2xxa_A 162 SDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEALP 241 (433)
T ss_dssp CCSSSCHHHHHHHHHHHHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHHHHHHHhccCC
Confidence 66667888887888888776789999999999987766777777777767789999999999988877777888877777
Q ss_pred cCEEEeecCCCCCChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCCCchHHHHH
Q 019214 242 VGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELLQ 321 (344)
Q Consensus 242 ~~~lVinK~D~~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~~~~~~~~~ 321 (344)
+.++|+||+|...+.+..++....++.|+.|++.|+.+.++.++++..+++++.|.||+..|++.+.+.++.+...++.+
T Consensus 242 i~gvVlnK~D~~~~~g~~l~i~~~~~~Pi~~iG~ge~v~dl~~f~p~~~a~~l~g~gD~~~Lie~a~~~~~~~~~~~l~~ 321 (433)
T 2xxa_A 242 LTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLAS 321 (433)
T ss_dssp CCCEEEECTTSSSCCTHHHHHHHHHCCCEEEEECSSSSSCEEECCHHHHHHHHHCCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEecCCCCccHHHHHHHHHHHCCCeEEEecCCCchhhhhcChHHHHHHHhCccchHHHHHHHHHhhhhhhhHHHHH
Confidence 78999999999888888889889999999999999999999999999999999999999999999998876666788999
Q ss_pred HHhcC-CcChHHHHHhHHhhcc
Q 019214 322 KLSEG-NFTLRIMFSLCFQDSV 342 (344)
Q Consensus 322 ~~~~~-~~~~~~~~~~~~~~~~ 342 (344)
++..+ +|+++|+++| ++++.
T Consensus 322 k~~~~~~f~~~d~~~q-l~~~~ 342 (433)
T 2xxa_A 322 KLKKGDGFDLNDFLEQ-LRQMK 342 (433)
T ss_dssp HHHSTTSCCHHHHHHH-HHHHH
T ss_pred HHhcCCCCCHHHHHHH-HHHHH
Confidence 99999 8999999999 98854
No 4
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=100.00 E-value=4.5e-46 Score=363.97 Aligned_cols=340 Identities=64% Similarity=1.038 Sum_probs=292.8
Q ss_pred CchHhHHHHHHHHHHHhhcccccChhhhHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcccccccCCChHHHHHHHHH
Q 019214 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIF 80 (344)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (344)
|.|+.|+++|++.++++++++.++|+.+++.+++++..|+++|++.+++.++.+++.+....+.+..+.++.+.+...+.
T Consensus 1 m~~~~l~~~l~~~~~~l~~~~~~~e~~~~~~l~el~~~Ll~adv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~ 80 (504)
T 2j37_W 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVF 80 (504)
T ss_dssp -------CTTTTTTTCCCSCSSCCHHHHHHHHHHHHHHHCCTTTSSSTTHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCcccccCChHHHHHHHHH
Confidence 67999999999999999999999999999999999999999999999999999999887777777778899999999999
Q ss_pred HHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCccee
Q 019214 81 NELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFY 160 (344)
Q Consensus 81 ~~l~~~l~~~~~~~~~~~~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~ 160 (344)
+++.+++.....++.+...++++|+|+|++||||||++++|+.++...|++|++|++|+||+++.+++..++++.+++++
T Consensus 81 ~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~ 160 (504)
T 2j37_W 81 KELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFY 160 (504)
T ss_dssp HHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEE
Confidence 99999998765554444456789999999999999999999999999999999999999999999999999999999988
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHHHHHHHhccC
Q 019214 161 GSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV 240 (344)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~~~~~~~~~~ 240 (344)
......++..++.+++.++...++|++||||||....+..+..++..+.....+|.+++|+|++.+.+....+..|.+..
T Consensus 161 ~~~~~~dp~~i~~~al~~~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~a~~~~~~~ 240 (504)
T 2j37_W 161 GSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKV 240 (504)
T ss_dssp ECCCCSCHHHHHHHHHHHHHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHHHHHHHhhc
Confidence 87777889888888888887679999999999998766666666665555558999999999998876667777776655
Q ss_pred CcCEEEeecCCCCCChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCCCchHHHH
Q 019214 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELL 320 (344)
Q Consensus 241 ~~~~lVinK~D~~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~~~~~~~~ 320 (344)
++.++|+||+|...+.+..++....++.|+.|++.|+.+.++.++.+..++|+++|.||++.|++++.+. +.+...++.
T Consensus 241 ~i~gvVlNK~D~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~-~~~~~~~l~ 319 (504)
T 2j37_W 241 DVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL-KLDDNEALI 319 (504)
T ss_dssp CCCCEEEECTTSCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT-TTCCCTTTT
T ss_pred CceEEEEeCCccccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH-HHHHHHHHH
Confidence 5579999999999888888888889999999999999999999999999999999999999999999988 455556788
Q ss_pred HHHhcCCcChHHHHHhHHhhcc
Q 019214 321 QKLSEGNFTLRIMFSLCFQDSV 342 (344)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~ 342 (344)
+++.+++|+++|+++| ++++.
T Consensus 320 ~k~~~g~~~l~d~~~~-l~~~~ 340 (504)
T 2j37_W 320 EKLKHGQFTLRDMYEQ-FQNIM 340 (504)
T ss_dssp TSCTTSGGGGCCCHHH-HHHCC
T ss_pred HHHhcCCCCHHHHHHH-HHHHH
Confidence 8999999999999999 88763
No 5
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=100.00 E-value=1.2e-43 Score=340.18 Aligned_cols=331 Identities=32% Similarity=0.478 Sum_probs=290.2
Q ss_pred hHhHHHHHHHHHHHhhcccccChhhhHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcccccccCCChHHHHHHHHHHH
Q 019214 3 LAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNE 82 (344)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 82 (344)
|+.|+++|++.++++++++.++|+.+++.+++++..|+++|++.+++.++++++.+....+.+..+.++.+.+..++.+.
T Consensus 2 ~~~l~~~l~~~~~~l~~~~~~~e~~~~~~l~e~~~~Ll~adv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~ 81 (425)
T 2ffh_A 2 FQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALGKQVLESLTPAEVILATVYEA 81 (425)
T ss_dssp CHHHHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTGGGCSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHccccccccCCcHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999888888888889999999999999
Q ss_pred HHhhcCCCCCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceecc
Q 019214 83 LCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGS 162 (344)
Q Consensus 83 l~~~l~~~~~~~~~~~~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~ 162 (344)
+...+.....+..+. ++.+++++|++|+||||++.+||..+...|++|.++++|++++++.+++..++...+++++..
T Consensus 82 L~~~~~~~~~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~ 159 (425)
T 2ffh_A 82 LKEALGGEARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEV 159 (425)
T ss_dssp HHHHTTSSCCCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEEC
T ss_pred HHHHhCCCcccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEec
Confidence 999997654444443 668999999999999999999999999999999999999999999999998888889998876
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHHHHHHHhccCCc
Q 019214 163 YTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSV 242 (344)
Q Consensus 163 ~~~~~~~~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~~~~~~~~~~~~ 242 (344)
....++..++.+.+..++..+||++||||||..+.+...+.++..+.....+|.+++|+|+..+.+....+..|.+..++
T Consensus 160 ~~~~~p~~i~~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~av~~a~~f~~~l~i 239 (425)
T 2ffh_A 160 MDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGV 239 (425)
T ss_dssp CTTCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHHHHHHHHHHHhcCCc
Confidence 66678888888888887667999999999999877767777777777777899999999998888888888888877788
Q ss_pred CEEEeecCCCCCChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCCCchHHHHHH
Q 019214 243 GAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELLQK 322 (344)
Q Consensus 243 ~~lVinK~D~~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~~~~~~~~~~ 322 (344)
.++|+||+|...+.|..++....++.||.|+++|+.++++.++++..+++++.|.||+..|++.+++..+.+..++++
T Consensus 240 ~GVIlTKlD~~~~~g~alsi~~~~g~PI~flg~Ge~~~dl~~f~~~~~a~~ilg~gD~~~lie~a~~~~~~~~~~~~~-- 317 (425)
T 2ffh_A 240 TGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGMGDVASLAEKVRAAGLEAEAPKSA-- 317 (425)
T ss_dssp CEEEEESGGGCSSCHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHTSSCCCCHHHHHHHC------------
T ss_pred eEEEEeCcCCcccHHHHHHHHHHHCCCEEEEeCCCChhhccccCHHHHHHHHhcCCcHHHHHHhcccccCHHHHHHHH--
Confidence 899999999999999999999999999999999999999999999999999999999999999998877655444443
Q ss_pred HhcCCcChHHHHHhHHhhc
Q 019214 323 LSEGNFTLRIMFSLCFQDS 341 (344)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~ 341 (344)
+ .|+++|+++| ++++
T Consensus 318 --~-~f~~~d~~~q-l~~~ 332 (425)
T 2ffh_A 318 --K-ELSLEDFLKQ-MQNL 332 (425)
T ss_dssp ----CCCHHHHHHH-HHHH
T ss_pred --H-hcCHHHHHHH-HHHh
Confidence 3 8999999999 8876
No 6
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=100.00 E-value=1.1e-44 Score=349.44 Aligned_cols=335 Identities=45% Similarity=0.747 Sum_probs=294.4
Q ss_pred hHhHHHHHHHHHHHhhcccccChhhhHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcccccccCCChHHHHHHHHHHH
Q 019214 3 LAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNE 82 (344)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 82 (344)
|+.|+++|++.+++++++++++|+.+++.+.+++..|+++|++..++.++.+.++..........+.++.+.+...+.++
T Consensus 1 ~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~e~~~~Ll~adv~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (432)
T 2v3c_C 1 MDKLGENLNKALNKLKAAAFVDKKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRALEEKTPKGLSKKEHIIKIVYEE 80 (432)
T ss_dssp CCHHHHHHHHHHHHCCSSSCCCSSTTHHHHHHHHHHHHHTCCCHHHHHHHTHHHHHHHSSSCSSCSSCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccccccccCChHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999998877666667788888888999999
Q ss_pred HHhhcCCCCCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceecc
Q 019214 83 LCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGS 162 (344)
Q Consensus 83 l~~~l~~~~~~~~~~~~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~ 162 (344)
+.+++.....++....+++++|+++|++||||||++++||..+..+|++|+++++|+||+++++++..++...+++++..
T Consensus 81 l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~ 160 (432)
T 2v3c_C 81 LVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGD 160 (432)
T ss_dssp HHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECC
T ss_pred HHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEec
Confidence 99999865444434445568999999999999999999999999999999999999999999999998888889988776
Q ss_pred C-CCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHHHHHHHhccC-
Q 019214 163 Y-TESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV- 240 (344)
Q Consensus 163 ~-~~~~~~~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~~~~~~~~~~- 240 (344)
. ...++...+.+++..+ .++|++||||||....+..++.++..+.....+|.+++|+|++.+.+....+..|....
T Consensus 161 ~~~~~dp~~i~~~~l~~~--~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~~~~~~~~~~~~~~ 238 (432)
T 2v3c_C 161 ETRTKSPVDIVKEGMEKF--KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQAGIQAKAFKEAVG 238 (432)
T ss_dssp SSSCCSSSTTHHHHHHTT--SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGGHHHHHHHHHTTSC
T ss_pred CCCCCCHHHHHHHHHHHh--hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHHHHHHHHHHhhccc
Confidence 5 4456555555666665 68999999999998877777777777766668999999999988877777777787666
Q ss_pred CcCEEEeecCCCCCChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCCCchHHHH
Q 019214 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELL 320 (344)
Q Consensus 241 ~~~~lVinK~D~~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~~~~~~~~ 320 (344)
++.++|+||+|.....+..++....++.|+.|+++|+.++++.++.+..++|+++|.||+..|++.+.+.++.+. .++.
T Consensus 239 ~i~gvVlnK~D~~~~~g~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~~~e~~-~~~~ 317 (432)
T 2v3c_C 239 EIGSIIVTKLDGSAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDMVDEKT-EESI 317 (432)
T ss_dssp SCEEEEEECSSSCSTTHHHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSCSCSSS-STTH
T ss_pred CCeEEEEeCCCCccchHHHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHHHHhhh-HHHH
Confidence 668999999999888888888888999999999999999999999999999999999999999999999998877 8899
Q ss_pred HHHhcCCcChHHHHHhHHhhc
Q 019214 321 QKLSEGNFTLRIMFSLCFQDS 341 (344)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~ 341 (344)
+++..++|+++|+++| ++++
T Consensus 318 ~k~~~~~~~~~~~~~~-l~~~ 337 (432)
T 2v3c_C 318 DAIMRGKFTLNELMTQ-LEAI 337 (432)
T ss_dssp HHHCCSCCHHHHHHHH-TTTT
T ss_pred HHHHcCCCCHHHHHHH-HHHH
Confidence 9999999999999999 8874
No 7
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=100.00 E-value=3.9e-39 Score=296.77 Aligned_cols=293 Identities=43% Similarity=0.688 Sum_probs=258.2
Q ss_pred HhHHHHHHHHHHHhhcccccChhhhHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcccccccCCChHHHHHHHHHHHH
Q 019214 4 AQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNEL 83 (344)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 83 (344)
+.|+++|++.+++++++++++|+.+++.+++++..|+++|++.+++.++++.+.+....+.+.++.++.+.+...+.+.+
T Consensus 1 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (297)
T 1j8m_F 1 SKLLDNLRDTVRKFLTGSSSYDKAVEDFIKELQKSLISADVNVKLVFSLTNKIKERLKNEKPPTYIERREWFIKIVYDEL 80 (297)
T ss_dssp --CHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCTTCCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccccccCChHHHHHHHHHHHH
Confidence 36889999999999999999999999999999999999999999999999999998877777778889898889999999
Q ss_pred HhhcCCCCCC-CCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceecc
Q 019214 84 CKMLDPGKPS-FTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGS 162 (344)
Q Consensus 84 ~~~l~~~~~~-~~~~~~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~ 162 (344)
...+.....+ ..+.. ++.+++++|++|+||||++++||..+...|++|.+++.|++|+++.+++..+.++.+++++..
T Consensus 81 ~~~~~~~~~~~i~~~~-~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~ 159 (297)
T 1j8m_F 81 SNLFGGDKEPKVIPDK-IPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGE 159 (297)
T ss_dssp HHHTTCSCCCCCSCSS-SSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECC
T ss_pred HHHhccccccccccCC-CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEec
Confidence 9998765433 33332 378999999999999999999999999999999999999999999999999988889988776
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCc--chHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHHHHHHHhccC
Q 019214 163 YTESDPVRIAVEGVETFKKENCDLIIVDTSGRHK--QEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV 240 (344)
Q Consensus 163 ~~~~~~~~~~~~~l~~~~~~~~d~vlIDT~G~~~--~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~~~~~~~~~~ 240 (344)
....++..++.+.+..+...+||+|||||||..+ .+..++.++..+.....+|.+++|+|+..+.+....+..+.+..
T Consensus 160 ~~~~~p~~~~~~~l~~~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~~~~~~~~~ 239 (297)
T 1j8m_F 160 PGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQAS 239 (297)
T ss_dssp TTCCCHHHHHHHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHHHHHHHHHHhhC
Confidence 5667888888888888876799999999999988 66667777777766678999999999988877777777777666
Q ss_pred CcCEEEeecCCCCCChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCC
Q 019214 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGM 297 (344)
Q Consensus 241 ~~~~lVinK~D~~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~ 297 (344)
++.++|+||+|.....+..++....++.|+.|+++|++++++.+|++..++++++|+
T Consensus 240 ~i~gvVlnk~D~~~~~g~~~~~~~~~~~pi~~i~~Ge~v~dl~~f~~~~~~~~ll~~ 296 (297)
T 1j8m_F 240 KIGTIIITKMDGTAKGGGALSAVAATGATIKFIGTGEKIDELEVFNPRRFVARLHHH 296 (297)
T ss_dssp TTEEEEEECGGGCTTHHHHHHHHHTTTCCEEEEECSSSTTCEEECCHHHHHHTTCTT
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHCcCEEEEeCCCChhhcccCCHHHHHHHHhCC
Confidence 778999999999988888899999999999999999999999999999999999875
No 8
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=100.00 E-value=1.4e-36 Score=283.07 Aligned_cols=295 Identities=32% Similarity=0.593 Sum_probs=257.7
Q ss_pred hHhHHHHHHHHHHHhhc-------------------ccccChhhhHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhccc
Q 019214 3 LAQLGGSISRAIQQMSN-------------------ATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLD 63 (344)
Q Consensus 3 ~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~ 63 (344)
|++|+.+|++..+++.+ +++++|+.+++.+++++..|+++||+.+++.++++.+++....+
T Consensus 8 f~~l~~~l~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~adv~~~~~~~~~~~~~~~~~~~ 87 (328)
T 3e70_C 8 FGKLREKLKSFVKRVEEEVEKEEEEVEKKGLLDRILTVEIKEKDVDKALDELEIDLLEADVALEVVDALREKIKQKLVGK 87 (328)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTC--------CCEEECCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhhhccccccccccccHHHHHhhccCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhc
Confidence 67888888877775444 56889999999999999999999999999999999999998888
Q ss_pred ccccCCChHHHHHHHHHHHHHhhcCCCCCCCCC-----CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecC
Q 019214 64 DLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTP-----KKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (344)
Q Consensus 64 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~-----~~~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D 138 (344)
.+..+.++.+.+.+.+.+++.+++..... ... ...++.+++++|++||||||++++|+..+...|.+|.+++.|
T Consensus 88 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~-~~~~~~~~~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D 166 (328)
T 3e70_C 88 KVRIGTDKGKIIEEAVKEAVSEILETSRR-IDLIEEIRKAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASD 166 (328)
T ss_dssp EEECC---CHHHHHHHHHHHHHHSCCSSC-CCHHHHHHSSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred ccCCccCHHHHHHHHHHHHHHHHhCCccc-cchhhhcccCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeec
Confidence 88888888899999999999999976431 111 234678999999999999999999999999889999999999
Q ss_pred cCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEE
Q 019214 139 TFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVI 218 (344)
Q Consensus 139 ~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~il 218 (344)
++|.++.+++..+..+.+++++......+|...+.+.+......++|++++||+|..+....++.++..+.+...+|..+
T Consensus 167 ~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~l 246 (328)
T 3e70_C 167 TFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVI 246 (328)
T ss_dssp CSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEE
T ss_pred ccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHHHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCE
Confidence 99999999999999999998877777778888777777766666899999999999877667778887777778899999
Q ss_pred EEEcCCcchhHHHHHHHHhccCCcCEEEeecCCCCCChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCC
Q 019214 219 FVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMG 298 (344)
Q Consensus 219 lvvda~~~~~~~~~~~~~~~~~~~~~lVinK~D~~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g 298 (344)
+++|++.+.+..+.+..|.+...+.++|+||+|.+...|..++....++.||.|+++|++++++.++++..++++++|++
T Consensus 247 lvLDa~t~~~~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v~dl~~~~~~~~~~~llg~~ 326 (328)
T 3e70_C 247 FVGDALAGNAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGYDDLRPFEKEWFLERIFGEE 326 (328)
T ss_dssp EEEEGGGTTHHHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSSTTCEEECCHHHHHHHHTC--
T ss_pred EEEecHHHHHHHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCccccccCCHHHHHHHHhCCc
Confidence 99999998888888898887778899999999999999999999999999999999999999999999999999999875
No 9
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=100.00 E-value=7.8e-36 Score=274.85 Aligned_cols=294 Identities=34% Similarity=0.509 Sum_probs=244.6
Q ss_pred hHhHHHHHHHHHHHhhcccccChhhhHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcccccccCCChHHHHHHHHHHH
Q 019214 3 LAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNE 82 (344)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 82 (344)
|++|+++|++.++++.+++.++++.+.+.+++++..|+.++++.+++.++++++......+....+.++.+.+...+.+.
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~Ll~ad~~~~~~~~l~d~v~~~~~g~~~~~~~~~~~~~~~~~~~~ 81 (295)
T 1ls1_A 2 FQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVILATVYEA 81 (295)
T ss_dssp CHHHHHHHHHHHHTTTTSCSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTTTCSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHccccccccCCcHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999988766655544456656666777777
Q ss_pred HHhhcCCCCCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceecc
Q 019214 83 LCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGS 162 (344)
Q Consensus 83 l~~~l~~~~~~~~~~~~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~ 162 (344)
+...+.....+..+. ++.+++++|++|+||||++.+||..++..|.+|.+++.|++++++.+++..+....+++++..
T Consensus 82 l~~~~~~~~~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~ 159 (295)
T 1ls1_A 82 LKEALGGEARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEV 159 (295)
T ss_dssp HHHHTTSSCCCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEEC
T ss_pred HHHHHCCCCceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEc
Confidence 777775432333333 568999999999999999999999999999999999999999998888887777778887765
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHHHHHHHhccCCc
Q 019214 163 YTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSV 242 (344)
Q Consensus 163 ~~~~~~~~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~~~~~~~~~~~~ 242 (344)
....+|..+.+..+..+...+||++||||||....+...+.++..+.....++.+++|+|+..+.+..+.+..+++..++
T Consensus 160 ~~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~~~~~i 239 (295)
T 1ls1_A 160 MDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGV 239 (295)
T ss_dssp CTTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcHHHHHHHHHHhhcCCC
Confidence 55667877777778777656899999999998877666677776666666799999999998777777777777766778
Q ss_pred CEEEeecCCCCCChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCC
Q 019214 243 GAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMG 298 (344)
Q Consensus 243 ~~lVinK~D~~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g 298 (344)
.++|+||+|.....|..++....+++|+.|+++||+++++.+|++..++++++|+|
T Consensus 240 ~givlnk~d~~~~~g~~~~~~~~~~~pi~~i~~g~~~~dl~~f~~~~~~~~ll~~g 295 (295)
T 1ls1_A 240 TGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGMG 295 (295)
T ss_dssp CEEEEECGGGCSSCHHHHHHHHHHCCCEEEEC------CCEECCHHHHHHHHTTCC
T ss_pred CEEEEECCCCCccHHHHHHHHHHHCcCEEEEeCCCCccccccCCHHHHHHHHhcCC
Confidence 89999999999999999999999999999999999999999999999999999986
No 10
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=100.00 E-value=1.1e-35 Score=276.37 Aligned_cols=285 Identities=28% Similarity=0.494 Sum_probs=238.1
Q ss_pred hHhHHHHHHHHHHHhhcc-cccChhhhHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcccccccCCChHHHHHHHHHH
Q 019214 3 LAQLGGSISRAIQQMSNA-TIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFN 81 (344)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 81 (344)
+.+++++|++.++++.+. +.++|+ .+++++..|+++|++.+++.++++++.+....+.+. ..+.+.+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 80 (320)
T 1zu4_A 11 MLKSAFNFSKDIKKLSKKYKQADDE----FFEELEDVLIQTDMGMKMVLKVSNLVRKKTKRDTSF------ENIKDALVE 80 (320)
T ss_dssp THHHHHHHHHHHHHHHHTCCCCSHH----HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTTCCH------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhchhH------HHHHHHHHH
Confidence 567888999999998764 778886 568999999999999999999999998876554432 117788999
Q ss_pred HHHhhcCCCC-----CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcc---
Q 019214 82 ELCKMLDPGK-----PSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNAT--- 153 (344)
Q Consensus 82 ~l~~~l~~~~-----~~~~~~~~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~--- 153 (344)
++.+++.... .+..+...++++++++|++|+||||++.+||..++..|++|.++++|++|+++.+++..|..
T Consensus 81 ~l~~~l~~~~~~~~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~ 160 (320)
T 1zu4_A 81 SLYQAYTDNDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRL 160 (320)
T ss_dssp HHHHHHHCSCC----CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTS
T ss_pred HHHHHhCcccccccccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccc
Confidence 9999887654 34445455678999999999999999999999999999999999999999998888888876
Q ss_pred cCCccee-ccCCCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhc------CCcEEEEEEcCCcc
Q 019214 154 KAKIPFY-GSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEAT------NPDLVIFVMDSSIG 226 (344)
Q Consensus 154 ~~~v~~~-~~~~~~~~~~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~------~~d~illvvda~~~ 226 (344)
+.+++++ ......++...+.+.+......+||+|||||||........+.++..+.... .+|.+++|+++..+
T Consensus 161 ~~~l~vip~~~~~~~p~~~~~~~l~~~~~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~ 240 (320)
T 1zu4_A 161 NNKVDLVKANKLNADPASVVFDAIKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG 240 (320)
T ss_dssp CTTEEEECCSSTTCCHHHHHHHHHHHHHHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT
T ss_pred cCCceEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc
Confidence 7778776 4445567777777777766667999999999999887666666665544332 47899999999887
Q ss_pred hhHHHHHHHHhccCCcCEEEeecCCCCCChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCC
Q 019214 227 QAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGM 297 (344)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~lVinK~D~~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~ 297 (344)
.+....+..|.+...+.++|+||+|.+..+|..++....+++|+.|+++|++++++.++++..++++++|.
T Consensus 241 ~~~l~~~~~~~~~~~i~GvVltk~d~~~~~g~~~~~~~~~~~Pi~~i~~Ge~~~dl~~~~~~~~~~~ll~~ 311 (320)
T 1zu4_A 241 QNGVIQAEEFSKVADVSGIILTKMDSTSKGGIGLAIKELLNIPIKMIGVGEKVDDLLAFDIDQYIVHLSSG 311 (320)
T ss_dssp HHHHHHHHHHTTTSCCCEEEEECGGGCSCTTHHHHHHHHHCCCEEEEECSSSTTCEEECCHHHHHHHHTGG
T ss_pred HHHHHHHHHHhhcCCCcEEEEeCCCCCCchhHHHHHHHHHCcCEEEEeCCCCccccccCCHHHHHHHHhCC
Confidence 77777777787777788999999999998899999999999999999999999999999999999999983
No 11
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=100.00 E-value=8.7e-36 Score=275.13 Aligned_cols=278 Identities=30% Similarity=0.485 Sum_probs=233.3
Q ss_pred hHhHHHHHHHHHHHhhcccccChhhhHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcccccccCCChHHHHHHHHHHH
Q 019214 3 LAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNE 82 (344)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 82 (344)
+.+.+++|++.++++....+++|+ .+++++..|.++|++.+++.++++++.+ .++. +.+++.++
T Consensus 23 l~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~L~~~dv~~~~~~~~~~~~~~----------~~~~--~~~~~~~~ 86 (306)
T 1vma_A 23 LQKTKETFFGRVVKLLKGKKLDDE----TREELEELLIQADVGVETTEYILERLEE----------KDGD--ALESLKEI 86 (306)
T ss_dssp HHHHHHHTHHHHHHHHTTCCCCHH----HHHHHHHHHHHTTCCHHHHHHHHHHHTT----------CCSC--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHHCCCCHHHHHHHHHHHHh----------cCHH--HHHHHHHH
Confidence 344556666667777642278875 5689999999999999999999998765 1233 66889999
Q ss_pred HHhhcCCCCCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceecc
Q 019214 83 LCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGS 162 (344)
Q Consensus 83 l~~~l~~~~~~~~~~~~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~ 162 (344)
+.+++.... +..+...++.+++++|++|+||||++.+||..+...|.+|.++++|++|+++.+++..|..+.+++++..
T Consensus 87 l~~~l~~~~-~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~ 165 (306)
T 1vma_A 87 ILEILNFDT-KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISH 165 (306)
T ss_dssp HHHHTCSCC-CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECC
T ss_pred HHHHhCCCC-CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEec
Confidence 999997654 4444345678999999999999999999999999899999999999999999999999998888888776
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhc------CCcEEEEEEcCCcchhHHHHHHHH
Q 019214 163 YTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEAT------NPDLVIFVMDSSIGQAAFDQAQAF 236 (344)
Q Consensus 163 ~~~~~~~~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~------~~d~illvvda~~~~~~~~~~~~~ 236 (344)
..+.++..+..+++......++|++||||||.......++.++..+.... .++.+++|+|++.+.+....+..|
T Consensus 166 ~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~~~l~~a~~~ 245 (306)
T 1vma_A 166 SEGADPAAVAFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIF 245 (306)
T ss_dssp STTCCHHHHHHHHHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHHHHHH
Confidence 67778888877777776677999999999999777777777776555432 488999999998777777777778
Q ss_pred hccCCcCEEEeecCCCCCChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCC
Q 019214 237 KQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGM 297 (344)
Q Consensus 237 ~~~~~~~~lVinK~D~~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~ 297 (344)
.+..++.++|+||+|.+..+|.+++....+++||.|+++|++++|+.+|++..++++++|+
T Consensus 246 ~~~~~i~gvVlTk~D~~~~gG~~l~~~~~~~~Pi~~i~~Ge~~~dl~~f~~~~~~~~ll~~ 306 (306)
T 1vma_A 246 KEAVNVTGIILTKLDGTAKGGITLAIARELGIPIKFIGVGEKAEDLRPFDPEAFVEVLLSE 306 (306)
T ss_dssp HHHSCCCEEEEECGGGCSCTTHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHTCC
T ss_pred HhcCCCCEEEEeCCCCccchHHHHHHHHHHCCCEEEEeCCCChhhcccCCHHHHHHHHhCC
Confidence 7777889999999999999999999999999999999999999999999999999999874
No 12
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=100.00 E-value=1e-33 Score=273.53 Aligned_cols=278 Identities=28% Similarity=0.473 Sum_probs=233.1
Q ss_pred HHHHhhcccccChhhhHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcccccccCCChHHHHHHHHHHHHHhhcCCCCC
Q 019214 13 AIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKP 92 (344)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 92 (344)
.+.++...+++++. .+++|+..|+++||+.+++..+++++........ .++.+.+...+++.+.+++.....
T Consensus 213 ~l~~~~~~~~ide~----~l~el~~~Ll~aDv~~~~~~~l~~~l~~~~~~~~----~~~~~~~~~~l~~~l~~~l~~~~~ 284 (503)
T 2yhs_A 213 GFISLFRGKKIDDD----LFEELEEQLLIADVGVETTRKIITNLTEGASRKQ----LRDAEALYGLLKEEMGEILAKVDE 284 (503)
T ss_dssp HHHHHHTTCBCSHH----HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHT----CCBGGGHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHhccCCCCHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcc----CCCHHHHHHHHHHHHHHHhCCCCC
Confidence 34445445667775 5689999999999999999999999988765433 345567778899999998876554
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHH
Q 019214 93 SFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIA 172 (344)
Q Consensus 93 ~~~~~~~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~ 172 (344)
+..+...++.+++|+|++||||||++.+|+..+...|.+|.+.+.|++|.++.+++..|..+.+++++......++...+
T Consensus 285 ~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV 364 (503)
T 2yhs_A 285 PLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVI 364 (503)
T ss_dssp CCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHH
T ss_pred CceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHH
Confidence 55555556789999999999999999999999988889999999999999888888888777778776666566777777
Q ss_pred HHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhh------cCCcEEEEEEcCCcchhHHHHHHHHhccCCcCEEE
Q 019214 173 VEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEA------TNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVI 246 (344)
Q Consensus 173 ~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~------~~~d~illvvda~~~~~~~~~~~~~~~~~~~~~lV 246 (344)
.+.+......++|++||||+|+.+....++.++..+.+. ..++.++||+|++.+.+.++.+..|+....+.++|
T Consensus 365 ~e~l~~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~ak~f~~~~~itgvI 444 (503)
T 2yhs_A 365 FDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGIT 444 (503)
T ss_dssp HHHHHHHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHHHHHHHHTCCSEEE
T ss_pred HHHHHHHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHHHHHHhhcCCCEEE
Confidence 787877777799999999999988777777776654432 23788999999999988888889998877889999
Q ss_pred eecCCCCCChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCC
Q 019214 247 VTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMG 298 (344)
Q Consensus 247 inK~D~~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g 298 (344)
+||+|.+.++|..+.++..+++||.|+++|++++++.++++..++++++|..
T Consensus 445 lTKLD~takgG~~lsi~~~~~~PI~fig~Ge~vdDL~~f~~~~~v~~llg~~ 496 (503)
T 2yhs_A 445 LTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALFARE 496 (503)
T ss_dssp EECGGGCSCCTHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHCC-
T ss_pred EEcCCCcccccHHHHHHHHHCCCEEEEecCCChhhcccCCHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999999876
No 13
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=100.00 E-value=6.7e-33 Score=255.89 Aligned_cols=283 Identities=33% Similarity=0.513 Sum_probs=213.0
Q ss_pred hHhHHHHHHHHHHHhhcccccChhhhHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcccccccCCChHHHHHHHHHHH
Q 019214 3 LAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNE 82 (344)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 82 (344)
|++|+.+|++..++++++..+++ .+++.+++++..|.++|++.+++.++++++.+... +.+.+.+.++
T Consensus 4 ~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~ 71 (304)
T 1rj9_A 4 FDRLKAGLAKTRERLLKAIPWGG-NLEEVLEELEMALLAADVGLSATEEILQEVRASGR-----------KDLKEAVKEK 71 (304)
T ss_dssp ------------------------CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTCC-----------SSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccccch-hhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-----------HHHHHHHHHH
Confidence 67899999999999998888887 77889999999999999999999999999987543 2234778888
Q ss_pred HHhhcCCCCC-----CCCCC-------CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHh
Q 019214 83 LCKMLDPGKP-----SFTPK-------KGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQ 150 (344)
Q Consensus 83 l~~~l~~~~~-----~~~~~-------~~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~ 150 (344)
+.+++..... +..+. .+++.+++++||+||||||++++|+..+...+.+|.+.+.|+++.++.+++..
T Consensus 72 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~ 151 (304)
T 1rj9_A 72 LVGMLEPDERRATLRKLGFNPQKPKPVEPKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSE 151 (304)
T ss_dssp HTTTTCTTCHHHHHHHTTCCCCCCCCCCCSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHH
T ss_pred HHHHhCcccccccccccccccccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHH
Confidence 8888875432 22221 23567999999999999999999999998889999999999999998888888
Q ss_pred hcccCCcceeccCCCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhh----h--cCCcEEEEEEcCC
Q 019214 151 NATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSE----A--TNPDLVIFVMDSS 224 (344)
Q Consensus 151 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~----~--~~~d~illvvda~ 224 (344)
|..+.+++++......++...+.+.+......+++++++||+|..+.....+.++..... + ..|+.+++++|+.
T Consensus 152 ~~~~~~i~~v~q~~~~~p~~~v~~~v~~~~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~ 231 (304)
T 1rj9_A 152 WGKRLSIPVIQGPEGTDSAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAV 231 (304)
T ss_dssp HHHHHTCCEECCCTTCCHHHHHHHHHHHHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETT
T ss_pred HHHhcCceEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHH
Confidence 877777777665556677766666666554557899999999987766666655543221 2 2588899999999
Q ss_pred cchhHHHHHHHHhccCCcCEEEeecCCCCCChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCC
Q 019214 225 IGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGM 297 (344)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~lVinK~D~~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~ 297 (344)
.+.+..+.+..+.+.....++|+||.|.+..+|.++.....++.||.|+++||+++|+.+|++..++++++|.
T Consensus 232 t~~~~~~~~~~~~~~~~~t~iivTh~d~~a~gg~~l~i~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~~~ll~~ 304 (304)
T 1rj9_A 232 TGQNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDPEAFVEALLED 304 (304)
T ss_dssp BCTHHHHHHHHHHHHHCCSEEEEECTTSSCCCTTHHHHHHHHCCCEEEEECSSSTTCEEECCHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEECCcccccccHHHHHHHHHCCCeEEEeCCCChhhcccCCHHHHHHHHhCC
Confidence 9888888888887666678999999999999999999999999999999999999999999999999999863
No 14
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=9.3e-32 Score=252.78 Aligned_cols=287 Identities=28% Similarity=0.442 Sum_probs=234.5
Q ss_pred hHhHHHHHHHHHHHhh-------cccccChhhhHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcccccccCCChHHHH
Q 019214 3 LAQLGGSISRAIQQMS-------NATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRII 75 (344)
Q Consensus 3 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (344)
|++|+.+|++..+++. +++.++ +++.+++++..|+++|++.+++.++++++.+....+.+ ++.+.+
T Consensus 57 f~~l~~~l~~~~~~~~~~~~l~~~~~~~~---~~~~~~~l~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 129 (359)
T 2og2_A 57 VEKVFSGFSKTRENLAVIDELLLFWNLAE---TDRVLDELEEALLVSDFGPKITVRIVERLREDIMSGKL----KSGSEI 129 (359)
T ss_dssp HHHHHHHTHHHHHHHTHHHHHHTTCCGGG---HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTSC----CSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcCC---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcCC----CCHHHH
Confidence 5677777777777765 233333 56788999999999999999999999999987765443 566788
Q ss_pred HHHHHHHHHhhcCCCC--CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcc
Q 019214 76 QQAIFNELCKMLDPGK--PSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNAT 153 (344)
Q Consensus 76 ~~~l~~~l~~~l~~~~--~~~~~~~~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~ 153 (344)
...+.+++.+++.... .+..+...++.+++++|++||||||++.+|+..+...+.+|.+.+.|++|.++.+|+..|..
T Consensus 130 ~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~ 209 (359)
T 2og2_A 130 KDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAE 209 (359)
T ss_dssp HHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHH
Confidence 8999999999997654 44444445678999999999999999999999998888999999999999999999988887
Q ss_pred cCCcceeccCCC-CCHHHHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHh----hhh--cCCcEEEEEEcCCcc
Q 019214 154 KAKIPFYGSYTE-SDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQV----SEA--TNPDLVIFVMDSSIG 226 (344)
Q Consensus 154 ~~~v~~~~~~~~-~~~~~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~----~~~--~~~d~illvvda~~~ 226 (344)
+.+++++..... .++...+.+.+......++|.+++||+|+.+.....+.++... .++ ..|+.+++|+||+.+
T Consensus 210 r~~i~~v~q~~~~~~p~~tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttg 289 (359)
T 2og2_A 210 RTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTG 289 (359)
T ss_dssp HHTCEEECCSSSSCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGG
T ss_pred hcCeEEEEecccccChhhhHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCC
Confidence 778887665555 6777777777765555578999999999977665665555322 222 257888999998888
Q ss_pred hhHHHHHHHHhccCCcCEEEeecCCCCCChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhC
Q 019214 227 QAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLG 296 (344)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~lVinK~D~~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g 296 (344)
.+....+..|.+.....++|+||.|.+.++|..++....++.||.|+++|+.++|+.+|++..++++++|
T Consensus 290 lD~~~~~~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~~Dl~~f~~~~~~~~ll~ 359 (359)
T 2og2_A 290 LNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNAIFS 359 (359)
T ss_dssp GGGHHHHHHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHC
T ss_pred CCHHHHHHHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCChHhccCCCHHHHHHHHhC
Confidence 8877777788766677899999999999999999999999999999999999999999999999998875
No 15
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=100.00 E-value=7.5e-31 Score=242.09 Aligned_cols=286 Identities=28% Similarity=0.446 Sum_probs=229.0
Q ss_pred hHhHHHHHHHHHHHhhc-ccccChhhhHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcccccccCCChHHHHHHHHHH
Q 019214 3 LAQLGGSISRAIQQMSN-ATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFN 81 (344)
Q Consensus 3 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 81 (344)
+++.+++|+ .++++.. +++++ +++.+++++..|.++|++.+++.++++++.+....+.+ ++.+.+.+.+.+
T Consensus 7 l~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 78 (302)
T 3b9q_A 7 FSKTRENLA-VIDELLLFWNLAE---TDRVLDELEEALLVSDFGPKITVRIVERLREDIMSGKL----KSGSEIKDALKE 78 (302)
T ss_dssp THHHHHHHT-HHHHHHTTCCGGG---HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTSC----CSHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHcCCCcCC---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcCC----CCHHHHHHHHHH
Confidence 456667777 6777654 55666 34577999999999999999999999999887655433 456778899999
Q ss_pred HHHhhcCCCC--CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcce
Q 019214 82 ELCKMLDPGK--PSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPF 159 (344)
Q Consensus 82 ~l~~~l~~~~--~~~~~~~~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~ 159 (344)
++.+++.... .+..+...++.+++++|++||||||++++|+..+...+.+|.+.+.|++|.++.+++..|..+.++++
T Consensus 79 ~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~ 158 (302)
T 3b9q_A 79 SVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEI 158 (302)
T ss_dssp HHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceE
Confidence 9999997654 34444445678999999999999999999999998889999999999999999999988887777877
Q ss_pred eccCCC-CCHHHHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHh----hhh--cCCcEEEEEEcCCcchhHHHH
Q 019214 160 YGSYTE-SDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQV----SEA--TNPDLVIFVMDSSIGQAAFDQ 232 (344)
Q Consensus 160 ~~~~~~-~~~~~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~----~~~--~~~d~illvvda~~~~~~~~~ 232 (344)
+..... .++...+.+.+......+++.+++||+|+.+.....+.++... .++ ..|+.+++++||+.+.+....
T Consensus 159 v~q~~~~~~~~~~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~ 238 (302)
T 3b9q_A 159 VVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ 238 (302)
T ss_dssp ECCC--CCCHHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHH
T ss_pred EEecCCccCHHHHHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHH
Confidence 665555 5676666676665444578899999999977665555555322 222 257888999998888777777
Q ss_pred HHHHhccCCcCEEEeecCCCCCChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhC
Q 019214 233 AQAFKQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLG 296 (344)
Q Consensus 233 ~~~~~~~~~~~~lVinK~D~~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g 296 (344)
+..|.+.....++++||.|.+.++|..++....++.||.|+++|+.++++.++++..++++++|
T Consensus 239 ~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~~dl~~f~~~~~~~~llg 302 (302)
T 3b9q_A 239 AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNAIFS 302 (302)
T ss_dssp HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHC
T ss_pred HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCChhhcccCCHHHHHHHHhC
Confidence 7777766677899999999999999999999999999999999999999999999999998875
No 16
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.97 E-value=3.7e-29 Score=230.20 Aligned_cols=256 Identities=24% Similarity=0.327 Sum_probs=200.4
Q ss_pred hhHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HHhhcccccccCCChHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEEE
Q 019214 27 VLNECLNEITRALLQADVQFKLVREMQTNI-KKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIM 105 (344)
Q Consensus 27 ~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~ii~ 105 (344)
..++.+++++..|.++|++.+++.++++++ ...+... ..++ +.+...+.+++.+++..... ..+ ..++.+++
T Consensus 37 ~~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~l~~~l~~~~~-~~~-~~~g~vi~ 109 (296)
T 2px0_A 37 VLPEPLRKAEKLLQETGIKESTKTNTLKKLLRFSVEAG----GLTE-ENVVGKLQEILCDMLPSADK-WQE-PIHSKYIV 109 (296)
T ss_dssp --CCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHSSS----CCCT-TTHHHHHHHHHHTTSCCGGG-SCC-CCCSSEEE
T ss_pred ccHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhccc----CCCH-HHHHHHHHHHHHHHhCCccc-ccc-cCCCcEEE
Confidence 345577999999999999999999999998 4544332 2233 45668888999998865432 122 23457999
Q ss_pred EEcCCCCCHHHHHHHHHHHHHH-cCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHhCCC
Q 019214 106 FVGLQGSGKTTTCTKYAYYHQK-KGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENC 184 (344)
Q Consensus 106 ivG~~GvGKTTl~~~La~~l~~-~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 184 (344)
++|++||||||++.+||..+.. .|++|++++.|++|+++.+++..+....+++++... ++. .+..++..+ .++
T Consensus 110 lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~---~~~-~l~~al~~~--~~~ 183 (296)
T 2px0_A 110 LFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCY---TKE-EFQQAKELF--SEY 183 (296)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCS---SHH-HHHHHHHHG--GGS
T ss_pred EECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecC---CHH-HHHHHHHHh--cCC
Confidence 9999999999999999999985 899999999999999999999999888888765432 232 234455544 589
Q ss_pred CEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHH-HHHHHHhccCCcCEEEeecCCCCCChhhHHHHH
Q 019214 185 DLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF-DQAQAFKQSVSVGAVIVTKMDGHAKGGGALSAV 263 (344)
Q Consensus 185 d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~-~~~~~~~~~~~~~~lVinK~D~~~~~~~~~~~~ 263 (344)
|++||||||..+.....+.++..+.....++.+++|+|++.+.... .....|. ...+.++|+||+|.+...|..++..
T Consensus 184 dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~-~l~~~giVltk~D~~~~~g~~~~~~ 262 (296)
T 2px0_A 184 DHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFS-SVPVNQYIFTKIDETTSLGSVFNIL 262 (296)
T ss_dssp SEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTS-SSCCCEEEEECTTTCSCCHHHHHHH
T ss_pred CEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHh-cCCCCEEEEeCCCcccchhHHHHHH
Confidence 9999999999877666666666555444578899999998774433 3344444 4567899999999999999999999
Q ss_pred HHhCCCeEEEecCCCC-CcCcCCChHHHHHHHhC
Q 019214 264 AATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLG 296 (344)
Q Consensus 264 ~~~~~pv~~~~~g~~~-~~l~~~~~~~~is~~~g 296 (344)
..+++|+.|+++|+++ +++.++++..++++++|
T Consensus 263 ~~~~~pi~~i~~ge~vp~dl~~f~~~~~~~~llg 296 (296)
T 2px0_A 263 AESKIGVGFMTNGQNVPEDIQTVSPLGFVRMLCR 296 (296)
T ss_dssp HTCSCCCSEECCSSCTTTSCBCCCHHHHHHHHTC
T ss_pred HHHCcCEEEEECCCCChHHHhcCCHHHHHHHHcC
Confidence 9999999999999999 79999999999998875
No 17
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.73 E-value=6.7e-18 Score=159.19 Aligned_cols=190 Identities=18% Similarity=0.200 Sum_probs=111.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcch---hH----HHHHhhcccCCcceeccCCCCC---HH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG---AF----DQLKQNATKAKIPFYGSYTESD---PV 169 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~---~~----~~l~~~~~~~~v~~~~~~~~~~---~~ 169 (344)
+..+|+++|+|||||||++++|+..+...|++|++++.||..+. +. ..+.......++.+........ ..
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 157 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVT 157 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccchh
Confidence 45789999999999999999999999999999999999986543 11 1112222223333332222222 12
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHHHHHHHhccCCcCEEEeec
Q 019214 170 RIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTK 249 (344)
Q Consensus 170 ~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~~~~~~~~~~~~~~lVinK 249 (344)
....+.+..+...+++++||||||+....... ...+|.+++|+|++.+.........+.+ .+.++|+||
T Consensus 158 ~~t~d~i~~~~~~~~~~iiiDTpGi~~~~~~~---------~~~aD~vl~V~d~~~~~~~~~l~~~~~~--~p~ivVlNK 226 (355)
T 3p32_A 158 RATRETVVLLEAAGFDVILIETVGVGQSEVAV---------ANMVDTFVLLTLARTGDQLQGIKKGVLE--LADIVVVNK 226 (355)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSCSSHHHHH---------HTTCSEEEEEEESSTTCTTTTCCTTSGG--GCSEEEEEC
T ss_pred HHHHHHHHHHhhCCCCEEEEeCCCCCcHHHHH---------HHhCCEEEEEECCCCCccHHHHHHhHhh--cCCEEEEEC
Confidence 33445555556678999999999987643221 2458999999998765332111111111 256899999
Q ss_pred CCCCCChhh--HHHHHH----HhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 250 MDGHAKGGG--ALSAVA----ATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 250 ~D~~~~~~~--~~~~~~----~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
+|.....+. ....+. ..+ . ..-....+.+.+|+++|+| +++|++.|.+.++
T Consensus 227 ~Dl~~~~~~~~~~~~l~~~l~~~~---------~--~~~~~~~~vi~iSA~~g~G-i~~L~~~i~~~~~ 283 (355)
T 3p32_A 227 ADGEHHKEARLAARELSAAIRLIY---------P--REALWRPPVLTMSAVEGRG-LAELWDTVERHRQ 283 (355)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHHS---------T--TCCSCCCCEEEEBGGGTBS-HHHHHHHHHHHHH
T ss_pred CCCcChhHHHHHHHHHHHHHhhcc---------c--cccCCCCceEEEEcCCCCC-HHHHHHHHHHHHH
Confidence 998643221 111111 111 0 0000112445577778888 8888888777653
No 18
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.65 E-value=4.5e-18 Score=165.83 Aligned_cols=155 Identities=18% Similarity=0.198 Sum_probs=78.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
..|+++|+|||||||++|+|+ |.+.++++. .+.+++.........
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~------~~~~a~vs~-----------~~gtT~d~~~~~i~~------------------ 278 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLL------GQERAIVSH-----------MPGTTRDYIEECFIH------------------ 278 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC-----------------------------------CEEEEE------------------
T ss_pred CEEEEECCCCCCHHHHHHHHh------CCCCcccCC-----------CCCceEEEEEEEEEE------------------
Confidence 569999999999999999999 776666665 333333322211111
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHH---HHhhhhcCCcEEEEEEcCCcch------hHHHHHHHHhccCCcCEEEeecCCC
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEM---RQVSEATNPDLVIFVMDSSIGQ------AAFDQAQAFKQSVSVGAVIVTKMDG 252 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l---~~~~~~~~~d~illvvda~~~~------~~~~~~~~~~~~~~~~~lVinK~D~ 252 (344)
.++.+.|+||||..... ...+.+ +.......+|.+++|+|++.+. ........+. ..+..+|+||+|+
T Consensus 279 ~g~~l~liDT~G~~~~~-~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl 355 (476)
T 3gee_A 279 DKTMFRLTDTAGLREAG-EEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDR 355 (476)
T ss_dssp TTEEEEEEC---------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTS
T ss_pred CCeEEEEEECCCCCcch-hHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCC
Confidence 26778999999986533 222221 1223345789999999998753 2222333332 2456888999999
Q ss_pred CCChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 253 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 253 ~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
..........+...+ +.+.+.+|+++|+| +++|+++|.+.+.
T Consensus 356 ~~~~~~~~~~l~~~~-----------------~~~~i~vSAktg~G-I~eL~~~i~~~~~ 397 (476)
T 3gee_A 356 AANADALIRAIADGT-----------------GTEVIGISALNGDG-IDTLKQHMGDLVK 397 (476)
T ss_dssp CTTTHHHHHHHHHHH-----------------TSCEEECBTTTTBS-HHHHHHHHTHHHH
T ss_pred CCccchhHHHHHhcC-----------------CCceEEEEECCCCC-HHHHHHHHHHHHh
Confidence 765332222222210 12234567788888 8888888877653
No 19
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.62 E-value=9.6e-16 Score=143.61 Aligned_cols=189 Identities=17% Similarity=0.137 Sum_probs=103.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhH-------HHHHhhcccCCcceeccCCCC---CHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAF-------DQLKQNATKAKIPFYGSYTES---DPV 169 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~-------~~l~~~~~~~~v~~~~~~~~~---~~~ 169 (344)
+..+++++|+||+||||++++|+..+...|.+|++++.|++..... ..+.......+..+....... ...
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~~ 134 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGAS 134 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchhH
Confidence 4578999999999999999999999998899999999999765311 001100111111111111110 111
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHHHHHHHhccCCcCEEEeec
Q 019214 170 RIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTK 249 (344)
Q Consensus 170 ~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~~~~~~~~~~~~~~lVinK 249 (344)
....+.+..+...+++++||||||........ ...+|.+++|+|++.+............ .+..+|+||
T Consensus 135 ~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~~---------~~~aD~vl~Vvd~~~~~~~~~l~~~~~~--~p~ivv~NK 203 (341)
T 2p67_A 135 QRARELMLLCEAAGYDVVIVETVGVGQSETEV---------ARMVDCFISLQIAGGGDDLQGIKKGLME--VADLIVINK 203 (341)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEECCTTHHHHH---------HTTCSEEEEEECC------CCCCHHHHH--HCSEEEECC
T ss_pred HHHHHHHHHhhccCCCEEEEeCCCccchHHHH---------HHhCCEEEEEEeCCccHHHHHHHHhhhc--ccCEEEEEC
Confidence 12223333444568999999999987543211 2468999999999755321000001011 235889999
Q ss_pred CCCCCChh--hHHHHHHH----hCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 250 MDGHAKGG--GALSAVAA----TKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 250 ~D~~~~~~--~~~~~~~~----~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
+|...... .....+.. .+ ..-. ....+.+.+|+++|+| ++.|++.|.+.+
T Consensus 204 ~Dl~~~~~~~~~~~~l~~~l~~~~---------~~~~--~~~~~vi~iSA~~g~g-i~~L~~~l~~~~ 259 (341)
T 2p67_A 204 DDGDNHTNVAIARHMYESALHILR---------RKYD--EWQPRVLTCSALEKRG-IDEIWHAIIDFK 259 (341)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHSC---------CSBT--TBCCEEEECBGGGTBS-HHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHhcc---------cccc--CCCCcEEEeeCCCCCC-HHHHHHHHHHHH
Confidence 99875321 11111111 01 0000 0012345678888888 888888887754
No 20
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.62 E-value=1.4e-15 Score=142.78 Aligned_cols=186 Identities=18% Similarity=0.164 Sum_probs=101.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchh-------HHHHHhhcccCCcceeccC-------CCC
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA-------FDQLKQNATKAKIPFYGSY-------TES 166 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~-------~~~l~~~~~~~~v~~~~~~-------~~~ 166 (344)
..+|+|+|+|||||||++++|+..+...+.+|+++..||+.... ...+........+.+.... ...
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~tr 153 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVTR 153 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------CT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccchH
Confidence 57899999999999999999999998889999999999976431 1122222211111111000 111
Q ss_pred CHHHHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHHHHHHHhccCCcCEEE
Q 019214 167 DPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVI 246 (344)
Q Consensus 167 ~~~~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~~~~~~~~~~~~~~lV 246 (344)
+ ..+++..+...+++++|+||||+......+ ...+|.+++|+|++.+.........+.. .+..+|
T Consensus 154 ~----~~~~~~~~~~~~~~~iliDT~Gi~~~~~~l---------~~~~d~vl~V~d~~~~~~~~~i~~~il~--~~~ivV 218 (349)
T 2www_A 154 T----TNEAILLCEGAGYDIILIETVGVGQSEFAV---------ADMVDMFVLLLPPAGGDELQGIKRGIIE--MADLVA 218 (349)
T ss_dssp T----HHHHHHHHHHTTCSEEEEECCCC--CHHHH---------HTTCSEEEEEECCC------------CC--SCSEEE
T ss_pred H----HHHHHHhhccCCCCEEEEECCCcchhhhhH---------HhhCCEEEEEEcCCcchhHHHhHHHHHh--cCCEEE
Confidence 1 112233333468999999999986543221 2357999999999865322111111111 246889
Q ss_pred eecCCCCCChhh--HHHHHH-HhCCCeEEEecCCCCC-cCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 247 VTKMDGHAKGGG--ALSAVA-ATKSPVIFIGTGEHMD-EFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 247 inK~D~~~~~~~--~~~~~~-~~~~pv~~~~~g~~~~-~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
+||+|.....+. ....+. ... ...+ ......+.+++|+++|+| ++.|++.|.+.+
T Consensus 219 lNK~Dl~~~~~~~~~~~~l~~~l~---------~~~~~a~~~~~~vi~iSA~~g~G-i~~L~~~I~~~~ 277 (349)
T 2www_A 219 VTKSDGDLIVPARRIQAEYVSALK---------LLRKRSQVWKPKVIRISARSGEG-ISEMWDKMKDFQ 277 (349)
T ss_dssp ECCCSGGGHHHHHHHHHHHHHHHT---------TCC-----CCCEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred EeeecCCCchhHHHHHHHHHHHHH---------hcCccccCCCceEEEEecCCCCC-HHHHHHHHHHHH
Confidence 999998643221 111111 001 0000 000112345688999999 999999988865
No 21
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.61 E-value=6e-16 Score=143.00 Aligned_cols=164 Identities=17% Similarity=0.227 Sum_probs=104.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHH
Q 019214 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (344)
Q Consensus 99 ~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 178 (344)
.++..|+++|.|||||||++|+|. |.++.+++.. +.+++..+.....
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~------g~~~~i~s~~-----------~~tT~~~~~~~~~---------------- 54 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLL------GTKVSIISPK-----------AGTTRMRVLGVKN---------------- 54 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHH------TSCCSCCCSS-----------SCCCCSCEEEEEE----------------
T ss_pred CCCCEEEEECCCCCcHHHHHHHHh------CCCccccCCC-----------CCceeeEEEEEEe----------------
Confidence 355789999999999999999999 9888877763 3333333221111
Q ss_pred HHhC-CCCEEEEcCCCCCcch--HHHHHHHHHh--hhhcCCcEEEEEEcCCcch--hHHHH-HHHHhccCCcCEEEeecC
Q 019214 179 FKKE-NCDLIIVDTSGRHKQE--AALFEEMRQV--SEATNPDLVIFVMDSSIGQ--AAFDQ-AQAFKQSVSVGAVIVTKM 250 (344)
Q Consensus 179 ~~~~-~~d~vlIDT~G~~~~~--~~~~~~l~~~--~~~~~~d~illvvda~~~~--~~~~~-~~~~~~~~~~~~lVinK~ 250 (344)
.. +++++|+||||..... ..+.+.+... .....+|.+++|+|++.+. ..... ...+.....+..+|+||+
T Consensus 55 --~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~ 132 (308)
T 3iev_A 55 --IPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKI 132 (308)
T ss_dssp --ETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECG
T ss_pred --cCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECc
Confidence 11 5788999999986533 2232333221 1233689999999998752 22333 444444334568899999
Q ss_pred CCC-CCh--hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCC
Q 019214 251 DGH-AKG--GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (344)
Q Consensus 251 D~~-~~~--~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~ 313 (344)
|.. ... ......+... +..+.+.+.+|+++|.| +++|++.+.+.++.
T Consensus 133 Dl~~~~~~~~~~~~~l~~~---------------~~~~~~i~~vSA~~g~g-v~~L~~~l~~~l~~ 182 (308)
T 3iev_A 133 DKIGPAKNVLPLIDEIHKK---------------HPELTEIVPISALKGAN-LDELVKTILKYLPE 182 (308)
T ss_dssp GGSSSGGGGHHHHHHHHHH---------------CTTCCCEEECBTTTTBS-HHHHHHHHHHHSCB
T ss_pred cCCCCHHHHHHHHHHHHHh---------------ccCCCeEEEEeCCCCCC-HHHHHHHHHHhCcc
Confidence 987 322 1122222210 11234456678999999 99999999998753
No 22
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.60 E-value=5.2e-16 Score=139.54 Aligned_cols=205 Identities=16% Similarity=0.147 Sum_probs=104.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchh-------------HHHHHhhcccCCcceeccC-CC
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA-------------FDQLKQNATKAKIPFYGSY-TE 165 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~-------------~~~l~~~~~~~~v~~~~~~-~~ 165 (344)
+..+++++|++||||||++++|+..++ .|++|++|+.|++.... .+.........+..+.... ..
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRL 91 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHH
Confidence 457788889999999999999999999 99999999999974321 0000000000000000000 00
Q ss_pred CCHHHHHHHHHHHHHhCCCCEEEEcCCCCCcchHH--HHHHHHHhhhhcCCcEEEEEEcCCcchhHHHHH-------HHH
Q 019214 166 SDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAA--LFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQA-------QAF 236 (344)
Q Consensus 166 ~~~~~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~--~~~~l~~~~~~~~~d~illvvda~~~~~~~~~~-------~~~ 236 (344)
......+.+.+..+. .++|++||||||....... +...+.. .... +.+++++|++...+..+.. ...
T Consensus 92 ~~~~~~l~~~l~~~~-~~~d~iiiDtpG~~~~~~~~~l~~~~~~--~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~ 167 (262)
T 1yrb_A 92 MEKFNEYLNKILRLE-KENDYVLIDTPGQMETFLFHEFGVRLME--NLPY-PLVVYISDPEILKKPNDYCFVRFFALLID 167 (262)
T ss_dssp HTTHHHHHHHHHHHH-HHCSEEEEECCSSHHHHHHSHHHHHHHH--TSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHh-hcCCEEEEeCCCccchhhhhhhHHHHHH--HHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHh
Confidence 001122223343433 3689999999998543211 0111111 1234 7889999986542222211 111
Q ss_pred hccCCcCEEEeecCCCCCChh--hHHHHHHHhCCCeE-EE------------ecCCCCCcCcCCChHHHHHHHhCCCChh
Q 019214 237 KQSVSVGAVIVTKMDGHAKGG--GALSAVAATKSPVI-FI------------GTGEHMDEFEVFDVKPFVSRLLGMGDWS 301 (344)
Q Consensus 237 ~~~~~~~~lVinK~D~~~~~~--~~~~~~~~~~~pv~-~~------------~~g~~~~~l~~~~~~~~is~~~g~g~i~ 301 (344)
.....+..+|+||+|...... .....+...+ ++. .+ +..+.+.++.+..+.+.+|+++|+| ++
T Consensus 168 ~~~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~g-i~ 245 (262)
T 1yrb_A 168 LRLGATTIPALNKVDLLSEEEKERHRKYFEDID-YLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREG-FE 245 (262)
T ss_dssp HHHTSCEEEEECCGGGCCHHHHHHHHHHHHCHH-HHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTT-HH
T ss_pred cccCCCeEEEEecccccccccHHHHHHHHhChH-HHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCccc-HH
Confidence 111234578999999865421 0111110000 000 00 0000000111112345678889999 99
Q ss_pred HHHHHHHhhC
Q 019214 302 GFMDKIHEVV 311 (344)
Q Consensus 302 ~l~~~i~~~~ 311 (344)
+|++.|.+.+
T Consensus 246 ~l~~~i~~~~ 255 (262)
T 1yrb_A 246 DLETLAYEHY 255 (262)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988765
No 23
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.60 E-value=7.7e-17 Score=156.52 Aligned_cols=177 Identities=17% Similarity=0.192 Sum_probs=94.1
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCC
Q 019214 77 QAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAK 156 (344)
Q Consensus 77 ~~l~~~l~~~l~~~~~~~~~~~~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~ 156 (344)
..+..++.+++.......... .+..|+++|+|||||||++|+|+ |.+.++++.-+ .++++.
T Consensus 202 ~~l~~~l~~~~~~~~~~~~~r--~~~kV~ivG~~nvGKSSLln~L~------~~~~a~v~~~~-----------gtT~d~ 262 (462)
T 3geh_A 202 ENIAAEISQLLATKDKGELLR--TGLKVAIVGRPNVGKSSLLNAWS------QSDRAIVTDLP-----------GTTRDV 262 (462)
T ss_dssp HHHHHHHHHHTTTHHHHHHHH--HCEEEEEEECTTSSHHHHHHHHH------HHHBSCCSCCT-----------TCCHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhc--CCCEEEEEcCCCCCHHHHHHHHh------CCCcccccCCC-----------CeeEEE
Confidence 445555555554322211111 23569999999999999999999 55554444311 111111
Q ss_pred cceeccCCCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHH---HHhhhhcCCcEEEEEEcCCcchh--HHH
Q 019214 157 IPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEM---RQVSEATNPDLVIFVMDSSIGQA--AFD 231 (344)
Q Consensus 157 v~~~~~~~~~~~~~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l---~~~~~~~~~d~illvvda~~~~~--~~~ 231 (344)
... .+...++++.++||||..... ...+.+ +.......+|.+++|+|++.+.. ...
T Consensus 263 ~~~------------------~i~~~g~~v~liDT~G~~~~~-~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~ 323 (462)
T 3geh_A 263 VES------------------QLVVGGIPVQVLDTAGIRETS-DQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQE 323 (462)
T ss_dssp HHH------------------EEEETTEEEEECC---------------------CCCCSCSEEEEEEETTTCSCHHHHH
T ss_pred EEE------------------EEEECCEEEEEEECCccccch-hHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHH
Confidence 000 001126678999999986532 222221 12223446899999999987532 222
Q ss_pred HHHHHhccCCcCEEEeecCCCCCChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 232 QAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 232 ~~~~~~~~~~~~~lVinK~D~~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
....+.. .+..+|+||+|....... .....+....+.+.+|+++|+| +++|++.|.+.+
T Consensus 324 i~~~l~~--~piivV~NK~Dl~~~~~~------------------~~~~~~~~~~~~i~iSAktg~G-i~eL~~~i~~~~ 382 (462)
T 3geh_A 324 IYEQVKH--RPLILVMNKIDLVEKQLI------------------TSLEYPENITQIVHTAAAQKQG-IDSLETAILEIV 382 (462)
T ss_dssp HHHHHTT--SCEEEEEECTTSSCGGGS------------------TTCCCCTTCCCEEEEBTTTTBS-HHHHHHHHHHHH
T ss_pred HHHhccC--CcEEEEEECCCCCcchhh------------------HHHHHhccCCcEEEEECCCCCC-HHHHHHHHHHHH
Confidence 3333332 356889999998654211 0111122223456788999999 999999988865
Q ss_pred C
Q 019214 312 P 312 (344)
Q Consensus 312 ~ 312 (344)
.
T Consensus 383 ~ 383 (462)
T 3geh_A 383 Q 383 (462)
T ss_dssp T
T ss_pred h
Confidence 3
No 24
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.58 E-value=4.1e-15 Score=136.88 Aligned_cols=160 Identities=21% Similarity=0.176 Sum_probs=101.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...|+++|.||||||||+|+|. |.++++++..+ .+++..+.....
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~------g~~~~ivs~~~-----------~tTr~~i~~i~~------------------ 51 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLL------GVKVAPISPRP-----------QTTRKRLRGILT------------------ 51 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------TSCCSCCCSSS-----------CCCCSCEEEEEE------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHh------CCceeeecCCC-----------CceeEEEEEEEE------------------
Confidence 3569999999999999999999 88888776622 333332221111
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHHHHHh--hhhcCCcEEEEEEcCCcchhH--HHHHHHHhcc--CCcCEEEeecCCCCC
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEEMRQV--SEATNPDLVIFVMDSSIGQAA--FDQAQAFKQS--VSVGAVIVTKMDGHA 254 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~l~~~--~~~~~~d~illvvda~~~~~~--~~~~~~~~~~--~~~~~lVinK~D~~~ 254 (344)
..+..++|+||||.......+.+.+... .....+|.+++|+|++.+... ......+... ..+..+|+||+|...
T Consensus 52 ~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~ 131 (301)
T 1wf3_A 52 EGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAK 131 (301)
T ss_dssp ETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCS
T ss_pred eCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCC
Confidence 1257789999999875433332223221 223478999999999865222 2222334332 345688999999975
Q ss_pred ChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 255 ~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
........+... ..+.+.+.+|+++|.| ++.|++.+.+.++
T Consensus 132 ~~~~~~~~~~~~----------------~~~~~~~~iSA~~g~g-v~~l~~~l~~~l~ 172 (301)
T 1wf3_A 132 YPEEAMKAYHEL----------------LPEAEPRMLSALDERQ-VAELKADLLALMP 172 (301)
T ss_dssp SHHHHHHHHHHT----------------STTSEEEECCTTCHHH-HHHHHHHHHTTCC
T ss_pred chHHHHHHHHHh----------------cCcCcEEEEeCCCCCC-HHHHHHHHHHhcc
Confidence 532123333321 1233456678889999 9999999988664
No 25
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.53 E-value=3.9e-14 Score=132.39 Aligned_cols=191 Identities=18% Similarity=0.171 Sum_probs=106.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchh-------HHHHHhhcccCCcceeccCCCCCH---H
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA-------FDQLKQNATKAKIPFYGSYTESDP---V 169 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~-------~~~l~~~~~~~~v~~~~~~~~~~~---~ 169 (344)
+..+++++|+|||||||+++.|+..+...+.+|.+++.|+..... ...+.......++.+......... .
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~t 133 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVA 133 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccchH
Confidence 457899999999999999999999988888999999998854211 111111111111111111111111 1
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHHHHHHHhccCCcCEEEeec
Q 019214 170 RIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTK 249 (344)
Q Consensus 170 ~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~~~~~~~~~~~~~~lVinK 249 (344)
....+.+..+...+++++||||||+....... ...+|.+++|+|++.+.+.......... .+..+|+||
T Consensus 134 r~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v---------~~~~d~vl~v~d~~~~~~~~~i~~~i~~--~~~ivvlNK 202 (337)
T 2qm8_A 134 AKTRETMLLCEAAGFDVILVETVGVGQSETAV---------ADLTDFFLVLMLPGAGDELQGIKKGIFE--LADMIAVNK 202 (337)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSSSSCHHHH---------HTTSSEEEEEECSCC------CCTTHHH--HCSEEEEEC
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCcchhhH---------HhhCCEEEEEEcCCCcccHHHHHHHHhc--cccEEEEEc
Confidence 22233333344569999999999998654221 1357999999998754321101000111 135778899
Q ss_pred CCCCCChh---hHHHHHHH-hCCCeEEEecCCCCCcC--cCCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 250 MDGHAKGG---GALSAVAA-TKSPVIFIGTGEHMDEF--EVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 250 ~D~~~~~~---~~~~~~~~-~~~pv~~~~~g~~~~~l--~~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
+|...... .....+.. .. .+... ....+.+++|++.|.| +++|++.|.+..+
T Consensus 203 ~Dl~~~~~~s~~~~~~l~~a~~----------l~~~~~~~~~~~vl~~Sal~g~g-i~~L~~~I~~~~~ 260 (337)
T 2qm8_A 203 ADDGDGERRASAAASEYRAALH----------ILTPPSATWTPPVVTISGLHGKG-LDSLWSRIEDHRS 260 (337)
T ss_dssp CSTTCCHHHHHHHHHHHHHHHT----------TBCCSBTTBCCCEEEEBTTTTBS-HHHHHHHHHHHHH
T ss_pred hhccCchhHHHHHHHHHHHHHH----------hccccccCCCCCEEEEeCCCCCC-HHHHHHHHHHHHH
Confidence 99753221 11111111 00 00000 0012345588889999 9999998888653
No 26
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.51 E-value=2.8e-16 Score=153.25 Aligned_cols=153 Identities=22% Similarity=0.202 Sum_probs=89.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
..|+++|.|||||||++|+|+ |.+.++++. .++++++........
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~------~~~~a~vs~-----------~~gTT~d~~~~~i~~------------------ 288 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLL------NEDRAIVTD-----------IPGTTRDVISEEIVI------------------ 288 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHH------HHTBCCCCC-----------SSCCSSCSCCEEEEE------------------
T ss_pred CEEEEECcCCCcHHHHHHHHH------CCCCCccCC-----------CCCeeeeeEEEEEec------------------
Confidence 569999999999999999999 655555555 334444332211111
Q ss_pred CCCCEEEEcCCCCC-cchHHHHHH---HHHhhhhcCCcEEEEEEcCCcch--hHHHHHHHHhccCCcCEEEeecCCCCCC
Q 019214 182 ENCDLIIVDTSGRH-KQEAALFEE---MRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQSVSVGAVIVTKMDGHAK 255 (344)
Q Consensus 182 ~~~d~vlIDT~G~~-~~~~~~~~~---l~~~~~~~~~d~illvvda~~~~--~~~~~~~~~~~~~~~~~lVinK~D~~~~ 255 (344)
.+..+.|+||||.. ..... .+. -+.......+|.+++|+|++.+. +..+....+ . ..+..+|+||+|+...
T Consensus 289 ~g~~~~l~DTaG~~~~~~~~-ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l-~-~~piivV~NK~DL~~~ 365 (482)
T 1xzp_A 289 RGILFRIVDTAGVRSETNDL-VERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI-K-NKRYLVVINKVDVVEK 365 (482)
T ss_dssp TTEEEEEEESSCCCSSCCTT-CCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH-T-TSSEEEEEEECSSCCC
T ss_pred CCeEEEEEECCCccccchhh-HHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh-c-CCCEEEEEECcccccc
Confidence 25678999999987 43210 000 00112234589999999997652 222333333 2 2355889999998643
Q ss_pred hh-hHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 256 GG-GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 256 ~~-~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
.. ..+......+. +.+.+|+++|+| +++|++.|.+.+
T Consensus 366 ~~~~~~~~~~~~~~------------------~~i~iSAktg~G-i~eL~~~l~~~~ 403 (482)
T 1xzp_A 366 INEEEIKNKLGTDR------------------HMVKISALKGEG-LEKLEESIYRET 403 (482)
T ss_dssp CCHHHHHHHHTCST------------------TEEEEEGGGTCC-HHHHHHHHHHHT
T ss_pred cCHHHHHHHhcCCC------------------cEEEEECCCCCC-HHHHHHHHHHHH
Confidence 11 11111111111 234567777777 777777777654
No 27
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.50 E-value=4.9e-14 Score=129.68 Aligned_cols=164 Identities=21% Similarity=0.213 Sum_probs=98.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
+...|+++|+||||||||+++|. |.++.+++..+ .+++.....+. .
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~------g~~~~i~s~~~-----------~tTr~~~~gi~--~--------------- 52 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLL------GQKISITSRKA-----------QTTRHRIVGIH--T--------------- 52 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHH------TCSEEECCCCS-----------SCCSSCEEEEE--E---------------
T ss_pred cCCEEEEECCCCCCHHHHHHHHH------CCCccccCCCC-----------CcceeeEEEEE--E---------------
Confidence 34579999999999999999999 98888776522 22322211111 1
Q ss_pred HhCCCCEEEEcCCCCC-cchHHHHHHHHHh--hhhcCCcEEEEEEcCCcc-hhHHHHHHHHhccCCcCEEEeecCCCCCC
Q 019214 180 KKENCDLIIVDTSGRH-KQEAALFEEMRQV--SEATNPDLVIFVMDSSIG-QAAFDQAQAFKQSVSVGAVIVTKMDGHAK 255 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~-~~~~~~~~~l~~~--~~~~~~d~illvvda~~~-~~~~~~~~~~~~~~~~~~lVinK~D~~~~ 255 (344)
..+..+.++||||.. .....+...+... .....+|.+++|+|++.- .........+.....|..+|+||+|....
T Consensus 53 -~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~ 131 (301)
T 1ega_A 53 -EGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQE 131 (301)
T ss_dssp -ETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTCCCHHHHHHHHHHHSSSSCEEEEEESTTTCCC
T ss_pred -ECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCCCCHHHHHHHHHHHhcCCCEEEEEECcccCcc
Confidence 115678999999987 3322222223211 122357899999998652 11122333444333456888999999762
Q ss_pred hhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 256 ~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
.......+.... +. ..+.+.+++|+..|.| ++.|++.+.+.++
T Consensus 132 ~~~~~~~l~~l~---------~~----~~~~~~i~iSA~~g~~-v~~l~~~i~~~l~ 174 (301)
T 1ega_A 132 KADLLPHLQFLA---------SQ----MNFLDIVPISAETGLN-VDTIAAIVRKHLP 174 (301)
T ss_dssp HHHHHHHHHHHH---------TT----SCCSEEEECCTTTTTT-HHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHH---------Hh----cCcCceEEEECCCCCC-HHHHHHHHHHhCC
Confidence 222222222110 11 1122345678889999 9999999998765
No 28
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.49 E-value=9.3e-15 Score=127.82 Aligned_cols=177 Identities=12% Similarity=0.164 Sum_probs=105.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCC---CCHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTE---SDPVRIAVEGV 176 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~---~~~~~~~~~~l 176 (344)
+.++++++|++||||||++++|+..+... +++++++.|+........+.. .+.++.....+ ........+.+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~~~~~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGDVVSKADYERVRR----FGIKAEAISTGKECHLDAHMIYHRL 103 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECSCCCHHHHHHHHT----TTCEEEECCCTTCSSCCHHHHHTTG
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecCCCCchhHHHHHh----CCCcEEEecCCceeecccHHHHHHH
Confidence 34689999999999999999999887654 789999999875433333332 12221111110 01111112222
Q ss_pred HHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHHH-HHHHhccCCcCEEEeecCCCCCC
Q 019214 177 ETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ-AQAFKQSVSVGAVIVTKMDGHAK 255 (344)
Q Consensus 177 ~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~~-~~~~~~~~~~~~lVinK~D~~~~ 255 (344)
. ...++|+++|||+|....... . ...++.+++|+|++.+...... ...+ ..+..+|+||+|....
T Consensus 104 ~--~~~~~d~iiidt~G~~~~~~~--------~-~~~~~~~i~vvd~~~~~~~~~~~~~~~---~~~~iiv~NK~Dl~~~ 169 (221)
T 2wsm_A 104 K--KFSDCDLLLIENVGNLICPVD--------F-DLGENYRVVMVSVTEGDDVVEKHPEIF---RVADLIVINKVALAEA 169 (221)
T ss_dssp G--GGTTCSEEEEEEEEBSSGGGG--------C-CCSCSEEEEEEEGGGCTTHHHHCHHHH---HTCSEEEEECGGGHHH
T ss_pred H--hcCCCCEEEEeCCCCCCCCch--------h-ccccCcEEEEEeCCCcchhhhhhhhhh---hcCCEEEEecccCCcc
Confidence 2 234799999999995322110 0 1246789999998876432211 1121 1346889999998532
Q ss_pred ----hhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 256 ----GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 256 ----~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
.......+...+ +..+.+.+|+.+|+| ++++++.|.+.+.
T Consensus 170 ~~~~~~~~~~~~~~~~----------------~~~~i~~~Sa~~g~g-i~~l~~~l~~~~~ 213 (221)
T 2wsm_A 170 VGADVEKMKADAKLIN----------------PRAKIIEMDLKTGKG-FEEWIDFLRGILN 213 (221)
T ss_dssp HTCCHHHHHHHHHHHC----------------TTSEEEECBTTTTBT-HHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHhC----------------CCCeEEEeecCCCCC-HHHHHHHHHHHHH
Confidence 222223332211 122345577889999 9999999987654
No 29
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.49 E-value=2.5e-14 Score=138.31 Aligned_cols=157 Identities=21% Similarity=0.312 Sum_probs=86.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
..|+++|+|||||||++|+|+ |.+.++++. .++.+++........
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~------~~~~~~v~~-----------~~g~T~d~~~~~~~~------------------ 48 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIA------GERISIVED-----------TPGVTRDRIYSSAEW------------------ 48 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHE------EEECC----------------------CEEEECTT------------------
T ss_pred CEEEEECCCCCCHHHHHHHHh------CCCceeecC-----------CCCCccceEEEEEEE------------------
Confidence 469999999999999999999 877777665 334444333211111
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHHHHh--hhhcCCcEEEEEEcCCcchhH--HHHHHHHhccCCcCEEEeecCCCCCChh
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEMRQV--SEATNPDLVIFVMDSSIGQAA--FDQAQAFKQSVSVGAVIVTKMDGHAKGG 257 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l~~~--~~~~~~d~illvvda~~~~~~--~~~~~~~~~~~~~~~lVinK~D~~~~~~ 257 (344)
.+..+.++||||.......+.+.++.. .....+|.+++|+|++.+... ......+.....+..+|+||+|......
T Consensus 49 ~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~ 128 (436)
T 2hjg_A 49 LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA 128 (436)
T ss_dssp CSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-----
T ss_pred CCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchh
Confidence 256789999999863332233333322 223468999999999876322 2333444444456688999999864310
Q ss_pred hHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 258 GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 258 ~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
.. .....+ .+.+.+.+|+.+|.| +++|++++.+.++
T Consensus 129 ~~-----------------~~~~~l-g~~~~~~iSA~~g~g-v~~L~~~i~~~l~ 164 (436)
T 2hjg_A 129 NI-----------------YDFYSL-GFGEPYPISGTHGLG-LGDLLDAVAEHFK 164 (436)
T ss_dssp CC-----------------CSSGGG-SSCCCEECBTTTTBT-HHHHHHHHHHTGG
T ss_pred hH-----------------HHHHHc-CCCCeEEEeCcCCCC-hHHHHHHHHHhcC
Confidence 00 000011 112346689999999 9999999988764
No 30
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.49 E-value=1.2e-13 Score=124.22 Aligned_cols=142 Identities=18% Similarity=0.041 Sum_probs=83.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
+.|+++|.|||||||++++|. |.+.. +.. .+..+......... .
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~------g~~~~-v~~-----------~pg~Tv~~~~~~~~------------------~ 45 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALT------NANQR-VGN-----------WPGVTVEKKTGEFL------------------L 45 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHH------TTSEE-EEE-----------CTTSSSEEEEEEEE------------------E
T ss_pred CEEEEECCCCCCHHHHHHHHH------CCCCC-ccC-----------CCCceEEEEEEEEE------------------E
Confidence 468999999999999999998 76633 222 11111111100000 1
Q ss_pred CCCCEEEEcCCCCCcchH-----HHHHHH-HHhhhhcCCcEEEEEEcCCcchhHHHHHHHHhccCCcCEEEeecCCCCCC
Q 019214 182 ENCDLIIVDTSGRHKQEA-----ALFEEM-RQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAK 255 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~-----~~~~~l-~~~~~~~~~d~illvvda~~~~~~~~~~~~~~~~~~~~~lVinK~D~~~~ 255 (344)
.+..+.++||||...... ...+.+ +.......+|.+++|+|++...........+.+...+..+|+||+|....
T Consensus 46 ~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~ 125 (256)
T 3iby_A 46 GEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTSQLFELGKPVVVALNMMDIAEH 125 (256)
T ss_dssp TTEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHHHHHHTTSCSCEEEEEECHHHHHH
T ss_pred CCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHHHHHHHHcCCCEEEEEEChhcCCc
Confidence 155789999999865432 111222 22232357999999999987544444444555444566889999998533
Q ss_pred hh---hHHHHHHHhCCCeEEEe--cCCCC
Q 019214 256 GG---GALSAVAATKSPVIFIG--TGEHM 279 (344)
Q Consensus 256 ~~---~~~~~~~~~~~pv~~~~--~g~~~ 279 (344)
.+ .........+.|+..++ .|+++
T Consensus 126 ~~~~~~~~~l~~~lg~~vi~~SA~~g~gi 154 (256)
T 3iby_A 126 RGISIDTEKLESLLGCSVIPIQAHKNIGI 154 (256)
T ss_dssp TTCEECHHHHHHHHCSCEEECBGGGTBSH
T ss_pred CCcHHHHHHHHHHcCCCEEEEECCCCCCH
Confidence 21 12233444677776665 44443
No 31
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=99.48 E-value=1.2e-12 Score=112.92 Aligned_cols=152 Identities=23% Similarity=0.185 Sum_probs=94.9
Q ss_pred eEEEEE-cCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 102 SVIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 102 ~ii~iv-G~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
++|+|+ +.+||||||++.+||..+++.|++|++||+|++...... +. ....++++..... ..+.+.+..+.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~~-~~--~~~~~~~~~~~~~-----~~l~~~l~~l~ 73 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNW-SK--AGKAAFDVFTAAS-----EKDVYGIRKDL 73 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH-HT--TSCCSSEEEECCS-----HHHHHTHHHHT
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHHH-Hh--cCCCCCcEEecCc-----HHHHHHHHHhc
Confidence 578888 556999999999999999999999999999987654321 11 1223344433221 33344455554
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch-hHHHHHHHHhc------cCCcCEEEeecCCCC
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ-AAFDQAQAFKQ------SVSVGAVIVTKMDGH 253 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~-~~~~~~~~~~~------~~~~~~lVinK~D~~ 253 (344)
..||+|||||||..... .. .. ...+|.+++|+.++... ........+.. ..++ ++|+|++|..
T Consensus 74 -~~yD~viiD~~~~~~~~--~~----~~--l~~ad~viiv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~vv~N~~~~~ 143 (206)
T 4dzz_A 74 -ADYDFAIVDGAGSLSVI--TS----AA--VMVSDLVIIPVTPSPLDFSAAGSVVTVLEAQAYSRKVEA-RFLITRKIEM 143 (206)
T ss_dssp -TTSSEEEEECCSSSSHH--HH----HH--HHHCSEEEEEECSCTTTHHHHHHHHHHHTTSCGGGCCEE-EEEECSBCTT
T ss_pred -CCCCEEEEECCCCCCHH--HH----HH--HHHCCEEEEEecCCHHHHHHHHHHHHHHHHHHhCCCCcE-EEEEeccCCC
Confidence 47999999999876321 11 11 12378999999987543 22222333322 2233 8999999965
Q ss_pred CCh-hhHHHHHHHhCCCeE
Q 019214 254 AKG-GGALSAVAATKSPVI 271 (344)
Q Consensus 254 ~~~-~~~~~~~~~~~~pv~ 271 (344)
... ....+.+...+.|+.
T Consensus 144 ~~~~~~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 144 ATMLNVLKESIKDTGVKAF 162 (206)
T ss_dssp EEEEHHHHHHHHHHTCCBC
T ss_pred chHHHHHHHHHHHcCCcee
Confidence 432 344555665665554
No 32
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.46 E-value=3.8e-14 Score=123.86 Aligned_cols=168 Identities=17% Similarity=0.121 Sum_probs=95.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCc-cEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWK-PALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~-v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 178 (344)
....|+++|.+||||||++++|. |.+ +..++..+ .++.. ........
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~------~~~~~~~~~~~~-----------~~t~~-~~~~~~~~-------------- 75 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLC------NQKRLAFASKTP-----------GRTQH-INYFSVGP-------------- 75 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHT------TCSSSSCTTCCC-----------CSCCC-EEEEEESC--------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHh------CCCcceeecCCC-----------Ccccc-eEEEEecC--------------
Confidence 34679999999999999999998 654 44433311 11111 11111110
Q ss_pred HHhCCCCEEEEcCCCCCcc------hHHHHHHHHHhh-hhcCCcEEEEEEcCCcc--hhHHHHHHHHhccCCcCEEEeec
Q 019214 179 FKKENCDLIIVDTSGRHKQ------EAALFEEMRQVS-EATNPDLVIFVMDSSIG--QAAFDQAQAFKQSVSVGAVIVTK 249 (344)
Q Consensus 179 ~~~~~~d~vlIDT~G~~~~------~~~~~~~l~~~~-~~~~~d~illvvda~~~--~~~~~~~~~~~~~~~~~~lVinK 249 (344)
..+..+.|+||||.... ...+...+.... ....+|.+++|+|++.+ .........+.....+..+|+||
T Consensus 76 --~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK 153 (223)
T 4dhe_A 76 --AAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTK 153 (223)
T ss_dssp --TTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEEC
T ss_pred --CCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEec
Confidence 12578999999997543 111111122222 22346889999999865 22233444444444456889999
Q ss_pred CCCCCChhh--HHHHHHHhCCCeEEEecCCCCCcC-----cCCChHHHHHHHhCCCChhHHHHHHHhhCCCC
Q 019214 250 MDGHAKGGG--ALSAVAATKSPVIFIGTGEHMDEF-----EVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMD 314 (344)
Q Consensus 250 ~D~~~~~~~--~~~~~~~~~~pv~~~~~g~~~~~l-----~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~~ 314 (344)
+|+...... ....+.. .+..+ ....+.+.+|+++|+| +++|++.|.+.++..
T Consensus 154 ~Dl~~~~~~~~~~~~~~~------------~l~~~~~~~~~~~~~~~~~SA~~g~g-v~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 154 CDKLTRQESINALRATQK------------SLDAYRDAGYAGKLTVQLFSALKRTG-LDDAHALIESWLRPA 212 (223)
T ss_dssp GGGSCHHHHHHHHHHHHH------------HHHHHHHHTCCSCEEEEEEBTTTTBS-HHHHHHHHHHHHC--
T ss_pred cccCChhhHHHHHHHHHH------------HHHhhhhcccCCCCeEEEeecCCCcC-HHHHHHHHHHhcCcc
Confidence 998754221 1111110 00000 1222445678889999 999999999887654
No 33
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.46 E-value=1.5e-13 Score=124.82 Aligned_cols=137 Identities=21% Similarity=0.189 Sum_probs=80.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
..|+++|.+||||||++|+|. |.+. .+.. .+..+..... .... .
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~------g~~~-~v~~-----------~~g~t~~~~~--~~~~----------------~ 47 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLT------GSRQ-RVGN-----------WAGVTVERKE--GQFS----------------T 47 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHH------TTCE-EEEE-----------CTTSSSEEEE--EEEE----------------C
T ss_pred cEEEEECCCCCCHHHHHHHHh------CCCc-ccCC-----------CCCeeEEEEE--EEEE----------------e
Confidence 579999999999999999999 7663 3333 1111111111 0000 1
Q ss_pred CCCCEEEEcCCCCCcch-----HHHHHHH-HHhhhhcCCcEEEEEEcCCcchhHHHHHHHHhccCCcCEEEeecCCCCCC
Q 019214 182 ENCDLIIVDTSGRHKQE-----AALFEEM-RQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAK 255 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~-----~~~~~~l-~~~~~~~~~d~illvvda~~~~~~~~~~~~~~~~~~~~~lVinK~D~~~~ 255 (344)
.+..+.++||||..... ....+.+ +.......+|.+++|+|++...........+.+...+..+|+||+|....
T Consensus 48 ~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~ 127 (274)
T 3i8s_A 48 TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEK 127 (274)
T ss_dssp SSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHHHHHHHHHHTCCEEEEEECHHHHHH
T ss_pred CCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHHHHHHHHhcCCCEEEEEECccchhh
Confidence 25678999999975432 1111122 22223357899999999987544444444444434456889999997532
Q ss_pred hh---hHHHHHHHhCCCeEEEe
Q 019214 256 GG---GALSAVAATKSPVIFIG 274 (344)
Q Consensus 256 ~~---~~~~~~~~~~~pv~~~~ 274 (344)
.+ .........+.|+..++
T Consensus 128 ~~~~~~~~~l~~~lg~~~i~~S 149 (274)
T 3i8s_A 128 QNIRIEIDALSARLGCPVIPLV 149 (274)
T ss_dssp TTEEECHHHHHHHHTSCEEECC
T ss_pred hhHHHHHHHHHHhcCCCEEEEE
Confidence 21 12233445677776665
No 34
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.45 E-value=6.1e-14 Score=135.63 Aligned_cols=163 Identities=18% Similarity=0.219 Sum_probs=95.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
....|+++|.|||||||++++|. |.....++. .+.+++.........
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~------~~~~~~~~~-----------~~gtT~d~~~~~~~~---------------- 220 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAML------GEERVIVSN-----------VAGTTRDAVDTSFTY---------------- 220 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHH------TSTTEEEC--------------------CCEEEEE----------------
T ss_pred cCcEEEEEcCCCCCHHHHHHHHh------CCCceeecC-----------CCCceeeeeEEEEEE----------------
Confidence 45789999999999999999999 877776665 333443332211111
Q ss_pred HhCCCCEEEEcCCCCCcchH-----HHHHHHHHhhhhcCCcEEEEEEcCCcchh--HHHHHHHHhccCCcCEEEeecCCC
Q 019214 180 KKENCDLIIVDTSGRHKQEA-----ALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAFKQSVSVGAVIVTKMDG 252 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~~-----~~~~~l~~~~~~~~~d~illvvda~~~~~--~~~~~~~~~~~~~~~~lVinK~D~ 252 (344)
.+..+.|+||||...... +....++.+.....+|.+++|+|++.+.. .............+..+|+||+|+
T Consensus 221 --~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl 298 (436)
T 2hjg_A 221 --NQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDA 298 (436)
T ss_dssp --TTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGG
T ss_pred --CCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccC
Confidence 145689999999742211 11222333333445899999999987632 223333333334456888999998
Q ss_pred CCChhh----HHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 253 HAKGGG----ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 253 ~~~~~~----~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
...... ....+.. .+.. ....+.+++|+++|.| ++++++.+.+.+
T Consensus 299 ~~~~~~~~~~~~~~~~~------------~l~~-~~~~~~~~~SA~tg~~-v~~l~~~i~~~~ 347 (436)
T 2hjg_A 299 VDKDESTMKEFEENIRD------------HFQF-LDYAPILFMSALTKKR-IHTLMPAIIKAS 347 (436)
T ss_dssp SCCCTTHHHHHHHHHHH------------HCGG-GTTSCEEECCTTTCTT-GGGHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHH------------hccc-CCCCCEEEEecccCCC-HHHHHHHHHHHH
Confidence 654221 1122211 0110 1123456788889999 999988887765
No 35
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=99.45 E-value=2.4e-12 Score=118.54 Aligned_cols=164 Identities=15% Similarity=0.115 Sum_probs=96.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhH-----------HHHHh------------h--cc
Q 019214 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAF-----------DQLKQ------------N--AT 153 (344)
Q Consensus 99 ~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~-----------~~l~~------------~--~~ 153 (344)
.+.++|+|+|++||||||++.+||..|++.|++|++||+|++..... +.+.. . ..
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~l~~~~~~~l~d~l~~~~~~~~~~~~~~~i~~~ 118 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDSTFTLTGSLVPTVIDVLKDVDFHPEELRPEDFVFEG 118 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCTTHHHHTSCCCCHHHHHHHTTSCGGGCCHHHHCEEC
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCCCHHHHhCccCCCCHHHHHhhccccccCCCHHHhhccC
Confidence 35688999999999999999999999999999999999999653221 11110 0 01
Q ss_pred cCCcceeccCC---C--C-CH-HHHHHHHHHHH-HhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCc
Q 019214 154 KAKIPFYGSYT---E--S-DP-VRIAVEGVETF-KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSI 225 (344)
Q Consensus 154 ~~~v~~~~~~~---~--~-~~-~~~~~~~l~~~-~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~ 225 (344)
..++.+..... . . .. .......++.+ ...+||+|||||||....... ......+|.+++|+.+..
T Consensus 119 ~~~l~vlp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~yD~ViiD~p~~~~~~~~-------~~~l~~aD~viiv~~~~~ 191 (307)
T 3end_A 119 FNGVMCVEAGGPPAGTGCGGYVVGQTVKLLKQHHLLDDTDVVIFDVLGDVVCGGF-------AAPLQHADQAVVVTANDF 191 (307)
T ss_dssp GGGCEEEECCCCCSSSSCTTHHHHHHHHHHHHTTTTSSCSEEEEEECCSSCCGGG-------GGGGGTCSEEEEEECSSH
T ss_pred CCCceEEECCCcccccccchhhhHHHHHHHHhhhccccCCEEEEeCCCccchHHH-------HHHHHHCCEEEEEecCcH
Confidence 12333331111 0 0 11 11112233332 235799999999886532210 112345899999998875
Q ss_pred c--hhHHHHHHHHhc-----cCCcCEEEeecCCCCCChhhHHHHHHHhCCCeEE
Q 019214 226 G--QAAFDQAQAFKQ-----SVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIF 272 (344)
Q Consensus 226 ~--~~~~~~~~~~~~-----~~~~~~lVinK~D~~~~~~~~~~~~~~~~~pv~~ 272 (344)
. .........+.. ..++.++|+|+++.. ..........+.|+..
T Consensus 192 ~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~---~~~~~~~~~~g~~v~~ 242 (307)
T 3end_A 192 DSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT---DEVDRFCKETNFRRLA 242 (307)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC---HHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH---HHHHHHHHHcCCCcee
Confidence 3 222222333322 233457999999853 2334455567888775
No 36
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.44 E-value=6.8e-14 Score=135.44 Aligned_cols=157 Identities=18% Similarity=0.234 Sum_probs=87.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
..|+++|.|||||||++|+|+ |.+.++++. .++.+++........
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~------~~~~~~v~~-----------~~g~T~d~~~~~~~~------------------ 46 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLV------KKKKAIVED-----------EEGVTRDPVQDTVEW------------------ 46 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHH------C-------------------------CCSEEEEEE------------------
T ss_pred CEEEEECCCCCCHHHHHHHHh------CCCCceecC-----------CCCCccceeeEEEEE------------------
Confidence 369999999999999999999 888777765 444444433221111
Q ss_pred CCCCEEEEcCCCCCcch-HHHHHHHH--HhhhhcCCcEEEEEEcCCcchhH--HHHHHHHhccCCcCEEEeecCCCCCCh
Q 019214 182 ENCDLIIVDTSGRHKQE-AALFEEMR--QVSEATNPDLVIFVMDSSIGQAA--FDQAQAFKQSVSVGAVIVTKMDGHAKG 256 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~-~~~~~~l~--~~~~~~~~d~illvvda~~~~~~--~~~~~~~~~~~~~~~lVinK~D~~~~~ 256 (344)
.+..+.++||||..... ..+.+.++ .......+|.+++|+|++.+... ......+.....+..+|+||+|.....
T Consensus 47 ~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~~ 126 (439)
T 1mky_A 47 YGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREF 126 (439)
T ss_dssp TTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHH
T ss_pred CCeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCcccc
Confidence 15567899999986421 11112222 22334579999999999875322 223333333334568899999975321
Q ss_pred hhHH-HHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 257 GGAL-SAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 257 ~~~~-~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
.... ......+ +.+.+.+|+.+|.| +++|++.+.+.+
T Consensus 127 ~~~~~~~~~~lg-----------------~~~~~~iSA~~g~g-v~~L~~~i~~~l 164 (439)
T 1mky_A 127 EREVKPELYSLG-----------------FGEPIPVSAEHNIN-LDTMLETIIKKL 164 (439)
T ss_dssp HHHTHHHHGGGS-----------------SCSCEECBTTTTBS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-----------------CCCEEEEeccCCCC-HHHHHHHHHHhc
Confidence 1111 1111111 11234578899999 999999987655
No 37
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.44 E-value=2.1e-13 Score=116.08 Aligned_cols=161 Identities=20% Similarity=0.222 Sum_probs=90.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
....|+++|.+||||||++++|. +.+...+.. ....+. ......
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~------~~~~~~~~~-----------~~~~t~-~~~~~~------------------ 65 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALF------NRKIAFVSK-----------TPGKTR-SINFYL------------------ 65 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHH------TSCCSCCCS-----------SCCCCC-CEEEEE------------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHH------cCccccccC-----------CCCCcc-CeEEEE------------------
Confidence 34579999999999999999998 665332222 111111 111111
Q ss_pred HhCCCCEEEEcCCCCCcch-----HHHHHHH-HHhh-hhcCCcEEEEEEcCCcch--hHHHHHHHHhccCCcCEEEeecC
Q 019214 180 KKENCDLIIVDTSGRHKQE-----AALFEEM-RQVS-EATNPDLVIFVMDSSIGQ--AAFDQAQAFKQSVSVGAVIVTKM 250 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~-----~~~~~~l-~~~~-~~~~~d~illvvda~~~~--~~~~~~~~~~~~~~~~~lVinK~ 250 (344)
.+..+.++||||..... ......+ .... ....+|.+++|+|++... ........+.....+..+|+||+
T Consensus 66 --~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~ 143 (195)
T 3pqc_A 66 --VNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKM 143 (195)
T ss_dssp --ETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECG
T ss_pred --ECCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECh
Confidence 14568899999964221 1111122 1222 223458999999987652 22233333333334568889999
Q ss_pred CCCCChh--hHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 251 DGHAKGG--GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 251 D~~~~~~--~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
|...... ...+..... .... ...+.+.+|+++|+| +++++++|.+.+.
T Consensus 144 Dl~~~~~~~~~~~~~~~~------------~~~~-~~~~~~~~Sa~~~~g-v~~l~~~l~~~l~ 193 (195)
T 3pqc_A 144 DKVKMSERAKKLEEHRKV------------FSKY-GEYTIIPTSSVTGEG-ISELLDLISTLLK 193 (195)
T ss_dssp GGSCGGGHHHHHHHHHHH------------HHSS-CCSCEEECCTTTCTT-HHHHHHHHHHHHC
T ss_pred hcCChHHHHHHHHHHHHH------------Hhhc-CCCceEEEecCCCCC-HHHHHHHHHHHhh
Confidence 9864321 111222110 0000 112345578889999 9999999988764
No 38
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=99.44 E-value=3.7e-12 Score=116.23 Aligned_cols=148 Identities=19% Similarity=0.230 Sum_probs=93.3
Q ss_pred CCeEEEEEcC-CCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHH------------HHhhc---------ccCCc
Q 019214 100 KPSVIMFVGL-QGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQ------------LKQNA---------TKAKI 157 (344)
Q Consensus 100 ~~~ii~ivG~-~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~------------l~~~~---------~~~~v 157 (344)
++++|+|+|+ +|+||||++.+||..+++.|++|++||+|++++..... +.... ...++
T Consensus 91 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~l 170 (286)
T 3la6_A 91 QNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSEILIGQGDITTAAKPTSIAKF 170 (286)
T ss_dssp TCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTTCCHHHHHTCCCTTCHHHHHHTSSCTTTTCEECSSTTE
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHhCCCCCCCHHHHccCCCCHHHheeccCCCCE
Confidence 4478888865 59999999999999999999999999999987543221 11110 11233
Q ss_pred ceeccCC-CCCHHHH-----HHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc--hhH
Q 019214 158 PFYGSYT-ESDPVRI-----AVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QAA 229 (344)
Q Consensus 158 ~~~~~~~-~~~~~~~-----~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~--~~~ 229 (344)
.+..... ..++.+. +.+.+..++ ..||+||||||+........ .-...+|.+++|+.+... ...
T Consensus 171 ~vl~~g~~~~~~~ell~~~~l~~ll~~l~-~~yD~VIIDtpp~~~~~da~-------~l~~~aD~vllVv~~~~~~~~~~ 242 (286)
T 3la6_A 171 DLIPRGQVPPNPSELLMSERFAELVNWAS-KNYDLVLIDTPPILAVTDAA-------IVGRHVGTTLMVARYAVNTLKEV 242 (286)
T ss_dssp EEECCCSCCSCHHHHHTSHHHHHHHHHHH-HHCSEEEEECCCTTTCTHHH-------HHTTTCSEEEEEEETTTSBHHHH
T ss_pred EEEeCCCCCCCHHHHhchHHHHHHHHHHH-hCCCEEEEcCCCCcchHHHH-------HHHHHCCeEEEEEeCCCCcHHHH
Confidence 3333222 2344433 233444443 47999999999976543211 112347999999998754 222
Q ss_pred HHHHHHHhc-cCCcCEEEeecCCCCCC
Q 019214 230 FDQAQAFKQ-SVSVGAVIVTKMDGHAK 255 (344)
Q Consensus 230 ~~~~~~~~~-~~~~~~lVinK~D~~~~ 255 (344)
......+.. ..++.++|+|++|....
T Consensus 243 ~~~~~~l~~~g~~~~GvVlN~v~~~~~ 269 (286)
T 3la6_A 243 ETSLSRFEQNGIPVKGVILNSIFRRAS 269 (286)
T ss_dssp HHHHHHHHHTTCCCCEEEEEEECCCCC
T ss_pred HHHHHHHHhCCCCEEEEEEcCcccccc
Confidence 333344432 24678999999986543
No 39
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=99.43 E-value=1.8e-12 Score=114.95 Aligned_cols=164 Identities=15% Similarity=0.091 Sum_probs=95.8
Q ss_pred CCeEEEEEc-CCCCCHHHHHHHHHHHHHHc-CCccEEeecCcCcchhH-------------HHHHhh-------------
Q 019214 100 KPSVIMFVG-LQGSGKTTTCTKYAYYHQKK-GWKPALVCADTFRAGAF-------------DQLKQN------------- 151 (344)
Q Consensus 100 ~~~ii~ivG-~~GvGKTTl~~~La~~l~~~-g~~v~iv~~D~~~~~~~-------------~~l~~~------------- 151 (344)
+.++|+|+| .+|+||||++.+||..+++. |++|++||+|++.+... +.+...
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 82 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLPFGDLDMYLSGNTHSQDLADISNASDRLDKSLLDTMVQ 82 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTTTCCGGGGTCSSCCSCCHHHHHHTGGGCCHHHHHHHSE
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCCCCCHHHHhCCCCCCCCHHHHHhhHhhhhHHHHHHHhE
Confidence 457888885 55999999999999999998 99999999998733221 111110
Q ss_pred cccCCcceeccCCCCCH-----HHHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc
Q 019214 152 ATKAKIPFYGSYTESDP-----VRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG 226 (344)
Q Consensus 152 ~~~~~v~~~~~~~~~~~-----~~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~ 226 (344)
....++.+......... ...+.+.+..+. ..||+||||||+....... .. ...+|.+++|+.++..
T Consensus 83 ~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~p~~~~~~~~------~~--l~~ad~viiv~~~~~~ 153 (245)
T 3ea0_A 83 HISPSLDLIPSPATFEKIVNIEPERVSDLIHIAA-SFYDYIIVDFGASIDHVGV------WV--LEHLDELCIVTTPSLQ 153 (245)
T ss_dssp EEETTEEEECCCSSHHHHHHCCHHHHHHHHHHHH-HHCSEEEEEEESSCCTTHH------HH--GGGCSEEEEEECSSHH
T ss_pred ecCCCeEEEcCCCChHhhhcCCHHHHHHHHHHHH-hhCCEEEEeCCCCCchHHH------HH--HHHCCEEEEEecCcHH
Confidence 11234443332111000 122334444443 3799999999886533211 11 2347999999998743
Q ss_pred --hhHHHHHHHHhc---cCCcCEEEeecCCCCCChhhHHHHHHHhCCCeEEE
Q 019214 227 --QAAFDQAQAFKQ---SVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFI 273 (344)
Q Consensus 227 --~~~~~~~~~~~~---~~~~~~lVinK~D~~~~~~~~~~~~~~~~~pv~~~ 273 (344)
.........+.. .....++|+|+++...... ........+.|+...
T Consensus 154 ~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~~~~-~~~~~~~~~~~v~~~ 204 (245)
T 3ea0_A 154 SLRRAGQLLKLCKEFEKPISRIEIILNRADTNSRIT-SDEIEKVIGRPISKR 204 (245)
T ss_dssp HHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCTTSC-HHHHHHHHTSCEEEE
T ss_pred HHHHHHHHHHHHHHhCCCccceEEEEecCCCCCCCC-HHHHHHHhCCCeEEE
Confidence 122223333322 1344689999998754321 123334467776644
No 40
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.43 E-value=4.8e-14 Score=137.11 Aligned_cols=158 Identities=21% Similarity=0.307 Sum_probs=87.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...|+++|.|||||||+++.|. |.+.+++.. .++.++.........
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~------~~~~~~v~~-----------~~g~t~~~~~~~~~~----------------- 68 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIA------GERISIVED-----------TPGVTRDRIYSSAEW----------------- 68 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHE------EEEEC----------------------CEEEECTT-----------------
T ss_pred CCEEEEECCCCCcHHHHHHHHh------CCCCcccCC-----------CCCcceeEEEEEEEE-----------------
Confidence 3579999999999999999999 877776665 233333332211111
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHHHHHh--hhhcCCcEEEEEEcCCcch--hHHHHHHHHhccCCcCEEEeecCCCCCCh
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEEMRQV--SEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQSVSVGAVIVTKMDGHAKG 256 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~l~~~--~~~~~~d~illvvda~~~~--~~~~~~~~~~~~~~~~~lVinK~D~~~~~ 256 (344)
.+..+.++||||.........++++.. .....+|.+++|+|++.+. ........+.....+..+|+||+|.....
T Consensus 69 -~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~ 147 (456)
T 4dcu_A 69 -LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMR 147 (456)
T ss_dssp -CSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC------
T ss_pred -CCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhh
Confidence 256789999999763322222333322 2234689999999998753 23334444444445568899999975331
Q ss_pred hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 257 ~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
... .....+ .+.+.+.+|+..|.| +.+|++.+.+.++
T Consensus 148 ~~~-----------------~e~~~l-g~~~~~~iSA~~g~g-v~~L~~~i~~~l~ 184 (456)
T 4dcu_A 148 ANI-----------------YDFYSL-GFGEPYPISGTHGLG-LGDLLDAVAEHFK 184 (456)
T ss_dssp --------------------CCSGGG-SSSSEEECCTTTCTT-HHHHHHHHHTTGG
T ss_pred hhH-----------------HHHHHc-CCCceEEeecccccc-hHHHHHHHHhhcc
Confidence 000 000001 112234688999999 9999999987664
No 41
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.43 E-value=2e-13 Score=132.82 Aligned_cols=164 Identities=18% Similarity=0.226 Sum_probs=98.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHH
Q 019214 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (344)
Q Consensus 99 ~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 178 (344)
.....|+++|.+||||||++++|. |.+...++. .+.+++.........
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~------~~~~~~~~~-----------~~gtt~~~~~~~~~~--------------- 240 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAML------GEERVIVSN-----------VAGTTRDAVDTSFTY--------------- 240 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHH------TSTTEEECC-----------------CTTSEEEEE---------------
T ss_pred cccceeEEecCCCCCHHHHHHHHh------CCCccccCC-----------CCCeEEEEEEEEEEE---------------
Confidence 345789999999999999999999 877777665 333443332211111
Q ss_pred HHhCCCCEEEEcCCCCCcch-----HHHHHHHHHhhhhcCCcEEEEEEcCCcch--hHHHHHHHHhccCCcCEEEeecCC
Q 019214 179 FKKENCDLIIVDTSGRHKQE-----AALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQSVSVGAVIVTKMD 251 (344)
Q Consensus 179 ~~~~~~d~vlIDT~G~~~~~-----~~~~~~l~~~~~~~~~d~illvvda~~~~--~~~~~~~~~~~~~~~~~lVinK~D 251 (344)
.+..+.|+||||+.... .+....++.+.....+|.+++|+|++.+. ..............+..+|+||+|
T Consensus 241 ---~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~D 317 (456)
T 4dcu_A 241 ---NQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWD 317 (456)
T ss_dssp ---TTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGG
T ss_pred ---CCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChh
Confidence 15578999999964211 11122233333344689999999998752 222333333333345688999999
Q ss_pred CCCChh----hHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 252 GHAKGG----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 252 ~~~~~~----~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
+..... ...+.+... +. .....+.+++|+++|+| ++++++.+.+.+
T Consensus 318 l~~~~~~~~~~~~~~~~~~------------~~-~~~~~~~~~~SA~~g~g-v~~l~~~i~~~~ 367 (456)
T 4dcu_A 318 AVDKDESTMKEFEENIRDH------------FQ-FLDYAPILFMSALTKKR-IHTLMPAIIKAS 367 (456)
T ss_dssp GSCCCSSHHHHHHHHHHHH------------CG-GGTTSCEEECCTTTCTT-GGGHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHHHHh------------cc-cCCCCCEEEEcCCCCcC-HHHHHHHHHHHH
Confidence 865321 122222210 00 11234566788899999 999999888765
No 42
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.43 E-value=3.2e-13 Score=122.28 Aligned_cols=193 Identities=18% Similarity=0.133 Sum_probs=106.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
..|+++|++||||||++++|+ |.+. .+.. .+..+......... .
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~------g~~~-~~~~-----------~~~~t~~~~~~~~~------------------~ 47 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALT------GLRQ-HVGN-----------WPGVTVEKKEGIME------------------Y 47 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHH------TTCE-EEEE-----------CTTSSCEEEEEEEE------------------E
T ss_pred eEEEEECCCCCCHHHHHHHHh------CCCc-ccCC-----------CCCeEEEeeEEEEE------------------E
Confidence 679999999999999999998 7654 2222 11111110000000 1
Q ss_pred CCCCEEEEcCCCCCcchHHHHHH-H-HHhhhhcCCcEEEEEEcCCcchhHHHHHHHHhccC-CcCEEEeecCCCCCCh--
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEE-M-RQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV-SVGAVIVTKMDGHAKG-- 256 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~-l-~~~~~~~~~d~illvvda~~~~~~~~~~~~~~~~~-~~~~lVinK~D~~~~~-- 256 (344)
.+..+.++||||..........+ + +.......+|.+++|+|++...........+.... .+..+|+||+|+....
T Consensus 48 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~ 127 (271)
T 3k53_A 48 REKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLMRNLFLTLELFEMEVKNIILVLNKFDLLKKKGA 127 (271)
T ss_dssp TTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHHHHHHHHHHHHHTTCCSEEEEEECHHHHHHHTC
T ss_pred CCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcchhhHHHHHHHHhcCCCCEEEEEEChhcCccccc
Confidence 15568899999975432111111 1 22233357899999999987644443333333333 4568889999964321
Q ss_pred -hhHHHHHHHhCCCeEEEe--cCCCCCcCcCCChHHHHHHHhC----------CCC-hhHHHHHHHhhCC------CCch
Q 019214 257 -GGALSAVAATKSPVIFIG--TGEHMDEFEVFDVKPFVSRLLG----------MGD-WSGFMDKIHEVVP------MDQQ 316 (344)
Q Consensus 257 -~~~~~~~~~~~~pv~~~~--~g~~~~~l~~~~~~~~is~~~g----------~g~-i~~l~~~i~~~~~------~~~~ 316 (344)
..........+.|+..++ .|.++.++.. .+.....+ +++ ++...+.+.+.+. .-..
T Consensus 128 ~~~~~~l~~~lg~~~~~~Sa~~g~gi~~l~~----~i~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~ 203 (271)
T 3k53_A 128 KIDIKKMRKELGVPVIPTNAKKGEGVEELKR----MIALMAEGKVTTNPIIPRYDEDIEREIKHISELLRGTPLAEKYPI 203 (271)
T ss_dssp CCCHHHHHHHHSSCEEECBGGGTBTHHHHHH----HHHHHHHTCCCCCCCCCCCCHHHHHHHHHHHHHHHSSSSTTTSCH
T ss_pred HHHHHHHHHHcCCcEEEEEeCCCCCHHHHHH----HHHHHHhccccCCCCCcCCCHHHHHHHHHHHHHHhhcccccccCh
Confidence 123344556788988887 5655543321 11111111 110 3444444444332 2345
Q ss_pred HHHHHHHhcCCcChHHHH
Q 019214 317 PELLQKLSEGNFTLRIMF 334 (344)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~ 334 (344)
+|++.++.+++..+.+.+
T Consensus 204 ~~~a~~~le~d~~~~~~~ 221 (271)
T 3k53_A 204 RWLALKLLQRDEEVIKLV 221 (271)
T ss_dssp HHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHCCCHHHHHHH
Confidence 888889988877665544
No 43
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.41 E-value=2.9e-13 Score=113.89 Aligned_cols=156 Identities=16% Similarity=0.140 Sum_probs=89.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...|+++|++||||||+++.|+ |.....++. .+.++..........
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~------~~~~~~~~~-----------~~~~t~~~~~~~~~~----------------- 49 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALA------GREAAIVTD-----------IAGTTRDVLREHIHI----------------- 49 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH------TSCCSCCCS-----------STTCCCSCEEEEEEE-----------------
T ss_pred CCEEEEECCCCCCHHHHHHHHh------CCCcceeeC-----------CCCceeceeeEEEEE-----------------
Confidence 3679999999999999999999 665443333 111221111100000
Q ss_pred hCCCCEEEEcCCCCCcchHHHHH-HHH-HhhhhcCCcEEEEEEcCCcch--hHHHHHHHHhcc---CCcCEEEeecCCCC
Q 019214 181 KENCDLIIVDTSGRHKQEAALFE-EMR-QVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQS---VSVGAVIVTKMDGH 253 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~-~l~-~~~~~~~~d~illvvda~~~~--~~~~~~~~~~~~---~~~~~lVinK~D~~ 253 (344)
.+..+.++||||.......... .+. .......+|.+++|+|++... +.......+... ..+..+|.||+|+.
T Consensus 50 -~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 128 (172)
T 2gj8_A 50 -DGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADIT 128 (172)
T ss_dssp -TTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHH
T ss_pred -CCeEEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCC
Confidence 1445789999998643211111 111 122345789999999997542 222222222221 23458899999974
Q ss_pred CChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCC
Q 019214 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (344)
Q Consensus 254 ~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~ 313 (344)
... . .+.. ....+.+.+|+++|+| ++++++.|.+.+..
T Consensus 129 ~~~-----------~--~~~~--------~~~~~~~~~SA~~g~g-v~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 129 GET-----------L--GMSE--------VNGHALIRLSARTGEG-VDVLRNHLKQSMGF 166 (172)
T ss_dssp CCC-----------C--EEEE--------ETTEEEEECCTTTCTT-HHHHHHHHHHHC--
T ss_pred cch-----------h--hhhh--------ccCCceEEEeCCCCCC-HHHHHHHHHHHhhh
Confidence 320 0 0000 0112345689999999 99999999988754
No 44
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=99.41 E-value=6.3e-12 Score=112.88 Aligned_cols=161 Identities=16% Similarity=0.164 Sum_probs=93.5
Q ss_pred eEEEEE-cCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhH-------------HHHHhhc--------ccCCcce
Q 019214 102 SVIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAF-------------DQLKQNA--------TKAKIPF 159 (344)
Q Consensus 102 ~ii~iv-G~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~-------------~~l~~~~--------~~~~v~~ 159 (344)
++|+|+ +.+||||||++.+||..+++.|++|++||+|++.+... +.+.... ...++.+
T Consensus 3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~l~~~~~~~~l~~~l~~~~~~~~~i~~~~~~l~~ 82 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLPVTLQNVLAGEARIDEAIYVGPGGVKV 82 (263)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSSSSHHHHTTCCCCCCCHHHHHTTSSCGGGGCEECGGGCEE
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCCCCCcchhcCCCCCCCCHHHHHcCCCcHHHhheeCCCCeEE
Confidence 567776 56699999999999999999999999999999643221 1111100 0122333
Q ss_pred eccCCCCCH-----HHHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc--hhHHHH
Q 019214 160 YGSYTESDP-----VRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QAAFDQ 232 (344)
Q Consensus 160 ~~~~~~~~~-----~~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~--~~~~~~ 232 (344)
.......+. ...+...+..+. .+||+|||||||..... .. .. ...+|.+++|+.+... ......
T Consensus 83 lp~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~~~~~~~~--~~----~~--~~~ad~vi~v~~~~~~~~~~~~~~ 153 (263)
T 1hyq_A 83 VPAGVSLEGLRKANPEKLEDVLTQIM-ESTDILLLDAPAGLERS--AV----IA--IAAAQELLLVVNPEISSITDGLKT 153 (263)
T ss_dssp EECCSCHHHHHHHCHHHHHHHHHHHH-HTCSEEEEECCSSSSHH--HH----HH--HHHSSEEEEEECSSHHHHHHHHHH
T ss_pred EcCCCCcChhhccChHHHHHHHHHHH-hhCCEEEEeCCCCCChH--HH----HH--HHHCCEEEEEeCCChhHHHHHHHH
Confidence 221111111 122233344443 58999999999865422 11 11 1237899999988743 122222
Q ss_pred HHHHhc-cCCcCEEEeecCCCCCChhhHHHHHHHhCCCeE
Q 019214 233 AQAFKQ-SVSVGAVIVTKMDGHAKGGGALSAVAATKSPVI 271 (344)
Q Consensus 233 ~~~~~~-~~~~~~lVinK~D~~~~~~~~~~~~~~~~~pv~ 271 (344)
...+.. .....++|+|+++...............+.|+.
T Consensus 154 ~~~l~~~~~~~~~vv~N~~~~~~~~~~~~~~~~~~~~~~~ 193 (263)
T 1hyq_A 154 KIVAERLGTKVLGVVVNRITTLGIEMAKNEIEAILEAKVI 193 (263)
T ss_dssp HHHHHHHTCEEEEEEEEEECTTTHHHHHHHHHHHTTSCEE
T ss_pred HHHHHhcCCCeeEEEEccCCcccccchHHHHHHHhCCCeE
Confidence 222222 234568999999976543223344455677765
No 45
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.41 E-value=5.2e-13 Score=113.93 Aligned_cols=159 Identities=19% Similarity=0.135 Sum_probs=87.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCc-cEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWK-PALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~-v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 178 (344)
+...|+++|++||||||+++.|. +.+ ...+.. ....+.. ...+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~------~~~~~~~~~~-----------~~~~t~~-~~~~~----------------- 66 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLI------NRKNLARTSS-----------KPGKTQT-LNFYI----------------- 66 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHH------TC------------------------CC-EEEEE-----------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHh------CCCCccccCC-----------CCCceee-EEEEE-----------------
Confidence 44679999999999999999998 543 222222 1111111 11111
Q ss_pred HHhCCCCEEEEcCCCCCcch-----HHHHHH-HHHhhh-hcCCcEEEEEEcCCcchh--HHHHHHHHhccCCcCEEEeec
Q 019214 179 FKKENCDLIIVDTSGRHKQE-----AALFEE-MRQVSE-ATNPDLVIFVMDSSIGQA--AFDQAQAFKQSVSVGAVIVTK 249 (344)
Q Consensus 179 ~~~~~~d~vlIDT~G~~~~~-----~~~~~~-l~~~~~-~~~~d~illvvda~~~~~--~~~~~~~~~~~~~~~~lVinK 249 (344)
.+..+.++||||..... ...... ...... ....|.+++|+|++.+.. .......+.....+..+|+||
T Consensus 67 ---~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK 143 (195)
T 1svi_A 67 ---INDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATK 143 (195)
T ss_dssp ---ETTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred ---ECCcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEC
Confidence 03467999999964321 111111 122221 223489999999886522 222333333333456889999
Q ss_pred CCCCCChhh--HHHHHHH-hCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 250 MDGHAKGGG--ALSAVAA-TKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 250 ~D~~~~~~~--~~~~~~~-~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
+|....... ....+.. ... ....+.+.+|+++|+| +++++++|.+.+
T Consensus 144 ~Dl~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~Sa~~~~g-v~~l~~~l~~~l 193 (195)
T 1svi_A 144 ADKIPKGKWDKHAKVVRQTLNI--------------DPEDELILFSSETKKG-KDEAWGAIKKMI 193 (195)
T ss_dssp GGGSCGGGHHHHHHHHHHHHTC--------------CTTSEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred cccCChHHHHHHHHHHHHHHcc--------------cCCCceEEEEccCCCC-HHHHHHHHHHHh
Confidence 999754321 1122221 110 1122445678889999 999999987754
No 46
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=99.41 E-value=1.6e-11 Score=112.69 Aligned_cols=147 Identities=19% Similarity=0.191 Sum_probs=92.5
Q ss_pred CCeEEEEEcC-CCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHH------------h---------hcccCCc
Q 019214 100 KPSVIMFVGL-QGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLK------------Q---------NATKAKI 157 (344)
Q Consensus 100 ~~~ii~ivG~-~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~------------~---------~~~~~~v 157 (344)
++++|+|+|+ +|+||||++.+||..+++.|++|++||+|++++.....+. . .....++
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~~l 182 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGGF 182 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTTTCCHHHHTTCCCSSSHHHHHTTSSCHHHHCEEETTTTE
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCCCccHHHHcCCCCCCCHHHHCcCCCCHHHhhhccCCCCE
Confidence 4478999976 6999999999999999999999999999996554322111 0 0011344
Q ss_pred ceeccCC-CCCHHHH-----HHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc--hhH
Q 019214 158 PFYGSYT-ESDPVRI-----AVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QAA 229 (344)
Q Consensus 158 ~~~~~~~-~~~~~~~-----~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~--~~~ 229 (344)
.+..... ..++.+. +.+.+..++ ..||+||||||+.....+.. .+ ...+|.+++|+.+... ...
T Consensus 183 ~vl~~g~~~~~~~ell~~~~l~~ll~~l~-~~yD~VIIDtpp~~~~~d~~-----~l--~~~ad~vilV~~~~~~~~~~~ 254 (299)
T 3cio_A 183 DVITRGQVPPNPSELLMRDRMRQLLEWAN-DHYDLVIVDTPPMLAVSDAA-----VV--GRSVGTSLLVARFGLNTAKEV 254 (299)
T ss_dssp EEECCCSCCSCHHHHHTSHHHHHHHHHHH-HHCSEEEEECCCTTTCTHHH-----HH--GGGCSEEEEEEETTTSCTTHH
T ss_pred EEEECCCCCCCHHHHhCHHHHHHHHHHHH-hCCCEEEEcCCCCchhHHHH-----HH--HHHCCEEEEEEcCCCChHHHH
Confidence 4433222 2334332 233444443 47999999999976432211 01 2247899999987654 233
Q ss_pred HHHHHHHhc-cCCcCEEEeecCCCCC
Q 019214 230 FDQAQAFKQ-SVSVGAVIVTKMDGHA 254 (344)
Q Consensus 230 ~~~~~~~~~-~~~~~~lVinK~D~~~ 254 (344)
......+.. ..++.++|+|++|...
T Consensus 255 ~~~~~~l~~~~~~~~GvVlN~~~~~~ 280 (299)
T 3cio_A 255 SLSMQRLEQAGVNIKGAILNGVIKRA 280 (299)
T ss_dssp HHHHHHHHHTTCCCCCEEEEECCCCC
T ss_pred HHHHHHHHhCCCCeEEEEEeCCccCC
Confidence 333344432 3456789999998754
No 47
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.40 E-value=5.8e-13 Score=109.73 Aligned_cols=155 Identities=16% Similarity=0.203 Sum_probs=86.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
+.|+++|++||||||+++++. +.+...+.. .+..+......... .
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~------~~~~~~~~~-----------~~~~~~~~~~~~~~------------------~ 46 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLL------KKRSAVVAD-----------VPGVTRDLKEGVVE------------------T 46 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHH------HCCC----------------------CCEEEEEE------------------E
T ss_pred CEEEEECCCCCCHHHHHHHHh------CCCeeeccC-----------CCCceecceEEEEE------------------e
Confidence 468999999999999999999 544332222 11111111100000 0
Q ss_pred CCCCEEEEcCCCCCcch---HHHHHHHHHhhhhcCCcEEEEEEcCCcchhH--HHHHHHHhccCCcCEEEeecCCCCCCh
Q 019214 182 ENCDLIIVDTSGRHKQE---AALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFKQSVSVGAVIVTKMDGHAKG 256 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~---~~~~~~l~~~~~~~~~d~illvvda~~~~~~--~~~~~~~~~~~~~~~lVinK~D~~~~~ 256 (344)
.+..+.++||||..... ....... ......+|.+++|+|++.+... ......+.....+..+|.||+|.....
T Consensus 47 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~--~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 124 (161)
T 2dyk_A 47 DRGRFLLVDTGGLWSGDKWEKKIQEKV--DRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHE 124 (161)
T ss_dssp TTEEEEEEECGGGCSSSSCCHHHHHHH--HHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGG
T ss_pred CCceEEEEECCCCCCccchHHHHHHHH--HHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccch
Confidence 14577899999986521 1111111 1123468999999999864221 222233332334568899999986542
Q ss_pred hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 257 ~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
....+.. . + ...+.+.+|+++|.| ++++++.+.+.++
T Consensus 125 ~~~~~~~-~----------------~-~~~~~~~~Sa~~~~g-v~~l~~~l~~~l~ 161 (161)
T 2dyk_A 125 LYLGPLY-G----------------L-GFGDPIPTSSEHARG-LEELLEAIWERLP 161 (161)
T ss_dssp GGCGGGG-G----------------G-SSCSCEECBTTTTBS-HHHHHHHHHHHCC
T ss_pred HhHHHHH-h----------------C-CCCCeEEEecccCCC-hHHHHHHHHHhCc
Confidence 1111110 1 1 112345678899999 9999999887653
No 48
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=99.40 E-value=4.7e-12 Score=113.97 Aligned_cols=146 Identities=16% Similarity=0.074 Sum_probs=84.8
Q ss_pred CeEEEEE-cCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhc---------------ccCCcceeccCC
Q 019214 101 PSVIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNA---------------TKAKIPFYGSYT 164 (344)
Q Consensus 101 ~~ii~iv-G~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~---------------~~~~v~~~~~~~ 164 (344)
+++|+|+ +.+||||||++.+||..|++.|++|++||+|++.+.....+.... ...++.+.....
T Consensus 18 ~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~vlp~~~ 97 (262)
T 2ph1_A 18 KSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLGPSIPILFGLRNARIAVSAEGLEPVLTQKYGIKVMSMQF 97 (262)
T ss_dssp SCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSCCHHHHHTTCCSCCCEEETTEEECEECTTTCCEEECGGG
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHhcCCCccccccccCccccccCCCCeEEEeccc
Confidence 3678877 556999999999999999999999999999998764322111000 011222211100
Q ss_pred ----C------CC--HHHHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc--hhHH
Q 019214 165 ----E------SD--PVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QAAF 230 (344)
Q Consensus 165 ----~------~~--~~~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~--~~~~ 230 (344)
. .. ....+.+.+..+....||+|||||||....... .......+|.+++|+.+... ....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~ViID~pp~~~~~~~------~~~~~~~aD~viiv~~~~~~s~~~~~ 171 (262)
T 2ph1_A 98 LLPKENTPVIWRGPLIAGMIREFLGRVAWGELDHLLIDLPPGTGDAPL------TVMQDAKPTGVVVVSTPQELTAVIVE 171 (262)
T ss_dssp GSTTCSSCCCCCSHHHHHHHHHHHHSBCCCSCSEEEEECCSSSSSHHH------HHHHHHCCSEEEEEECSSSCCHHHHH
T ss_pred cCCCcccchhhcCchHHHHHHHHHHHhhccCCCEEEEECcCCCchHHH------HHHhhccCCeEEEEecCccchHHHHH
Confidence 0 00 112222333333236899999999886543211 01111247899999988754 2222
Q ss_pred HHHHHHhc-cCCcCEEEeecCCC
Q 019214 231 DQAQAFKQ-SVSVGAVIVTKMDG 252 (344)
Q Consensus 231 ~~~~~~~~-~~~~~~lVinK~D~ 252 (344)
.....+.. ..++.++|+|+.|.
T Consensus 172 ~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 172 KAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp HHHHHHHTTTCCEEEEEETTCCE
T ss_pred HHHHHHHhCCCCEEEEEECCCcc
Confidence 23333332 23556799999874
No 49
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=99.39 E-value=1.2e-11 Score=112.06 Aligned_cols=147 Identities=16% Similarity=0.210 Sum_probs=90.4
Q ss_pred CCeEEEEEcC-CCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHH------------Hh---------hcccCCc
Q 019214 100 KPSVIMFVGL-QGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQL------------KQ---------NATKAKI 157 (344)
Q Consensus 100 ~~~ii~ivG~-~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l------------~~---------~~~~~~v 157 (344)
+.++|+|+|+ +|+||||++.+||..+++.|++|++||+|++++.....+ .. .....++
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~~l 160 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLLLNWSTYQDSIISTEIEDL 160 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSSCCHHHHTTCCCSSSHHHHHTTSSCHHHHEEECSSTTE
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCccHHHHcCCCCCCCHHHHhCCCCCHHHcEEeCCCCCE
Confidence 4578999976 699999999999999999999999999998775432211 10 0011344
Q ss_pred ceeccCC-CCCHHHH-----HHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc-h-hH
Q 019214 158 PFYGSYT-ESDPVRI-----AVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG-Q-AA 229 (344)
Q Consensus 158 ~~~~~~~-~~~~~~~-----~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~-~-~~ 229 (344)
.+..... ..++.+. +.+.+..++ ..||+||||||+........ .+. ..+|.+++|+.+... . ..
T Consensus 161 ~vl~~g~~~~~~~ell~~~~l~~ll~~l~-~~yD~VIIDtpp~~~~~d~~-----~l~--~~aD~vilVv~~~~~~~~~~ 232 (271)
T 3bfv_A 161 DVLTSGPIPPNPSELITSRAFANLYDTLL-MNYNFVIIDTPPVNTVTDAQ-----LFS--KFTGNVVYVVNSENNNKDEV 232 (271)
T ss_dssp EEECCCSCCSCHHHHHTSHHHHHHHHHHH-HHCSEEEEECCCTTTCSHHH-----HHH--HHHCEEEEEEETTSCCHHHH
T ss_pred EEEECCCCCCCHHHHhChHHHHHHHHHHH-hCCCEEEEeCCCCchHHHHH-----HHH--HHCCEEEEEEeCCCCcHHHH
Confidence 4433222 2344433 233444443 47999999999975432211 011 125889999998754 2 22
Q ss_pred HHHHHHHhc-cCCcCEEEeecCCCCC
Q 019214 230 FDQAQAFKQ-SVSVGAVIVTKMDGHA 254 (344)
Q Consensus 230 ~~~~~~~~~-~~~~~~lVinK~D~~~ 254 (344)
......+.. ..++.++|+|++|...
T Consensus 233 ~~~~~~l~~~~~~~~GvVlN~~~~~~ 258 (271)
T 3bfv_A 233 KKGKELIEATGAKLLGVVLNRMPKDK 258 (271)
T ss_dssp HHHHHHHHTTTCEEEEEEEEEECC--
T ss_pred HHHHHHHHhCCCCEEEEEEeCCcCCC
Confidence 333334432 2345689999998643
No 50
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=99.39 E-value=6.7e-12 Score=113.09 Aligned_cols=165 Identities=16% Similarity=0.107 Sum_probs=92.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHH------------HHHhh-----------cccCCcc
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFD------------QLKQN-----------ATKAKIP 158 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~------------~l~~~-----------~~~~~v~ 158 (344)
++|+|.|++||||||++.+||..|++.|++|++||+|++.+.... .+... ....++.
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~~~l~ 81 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKADSTRLLLGGLAQKSVLDTLREEGEDVELDSILKEGYGGIR 81 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTSCSSHHHHTSCCCCCHHHHHHHHGGGCCHHHHCEECGGGCE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCCCHHHHhcCCCCcccHHHHHhccCcCCCHHHhhccCCCCee
Confidence 578888999999999999999999999999999999997654321 11110 0112333
Q ss_pred eeccCCCCC----H-HHHH--HHHHHHHH--hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch--
Q 019214 159 FYGSYTESD----P-VRIA--VEGVETFK--KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ-- 227 (344)
Q Consensus 159 ~~~~~~~~~----~-~~~~--~~~l~~~~--~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~-- 227 (344)
+........ . .... ...++.+. ...||+|||||||..... .+.. ......+|.+++|+.+....
T Consensus 82 vl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~yD~iiiD~~~~~~~~-~~~~----~~~~~~aD~viiv~~~~~~s~~ 156 (269)
T 1cp2_A 82 CVESGGPEPGVGCAGRGIITSINMLEQLGAYTDDLDYVFYDVLGDVVCG-GFAM----PIREGKAQEIYIVASGEMMALY 156 (269)
T ss_dssp EEECCCCCTTSSCHHHHHHHHHHHHHHTTCCCTTCSEEEEEEECSSCST-TTTH----HHHTTSCCEEEEEECSSHHHHH
T ss_pred EEeCCCchhhccccCcchhhHHHHHHHHHhhccCCCEEEEeCCchhhhh-hhhh----hhhHhhCCEEEEeecCchhhHH
Confidence 322111110 0 1110 11122232 347999999999864321 1100 01113589999999987431
Q ss_pred hH---HHHHHHHhc--cCCcCEEEeecCCCCCChhhHHHHHHHhCCCeE
Q 019214 228 AA---FDQAQAFKQ--SVSVGAVIVTKMDGHAKGGGALSAVAATKSPVI 271 (344)
Q Consensus 228 ~~---~~~~~~~~~--~~~~~~lVinK~D~~~~~~~~~~~~~~~~~pv~ 271 (344)
.. .+.+..+.. ..++.++|+|+.+...............+.|+.
T Consensus 157 ~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~~~~~~~~~l~~~~~~~v~ 205 (269)
T 1cp2_A 157 AANNISKGIQKYAKSGGVRLGGIICNSRKVANEYELLDAFAKELGSQLI 205 (269)
T ss_dssp HHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCCHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEeecCCcchhHHHHHHHHHHcCCccc
Confidence 11 222233222 233458999999754332222233355787765
No 51
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.39 E-value=3.6e-13 Score=121.19 Aligned_cols=189 Identities=19% Similarity=0.176 Sum_probs=106.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...|+++|.|||||||++++|+ |.+..+-.. +..+........ .
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~------g~~~~~~~~------------pg~tv~~~~~~~--~---------------- 48 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALT------GTKQYVANW------------PGVTVEKKEGVF--T---------------- 48 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH------TTCEEEEEC------------TTSCCEEEEEEE--E----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHH------CCCCcccCC------------CCceEEEEEEEE--E----------------
Confidence 3579999999999999999999 766542221 111111000000 0
Q ss_pred hCCCCEEEEcCCCCCcchH-HHHHHH-HHhhhhcCCcEEEEEEcCCcchhHHHHHHHHhccCCcCEEEeecCCCCCChh-
Q 019214 181 KENCDLIIVDTSGRHKQEA-ALFEEM-RQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGG- 257 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~-~~~~~l-~~~~~~~~~d~illvvda~~~~~~~~~~~~~~~~~~~~~lVinK~D~~~~~~- 257 (344)
..++.+.|+||||...... ...+.+ +.......+|.+++|+|++...........+.....+..+|+||+|+....+
T Consensus 49 ~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i 128 (258)
T 3a1s_A 49 YKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQSLYLLLEILEMEKKVILAMTAIDEAKKTGM 128 (258)
T ss_dssp ETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTC
T ss_pred ECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhhHHHHHHHHHhcCCCEEEEEECcCCCCccch
Confidence 1156789999999754321 111112 2222234789999999998765444444444444445688999999843211
Q ss_pred --hHHHHHHHhCCCeEEEe--cCCCCCcCcCCChHHHHHHHh----------CCCC-hhHHHHHHHhhCCC----CchHH
Q 019214 258 --GALSAVAATKSPVIFIG--TGEHMDEFEVFDVKPFVSRLL----------GMGD-WSGFMDKIHEVVPM----DQQPE 318 (344)
Q Consensus 258 --~~~~~~~~~~~pv~~~~--~g~~~~~l~~~~~~~~is~~~----------g~g~-i~~l~~~i~~~~~~----~~~~~ 318 (344)
.........+.|+..++ .|.++.++.. .++.... .++. ++.-+..|.+.+.. ...+|
T Consensus 129 ~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~----~i~~~~~~~~~~~~~~~~y~~~~~~~i~~~~~~~~~~~~~~~~r~ 204 (258)
T 3a1s_A 129 KIDRYELQKHLGIPVVFTSSVTGEGLEELKE----KIVEYAQKNTILHRMILDYGEKVESEIKKVENFLRDKKLRINPRY 204 (258)
T ss_dssp CBCHHHHHHHHCSCEEECCTTTCTTHHHHHH----HHHHHHHSSSCSCCCCCCCCHHHHHHHHHHHHHHTTSCCSSCHHH
T ss_pred HHHHHHHHHHcCCCEEEEEeeCCcCHHHHHH----HHHHHhhccccCCCcccCCchhHHHHHHHHHHHHhhcccccchHH
Confidence 23344566788988887 6666544321 1111111 1221 34444444443322 34688
Q ss_pred HHHHHhcCCcC
Q 019214 319 LLQKLSEGNFT 329 (344)
Q Consensus 319 ~~~~~~~~~~~ 329 (344)
++-++++++..
T Consensus 205 ~a~~~le~d~~ 215 (258)
T 3a1s_A 205 FALKYLSGDPE 215 (258)
T ss_dssp HHHHHHTTCHH
T ss_pred HHHHHHCCCHH
Confidence 88888888743
No 52
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=99.38 E-value=2.5e-11 Score=110.62 Aligned_cols=165 Identities=15% Similarity=0.105 Sum_probs=92.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHH------------HHHhh-------------cccC
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFD------------QLKQN-------------ATKA 155 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~------------~l~~~-------------~~~~ 155 (344)
.++|+|.|++||||||++.+||..|++.|++|++||+|++.+.... .+... ....
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~i~~~~~ 81 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADSTRLILHSKAQNTIMEMAAEAGTVEDLELEDVLKAGYG 81 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSSCSSHHHHCCSSCCBHHHHHHTTSSGGGCCHHHHCEECGG
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCHHHHhcCCCCCCcHHHHHhcccccccCCHHHhhccCCC
Confidence 3678889999999999999999999999999999999997654321 11110 0011
Q ss_pred CcceeccCCCC----CH-HHH--HHHHHHHHH--hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc
Q 019214 156 KIPFYGSYTES----DP-VRI--AVEGVETFK--KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG 226 (344)
Q Consensus 156 ~v~~~~~~~~~----~~-~~~--~~~~l~~~~--~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~ 226 (344)
++.+....... .. ... ....++.+. ..+||+|||||||...... +. .......+|.+++|+.+...
T Consensus 82 ~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~yD~ViID~~~~~~~~~-~~----~~~~~~~aD~viiv~~~~~~ 156 (289)
T 2afh_E 82 GVKCVESGGPEPGVGCAGRGVITAINFLEEEGAYEDDLDFVFYDVLGDVVCGG-FA----MPIRENKAQEIYIVCSGEMM 156 (289)
T ss_dssp GCEEEECCCCCTTTCCHHHHHHHHHHHHHHTTCSSTTCSEEEEEEECSSCCTT-TT----HHHHTTCCCEEEEEECSSHH
T ss_pred CeEEEeCCCccccccccchhhhHHHHHHHHHHhhccCCCEEEEeCCCccccch-hh----hhhhhhhCCEEEEEecCCHH
Confidence 22222211110 00 011 112222332 3479999999998643221 10 00112358999999988643
Q ss_pred h--hH---HHHHHHHhc--cCCcCEEEeecCCCCCChhhHHH-HHHHhCCCeE
Q 019214 227 Q--AA---FDQAQAFKQ--SVSVGAVIVTKMDGHAKGGGALS-AVAATKSPVI 271 (344)
Q Consensus 227 ~--~~---~~~~~~~~~--~~~~~~lVinK~D~~~~~~~~~~-~~~~~~~pv~ 271 (344)
. .. .+.+..+.. ..++.++|+|+.+... .....+ .....+.|+.
T Consensus 157 s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~~-~~~~~~~l~~~~g~~~l 208 (289)
T 2afh_E 157 AMYAANNISKGIVKYANSGSVRLGGLICNSRNTDR-EDELIIALANKLGTQMI 208 (289)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTT-HHHHHHHHHHHHTSCEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEEEecCCchh-HHHHHHHHHHHcCcccc
Confidence 1 11 222333322 2334589999987432 223333 3345777765
No 53
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=99.38 E-value=3.8e-12 Score=114.70 Aligned_cols=161 Identities=18% Similarity=0.130 Sum_probs=91.3
Q ss_pred CCCeEEEEE-cCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhc-------------------------
Q 019214 99 GKPSVIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNA------------------------- 152 (344)
Q Consensus 99 ~~~~ii~iv-G~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~------------------------- 152 (344)
.++++|+|+ +.+||||||++.+||..|+ +|++|++||+|++.+..........
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~i 103 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQASITSYFYEKIEKLGINFTKFNIYEILKENVDIDSTI 103 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTTCHHHHHTHHHHHHTTCCTTTSSHHHHHTTSSCGGGGC
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCCCCHHHHhhccccccccCcccccHHHHhcCCCCHHHhh
Confidence 356888887 5559999999999999999 9999999999997643321100000
Q ss_pred --ccCCcceeccCCC-----CC----HHHHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEE
Q 019214 153 --TKAKIPFYGSYTE-----SD----PVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVM 221 (344)
Q Consensus 153 --~~~~v~~~~~~~~-----~~----~~~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvv 221 (344)
...++.+...... .. ....+.+.+..+ ...||+||||||+..... . ......+|.+++|+
T Consensus 104 ~~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~l~~l-~~~yD~viiD~pp~~~~~--~------~~~l~~aD~vivv~ 174 (267)
T 3k9g_A 104 INVDNNLDLIPSYLTLHNFSEDKIEHKDFLLKTSLGTL-YYKYDYIVIDTNPSLDVT--L------KNALLCSDYVIIPM 174 (267)
T ss_dssp EEEETTEEEECCCGGGGGTTTCCCTTGGGHHHHHHHTT-CTTCSEEEEEECSSCSHH--H------HHHHTTCSEEEEEE
T ss_pred ccCCCCEEEEeCChHHHHHHHhhhhhHHHHHHHHHHHh-hcCCCEEEEECcCCccHH--H------HHHHHHCCeEEEEe
Confidence 0022222211100 00 112333444444 357999999998865321 1 11123489999999
Q ss_pred cCCcch-h-HHHHHHHHhc---cCCcCEEEeecCCCCCChhhHHHHHHHhCCCeE
Q 019214 222 DSSIGQ-A-AFDQAQAFKQ---SVSVGAVIVTKMDGHAKGGGALSAVAATKSPVI 271 (344)
Q Consensus 222 da~~~~-~-~~~~~~~~~~---~~~~~~lVinK~D~~~~~~~~~~~~~~~~~pv~ 271 (344)
.+.... . .......+.. ..+ .++|+|+++.........+.+.. +.|+.
T Consensus 175 ~~~~~s~~~~~~~~~~l~~~~~~~~-~~vv~N~~~~~~~~~~~~~~l~~-~~~~~ 227 (267)
T 3k9g_A 175 TAEKWAVESLDLFNFFVRKLNLFLP-IFLIITRFKKNRTHKTLFEILKT-KDRFL 227 (267)
T ss_dssp ESCTTHHHHHHHHHHHHHTTTCCCC-EEEEEEEECTTCSCCHHHHHHTT-STTEE
T ss_pred CCChHHHHHHHHHHHHHHHHhccCC-EEEEEecccCcchHHHHHHHHhc-Ccccc
Confidence 987541 1 2222233322 223 36899999544433444444443 55544
No 54
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=99.37 E-value=1.4e-11 Score=110.27 Aligned_cols=162 Identities=11% Similarity=0.097 Sum_probs=93.6
Q ss_pred eEEEEEc-CCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHH--------------HH------h----hcccCC
Q 019214 102 SVIMFVG-LQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQ--------------LK------Q----NATKAK 156 (344)
Q Consensus 102 ~ii~ivG-~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~--------------l~------~----~~~~~~ 156 (344)
++|+|+| .+||||||++.+||..|+++|++|++||+|++.+..... +. . .....+
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~lg~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 82 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRTEN 82 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSSCCHHHHTTCGGGCCSCHHHHHTTSSCHHHHCEECSSSTT
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCCCCChhHHhCCCCcccCCHHHHhcCCCChHHheeccCCCCC
Confidence 6788875 459999999999999999999999999999954332111 00 0 001123
Q ss_pred cceeccCCCCC----HHHHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc--hhHH
Q 019214 157 IPFYGSYTESD----PVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QAAF 230 (344)
Q Consensus 157 v~~~~~~~~~~----~~~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~--~~~~ 230 (344)
+.+.......+ ....+.+.+..+....||+||||||+..... . ......+|.+++|++++.. ....
T Consensus 83 l~~lp~~~~~~~~~~~~~~~~~~l~~l~~~~yD~viiD~p~~~~~~--~------~~~l~~ad~vi~v~~~~~~s~~~~~ 154 (260)
T 3q9l_A 83 LYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDSPAGIETG--A------LMALYFADEAIITTNPEVSSVRDSD 154 (260)
T ss_dssp EEEECCCSCCCTTSSCHHHHHHHHHHHHHTTCSEEEEECCSSSSHH--H------HHHHHTCSEEEEEECSSHHHHHHHH
T ss_pred EEEecCCCccchhhCCHHHHHHHHHHHhccCCCEEEEcCCCCCCHH--H------HHHHHhCCEEEEEecCChhHHHHHH
Confidence 33332211111 1223444555554438999999998865421 1 1112358999999998753 1222
Q ss_pred HHHHHHhccC---------CcCEEEeecCCCCCChh----hHHHHHHHhCCCeE
Q 019214 231 DQAQAFKQSV---------SVGAVIVTKMDGHAKGG----GALSAVAATKSPVI 271 (344)
Q Consensus 231 ~~~~~~~~~~---------~~~~lVinK~D~~~~~~----~~~~~~~~~~~pv~ 271 (344)
.....+.... ...++|+|+++...... .........+.|+.
T Consensus 155 ~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (260)
T 3q9l_A 155 RILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKLV 208 (260)
T ss_dssp HHHHHHTTSSHHHHTTCSCCEEEEEEEEECHHHHHTTSSCCHHHHHHHHCSEEE
T ss_pred HHHHHHHHhccccccccCCcceEEEEecCCccccccccccCHHHHHHHhCCceE
Confidence 2233332211 34589999998532110 11234445677765
No 55
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=99.37 E-value=1.5e-11 Score=108.44 Aligned_cols=161 Identities=17% Similarity=0.230 Sum_probs=92.8
Q ss_pred eEEEEEc-CCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchh-------------HHHHHhhcc---------cCCcc
Q 019214 102 SVIMFVG-LQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA-------------FDQLKQNAT---------KAKIP 158 (344)
Q Consensus 102 ~ii~ivG-~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~-------------~~~l~~~~~---------~~~v~ 158 (344)
++|+|+| .+|+||||++.+||..+++.|++|++||+|++.+.. .+.+..... ..++.
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~l~ 82 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDPDVTLHDVLAGEANVEDAIYMTQFDNVY 82 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTSCCHHHHTTCCCCSSCHHHHHTTSSCGGGGCEECSSTTEE
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCCChhHhcCCCCCCCCHHHHhcCCCCHHHHhhcCCCCCEE
Confidence 6788875 559999999999999999999999999999964321 111111000 02333
Q ss_pred eeccCCCCCH-----HHHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc--hhHHH
Q 019214 159 FYGSYTESDP-----VRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QAAFD 231 (344)
Q Consensus 159 ~~~~~~~~~~-----~~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~--~~~~~ 231 (344)
+.......+. ...+.+.++.+. ..||+||||||+..... . ......+|.+++|+.+... .....
T Consensus 83 ~lp~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~~~~~~~~--~------~~~~~~ad~vi~v~~~~~~~~~~~~~ 153 (237)
T 1g3q_A 83 VLPGAVDWEHVLKADPRKLPEVIKSLK-DKFDFILIDCPAGLQLD--A------MSAMLSGEEALLVTNPEISCLTDTMK 153 (237)
T ss_dssp EECCCCSHHHHHHCCGGGHHHHHHTTG-GGCSEEEEECCSSSSHH--H------HHHHTTCSEEEEEECSCHHHHHHHHH
T ss_pred EEeCCCccchhhhcCHHHHHHHHHHHH-hcCCEEEEECCCCcCHH--H------HHHHHHCCeEEEEecCCcccHHHHHH
Confidence 2221110001 111223344443 57999999998865422 1 1112357999999988753 12222
Q ss_pred HHHHHhc-cCCcCEEEeecCCCCCChhhHHHHHHHhCCCeE
Q 019214 232 QAQAFKQ-SVSVGAVIVTKMDGHAKGGGALSAVAATKSPVI 271 (344)
Q Consensus 232 ~~~~~~~-~~~~~~lVinK~D~~~~~~~~~~~~~~~~~pv~ 271 (344)
....+.. .....++|+|+++...............+.|+.
T Consensus 154 ~~~~l~~~~~~~~~vv~N~~~~~~~~~~~~~~~~~~~~~~~ 194 (237)
T 1g3q_A 154 VGIVLKKAGLAILGFVLNRYGRSDRDIPPEAAEDVMEVPLL 194 (237)
T ss_dssp HHHHHHHTTCEEEEEEEEEETSCTTCCCHHHHHHHHCSCEE
T ss_pred HHHHHHhCCCceEEEEEecCCcccchhHHHHHHHHhCccce
Confidence 3333332 234568999999875433223333444677754
No 56
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=99.37 E-value=6.5e-12 Score=114.98 Aligned_cols=144 Identities=17% Similarity=0.192 Sum_probs=84.5
Q ss_pred eEEEEEc---CCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhc-c----------------------cC
Q 019214 102 SVIMFVG---LQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNA-T----------------------KA 155 (344)
Q Consensus 102 ~ii~ivG---~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~-~----------------------~~ 155 (344)
++|+|++ ++||||||++.+||..+++.|++|++||+|++.+.....-..+. . ..
T Consensus 35 ~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 114 (298)
T 2oze_A 35 EAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQATLTKDLAKTFKVELPRVNFYEGLKNGNLASSIVHLTD 114 (298)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHTTTSCCCCCSSCHHHHHHHTCCGGGCEESSS
T ss_pred cEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHhccCCCCcccHHHHHhcCChhhhhcccCC
Confidence 4577765 88999999999999999999999999999998653211000000 0 02
Q ss_pred CcceeccCCCCC-HH------------HHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEc
Q 019214 156 KIPFYGSYTESD-PV------------RIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMD 222 (344)
Q Consensus 156 ~v~~~~~~~~~~-~~------------~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvd 222 (344)
++.+........ .. ..+.+.+..+ ...||+|||||||....... ..+ ..+|.+++|+.
T Consensus 115 ~l~vlp~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~l-~~~yD~IiiD~pp~~~~~~~-----~~l---~~aD~viiv~~ 185 (298)
T 2oze_A 115 NLDLIPGTFDLMLLPKLTRSWTFENESRLLATLLAPL-KSDYDLIIIDTVPTPSVYTN-----NAI---VASDYVMIPLQ 185 (298)
T ss_dssp SEEEECCCGGGGGHHHHTTTSCHHHHHTHHHHHHGGG-GGGCSEEEEEECSSCSHHHH-----HHH---HHCSEEEEEEC
T ss_pred CeEEEeCCchHHHHHHHhhhhccccHHHHHHHHHHHH-hcCCCEEEEECCCCccHHHH-----HHH---HHCCeEEEEec
Confidence 222222111000 00 1123333333 35799999999987643211 111 13799999999
Q ss_pred CCcc--hhH---HHHHHH----HhccCCcCEEEeecCCCCC
Q 019214 223 SSIG--QAA---FDQAQA----FKQSVSVGAVIVTKMDGHA 254 (344)
Q Consensus 223 a~~~--~~~---~~~~~~----~~~~~~~~~lVinK~D~~~ 254 (344)
+... ... .+.+.. ++...++.++|+|+.|...
T Consensus 186 ~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~ 226 (298)
T 2oze_A 186 AEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDS 226 (298)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCc
Confidence 8753 111 222222 2223455689999999765
No 57
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.36 E-value=4.5e-12 Score=119.30 Aligned_cols=156 Identities=17% Similarity=0.131 Sum_probs=89.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
+...++++|++||||||+++.|+ |..+. +... ++++.. ..+....
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~------~~~~~-~~~~-----------~~~t~~-~~~~~~~---------------- 210 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALT------TAKPE-IASY-----------PFTTRG-INVGQFE---------------- 210 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHC------SSCCE-EECC-----------TTCSSC-EEEEEEE----------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHh------CCCCc-cCCC-----------CCeeec-eeEEEEE----------------
Confidence 44689999999999999999998 76543 2221 111111 1100000
Q ss_pred HhCCCCEEEEcCCCCCcchH---HHHHHHHHh-hhhcCCcEEEEEEcCCcch--hH---HHHHHHHhcc--CCcCEEEee
Q 019214 180 KKENCDLIIVDTSGRHKQEA---ALFEEMRQV-SEATNPDLVIFVMDSSIGQ--AA---FDQAQAFKQS--VSVGAVIVT 248 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~~---~~~~~l~~~-~~~~~~d~illvvda~~~~--~~---~~~~~~~~~~--~~~~~lVin 248 (344)
..+.++.++||||...... ...+. ..+ .....+|.+++|+|++... +. ......+... ..+..+|+|
T Consensus 211 -~~~~~~~l~Dt~G~~~~~~~~~~~~~~-~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~N 288 (357)
T 2e87_A 211 -DGYFRYQIIDTPGLLDRPISERNEIEK-QAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVIN 288 (357)
T ss_dssp -ETTEEEEEEECTTTSSSCSTTSCHHHH-HHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEEC
T ss_pred -ecCceEEEEeCCCccccchhhhhHHHH-HHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 0145688999999854211 01111 111 1223589999999987532 22 2223333221 245578899
Q ss_pred cCCCCCChhh--HHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 249 KMDGHAKGGG--ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 249 K~D~~~~~~~--~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
|+|....... ....+...+ .+.+.+|+.+|+| +++|+++|.+.+
T Consensus 289 K~Dl~~~~~~~~~~~~~~~~~------------------~~~~~iSA~~g~g-i~~l~~~i~~~l 334 (357)
T 2e87_A 289 KIDVADEENIKRLEKFVKEKG------------------LNPIKISALKGTG-IDLVKEEIIKTL 334 (357)
T ss_dssp CTTTCCHHHHHHHHHHHHHTT------------------CCCEECBTTTTBT-HHHHHHHHHHHH
T ss_pred CcccCChHHHHHHHHHHHhcC------------------CCeEEEeCCCCcC-HHHHHHHHHHHH
Confidence 9999764321 222222111 2345577889999 999999998876
No 58
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.35 E-value=8.6e-13 Score=118.48 Aligned_cols=165 Identities=21% Similarity=0.182 Sum_probs=91.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
+...|+++|.+||||||+++.|. |.++...+..+.. .++........
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~------~~~~~~~~~~~~~----------~t~~~~~~~~~----------------- 67 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSIL------RKQAFESKLGSQT----------LTKTCSKSQGS----------------- 67 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHH------TSCCSCCCTTSCC----------CCCSCEEEEEE-----------------
T ss_pred CceEEEEECCCCCCHHHHHHHHh------CCCCcccCCCCCc----------eeeeeEEEEEE-----------------
Confidence 44689999999999999999999 7765544331110 11111100010
Q ss_pred HhCCCCEEEEcCCCCCcch---HHHHHHHHHh--hhhcCCcEEEEEEcCCcc-hhHHHHHHHHhcc-----CCcCEEEee
Q 019214 180 KKENCDLIIVDTSGRHKQE---AALFEEMRQV--SEATNPDLVIFVMDSSIG-QAAFDQAQAFKQS-----VSVGAVIVT 248 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~---~~~~~~l~~~--~~~~~~d~illvvda~~~-~~~~~~~~~~~~~-----~~~~~lVin 248 (344)
..+..+.|+||||..... ......+... .....+|.+++|+|++.- .........+... ..+..+|+|
T Consensus 68 -~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~ 146 (260)
T 2xtp_A 68 -WGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFT 146 (260)
T ss_dssp -ETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEE
T ss_pred -eCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEE
Confidence 125678999999975432 2222222211 123468999999999752 2222222222211 234467777
Q ss_pred -cCCCCCCh-hh---------HHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 249 -KMDGHAKG-GG---------ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 249 -K~D~~~~~-~~---------~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
|+|..... .. ....+...+ .+ +..+.+ +.+|+.+|.| ++++++.|.+.+.
T Consensus 147 nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~---------~~---~~~~~~-~~~SA~~~~g-v~~l~~~i~~~~~ 207 (260)
T 2xtp_A 147 HKEDLNGGSLMDYMHDSDNKALSKLVAACG---------GR---ICAFNN-RAEGSNQDDQ-VKELMDCIEDLLM 207 (260)
T ss_dssp CGGGGTTCCHHHHHHHCCCHHHHHHHHHTT---------TC---EEECCT-TCCHHHHHHH-HHHHHHHHHHHHH
T ss_pred cccccCCccHHHHHHhcchHHHHHHHHHhC---------Ce---EEEecC-cccccccHHH-HHHHHHHHHHHHH
Confidence 99986431 11 001222111 11 111333 6789999999 9999998877653
No 59
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.35 E-value=3.4e-12 Score=106.31 Aligned_cols=155 Identities=17% Similarity=0.073 Sum_probs=86.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
..|+++|++||||||+++.|+ |.+.. ++. .+..+......... .
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~------~~~~~-~~~-----------~~~~t~~~~~~~~~------------------~ 47 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALT------GENVY-IGN-----------WPGVTVEKKEGEFE------------------Y 47 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHH------CCSSS-CC----------------CCCCCEEEEE------------------E
T ss_pred cEEEEECCCCCCHHHHHHHHh------CCCee-ccC-----------CCCcceeeeEEEEE------------------E
Confidence 579999999999999999998 64321 111 11111111100000 0
Q ss_pred CCCCEEEEcCCCCCcchH-HHHHHHH-HhhhhcCCcEEEEEEcCCcchhHHHHHHHHhccCCcCEEEeecCCCCCChh--
Q 019214 182 ENCDLIIVDTSGRHKQEA-ALFEEMR-QVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGG-- 257 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~-~~~~~l~-~~~~~~~~d~illvvda~~~~~~~~~~~~~~~~~~~~~lVinK~D~~~~~~-- 257 (344)
.+..+.++||||...... ...+.+. .......+|.+++|+|++...........+.....+..+|.||+|+.....
T Consensus 48 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~ 127 (165)
T 2wji_A 48 NGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAKSLGIE 127 (165)
T ss_dssp TTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHHHHHHHHHHHHHTTCCEEEEEECHHHHHHTTCC
T ss_pred CCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchhHhHHHHHHHHhcCCCEEEEEEchHhccccChh
Confidence 145678999999754310 0111121 122223689999999997643333333333333345588899999742110
Q ss_pred -hHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 258 -GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 258 -~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
.........+. +.+.+|+++|+| ++++++.+.+.+
T Consensus 128 ~~~~~~~~~~~~------------------~~~~~SA~~~~~-v~~l~~~l~~~~ 163 (165)
T 2wji_A 128 IDVDKLEKILGV------------------KVVPLSAAKKMG-IEELKKAISIAV 163 (165)
T ss_dssp CCHHHHHHHHTS------------------CEEECBGGGTBS-HHHHHHHHHHHT
T ss_pred hHHHHHHHHhCC------------------CEEEEEcCCCCC-HHHHHHHHHHHh
Confidence 11112222221 234578889999 999999987765
No 60
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.34 E-value=5.2e-12 Score=116.43 Aligned_cols=118 Identities=14% Similarity=0.089 Sum_probs=65.4
Q ss_pred CCCEEEEcCCCCCcchH-----HHHHHHH--HhhhhcCCcEEEEEEcC-Ccc---hhHHHHHHHHhccCCcCEEEeecCC
Q 019214 183 NCDLIIVDTSGRHKQEA-----ALFEEMR--QVSEATNPDLVIFVMDS-SIG---QAAFDQAQAFKQSVSVGAVIVTKMD 251 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~-----~~~~~l~--~~~~~~~~d~illvvda-~~~---~~~~~~~~~~~~~~~~~~lVinK~D 251 (344)
+++++|+||||...... .....+. .......+|.+++|+|+ +.+ .+.......+.....+..+|+||+|
T Consensus 130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~D 209 (315)
T 1jwy_B 130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLD 209 (315)
T ss_dssp SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTT
T ss_pred CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcc
Confidence 47899999999864210 1111121 11223468999999997 333 2223445555443445688999999
Q ss_pred CCCChhhHHHHHHHhCCCeEEEecCCCCCcC-cCCChHHHHHHHh---CCCChhHHHHHHHhhCCC
Q 019214 252 GHAKGGGALSAVAATKSPVIFIGTGEHMDEF-EVFDVKPFVSRLL---GMGDWSGFMDKIHEVVPM 313 (344)
Q Consensus 252 ~~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l-~~~~~~~~is~~~---g~g~i~~l~~~i~~~~~~ 313 (344)
...........+.. ....+ ..+.+...+|+.. |.| +.++++.+.+.++.
T Consensus 210 l~~~~~~~~~~~~~------------~~~~~~~~~~~v~~~sa~~~~~~~g-v~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 210 LMDKGTDAMEVLTG------------RVIPLTLGFIGVINRSQEDIIAKKS-IRESLKSEILYFKN 262 (315)
T ss_dssp SSCSSCCCHHHHTT------------SSSCCTTCEEECCCCCHHHHSSSCC-HHHHHHHHHHHHHT
T ss_pred cCCcchHHHHHHhC------------CCccCCCCeEEEecCChhhhccCCC-HHHHHHHHHHHHhC
Confidence 87543222233221 11111 1222344456666 788 99999998877654
No 61
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=99.34 E-value=1.8e-11 Score=106.43 Aligned_cols=142 Identities=19% Similarity=0.253 Sum_probs=88.4
Q ss_pred EEEEE-cCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcce--eccCCCCCHHHHHHHHHHHH
Q 019214 103 VIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPF--YGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 103 ii~iv-G~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~--~~~~~~~~~~~~~~~~l~~~ 179 (344)
+|+|+ +++||||||++.+||..+++.| +|++||+|++..... .+.. . .+|+ ... + .+..+
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~~~-~~~~-~---~l~~~vi~~----~-------~l~~l 64 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSATG-WGKR-G---SLPFKVVDE----R-------QAAKY 64 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHHHH-HHHH-S---CCSSEEEEG----G-------GHHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCHHH-HhcC-C---CCCcceeCH----H-------HHHHh
Confidence 56776 6669999999999999999999 999999999865431 1111 1 1221 110 0 23334
Q ss_pred HhCCCCEEEEcCCCC-CcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc--hhHHHHHHHHhc--cCCcCEEEeecCCCCC
Q 019214 180 KKENCDLIIVDTSGR-HKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QAAFDQAQAFKQ--SVSVGAVIVTKMDGHA 254 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~-~~~~~~~~~~l~~~~~~~~~d~illvvda~~~--~~~~~~~~~~~~--~~~~~~lVinK~D~~~ 254 (344)
...||+++|||||. ...... .....+|.+++|+.++.. .........+.. ..+ .++|+|++|...
T Consensus 65 -~~~yD~viiD~p~~~~~~~~~--------~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~-~~vv~N~~~~~~ 134 (209)
T 3cwq_A 65 -APKYQNIVIDTQARPEDEDLE--------ALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNR-FRILLTIIPPYP 134 (209)
T ss_dssp -GGGCSEEEEEEECCCSSSHHH--------HHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSS-EEEEECSBCCTT
T ss_pred -hhcCCEEEEeCCCCcCcHHHH--------HHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCC-EEEEEEecCCcc
Confidence 34799999999887 443211 112357999999998753 122223333333 233 589999999875
Q ss_pred -Ch-hhHHHHHHHhCCCeE
Q 019214 255 -KG-GGALSAVAATKSPVI 271 (344)
Q Consensus 255 -~~-~~~~~~~~~~~~pv~ 271 (344)
.. ....+.+...+.|+.
T Consensus 135 ~~~~~~~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 135 SKDGDEARQLLTTAGLPLF 153 (209)
T ss_dssp SCHHHHHHHHHHHTTCCBC
T ss_pred chHHHHHHHHHHHcCCchh
Confidence 43 334455555665543
No 62
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.34 E-value=1.3e-12 Score=126.46 Aligned_cols=163 Identities=18% Similarity=0.194 Sum_probs=92.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
....++++|+|||||||+++.|+ |....+++. .+.+++........
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~------g~~~~~v~~-----------~~gtT~d~~~~~i~----------------- 224 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAIL------NKERALVSP-----------IPGTTRDPVDDEVF----------------- 224 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHH------TSTTEEECC-----------CC------CCEEEE-----------------
T ss_pred cCceEEEECCCCCCHHHHHHHHh------CCcccccCC-----------CCCCcCCceEEEEE-----------------
Confidence 45789999999999999999999 887777765 22333222111110
Q ss_pred HhCCCCEEEEcCCCCCcchHHH---HH---HHHHhhhhcCCcEEEEEEcCCcchh--HHHHHHHHhccCCcCEEEeecCC
Q 019214 180 KKENCDLIIVDTSGRHKQEAAL---FE---EMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAFKQSVSVGAVIVTKMD 251 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~~~~---~~---~l~~~~~~~~~d~illvvda~~~~~--~~~~~~~~~~~~~~~~lVinK~D 251 (344)
..+.++.++||||........ .+ .++.......+|.+++|+|++.+.. .............+..+|+||+|
T Consensus 225 -~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~D 303 (439)
T 1mky_A 225 -IDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWD 303 (439)
T ss_dssp -ETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGG
T ss_pred -ECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcc
Confidence 114567899999974321100 00 0112222335799999999986522 22223333333345688899999
Q ss_pred CCCChhh----HHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 252 GHAKGGG----ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 252 ~~~~~~~----~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
+...... ....+.. ... .....+.+++|+++|.| +++|++.+.+.+
T Consensus 304 l~~~~~~~~~~~~~~~~~------------~~~-~~~~~~~~~~SA~~g~g-v~~l~~~i~~~~ 353 (439)
T 1mky_A 304 LVVHREKRYDEFTKLFRE------------KLY-FIDYSPLIFTSADKGWN-IDRMIDAMNLAY 353 (439)
T ss_dssp GSTTGGGCHHHHHHHHHH------------HCG-GGTTSCEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred CCCchhhHHHHHHHHHHH------------Hhc-cCCCCcEEEEECCCCCC-HHHHHHHHHHHH
Confidence 8654221 1111111 011 01223456788999999 999999988765
No 63
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=99.32 E-value=5.6e-12 Score=111.94 Aligned_cols=140 Identities=12% Similarity=0.086 Sum_probs=82.7
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHH--------------------HHHhh----------cc
Q 019214 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFD--------------------QLKQN----------AT 153 (344)
Q Consensus 104 i~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~--------------------~l~~~----------~~ 153 (344)
|+|.|++||||||++.+||..+++.|++|++||+|++ +.... .+... ..
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~-~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD-SCLGQTLGLSIEEAYAITPLIEMKDEIREKTGDGGLLILNPK 81 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT-SCHHHHTTCCHHHHHTSCCGGGCHHHHHHHHCSSSCCCSSCC
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC-cChHHHhCCCcccccccccchhHHHHHHhhccCCcccccCCc
Confidence 6678999999999999999999999999999999996 32211 11110 00
Q ss_pred c-----------CCcce-eccC------CCCC-HH-HHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcC
Q 019214 154 K-----------AKIPF-YGSY------TESD-PV-RIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATN 213 (344)
Q Consensus 154 ~-----------~~v~~-~~~~------~~~~-~~-~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~ 213 (344)
. .++.+ .... .... .. ..+.+.+..+....||+||||||+....... .....
T Consensus 82 l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~viiD~pp~~~~~~~--------~~l~~ 153 (254)
T 3kjh_A 82 VDGDLDKYGRYIDDKIFLIRMGEIKKGGSQCYCRENSFLGSVVSALFLDKKEAVVMDMGAGIEHLTR--------GTAKA 153 (254)
T ss_dssp CTTSGGGSSEESSSSEEEEECCCCCCCCSSCCHHHHHHHHHHHHHHHHTCCSEEEEEECTTCTTCCH--------HHHTT
T ss_pred hhccHHhcccccCCeEEEEEecccccCCCCCCcchHHHHHHHHHHhccCCCCEEEEeCCCcccHHHH--------HHHHH
Confidence 0 11111 1000 0011 11 3355666666356899999999876532211 11245
Q ss_pred CcEEEEEEcCCcc-hhHHHHHHHHhcc--CCcCEEEeecCCC
Q 019214 214 PDLVIFVMDSSIG-QAAFDQAQAFKQS--VSVGAVIVTKMDG 252 (344)
Q Consensus 214 ~d~illvvda~~~-~~~~~~~~~~~~~--~~~~~lVinK~D~ 252 (344)
+|.+++|+.++.. .........+... ....++|+||.+.
T Consensus 154 aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~ 195 (254)
T 3kjh_A 154 VDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRN 195 (254)
T ss_dssp CSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECC
T ss_pred CCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCC
Confidence 8999999998753 1111111112111 2335899999984
No 64
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=99.32 E-value=3.2e-11 Score=111.35 Aligned_cols=165 Identities=15% Similarity=0.117 Sum_probs=93.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhH-----------HHHHhh--------------cc
Q 019214 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAF-----------DQLKQN--------------AT 153 (344)
Q Consensus 99 ~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~-----------~~l~~~--------------~~ 153 (344)
.+.|+|+|.|+.||||||++.|||.+|++.|++|++||+||+..... +..... ..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~Dpq~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~ 125 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDSTFTLTGSLVPTVIDVLKDVDFHPEELRPEDFVFEG 125 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCTTHHHHTSCCCCHHHHHHHTTSCGGGCCHHHHCEEC
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccCCCCCcchhhHhhhccccccccHhHheeec
Confidence 35689999999999999999999999999999999999998643211 111000 00
Q ss_pred cCCcceeccCCCC----CHHHHHHHHHHHH----HhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCc
Q 019214 154 KAKIPFYGSYTES----DPVRIAVEGVETF----KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSI 225 (344)
Q Consensus 154 ~~~v~~~~~~~~~----~~~~~~~~~l~~~----~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~ 225 (344)
..++.+....... .........+..+ ..+.||++++|+||-..... + ......+|.+++|+.+..
T Consensus 126 ~~~i~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~D~v~iD~~~~~~~~~-~------~~al~aAd~viIvt~~e~ 198 (314)
T 3fwy_A 126 FNGVMCVEAGGPPAGTGCGGYVVGQTVKLLKQHHLLDDTDVVIFDVLGDVVCGG-F------AAPLQHADQAVVVTANDF 198 (314)
T ss_dssp GGGCEEEECCCCCTTCSCTTHHHHHHHHHHHHTTTTSSCSEEEEEECCSSCCGG-G------GGGGGTCSEEEEEECSSH
T ss_pred CCCeEEEeCCCCcccchhhhccHHHHHHHHHhcchhhcCceEeeccCCcchhhh-h------HhHHhhCCeEEEEeCCcH
Confidence 1112111111100 0011111222222 23579999999987533211 0 112335899999998864
Q ss_pred c--hhHHH---HHHHHhcc--CCcCEEEeecCCCCCChhhHHHHHHHhCCCeEEE
Q 019214 226 G--QAAFD---QAQAFKQS--VSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFI 273 (344)
Q Consensus 226 ~--~~~~~---~~~~~~~~--~~~~~lVinK~D~~~~~~~~~~~~~~~~~pv~~~ 273 (344)
. ..... ....+... .++.++|+|+.+... ...+.....+.|+...
T Consensus 199 ~Al~~~~~l~~~i~~~~~~~~~~l~GiI~n~~~~~~---~v~~~a~~~~~~~lg~ 250 (314)
T 3fwy_A 199 DSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRATD---EVDRFCKETNFRRLAH 250 (314)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCCH---HHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHhccCCCceEEEEEcCCCchh---HHHHHHHHhCCeEEEE
Confidence 2 11222 22333322 234578999876543 3445566678887654
No 65
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.32 E-value=1.5e-11 Score=111.36 Aligned_cols=144 Identities=18% Similarity=0.153 Sum_probs=82.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...|+++|.|||||||++++|+ |.+.. +.. .++.+..... ....
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~------g~~~~-v~~-----------~pg~tv~~~~--~~~~---------------- 46 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLIT------GHNQR-VGN-----------WPGVTVERKS--GLVK---------------- 46 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH------CCCCC-CCS-----------SSCCCCSCEE--EECT----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHH------CCCCc-ccC-----------CCCCcEEEEE--EEEe----------------
Confidence 3679999999999999999999 75422 111 1111111110 0000
Q ss_pred hCCCCEEEEcCCCCCcchH-HHHHHH-HHhhhhcCCcEEEEEEcCCcchhHHHHHHHHhccCCcCEEEeecCCCCCChh-
Q 019214 181 KENCDLIIVDTSGRHKQEA-ALFEEM-RQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGG- 257 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~-~~~~~l-~~~~~~~~~d~illvvda~~~~~~~~~~~~~~~~~~~~~lVinK~D~~~~~~- 257 (344)
. +..+.++||||...... ...+.+ +.......+|.+++|+|++...........+.+...+..+|+||+|+....+
T Consensus 47 ~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~ 125 (272)
T 3b1v_A 47 K-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIETGIPVTIALNMIDVLDGQGK 125 (272)
T ss_dssp T-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHHHHHHHHHHHHHTCSCEEEEEECHHHHHHTTC
T ss_pred c-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchHhHHHHHHHHHhcCCCEEEEEEChhhCCcCCc
Confidence 1 45789999999754321 011112 1222223689999999998654333333334333345588899999843211
Q ss_pred --hHHHHHHHhCCCeEEEe--cCCCCCc
Q 019214 258 --GALSAVAATKSPVIFIG--TGEHMDE 281 (344)
Q Consensus 258 --~~~~~~~~~~~pv~~~~--~g~~~~~ 281 (344)
.........+.|+..++ .|+++++
T Consensus 126 ~~~~~~l~~~lg~~vi~~SA~~g~gi~e 153 (272)
T 3b1v_A 126 KINVDKLSYHLGVPVVATSALKQTGVDQ 153 (272)
T ss_dssp CCCHHHHHHHHTSCEEECBTTTTBSHHH
T ss_pred HHHHHHHHHHcCCCEEEEEccCCCCHHH
Confidence 22344455688888777 5555543
No 66
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.30 E-value=6.4e-12 Score=118.45 Aligned_cols=159 Identities=23% Similarity=0.192 Sum_probs=86.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
.++++++|+|||||||+++.|+ |..+ .+.. ..+++++........
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~------~~~~-~~~~-----------~~~~T~d~~~~~i~~----------------- 223 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLT------GLTQ-KVDT-----------KLFTTMSPKRYAIPI----------------- 223 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHH------CC-----------------------CCSCEEEEEE-----------------
T ss_pred CcEEEEECCCCCCHHHHHHHHH------CCCc-cccC-----------CcccccCCEEEEEEE-----------------
Confidence 3569999999999999999999 7654 2222 223333221110100
Q ss_pred hCCCCEEEEcCCCCCc-chHHHHHHHHH-hhhhcCCcEEEEEEcCCcch--hH------HHHHHHHhccCCcCEEEeecC
Q 019214 181 KENCDLIIVDTSGRHK-QEAALFEEMRQ-VSEATNPDLVIFVMDSSIGQ--AA------FDQAQAFKQSVSVGAVIVTKM 250 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~-~~~~~~~~l~~-~~~~~~~d~illvvda~~~~--~~------~~~~~~~~~~~~~~~lVinK~ 250 (344)
.+.++.++||||... ....+.+..+. +.....+|.+++|+|++... .. .+.+..+.....+..+|.||+
T Consensus 224 -~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~ 302 (364)
T 2qtf_A 224 -NNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKI 302 (364)
T ss_dssp -TTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECG
T ss_pred -CCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECC
Confidence 145678999999632 12223333322 23345789999999987653 11 112222221223458889999
Q ss_pred CCCCChh-hHHHHH----HHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 251 DGHAKGG-GALSAV----AATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 251 D~~~~~~-~~~~~~----~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
|...... ...... ...+. ...+.+++|+++|+| ++.|++.|.+.+
T Consensus 303 Dl~~~~~~~~~~~~~~l~~~l~~---------------~~~~~~~~SA~~g~g-i~~L~~~I~~~l 352 (364)
T 2qtf_A 303 DKINGDLYKKLDLVEKLSKELYS---------------PIFDVIPISALKRTN-LELLRDKIYQLA 352 (364)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCS---------------CEEEEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHHHhcC---------------CCCcEEEEECCCCcC-HHHHHHHHHHHh
Confidence 9865421 111111 11100 000125578889999 999999988764
No 67
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=99.30 E-value=1.5e-11 Score=110.30 Aligned_cols=160 Identities=18% Similarity=0.170 Sum_probs=90.3
Q ss_pred CCeEEEEE-cCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhh---------c--c-------cCCccee
Q 019214 100 KPSVIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQN---------A--T-------KAKIPFY 160 (344)
Q Consensus 100 ~~~ii~iv-G~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~---------~--~-------~~~v~~~ 160 (344)
+.++|+|+ +.+||||||++.+||..+++.|++|++||+|++.... ..+... . . ..++.+.
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~-~~l~~~~~~~l~~~l~~~~~~~~i~~~~~l~vl 83 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQGNAT-SGLGVRAERGVYHLLQGEPLEGLVHPVDGFHLL 83 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCHHH-HHTTCCCSCCHHHHHTTCCGGGTCEEETTEEEE
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCCcCHH-HHhCCCCCCCHHHHHcCCCHHHHccccCCEEEE
Confidence 45788888 5669999999999999999999999999999974322 111000 0 0 1233332
Q ss_pred ccCCCCCHHHH---H-H--HHHHHHH-hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch--h---
Q 019214 161 GSYTESDPVRI---A-V--EGVETFK-KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--A--- 228 (344)
Q Consensus 161 ~~~~~~~~~~~---~-~--~~l~~~~-~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~--~--- 228 (344)
.. ....... . . ..+..+. ..+||+|||||||...... . .. ...+|.+++|+.++... .
T Consensus 84 p~--~~~~~~~~~~l~~~~~~l~~~l~~~~yD~iiiD~pp~~~~~~--~----~~--l~~aD~viiv~~~~~~s~~~~~~ 153 (257)
T 1wcv_1 84 PA--TPDLVGATVELAGAPTALREALRDEGYDLVLLDAPPSLSPLT--L----NA--LAAAEGVVVPVQAEYYALEGVAG 153 (257)
T ss_dssp CC--CTTHHHHHHHHTTCTTHHHHHCCCTTCSEEEEECCSSCCHHH--H----HH--HHHCSEEEEEEESSTHHHHHHHH
T ss_pred eC--ChhHHHHHHHHhhHHHHHHHHhcccCCCEEEEeCCCCCCHHH--H----HH--HHHCCeEEEEecCchHHHHHHHH
Confidence 21 1121111 0 0 1222221 1589999999988754221 1 11 12379999999987531 1
Q ss_pred HHHHHHHHh----ccCCcCEEEeecCCCCCChh-hHHHHHHH-hCCCe
Q 019214 229 AFDQAQAFK----QSVSVGAVIVTKMDGHAKGG-GALSAVAA-TKSPV 270 (344)
Q Consensus 229 ~~~~~~~~~----~~~~~~~lVinK~D~~~~~~-~~~~~~~~-~~~pv 270 (344)
..+....+. ...++.++|+|++|...... ...+.+.+ .+.|+
T Consensus 154 ~~~~l~~~~~~~~~~~~~~gvv~N~~~~~~~~~~~~~~~l~~~~~~~~ 201 (257)
T 1wcv_1 154 LLATLEEVRAGLNPRLRLLGILVTMYDGRTLLAQQVEAQLRAHFGEKV 201 (257)
T ss_dssp HHHHHHHHHHHTCTTCEEEEEEEESBCTTCSHHHHHHHHHHHHHGGGB
T ss_pred HHHHHHHHHHHhCCCceEEEEEEEeECCCcHHHHHHHHHHHHHccccc
Confidence 122222222 22334579999998765432 23333333 35443
No 68
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.28 E-value=2.4e-12 Score=107.96 Aligned_cols=160 Identities=19% Similarity=0.195 Sum_probs=89.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
+...|+++|++||||||+++.|. +.+... .. .+ ..+. ...... +
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~------~~~~~~-~~---~~--------~~~~-~~~~~~-----------------~ 50 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIR------HSKVTE-QE---AG--------GITQ-HIGAYQ-----------------V 50 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHH------TTCSSC-SS---CC--------SSST-TCCCCE-----------------E
T ss_pred CCCEEEEECCCCCCHHHHHHHHh------CCcccc-CC---CC--------ceeE-eeeEEE-----------------E
Confidence 44679999999999999999998 543321 00 00 0000 000000 0
Q ss_pred HhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc--hhHHHHHHHHhccCCcCEEEeecCCCCCCh-
Q 019214 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QAAFDQAQAFKQSVSVGAVIVTKMDGHAKG- 256 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~--~~~~~~~~~~~~~~~~~~lVinK~D~~~~~- 256 (344)
...+..+.++||||...... + .......+|.+++|+|++.+ ....+....+.....+..+|+||+|+....
T Consensus 51 ~~~~~~~~l~Dt~G~~~~~~-----~-~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~ 124 (178)
T 2lkc_A 51 TVNDKKITFLDTPGHEAFTT-----M-RARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEANP 124 (178)
T ss_dssp EETTEEEEESCCCSSSSSSC-----S-CCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSCH
T ss_pred EeCCceEEEEECCCCHHHHH-----H-HHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCCH
Confidence 01245678999999743221 0 01123357899999998764 333344444433334568899999997542
Q ss_pred hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 257 ~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
......+...+ ..........+.+.+|+++|+| +++++++|.+.+
T Consensus 125 ~~~~~~~~~~~---------~~~~~~~~~~~~~~~Sa~~~~g-v~~l~~~l~~~~ 169 (178)
T 2lkc_A 125 DRVMQELMEYN---------LVPEEWGGDTIFCKLSAKTKEG-LDHLLEMILLVS 169 (178)
T ss_dssp HHHHHHHTTTT---------CCBTTTTSSEEEEECCSSSSHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHhcC---------cChhHcCCcccEEEEecCCCCC-HHHHHHHHHHhh
Confidence 12222222111 0000111112456688999999 999999987765
No 69
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.28 E-value=1.1e-12 Score=114.89 Aligned_cols=176 Identities=15% Similarity=0.172 Sum_probs=100.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccC----CCCCHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSY----TESDPVRIAVEGV 176 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~----~~~~~~~~~~~~l 176 (344)
..+|+++|.+||||||++++++..+... .+++++..|+........+... +....... .... .....+.+
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~i~~d~~~~~d~~~~~~~----~~~~~~~~~~~~~~l~-~~~~~~~~ 111 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIACIAGDVIAKFDAERMEKH----GAKVVPLNTGKECHLD-AHLVGHAL 111 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEEEEEETTTHHHHHHHHTT----TCEEEEEECTTCSSCC-HHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEECCCCCCccHHHHHhc----CCcEEEecCCceEecc-HHHHHHHH
Confidence 4689999999999999999999887654 7889999988643333333221 11111111 1111 11123334
Q ss_pred HHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHH-HHHHHHhccCCcCEEEeecCCCCCC
Q 019214 177 ETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF-DQAQAFKQSVSVGAVIVTKMDGHAK 255 (344)
Q Consensus 177 ~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~-~~~~~~~~~~~~~~lVinK~D~~~~ 255 (344)
..+...++|++++||+|....... + ....+..+.++|+..+.... .....+ ..+..+|+||+|....
T Consensus 112 ~~l~~~~~d~~~id~~g~i~~~~s-------~--~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~iiv~NK~Dl~~~ 179 (226)
T 2hf9_A 112 EDLNLDEIDLLFIENVGNLICPAD-------F--DLGTHKRIVVISTTEGDDTIEKHPGIM---KTADLIVINKIDLADA 179 (226)
T ss_dssp TTSCGGGCSEEEEECCSCSSGGGG-------C--CCSCSEEEEEEEGGGCTTTTTTCHHHH---TTCSEEEEECGGGHHH
T ss_pred HHHhcCCCCEEEEeCCCCccCcch-------h--hhccCcEEEEEecCcchhhHhhhhhHh---hcCCEEEEeccccCch
Confidence 444344779999999996432110 1 12345677888864332111 111122 1346899999998532
Q ss_pred ----hhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 256 ----GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 256 ----~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
.......+...+ +..+.+.+|+++|+| ++++++.+.+.+
T Consensus 180 ~~~~~~~~~~~~~~~~----------------~~~~~~~~Sa~~g~g-v~~l~~~l~~~~ 222 (226)
T 2hf9_A 180 VGADIKKMENDAKRIN----------------PDAEVVLLSLKTMEG-FDKVLEFIEKSV 222 (226)
T ss_dssp HTCCHHHHHHHHHHHC----------------TTSEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC----------------CCCeEEEEEecCCCC-HHHHHHHHHHHH
Confidence 112222222111 122345577889999 999999887643
No 70
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.28 E-value=4.9e-12 Score=115.62 Aligned_cols=113 Identities=16% Similarity=0.108 Sum_probs=61.7
Q ss_pred CCCEEEEcCCCCCcch-----HH---HHHHHHHhhhhcCCc-EEEEEEcCCcch---hHHHHHHHHhccCCcCEEEeecC
Q 019214 183 NCDLIIVDTSGRHKQE-----AA---LFEEMRQVSEATNPD-LVIFVMDSSIGQ---AAFDQAQAFKQSVSVGAVIVTKM 250 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~-----~~---~~~~l~~~~~~~~~d-~illvvda~~~~---~~~~~~~~~~~~~~~~~lVinK~ 250 (344)
.+++.|+||||..... .. ....+. ......++ .+++|+|++.+. +....+..+.....+..+|+||+
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~ 202 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDML-MQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKL 202 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHH-HHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECG
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHH-HHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEcc
Confidence 3789999999975311 11 122221 11122455 455799987652 22234444443334568899999
Q ss_pred CCCCChhhHHHHHHHhCCCeEEEecCCCCCcCc-CCChHHHHHHHhCCCChhHHHHHHHh
Q 019214 251 DGHAKGGGALSAVAATKSPVIFIGTGEHMDEFE-VFDVKPFVSRLLGMGDWSGFMDKIHE 309 (344)
Q Consensus 251 D~~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~-~~~~~~~is~~~g~g~i~~l~~~i~~ 309 (344)
|...........+. .....+. .+.+.+.+|++.|.| ++++++.+.+
T Consensus 203 Dl~~~~~~~~~~~~------------~~~~~~~~~~~~v~~~SA~~~~g-i~~l~~~l~~ 249 (299)
T 2aka_B 203 DLMDEGTDARDVLE------------NKLLPLRRGYIGVVNRSQKDIDG-KKDITAALAA 249 (299)
T ss_dssp GGSCTTCCCHHHHT------------TCSSCCTTCEEECCCCCCBCTTS-CBCHHHHHHH
T ss_pred ccCCCCchHHHHHh------------CCcCcCCCCcEEEECCChhhccc-cccHHHHHHH
Confidence 98654321122221 1111110 123456678899999 9999888765
No 71
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.28 E-value=1e-10 Score=117.34 Aligned_cols=66 Identities=17% Similarity=0.258 Sum_probs=41.4
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc---------hhHHHHHHHHhc-cCCcCEEEeecCCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG---------QAAFDQAQAFKQ-SVSVGAVIVTKMDG 252 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~---------~~~~~~~~~~~~-~~~~~~lVinK~D~ 252 (344)
++.+.|+||||..... ..+ ......+|.+++|+|++.+ ....+....... ..++.++|+||+|.
T Consensus 244 ~~~~~iiDTPG~e~f~----~~~--~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl 317 (611)
T 3izq_1 244 RANFTIVDAPGHRDFV----PNA--IMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDN 317 (611)
T ss_dssp SCEEEEEECCSSSCHH----HHH--TTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTT
T ss_pred CceEEEEECCCCcccH----HHH--HHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccc
Confidence 6789999999985421 111 2334578999999999864 122222222222 22335778999998
Q ss_pred CC
Q 019214 253 HA 254 (344)
Q Consensus 253 ~~ 254 (344)
..
T Consensus 318 ~~ 319 (611)
T 3izq_1 318 VD 319 (611)
T ss_dssp TT
T ss_pred cc
Confidence 75
No 72
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.27 E-value=4.3e-12 Score=111.54 Aligned_cols=159 Identities=14% Similarity=0.110 Sum_probs=89.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
+...|+++|.+||||||+++.|. +.+.. +.. .++++.. +.+.. ..
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~------~~~~~-~~~-----------~~~~t~~-~~~~~-~~--------------- 72 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVS------RANVD-VQS-----------YSFTTKN-LYVGH-FD--------------- 72 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHT------TTCEE-EEC-----------C-----C-EEEEE-EE---------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHh------CCCCc-cCC-----------CCCccee-eeeee-ee---------------
Confidence 44789999999999999999998 66544 222 1111111 11000 00
Q ss_pred HhCCCCEEEEcCCCCCcch-----HHHHHHHHHhhhhcCCcEEEEEEcCCcch-----hHHHHHHHHhcc--CCcCEEEe
Q 019214 180 KKENCDLIIVDTSGRHKQE-----AALFEEMRQVSEATNPDLVIFVMDSSIGQ-----AAFDQAQAFKQS--VSVGAVIV 247 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~-----~~~~~~l~~~~~~~~~d~illvvda~~~~-----~~~~~~~~~~~~--~~~~~lVi 247 (344)
..+..+.|+||||..... ......+... ...+|.+++|+|++... ........+... ..+..+|+
T Consensus 73 -~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~ 149 (228)
T 2qu8_A 73 -HKLNKYQIIDTPGLLDRAFENRNTIEMTTITAL--AHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGF 149 (228)
T ss_dssp -ETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHH--HTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEE
T ss_pred -cCCCeEEEEECCCCcCcccchhhhHHHHHHHHh--hccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEE
Confidence 014678899999984311 0001112222 33578999999997641 122334444332 34558899
Q ss_pred ecCCCCCChh---h---HHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 248 TKMDGHAKGG---G---ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 248 nK~D~~~~~~---~---~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
||+|+..... . ....+.... ....+.+.+|+++|+| ++++++.|.+.+.
T Consensus 150 nK~Dl~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~SA~~g~g-i~~l~~~l~~~i~ 204 (228)
T 2qu8_A 150 NKIDKCNMDSLSIDNKLLIKQILDNV---------------KNPIKFSSFSTLTGVG-VEQAKITACELLK 204 (228)
T ss_dssp ECGGGCC--CCCHHHHHHHHHHHHHC---------------CSCEEEEECCTTTCTT-HHHHHHHHHHHHH
T ss_pred eCcccCCchhhHHHHHHHHHHHHHhc---------------CCCceEEEEecccCCC-HHHHHHHHHHHHH
Confidence 9999864311 1 111111100 0112345578889999 9999999988763
No 73
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=99.24 E-value=4.1e-10 Score=102.56 Aligned_cols=115 Identities=19% Similarity=0.175 Sum_probs=69.7
Q ss_pred eEEEEE-cCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHH--h-h-----c-ccCCc-ceeccC-----CC
Q 019214 102 SVIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLK--Q-N-----A-TKAKI-PFYGSY-----TE 165 (344)
Q Consensus 102 ~ii~iv-G~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~--~-~-----~-~~~~v-~~~~~~-----~~ 165 (344)
++|+|+ +.+||||||++.+||..|++.|++|++||+|+..+.....+. . + . ...++ .+.... ..
T Consensus 5 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~q~~l~~~l~~~~~~~~~~~~~~~~~l~~vl~~~~~~~~~~ 84 (286)
T 2xj4_A 5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDLRQRTSARFFENRRAWLDNKKIELPEPLALNLSDNDVALAER 84 (286)
T ss_dssp EEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHHHTCCCCCCEEECSSSCHHHHTTS
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCCCHHHHhCCChhHhHhccccCCCchheEeeCCCCCCcCh
Confidence 578887 556999999999999999999999999999994333221111 1 0 0 01122 221110 00
Q ss_pred CCH--HHHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCc
Q 019214 166 SDP--VRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSI 225 (344)
Q Consensus 166 ~~~--~~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~ 225 (344)
.+. ...+.+.+..+. .+||+|||||||..... . ......+|.+++|+.++.
T Consensus 85 ~~~~~~~~l~~~l~~l~-~~yD~viiD~p~~~~~~--~------~~~l~~aD~viiv~~~~~ 137 (286)
T 2xj4_A 85 PEEEQVAGFEAAFARAM-AECDFILIDTPGGDSAI--T------RMAHGRADLVVTPMNDSF 137 (286)
T ss_dssp CHHHHHHHHHHHHHHHH-HHCSEEEEECCSSCCHH--H------HHHHHTCSEEEEEEESSH
T ss_pred hhhhhHHHHHHHHHHHH-hcCCEEEEcCCCCccHH--H------HHHHHHCCEEEEEEcCCc
Confidence 000 112334444443 47999999998875321 1 111235799999998864
No 74
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.23 E-value=4e-11 Score=106.98 Aligned_cols=165 Identities=16% Similarity=0.143 Sum_probs=88.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
....|+++|.+||||||++|.|. |.++...+..+ ..++.........
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~------~~~~~~~~~~~----------~~~T~~~~~~~~~----------------- 66 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSIL------GQRRFFSRLGA----------TSVTRACTTGSRR----------------- 66 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHH------TSCCC-------------------CCSCEEEEEE-----------------
T ss_pred CceEEEEECCCCCcHHHHHHHHh------CCCCccccCCC----------CCccccEEEEEEE-----------------
Confidence 34679999999999999999999 87776544311 0111111111110
Q ss_pred HhCCCCEEEEcCCCCCcchHHH----HHHHHH-h-hhhcCCcEEEEEEcCCcc-hhHHHHHHHHhcc------CCcCEEE
Q 019214 180 KKENCDLIIVDTSGRHKQEAAL----FEEMRQ-V-SEATNPDLVIFVMDSSIG-QAAFDQAQAFKQS------VSVGAVI 246 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~~~~----~~~l~~-~-~~~~~~d~illvvda~~~-~~~~~~~~~~~~~------~~~~~lV 246 (344)
..+..+.|+||||........ ...+.. + .....+|.+++|+|++.. .........+... ..+.+++
T Consensus 67 -~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv 145 (247)
T 3lxw_A 67 -WDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVF 145 (247)
T ss_dssp -ETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEE
T ss_pred -ECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEE
Confidence 125678999999986543222 112211 1 123578999999998753 2222222222221 2345788
Q ss_pred eecCCCCCCh-h---------hHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 247 VTKMDGHAKG-G---------GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 247 inK~D~~~~~-~---------~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
.||+|+.... . .....+...+.+...+.. . ..++..+.| +.+|++.|.+.+.
T Consensus 146 ~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~~~~~~~------------~-~~~~~~~~~-v~~Ll~~i~~~~~ 207 (247)
T 3lxw_A 146 TRKEDLAGGSLHDYVSNTENRALRELVAECGGRVCAFDN------------R-ATGREQEAQ-VEQLLGMVEGLVL 207 (247)
T ss_dssp ECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCEEECCT------------T-CCHHHHHHH-HHHHHHHHHHHHH
T ss_pred EchHhcCCCCHHHHHhhcccHHHHHHHHHcCCeEEEEeC------------C-CCccccHHH-HHHHHHHHHHHHH
Confidence 9999985421 1 122333333433332211 1 013345677 8888888877764
No 75
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.23 E-value=6e-11 Score=100.33 Aligned_cols=156 Identities=19% Similarity=0.174 Sum_probs=88.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
+...|+++|++||||||+++++. +.....+.. ........+.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~------~~~~~~~~~-----------t~g~~~~~~~--------------------- 56 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLA------SEDISHITP-----------TQGFNIKSVQ--------------------- 56 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHC------CSCCEEEEE-----------ETTEEEEEEE---------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHh------cCCCCcccC-----------cCCeEEEEEE---------------------
Confidence 34679999999999999999998 654432221 0000000010
Q ss_pred HhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH---HHHHHhc----cCCcCEEEeecCCC
Q 019214 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ----SVSVGAVIVTKMDG 252 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~---~~~~~~~----~~~~~~lVinK~D~ 252 (344)
..++.+.++||||...... . . ......+|.+++|+|++....... ....+.. ...+..+|.||+|.
T Consensus 57 -~~~~~l~i~Dt~G~~~~~~-~---~--~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 129 (181)
T 1fzq_A 57 -SQGFKLNVWDIGGQRKIRP-Y---W--RSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL 129 (181)
T ss_dssp -ETTEEEEEEECSSCGGGHH-H---H--HHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTS
T ss_pred -ECCEEEEEEECCCCHHHHH-H---H--HHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCc
Confidence 0156778999999754321 1 1 112346899999999986532222 2222211 22355788999998
Q ss_pred CCChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 253 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 253 ~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
..... ..+.....+.. .... ...+.+.+|+++|+| ++++++++.+.+.
T Consensus 130 ~~~~~-~~~~~~~~~~~--------~~~~--~~~~~~~~Sa~~g~g-i~~l~~~l~~~~~ 177 (181)
T 1fzq_A 130 LTAAP-ASEIAEGLNLH--------TIRD--RVWQIQSCSALTGEG-VQDGMNWVCKNVN 177 (181)
T ss_dssp TTCCC-HHHHHHHTTGG--------GCCS--SCEEEEECCTTTCTT-HHHHHHHHHHTC-
T ss_pred ccCCC-HHHHHHHhCch--------hccC--CceEEEEccCCCCCC-HHHHHHHHHHHHH
Confidence 65421 11111111100 0000 011345678999999 9999999988764
No 76
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.22 E-value=2.3e-11 Score=102.74 Aligned_cols=151 Identities=15% Similarity=0.099 Sum_probs=86.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
+...|+++|.+||||||++++|. +.+..-... . .+.......
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~------~~~~~~~~~-----------t-----~~~~~~~~~---------------- 61 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFS------MNEVVHTSP-----------T-----IGSNVEEIV---------------- 61 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHH------TTSCEEEEC-----------C-----SSSSCEEEE----------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHh------cCCCCccCC-----------c-----CceeeEEEE----------------
Confidence 45789999999999999999999 655422211 0 011000000
Q ss_pred HhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHhc----cCCcCEEEeecCCC
Q 019214 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ----SVSVGAVIVTKMDG 252 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~~----~~~~~~lVinK~D~ 252 (344)
..++.+.++||||...... + .......+|.+++|+|++..... ......+.. ...+..+|+||+|+
T Consensus 62 -~~~~~~~i~Dt~G~~~~~~-----~-~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 134 (181)
T 2h17_A 62 -INNTRFLMWDIGGQESLRS-----S-WNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 134 (181)
T ss_dssp -ETTEEEEEEEESSSGGGTC-----G-GGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred -ECCEEEEEEECCCCHhHHH-----H-HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCc
Confidence 0156788999999743210 0 01123468999999999865322 222222221 22455788999998
Q ss_pred CCCh--hhHHHHHHHhCCCeEEEecCCCCCcCcC-CChHHHHHHHhCCCChhHHHHHHHhh
Q 019214 253 HAKG--GGALSAVAATKSPVIFIGTGEHMDEFEV-FDVKPFVSRLLGMGDWSGFMDKIHEV 310 (344)
Q Consensus 253 ~~~~--~~~~~~~~~~~~pv~~~~~g~~~~~l~~-~~~~~~is~~~g~g~i~~l~~~i~~~ 310 (344)
.... ....... + ...... ..+.+.+|+++|+| +++++++|.+.
T Consensus 135 ~~~~~~~~i~~~~---~-----------~~~~~~~~~~~~~~Sa~~g~g-i~~l~~~l~~~ 180 (181)
T 2h17_A 135 KECMTVAEISQFL---K-----------LTSIKDHQWHIQACCALTGEG-LCQGLEWMMSR 180 (181)
T ss_dssp TTCCCHHHHHHHT---T-----------GGGCCSSCEEEEECBTTTTBT-HHHHHHHHHTC
T ss_pred ccCCCHHHHHHHh---C-----------cccccCCceEEEEccCCCCcC-HHHHHHHHHhh
Confidence 6531 1111111 0 000110 11345688999999 99999988653
No 77
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.22 E-value=2.8e-11 Score=102.46 Aligned_cols=159 Identities=18% Similarity=0.098 Sum_probs=89.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...|+++|++||||||+++.|+ |.... +.. .+..+.... .....
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~------~~~~~-~~~-----------~~~~t~~~~--~~~~~---------------- 50 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALT------GENVY-IGN-----------WPGVTVEKK--EGEFE---------------- 50 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------TTCEE-EEE-----------CTTSCCEEE--EEEEE----------------
T ss_pred CCEEEEECCCCCCHHHHHHHHh------CCCcc-ccC-----------CCCeeccce--EEEEE----------------
Confidence 3679999999999999999999 65432 221 011111000 00000
Q ss_pred hCCCCEEEEcCCCCCcchHH-HHHHH-HHhhhhcCCcEEEEEEcCCcchhHHHHHHHHhccCCcCEEEeecCCCCCCh--
Q 019214 181 KENCDLIIVDTSGRHKQEAA-LFEEM-RQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKG-- 256 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~-~~~~l-~~~~~~~~~d~illvvda~~~~~~~~~~~~~~~~~~~~~lVinK~D~~~~~-- 256 (344)
..++.+.++||||....... ..+.+ ........+|.+++|+|++...........+.....+..+|.||+|.....
T Consensus 51 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~ 130 (188)
T 2wjg_A 51 YNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAKSLGI 130 (188)
T ss_dssp ETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGGHHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTC
T ss_pred eCCcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchhHHHHHHHHHHHHhcCCCEEEEEEhhhccccccc
Confidence 11567789999997543110 00111 112222357899999998754333333333333334557889999974221
Q ss_pred -hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCCC
Q 019214 257 -GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMD 314 (344)
Q Consensus 257 -~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~~ 314 (344)
..........+. +.+.+|+++|+| ++++++.+.+.+...
T Consensus 131 ~~~~~~~~~~~~~------------------~~~~~Sa~~~~~-v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 131 EIDVDKLEKILGV------------------KVVPLSAAKKMG-IEELKKAISIAVKDK 170 (188)
T ss_dssp CCCHHHHHHHHTS------------------CEEECBGGGTBS-HHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHhCC------------------CeEEEEecCCCC-HHHHHHHHHHHHHhc
Confidence 111122222222 234467789999 999999998877654
No 78
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.21 E-value=6.5e-11 Score=98.69 Aligned_cols=153 Identities=12% Similarity=0.060 Sum_probs=79.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...|+++|++||||||+++.|. +........ + ...+.....+ . ..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~------~~~~~~~~~-~----------~~~~~~~~~~-~-~~---------------- 48 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFA------GKQERDLHE-Q----------LGEDVYERTL-T-VD---------------- 48 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH------CC-----CC-C----------SSSSEEEEEE-E-ET----------------
T ss_pred EEEEEEECCCCccHHHHHHHHh------cCCCccccC-c----------cccceeEEEE-E-EC----------------
Confidence 3579999999999999999998 654332211 0 0000000000 0 00
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHhc----cCCcCEEEeecCCCC
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ----SVSVGAVIVTKMDGH 253 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~~----~~~~~~lVinK~D~~ 253 (344)
...+.+.++||||....... .+.. .....+|.+++|+|.+..... ......+.. ...+..+|.||+|+.
T Consensus 49 ~~~~~~~~~D~~g~~~~~~~---~~~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~ 124 (175)
T 2nzj_A 49 GEDTTLVVVDTWEAEKLDKS---WSQE-SCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLA 124 (175)
T ss_dssp TEEEEEEEECCC-------C---HHHH-HTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCT
T ss_pred CEEEEEEEEecCCCCccchh---hhHH-hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhc
Confidence 01356789999997542101 1111 113357899999998864321 112222222 123457889999986
Q ss_pred CCh----hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 254 AKG----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 254 ~~~----~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
... ..........+. +.+.+|+++|+| +++++++|.+.+
T Consensus 125 ~~~~v~~~~~~~~~~~~~~------------------~~~~~Sa~~g~g-i~~l~~~l~~~~ 167 (175)
T 2nzj_A 125 RCREVSVEEGRACAVVFDC------------------KFIETSATLQHN-VAELFEGVVRQL 167 (175)
T ss_dssp TTCCSCHHHHHHHHHHHTS------------------EEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHcCC------------------eEEEEecCCCCC-HHHHHHHHHHHH
Confidence 431 111122222221 234567889999 999999987654
No 79
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.21 E-value=1.3e-10 Score=95.56 Aligned_cols=104 Identities=17% Similarity=0.121 Sum_probs=60.0
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHH---HHhc-cCCcCEEEeecCCCCCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQ---AFKQ-SVSVGAVIVTKMDGHAK 255 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~---~~~~-~~~~~~lVinK~D~~~~ 255 (344)
.+.+.++||||........ . .. ...+|.+++|+|++..... ..... .+.. ...+..+|+||+|....
T Consensus 50 ~~~~~~~D~~G~~~~~~~~-~---~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~ 123 (166)
T 2ce2_X 50 TCLLDILDTAGQEEYSAMR-D---QY--MRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAAR 123 (166)
T ss_dssp EEEEEEEECCCCSSCCHHH-H---HH--HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCC
T ss_pred EEEEEEEECCCchhhhHHH-H---Hh--hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhc
Confidence 4667899999976433211 1 11 2247899999998764221 11122 2221 12345789999998642
Q ss_pred ---hhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 256 ---GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 256 ---~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
...........+.|+. .+|+.+|.| ++++++.|.+.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~------------------~~Sa~~~~g-i~~l~~~l~~~~ 163 (166)
T 2ce2_X 124 TVESRQAQDLARSYGIPYI------------------ETSAKTRQG-VEDAFYTLVREI 163 (166)
T ss_dssp CSCHHHHHHHHHHHTCCEE------------------EECTTTCTT-HHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCeEE------------------EecCCCCCC-HHHHHHHHHHHH
Confidence 1222333343444333 346668888 999998887653
No 80
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=99.21 E-value=3.5e-10 Score=106.01 Aligned_cols=39 Identities=38% Similarity=0.505 Sum_probs=35.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcC
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~ 140 (344)
.++++.|++||||||++.+||..+++.|++|++||+|++
T Consensus 27 ~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~ 65 (349)
T 3ug7_A 27 KYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPA 65 (349)
T ss_dssp EEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCTT
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 555666999999999999999999999999999999994
No 81
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.21 E-value=1.1e-11 Score=116.36 Aligned_cols=115 Identities=15% Similarity=0.045 Sum_probs=61.1
Q ss_pred CCCEEEEcCCCCCcc------h--HHHHHHHHHhhhhcCCcEEEEEEcCCcch---hHHHHHHHHhccCCcCEEEeecCC
Q 019214 183 NCDLIIVDTSGRHKQ------E--AALFEEMRQVSEATNPDLVIFVMDSSIGQ---AAFDQAQAFKQSVSVGAVIVTKMD 251 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~------~--~~~~~~l~~~~~~~~~d~illvvda~~~~---~~~~~~~~~~~~~~~~~lVinK~D 251 (344)
.+++.|+||||+... . ...+..+.........+.+++|+|++.+. +....+..+.....+..+|+||+|
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~D 208 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLD 208 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGG
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEecccc
Confidence 478999999997541 1 11222221111112456777788876542 222344444433345688999999
Q ss_pred CCCChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHh
Q 019214 252 GHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (344)
Q Consensus 252 ~~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~ 309 (344)
...........+.. +....-..+.+.+.+|+..|.| ++++++.+.+
T Consensus 209 l~~~~~~~~~~~~~-----------~~~~l~~~~~~v~~~SA~~~~~-i~~l~~~l~~ 254 (353)
T 2x2e_A 209 LMDEGTDARDVLEN-----------KLLPLRRGYIGVVNRSQKDIDG-KKDITAALAA 254 (353)
T ss_dssp GSCTTCCCHHHHTT-----------CSSCCTTCEEECCCCCHHHHHT-TCCHHHHHHH
T ss_pred ccCcchhHHHHHhC-----------CcccccCCceEEEeCCcccccc-cccHHHHHHH
Confidence 87543211222221 1111001122345577888888 8888777765
No 82
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.20 E-value=2e-11 Score=101.39 Aligned_cols=154 Identities=18% Similarity=0.121 Sum_probs=86.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
+...|+++|++||||||+++++. +.+.. ...| + .+.......
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~------~~~~~--~~~~-------------t-~~~~~~~~~---------------- 47 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQ------VGEVV--TTIP-------------T-IGFNVETVT---------------- 47 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHH------HSSCC--CCCC-------------C-SSEEEEEEE----------------
T ss_pred CccEEEEECCCCCCHHHHHHHHh------cCCCC--CcCC-------------c-CccceEEEE----------------
Confidence 34679999999999999999997 32211 1100 0 011100000
Q ss_pred HhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHhc----cCCcCEEEeecCCC
Q 019214 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ----SVSVGAVIVTKMDG 252 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~~----~~~~~~lVinK~D~ 252 (344)
..++.+.++||||...... + .......+|.+++|+|++..... ......+.. ...+..+|+||+|.
T Consensus 48 -~~~~~~~~~Dt~G~~~~~~-----~-~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 120 (171)
T 1upt_A 48 -YKNLKFQVWDLGGLTSIRP-----Y-WRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDM 120 (171)
T ss_dssp -ETTEEEEEEEECCCGGGGG-----G-GGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred -ECCEEEEEEECCCChhhhH-----H-HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCC
Confidence 0156778999999753221 1 01123368999999999865322 222222221 23455888999998
Q ss_pred CCCh--hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 253 HAKG--GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 253 ~~~~--~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
.... ......... +.... ...+.+.+|+++|+| ++++++.+.+.+.
T Consensus 121 ~~~~~~~~~~~~~~~-----------~~~~~--~~~~~~~~Sa~~~~g-i~~l~~~l~~~i~ 168 (171)
T 1upt_A 121 EQAMTSSEMANSLGL-----------PALKD--RKWQIFKTSATKGTG-LDEAMEWLVETLK 168 (171)
T ss_dssp TTCCCHHHHHHHHTG-----------GGCTT--SCEEEEECCTTTCTT-HHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHhCc-----------hhccC--CceEEEECcCCCCcC-HHHHHHHHHHHHh
Confidence 6542 112111110 00000 011345678999999 9999999887653
No 83
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=99.19 E-value=1.1e-10 Score=110.07 Aligned_cols=42 Identities=31% Similarity=0.311 Sum_probs=37.6
Q ss_pred eEEEEE-cCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcch
Q 019214 102 SVIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG 143 (344)
Q Consensus 102 ~ii~iv-G~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~ 143 (344)
++|+|+ +++||||||++.+||..|++.|++|++||+|++.+.
T Consensus 2 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q~~~ 44 (361)
T 3pg5_A 2 RTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQCNA 44 (361)
T ss_dssp EEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCTT
T ss_pred eEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCCCCh
Confidence 577887 667999999999999999999999999999998654
No 84
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.19 E-value=9.3e-11 Score=96.75 Aligned_cols=152 Identities=20% Similarity=0.124 Sum_probs=85.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHhC
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 182 (344)
.|+++|++||||||+++++.. .+. .+..| +. +....... ..
T Consensus 2 ki~~~G~~~~GKssl~~~l~~------~~~--~~~~~-------------t~-~~~~~~~~-----------------~~ 42 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL------GEI--VTTIP-------------TI-GFNVETVE-----------------YK 42 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH------HCS--SCCCC-------------CS-SCCEEEEE-----------------CS
T ss_pred EEEEECCCCCCHHHHHHHHHc------CCc--CcccC-------------cC-ceeEEEEE-----------------EC
Confidence 489999999999999999983 211 01101 00 01000000 12
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHH---HHHHHHhc----cCCcCEEEeecCCCCCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQ----SVSVGAVIVTKMDGHAK 255 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~---~~~~~~~~----~~~~~~lVinK~D~~~~ 255 (344)
++.+.++||||..... .. .. .....+|.+++|+|++...... .....+.. ...+..+|.||+|+...
T Consensus 43 ~~~~~i~Dt~G~~~~~-~~---~~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 116 (164)
T 1r8s_A 43 NISFTVWDVGGQDKIR-PL---WR--HYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116 (164)
T ss_dssp SCEEEEEECCCCGGGH-HH---HH--HHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred CEEEEEEEcCCChhhH-HH---HH--HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC
Confidence 5778999999985432 11 11 1234689999999998653222 22222222 12455888999998654
Q ss_pred hhhHHHHHHHhCCCeEEEecCCCCCcCc-CCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 256 GGGALSAVAATKSPVIFIGTGEHMDEFE-VFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 256 ~~~~~~~~~~~~~pv~~~~~g~~~~~l~-~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
.. ........+ ..... ...+.+.+|+++|.| ++++++.|.+.+.
T Consensus 117 ~~-~~~~~~~~~-----------~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~i~ 161 (164)
T 1r8s_A 117 MN-AAEITDKLG-----------LHSLRHRNWYIQATCATSGDG-LYEGLDWLSNQLR 161 (164)
T ss_dssp CC-HHHHHHHTT-----------GGGCSSCCEEEEECBTTTTBT-HHHHHHHHHHHC-
T ss_pred CC-HHHHHHHhC-----------cccccCccEEEEEcccCCCcC-HHHHHHHHHHHHh
Confidence 21 111111111 00000 011345678999999 9999999988764
No 85
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.18 E-value=3.3e-11 Score=102.82 Aligned_cols=159 Identities=14% Similarity=0.112 Sum_probs=86.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...|+++|++||||||+++++. +.+...... ........+.
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~------~~~~~~~~~-----------t~~~~~~~~~---------------------- 63 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLK------NDRLATLQP-----------TWHPTSEELA---------------------- 63 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHH------HSCCCCCCC-----------CCSCEEEEEE----------------------
T ss_pred ccEEEEECCCCCCHHHHHHHHh------cCCCCcccc-----------CCCCCeEEEE----------------------
Confidence 3578999999999999999998 433221110 0000000000
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH---HHHHHhc----cCCcCEEEeecCCCC
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ----SVSVGAVIVTKMDGH 253 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~---~~~~~~~----~~~~~~lVinK~D~~ 253 (344)
..++.+.++||||...... + .......+|.+++|+|++....... ....+.. ...+..+|.||+|+.
T Consensus 64 ~~~~~~~i~Dt~G~~~~~~-----~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 137 (190)
T 1m2o_B 64 IGNIKFTTFDLGGHIQARR-----L-WKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAP 137 (190)
T ss_dssp ETTEEEEEEECCCSGGGTT-----S-GGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTST
T ss_pred ECCEEEEEEECCCCHHHHH-----H-HHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCc
Confidence 1156778999999753211 1 0111346899999999987633222 2222211 224558889999986
Q ss_pred CChhhHHHHHHHhCCCeEEEecCCCC-CcCcCCChHHHHHHHhCCCChhHHHHHHHhh
Q 019214 254 AKGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (344)
Q Consensus 254 ~~~~~~~~~~~~~~~pv~~~~~g~~~-~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~ 310 (344)
.... ..+.....+.+. ..++.. .. ....+.+.+|+++|+| +++++++|.+.
T Consensus 138 ~~~~-~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~Sa~~g~g-i~~l~~~l~~~ 189 (190)
T 1m2o_B 138 NAVS-EAELRSALGLLN---TTGSQRIEG-QRPVEVFMCSVVMRNG-YLEAFQWLSQY 189 (190)
T ss_dssp TCCC-HHHHHHHTTCSS---CCC---CCS-SCCEEEEECBTTTTBS-HHHHHHHHHTT
T ss_pred CCCC-HHHHHHHhCCcc---ccccccccc-cceEEEEEeECCcCCC-HHHHHHHHHhh
Confidence 5211 111222222221 111111 00 0112345689999999 99999998764
No 86
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.18 E-value=4.2e-11 Score=118.07 Aligned_cols=82 Identities=15% Similarity=0.161 Sum_probs=49.3
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchh--HHHHHHHHhccCCcCEEEeecCCCCCCh-hhH
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAFKQSVSVGAVIVTKMDGHAKG-GGA 259 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~--~~~~~~~~~~~~~~~~lVinK~D~~~~~-~~~ 259 (344)
++.+.|+||||........ ......+|.+++|+|++.+.. .............+..+|+||+|..... ...
T Consensus 81 ~~~i~liDTPG~~df~~~~------~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~~~~~ 154 (528)
T 3tr5_A 81 DYLINLLDTPGHADFTEDT------YRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRPSIEL 154 (528)
T ss_dssp TEEEEEECCCCSTTCCHHH------HHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSCHHHH
T ss_pred CEEEEEEECCCchhHHHHH------HHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHH
Confidence 6788999999986543322 122335899999999987632 2233333333334558899999986432 223
Q ss_pred H-HHHHHhCCCe
Q 019214 260 L-SAVAATKSPV 270 (344)
Q Consensus 260 ~-~~~~~~~~pv 270 (344)
+ +.....+.+.
T Consensus 155 l~ei~~~l~~~~ 166 (528)
T 3tr5_A 155 LDEIESILRIHC 166 (528)
T ss_dssp HHHHHHHHCCEE
T ss_pred HHHHHHhhCCCc
Confidence 3 3334455543
No 87
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.18 E-value=8.7e-11 Score=98.48 Aligned_cols=155 Identities=14% Similarity=0.078 Sum_probs=83.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
+...|+++|.+||||||++++|. +.+.......+ ..+..+.......
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~------~~~~~~~~~~~--------------t~~~~~~~~~~~~------------- 55 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFK------DGAFLAGTFIS--------------TVGIDFRNKVLDV------------- 55 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHH------HSCCCCCCCCC--------------CCSCEEEEEEEEE-------------
T ss_pred cceEEEEECcCCCCHHHHHHHHH------hCCCCCCCcCC--------------ceeeEEEEEEEEE-------------
Confidence 34679999999999999999998 33321111100 0111110000000
Q ss_pred HhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHh---ccCCcCEEEeecCCCC
Q 019214 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFK---QSVSVGAVIVTKMDGH 253 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~---~~~~~~~lVinK~D~~ 253 (344)
....+.+.++||||..... .+ .......+|.+++|+|++..... ......+. ....+..+|+||+|+.
T Consensus 56 ~~~~~~~~~~Dt~G~~~~~-----~~-~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 129 (180)
T 2g6b_A 56 DGVKVKLQMWDTAGQERFR-----SV-THAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSA 129 (180)
T ss_dssp TTEEEEEEEEECCCC--------------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTT
T ss_pred CCEEEEEEEEeCCCcHHHH-----HH-HHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccC
Confidence 0013567899999964321 11 11123468999999999865321 12222222 1234557889999986
Q ss_pred CCh----hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 254 AKG----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 254 ~~~----~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
... ..........+.| .+.+|+++|.| ++++++++.+.+.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~------------------~~~~Sa~~~~g-i~~l~~~l~~~~~ 173 (180)
T 2g6b_A 130 HERVVKREDGEKLAKEYGLP------------------FMETSAKTGLN-VDLAFTAIAKELK 173 (180)
T ss_dssp SCCCSCHHHHHHHHHHHTCC------------------EEECCTTTCTT-HHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHcCCe------------------EEEEeCCCCCC-HHHHHHHHHHHHH
Confidence 421 1222233323322 23457778999 9999999877653
No 88
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.17 E-value=2e-10 Score=95.20 Aligned_cols=152 Identities=16% Similarity=0.138 Sum_probs=84.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
..|+++|++||||||++++|. +.+.. . .+.+. ........+ . .. .
T Consensus 4 ~~i~v~G~~~~GKssli~~l~------~~~~~---~-~~~~t-----~~~~~~~~~---~-~~----------------~ 48 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFV------KGTFR---E-SYIPT-----VEDTYRQVI---S-CD----------------K 48 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHH------TCCCC---S-SCCCC-----SCEEEEEEE---E-ET----------------T
T ss_pred eEEEEECCCCCCHHHHHHHHH------cCCCC---C-CCCCC-----ccccEEEEE---E-EC----------------C
Confidence 569999999999999999998 53321 0 00000 000000000 0 00 0
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHH---HHHHhc--cCCcCEEEeecCCCC
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQ---AQAFKQ--SVSVGAVIVTKMDGH 253 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~---~~~~~~--~~~~~~lVinK~D~~ 253 (344)
..+.+.++||||........ .. ....+|.+++|+|++..... ... ...+.. ...+..+|+||+|+.
T Consensus 49 ~~~~~~~~Dt~G~~~~~~~~----~~--~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~ 122 (172)
T 2erx_A 49 SICTLQITDTTGSHQFPAMQ----RL--SISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122 (172)
T ss_dssp EEEEEEEEECCSCSSCHHHH----HH--HHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGG
T ss_pred EEEEEEEEECCCchhhHHHH----HH--hcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccc
Confidence 14567899999986543211 11 12247899999999864221 111 222221 123458899999985
Q ss_pred CCh----hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCC
Q 019214 254 AKG----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (344)
Q Consensus 254 ~~~----~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~ 313 (344)
... ..........+. +.+.+|+++|.| +++++++|.+.+..
T Consensus 123 ~~~~v~~~~~~~~~~~~~~------------------~~~~~Sa~~~~g-i~~l~~~l~~~~~~ 167 (172)
T 2erx_A 123 PSREVQSSEAEALARTWKC------------------AFMETSAKLNHN-VKELFQELLNLEKR 167 (172)
T ss_dssp GGCCSCHHHHHHHHHHHTC------------------EEEECBTTTTBS-HHHHHHHHHHTCCS
T ss_pred cccccCHHHHHHHHHHhCC------------------eEEEecCCCCcC-HHHHHHHHHHHHhh
Confidence 321 111122222221 234467789999 99999999987754
No 89
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.17 E-value=2.5e-11 Score=104.33 Aligned_cols=163 Identities=10% Similarity=0.030 Sum_probs=84.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...|+++|++||||||+++++. +.+...... ... .......
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~------~~~~~~~~~-----------t~~---~~~~~~~------------------- 65 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLK------DDRLGQHVP-----------TLH---PTSEELT------------------- 65 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHS------CC------C-----------CCC---CSCEEEE-------------------
T ss_pred CcEEEEECCCCCCHHHHHHHHh------cCCCCccCC-----------CCC---ceeEEEE-------------------
Confidence 3568999999999999999998 544321110 000 0000000
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHH---HHHHHHhc----cCCcCEEEeecCCCC
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQ----SVSVGAVIVTKMDGH 253 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~---~~~~~~~~----~~~~~~lVinK~D~~ 253 (344)
..++.+.++||||...... + .......+|.+++|+|++...... .....+.. ...+..+|.||+|+.
T Consensus 66 ~~~~~l~i~Dt~G~~~~~~-----~-~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 139 (198)
T 1f6b_A 66 IAGMTFTTFDLGGHIQARR-----V-WKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRP 139 (198)
T ss_dssp ETTEEEEEEEECC----CC-----G-GGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTST
T ss_pred ECCEEEEEEECCCcHhhHH-----H-HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCcc
Confidence 1156788999999642110 1 011133689999999998653222 22222221 123457889999986
Q ss_pred CCh--hhHHHHHHHhCCCeEEEecCCCCCc-CcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 254 AKG--GGALSAVAATKSPVIFIGTGEHMDE-FEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 254 ~~~--~~~~~~~~~~~~pv~~~~~g~~~~~-l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
... ....+.+... ++..-..+..+.+ .....+.+.+|+++|+| +++++++|.+.+
T Consensus 140 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g-v~~l~~~l~~~l 197 (198)
T 1f6b_A 140 EAISEERLREMFGLY--GQTTGKGSVSLKELNARPLEVFMCSVLKRQG-YGEGFRWMAQYI 197 (198)
T ss_dssp TCCCHHHHHHHHTCT--TTCCCSSCCCTTTCCSCCEEEEECBTTTTBS-HHHHHHHHHTTC
T ss_pred ccCCHHHHHHHhCcc--cccccccccccccccCceEEEEEEECCCCCC-HHHHHHHHHHhc
Confidence 421 1122221111 1000000000111 01122456689999999 999999987754
No 90
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.17 E-value=4.8e-11 Score=101.42 Aligned_cols=158 Identities=13% Similarity=0.021 Sum_probs=87.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
+...|+++|.+||||||+++.|. +.+.. . .+.+ ..+..+... .
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~------~~~~~---~-~~~~-----------t~~~~~~~~-~--------------- 63 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIA------SGQFN---E-DMIP-----------TVGFNMRKI-T--------------- 63 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHH------HSCCC---C-SCCC-----------CCSEEEEEE-E---------------
T ss_pred CccEEEEECCCCCCHHHHHHHHH------cCCCC---C-ccCC-----------CCceeEEEE-E---------------
Confidence 34679999999999999999998 33221 0 0000 011111100 0
Q ss_pred HhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHH---HHHHHHhc----cCCcCEEEeecCCC
Q 019214 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQ----SVSVGAVIVTKMDG 252 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~---~~~~~~~~----~~~~~~lVinK~D~ 252 (344)
..++.+.++||||..... .... .....+|.+++|+|++...... .....+.. ...+..+|+||+|+
T Consensus 64 -~~~~~~~l~Dt~G~~~~~----~~~~--~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 136 (188)
T 1zd9_A 64 -KGNVTIKLWDIGGQPRFR----SMWE--RYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDL 136 (188)
T ss_dssp -ETTEEEEEEEECCSHHHH----TTHH--HHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTS
T ss_pred -eCCEEEEEEECCCCHhHH----HHHH--HHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCC
Confidence 125678899999964211 1111 1124689999999998643222 22222221 22345788999998
Q ss_pred CCChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCC
Q 019214 253 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (344)
Q Consensus 253 ~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~ 313 (344)
..... ........+. ..... ...+.+.+|+++|.| +++++++|.+.+..
T Consensus 137 ~~~~~-~~~~~~~~~~--------~~~~~--~~~~~~~~SA~~g~g-v~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 137 PGALD-EKELIEKMNL--------SAIQD--REICCYSISCKEKDN-IDITLQWLIQHSKS 185 (188)
T ss_dssp TTCCC-HHHHHHHTTG--------GGCCS--SCEEEEECCTTTCTT-HHHHHHHHHHTCC-
T ss_pred ccCCC-HHHHHHHhCh--------hhhcc--CCeeEEEEECCCCCC-HHHHHHHHHHHHHh
Confidence 65421 1111121110 00000 112345689999999 99999999987753
No 91
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.16 E-value=3.1e-11 Score=101.66 Aligned_cols=154 Identities=19% Similarity=0.115 Sum_probs=85.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
+...|+++|++||||||+++.+. +.+..-... . .+.......
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~------~~~~~~~~~--t--------------~~~~~~~~~---------------- 58 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQ------IGEVVTTKP--T--------------IGFNVETLS---------------- 58 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC------CSEEEEECS--S--------------TTCCEEEEE----------------
T ss_pred CccEEEEECCCCCCHHHHHHHHh------cCCcCccCC--c--------------CccceEEEE----------------
Confidence 34789999999999999999998 554421111 0 011000000
Q ss_pred HhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHhc----cCCcCEEEeecCCC
Q 019214 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ----SVSVGAVIVTKMDG 252 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~~----~~~~~~lVinK~D~ 252 (344)
..++.+.++||||...... + .......+|.+++|+|++..... ......+.. ...+..+|+||+|+
T Consensus 59 -~~~~~~~i~Dt~G~~~~~~-----~-~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 131 (183)
T 1moz_A 59 -YKNLKLNVWDLGGQTSIRP-----Y-WRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQ 131 (183)
T ss_dssp -ETTEEEEEEEEC----CCT-----T-GGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTS
T ss_pred -ECCEEEEEEECCCCHhHHH-----H-HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCC
Confidence 0156778999999753211 0 01123367899999998765322 222233222 22355788999998
Q ss_pred CCChhhHHHHHHHhCCCeEEEecCCCCCcCc-CCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 253 HAKGGGALSAVAATKSPVIFIGTGEHMDEFE-VFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 253 ~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~-~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
..... ..+.....+ ...+. ...+.+.+|+++|+| +++++++|.+.+
T Consensus 132 ~~~~~-~~~i~~~~~-----------~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 178 (183)
T 1moz_A 132 PGALS-ASEVSKELN-----------LVELKDRSWSIVASSAIKGEG-ITEGLDWLIDVI 178 (183)
T ss_dssp TTCCC-HHHHHHHTT-----------TTTCCSSCEEEEEEBGGGTBT-HHHHHHHHHHHH
T ss_pred CCCCC-HHHHHHHhC-----------cccccCCceEEEEccCCCCcC-HHHHHHHHHHHH
Confidence 65321 111111111 01111 112446689999999 999999988765
No 92
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.16 E-value=4.1e-11 Score=100.34 Aligned_cols=152 Identities=16% Similarity=0.132 Sum_probs=84.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...|+++|++||||||++++|. +.+...... +. .+..+....... .
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~------~~~~~~~~~------------~~---~~~~~~~~~~~~-------------~ 54 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFA------DNTFSGSYI------------TT---IGVDFKIRTVEI-------------N 54 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHC------SCC---CCT------------TT---BSEEEEEEEEEE-------------T
T ss_pred ceEEEEECCCCCCHHHHHHHHh------cCCCCCccC------------CC---ceeEEEEEEEEE-------------C
Confidence 3679999999999999999998 544321111 00 011110000000 0
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH---HHHHHhcc--CCcCEEEeecCCCCCC
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQS--VSVGAVIVTKMDGHAK 255 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~---~~~~~~~~--~~~~~lVinK~D~~~~ 255 (344)
...+.+.++||||...... + .......+|.+++|+|++....... ....+... ..+..+|+||+|+...
T Consensus 55 ~~~~~~~i~Dt~G~~~~~~-----~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 128 (181)
T 3tw8_B 55 GEKVKLQIWDTAGQERFRT-----I-TSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPER 128 (181)
T ss_dssp TEEEEEEEEEETTGGGCSS-----C-CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGG
T ss_pred CEEEEEEEEcCCCchhhhh-----h-HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchh
Confidence 0135678999999532110 0 0112346899999999987532222 22223222 2345788999997542
Q ss_pred h----hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 256 G----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 256 ~----~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
. ..........+.| .+.+|+.+|+| ++++++.|.+.+
T Consensus 129 ~~~~~~~~~~~~~~~~~~------------------~~~~Sa~~~~g-i~~l~~~l~~~~ 169 (181)
T 3tw8_B 129 KVVETEDAYKFAGQMGIQ------------------LFETSAKENVN-VEEMFNCITELV 169 (181)
T ss_dssp CCSCHHHHHHHHHHHTCC------------------EEECBTTTTBS-HHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCe------------------EEEEECCCCCC-HHHHHHHHHHHH
Confidence 1 1222333333322 33467778999 999999988765
No 93
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.16 E-value=8.8e-12 Score=119.54 Aligned_cols=159 Identities=19% Similarity=0.142 Sum_probs=89.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
....|+++|.+|+||||++++|. +.+...++. .+.++...........
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~------~~~~~~~~~-----------~~gtT~d~~~~~~~~~--------------- 80 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALV------GQNVSIVSD-----------YAGTTTDPVYKSMELH--------------- 80 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSC------C------------------------CCCCEEEEEET---------------
T ss_pred CCEEEEEECCCCCCHHHHHHHHH------cCCCCccCC-----------CCCeeeeeEEEEEEEC---------------
Confidence 45789999999999999999998 666554443 2222222211111010
Q ss_pred HhCCCCEEEEcCCCCCcchH---HHHHHHHHhhhhcCCcEEEEEEcCCcchhHHHHHHHHhccCCcCEEEeecCCCCCCh
Q 019214 180 KKENCDLIIVDTSGRHKQEA---ALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKG 256 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~~---~~~~~l~~~~~~~~~d~illvvda~~~~~~~~~~~~~~~~~~~~~lVinK~D~~~~~ 256 (344)
....+.++||||...... ...... ......+|.+++|+|++...........+.....+..+|+||+|.....
T Consensus 81 --~~~~l~liDTpG~~d~~~l~~~~~~~~--~~~l~~aD~vllVvD~~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~ 156 (423)
T 3qq5_A 81 --PIGPVTLVDTPGLDDVGELGRLRVEKA--RRVFYRADCGILVTDSAPTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEK 156 (423)
T ss_dssp --TTEEEEEEECSSTTCCCTTCCCCHHHH--HHHHTSCSEEEEECSSSCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCC
T ss_pred --CCCeEEEEECcCCCcccchhHHHHHHH--HHHHhcCCEEEEEEeCCChHHHHHHHHHHHhcCCCEEEEEeCcCCCCcc
Confidence 022678999999853221 001111 1223468999999999444444444444444444568899999986543
Q ss_pred hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 257 ~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
.. +...... + .+ ..+.+.+|+++|+| ++++++.|.+.+
T Consensus 157 ~~--~~~~~l~---------~---~~--g~~v~~vSAktg~g-I~eL~~~L~~~l 194 (423)
T 3qq5_A 157 AE--ELKGLYE---------S---RY--EAKVLLVSALQKKG-FDDIGKTISEIL 194 (423)
T ss_dssp CT--HHHHHSS---------C---CT--TCCCCCCSSCCTTS-TTTHHHHHHHHS
T ss_pred HH--HHHHHHH---------H---Hc--CCCEEEEECCCCCC-HHHHHHHHHHhh
Confidence 22 1111100 1 11 12446688899999 999999999988
No 94
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.16 E-value=3.3e-10 Score=105.12 Aligned_cols=38 Identities=26% Similarity=0.432 Sum_probs=35.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCc
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~ 139 (344)
.++++.|++||||||++.+||..+++.|++|++||+|+
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 52 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP 52 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 56666699999999999999999999999999999999
No 95
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.16 E-value=1.4e-10 Score=96.02 Aligned_cols=106 Identities=18% Similarity=0.089 Sum_probs=61.3
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHH---HHHHHHhc---cCCcCEEEeecCCCCCCh
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQ---SVSVGAVIVTKMDGHAKG 256 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~---~~~~~~~~---~~~~~~lVinK~D~~~~~ 256 (344)
++.+.++||||...... . . ......+|.+++|+|++...... .....+.. ...+..+|.||+|.....
T Consensus 54 ~~~~~~~D~~G~~~~~~-~---~--~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~ 127 (170)
T 1r2q_A 54 TVKFEIWDTAGQERYHS-L---A--PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKR 127 (170)
T ss_dssp EEEEEEEEECCSGGGGG-G---H--HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC
T ss_pred EEEEEEEeCCCcHHhhh-h---h--HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcccc
Confidence 46778999999753221 1 1 11134689999999998653221 12222222 123446677999985321
Q ss_pred ----hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCC
Q 019214 257 ----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (344)
Q Consensus 257 ----~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~ 313 (344)
..........+. +.+.+|+++|+| +++++++|.+.+..
T Consensus 128 ~~~~~~~~~~~~~~~~------------------~~~~~Sa~~g~g-i~~l~~~i~~~~~~ 169 (170)
T 1r2q_A 128 AVDFQEAQSYADDNSL------------------LFMETSAKTSMN-VNEIFMAIAKKLPK 169 (170)
T ss_dssp CSCHHHHHHHHHHTTC------------------EEEECCTTTCTT-HHHHHHHHHHTSCC
T ss_pred ccCHHHHHHHHHHcCC------------------eEEEEeCCCCCC-HHHHHHHHHHHHhh
Confidence 122222222221 234467889999 99999999887643
No 96
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.16 E-value=8.5e-11 Score=99.42 Aligned_cols=158 Identities=20% Similarity=0.207 Sum_probs=85.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHhC
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 182 (344)
.|+++|.+||||||+++++. +.+.. .+. .+..+.....+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~------~~~~~-~~~-----------~~~~t~~~~~~~---------------------- 42 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLT------GKKVR-RGK-----------RPGVTRKIIEIE---------------------- 42 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHH------SCCCS-SSS-----------STTCTTSCEEEE----------------------
T ss_pred EEEEECCCCCCHHHHHHHHh------CcCCc-cCC-----------CCCccceeEEEe----------------------
Confidence 58999999999999999998 54321 111 111111111100
Q ss_pred CCCEEEEcCCCCCcch------HHHHHH-HHHhh-h-hcCCcEEEEEEcCCcchhH-------------HHHHHHHhccC
Q 019214 183 NCDLIIVDTSGRHKQE------AALFEE-MRQVS-E-ATNPDLVIFVMDSSIGQAA-------------FDQAQAFKQSV 240 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~------~~~~~~-l~~~~-~-~~~~d~illvvda~~~~~~-------------~~~~~~~~~~~ 240 (344)
-..+.++||||..... .+.... ..... . ....+.++.|+|++..... ...........
T Consensus 43 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (190)
T 2cxx_A 43 WKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELD 122 (190)
T ss_dssp ETTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTT
T ss_pred cCCEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcC
Confidence 1156899999953211 111111 11111 1 3346788999998653222 11122222223
Q ss_pred CcCEEEeecCCCCCChhhHH-HHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 241 SVGAVIVTKMDGHAKGGGAL-SAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 241 ~~~~lVinK~D~~~~~~~~~-~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
.+..+|.||+|......... ......+.|. . ....+.+.+|+++|.| ++++++.+.+.+.
T Consensus 123 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~--~~~~~~~~~Sa~~~~~-v~~l~~~l~~~~~ 183 (190)
T 2cxx_A 123 IPTIVAVNKLDKIKNVQEVINFLAEKFEVPL---------S--EIDKVFIPISAKFGDN-IERLKNRIFEVIR 183 (190)
T ss_dssp CCEEEEEECGGGCSCHHHHHHHHHHHHTCCG---------G--GHHHHEEECCTTTCTT-HHHHHHHHHHHHH
T ss_pred CceEEEeehHhccCcHHHHHHHHHHHhhhhh---------h--ccCCcEEEEecCCCCC-HHHHHHHHHHhcc
Confidence 45588999999976532222 2233333210 0 0001235578899999 9999999887653
No 97
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.16 E-value=3.3e-11 Score=102.45 Aligned_cols=155 Identities=15% Similarity=0.092 Sum_probs=88.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
+...|+++|.+||||||++++|. +.+.......+ ..+.......
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~------~~~~~~~~~~~--------------t~~~~~~~~~---------------- 63 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLK------PSNAQSQNILP--------------TIGFSIEKFK---------------- 63 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTS------CGGGCCSSCCC--------------CSSEEEEEEE----------------
T ss_pred CccEEEEECCCCCCHHHHHHHHh------cCCCCCCCcCC--------------ccceeEEEEE----------------
Confidence 45789999999999999999998 54421111100 0111110000
Q ss_pred HhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHH---HHHHHHhc------cCCcCEEEeecC
Q 019214 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQ------SVSVGAVIVTKM 250 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~---~~~~~~~~------~~~~~~lVinK~ 250 (344)
..++.+.++||||...... + .......+|.+++|+|++...... .....+.. ...+..+|+||+
T Consensus 64 -~~~~~~~l~Dt~G~~~~~~-----~-~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 136 (190)
T 2h57_A 64 -SSSLSFTVFDMSGQGRYRN-----L-WEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKM 136 (190)
T ss_dssp -CSSCEEEEEEECCSTTTGG-----G-GGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECT
T ss_pred -ECCEEEEEEECCCCHHHHH-----H-HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCc
Confidence 1257789999999754221 1 011234689999999998653222 22222221 123457889999
Q ss_pred CCCCCh--hhHHHHHHHhCCCeEEEecCCCCCcCc-CCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 251 DGHAKG--GGALSAVAATKSPVIFIGTGEHMDEFE-VFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 251 D~~~~~--~~~~~~~~~~~~pv~~~~~g~~~~~l~-~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
|+.... ......+.. ..+. ...+.+.+|+++|+| ++++++.|.+.+.
T Consensus 137 Dl~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~i~ 186 (190)
T 2h57_A 137 DLRDAVTSVKVSQLLCL--------------ENIKDKPWHICASDAIKGEG-LQEGVDWLQDQIQ 186 (190)
T ss_dssp TSTTCCCHHHHHHHHTG--------------GGCCSSCEEEEECBTTTTBT-HHHHHHHHHHHC-
T ss_pred CcccCCCHHHHHHHhCh--------------hhccCCceEEEEccCCCCcC-HHHHHHHHHHHHH
Confidence 996532 112122110 0111 112345678899999 9999999988764
No 98
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.16 E-value=1.1e-10 Score=98.80 Aligned_cols=155 Identities=15% Similarity=0.117 Sum_probs=86.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
+...|+++|.+||||||++++|. +.+.. ...+. .+.......
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~------~~~~~--~~~~t--------------~~~~~~~~~---------------- 56 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFS------MNEVV--HTSPT--------------IGSNVEEIV---------------- 56 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHH------TTSCE--EEECC--------------SCSSCEEEE----------------
T ss_pred CccEEEEECCCCCCHHHHHHHHh------cCCCC--cCcCC--------------CccceEEEE----------------
Confidence 34679999999999999999999 54433 11110 001000000
Q ss_pred HhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchh---HHHHHHHHhc----cCCcCEEEeecCCC
Q 019214 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQAQAFKQ----SVSVGAVIVTKMDG 252 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~---~~~~~~~~~~----~~~~~~lVinK~D~ 252 (344)
..++.+.++||||....... .. .....+|.+++|+|++.... .......+.. ...+..+|+||+|+
T Consensus 57 -~~~~~~~i~Dt~G~~~~~~~----~~--~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 129 (187)
T 1zj6_A 57 -INNTRFLMWDIGGQESLRSS----WN--TYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 129 (187)
T ss_dssp -ETTEEEEEEECCC----CGG----GH--HHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTS
T ss_pred -ECCEEEEEEECCCCHhHHHH----HH--HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCC
Confidence 01567889999997432110 01 11346899999999986532 2222222222 22455888999998
Q ss_pred CCCh--hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCC
Q 019214 253 HAKG--GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (344)
Q Consensus 253 ~~~~--~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~ 313 (344)
.... ......+... .+.. ...+.+.+|+++|+| +++++++|.+.+..
T Consensus 130 ~~~~~~~~i~~~~~~~-----------~~~~--~~~~~~~~Sa~~g~g-i~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 130 KECMTVAEISQFLKLT-----------SIKD--HQWHIQACCALTGEG-LCQGLEWMMSRLKI 178 (187)
T ss_dssp TTCCCHHHHHHHHTGG-----------GCCS--SCEEEEECBTTTTBT-HHHHHHHHHHHHCC
T ss_pred cCCCCHHHHHHHhChh-----------hhcC--CCcEEEEccCCCCcC-HHHHHHHHHHHHHH
Confidence 6532 1121221100 0000 011345678899999 99999999887643
No 99
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=99.15 E-value=6.1e-10 Score=103.52 Aligned_cols=39 Identities=31% Similarity=0.254 Sum_probs=35.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcC
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~ 140 (344)
+++++.|++||||||++.+||..+++.|++|++||+|++
T Consensus 20 ~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~ 58 (329)
T 2woo_A 20 KWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA 58 (329)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 566667999999999999999999999999999999986
No 100
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.15 E-value=2.2e-10 Score=94.46 Aligned_cols=150 Identities=13% Similarity=0.034 Sum_probs=80.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
..|+++|++||||||++++|. +.+.. .. +.+ +............ .
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~------~~~~~--~~--~~~---------t~~~~~~~~~~~~----------------~ 49 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFM------YDEFV--ED--YEP---------TKADSYRKKVVLD----------------G 49 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHH------HSCCC--SC--CCT---------TCCEEEEEEEEET----------------T
T ss_pred EEEEEECCCCCCHHHHHHHHH------hCccC--CC--CCC---------CcceEEEEEEEEC----------------C
Confidence 579999999999999999998 43311 10 000 0000000000000 0
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHH---HHhc-cCCcCEEEeecCCCCC
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQ---AFKQ-SVSVGAVIVTKMDGHA 254 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~---~~~~-~~~~~~lVinK~D~~~ 254 (344)
..+.+.++||||...... . .... ...+|.+++|+|++..... ..... .... ...+..+|+||+|...
T Consensus 50 ~~~~~~l~D~~G~~~~~~-~---~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 123 (168)
T 1u8z_A 50 EEVQIDILDTAGQEDYAA-I---RDNY--FRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 123 (168)
T ss_dssp EEEEEEEEECCC---CHH-H---HHHH--HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGG
T ss_pred EEEEEEEEECCCcchhHH-H---HHHH--hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccc
Confidence 145788999999754321 1 1111 2247899999999864321 11112 2211 1234588999999854
Q ss_pred C----hhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 255 K----GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 255 ~----~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
. ...........+. +.+.+|+++|.| ++++++++.+.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~------------------~~~~~Sa~~~~g-i~~l~~~l~~~i 165 (168)
T 1u8z_A 124 KRQVSVEEAKNRADQWNV------------------NYVETSAKTRAN-VDKVFFDLMREI 165 (168)
T ss_dssp GCCSCHHHHHHHHHHHTC------------------EEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred cCccCHHHHHHHHHHcCC------------------eEEEeCCCCCCC-HHHHHHHHHHHH
Confidence 2 1122223332222 234467778999 999998887643
No 101
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.15 E-value=1e-11 Score=104.20 Aligned_cols=156 Identities=13% Similarity=0.104 Sum_probs=79.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
+...|+++|++||||||+++.+. +.... . .+ .+...............
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~------~~~~~---~-~~--------~~~~~~~~~~~~~~~~~-------------- 54 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYV------NDKYS---Q-QY--------KATIGADFLTKEVTVDG-------------- 54 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHH------HSCCC---T-TC-----------CCCSCEEEEECCSS--------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHH------hCcCC---c-cc--------CCccceEEEEEEEEEcC--------------
Confidence 34679999999999999999998 32211 0 00 00000000000000000
Q ss_pred HhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHhc-------cCCcCEEEeec
Q 019214 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ-------SVSVGAVIVTK 249 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~~-------~~~~~~lVinK 249 (344)
...+.+.++||||..... .+ .......+|.+++|+|++..... ......+.. ...+..+|+||
T Consensus 55 -~~~~~~~l~Dt~G~~~~~-----~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 127 (182)
T 1ky3_A 55 -DKVATMQVWDTAGQERFQ-----SL-GVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127 (182)
T ss_dssp -SCCEEEEEECCC----------------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEEC
T ss_pred -CcEEEEEEEECCCChHhh-----hh-hHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEEC
Confidence 014567899999964221 11 11123468999999999865321 112222211 22345889999
Q ss_pred CCCCCCh----hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 250 MDGHAKG----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 250 ~D~~~~~----~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
+|..... ......+... ....+.+.+|+++|+| ++++++.|.+.+
T Consensus 128 ~Dl~~~~~~v~~~~~~~~~~~----------------~~~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 176 (182)
T 1ky3_A 128 IDAEESKKIVSEKSAQELAKS----------------LGDIPLFLTSAKNAIN-VDTAFEEIARSA 176 (182)
T ss_dssp TTSCGGGCCSCHHHHHHHHHH----------------TTSCCEEEEBTTTTBS-HHHHHHHHHHHH
T ss_pred CccccccccCCHHHHHHHHHh----------------cCCCeEEEEecCCCCC-HHHHHHHHHHHH
Confidence 9984321 1111111110 0112334567889999 999999887654
No 102
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.15 E-value=4.3e-11 Score=102.03 Aligned_cols=152 Identities=14% Similarity=0.127 Sum_probs=85.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceec--cCCCCCHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYG--SYTESDPVRIAVEGVET 178 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~--~~~~~~~~~~~~~~l~~ 178 (344)
...|+++|++||||||++++|. +.+.. . .+ ....+..+.. ....
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~------~~~~~---~-~~-----------~~~~~~~~~~~~~~~~------------- 68 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFV------QDHFD---H-NI-----------SPTIGASFMTKTVPCG------------- 68 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHH------HCCCC---T-TC-----------CCCSSEEEEEEEEECS-------------
T ss_pred ceEEEEECcCCCCHHHHHHHHh------cCCCC---C-Cc-----------CCCcceeEEEEEEEeC-------------
Confidence 4679999999999999999998 33210 0 00 0001111100 0000
Q ss_pred HHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHH---HHHHHHhc---cCCcCEEEeecCCC
Q 019214 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQ---SVSVGAVIVTKMDG 252 (344)
Q Consensus 179 ~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~---~~~~~~~~---~~~~~~lVinK~D~ 252 (344)
...+.+.++||||...... . . ......+|.+++|+|++...... .....+.. ...+..+|+||+|+
T Consensus 69 --~~~~~~~i~Dt~G~~~~~~-~---~--~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl 140 (192)
T 2fg5_A 69 --NELHKFLIWDTAGQERFHS-L---A--PMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDL 140 (192)
T ss_dssp --SSEEEEEEEEECCSGGGGG-G---T--HHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred --CEEEEEEEEcCCCchhhHh-h---h--HHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccc
Confidence 0146788999999643221 1 0 11133689999999998653222 12222222 12455788999998
Q ss_pred CCC----hhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCC
Q 019214 253 HAK----GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (344)
Q Consensus 253 ~~~----~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~ 313 (344)
... ...........+ .+.+.+|+++|.| ++++++.|.+.+..
T Consensus 141 ~~~~~v~~~~~~~~~~~~~------------------~~~~~~Sa~~~~g-i~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 141 SDIREVPLKDAKEYAESIG------------------AIVVETSAKNAIN-IEELFQGISRQIPP 186 (192)
T ss_dssp GGGCCSCHHHHHHHHHTTT------------------CEEEECBTTTTBS-HHHHHHHHHHTCC-
T ss_pred ccccccCHHHHHHHHHHcC------------------CEEEEEeCCCCcC-HHHHHHHHHHHHHh
Confidence 531 112222222222 1234567889999 99999999987753
No 103
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.14 E-value=8.5e-11 Score=97.08 Aligned_cols=151 Identities=11% Similarity=0.032 Sum_probs=82.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
..|+++|.+||||||+++.+. +.+.. . .+.+ +............ .
T Consensus 4 ~ki~v~G~~~~GKssli~~l~------~~~~~---~-~~~~---------t~~~~~~~~~~~~----------------~ 48 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFV------QGIFV---E-KYDP---------TIEDSYRKQVEVD----------------C 48 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHH------HCCCC---C-SCCC---------CSEEEEEEEEESS----------------S
T ss_pred eEEEEECCCCCCHHHHHHHHH------cCCCC---C-CCCC---------CccceEEEEEEEC----------------C
Confidence 468999999999999999998 32210 0 0000 0000000000001 0
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchh---HHHHHHHHh----ccCCcCEEEeecCCCCC
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQAQAFK----QSVSVGAVIVTKMDGHA 254 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~---~~~~~~~~~----~~~~~~~lVinK~D~~~ 254 (344)
..+.+.++||||........ . .. ...+|.+++|+|++.... .......+. ....+..+|+||+|...
T Consensus 49 ~~~~~~l~D~~G~~~~~~~~-~---~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 122 (167)
T 1c1y_A 49 QQCMLEILDTAGTEQFTAMR-D---LY--MKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122 (167)
T ss_dssp CEEEEEEEEECSSCSSTTHH-H---HH--HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGG
T ss_pred EEEEEEEEECCChHHHHHHH-H---HH--hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccc
Confidence 14567899999975432111 1 11 224789999999876421 112222221 11234578899999854
Q ss_pred Ch----hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 255 KG----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 255 ~~----~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
.. .......... ...+.+.+|+++|.| +++++++|.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~g-i~~l~~~l~~~i 165 (167)
T 1c1y_A 123 ERVVGKEQGQNLARQW-----------------CNCAFLESSAKSKIN-VNEIFYDLVRQI 165 (167)
T ss_dssp GCCSCHHHHHHHHHHT-----------------TSCEEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHc-----------------cCCcEEEecCCCCCC-HHHHHHHHHHHH
Confidence 21 1122222211 012345578889999 999999987653
No 104
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.14 E-value=1.9e-10 Score=96.13 Aligned_cols=151 Identities=22% Similarity=0.140 Sum_probs=84.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceec---cCCCCCHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYG---SYTESDPVRIAVEGVE 177 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~---~~~~~~~~~~~~~~l~ 177 (344)
...|+++|++||||||++++|. +.+.. . ...+. .+..+.. ....
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~------~~~~~---~---------~~~~t---~~~~~~~~~~~~~~------------ 52 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFA------QETFG---K---------QYKQT---IGLDFFLRRITLPG------------ 52 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH------GGGTT---H---------HHHHT---TTSSEEEEEEEETT------------
T ss_pred eEEEEEECcCCCCHHHHHHHHH------hCcCC---C---------CCCCc---eeEEEEEEEEEeCC------------
Confidence 4679999999999999999998 33210 0 00110 1111110 0000
Q ss_pred HHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHhc------cCCcCEEEee
Q 019214 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ------SVSVGAVIVT 248 (344)
Q Consensus 178 ~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~~------~~~~~~lVin 248 (344)
...+.+.++||||........ ......+|.+++|+|++..... ......+.. ..++..+|.|
T Consensus 53 ---~~~~~~~~~Dt~G~~~~~~~~------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~n 123 (178)
T 2hxs_A 53 ---NLNVTLQIWDIGGQTIGGKML------DKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGN 123 (178)
T ss_dssp ---TEEEEEEEEECTTCCTTCTTH------HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEE
T ss_pred ---CCEEEEEEEECCCCccccchh------hHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEE
Confidence 013678899999975422111 1113468999999999865321 122222221 2233478899
Q ss_pred cCCCCCC----hhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 249 KMDGHAK----GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 249 K~D~~~~----~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
|+|+... ...........+.| .+.+|+++|+| ++++++.|.+.+.
T Consensus 124 K~Dl~~~~~~~~~~~~~~~~~~~~~------------------~~~~Sa~~~~g-i~~l~~~l~~~~~ 172 (178)
T 2hxs_A 124 KIDLEHMRTIKPEKHLRFCQENGFS------------------SHFVSAKTGDS-VFLCFQKVAAEIL 172 (178)
T ss_dssp CGGGGGGCSSCHHHHHHHHHHHTCE------------------EEEECTTTCTT-HHHHHHHHHHHHT
T ss_pred ccccccccccCHHHHHHHHHHcCCc------------------EEEEeCCCCCC-HHHHHHHHHHHHH
Confidence 9998542 11222233333322 23467778999 9999999887654
No 105
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.14 E-value=2.3e-10 Score=96.58 Aligned_cols=150 Identities=15% Similarity=0.099 Sum_probs=81.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
..|+++|++||||||+++.|. +... ... +.+ +............ .
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~------~~~~--~~~--~~~---------t~~~~~~~~~~~~----------------~ 49 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLI------QNHF--VDE--YDP---------TIEDSYRKQVVID----------------G 49 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHH------HSSC--CCC--CCT---------TCCEEEEEEEEET----------------T
T ss_pred EEEEEECCCCCCHHHHHHHHH------hCCC--CCC--CCC---------CchheEEEEEEEC----------------C
Confidence 579999999999999999998 3331 111 000 0000000000000 0
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHhc----cCCcCEEEeecCCCCC
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ----SVSVGAVIVTKMDGHA 254 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~~----~~~~~~lVinK~D~~~ 254 (344)
..+.+.++||||...... . .... ...+|.+++|+|++..... ......+.. ...+..+|+||+|+..
T Consensus 50 ~~~~~~i~Dt~G~~~~~~-~---~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 123 (189)
T 4dsu_A 50 ETCLLDILDTAGQEEYSA-M---RDQY--MRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123 (189)
T ss_dssp EEEEEEEEECCCC---CT-T---HHHH--HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS
T ss_pred cEEEEEEEECCCcHHHHH-H---HHHH--HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc
Confidence 134567899999643221 1 1111 2247899999999864221 112222221 1235578899999864
Q ss_pred Ch---hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 255 KG---GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 255 ~~---~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
.. ..........+.| .+.+|+.+|.| ++++++.+.+.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~------------------~~~~Sa~~g~g-i~~l~~~l~~~~ 164 (189)
T 4dsu_A 124 RTVDTKQAQDLARSYGIP------------------FIETSAKTRQG-VDDAFYTLVREI 164 (189)
T ss_dssp CSSCHHHHHHHHHHHTCC------------------EEECCTTTCTT-HHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCe------------------EEEEeCCCCCC-HHHHHHHHHHHH
Confidence 32 2222333333332 23457778999 999999988766
No 106
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.13 E-value=1.1e-10 Score=99.02 Aligned_cols=150 Identities=15% Similarity=0.067 Sum_probs=80.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
..|+++|.+||||||++++|+ +.... . .+.+ +............ .
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~------~~~~~--~--~~~~---------t~~~~~~~~~~~~----------------~ 66 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLI------QNHFV--D--EYDP---------TIEDSYRKQVVID----------------G 66 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHH------HSSCC--S--CCCT---------TCCEEEEEEEEET----------------T
T ss_pred eEEEEECcCCCCHHHHHHHHH------cCCCc--c--ccCC---------ccceEEEEEEEEC----------------C
Confidence 579999999999999999998 33211 0 0000 0000000000000 0
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHH---HHH---HHHhc-cCCcCEEEeecCCCCC
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQA---QAFKQ-SVSVGAVIVTKMDGHA 254 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~---~~~---~~~~~-~~~~~~lVinK~D~~~ 254 (344)
..+++.++||||..... .+. ......+|.+++|+|++...... ... ..+.. ...+..+|+||+|+..
T Consensus 67 ~~~~~~l~Dt~G~~~~~-----~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 67 ETCLLDILDTAGQEEYS-----AMR-DQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT 140 (190)
T ss_dssp EEEEEEEEECCC-----------------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred EEEEEEEEECCChHHHH-----HHH-HHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc
Confidence 14668899999964321 111 11133689999999988653211 111 22221 1234588999999864
Q ss_pred C---hhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 255 K---GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 255 ~---~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
. ...........+.| .+.+|+.+|.| +++++++|.+.+
T Consensus 141 ~~~~~~~~~~~~~~~~~~------------------~~~~Sa~~~~g-i~~l~~~l~~~~ 181 (190)
T 3con_A 141 RTVDTKQAHELAKSYGIP------------------FIETSAKTRQG-VEDAFYTLVREI 181 (190)
T ss_dssp CCSCHHHHHHHHHHHTCC------------------EEECCTTTCTT-HHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHcCCe------------------EEEEeCCCCCC-HHHHHHHHHHHH
Confidence 2 12223333333332 23456778899 999999887765
No 107
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.13 E-value=4e-11 Score=99.40 Aligned_cols=152 Identities=15% Similarity=0.139 Sum_probs=83.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
..|+++|++||||||+++++. +.+.. .. +. ...+..+...... ...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~------~~~~~---~~-~~-----------~~~~~~~~~~~~~-------------~~~ 52 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFV------EDSFD---PN-IN-----------PTIGASFMTKTVQ-------------YQN 52 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHH------HSCCC---TT-CC-----------CCCSEEEEEEEEE-------------ETT
T ss_pred eEEEEECcCCCCHHHHHHHHH------cCCCC---CC-CC-----------CceeEEEEEEEEE-------------ECC
Confidence 579999999999999999998 33210 00 00 0001110000000 001
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHh---ccCCcCEEEeecCCCCCC
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFK---QSVSVGAVIVTKMDGHAK 255 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~---~~~~~~~lVinK~D~~~~ 255 (344)
..+.+.++||||...... . . ......+|.+++|+|++..... ......+. ....+..+|.||+|....
T Consensus 53 ~~~~~~~~Dt~G~~~~~~-~---~--~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~ 126 (170)
T 1z0j_A 53 ELHKFLIWDTAGLERFRA-L---A--PMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126 (170)
T ss_dssp EEEEEEEEEECCSGGGGG-G---T--HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGG
T ss_pred eEEEEEEEcCCCchhhhc-c---c--HhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccc
Confidence 146778999999743221 1 0 1113467999999999865322 11222222 222344677899998542
Q ss_pred h----hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 256 G----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 256 ~----~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
. ..........+ .+.+.+|+++|.| ++++++.|.+.+.
T Consensus 127 ~~v~~~~~~~~~~~~~------------------~~~~~~Sa~~~~~-i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 127 REVMERDAKDYADSIH------------------AIFVETSAKNAIN-INELFIEISRRIP 168 (170)
T ss_dssp CCSCHHHHHHHHHHTT------------------CEEEECBTTTTBS-HHHHHHHHHHHCC
T ss_pred cccCHHHHHHHHHHcC------------------CEEEEEeCCCCcC-HHHHHHHHHHHHh
Confidence 1 11112222212 1234567789999 9999999988764
No 108
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.13 E-value=2.7e-10 Score=102.91 Aligned_cols=120 Identities=18% Similarity=0.170 Sum_probs=69.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...|+++|.+||||||+++.|. |.++..++. ...++.........
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~------~~~~~~~~~-----------~~~~t~~~~~~~~~------------------ 83 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSII------GERVVSISP-----------FQSEGPRPVMVSRS------------------ 83 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH------TSCCSCCCS-----------SSCCCSSCEEEEEE------------------
T ss_pred CeEEEEECCCCCCHHHHHHHHh------CCCcccccC-----------CCCcceeeEEEEEe------------------
Confidence 4679999999999999999999 766544433 11111111111110
Q ss_pred hCCCCEEEEcCCCCCcch---HHHHHHHHHhhhhcCCcEEEEEEcCCcc---hhHHHHHHHHhccC-----CcCEEEeec
Q 019214 181 KENCDLIIVDTSGRHKQE---AALFEEMRQVSEATNPDLVIFVMDSSIG---QAAFDQAQAFKQSV-----SVGAVIVTK 249 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~---~~~~~~l~~~~~~~~~d~illvvda~~~---~~~~~~~~~~~~~~-----~~~~lVinK 249 (344)
..++.+.|+||||..... ......+........+|.+++|+|+... .........+.... .+..+|+||
T Consensus 84 ~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK 163 (270)
T 1h65_A 84 RAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTH 163 (270)
T ss_dssp ETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEEC
T ss_pred eCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEEC
Confidence 125678999999985432 2333333332223357899999776432 12223333332211 245889999
Q ss_pred CCCCCC
Q 019214 250 MDGHAK 255 (344)
Q Consensus 250 ~D~~~~ 255 (344)
+|....
T Consensus 164 ~Dl~~~ 169 (270)
T 1h65_A 164 AQFSPP 169 (270)
T ss_dssp CSCCCG
T ss_pred cccCCc
Confidence 998643
No 109
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.13 E-value=5.5e-11 Score=120.90 Aligned_cols=114 Identities=15% Similarity=0.072 Sum_probs=67.8
Q ss_pred CCCEEEEcCCCCCcch-----H---HHHHH-HHHhhhhcCCcEEEEEEcCCcc---hhHHHHHHHHhccCCcCEEEeecC
Q 019214 183 NCDLIIVDTSGRHKQE-----A---ALFEE-MRQVSEATNPDLVIFVMDSSIG---QAAFDQAQAFKQSVSVGAVIVTKM 250 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~-----~---~~~~~-l~~~~~~~~~d~illvvda~~~---~~~~~~~~~~~~~~~~~~lVinK~ 250 (344)
..+++||||||+.... . ..... +..... ..+|.+++|+|++.+ .+....+..+.....+.++|+||+
T Consensus 149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~-~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKi 227 (772)
T 3zvr_A 149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT-KENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKL 227 (772)
T ss_dssp CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT-STTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECT
T ss_pred CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh-cCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCc
Confidence 4578999999986521 1 12222 222222 467999999999864 233345555555445678999999
Q ss_pred CCCCChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHh
Q 019214 251 DGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (344)
Q Consensus 251 D~~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~ 309 (344)
|.............. +.......+.+.+.+|+..|.| ++.|++.|.+
T Consensus 228 Dlv~~~~~~~~il~~-----------~~~~l~lg~~~VV~iSA~~G~G-vdeL~eaI~~ 274 (772)
T 3zvr_A 228 DLMDEGTDARDVLEN-----------KLLPLRRGYIGVVNRSQKDIDG-KKDITAALAA 274 (772)
T ss_dssp TSSCTTCCSHHHHTT-----------CSSCCSSCEEECCCCCCEESSS-SEEHHHHHHH
T ss_pred ccCCcchhhHHHHHH-----------HhhhhhccCCceEEeccccccc-chhHHHHHHH
Confidence 997653322222210 1111001233556678888888 8888888876
No 110
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.13 E-value=3.8e-11 Score=102.51 Aligned_cols=155 Identities=19% Similarity=0.129 Sum_probs=87.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
....|+++|.+||||||++++|. +.+...++..+. .+...... .
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~------~~~~~~~~~~~t--------------~~~~~~~~-~--------------- 59 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVK------PAQSSSKHITAT--------------VGYNVETF-E--------------- 59 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHS------CCC----CCCCC--------------SSEEEEEE-E---------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHh------cCCCcccccccc--------------cceeEEEE-E---------------
Confidence 45789999999999999999998 655443221110 11111110 0
Q ss_pred HhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHH---HHHHHHhcc-----------CCcCEE
Q 019214 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQS-----------VSVGAV 245 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~---~~~~~~~~~-----------~~~~~l 245 (344)
..++.+.|+||||...... + .......+|.+++|+|++...... .....+... ..+..+
T Consensus 60 -~~~~~~~i~Dt~G~~~~~~-----~-~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piil 132 (199)
T 4bas_A 60 -KGRVAFTVFDMGGAKKFRG-----L-WETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLF 132 (199)
T ss_dssp -ETTEEEEEEEECCSGGGGG-----G-GGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEE
T ss_pred -eCCEEEEEEECCCCHhHHH-----H-HHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEE
Confidence 1267789999999853221 1 011134689999999998753222 222222211 335588
Q ss_pred EeecCCCCCCh--hhHHHHHHHhCCCeEEEecCCCC-CcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 246 IVTKMDGHAKG--GGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 246 VinK~D~~~~~--~~~~~~~~~~~~pv~~~~~g~~~-~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
|.||+|+.... ......+.. ... .. ...+.+.+|+++|+| ++++++.|.+.+
T Consensus 133 v~NK~Dl~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~~Sa~~g~g-v~~l~~~l~~~~ 187 (199)
T 4bas_A 133 FANKMDAAGAKTAAELVEILDL-----------TTLMGD--HPFVIFASNGLKGTG-VHEGFSWLQETA 187 (199)
T ss_dssp EEECTTSTTCCCHHHHHHHHTH-----------HHHHTT--SCEEEEECBTTTTBT-HHHHHHHHHHHH
T ss_pred EEECcCCCCCCCHHHHHHHhcc-----------hhhccC--CeeEEEEeeCCCccC-HHHHHHHHHHHH
Confidence 89999986542 111111100 000 00 111335578889999 999999988765
No 111
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.13 E-value=1.2e-10 Score=99.00 Aligned_cols=152 Identities=15% Similarity=0.051 Sum_probs=83.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...|+++|++||||||++++|. +.+... ...+ ..+..+....... .
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~------~~~~~~-~~~~--------------~~~~~~~~~~~~~-------------~ 61 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFA------DDTYTE-SYIS--------------TIGVDFKIRTIEL-------------D 61 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------HSCCCS-CCCC--------------CSSEEEEEEEEEE-------------T
T ss_pred ceEEEEECcCCCCHHHHHHHHH------cCCCCC-CCCC--------------cccceEEEEEEEE-------------C
Confidence 4579999999999999999998 322110 0000 0011100000000 0
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHh---ccCCcCEEEeecCCCCC
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFK---QSVSVGAVIVTKMDGHA 254 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~---~~~~~~~lVinK~D~~~ 254 (344)
...+.+.|+||||........ ......+|.+++|+|++..... ......+. ....+..+|+||+|+..
T Consensus 62 ~~~~~~~i~Dt~G~~~~~~~~------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~ 135 (196)
T 3tkl_A 62 GKTIKLQIWDTAGQERFRTIT------SSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT 135 (196)
T ss_dssp TEEEEEEEEEECCSGGGCTTH------HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred CEEEEEEEEECCCcHhhhhhH------HHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc
Confidence 013567899999964322111 1113468999999999864221 12222222 22335578899999854
Q ss_pred Ch----hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 255 KG----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 255 ~~----~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
.. ..........+.|+ +.+|+++|+| ++++++.|.+.+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~------------------~~~Sa~~g~g-v~~l~~~l~~~i 177 (196)
T 3tkl_A 136 KKVVDYTTAKEFADSLGIPF------------------LETSAKNATN-VEQSFMTMAAEI 177 (196)
T ss_dssp TCCSCHHHHHHHHHHTTCCE------------------EEECTTTCTT-HHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHcCCcE------------------EEEeCCCCCC-HHHHHHHHHHHH
Confidence 31 12223333333332 3356778888 998888877654
No 112
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=99.13 E-value=4.6e-10 Score=105.38 Aligned_cols=39 Identities=26% Similarity=0.236 Sum_probs=35.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHH--HcCCccEEeecCcC
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQ--KKGWKPALVCADTF 140 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~--~~g~~v~iv~~D~~ 140 (344)
.++++.|++||||||++.+||..++ +.|++|++||+|+.
T Consensus 19 ~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~~ 59 (354)
T 2woj_A 19 KWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPA 59 (354)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 4566669999999999999999999 89999999999983
No 113
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=99.13 E-value=5.3e-10 Score=104.01 Aligned_cols=41 Identities=29% Similarity=0.221 Sum_probs=37.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCc
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~ 141 (344)
.+++++.|++||||||++.+||..+++.|++|++||+|+..
T Consensus 16 ~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~~ 56 (334)
T 3iqw_A 16 LRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAH 56 (334)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSSC
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence 46777779999999999999999999999999999999743
No 114
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=99.13 E-value=9.7e-09 Score=89.56 Aligned_cols=166 Identities=13% Similarity=0.195 Sum_probs=87.8
Q ss_pred eEEEEEcC-CCCCHHHHHHHHHHHHHHcCCccEEeecCcCc---------chhHHHHHhhcccC----Cc-ceeccCCCC
Q 019214 102 SVIMFVGL-QGSGKTTTCTKYAYYHQKKGWKPALVCADTFR---------AGAFDQLKQNATKA----KI-PFYGSYTES 166 (344)
Q Consensus 102 ~ii~ivG~-~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~---------~~~~~~l~~~~~~~----~v-~~~~~~~~~ 166 (344)
++|+|+|. +||||||++.+||..|+++|++|++++..... .+....+..+.... .. ++.. ....
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~dp~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~ 80 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDALALQRNSSLQLDYATVNPYTF-AEPT 80 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECSEEESCBCCTTSCBCHHHHHHHHTCSSCCCHHHHCSEEE-SSCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcceecCCccCCCCcChHHHHHHHHHhCCCCChhhcccEEe-CCCC
Confidence 57888875 69999999999999999999999997531110 11122222222111 00 0111 0011
Q ss_pred C------------HHHHHHHHHHHHHhCCCCEEEEcCCCCCcc-h-HHHHHHHHHhhhhcCCcEEEEEEcCCcc--hhHH
Q 019214 167 D------------PVRIAVEGVETFKKENCDLIIVDTSGRHKQ-E-AALFEEMRQVSEATNPDLVIFVMDSSIG--QAAF 230 (344)
Q Consensus 167 ~------------~~~~~~~~l~~~~~~~~d~vlIDT~G~~~~-~-~~~~~~l~~~~~~~~~d~illvvda~~~--~~~~ 230 (344)
. ....+.+.++.+. .+||++||||||.... . ... ....+.... .+.+++|+++... ....
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viID~p~~l~~p~~~~~--~~~~l~~~~-~~~vi~v~~~~~~~~~~~~ 156 (224)
T 1byi_A 81 SPHIISAQEGRPIESLVMSAGLRALE-QQADWVLVEGAGGWFTPLSDTF--TFADWVTQE-QLPVILVVGVKLGCINHAM 156 (224)
T ss_dssp CHHHHHHHHTCCCCHHHHHHHHHHHH-TTCSEEEEECSSSTTCEEETTE--EHHHHHHHH-TCCEEEEEECSTTHHHHHH
T ss_pred CHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCEEEEEcCCccccCCCcch--hHHHHHHHh-CCCEEEEecCCCCcHHHHH
Confidence 1 1122334455553 4899999999875421 1 000 000111111 2347788877543 2223
Q ss_pred HHHHHHh-ccCCcCEEEeecCCCCCCh-hhHHHHHHH-hCCCeEE
Q 019214 231 DQAQAFK-QSVSVGAVIVTKMDGHAKG-GGALSAVAA-TKSPVIF 272 (344)
Q Consensus 231 ~~~~~~~-~~~~~~~lVinK~D~~~~~-~~~~~~~~~-~~~pv~~ 272 (344)
...+.+. ...++.++|+|++|..... ....+.+.+ .+.|+..
T Consensus 157 ~~i~~l~~~~~~i~gvvlN~~~~~~~~~~~~~~~l~~~~~~~vl~ 201 (224)
T 1byi_A 157 LTAQVIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPLLG 201 (224)
T ss_dssp HHHHHHHHTTCCEEEEEEECCSSCCTTHHHHHHHHHHHSSSCEEE
T ss_pred HHHHHHHHCCCcEEEEEEeCCCCchhhHHHHHHHHHHHcCCCEEE
Confidence 3333332 3356679999999975332 334444433 6888753
No 115
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.13 E-value=4.1e-11 Score=99.10 Aligned_cols=149 Identities=10% Similarity=0.048 Sum_probs=76.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
..|+++|++||||||+++++. |........ ....+... .+ . .. .
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~------~~~~~~~~~-----------~~~~~~~~-~~-~-~~----------------~ 46 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFG------GVEDGPEAE-----------AAGHTYDR-SI-V-VD----------------G 46 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHC------CC---------------------CEEEE-EE-E-ET----------------T
T ss_pred EEEEEECCCCCCHHHHHHHHc------CccccCCCC-----------ccccceEE-EE-E-EC----------------C
Confidence 468999999999999999997 655432222 11111110 00 0 00 1
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHH---HHHHHHhc----cCCcCEEEeecCCCCC
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQ----SVSVGAVIVTKMDGHA 254 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~---~~~~~~~~----~~~~~~lVinK~D~~~ 254 (344)
..+.+.++||||..... . +.. .....+|.+++|+|.+...... .....+.. ...+..+|.||+|+..
T Consensus 47 ~~~~~~i~D~~g~~~~~-~----~~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 120 (166)
T 3q72_A 47 EEASLMVYDIWEQDGGR-W----LPG-HCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 120 (166)
T ss_dssp EEEEEEEEECC---------------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCS
T ss_pred EEEEEEEEECCCCccch-h----hhh-hhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccc
Confidence 14567899999975321 1 110 1123578999999998643221 12222221 1235578899999864
Q ss_pred Chh----hHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 255 KGG----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 255 ~~~----~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
... .........+ .+.+.+|+++|+| ++++++.+.+.+
T Consensus 121 ~~~~~~~~~~~~~~~~~------------------~~~~~~Sa~~~~g-i~~l~~~l~~~~ 162 (166)
T 3q72_A 121 SREVSVDEGRACAVVFD------------------CKFIETSAALHHN-VQALFEGVVRQI 162 (166)
T ss_dssp SCCSCHHHHHHHHHHTT------------------CEEEECBGGGTBS-HHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhC------------------CcEEEeccCCCCC-HHHHHHHHHHHH
Confidence 311 1112222212 1334578889999 999999887653
No 116
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.13 E-value=3.3e-10 Score=95.31 Aligned_cols=151 Identities=13% Similarity=0.025 Sum_probs=83.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...|+++|++||||||++++|. +.+. ... +.+ +............
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~------~~~~--~~~--~~~---------t~~~~~~~~~~~~---------------- 62 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFM------YDEF--VED--YEP---------TKADSYRKKVVLD---------------- 62 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------HSCC--CCS--CCT---------TCCEEEEEEEEET----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHh------hCCC--CCc--CCC---------ccceEEEEEEEEC----------------
Confidence 3679999999999999999998 3331 110 000 0000000000000
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHH---HHHHhc-cCCcCEEEeecCCCC
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQ---AQAFKQ-SVSVGAVIVTKMDGH 253 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~---~~~~~~-~~~~~~lVinK~D~~ 253 (344)
...+.+.|+||||...... .. ... ...+|.+++|+|++..... ... ...... ...+..+|+||+|+.
T Consensus 63 ~~~~~~~l~Dt~G~~~~~~-~~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 136 (187)
T 2a9k_A 63 GEEVQIDILDTAGQEDYAA-IR---DNY--FRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 136 (187)
T ss_dssp TEEEEEEEEECCCTTCCHH-HH---HHH--HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGG
T ss_pred CEEEEEEEEECCCCcccHH-HH---HHH--hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 0135788999999764332 11 111 2247899999999864221 111 122222 123457899999985
Q ss_pred CC----hhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 254 AK----GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 254 ~~----~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
.. ...........+. +.+.+|+++|.| +++++++|.+.+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~------------------~~~~~Sa~~~~g-i~~l~~~l~~~i 179 (187)
T 2a9k_A 137 DKRQVSVEEAKNRAEQWNV------------------NYVETSAKTRAN-VDKVFFDLMREI 179 (187)
T ss_dssp GGCCSCHHHHHHHHHHTTC------------------EEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred ccCccCHHHHHHHHHHcCC------------------eEEEeCCCCCCC-HHHHHHHHHHHH
Confidence 42 1122233332222 234567788999 999999887754
No 117
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.13 E-value=3.9e-10 Score=96.03 Aligned_cols=103 Identities=15% Similarity=0.047 Sum_probs=59.9
Q ss_pred CCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH---HHHHHhc-cCCcCEEEeecCCCCCC---h
Q 019214 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ-SVSVGAVIVTKMDGHAK---G 256 (344)
Q Consensus 184 ~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~---~~~~~~~-~~~~~~lVinK~D~~~~---~ 256 (344)
+.+.|+||||....... .. .....+|.+++|+|++.+..... ....+.. ...+..+|+||+|.... .
T Consensus 93 ~~~~i~Dt~G~~~~~~~----~~--~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~~~~~~~~ 166 (208)
T 3clv_A 93 IKFDIWDTAGQERYASI----VP--LYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDKNKFQVDI 166 (208)
T ss_dssp EEEEEEECTTGGGCTTT----HH--HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTCC-CCSCH
T ss_pred eEEEEEECCCcHHHHHH----HH--HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCcccccCCH
Confidence 67889999996432211 11 11336899999999987632222 2222222 12456889999994221 1
Q ss_pred hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 257 ~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
......+...+. +.+.+|++.|.| +++++++|.+.+
T Consensus 167 ~~~~~~~~~~~~------------------~~~~~Sa~~~~~-i~~l~~~l~~~~ 202 (208)
T 3clv_A 167 LEVQKYAQDNNL------------------LFIQTSAKTGTN-IKNIFYMLAEEI 202 (208)
T ss_dssp HHHHHHHHHTTC------------------EEEEECTTTCTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC------------------cEEEEecCCCCC-HHHHHHHHHHHH
Confidence 222333333222 234467778999 999999887653
No 118
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.12 E-value=2.2e-10 Score=94.38 Aligned_cols=150 Identities=12% Similarity=0.045 Sum_probs=80.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
..|+++|++||||||+++++. +.+.. . .+.+. ........+ . .. .
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~------~~~~~--~--~~~~~-------~~~~~~~~~-~-~~----------------~ 48 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFV------TGTFI--E--KYDPT-------IEDFYRKEI-E-VD----------------S 48 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHH------HSCCC--S--CCCTT-------CCEEEEEEE-E-ET----------------T
T ss_pred EEEEEECCCCCCHHHHHHHHH------cCCCc--c--cCCCC-------cceeEEEEE-E-EC----------------C
Confidence 569999999999999999998 32211 0 00000 000000000 0 00 0
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHhc----cCCcCEEEeecCCCCC
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ----SVSVGAVIVTKMDGHA 254 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~~----~~~~~~lVinK~D~~~ 254 (344)
..+.+.++||||...... ... .. ...+|.+++|+|++..... ......+.. ...+..+|+||+|...
T Consensus 49 ~~~~~~l~D~~G~~~~~~-~~~---~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 122 (167)
T 1kao_A 49 SPSVLEILDTAGTEQFAS-MRD---LY--IKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122 (167)
T ss_dssp EEEEEEEEECCCTTCCHH-HHH---HH--HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGG
T ss_pred EEEEEEEEECCCchhhHH-HHH---HH--hccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccc
Confidence 134578999999764332 111 11 2246899999999864321 112222211 2245578899999753
Q ss_pred Ch----hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 255 KG----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 255 ~~----~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
.. ..........+.|+ +.+|+++|.| ++++++.|.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~------------------~~~Sa~~~~g-i~~l~~~l~~~~ 164 (167)
T 1kao_A 123 EREVSSSEGRALAEEWGCPF------------------METSAKSKTM-VDELFAEIVRQM 164 (167)
T ss_dssp GCCSCHHHHHHHHHHHTSCE------------------EEECTTCHHH-HHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHhCCCE------------------EEecCCCCcC-HHHHHHHHHHHH
Confidence 21 11222333333332 3346677888 998888886643
No 119
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.12 E-value=1.7e-11 Score=101.73 Aligned_cols=152 Identities=13% Similarity=0.076 Sum_probs=78.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
..|+++|++||||||+++.+. +........ .. .+........... .
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~------~~~~~~~~~-----------~~-~~~~~~~~~~~~~----------------~ 48 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFG------GLQGDHAHE-----------ME-NSEDTYERRIMVD----------------K 48 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHH------CC------------------------CEEEEEEEET----------------T
T ss_pred EEEEEECCCCCCHHHHHHHHH------hccCccccc-----------CC-CcCCeeeEEEEEC----------------C
Confidence 458999999999999999998 433221111 00 0000000000000 0
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchh---HHHHHHHHhcc----CCcCEEEeecCCCCC
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQAQAFKQS----VSVGAVIVTKMDGHA 254 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~---~~~~~~~~~~~----~~~~~lVinK~D~~~ 254 (344)
..+.+.++||||....... +.. .....+|.+++|+|.+.... .......+... ..+..+|.||+|+..
T Consensus 49 ~~~~~~i~D~~g~~~~~~~----~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (169)
T 3q85_A 49 EEVTLIVYDIWEQGDAGGW----LQD-HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR 123 (169)
T ss_dssp EEEEEEEECCCCC------------C-HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGG
T ss_pred eEEEEEEEECCCccccchh----hhh-hhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhh
Confidence 1456789999998542211 111 01224799999999986422 11222222221 235578899999853
Q ss_pred Ch----hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 255 KG----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 255 ~~----~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
.. ..........+. +.+.+|+++|+| ++++++.+.+.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~------------------~~~~~Sa~~~~~-v~~l~~~l~~~i 165 (169)
T 3q85_A 124 SREVSLEEGRHLAGTLSC------------------KHIETSAALHHN-TRELFEGAVRQI 165 (169)
T ss_dssp GCCSCHHHHHHHHHHTTC------------------EEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHcCC------------------cEEEecCccCCC-HHHHHHHHHHHH
Confidence 21 122222232222 234567788999 999998887653
No 120
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=99.12 E-value=1.4e-09 Score=102.91 Aligned_cols=42 Identities=26% Similarity=0.366 Sum_probs=37.8
Q ss_pred CCCCeEEEEEc-CCCCCHHHHHHHHHHHHHHcCCccEEeecCc
Q 019214 98 KGKPSVIMFVG-LQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (344)
Q Consensus 98 ~~~~~ii~ivG-~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~ 139 (344)
.+++++|+|+| .+||||||++.+||..|++.|++|++||+|+
T Consensus 140 ~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D~ 182 (373)
T 3fkq_A 140 NDKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIEQ 182 (373)
T ss_dssp TTSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECCT
T ss_pred CCCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 45678999985 6799999999999999999999999999994
No 121
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.12 E-value=2.8e-10 Score=107.19 Aligned_cols=117 Identities=15% Similarity=0.189 Sum_probs=72.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
+...|+++|.||||||||+|+|+ |.++.+ +. .+++|+..++-....
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt------~~~~~v-~~-----------~pftT~~~~~g~~~~---------------- 116 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLT------GTESEA-AE-----------YEFTTLVTVPGVIRY---------------- 116 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHH------SBCCCG-GG-----------TCSSCCCEEEEEEEE----------------
T ss_pred CCCeEEEECCCCCCHHHHHHHHh------CCCCcc-cC-----------CCCceeeeeeEEEEe----------------
Confidence 34579999999999999999999 876543 33 456666544322211
Q ss_pred HhCCCCEEEEcCCCCCcchHHHHHHHHH-hhhhcCCcEEEEEEcCCcchhHHHH----HHHHhc--cCCcCEEEeecCCC
Q 019214 180 KKENCDLIIVDTSGRHKQEAALFEEMRQ-VSEATNPDLVIFVMDSSIGQAAFDQ----AQAFKQ--SVSVGAVIVTKMDG 252 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~~~~~~~l~~-~~~~~~~d~illvvda~~~~~~~~~----~~~~~~--~~~~~~lVinK~D~ 252 (344)
.+..+.|+||||+............. +.....+|.+++|+|++.+....+. +..+.. ...+..+++||.|.
T Consensus 117 --~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 117 --KGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp --TTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred --CCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence 26778999999986543221111122 2334468999999999865333332 222211 12345788999996
No 122
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.11 E-value=1.8e-10 Score=95.48 Aligned_cols=149 Identities=14% Similarity=0.099 Sum_probs=81.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCccee---ccCCCCCHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFY---GSYTESDPVRIAVEGVE 177 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~---~~~~~~~~~~~~~~~l~ 177 (344)
...|+++|++||||||+++++. +.+.. . .+.+ ..+..+. ....+
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~------~~~~~---~-~~~~-----------t~~~~~~~~~~~~~~------------ 52 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYC------ENKFN---D-KHIT-----------TLGASFLTKKLNIGG------------ 52 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH------HCCCC---S-SCCC-----------CCSCEEEEEEEESSS------------
T ss_pred ceEEEEECcCCCCHHHHHHHHH------cCCCC---c-CCCC-----------ccceEEEEEEEEECC------------
Confidence 3579999999999999999998 33211 0 0000 0011100 00000
Q ss_pred HHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH---HHHHHh---ccCCcCEEEeecCC
Q 019214 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFK---QSVSVGAVIVTKMD 251 (344)
Q Consensus 178 ~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~---~~~~~~---~~~~~~~lVinK~D 251 (344)
..+.+.++||||..... .+. ......+|.+++|+|++....... ....+. ....+..+|+||+|
T Consensus 53 ----~~~~l~i~Dt~G~~~~~-----~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D 122 (170)
T 1z08_A 53 ----KRVNLAIWDTAGQERFH-----ALG-PIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKID 122 (170)
T ss_dssp ----CEEEEEEEECCCC-------------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGG
T ss_pred ----EEEEEEEEECCCcHhhh-----hhH-HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcc
Confidence 13567899999964321 111 112336899999999986532211 112221 12234578999999
Q ss_pred CCCC----hhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 252 GHAK----GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 252 ~~~~----~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
+... ...........+. +.+.+|+++|.| +++++++|.+.+
T Consensus 123 l~~~~~~~~~~~~~~~~~~~~------------------~~~~~Sa~~~~g-i~~l~~~l~~~~ 167 (170)
T 1z08_A 123 LEKERHVSIQEAESYAESVGA------------------KHYHTSAKQNKG-IEELFLDLCKRM 167 (170)
T ss_dssp GGGGCCSCHHHHHHHHHHTTC------------------EEEEEBTTTTBS-HHHHHHHHHHHH
T ss_pred cccccccCHHHHHHHHHHcCC------------------eEEEecCCCCCC-HHHHHHHHHHHH
Confidence 8542 1122233332222 223467788999 999999887643
No 123
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.11 E-value=5.2e-10 Score=95.85 Aligned_cols=151 Identities=13% Similarity=0.035 Sum_probs=83.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...|+++|.+||||||+++.|. +... ... +.+ + .+..+.......
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~------~~~~--~~~--~~~---------t--~~~~~~~~~~~~-------------- 58 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFM------YDEF--VED--YEP---------T--KADSYRKKVVLD-------------- 58 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------HSCC--CTT--CCT---------T--CCEEEEEEEEET--------------
T ss_pred eEEEEEECCCCCCHHHHHHHHH------hCCC--CCC--CCC---------c--cceEEEEEEEEC--------------
Confidence 4679999999999999999998 3331 110 100 0 000000000000
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHhc----cCCcCEEEeecCCCC
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ----SVSVGAVIVTKMDGH 253 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~~----~~~~~~lVinK~D~~ 253 (344)
...+.+.|+||||........ ... ...+|.+++|+|++..... ......+.. ...+..+|+||+|..
T Consensus 59 ~~~~~~~l~Dt~G~~~~~~~~----~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (206)
T 2bov_A 59 GEEVQIDILDTAGQEDYAAIR----DNY--FRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 132 (206)
T ss_dssp TEEEEEEEEECCCTTCCHHHH----HHH--HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCG
T ss_pred CEEEEEEEEcCCChhhhHHHH----HHH--HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcc
Confidence 013577899999976533211 111 2247899999999864321 112222221 123458899999985
Q ss_pred CC----hhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 254 AK----GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 254 ~~----~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
.. ...........+.| .+.+|+.+|.| ++++++.|.+.+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~------------------~~~~Sa~~g~g-i~~l~~~l~~~i 175 (206)
T 2bov_A 133 DKRQVSVEEAKNRAEQWNVN------------------YVETSAKTRAN-VDKVFFDLMREI 175 (206)
T ss_dssp GGCCSCHHHHHHHHHHHTCE------------------EEEECTTTCTT-HHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhCCe------------------EEEEeCCCCCC-HHHHHHHHHHHH
Confidence 42 11222333333322 34466778888 999888887765
No 124
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.11 E-value=1.9e-10 Score=98.21 Aligned_cols=156 Identities=22% Similarity=0.131 Sum_probs=84.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
+...|+++|++||||||+++++. +.+.. ...| + .+..... ..
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~------~~~~~--~~~~-------------t-~~~~~~~-~~--------------- 69 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLK------LGEIV--TTIP-------------T-IGFNVET-VE--------------- 69 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHC------SSCCE--EEEE-------------E-TTEEEEE-EE---------------
T ss_pred CccEEEEECCCCCCHHHHHHHHH------hCCcc--ccCC-------------c-CceeEEE-EE---------------
Confidence 44679999999999999999997 44322 1111 0 0110000 00
Q ss_pred HhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHH---HHHHHHhc----cCCcCEEEeecCCC
Q 019214 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQ----SVSVGAVIVTKMDG 252 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~---~~~~~~~~----~~~~~~lVinK~D~ 252 (344)
..++.+.++||||...... . .. .....+|.+++|+|++...... .....+.. ...+..+|.||+|+
T Consensus 70 -~~~~~~~i~Dt~G~~~~~~-~---~~--~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl 142 (192)
T 2b6h_A 70 -YKNICFTVWDVGGQDKIRP-L---WR--HYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDM 142 (192)
T ss_dssp -ETTEEEEEEECC-----CT-T---HH--HHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred -ECCEEEEEEECCCCHhHHH-H---HH--HHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCC
Confidence 0156788999999743211 0 11 1123689999999998653222 22222221 12455888999998
Q ss_pred CCChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 253 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 253 ~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
..... ........+.+ .... ...+.+.+|+++|.| ++++++.|.+.+.
T Consensus 143 ~~~~~-~~~i~~~~~~~--------~~~~--~~~~~~~~SA~~g~g-i~~l~~~l~~~i~ 190 (192)
T 2b6h_A 143 PNAMP-VSELTDKLGLQ--------HLRS--RTWYVQATCATQGTG-LYDGLDWLSHELS 190 (192)
T ss_dssp TTCCC-HHHHHHHTTGG--------GCSS--CCEEEEECBTTTTBT-HHHHHHHHHHHTT
T ss_pred CCCCC-HHHHHHHhCcc--------cccC--CceEEEECcCCCcCC-HHHHHHHHHHHHh
Confidence 65421 11111111100 0000 011345678999999 9999999987653
No 125
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.11 E-value=5e-10 Score=95.44 Aligned_cols=155 Identities=17% Similarity=0.188 Sum_probs=86.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
....|+++|.+||||||++++|. +.+.. +.+.+. ........+ . ..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~------~~~~~----~~~~~t-----~~~~~~~~~---~-~~--------------- 52 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFV------KGTFR----DTYIPT-----IEDTYRQVI---S-CD--------------- 52 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHH------HSCCC----CTTSCC-----CCEEEEEEE---E-ET---------------
T ss_pred CeeEEEEECCCCCcHHHHHHHHH------cCCCC----CcccCc-----cccceeEEE---E-EC---------------
Confidence 34679999999999999999998 32211 000000 000000000 0 00
Q ss_pred HhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH------HHHHHHHhc--cCCcCEEEeecCC
Q 019214 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA------FDQAQAFKQ--SVSVGAVIVTKMD 251 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~------~~~~~~~~~--~~~~~~lVinK~D 251 (344)
...+.+.++||||...... .. ... ...+|.+++|+|++..... ......+.. ...+..+|+||+|
T Consensus 53 -~~~~~~~l~Dt~G~~~~~~-~~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~D 125 (199)
T 2gf0_A 53 -KSVCTLQITDTTGSHQFPA-MQ---RLS--ISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCD 125 (199)
T ss_dssp -TEEEEEEEEECCGGGSCHH-HH---HHH--HHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTT
T ss_pred -CEEEEEEEEeCCChHHhHH-HH---HHh--hccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 0145678999999754321 11 111 2247999999999764221 111222221 1234588999999
Q ss_pred CCCCh---hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCCC
Q 019214 252 GHAKG---GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMD 314 (344)
Q Consensus 252 ~~~~~---~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~~ 314 (344)
+.... ..........+. +.+.+|+.+|+| +++++++|.+.+...
T Consensus 126 l~~~~~~~~~~~~~~~~~~~------------------~~~~~Sa~~~~g-i~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 126 ETQREVDTREAQAVAQEWKC------------------AFMETSAKMNYN-VKELFQELLTLETRR 172 (199)
T ss_dssp CSSCSSCHHHHHHHHHHHTC------------------EEEECBTTTTBS-HHHHHHHHHHHCSSS
T ss_pred CCccccCHHHHHHHHHHhCC------------------eEEEEecCCCCC-HHHHHHHHHHHHhhh
Confidence 86431 111222222221 234467889999 999999999887544
No 126
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.11 E-value=5.7e-10 Score=95.55 Aligned_cols=153 Identities=13% Similarity=0.034 Sum_probs=81.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
+...|+++|.+||||||+++.|. +.+..- .+.+ ....+.....+ . ..
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~------~~~~~~----~~~~------t~~~~~~~~~~-~-~~--------------- 73 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLC------KNEFRE----NISA------TLGVDFQMKTL-I-VD--------------- 73 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHH------HCCCC--------------------CEEEEE-E-ET---------------
T ss_pred CCeEEEEECcCCCCHHHHHHHHH------hCCCCc----cCCC------CccceeEEEEE-E-EC---------------
Confidence 45789999999999999999998 332110 0000 00000000000 0 00
Q ss_pred HhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHhc---cCCcCEEEeecCCCC
Q 019214 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ---SVSVGAVIVTKMDGH 253 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~~---~~~~~~lVinK~D~~ 253 (344)
...+.+.|+||||........ .. ....+|.+++|+|++..... ......+.. ...+..+|+||+|+.
T Consensus 74 -~~~~~l~i~Dt~G~~~~~~~~----~~--~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 74 -GERTVLQLWDTAGQERFRSIA----KS--YFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIR 146 (199)
T ss_dssp -TEEEEEEEEECTTCTTCHHHH----HH--HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGH
T ss_pred -CEEEEEEEEECCCCcchhhhH----HH--HHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 013567899999976433211 11 12347999999999865322 112222221 123458889999984
Q ss_pred CC----------hhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 254 AK----------GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 254 ~~----------~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
.. ...........+. +.+.+|+++|+| ++++++.|.+.+
T Consensus 147 ~~~~~~~~~~v~~~~~~~~~~~~~~------------------~~~~~SA~~g~g-v~el~~~l~~~i 195 (199)
T 2p5s_A 147 DTAATEGQKCVPGHFGEKLAMTYGA------------------LFCETSAKDGSN-IVEAVLHLAREV 195 (199)
T ss_dssp HHHHHTTCCCCCHHHHHHHHHHHTC------------------EEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred cccccccccccCHHHHHHHHHHcCC------------------eEEEeeCCCCCC-HHHHHHHHHHHH
Confidence 21 0111111221121 234467889999 999999887754
No 127
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.11 E-value=3.4e-10 Score=94.49 Aligned_cols=152 Identities=16% Similarity=0.079 Sum_probs=83.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...|+++|.+||||||++++|. +.+.. .. + ..+ .+..+...... ..
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~------~~~~~--~~--~---------~~t--~~~~~~~~~~~-------------~~ 60 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFT------EKKFM--AD--C---------PHT--IGVEFGTRIIE-------------VS 60 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------HSCCC--SS--C---------TTS--CCCCEEEEEEE-------------ET
T ss_pred ceEEEEECCCCCCHHHHHHHHH------cCCCC--CC--C---------CCc--cceEEEEEEEE-------------EC
Confidence 4679999999999999999998 33321 00 0 000 01111000000 00
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHH---HHHHHHh---ccCCcCEEEeecCCCCC
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFK---QSVSVGAVIVTKMDGHA 254 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~---~~~~~~~---~~~~~~~lVinK~D~~~ 254 (344)
...+.+.++||||........ . .....+|.+++|+|++...... .....+. ....+..+|+||+|+..
T Consensus 61 ~~~~~~~l~Dt~G~~~~~~~~----~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 134 (179)
T 1z0f_A 61 GQKIKLQIWDTAGQERFRAVT----R--SYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEA 134 (179)
T ss_dssp TEEEEEEEEECTTGGGTCHHH----H--HHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred CeEEEEEEEECCCChHhhhhH----H--HHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 014577899999964322111 1 1123579999999998653221 1222222 12234578899999853
Q ss_pred Ch----hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 255 KG----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 255 ~~----~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
.. ..........+. +.+.+|+++|+| ++++++++.+.+
T Consensus 135 ~~~~~~~~~~~~~~~~~~------------------~~~~~Sa~~~~g-i~~l~~~l~~~i 176 (179)
T 1z0f_A 135 QRDVTYEEAKQFAEENGL------------------LFLEASAKTGEN-VEDAFLEAAKKI 176 (179)
T ss_dssp GCCSCHHHHHHHHHHTTC------------------EEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHcCC------------------EEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 21 122233332222 234467789999 999998887654
No 128
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.11 E-value=6e-11 Score=100.32 Aligned_cols=156 Identities=16% Similarity=0.095 Sum_probs=87.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
+...|+++|++||||||+++++. +.+ .....|. .+.......
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~------~~~--~~~~~~t--------------~~~~~~~~~---------------- 58 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFN------GED--VDTISPT--------------LGFNIKTLE---------------- 58 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHT------TCC--CSSCCCC--------------SSEEEEEEE----------------
T ss_pred CeeEEEEECCCCCCHHHHHHHHh------cCC--CCccccc--------------CccceEEEE----------------
Confidence 44779999999999999999998 544 1111110 011100000
Q ss_pred HhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHH---HHHHHHhc----cCCcCEEEeecCCC
Q 019214 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQ----SVSVGAVIVTKMDG 252 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~---~~~~~~~~----~~~~~~lVinK~D~ 252 (344)
..++.+.++||||..... .+ .......+|.+++|+|++...... .....+.. ...+..+|+||+|+
T Consensus 59 -~~~~~~~~~Dt~G~~~~~-----~~-~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 131 (186)
T 1ksh_A 59 -HRGFKLNIWDVGGQKSLR-----SY-WRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 131 (186)
T ss_dssp -ETTEEEEEEEECCSHHHH-----TT-GGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred -ECCEEEEEEECCCCHhHH-----HH-HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccC
Confidence 015678899999973211 11 111234689999999998653222 22222221 12456888999998
Q ss_pred CCChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 253 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 253 ~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
..... ........+. ..... ...+.+.+|+++|+| ++++++.+.+.+.
T Consensus 132 ~~~~~-~~~~~~~~~~--------~~~~~--~~~~~~~~Sa~~~~g-i~~l~~~l~~~i~ 179 (186)
T 1ksh_A 132 PGALS-CNAIQEALEL--------DSIRS--HHWRIQGCSAVTGED-LLPGIDWLLDDIS 179 (186)
T ss_dssp TTCCC-HHHHHHHTTG--------GGCCS--SCEEEEECCTTTCTT-HHHHHHHHHHHHH
T ss_pred CCCCC-HHHHHHHhCh--------hhccC--CceEEEEeeCCCCCC-HHHHHHHHHHHHH
Confidence 65421 1111111110 00000 111345678899999 9999999887653
No 129
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.10 E-value=1.9e-10 Score=97.54 Aligned_cols=152 Identities=14% Similarity=0.076 Sum_probs=84.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...|+++|++||||||++++|. +.+...... ...+..+...... ..
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~------~~~~~~~~~---------------~t~~~~~~~~~~~-------------~~ 67 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYA------DDSFTPAFV---------------STVGIDFKVKTVY-------------RH 67 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------HSCCCCSCC---------------CCCCCEEEEEEEE-------------ET
T ss_pred eeEEEEECCCCCCHHHHHHHHH------cCCCCCCcC---------------CceeEEEEEEEEE-------------EC
Confidence 3679999999999999999998 332210000 0001111000000 00
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHhc---cCCcCEEEeecCCCCC
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ---SVSVGAVIVTKMDGHA 254 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~~---~~~~~~lVinK~D~~~ 254 (344)
...+.+.++||||...... + .......+|.+++|+|++..... ......+.. ...+..+|+||+|+..
T Consensus 68 ~~~~~~~l~Dt~G~~~~~~-----~-~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 141 (189)
T 2gf9_A 68 DKRIKLQIWDTAGQERYRT-----I-TTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLED 141 (189)
T ss_dssp TEEEEEEEEECCSCCSSCC-----S-GGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred CeEEEEEEEeCCCcHHHhh-----h-HHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc
Confidence 0145778999999743211 0 11223468999999999764221 122222222 2345588899999854
Q ss_pred Ch----hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 255 KG----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 255 ~~----~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
.. ..........+. +.+.+|+++|.| +++++++|.+.+
T Consensus 142 ~~~~~~~~~~~~~~~~~~------------------~~~~~Sa~~g~g-i~~l~~~l~~~i 183 (189)
T 2gf9_A 142 ERVVPAEDGRRLADDLGF------------------EFFEASAKENIN-VKQVFERLVDVI 183 (189)
T ss_dssp GCCSCHHHHHHHHHHHTC------------------EEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHcCC------------------eEEEEECCCCCC-HHHHHHHHHHHH
Confidence 21 122233333332 234467778999 999999887654
No 130
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.10 E-value=1.4e-10 Score=118.05 Aligned_cols=34 Identities=15% Similarity=0.054 Sum_probs=29.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcC
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~ 140 (344)
+..|+|+|.+|+||||++|+|. |.+++.++.+|.
T Consensus 69 ~~~V~VvG~~naGKSSLlNaLl------g~~~~~v~~~p~ 102 (695)
T 2j69_A 69 VFRLLVLGDMKRGKSTFLNALI------GENLLPSDVNPC 102 (695)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH------TSSCSCCCCCTT
T ss_pred CCEEEEECCCCCCHHHHHHHHh------CCCCCCCCCCCC
Confidence 3679999999999999999999 988887776553
No 131
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.10 E-value=6.1e-10 Score=94.16 Aligned_cols=104 Identities=13% Similarity=0.044 Sum_probs=61.4
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHhc----cCCcCEEEeecCCCCCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ----SVSVGAVIVTKMDGHAK 255 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~~----~~~~~~lVinK~D~~~~ 255 (344)
.+.+.++||||...... . . ......+|.+++|+|++..... ......+.. ...+..+|+||+|....
T Consensus 69 ~~~~~l~Dt~G~~~~~~-~---~--~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 142 (195)
T 3bc1_A 69 RIHLQLWDTAGLERFRS-L---T--TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQ 142 (195)
T ss_dssp EEEEEEEEECCSGGGHH-H---H--HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGG
T ss_pred EEEEEEEeCCCcHHHHH-H---H--HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 35788999999854221 1 1 1223468999999999865322 222222221 22345888999998542
Q ss_pred ----hhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 256 ----GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 256 ----~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
...........+.| .+.+|+++|.| ++++++.|.+.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~------------------~~~~Sa~~~~~-v~~l~~~l~~~~ 183 (195)
T 3bc1_A 143 RAVKEEEARELAEKYGIP------------------YFETSAANGTN-ISHAIEMLLDLI 183 (195)
T ss_dssp CCSCHHHHHHHHHHHTCC------------------EEECCTTTCTT-HHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCC------------------EEEEECCCCCC-HHHHHHHHHHHH
Confidence 11222333333322 34466778999 999999887765
No 132
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=99.10 E-value=4.5e-10 Score=107.32 Aligned_cols=43 Identities=21% Similarity=0.186 Sum_probs=30.5
Q ss_pred CCCeEEEEE-cCCCCCHHHHHHHHHHHHH------HcCCccEEeecCcCc
Q 019214 99 GKPSVIMFV-GLQGSGKTTTCTKYAYYHQ------KKGWKPALVCADTFR 141 (344)
Q Consensus 99 ~~~~ii~iv-G~~GvGKTTl~~~La~~l~------~~g~~v~iv~~D~~~ 141 (344)
.++++|+|+ |++||||||++.+||..|+ +.|++|++||+|++.
T Consensus 109 ~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~~ 158 (403)
T 3ez9_A 109 KSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQA 158 (403)
T ss_dssp CSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESSSS
T ss_pred CCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCC
Confidence 356888888 6779999999999999998 679999999999864
No 133
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.10 E-value=2.3e-10 Score=97.14 Aligned_cols=105 Identities=13% Similarity=0.028 Sum_probs=60.8
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch-----hHHHHH-HHHhc-----cCCcCEEEeecCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ-----AAFDQA-QAFKQ-----SVSVGAVIVTKMD 251 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~-----~~~~~~-~~~~~-----~~~~~~lVinK~D 251 (344)
.+.+.++||||........ -.....+|.+++|+|++.+. .....+ ..+.. ...+..+|.||+|
T Consensus 73 ~~~~~i~Dt~G~~~~~~~~------~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~D 146 (198)
T 3t1o_A 73 KTRFHLYTVPGQVFYNASR------KLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRD 146 (198)
T ss_dssp EEEEEEEECCSCCSCSHHH------HHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTT
T ss_pred ceEEEEEeCCChHHHHHHH------HHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchh
Confidence 4567899999975433111 11234689999999998431 111111 11211 1235578899999
Q ss_pred CCCCh--hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 252 GHAKG--GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 252 ~~~~~--~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
+.... ......+...+ ..+.+.+|+++|+| +++++++|.+.+
T Consensus 147 l~~~~~~~~~~~~~~~~~-----------------~~~~~~~Sa~~~~g-v~~l~~~l~~~i 190 (198)
T 3t1o_A 147 LPDALPVEMVRAVVDPEG-----------------KFPVLEAVATEGKG-VFETLKEVSRLV 190 (198)
T ss_dssp STTCCCHHHHHHHHCTTC-----------------CSCEEECBGGGTBT-HHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHhcC-----------------CceEEEEecCCCcC-HHHHHHHHHHHH
Confidence 86542 11222221111 11345678889999 999999887654
No 134
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.09 E-value=2.5e-10 Score=98.23 Aligned_cols=153 Identities=17% Similarity=0.129 Sum_probs=84.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...|+++|++||||||++++|. +.+.. .+ + ....+..+...... ..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~------~~~~~---~~-~-----------~~t~~~~~~~~~~~-------------~~ 53 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFS------DDTYT---ND-Y-----------ISTIGVDFKIKTVE-------------LD 53 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH------HCCCC---TT-C-----------CCSSCCCEEEEEEE-------------ET
T ss_pred ceEEEEECCCCCCHHHHHHHHh------cCCCC---CC-C-----------CCcccceeEEEEEE-------------EC
Confidence 3579999999999999999998 33221 00 0 00011111000000 00
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH---HHHHHh---ccCCcCEEEeecCCCCC
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFK---QSVSVGAVIVTKMDGHA 254 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~---~~~~~~---~~~~~~~lVinK~D~~~ 254 (344)
...+.+.++||||...... + .......+|.+++|+|++....... ....+. ....+..+|+||+|+..
T Consensus 54 ~~~~~~~l~Dt~G~~~~~~-----~-~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (206)
T 2bcg_Y 54 GKTVKLQIWDTAGQERFRT-----I-TSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKD 127 (206)
T ss_dssp TEEEEEEEECCTTTTTTTC-----C-CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred CEEEEEEEEeCCChHHHHH-----H-HHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 0135788999999643210 0 0112346899999999986532211 222222 12234578899999864
Q ss_pred Ch----hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 255 KG----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 255 ~~----~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
.. ..........+. +.+.+|+++|+| ++++++.|.+.+.
T Consensus 128 ~~~~~~~~~~~~~~~~~~------------------~~~~~Sa~~g~g-i~~l~~~l~~~i~ 170 (206)
T 2bcg_Y 128 KRVVEYDVAKEFADANKM------------------PFLETSALDSTN-VEDAFLTMARQIK 170 (206)
T ss_dssp TCCSCHHHHHHHHHHTTC------------------CEEECCTTTCTT-HHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHcCC------------------eEEEEeCCCCCC-HHHHHHHHHHHHH
Confidence 21 122222232222 234467778899 9999988877653
No 135
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.09 E-value=2.1e-10 Score=94.92 Aligned_cols=151 Identities=13% Similarity=0.061 Sum_probs=81.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
..|+++|++||||||+++++. +.+... . + .+..+ ........... .
T Consensus 4 ~~i~v~G~~~~GKssli~~l~------~~~~~~-~---~--------~~~~~-~~~~~~~~~~~---------------~ 49 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFV------EDKFNP-S---F--------ITTIG-IDFKIKTVDIN---------------G 49 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHH------HCCCCC--------------------CCEEEEEEESS---------------S
T ss_pred eEEEEECcCCCCHHHHHHHHH------hCCCCC-C---C--------CCccc-eeEEEEEEEEC---------------C
Confidence 568999999999999999998 433210 0 0 00000 00000000000 0
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHhc---cCCcCEEEeecCCCCCC
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ---SVSVGAVIVTKMDGHAK 255 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~~---~~~~~~lVinK~D~~~~ 255 (344)
..+.+.++||||....... . ......+|.+++|+|++..... ......+.. ...+..+|+||+|+..+
T Consensus 50 ~~~~~~l~D~~G~~~~~~~----~--~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 123 (170)
T 1g16_A 50 KKVKLQIWDTAGQERFRTI----T--TAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR 123 (170)
T ss_dssp CEEEEEEECCTTGGGTSCC----C--HHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTC
T ss_pred EEEEEEEEeCCCChhhhhh----H--HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcC
Confidence 1356789999996322100 0 0112357899999999865321 122222221 22355788999998432
Q ss_pred h---hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 256 G---GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 256 ~---~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
. ..........+.| .+.+|+++|.| ++++++.|.+.+
T Consensus 124 ~~~~~~~~~~~~~~~~~------------------~~~~Sa~~~~g-v~~l~~~l~~~~ 163 (170)
T 1g16_A 124 VVTADQGEALAKELGIP------------------FIESSAKNDDN-VNEIFFTLAKLI 163 (170)
T ss_dssp CSCHHHHHHHHHHHTCC------------------EEECBTTTTBS-HHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCe------------------EEEEECCCCCC-HHHHHHHHHHHH
Confidence 1 1222233333322 34457778899 999998887754
No 136
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.09 E-value=2e-10 Score=99.44 Aligned_cols=168 Identities=14% Similarity=0.047 Sum_probs=82.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...|+++|.+||||||+++++. +... ... + .+ ....+.......
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~------~~~~--~~~--~-----------~~-~~~~~~~~~~~~-------------- 50 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLL------TGQY--RDT--Q-----------TS-ITDSSAIYKVNN-------------- 50 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHH------HSCC--CCB--C-----------CC-CSCEEEEEECSS--------------
T ss_pred CCEEEEECCCCCCHHHHHHHHh------CCCc--ccc--c-----------CC-cceeeEEEEecC--------------
Confidence 4679999999999999999998 3321 000 0 00 000100000000
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchh-HHHHHH---H-Hh-----ccCCcCEEEeecC
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA-AFDQAQ---A-FK-----QSVSVGAVIVTKM 250 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~-~~~~~~---~-~~-----~~~~~~~lVinK~ 250 (344)
..++.+.++||||.......+ .... ...+|.+++|+|++.... ...... . +. ....+..+|.||+
T Consensus 51 ~~~~~~~i~Dt~G~~~~~~~~---~~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 125 (214)
T 2fh5_B 51 NRGNSLTLIDLPGHESLRFQL---LDRF--KSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQ 125 (214)
T ss_dssp TTCCEEEEEECCCCHHHHHHH---HHHH--GGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECT
T ss_pred CCccEEEEEECCCChhHHHHH---HHHH--HhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECC
Confidence 014678999999985322111 1111 335789999999976321 111111 1 11 1124568889999
Q ss_pred CCCCCh--hhHHHHHHH-----hCCCeEEEe--cCCCCCc-Cc-----C--------CChHHHHHHHhC------CCChh
Q 019214 251 DGHAKG--GGALSAVAA-----TKSPVIFIG--TGEHMDE-FE-----V--------FDVKPFVSRLLG------MGDWS 301 (344)
Q Consensus 251 D~~~~~--~~~~~~~~~-----~~~pv~~~~--~g~~~~~-l~-----~--------~~~~~~is~~~g------~g~i~ 301 (344)
|+.... ......+.. ...|+..++ .|..+.. .. . ..+.+.+|+++| +| ++
T Consensus 126 Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~g-v~ 204 (214)
T 2fh5_B 126 DIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSAD-IQ 204 (214)
T ss_dssp TSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCB-CH
T ss_pred CCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccC-hH
Confidence 986442 111111111 112333332 2222211 00 0 123455899999 99 99
Q ss_pred HHHHHHHhh
Q 019214 302 GFMDKIHEV 310 (344)
Q Consensus 302 ~l~~~i~~~ 310 (344)
++.++|.+.
T Consensus 205 ~lf~~l~~~ 213 (214)
T 2fh5_B 205 DLEKWLAKI 213 (214)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998765
No 137
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.09 E-value=2.9e-10 Score=94.97 Aligned_cols=106 Identities=13% Similarity=0.103 Sum_probs=60.8
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHh---ccCCcCEEEeecCCCCCCh
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFK---QSVSVGAVIVTKMDGHAKG 256 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~---~~~~~~~lVinK~D~~~~~ 256 (344)
.+.+.++||||........ . .....+|.+++|+|++..... ......+. ....+..+|+||+|+....
T Consensus 62 ~~~~~~~Dt~G~~~~~~~~----~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 135 (179)
T 2y8e_A 62 TVRLQLWDTAGQERFRSLI----P--SYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKR 135 (179)
T ss_dssp EEEEEEEEECCSGGGGGGS----H--HHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGC
T ss_pred EEEEEEEECCCcHHHHHHH----H--HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccC
Confidence 3567899999964322111 0 112368999999999764221 12222221 1223457889999985321
Q ss_pred ----hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCC
Q 019214 257 ----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (344)
Q Consensus 257 ----~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~ 313 (344)
..........+. +.+.+|+++|+| ++++++.|.+.+..
T Consensus 136 ~~~~~~~~~~~~~~~~------------------~~~~~Sa~~~~~-i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 136 QVSTEEGERKAKELNV------------------MFIETSAKAGYN-VKQLFRRVAAALPG 177 (179)
T ss_dssp CSCHHHHHHHHHHHTC------------------EEEEEBTTTTBS-HHHHHHHHHHTCC-
T ss_pred cCCHHHHHHHHHHcCC------------------eEEEEeCCCCCC-HHHHHHHHHHHHhh
Confidence 122222232222 234456778999 99999999887643
No 138
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.09 E-value=1.8e-10 Score=112.97 Aligned_cols=158 Identities=15% Similarity=0.033 Sum_probs=90.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...|+++|.+||||||++++|. +.+. +..-| + .+..+.. ..
T Consensus 322 ~~ki~lvG~~nvGKSsLl~~l~------~~~~--~~~~~-------------T-~~~~~~~-~~---------------- 362 (497)
T 3lvq_E 322 EMRILMLGLDAAGKTTILYKLK------LGQS--VTTIP-------------T-VGFNVET-VT---------------- 362 (497)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------HSSC--CCCCC-------------C-SSEEEEE-EE----------------
T ss_pred ceeEEEEcCCCCCHHHHHHHHh------cCCC--CCcCC-------------c-cceeEEE-EE----------------
Confidence 3578999999999999999998 4331 11100 1 1111111 00
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH---HHHHHhc----cCCcCEEEeecCCCC
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ----SVSVGAVIVTKMDGH 253 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~---~~~~~~~----~~~~~~lVinK~D~~ 253 (344)
..++.+.|+||||...... + .......+|.+++|+|++....... ....+.. ...+..+|+||+|+.
T Consensus 363 ~~~~~~~l~Dt~G~~~~~~-----~-~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 436 (497)
T 3lvq_E 363 YKNVKFNVWDVGGQDKIRP-----L-WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 436 (497)
T ss_dssp SSSCEEEEEEECCCGGGSG-----G-GGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSS
T ss_pred eCCEEEEEEECCCcHHHHH-----H-HHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCC
Confidence 1267889999999643221 1 1122346899999999987533222 2222211 124568889999986
Q ss_pred CChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCCCc
Q 019214 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQ 315 (344)
Q Consensus 254 ~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~~~ 315 (344)
.... ........+.+ ... ....+.+.+|+++|+| +++++++|.+.+....
T Consensus 437 ~~~~-~~~~~~~~~~~---------~~~-~~~~~~~~~SA~~g~g-i~~l~~~l~~~~~~~~ 486 (497)
T 3lvq_E 437 DAMK-PHEIQEKLGLT---------RIR-DRNWYVQPSCATSGDG-LYEGLTWLTSNYKSKL 486 (497)
T ss_dssp SCCC-HHHHHHHTTCT---------TCC-SSCEEEEECBTTTTBT-HHHHHHHHHHHCC---
T ss_pred cCCC-HHHHHHHhchh---------hhh-cCCeEEEEEECCCCCC-HHHHHHHHHHHHHhcC
Confidence 5321 11122222211 000 1112456789999999 9999999999886543
No 139
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.09 E-value=4.4e-10 Score=94.19 Aligned_cols=154 Identities=14% Similarity=0.105 Sum_probs=85.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...|+++|++||||||+++++. +.+..-. .....+..+...... ..
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~------~~~~~~~---------------~~~~~~~~~~~~~~~-------------~~ 57 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFV------KDQFVEF---------------QESTIGAAFFSQTLA-------------VN 57 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH------HCCCTTT---------------SCCCSCCSEEEEEEE-------------ET
T ss_pred ceEEEEECcCCCCHHHHHHHHH------cCCCCCc---------------CCCCceeEEEEEEEE-------------EC
Confidence 3579999999999999999998 3221100 000001111000000 00
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHhcc---CCcCEEEeecCCCCC
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQS---VSVGAVIVTKMDGHA 254 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~~~---~~~~~lVinK~D~~~ 254 (344)
...+.+.++||||...... . . ......+|.+++|+|++..... ......+... ..+..+|+||+|+..
T Consensus 58 ~~~~~~~i~Dt~G~~~~~~-~---~--~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 131 (181)
T 2efe_B 58 DATVKFEIWDTAGQERYHS-L---A--PMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLD 131 (181)
T ss_dssp TEEEEEEEEECCCSGGGGG-G---T--HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred CEEEEEEEEeCCCChhhhh-h---h--HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc
Confidence 0145788999999643221 1 0 1113358999999999865321 2222222221 234578899999854
Q ss_pred Ch----hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCC
Q 019214 255 KG----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (344)
Q Consensus 255 ~~----~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~ 313 (344)
.. ..........+. +.+.+|+++|+| +++++++|.+.+..
T Consensus 132 ~~~~~~~~~~~~~~~~~~------------------~~~~~Sa~~g~g-i~~l~~~l~~~~~~ 175 (181)
T 2efe_B 132 ARKVTAEDAQTYAQENGL------------------FFMETSAKTATN-VKEIFYEIARRLPR 175 (181)
T ss_dssp TCCSCHHHHHHHHHHTTC------------------EEEECCSSSCTT-HHHHHHHHHHTCC-
T ss_pred cccCCHHHHHHHHHHcCC------------------EEEEEECCCCCC-HHHHHHHHHHHHHh
Confidence 21 122233332222 234467778999 99999999887754
No 140
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.09 E-value=4.2e-10 Score=93.04 Aligned_cols=105 Identities=17% Similarity=0.143 Sum_probs=61.1
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH---HHHHHhc---cCCcCEEEeecCCCCCCh
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ---SVSVGAVIVTKMDGHAKG 256 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~---~~~~~~~---~~~~~~lVinK~D~~~~~ 256 (344)
.+.+.++||||...... . . ......+|.+++|+|++....... ....+.. ...+..+|.||+|.....
T Consensus 51 ~~~~~~~D~~G~~~~~~-~---~--~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 124 (170)
T 1ek0_A 51 TVKFEIWDTAGQERFAS-L---A--PXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEG 124 (170)
T ss_dssp EEEEEEEEECCSGGGGG-G---H--HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSS
T ss_pred EEEEEEEECCCChhhhh-h---h--hhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccc
Confidence 45678999999753221 1 1 111346799999999986532221 2222221 123457889999985431
Q ss_pred -------hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 257 -------GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 257 -------~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
..........+. +.+.+|+++|.| +++++++|.+.+.
T Consensus 125 ~~~~v~~~~~~~~~~~~~~------------------~~~~~Sa~~~~g-i~~l~~~l~~~i~ 168 (170)
T 1ek0_A 125 GERKVAREEGEKLAEEKGL------------------LFFETSAKTGEN-VNDVFLGIGEKIP 168 (170)
T ss_dssp CCCCSCHHHHHHHHHHHTC------------------EEEECCTTTCTT-HHHHHHHHHTTSC
T ss_pred cccCCCHHHHHHHHHHcCC------------------EEEEEeCCCCCC-HHHHHHHHHHHHh
Confidence 111122222221 234567889999 9999999987764
No 141
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.09 E-value=8.8e-11 Score=99.60 Aligned_cols=155 Identities=16% Similarity=0.082 Sum_probs=86.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
+...|+++|.+||||||+++++. +.+.. +..| + .+.......
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~------~~~~~--~~~~-------------t-~~~~~~~~~---------------- 62 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLH------LGDVV--TTVP-------------T-VGVNLETLQ---------------- 62 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC------CSCCE--EECS-------------S-TTCCEEEEE----------------
T ss_pred CceEEEEECCCCCCHHHHHHHHH------cCCCC--CcCC-------------C-CceEEEEEE----------------
Confidence 34679999999999999999996 43321 1111 0 011100000
Q ss_pred HhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHhc----cCCcCEEEeecCCC
Q 019214 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ----SVSVGAVIVTKMDG 252 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~~----~~~~~~lVinK~D~ 252 (344)
..++.+.++||||...... + .......+|.+++|+|++..... ......+.. ...+..+|+||+|.
T Consensus 63 -~~~~~~~~~Dt~G~~~~~~-----~-~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 135 (189)
T 2x77_A 63 -YKNISFEVWDLGGQTGVRP-----Y-WRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDL 135 (189)
T ss_dssp -ETTEEEEEEEECCSSSSCC-----C-CSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTS
T ss_pred -ECCEEEEEEECCCCHhHHH-----H-HHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCC
Confidence 0156788999999743210 0 00112368999999999865322 222222222 12456888999998
Q ss_pred CCChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 253 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 253 ~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
..... ........+. +..... ..+.+.+|+++|+| ++++++.|.+.+
T Consensus 136 ~~~~~-~~~~~~~~~~--------~~~~~~--~~~~~~~Sa~~~~g-i~~l~~~l~~~i 182 (189)
T 2x77_A 136 PDAAS-EAEIAEQLGV--------SSIMNR--TWTIVKSSSKTGDG-LVEGMDWLVERL 182 (189)
T ss_dssp TTCCC-HHHHHHHTTG--------GGCCSS--CEEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred cCCCC-HHHHHHHhCh--------hhccCC--ceEEEEccCCCccC-HHHHHHHHHHHH
Confidence 65421 1111111110 000000 11345688999999 999999988765
No 142
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.08 E-value=2.3e-10 Score=110.57 Aligned_cols=66 Identities=24% Similarity=0.385 Sum_probs=40.9
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch---------hHHHHHHHHhc-cCCcCEEEeecCCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ---------AAFDQAQAFKQ-SVSVGAVIVTKMDG 252 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~---------~~~~~~~~~~~-~~~~~~lVinK~D~ 252 (344)
++.+.|+||||... +...+. .....+|.+++|+|++.+. ...+.+..... ..+..++|+||+|.
T Consensus 94 ~~~~~iiDTPGh~~----f~~~~~--~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl 167 (439)
T 3j2k_7 94 KKHFTILDAPGHKS----FVPNMI--GGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDD 167 (439)
T ss_pred CeEEEEEECCChHH----HHHHHH--hhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCC
Confidence 67889999999753 222221 2233689999999998762 22332222222 23324788999998
Q ss_pred CC
Q 019214 253 HA 254 (344)
Q Consensus 253 ~~ 254 (344)
..
T Consensus 168 ~~ 169 (439)
T 3j2k_7 168 PT 169 (439)
T ss_pred cc
Confidence 53
No 143
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.08 E-value=2.4e-10 Score=109.21 Aligned_cols=112 Identities=17% Similarity=0.119 Sum_probs=65.9
Q ss_pred CCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch---hHHHHHHHHhc-cCCcCEEEeecCCCCCChh--
Q 019214 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ---AAFDQAQAFKQ-SVSVGAVIVTKMDGHAKGG-- 257 (344)
Q Consensus 184 ~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~---~~~~~~~~~~~-~~~~~~lVinK~D~~~~~~-- 257 (344)
..+.|+||||...... .+ ......+|.+++|+|++.+. ...+....... ...+..+|+||+|+.....
T Consensus 75 ~~~~iiDtPGh~~~~~----~~--~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~ 148 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMA----TM--LSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEAL 148 (403)
T ss_dssp EEEEEEECCCCGGGHH----HH--HHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHH
T ss_pred ceEEEEECCCcHHHHH----HH--HHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHH
Confidence 5688999999754322 22 12234689999999998752 22222222221 2234578899999975431
Q ss_pred hHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCC
Q 019214 258 GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (344)
Q Consensus 258 ~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~ 313 (344)
...+.+...- ... .....+.+.+|+++|+| ++.|++.|.+.++.
T Consensus 149 ~~~~~i~~~l---------~~~--~~~~~~ii~vSA~~g~g-i~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 149 SQYRQIKQFT---------KGT--WAENVPIIPVSALHKIN-IDSLIEGIEEYIKT 192 (403)
T ss_dssp HHHHHHHHHH---------TTS--TTTTCCEEECBTTTTBS-HHHHHHHHHHHSCC
T ss_pred HHHHHHHHHH---------Hhh--CCCCCEEEEEECCCCcC-hHHHHHHHHHhCCC
Confidence 1122221100 000 01123456788999999 99999999987653
No 144
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.08 E-value=2.5e-10 Score=97.11 Aligned_cols=152 Identities=14% Similarity=0.054 Sum_probs=84.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...|+++|++||||||+++.|. +.+.......+ .+..+...... ..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~------~~~~~~~~~~t---------------~~~~~~~~~~~-------------~~ 70 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFT------RNEFSHDSRTT---------------IGVEFSTRTVM-------------LG 70 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHH------HSCCCSSCCCC---------------SSEEEEEEEEE-------------ET
T ss_pred ceEEEEECcCCCCHHHHHHHHh------cCCCCCCCCCc---------------cceeEEEEEEE-------------EC
Confidence 3679999999999999999998 43322111100 01111000000 00
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHhc---cCCcCEEEeecCCCCC
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ---SVSVGAVIVTKMDGHA 254 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~~---~~~~~~lVinK~D~~~ 254 (344)
..++.+.|+||||...... . . ......+|.+++|+|++..... ......+.. ...+..+|+||+|+..
T Consensus 71 ~~~~~~~i~Dt~G~~~~~~-~---~--~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 144 (193)
T 2oil_A 71 TAAVKAQIWDTAGLERYRA-I---T--SAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQ 144 (193)
T ss_dssp TEEEEEEEEEESCCCTTCT-T---H--HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGG
T ss_pred CEEEEEEEEeCCCchhhhh-h---h--HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCccc
Confidence 0146678999999754221 1 0 1113468999999999865322 222222222 1234578899999854
Q ss_pred Ch----hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 255 KG----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 255 ~~----~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
.. ..........+. +.+.+|+++|+| ++++++.|.+.+
T Consensus 145 ~~~~~~~~~~~~~~~~~~------------------~~~~~Sa~~~~g-i~~l~~~l~~~i 186 (193)
T 2oil_A 145 AREVPTEEARMFAENNGL------------------LFLETSALDSTN-VELAFETVLKEI 186 (193)
T ss_dssp GCCSCHHHHHHHHHHTTC------------------EEEEECTTTCTT-HHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHcCC------------------EEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 21 112222222222 233467778999 999999887654
No 145
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.08 E-value=6.7e-11 Score=100.94 Aligned_cols=154 Identities=14% Similarity=0.130 Sum_probs=81.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...|+++|.+||||||++++|. +.+...... ...+..+...... ..
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~------~~~~~~~~~---------------~t~~~~~~~~~~~-------------~~ 71 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFT------DDTFCEACK---------------STVGVDFKIKTVE-------------LR 71 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHC------C-----------------------CCTTEEEEEEEEE-------------ET
T ss_pred ceEEEEECCCCCCHHHHHHHHh------cCCCCcCCC---------------CccceeEEEEEEE-------------EC
Confidence 3569999999999999999998 433211000 0001111000000 00
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHH---H---HHHHHhccCCcCEEEeecCCCCC
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---D---QAQAFKQSVSVGAVIVTKMDGHA 254 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~---~---~~~~~~~~~~~~~lVinK~D~~~ 254 (344)
...+.+.++||||...... . .... ...+|.+++|+|++...... . ....+.....+..+|+||+|+..
T Consensus 72 ~~~~~l~l~Dt~G~~~~~~-~---~~~~--~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~ 145 (192)
T 2il1_A 72 GKKIRLQIWDTAGQERFNS-I---TSAY--YRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET 145 (192)
T ss_dssp TEEEEEEEEEECCSGGGHH-H---HHHH--HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred CeEEEEEEEeCCCcHHHHH-H---HHHH--hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 0135778999999754321 1 1111 23579999999998653221 1 12222222345588899999854
Q ss_pred Ch---hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 255 KG---GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 255 ~~---~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
.. ......+.. .. ...+.+.+|+++|+| ++++++.|.+.+
T Consensus 146 ~~~v~~~~~~~~~~------------~~----~~~~~~~~SA~~g~g-i~~l~~~l~~~i 188 (192)
T 2il1_A 146 DREITRQQGEKFAQ------------QI----TGMRFCEASAKDNFN-VDEIFLKLVDDI 188 (192)
T ss_dssp GCCSCHHHHHHHHH------------TS----TTCEEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHH------------hc----CCCeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 21 111112221 00 012334578889999 999999887643
No 146
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.08 E-value=5.3e-10 Score=95.86 Aligned_cols=151 Identities=15% Similarity=0.066 Sum_probs=83.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
..|+++|++||||||++++|. +.+...... + ..+..+...... ...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~------~~~~~~~~~----~-----------t~~~~~~~~~~~-------------~~~ 54 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYA------DDSFTPAFV----S-----------TVGIDFKVKTIY-------------RND 54 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHH------TCCCCSCCC----C-----------CCSEEEEEEEEE-------------ETT
T ss_pred eEEEEECCCCCCHHHHHHHHh------cCCCCCCcC----C-----------ccceeEEEEEEE-------------ECC
Confidence 579999999999999999998 543210000 0 001111000000 000
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHhc---cCCcCEEEeecCCCCCC
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ---SVSVGAVIVTKMDGHAK 255 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~~---~~~~~~lVinK~D~~~~ 255 (344)
..+.+.++||||...... . . ......+|.+++|+|++..... ......+.. ...+..+|+||+|+...
T Consensus 55 ~~~~~~l~Dt~G~~~~~~-~---~--~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (203)
T 1zbd_A 55 KRIKLQIWDTAGLERYRT-I---T--TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 128 (203)
T ss_dssp EEEEEEEEEECCSGGGHH-H---H--HTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTS
T ss_pred eEEEEEEEECCCchhhcc-h---H--HHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcc
Confidence 145778999999853221 1 1 1223468999999999865322 112222222 23455788999998642
Q ss_pred h----hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 256 G----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 256 ~----~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
. ..........+.| .+.+|+++|.| +++++++|.+.+
T Consensus 129 ~~~~~~~~~~~~~~~~~~------------------~~~~Sa~~~~g-i~~l~~~l~~~i 169 (203)
T 1zbd_A 129 RVVSSERGRQLADHLGFE------------------FFEASAKDNIN-VKQTFERLVDVI 169 (203)
T ss_dssp CCSCHHHHHHHHHHHTCE------------------EEECBTTTTBS-SHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHCCCe------------------EEEEECCCCCC-HHHHHHHHHHHH
Confidence 1 1222333333332 23456677888 888887776644
No 147
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.07 E-value=1.1e-10 Score=108.87 Aligned_cols=156 Identities=13% Similarity=0.116 Sum_probs=87.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccC-CcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKA-KIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~-~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
.|+++|.|||||||+++.|. +.++.+-+ .++++.. .+..... .
T Consensus 160 ~V~lvG~~nvGKSTLln~L~------~~~~~i~~------------~~ftTl~p~~g~v~~-~----------------- 203 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVS------SAKPKIAD------------YHFTTLVPNLGMVET-D----------------- 203 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSE------EECCEESS------------TTSSCCCCCEEEEEC-S-----------------
T ss_pred eeeeeCCCCCCHHHHHHHHH------cCCCcccc------------CCccccCceEEEEEe-C-----------------
Confidence 48899999999999999998 55544322 1222221 1111110 0
Q ss_pred CCCCEEEEcCCCCCcc---hHHHHHHHHHhhhhcCCcEEEEEEcCCc---c--hhHHH-HHHHHhc-----cCCcCEEEe
Q 019214 182 ENCDLIIVDTSGRHKQ---EAALFEEMRQVSEATNPDLVIFVMDSSI---G--QAAFD-QAQAFKQ-----SVSVGAVIV 247 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~---~~~~~~~l~~~~~~~~~d~illvvda~~---~--~~~~~-~~~~~~~-----~~~~~~lVi 247 (344)
.+..++|+||||.... ...+.... +.....+|.+++|+|++. . .+... ....+.. ...+..+|+
T Consensus 204 ~~~~~~l~DtPG~i~~a~~~~~l~~~f--l~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~ 281 (342)
T 1lnz_A 204 DGRSFVMADLPGLIEGAHQGVGLGHQF--LRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVA 281 (342)
T ss_dssp SSCEEEEEEHHHHHHHTTCTTTTHHHH--HHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEE
T ss_pred CCceEEEecCCCCcccccccchhHHHH--HHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEE
Confidence 1367899999995321 00111111 111224789999999975 2 11111 2222221 124568899
Q ss_pred ecCCCCCChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCC
Q 019214 248 TKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (344)
Q Consensus 248 nK~D~~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~ 313 (344)
||+|...............+ ...+.+.+|+++|+| +++|++.|.+.+..
T Consensus 282 NK~Dl~~~~e~~~~l~~~l~----------------~~~~v~~iSA~tg~g-i~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 282 NKMDMPEAAENLEAFKEKLT----------------DDYPVFPISAVTREG-LRELLFEVANQLEN 330 (342)
T ss_dssp ECTTSTTHHHHHHHHHHHCC----------------SCCCBCCCSSCCSST-THHHHHHHHHHHTS
T ss_pred ECccCCCCHHHHHHHHHHhh----------------cCCCEEEEECCCCcC-HHHHHHHHHHHHhh
Confidence 99998754222222222111 002345678999999 99999999887754
No 148
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.07 E-value=1.5e-11 Score=106.09 Aligned_cols=169 Identities=14% Similarity=0.036 Sum_probs=85.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
+...|+++|.+||||||+++++.. ... ... +.+ +............
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~------~~~--~~~--~~~---------t~~~~~~~~~~~~--------------- 74 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTT------NAF--PGE--YIP---------TVFDNYSANVMVD--------------- 74 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHH------SCC--CC---CCC---------CSEEEEEEEEECC---------------
T ss_pred CeEEEEEECcCCCCHHHHHHHHHh------CCC--CCC--cCC---------eecceeEEEEEEC---------------
Confidence 446799999999999999999983 211 000 000 0000000000011
Q ss_pred HhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH----HHHHHhcc--CCcCEEEeecCCCC
Q 019214 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQS--VSVGAVIVTKMDGH 253 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~----~~~~~~~~--~~~~~lVinK~D~~ 253 (344)
...+.+.++||||..... .+ .......+|.+++|+|++....... ....+... ..+..+|.||+|+.
T Consensus 75 -~~~~~l~i~Dt~G~~~~~-----~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 147 (204)
T 4gzl_A 75 -GKPVNLGLWDTAGLEDYD-----RL-RPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 147 (204)
T ss_dssp --CEEEEEEEEECCSGGGT-----TT-GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHH
T ss_pred -CEEEEEEEEECCCchhhH-----HH-HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhc
Confidence 013556699999974321 01 1112346899999999986532222 22222221 34558889999986
Q ss_pred CChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 254 ~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
..... .+..............+.....-....+.+.+|+++|+| ++++++.|.+.+
T Consensus 148 ~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~g-i~~l~~~l~~~~ 203 (204)
T 4gzl_A 148 DDKDT-IEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG-LKTVFDEAIRAV 203 (204)
T ss_dssp TCHHH-HHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTT-HHHHHHHHHHTT
T ss_pred cchhh-hhhhhccccccccHHHHHHHHHhcCCcEEEEeeCCCCCC-HHHHHHHHHHHh
Confidence 54321 111111100000000000000000112345678999999 999999987653
No 149
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.06 E-value=2.7e-10 Score=112.34 Aligned_cols=135 Identities=16% Similarity=0.171 Sum_probs=65.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
.+.|+++|.+|+||||++++|+......+....+.+.++++....+... .....++.+..... .+.
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~-~E~~rGiTi~~~~~-------------~~~ 78 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWME-MEKQRGISITTSVM-------------QFP 78 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC--------------------------------CCTTEE-------------EEE
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccch-hcccCCcceeeeEE-------------EEE
Confidence 4679999999999999999998421111111112222222211111000 00011111100000 001
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchh--HHHHHHHHhccCCcCEEEeecCCCCCC
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAFKQSVSVGAVIVTKMDGHAK 255 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~--~~~~~~~~~~~~~~~~lVinK~D~~~~ 255 (344)
..++.+.|+||||........ . .....+|.+++|+|++.+.. .............+..+|+||+|....
T Consensus 79 ~~~~~i~liDTPG~~df~~~~----~--~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 79 YHDCLVNLLDTPGHEDFSEDT----Y--RTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIR 149 (529)
T ss_dssp ETTEEEEEECCCCSTTCCHHH----H--HGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCS
T ss_pred ECCeEEEEEECCCChhHHHHH----H--HHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccc
Confidence 126788999999986533221 1 12345899999999987632 222223332222345788999998654
No 150
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.06 E-value=1.5e-10 Score=96.70 Aligned_cols=153 Identities=13% Similarity=0.064 Sum_probs=82.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...|+++|++||||||+++++. +.+.. ... .+ ..+..+....... .
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~------~~~~~-~~~-----------~~---~~~~~~~~~~~~~-------------~ 52 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYV------TNKFD-TQL-----------FH---TIGVEFLNKDLEV-------------D 52 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH------HSCCC-C------------------CCSEEEEEEEEEE-------------T
T ss_pred eeEEEEECCCCCCHHHHHHHHH------cCCCC-CCC-----------CC---ceeeeEEEEEEEE-------------C
Confidence 3579999999999999999998 32211 000 00 0111110000000 0
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHH---Hhc----cCCcCEEEeecC
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQA---FKQ----SVSVGAVIVTKM 250 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~---~~~----~~~~~~lVinK~ 250 (344)
...+.+.++||||..... .+. ......+|.+++|+|++..... ...... ... ...+..+|+||+
T Consensus 53 ~~~~~~~i~Dt~G~~~~~-----~~~-~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~ 126 (177)
T 1wms_A 53 GHFVTMQIWDTAGQERFR-----SLR-TPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 126 (177)
T ss_dssp TEEEEEEEEECCCCGGGH-----HHH-GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECT
T ss_pred CEEEEEEEEeCCCchhhh-----hhH-HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECC
Confidence 013567899999975322 111 1223468999999999865321 111222 211 123457889999
Q ss_pred CCCCCh---hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 251 DGHAKG---GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 251 D~~~~~---~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
|..... .......... ...+.+.+|+++|.| ++++++.+.+.+
T Consensus 127 Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 172 (177)
T 1wms_A 127 DISERQVSTEEAQAWCRDN-----------------GDYPYFETSAKDATN-VAAAFEEAVRRV 172 (177)
T ss_dssp TCSSCSSCHHHHHHHHHHT-----------------TCCCEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred cccccccCHHHHHHHHHhc-----------------CCceEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 986321 1122222210 112334567889999 999999887654
No 151
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.06 E-value=5.3e-10 Score=96.42 Aligned_cols=153 Identities=12% Similarity=0.054 Sum_probs=82.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
....|+++|++||||||+++.|. +.+... .. .+ ..+..+.......
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~------~~~~~~-~~---~~-----------~~~~~~~~~~~~~------------- 64 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFV------EDKFNP-SF---IT-----------TIGIDFKIKTVDI------------- 64 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHH------HCCCCC-SS---SC-----------CCSCCEEEEEEEE-------------
T ss_pred cceEEEEECCCCCCHHHHHHHHH------hCCCCc-cc---CC-----------cccceEEEEEEEE-------------
Confidence 34679999999999999999998 433210 00 00 0011110000000
Q ss_pred HhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHhc---cCCcCEEEeecCCCC
Q 019214 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ---SVSVGAVIVTKMDGH 253 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~~---~~~~~~lVinK~D~~ 253 (344)
....+.+.|+||||....... . ......+|.+++|+|++..... ......+.. ...+..+|+||+|+.
T Consensus 65 ~~~~~~~~l~Dt~G~~~~~~~----~--~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 138 (213)
T 3cph_A 65 NGKKVKLQLWDTAGQERFRTI----T--TAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 138 (213)
T ss_dssp TTEEEEEEEECCTTGGGGTCC----C--HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS
T ss_pred CCEEEEEEEEeCCCcHHHHHH----H--HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 001357889999996432110 0 1113468999999999865321 122222221 123457889999984
Q ss_pred CCh---hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 254 AKG---GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 254 ~~~---~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
... ..........+.| .+.+|+++|+| +++++++|.+.+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~------------------~~~~Sa~~~~g-i~~l~~~l~~~~ 180 (213)
T 3cph_A 139 TRVVTADQGEALAKELGIP------------------FIESSAKNDDN-VNEIFFTLAKLI 180 (213)
T ss_dssp SCCSCHHHHHHHHHHHTCC------------------EEECBTTTTBS-SHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHcCCE------------------EEEEeCCCCCC-HHHHHHHHHHHH
Confidence 321 1222333333332 23456678888 888888877654
No 152
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.06 E-value=1.4e-10 Score=97.09 Aligned_cols=152 Identities=14% Similarity=0.075 Sum_probs=82.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
+...|+++|.+||||||++++|. +... ... +. .+ .+..+.......
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~------~~~~--~~~--~~---------~t--~~~~~~~~~~~~------------- 53 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFI------QSYF--VSD--YD---------PT--IEDSYTKICSVD------------- 53 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHH------HSSC--CSS--CC---------TT--CCEEEEEEEEET-------------
T ss_pred CceEEEEECCCCCCHHHHHHHHH------hCcC--ccc--cC---------CC--cCceEEEEEEEC-------------
Confidence 34679999999999999999998 3321 110 00 00 011100000000
Q ss_pred HhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHH----hccCCcCEEEeecCCC
Q 019214 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAF----KQSVSVGAVIVTKMDG 252 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~----~~~~~~~~lVinK~D~ 252 (344)
...+.+.++||||...... .. ... ...+|.+++|+|++..... ......+ .....+..+|+||+|+
T Consensus 54 -~~~~~~~~~Dt~G~~~~~~-~~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 126 (181)
T 2fn4_A 54 -GIPARLDILDTAGQEEFGA-MR---EQY--MRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADL 126 (181)
T ss_dssp -TEEEEEEEEECCCTTTTSC-CH---HHH--HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGG
T ss_pred -CEEEEEEEEECCCchhhHH-HH---HHH--HhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 0135678999999753221 10 011 1247899999999864221 1112222 1222345889999998
Q ss_pred CCCh----hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 253 HAKG----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 253 ~~~~----~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
.... ..........+. +.+.+|+++|+| ++++++.|.+.+
T Consensus 127 ~~~~~v~~~~~~~~~~~~~~------------------~~~~~Sa~~~~g-v~~l~~~l~~~~ 170 (181)
T 2fn4_A 127 ESQRQVPRSEASAFGASHHV------------------AYFEASAKLRLN-VDEAFEQLVRAV 170 (181)
T ss_dssp GGGCCSCHHHHHHHHHHTTC------------------EEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHcCC------------------eEEEecCCCCCC-HHHHHHHHHHHH
Confidence 5421 111122222121 234567788999 999999887654
No 153
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.05 E-value=5.7e-10 Score=95.27 Aligned_cols=151 Identities=11% Similarity=0.057 Sum_probs=82.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
+...|+++|.+||||||++++|. +.+..- . +.+ .........+. ..
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~------~~~~~~-~---~~~-------t~~~~~~~~~~--~~--------------- 72 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFL------TKRFIW-E---YDP-------TLESTYRHQAT--ID--------------- 72 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH------HSCCCS-C---CCT-------TCCEEEEEEEE--ET---------------
T ss_pred CceEEEEECCCCCCHHHHHHHHH------hCCCCc-c---cCC-------CCCceEEEEEE--EC---------------
Confidence 34679999999999999999998 332210 0 000 00000000000 00
Q ss_pred HhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---H---HHHHHHhc-cCCcCEEEeecCCC
Q 019214 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---F---DQAQAFKQ-SVSVGAVIVTKMDG 252 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~---~~~~~~~~-~~~~~~lVinK~D~ 252 (344)
...+.+.++||||... . ... .. ....+|.+++|+|++..... . .....+.. ...+..+|.||+|+
T Consensus 73 -~~~~~~~l~Dt~G~~~-~-~~~---~~--~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl 144 (196)
T 2atv_A 73 -DEVVSMEILDTAGQED-T-IQR---EG--HMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADL 144 (196)
T ss_dssp -TEEEEEEEEECCCCCC-C-HHH---HH--HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGG
T ss_pred -CEEEEEEEEECCCCCc-c-cch---hh--hhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECccc
Confidence 0146678999999865 1 111 11 12347999999999864221 1 11222221 22345788999998
Q ss_pred CCC----hhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCC-CChhHHHHHHHhhC
Q 019214 253 HAK----GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGM-GDWSGFMDKIHEVV 311 (344)
Q Consensus 253 ~~~----~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~-g~i~~l~~~i~~~~ 311 (344)
... ...........+. +.+.+|+++|. | +++++++|.+.+
T Consensus 145 ~~~~~v~~~~~~~~~~~~~~------------------~~~~~Sa~~g~~g-i~~l~~~l~~~i 189 (196)
T 2atv_A 145 DHSRQVSTEEGEKLATELAC------------------AFYECSACTGEGN-ITEIFYELCREV 189 (196)
T ss_dssp GGGCCSCHHHHHHHHHHHTS------------------EEEECCTTTCTTC-HHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHhCC------------------eEEEECCCcCCcC-HHHHHHHHHHHH
Confidence 542 1122222222222 23346777898 8 999999887654
No 154
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.05 E-value=3.2e-10 Score=93.67 Aligned_cols=152 Identities=14% Similarity=0.129 Sum_probs=82.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...|+++|++||||||++++|. +.... .+ +.+ ..+..+...... ..
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~------~~~~~---~~-~~~-----------t~~~~~~~~~~~-------------~~ 50 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYC------KGIFT---KD-YKK-----------TIGVDFLERQIQ-------------VN 50 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------HCCCC---CC-SSC-----------CCSSSEEEEEEE-------------ET
T ss_pred eEEEEEECcCCCCHHHHHHHHH------cCCCC---CC-CCC-----------ceEEEEEEEEEE-------------EC
Confidence 3578999999999999999998 33211 00 000 001111000000 00
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHhc--cCCcCEEEeecCCCCCC
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ--SVSVGAVIVTKMDGHAK 255 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~~--~~~~~~lVinK~D~~~~ 255 (344)
...+.+.++||||...... . . ......+|.+++|+|++..... ......+.. ...+..+|+||+|....
T Consensus 51 ~~~~~~~l~Dt~G~~~~~~-~---~--~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 124 (168)
T 1z2a_A 51 DEDVRLMLWDTAGQEEFDA-I---T--KAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDD 124 (168)
T ss_dssp TEEEEEEEECCTTGGGTTC-C---C--HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGG
T ss_pred CEEEEEEEEcCCCcHhHHH-H---H--HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcc
Confidence 0145788999999642210 0 0 0112368999999999864321 112222211 12345889999998542
Q ss_pred ----hhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 256 ----GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 256 ----~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
...........+. +.+.+|++.|.| ++++++.|.+.+
T Consensus 125 ~~~~~~~~~~~~~~~~~------------------~~~~~Sa~~~~~-i~~l~~~l~~~~ 165 (168)
T 1z2a_A 125 SCIKNEEAEGLAKRLKL------------------RFYRTSVKEDLN-VSEVFKYLAEKH 165 (168)
T ss_dssp CSSCHHHHHHHHHHHTC------------------EEEECBTTTTBS-SHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCC------------------eEEEEecCCCCC-HHHHHHHHHHHH
Confidence 1222233333332 234467778899 999998887643
No 155
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=99.05 E-value=1.4e-09 Score=103.72 Aligned_cols=43 Identities=16% Similarity=0.104 Sum_probs=37.6
Q ss_pred CCCeEEEEE-cCCCCCHHHHHHHHHHHHH------HcCCccEEeecCcCc
Q 019214 99 GKPSVIMFV-GLQGSGKTTTCTKYAYYHQ------KKGWKPALVCADTFR 141 (344)
Q Consensus 99 ~~~~ii~iv-G~~GvGKTTl~~~La~~l~------~~g~~v~iv~~D~~~ 141 (344)
.++++|+|+ |++||||||++.+||..|+ +.|++|++||+|++.
T Consensus 106 ~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q~ 155 (398)
T 3ez2_A 106 SEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQS 155 (398)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTTC
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCC
Confidence 456888888 6679999999999999998 469999999999964
No 156
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.05 E-value=8.2e-10 Score=93.78 Aligned_cols=132 Identities=17% Similarity=0.114 Sum_probs=68.1
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcc--EEeecCcCcchhHHHHHhhccc
Q 019214 77 QAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKP--ALVCADTFRAGAFDQLKQNATK 154 (344)
Q Consensus 77 ~~l~~~l~~~l~~~~~~~~~~~~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v--~iv~~D~~~~~~~~~l~~~~~~ 154 (344)
..+...+.+++....... ..+...|+++|++||||||+++.|. +... .+.+. .+..+
T Consensus 27 ~~l~~~l~~~~~~~~~~~---~~~~~~i~vvG~~g~GKSsll~~l~------~~~~~~~~~~~-----------~~~~~- 85 (193)
T 2ged_A 27 SQWREWIDEKLGGGSGGG---GSYQPSIIIAGPQNSGKTSLLTLLT------TDSVRPTVVSQ-----------EPLSA- 85 (193)
T ss_dssp HHHHHHHHHHC-----------CCCCEEEEECCTTSSHHHHHHHHH------HSSCC-----------------------
T ss_pred HHHHHHHHHHHHhhcCCC---CCCCCEEEEECCCCCCHHHHHHHHh------cCCCCcccccC-----------CCcee-
Confidence 345555555554332211 1234679999999999999999998 4321 11111 00000
Q ss_pred CCcceeccCCCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCC-cchhHH---
Q 019214 155 AKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSS-IGQAAF--- 230 (344)
Q Consensus 155 ~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~-~~~~~~--- 230 (344)
.. . .++.+.++||||...........+... ...+|.+++|+|++ ......
T Consensus 86 --~~----~------------------~~~~~~l~Dt~G~~~~~~~~~~~~~~~--~~~~~~~i~v~d~~~~~~~~~~~~ 139 (193)
T 2ged_A 86 --AD----Y------------------DGSGVTLVDFPGHVKLRYKLSDYLKTR--AKFVKGLIFMVDSTVDPKKLTTTA 139 (193)
T ss_dssp ---C----C------------------CCTTCSEEEETTCCBSSCCHHHHHHHH--GGGEEEEEEEEETTCCHHHHHHHH
T ss_pred --ee----e------------------cCCeEEEEECCCCchHHHHHHHHHHhh--cccCCEEEEEEECCCCchhHHHHH
Confidence 00 0 156778999999854322222222211 12368999999998 332211
Q ss_pred HHHHHHh-------ccCCcCEEEeecCCCCCC
Q 019214 231 DQAQAFK-------QSVSVGAVIVTKMDGHAK 255 (344)
Q Consensus 231 ~~~~~~~-------~~~~~~~lVinK~D~~~~ 255 (344)
.....+. ....+..+|+||+|....
T Consensus 140 ~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 140 EFLVDILSITESSCENGIDILIACNKSELFTA 171 (193)
T ss_dssp HHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred HHHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence 1111111 112445788999998643
No 157
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.05 E-value=1.7e-11 Score=120.66 Aligned_cols=162 Identities=17% Similarity=0.146 Sum_probs=89.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
++.+|+++|.+|+|||||+++|...-...+... ..+.. +..+....
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~------------------giT~~-i~~~~v~~--------------- 48 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAG------------------GITQH-IGAFLVSL--------------- 48 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSC------------------CBCCC-TTSCCBCS---------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCC------------------ceeEE-EeEEEEEe---------------
Confidence 346799999999999999999984322211110 00110 00000000
Q ss_pred HhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc--hhHHHHHHHHhccCCcCEEEeecCCCCCCh-
Q 019214 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QAAFDQAQAFKQSVSVGAVIVTKMDGHAKG- 256 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~--~~~~~~~~~~~~~~~~~~lVinK~D~~~~~- 256 (344)
..+..+.|+||||...... + .......+|.+++|+|++.+ ....+..........+..+|+||+|.....
T Consensus 49 -~~g~~i~~iDTPGhe~f~~-----~-~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~ 121 (537)
T 3izy_P 49 -PSGEKITFLDTPGHAAFSA-----M-RARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADP 121 (537)
T ss_dssp -SCSSCCBCEECSSSCCTTT-----S-BBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSC
T ss_pred -CCCCEEEEEECCChHHHHH-----H-HHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccch
Confidence 0145678999999753221 0 01123358999999999876 233333333333323457889999985321
Q ss_pred hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 257 ~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
......+...+ ....+.....+.+.+|+++|+| +++|++.+...++
T Consensus 122 ~~v~~~l~~~~---------~~~e~~~~~~~iv~vSAktG~G-I~eLle~I~~l~~ 167 (537)
T 3izy_P 122 EKVKKELLAYD---------VVCEDYGGDVQAVHVSALTGEN-MMALAEATIALAE 167 (537)
T ss_dssp CSSSSHHHHTT---------SCCCCSSSSEEECCCCSSSSCS-SHHHHHHHHHHHT
T ss_pred HHHHHHHHhhh---------hhHHhcCCCceEEEEECCCCCC-chhHHHHHHHhhh
Confidence 11111111111 1111111223566789999999 9999999887643
No 158
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.05 E-value=4.6e-11 Score=103.80 Aligned_cols=158 Identities=15% Similarity=0.038 Sum_probs=83.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccE-EeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPA-LVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~-iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 178 (344)
....|+++|.+||||||++++|. +.+.. -... ..........+.. ...
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~------~~~~~~~~~~-----------t~~~~~~~~~~~~-~~~------------- 58 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVL------DGRFEKNYNA-----------TVGAVNHPVTFLD-DQG------------- 58 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCT------TCSTTCEEET-----------TTTEEEEEEEEEB-TTS-------------
T ss_pred CccEEEEECCCCCCHHHHHHHHh------cCCCCCCCCC-----------ccceeeEEEEEEe-CCC-------------
Confidence 34679999999999999999998 54321 1111 0000111111111 000
Q ss_pred HHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHH---HH---HHHHhccCCcCEEEeecCCC
Q 019214 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQ---AQAFKQSVSVGAVIVTKMDG 252 (344)
Q Consensus 179 ~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~---~~---~~~~~~~~~~~~lVinK~D~ 252 (344)
..+.+.++||||...... . .......+|.+++|+|++...... .. .........+..+|+||+|+
T Consensus 59 ---~~~~~~l~Dt~G~~~~~~-~-----~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 129 (218)
T 4djt_A 59 ---NVIKFNVWDTAGQEKKAV-L-----KDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDI 129 (218)
T ss_dssp ---CEEEEEEEEECSGGGTSC-C-----CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTC
T ss_pred ---cEEEEEEEecCCchhhch-H-----HHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC
Confidence 025688999999642210 0 001133589999999998753221 12 22222222355888999998
Q ss_pred CCChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 253 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 253 ~~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
............... . ....+.+.+|+++|.| ++++++.|.+.+.
T Consensus 130 ~~~~~~~~~~~~~~~---------~-----~~~~~~~~~Sa~~g~g-v~~l~~~l~~~~~ 174 (218)
T 4djt_A 130 KNRQKISKKLVMEVL---------K-----GKNYEYFEISAKTAHN-FGLPFLHLARIFT 174 (218)
T ss_dssp C----CCHHHHHHHT---------T-----TCCCEEEEEBTTTTBT-TTHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHH---------H-----HcCCcEEEEecCCCCC-HHHHHHHHHHHHh
Confidence 653211111111100 0 0112345578888999 9999988887653
No 159
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.04 E-value=4.3e-11 Score=102.89 Aligned_cols=153 Identities=16% Similarity=0.093 Sum_probs=83.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceec---cCCCCCHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYG---SYTESDPVRIAVEGV 176 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~---~~~~~~~~~~~~~~l 176 (344)
....|+++|++||||||+++.|. +.+... .+.+ ..+..+.. ...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~------~~~~~~----~~~~-----------t~~~~~~~~~~~~~------------ 53 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYV------NKKFSN----QYKA-----------TIGADFLTKEVMVD------------ 53 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHH------HSCCCS----SCCC-----------CCSEEEEEEEEESS------------
T ss_pred cceEEEEECcCCCCHHHHHHHHH------cCCCCC----CCCC-----------cccceEEEEEEEEC------------
Confidence 34679999999999999999998 332210 0000 00111100 000
Q ss_pred HHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHhc-------cCCcCEEE
Q 019214 177 ETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ-------SVSVGAVI 246 (344)
Q Consensus 177 ~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~~-------~~~~~~lV 246 (344)
...+.+.|+||||...... + .......+|.+++|+|++..... ......+.. ...+..+|
T Consensus 54 ----~~~~~~~l~Dt~G~~~~~~-----~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv 123 (207)
T 1vg8_A 54 ----DRLVTMQIWDTAGQERFQS-----L-GVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL 123 (207)
T ss_dssp ----SCEEEEEEEEECSSGGGSC-----S-CCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEE
T ss_pred ----CEEEEEEEEeCCCcHHHHH-----h-HHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEE
Confidence 0135788999999642110 0 01123468999999999865321 111221111 12345889
Q ss_pred eecCCCCCCh--hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 247 VTKMDGHAKG--GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 247 inK~D~~~~~--~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
+||+|+.... ........... ...+.+.+|+++|.| +++++++|.+.+.
T Consensus 124 ~nK~Dl~~~~~~~~~~~~~~~~~----------------~~~~~~~~Sa~~g~g-i~~l~~~l~~~~~ 174 (207)
T 1vg8_A 124 GNKIDLENRQVATKRAQAWCYSK----------------NNIPYFETSAKEAIN-VEQAFQTIARNAL 174 (207)
T ss_dssp EECTTSSCCCSCHHHHHHHHHHT----------------TSCCEEECBTTTTBS-HHHHHHHHHHHHH
T ss_pred EECCCCcccccCHHHHHHHHHhc----------------CCceEEEEeCCCCCC-HHHHHHHHHHHHH
Confidence 9999986321 11111111100 112335577889999 9999999887653
No 160
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.04 E-value=6.6e-10 Score=94.44 Aligned_cols=152 Identities=14% Similarity=0.040 Sum_probs=82.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...|+++|.+||||||+++.|. +.+...... .. .+..+...... ..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~------~~~~~~~~~-----------~t----~~~~~~~~~~~-------------~~ 66 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFT------DKRFQPVHD-----------LT----IGVEFGARMVN-------------ID 66 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHH------HSCCCC--------------------CCSSEEEEEEE-------------ET
T ss_pred ceEEEEECcCCCCHHHHHHHHh------cCCCCCCCC-----------Cc----ccceeEEEEEE-------------EC
Confidence 4579999999999999999998 332211110 00 01110000000 00
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHhc---cCCcCEEEeecCCCCC
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ---SVSVGAVIVTKMDGHA 254 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~~---~~~~~~lVinK~D~~~ 254 (344)
...+.+.++||||...... . . ......+|.+++|+|++..... ......+.. ...+..+|+||+|+..
T Consensus 67 ~~~~~~~i~Dt~G~~~~~~-~---~--~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 140 (191)
T 2a5j_A 67 GKQIKLQIWDTAGQESFRS-I---T--RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLES 140 (191)
T ss_dssp TEEEEEEEECCTTGGGTSC-C---C--HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred CEEEEEEEEECCCchhhhh-h---H--HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCC
Confidence 0135778999999632110 0 0 1112368999999999865322 122222221 1234578899999853
Q ss_pred C----hhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 255 K----GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 255 ~----~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
. ...........+.| .+.+|+++|+| ++++++.|.+.+
T Consensus 141 ~~~v~~~~~~~~~~~~~~~------------------~~~~Sa~~~~g-i~~l~~~l~~~i 182 (191)
T 2a5j_A 141 RRDVKREEGEAFAREHGLI------------------FMETSAKTACN-VEEAFINTAKEI 182 (191)
T ss_dssp GCCSCHHHHHHHHHHHTCE------------------EEEECTTTCTT-HHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHcCCE------------------EEEEeCCCCCC-HHHHHHHHHHHH
Confidence 2 11222333333322 23456778999 999998887654
No 161
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.04 E-value=2.3e-10 Score=96.49 Aligned_cols=152 Identities=14% Similarity=0.047 Sum_probs=82.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...|+++|++||||||+++++. +.+...... + ..+..+....... .
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~------~~~~~~~~~----~-----------~~~~~~~~~~~~~-------------~ 55 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFI------EKKFKDDSN----H-----------TIGVEFGSKIINV-------------G 55 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH------HSSCCTTCC----C-----------CSEEEEEEEEEEE-------------T
T ss_pred ceEEEEECCCCCCHHHHHHHHH------cCCCCCCCC----C-----------ccceEEEEEEEEE-------------C
Confidence 3679999999999999999998 322110000 0 0000000000000 0
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHH---HHHhccCCcCEEEeecCCCCC
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQA---QAFKQSVSVGAVIVTKMDGHA 254 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~---~~~~~~~~~~~lVinK~D~~~ 254 (344)
...+.+.++||||...... . . ......+|.+++|+|++..... .... ........+..+|+||+|+..
T Consensus 56 ~~~~~~~l~Dt~G~~~~~~-~---~--~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 129 (186)
T 2bme_A 56 GKYVKLQIWDTAGQERFRS-V---T--RSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDA 129 (186)
T ss_dssp TEEEEEEEEEECCSGGGHH-H---H--HTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred CEEEEEEEEeCCCcHHHHH-H---H--HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 0135778999999754221 1 1 1223468999999999865322 1122 222222345588899999853
Q ss_pred Ch----hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 255 KG----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 255 ~~----~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
.. ..........+. +.+.+|+++|+| ++++++.+.+.+
T Consensus 130 ~~~~~~~~~~~~~~~~~~------------------~~~~~Sa~~~~g-i~~l~~~l~~~~ 171 (186)
T 2bme_A 130 DREVTFLEASRFAQENEL------------------MFLETSALTGEN-VEEAFVQCARKI 171 (186)
T ss_dssp GCCSCHHHHHHHHHHTTC------------------EEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHcCC------------------EEEEecCCCCCC-HHHHHHHHHHHH
Confidence 21 112222222221 234467789999 999998887654
No 162
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.04 E-value=2.1e-10 Score=98.41 Aligned_cols=154 Identities=14% Similarity=0.053 Sum_probs=58.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...|+++|.+||||||+++.|. +.++...+. + ..+.............
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~------~~~~~~~~~--~---------~~t~~~~~~~~~~~~~--------------- 67 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFT------SKGSKFLKD--Y---------AMTSGVEVVVAPVTIP--------------- 67 (208)
T ss_dssp EEEEEEC---------------------------------------------------CEEEECT---------------
T ss_pred ceEEEEECCCCCCHHHHHHHHH------hCCCcccCC--C---------CCccceEEEEEEEEEC---------------
Confidence 3579999999999999999998 442222211 0 0000000000000000
Q ss_pred hC--CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHhc------cCCcCEEEeec
Q 019214 181 KE--NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ------SVSVGAVIVTK 249 (344)
Q Consensus 181 ~~--~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~~------~~~~~~lVinK 249 (344)
.. .+.+.++||||..... .+ .......+|.+++|+|++..... ......+.. ...+..+|+||
T Consensus 68 ~~~~~~~~~l~Dt~G~~~~~-----~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK 141 (208)
T 2yc2_C 68 DTTVSVELFLLDTAGSDLYK-----EQ-ISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANK 141 (208)
T ss_dssp TSSEEEEEEEEETTTTHHHH-----HH-HSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEEC
T ss_pred CcccEEEEEEEECCCcHHHH-----HH-HHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEEC
Confidence 01 3567899999984211 11 11223468999999999865322 222222222 23355889999
Q ss_pred CCCCC-Ch----hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHh-CCCChhHHHHHHHhhC
Q 019214 250 MDGHA-KG----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLL-GMGDWSGFMDKIHEVV 311 (344)
Q Consensus 250 ~D~~~-~~----~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~-g~g~i~~l~~~i~~~~ 311 (344)
+|... .. ..........+. +.+.+|+++ |+| +++++++|.+.+
T Consensus 142 ~Dl~~~~~~v~~~~~~~~~~~~~~------------------~~~~~Sa~~~~~g-i~~l~~~i~~~~ 190 (208)
T 2yc2_C 142 TDLPPQRHQVRLDMAQDWATTNTL------------------DFFDVSANPPGKD-ADAPFLSIATTF 190 (208)
T ss_dssp C-------CCCHHHHHHHHHHTTC------------------EEEECCC--------CHHHHHHHHHH
T ss_pred cccchhhccCCHHHHHHHHHHcCC------------------EEEEeccCCCCcC-HHHHHHHHHHHH
Confidence 99865 21 122233332222 234467778 899 999999887765
No 163
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.04 E-value=4.6e-10 Score=95.22 Aligned_cols=153 Identities=16% Similarity=0.137 Sum_probs=84.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...|+++|++||||||++++|. +.+.. .+ + ....+..+...... ..
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~------~~~~~---~~-~-----------~~t~~~~~~~~~~~-------------~~ 60 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFT------DDTFD---PE-L-----------AATIGVDFKVKTIS-------------VD 60 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------HSCCC---TT-C-----------CCCCSEEEEEEEEE-------------ET
T ss_pred ceEEEEECCCCCCHHHHHHHHH------cCCCC---cc-C-----------CCccceEEEEEEEE-------------EC
Confidence 3679999999999999999998 32211 00 0 00001111000000 00
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHhcc----CCcCEEEeecCCCC
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQS----VSVGAVIVTKMDGH 253 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~~~----~~~~~lVinK~D~~ 253 (344)
...+.+.|+||||........ ......+|.+++|+|++..... ......+... ..+..+|+||+|+.
T Consensus 61 ~~~~~~~i~Dt~G~~~~~~~~------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~ 134 (195)
T 1x3s_A 61 GNKAKLAIWDTAGQERFRTLT------PSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE 134 (195)
T ss_dssp TEEEEEEEEEECSSGGGCCSH------HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS
T ss_pred CeEEEEEEEeCCCchhhhhhh------HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc
Confidence 014678899999974321110 1113468999999999865322 2222333321 23457889999985
Q ss_pred CCh---hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 254 AKG---GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 254 ~~~---~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
... ..........+. +.+.+|+++|.| +++++++|.+.+.
T Consensus 135 ~~~~~~~~~~~~~~~~~~------------------~~~~~Sa~~~~g-i~~l~~~l~~~~~ 177 (195)
T 1x3s_A 135 NREVDRNEGLKFARKHSM------------------LFIEASAKTCDG-VQCAFEELVEKII 177 (195)
T ss_dssp SCCSCHHHHHHHHHHTTC------------------EEEECCTTTCTT-HHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHcCC------------------EEEEecCCCCCC-HHHHHHHHHHHHH
Confidence 421 122233332221 234467789999 9999999887653
No 164
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.03 E-value=2.6e-10 Score=97.93 Aligned_cols=152 Identities=13% Similarity=0.054 Sum_probs=84.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
+...|+++|.+||||||++++|. +.+.. ...++ +............
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~------~~~~~-~~~~~------------t~~~~~~~~~~~~--------------- 68 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFV------EGEFS-EGYDP------------TVENTYSKIVTLG--------------- 68 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHH------HSCCC-SCCCC------------CSEEEEEEEEC-----------------
T ss_pred CcEEEEEECCCCcCHHHHHHHHH------hCCCC-CCCCC------------ccceEEEEEEEEC---------------
Confidence 34679999999999999999998 43322 01000 0000000000000
Q ss_pred HhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHhcc----CCcCEEEeecCCC
Q 019214 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQS----VSVGAVIVTKMDG 252 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~~~----~~~~~lVinK~D~ 252 (344)
...+.+.|+||||...... + .......+|.+++|+|++..... ......+... ..+..+|+||+|+
T Consensus 69 -~~~~~~~l~Dt~G~~~~~~-----~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 141 (201)
T 3oes_A 69 -KDEFHLHLVDTAGQDEYSI-----L-PYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADL 141 (201)
T ss_dssp ---CEEEEEEEECCCCTTCC-----C-CGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTC
T ss_pred -CEEEEEEEEECCCccchHH-----H-HHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccC
Confidence 1256778999999653210 0 01123468999999999864322 2222233221 2345888999998
Q ss_pred CCCh----hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 253 HAKG----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 253 ~~~~----~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
.... ..........+. +.+.+|+++|.| ++++++.|.+.+
T Consensus 142 ~~~~~v~~~~~~~~~~~~~~------------------~~~~~Sa~~~~~-v~~l~~~l~~~i 185 (201)
T 3oes_A 142 SPEREVQAVEGKKLAESWGA------------------TFMESSARENQL-TQGIFTKVIQEI 185 (201)
T ss_dssp GGGCCSCHHHHHHHHHHHTC------------------EEEECCTTCHHH-HHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHhCC------------------eEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 5321 112222232332 234467778888 999988887765
No 165
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.03 E-value=7.7e-10 Score=97.86 Aligned_cols=121 Identities=22% Similarity=0.261 Sum_probs=65.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
....|+++|++||||||+++.|. |..+..... + ....+.........
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~------g~~~~~~~~-~---------~~~~t~~~~~~~~~----------------- 74 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSIL------GRKVFHSGT-A---------AKSITKKCEKRSSS----------------- 74 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHH------TSCCSCC-----------------CCSCEEEEEE-----------------
T ss_pred CceEEEEECCCCCCHHHHHHHHc------CCCcCccCC-C---------CCceeeeEEEEEEE-----------------
Confidence 34679999999999999999999 765521110 0 00111111100010
Q ss_pred HhCCCCEEEEcCCCCCcch---HHHHHHHHHhh--hhcCCcEEEEEEcCCcc-hhHHHHHHH----Hhc-cCCcCEEEee
Q 019214 180 KKENCDLIIVDTSGRHKQE---AALFEEMRQVS--EATNPDLVIFVMDSSIG-QAAFDQAQA----FKQ-SVSVGAVIVT 248 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~---~~~~~~l~~~~--~~~~~d~illvvda~~~-~~~~~~~~~----~~~-~~~~~~lVin 248 (344)
..+..+.|+||||..... ....+++.... ....+|.+++|+|++.. ......+.. +.. ...+..+|+|
T Consensus 75 -~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~n 153 (239)
T 3lxx_A 75 -WKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFT 153 (239)
T ss_dssp -ETTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEE
T ss_pred -eCCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEe
Confidence 115678999999986432 12223333222 12367999999998643 222222222 211 1235688999
Q ss_pred cCCCCC
Q 019214 249 KMDGHA 254 (344)
Q Consensus 249 K~D~~~ 254 (344)
|+|...
T Consensus 154 K~D~~~ 159 (239)
T 3lxx_A 154 RKDDLG 159 (239)
T ss_dssp CGGGC-
T ss_pred CCccCC
Confidence 999854
No 166
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.03 E-value=2.4e-10 Score=97.85 Aligned_cols=153 Identities=14% Similarity=0.030 Sum_probs=82.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
+...|+++|.+||||||+++.+. +... ... ...+............
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~------~~~~--~~~-----------~~~t~~~~~~~~~~~~--------------- 64 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYT------TNGY--PTE-----------YIPTAFDNFSAVVSVD--------------- 64 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHH------C---------------------CCSSEEEEEEEEET---------------
T ss_pred cceEEEEECCCCCCHHHHHHHHH------hCCC--CCC-----------CCCcccceeEEEEEEC---------------
Confidence 34679999999999999999998 4331 111 0001100000000000
Q ss_pred HhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH----HHHHHhcc--CCcCEEEeecCCCC
Q 019214 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQS--VSVGAVIVTKMDGH 253 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~----~~~~~~~~--~~~~~lVinK~D~~ 253 (344)
...+.+.++||||...... +. ......+|.+++|+|++....... ....+... ..+..+|.||+|+.
T Consensus 65 -~~~~~~~i~Dt~G~~~~~~-----~~-~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 137 (201)
T 2q3h_A 65 -GRPVRLQLCDTAGQDEFDK-----LR-PLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLR 137 (201)
T ss_dssp -TEEEEEEEEECCCSTTCSS-----SG-GGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGG
T ss_pred -CEEEEEEEEECCCCHHHHH-----Hh-HhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhh
Confidence 0134567999999753221 10 112346899999999986532221 22222221 23457889999986
Q ss_pred CChhh----------------HHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 254 AKGGG----------------ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 254 ~~~~~----------------~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
..... ........+ ..+.+.+|+++|+| ++++++.+.+.+
T Consensus 138 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----------------~~~~~~~Sa~~g~g-i~~l~~~l~~~~ 193 (201)
T 2q3h_A 138 EDVKVLIELDKCKEKPVPEEAAKLLAEEIK-----------------AASYIECSALTQKN-LKEVFDAAIVAG 193 (201)
T ss_dssp GCHHHHHHHHTTTCCCCCHHHHHHHHHHHT-----------------CSEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred hchhhhhhhcccccccCCHHHHHHHHHhcC-----------------CcEEEEEecCCCCC-HHHHHHHHHHHH
Confidence 53211 111111111 11335578889999 999999887654
No 167
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.03 E-value=7.6e-10 Score=95.37 Aligned_cols=152 Identities=14% Similarity=0.103 Sum_probs=82.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...|+++|.+||||||+++++.. .... .+ + ....+..+...... ..
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~------~~~~---~~-~-----------~~t~~~~~~~~~~~-------------~~ 71 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQ------GLFP---PG-Q-----------GATIGVDFMIKTVE-------------IN 71 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH------SSCC---TT-C-----------CCCCSEEEEEEEEE-------------ET
T ss_pred ceEEEEECcCCCCHHHHHHHHHh------CCCC---CC-C-----------CCccceeEEEEEEE-------------EC
Confidence 35799999999999999999983 2211 00 0 00011111000000 00
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHh---ccCCcCEEEeecCCCCC
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFK---QSVSVGAVIVTKMDGHA 254 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~---~~~~~~~lVinK~D~~~ 254 (344)
...+.+.++||||..... .+ .......+|.+++|+|++..... ......+. ....+..+|.||+|+..
T Consensus 72 ~~~~~l~l~Dt~G~~~~~-----~~-~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 145 (201)
T 2ew1_A 72 GEKVKLQIWDTAGQERFR-----SI-TQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAE 145 (201)
T ss_dssp TEEEEEEEEEECCSGGGH-----HH-HGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred CEEEEEEEEECCCcHHHH-----HH-HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 013567899999974321 11 11223468999999999865322 12222222 22234578899999853
Q ss_pred Ch----hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 255 KG----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 255 ~~----~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
.. ..........+. +.+.+|+++|.| ++++++.|.+.+
T Consensus 146 ~~~v~~~~~~~~~~~~~~------------------~~~~~Sa~~g~g-v~~l~~~l~~~i 187 (201)
T 2ew1_A 146 RREVSQQRAEEFSEAQDM------------------YYLETSAKESDN-VEKLFLDLACRL 187 (201)
T ss_dssp GCSSCHHHHHHHHHHHTC------------------CEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHcCC------------------EEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 21 111222222222 234467789999 999998887654
No 168
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.03 E-value=9.2e-10 Score=98.92 Aligned_cols=118 Identities=16% Similarity=0.194 Sum_probs=67.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...|+++|.+||||||+++.|. |.+...++. + +.++.........
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~------~~~~~~~~~--~---------~~~t~~~~~~~~~------------------ 80 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLI------GEQVVRVSP--F---------QAEGLRPVMVSRT------------------ 80 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHH------TSCCSCCCS--S---------CC-CCCCEEEEEE------------------
T ss_pred CcEEEEECCCCCCHHHHHHHHh------CCCCcccCC--C---------CCcceeeEEEEEE------------------
Confidence 4679999999999999999999 766543332 1 1111111111010
Q ss_pred hCCCCEEEEcCCCCCcc---hHHHHHHHHHhhhhcCCcEEEEEEcCCcc---hhHHHHHHHHhcc-----CCcCEEEeec
Q 019214 181 KENCDLIIVDTSGRHKQ---EAALFEEMRQVSEATNPDLVIFVMDSSIG---QAAFDQAQAFKQS-----VSVGAVIVTK 249 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~---~~~~~~~l~~~~~~~~~d~illvvda~~~---~~~~~~~~~~~~~-----~~~~~lVinK 249 (344)
..+..+.|+||||.... .....+.+........+|.+++|++.... .........+... ..+..+|+||
T Consensus 81 ~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK 160 (262)
T 3def_A 81 MGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTH 160 (262)
T ss_dssp ETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEEC
T ss_pred ECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeC
Confidence 12567899999997432 22333334333333357899999765432 1112223322221 1245788999
Q ss_pred CCCC
Q 019214 250 MDGH 253 (344)
Q Consensus 250 ~D~~ 253 (344)
+|..
T Consensus 161 ~Dl~ 164 (262)
T 3def_A 161 AQFS 164 (262)
T ss_dssp TTCC
T ss_pred cccC
Confidence 9985
No 169
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.03 E-value=2.5e-10 Score=106.21 Aligned_cols=155 Identities=19% Similarity=0.080 Sum_probs=84.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...|+|+|.+||||||+++.|. +.+.. ..-| + .+..+....
T Consensus 165 ~~kI~ivG~~~vGKSsLl~~l~------~~~~~--~~~p-------------T-~~~~~~~~~----------------- 205 (329)
T 3o47_A 165 EMRILMVGLDAAGKTTILYKLK------LGEIV--TTIP-------------T-IGFNVETVE----------------- 205 (329)
T ss_dssp SEEEEEEESTTSSHHHHHHHTC------SSCCE--EEEE-------------E-TTEEEEEEE-----------------
T ss_pred cceEEEECCCCccHHHHHHHHh------CCCCC--Cccc-------------c-cceEEEEEe-----------------
Confidence 3579999999999999999997 54431 1100 1 111111100
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHH-hc---cCCcCEEEeecCCCC
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAF-KQ---SVSVGAVIVTKMDGH 253 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~-~~---~~~~~~lVinK~D~~ 253 (344)
..++.+.|+||||...... +. ......+|.+++|+|++..... ......+ .. ...+..+|+||+|+.
T Consensus 206 ~~~~~l~i~Dt~G~~~~~~-----~~-~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~ 279 (329)
T 3o47_A 206 YKNISFTVWDVGGQDKIRP-----LW-RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 279 (329)
T ss_dssp ETTEEEEEEECC-----CC-----SH-HHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred cCcEEEEEEECCCCHhHHH-----HH-HHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCC
Confidence 1256789999999532210 10 1112357999999999754222 1222222 11 123457889999986
Q ss_pred CChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 254 ~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
.... ........+. .... ....+.+.+|+++|+| ++++++.|.+.+.
T Consensus 280 ~~~~-~~~i~~~~~~---------~~~~-~~~~~~~~vSAk~g~g-i~el~~~l~~~l~ 326 (329)
T 3o47_A 280 NAMN-AAEITDKLGL---------HSLR-HRNWYIQATCATSGDG-LYEGLDWLSNQLR 326 (329)
T ss_dssp TCCC-HHHHHHHHTC---------TTCC-SSCEEEEECBTTTTBT-HHHHHHHHHHHHT
T ss_pred cccC-HHHHHHHhch---------hhhh-cCCCEEEEEECCCCcC-HHHHHHHHHHHHH
Confidence 5321 1112222111 0000 0112345688999999 9999999987653
No 170
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.02 E-value=2.7e-10 Score=95.57 Aligned_cols=152 Identities=14% Similarity=0.029 Sum_probs=79.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...|+++|.+||||||+++++. +.+. .. .+.+ +...... ..... .
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~------~~~~--~~--~~~~---------t~~~~~~--~~~~~--------------~ 52 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYT------SNTF--PT--DYVP---------TVFDNFS--ANVVV--------------N 52 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH------HSCC--C---------------------CB--CCCC----------------
T ss_pred eEEEEEECCCCCCHHHHHHHHh------cCCC--CC--CCCC---------eeeeeEE--EEEEE--------------C
Confidence 3579999999999999999998 3221 00 0000 0000000 00000 0
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH----HHHHHhc--cCCcCEEEeecCCCCC
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQ--SVSVGAVIVTKMDGHA 254 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~----~~~~~~~--~~~~~~lVinK~D~~~ 254 (344)
...+.+.++||||...... + .......+|.+++|+|++....... ....+.. ...+..+|.||+|+..
T Consensus 53 ~~~~~~~i~Dt~G~~~~~~-----~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 126 (182)
T 3bwd_D 53 GATVNLGLWDTAGQEDYNR-----L-RPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRD 126 (182)
T ss_dssp -----CEEECCCC-CTTTT-----T-GGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHT
T ss_pred CEEEEEEEEECCCChhhhh-----h-HHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhc
Confidence 0145567999999753220 1 0112346899999999986532211 2222222 1234578899999855
Q ss_pred Chhh--------------HHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 255 KGGG--------------ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 255 ~~~~--------------~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
.... ........+ ..+.+.+|+++|+| ++++++.+.+.+
T Consensus 127 ~~~~~~~~~~~~~v~~~~~~~~~~~~~-----------------~~~~~~~Sa~~~~g-i~~l~~~l~~~i 179 (182)
T 3bwd_D 127 DKQFFIDHPGAVPITTVQGEELKKLIG-----------------APAYIECSSKSQEN-VKGVFDAAIRVV 179 (182)
T ss_dssp CHHHHHHC--CCCCCHHHHHHHHHHHT-----------------CSEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred CcccccccccCCCCCHHHHHHHHHHcC-----------------CCEEEEEECCCCCC-HHHHHHHHHHHH
Confidence 4221 111111111 11334578889999 999999987653
No 171
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.59 E-value=2.7e-11 Score=104.27 Aligned_cols=120 Identities=14% Similarity=0.066 Sum_probs=60.7
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH----HHHHHhcc--CCcCEEEeecCCCCCCh
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQS--VSVGAVIVTKMDGHAKG 256 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~----~~~~~~~~--~~~~~lVinK~D~~~~~ 256 (344)
.+.+.++||||..... .+. ......+|.+++|+|++....... ....+... ..+..+|.||+|+....
T Consensus 77 ~~~l~i~Dt~G~~~~~-----~~~-~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~ 150 (204)
T 3th5_A 77 PVNLGLWDTAGQEDYD-----RLR-PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 150 (204)
Confidence 4556699999974321 111 011235789999999876422211 12222211 23457889999986432
Q ss_pred hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhh
Q 019214 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (344)
Q Consensus 257 ~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~ 310 (344)
.. .+..............+.....-....+.+.+|+++|+| ++++++.|.+.
T Consensus 151 ~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~g-i~~l~~~l~~~ 202 (204)
T 3th5_A 151 DT-IEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG-LKTVFDEAIRA 202 (204)
Confidence 11 111110000000000111111111112557799999999 99999887654
No 172
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.02 E-value=1.6e-09 Score=93.00 Aligned_cols=153 Identities=16% Similarity=0.052 Sum_probs=83.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...|+++|.+||||||+++.+. +.+.. . .+ ..+ .+..+...... ..
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~------~~~~~---~-~~----------~~t-~~~~~~~~~~~-------------~~ 74 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFK------TGAFS---E-RQ----------GST-IGVDFTMKTLE-------------IQ 74 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHH------HSCC-------------------------CEEEEEEE-------------ET
T ss_pred ceEEEEECcCCCCHHHHHHHHh------hCCCC---C-CC----------CCC-cceEEEEEEEE-------------EC
Confidence 3679999999999999999998 33211 0 00 000 01111000000 00
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHhc---cCCcCEEEeecCCCCC
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ---SVSVGAVIVTKMDGHA 254 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~~---~~~~~~lVinK~D~~~ 254 (344)
...+.+.|+||||...... . . ......+|.+++|+|++..... ......+.. ...+..+|.||+|+..
T Consensus 75 ~~~~~l~i~Dt~G~~~~~~-~---~--~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 148 (201)
T 2hup_A 75 GKRVKLQIWDTAGQERFRT-I---T--QSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSE 148 (201)
T ss_dssp TEEEEEEEECCTTCGGGHH-H---H--HHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred CEEEEEEEEECCCcHhHHH-H---H--HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCcccc
Confidence 0135788999999754321 1 1 1123468999999999864322 122222222 2234578899999854
Q ss_pred C----hhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 255 K----GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 255 ~----~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
. ...........+. .+.+.+|+++|+| ++++++.|.+.+
T Consensus 149 ~~~v~~~~~~~~~~~~~~-----------------~~~~~~SA~~g~g-i~~l~~~l~~~i 191 (201)
T 2hup_A 149 LREVSLAEAQSLAEHYDI-----------------LCAIETSAKDSSN-VEEAFLRVATEL 191 (201)
T ss_dssp GCCSCHHHHHHHHHHTTC-----------------SEEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHcCC-----------------CEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 2 1122233332221 1334567889999 999999887754
No 173
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.02 E-value=1.8e-10 Score=114.10 Aligned_cols=67 Identities=16% Similarity=0.196 Sum_probs=41.9
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHHHHHHHhcc--CCcCEEEeecCCCCCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQS--VSVGAVIVTKMDGHAK 255 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~~~~~~~~~--~~~~~lVinK~D~~~~ 255 (344)
++.+.++||||...... ... .....+|.+++|+|++...........+... ..+..+|.||+|....
T Consensus 97 ~~~~~i~Dt~G~e~~~~-~~~-----~~l~~~d~ii~V~D~s~~~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~ 165 (535)
T 3dpu_A 97 ECLFHFWDFGGQEIMHA-SHQ-----FFMTRSSVYMLLLDSRTDSNKHYWLRHIEKYGGKSPVIVVMNKIDENPS 165 (535)
T ss_dssp TCEEEEECCCSCCTTTT-TCH-----HHHHSSEEEEEEECGGGGGGHHHHHHHHHHHSSSCCEEEEECCTTTCTT
T ss_pred eEEEEEEECCcHHHHHH-HHH-----HHccCCcEEEEEEeCCCchhHHHHHHHHHHhCCCCCEEEEEECCCcccc
Confidence 57889999999643221 100 0122589999999998765444444333322 2456889999998643
No 174
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.02 E-value=6.9e-11 Score=102.06 Aligned_cols=168 Identities=12% Similarity=0.049 Sum_probs=84.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...|+++|.+||||||+++.|. +.+..-. +.+ +............
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~------~~~~~~~----~~~---------t~~~~~~~~~~~~---------------- 69 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFS------KDEFPEV----YVP---------TVFENYVADIEVD---------------- 69 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHH------HSSCC--------------------CCEEEEEEEET----------------
T ss_pred CcEEEEECcCCCCHHHHHHHHh------cCCCCCc----CCC---------cccceEEEEEEEC----------------
Confidence 4679999999999999999998 3322100 000 0000000000000
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH----HHHHHhcc--CCcCEEEeecCCCCC
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQS--VSVGAVIVTKMDGHA 254 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~----~~~~~~~~--~~~~~lVinK~D~~~ 254 (344)
...+.+.++||||...... + .......+|.+++|+|++....... ....+... ..+..+|+||+|+..
T Consensus 70 ~~~~~~~i~Dt~G~~~~~~-----~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 143 (207)
T 2fv8_A 70 GKQVELALWDTAGQEDYDR-----L-RPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRS 143 (207)
T ss_dssp TEEEEEEEEECTTCTTCTT-----T-GGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGG
T ss_pred CEEEEEEEEECCCcHHHHH-----H-HHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhc
Confidence 0135778999999753221 1 0112346899999999886422111 22222221 234588999999865
Q ss_pred ChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 255 ~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
... ..+.+............+.....-....+.+.+|+++|+| ++++++.|.+.+
T Consensus 144 ~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~g-i~el~~~l~~~i 198 (207)
T 2fv8_A 144 DEH-VRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEG-VREVFETATRAA 198 (207)
T ss_dssp CHH-HHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred ccc-chhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCC-HHHHHHHHHHHH
Confidence 421 1111111100000000000000000011335578999999 999999987754
No 175
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.01 E-value=6e-11 Score=103.49 Aligned_cols=153 Identities=13% Similarity=0.020 Sum_probs=82.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
....|+++|.+||||||+++++.. |........ ....+.....+.. .
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~-----~~~~~~~~~-----------t~~~~~~~~~~~~--~--------------- 60 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLT-----GEFEKKYVA-----------TLGVEVHPLVFHT--N--------------- 60 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHH-----HHHTCEEET-----------TTTEEEEEEEEEE--T---------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHc-----CCCCCCCCC-----------ccceeEEEEEEEE--C---------------
Confidence 346799999999999999999542 211111111 1111111111100 0
Q ss_pred HhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHhcc--CCcCEEEeecCCCCC
Q 019214 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQS--VSVGAVIVTKMDGHA 254 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~~~--~~~~~lVinK~D~~~ 254 (344)
..++.+.++||||...... . . ......+|.+++|+|++..... ......+... ..+..+|.||+|+..
T Consensus 61 -~~~~~~~i~Dt~G~~~~~~-~---~--~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 133 (221)
T 3gj0_A 61 -RGPIKFNVWDTAGQEKFGG-L---R--DGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 133 (221)
T ss_dssp -TEEEEEEEEEECSGGGTSC-C---C--HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSS
T ss_pred -CEEEEEEEEeCCChHHHhH-H---H--HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCcccc
Confidence 1146778999999632110 0 0 0112368999999999865322 1222222221 234588899999864
Q ss_pred Chh--hHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 255 KGG--GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 255 ~~~--~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
... .........+ .+.+.+|+++|.| ++++++.|.+.+
T Consensus 134 ~~~~~~~~~~~~~~~------------------~~~~~~Sa~~~~g-i~~l~~~l~~~l 173 (221)
T 3gj0_A 134 RKVKAKSIVFHRKKN------------------LQYYDISAKSNYN-FEKPFLWLARKL 173 (221)
T ss_dssp CSSCGGGCCHHHHHT------------------CEEEECBGGGTBT-TTHHHHHHHHHH
T ss_pred ccccHHHHHHHHHcC------------------CEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 310 1111111111 1234568889999 999998887764
No 176
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.01 E-value=7e-10 Score=108.33 Aligned_cols=158 Identities=19% Similarity=0.170 Sum_probs=86.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcc-EEeecCcCcchhHHHHHhhcccC-CcceeccCCCCCHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKP-ALVCADTFRAGAFDQLKQNATKA-KIPFYGSYTESDPVRIAVEGVET 178 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v-~iv~~D~~~~~~~~~l~~~~~~~-~v~~~~~~~~~~~~~~~~~~l~~ 178 (344)
...|+++|.+|+|||||+++|. |... .+++ .... + -.+..+.. +...+
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~------~~~~~~~~d--~~~~---e-~~~GiTi~~~~~~~------------------ 68 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLT------EIASTSAHD--KLPE---S-QKRGITIDIGFSAF------------------ 68 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHH------TTC--------------------------CCCEE------------------
T ss_pred CCEEEEECCCCChHHHHHHHHH------CCCcccccc--cccc---c-ccCccEEecceEEE------------------
Confidence 4679999999999999999998 5431 1111 0000 0 00111110 00000
Q ss_pred HHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc--hhHHHHHHHHhccCCcCEEEeecCCCCCCh
Q 019214 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QAAFDQAQAFKQSVSVGAVIVTKMDGHAKG 256 (344)
Q Consensus 179 ~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~--~~~~~~~~~~~~~~~~~~lVinK~D~~~~~ 256 (344)
...++.+.|+||||.. .+...+. .....+|.+++|+|++.+ ....+.+........+..+|+||+|.....
T Consensus 69 -~~~~~~i~iiDtPGh~----~~~~~~~--~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~ 141 (482)
T 1wb1_A 69 -KLENYRITLVDAPGHA----DLIRAVV--SAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTE 141 (482)
T ss_dssp -EETTEEEEECCCSSHH----HHHHHHH--HHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHH
T ss_pred -EECCEEEEEEECCChH----HHHHHHH--HHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccch
Confidence 0125678999999963 2323332 223468999999999875 222222222222222348899999997532
Q ss_pred --hhHHH----HHHHh-CCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 257 --GGALS----AVAAT-KSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 257 --~~~~~----~~~~~-~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
....+ .+... + + ...+.+.+|+++|+| +++|++.|.+.+
T Consensus 142 ~~~~~~~~l~~~l~~~~~-----------~----~~~~ii~vSA~~g~g-I~~L~~~L~~~i 187 (482)
T 1wb1_A 142 EIKRTEMIMKSILQSTHN-----------L----KNSSIIPISAKTGFG-VDELKNLIITTL 187 (482)
T ss_dssp HHHHHHHHHHHHHHHSSS-----------G----GGCCEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhcc-----------c----ccceEEEEECcCCCC-HHHHHHHHHHhh
Confidence 11111 11111 1 0 123456678889999 999999998854
No 177
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.01 E-value=2.9e-10 Score=95.47 Aligned_cols=151 Identities=11% Similarity=0.021 Sum_probs=81.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...|+++|.+||||||+++++. +... .-..++ +............
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~------~~~~-~~~~~~------------t~~~~~~~~~~~~---------------- 50 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFV------EGQF-VDSYDP------------TIENTFTKLITVN---------------- 50 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH------HSSC-CSCCCT------------TCCEEEEEEEEET----------------
T ss_pred eEEEEEECcCCCCHHHHHHHHH------cCCC-CCCCCC------------CccccEEEEEEEC----------------
Confidence 4679999999999999999998 3221 001100 0000000000000
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH---HHHHH----hccCCcCEEEeecCCCC
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAF----KQSVSVGAVIVTKMDGH 253 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~---~~~~~----~~~~~~~~lVinK~D~~ 253 (344)
...+.+.++||||...... + .......+|.+++|+|.+....... ....+ .....+..+|.||+|+.
T Consensus 51 ~~~~~~~l~Dt~G~~~~~~-----~-~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 124 (181)
T 3t5g_A 51 GQEYHLQLVDTAGQDEYSI-----F-PQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 124 (181)
T ss_dssp TEEEEEEEEECCCCCTTCC-----C-CGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCT
T ss_pred CEEEEEEEEeCCCchhhhH-----H-HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 0135678999999753210 0 0111336899999999986422211 11122 11123557889999985
Q ss_pred CC----hhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 254 AK----GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 254 ~~----~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
.. ...........+. +.+.+|+++|+| ++++++.+.+.+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~------------------~~~~~Sa~~~~~-v~~l~~~l~~~~ 167 (181)
T 3t5g_A 125 MERVISYEEGKALAESWNA------------------AFLESSAKENQT-AVDVFRRIILEA 167 (181)
T ss_dssp TTCCSCHHHHHHHHHHTTC------------------EEEECCTTSHHH-HHHHHHHHHHHH
T ss_pred hcceecHHHHHHHHHHhCC------------------cEEEEecCCCCC-HHHHHHHHHHHH
Confidence 32 1222233333332 234467778888 999998887765
No 178
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.01 E-value=7.3e-10 Score=100.25 Aligned_cols=167 Identities=14% Similarity=0.103 Sum_probs=74.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
....|+++|.+||||||++|.|. +.++...+... ....+.+ + .++.........+
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~------~~~~~~~~~~~----~~~~~~~--t-~~~~~~~~~~~~~------------ 61 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLF------LTDLYSPEYPG----PSHRIKK--T-VQVEQSKVLIKEG------------ 61 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHS------SSCC----------------------CCCEEEEEEECC-------------
T ss_pred cEEEEEEECCCCCCHHHHHHHHh------CCCccccCCCC----cccccCC--c-eEEEEEEEEEecC------------
Confidence 34679999999999999999998 76665443210 0000011 0 1111111000000
Q ss_pred HhCCCCEEEEcCCCCCcc------hHHHHHH--------HHH---hhh----hcCCcEEEEEEcCCc-c--hhHHHHHHH
Q 019214 180 KKENCDLIIVDTSGRHKQ------EAALFEE--------MRQ---VSE----ATNPDLVIFVMDSSI-G--QAAFDQAQA 235 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~------~~~~~~~--------l~~---~~~----~~~~d~illvvda~~-~--~~~~~~~~~ 235 (344)
.....+.++||||.... ...+... +.. +.+ ...+|.++++++++. + ......+..
T Consensus 62 -~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~ 140 (274)
T 3t5d_A 62 -GVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKR 140 (274)
T ss_dssp --CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHH
T ss_pred -CeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHH
Confidence 01247889999998321 1111111 111 000 013567888887654 3 233344555
Q ss_pred HhccCCcCEEEeecCCCCCChhh------HHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHh
Q 019214 236 FKQSVSVGAVIVTKMDGHAKGGG------ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (344)
Q Consensus 236 ~~~~~~~~~lVinK~D~~~~~~~------~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~ 309 (344)
+.. ..+..+|+||+|....... ..+.+...++|+ +.+|+..|+| ++++.+.|.+
T Consensus 141 l~~-~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v------------------~~~sa~~~~~-~~~l~~~l~~ 200 (274)
T 3t5d_A 141 LHE-KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKI------------------YEFPETDDEE-ENKLVKKIKD 200 (274)
T ss_dssp HTT-TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCC------------------CCC------------CHHHHH
T ss_pred Hhc-cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeE------------------EcCCCCCChh-HHHHHHHHhc
Confidence 544 3455889999998654211 112222223222 2235567777 7777777777
Q ss_pred hCC
Q 019214 310 VVP 312 (344)
Q Consensus 310 ~~~ 312 (344)
.++
T Consensus 201 ~~p 203 (274)
T 3t5d_A 201 RLP 203 (274)
T ss_dssp TCS
T ss_pred CCC
Confidence 654
No 179
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.01 E-value=2.2e-10 Score=96.40 Aligned_cols=123 Identities=14% Similarity=0.053 Sum_probs=63.0
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH----HHHHHhcc--CCcCEEEeecCCCCCCh
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQS--VSVGAVIVTKMDGHAKG 256 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~----~~~~~~~~--~~~~~lVinK~D~~~~~ 256 (344)
.+.+.++||||..... .+ .......+|.+++|+|++....... ....+... ..+..+|.||+|+....
T Consensus 52 ~~~~~i~Dt~G~~~~~-----~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 125 (186)
T 1mh1_A 52 PVNLGLWDTAGQEDYD-----RL-RPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 125 (186)
T ss_dssp EEEEEEECCCCSGGGT-----TT-GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCH
T ss_pred EEEEEEEECCCCHhHH-----HH-HHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccc
Confidence 4566799999984321 01 0112346899999999986532211 22222221 23458899999986542
Q ss_pred hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCC
Q 019214 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (344)
Q Consensus 257 ~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~ 313 (344)
.. .+..............+.....-....+.+.+|+++|+| ++++++.+.+.+..
T Consensus 126 ~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~g-i~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 126 DT-IEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG-LKTVFDEAIRAVLC 180 (186)
T ss_dssp HH-HHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTT-HHHHHHHHHHHHSC
T ss_pred hh-hhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCCccC-HHHHHHHHHHHHhc
Confidence 11 111111000000000000000000112445678899999 99999998876643
No 180
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.01 E-value=8e-10 Score=93.93 Aligned_cols=152 Identities=15% Similarity=0.119 Sum_probs=82.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...|+++|.+||||||++++|...- ........ ...+.....+.. .
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~----~~~~~~~t------------~~~~~~~~~~~~--~---------------- 68 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDT----FTPAFVST------------VGIDFKVKTVYR--H---------------- 68 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHT----TCCCEEEE------------ETTTEEEEEEEE--T----------------
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCC----CCcccCCC------------eeeEEEEEEEEE--C----------------
Confidence 4679999999999999999998311 00110000 000000000000 0
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchh---HHHHHHHHhc---cCCcCEEEeecCCCCC
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQAQAFKQ---SVSVGAVIVTKMDGHA 254 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~---~~~~~~~~~~---~~~~~~lVinK~D~~~ 254 (344)
...+.+.|+||||..... .+. ......+|.+++|+|++.... .......+.. ...+..+|.||+|+..
T Consensus 69 ~~~~~~~i~Dt~G~~~~~-----~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 142 (191)
T 3dz8_A 69 EKRVKLQIWDTAGQERYR-----TIT-TAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE 142 (191)
T ss_dssp TTTEEEEEECHHHHHHCH-----HHH-HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred CEEEEEEEEeCCChHHHH-----HHH-HHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 115678899999953211 111 112346899999999986422 1222222222 2345578899999843
Q ss_pred C----hhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 255 K----GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 255 ~----~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
. ...........+. +.+.+|+++|+| ++++++.|.+.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~------------------~~~~~Sa~~~~g-i~~l~~~l~~~i 184 (191)
T 3dz8_A 143 ERVVPTEKGQLLAEQLGF------------------DFFEASAKENIS-VRQAFERLVDAI 184 (191)
T ss_dssp GCCSCHHHHHHHHHHHTC------------------EEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHcCC------------------eEEEEECCCCCC-HHHHHHHHHHHH
Confidence 2 1112222333332 234467778999 999998887654
No 181
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=99.01 E-value=3.1e-09 Score=106.43 Aligned_cols=41 Identities=29% Similarity=0.405 Sum_probs=37.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcC
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~ 140 (344)
..+++++.|++||||||++.+||..+++.|++|++||+|+.
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~~ 47 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPA 47 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 45678888999999999999999999999999999999983
No 182
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.00 E-value=6.8e-10 Score=93.38 Aligned_cols=149 Identities=12% Similarity=0.040 Sum_probs=64.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCccee---ccCCCCCHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFY---GSYTESDPVRIAVEGVE 177 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~---~~~~~~~~~~~~~~~l~ 177 (344)
...|+++|.+||||||+++++. +.+.. ... .+.. +..+. ....
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~------~~~~~-~~~-----------~~t~---~~~~~~~~~~~~------------- 53 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFS------EDAFN-STF-----------ISTI---GIDFKIRTIELD------------- 53 (183)
T ss_dssp EEEEEEECCCCC-----------------------CH-----------HHHH---CEEEEEEEEEET-------------
T ss_pred ceEEEEECCCCCCHHHHHHHHH------hCCCC-CCC-----------CCcc---cceeEEEEEEEC-------------
Confidence 3579999999999999999998 32211 000 1100 11100 0000
Q ss_pred HHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHH---HHHHHHhc---cCCcCEEEeecCC
Q 019214 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQ---SVSVGAVIVTKMD 251 (344)
Q Consensus 178 ~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~---~~~~~~~~---~~~~~~lVinK~D 251 (344)
...+.+.++||||..... .+ .......+|.+++|+|++...... .....+.. ...+..+|.||+|
T Consensus 54 ---~~~~~~~l~Dt~G~~~~~-----~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D 124 (183)
T 2fu5_C 54 ---GKRIKLQIWDTAGQERFR-----TI-TTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD 124 (183)
T ss_dssp ---TEEEEEEEEEC---------------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--
T ss_pred ---CEEEEEEEEcCCCChhhh-----hh-HHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcc
Confidence 013677899999974311 11 111234689999999998653221 12222222 1235578899999
Q ss_pred CCCC----hhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 252 GHAK----GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 252 ~~~~----~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
+... ...........+. +.+.+|+++|.| ++++++.|.+.+
T Consensus 125 l~~~~~v~~~~~~~~~~~~~~------------------~~~~~Sa~~~~~-i~~l~~~l~~~i 169 (183)
T 2fu5_C 125 VNDKRQVSKERGEKLALDYGI------------------KFMETSAKANIN-VENAFFTLARDI 169 (183)
T ss_dssp CCSCCCSCHHHHHHHHHHHTC------------------EEEECCC---CC-HHHHHHHHHHHH
T ss_pred CCccCcCCHHHHHHHHHHcCC------------------eEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 8642 1222233333332 233457778999 999999887765
No 183
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.00 E-value=9.8e-10 Score=94.06 Aligned_cols=153 Identities=13% Similarity=0.074 Sum_probs=83.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...|+++|.+||||||+++.++ |.+... .. .+..............
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~------~~~~~~-~~-----------~~~~~~~~~~~~~~~~---------------- 68 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFG------GLQGDS-AH-----------EPENPEDTYERRIMVD---------------- 68 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTC------CEECCG-GG-----------TTTSCTTEEEEEEEET----------------
T ss_pred EEEEEEECCCCCCHHHHHHHHH------hccCCc-cC-----------CCCcccceEEEEEEEC----------------
Confidence 3679999999999999999997 432111 01 0000000000000000
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchh---HHHHHHHHhc----cCCcCEEEeecCCCC
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQAQAFKQ----SVSVGAVIVTKMDGH 253 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~---~~~~~~~~~~----~~~~~~lVinK~D~~ 253 (344)
...+.+.++||||.......+ ... ....+|.+++|+|.+.... .......+.. ...+..+|.||+|+.
T Consensus 69 ~~~~~l~i~Dt~g~~~~~~~~----~~~-~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 143 (195)
T 3cbq_A 69 KEEVTLVVYDIWEQGDAGGWL----RDH-CLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 143 (195)
T ss_dssp TEEEEEEEECCCCCSGGGHHH----HHH-HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCT
T ss_pred CEEEEEEEEecCCCccchhhh----HHH-hhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhcc
Confidence 013566788999986432211 111 1224799999999975422 2222222221 123457889999986
Q ss_pred CCh----hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 254 AKG----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 254 ~~~----~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
... ..........+. +.+.+|+++|+| ++++++.+.+.+
T Consensus 144 ~~~~v~~~~~~~~a~~~~~------------------~~~e~Sa~~~~~-v~~lf~~l~~~i 186 (195)
T 3cbq_A 144 RSREVSLEEGRHLAGTLSC------------------KHIETSAALHHN-TRELFEGAVRQI 186 (195)
T ss_dssp TTCCSCHHHHHHHHHHTTC------------------EEEEEBTTTTBS-HHHHHHHHHHHH
T ss_pred ccCCcCHHHHHHHHHHhCC------------------EEEEEcCCCCCC-HHHHHHHHHHHH
Confidence 421 111222222121 234567788999 999999887755
No 184
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.00 E-value=1.9e-09 Score=92.46 Aligned_cols=152 Identities=14% Similarity=0.029 Sum_probs=80.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...|+++|.+||||||+++.|. +.+...... ...+......... ..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~------~~~~~~~~~-----------~t~~~~~~~~~~~-~~---------------- 70 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFI------ENKFKQDSN-----------HTIGVEFGSRVVN-VG---------------- 70 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH------C-----------------------CCEEEEEEE-ET----------------
T ss_pred ceEEEEECcCCCCHHHHHHHHH------hCCCCccCC-----------CcccceeEEEEEE-EC----------------
Confidence 4679999999999999999998 433221110 0000000000000 00
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHh---ccCCcCEEEeecCCCCC
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFK---QSVSVGAVIVTKMDGHA 254 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~---~~~~~~~lVinK~D~~~ 254 (344)
...+.+.|+||||..... .+ .......+|.+++|+|++..... ......+. ....+..+|+||+|+..
T Consensus 71 ~~~~~l~l~Dt~G~~~~~-----~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 144 (200)
T 2o52_A 71 GKTVKLQIWDTAGQERFR-----SV-TRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDP 144 (200)
T ss_dssp TEEEEEEEECCTTHHHHS-----CC-CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGG
T ss_pred CeeeEEEEEcCCCcHhHH-----HH-HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccc
Confidence 013578899999952100 00 01113368999999999865322 12222221 12234578899999853
Q ss_pred Ch----hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 255 KG----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 255 ~~----~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
.. ..........+. +.+.+|+++|.| ++++++.|.+.+
T Consensus 145 ~~~v~~~~~~~~~~~~~~------------------~~~~~SA~~g~g-i~~l~~~l~~~i 186 (200)
T 2o52_A 145 EREVTFLEASRFAQENEL------------------MFLETSALTGEN-VEEAFLKCARTI 186 (200)
T ss_dssp GCCSCHHHHHHHHHHTTC------------------EEEEECTTTCTT-HHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHcCC------------------EEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 21 122222222222 233467788999 999999887654
No 185
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.00 E-value=3.2e-10 Score=98.51 Aligned_cols=169 Identities=14% Similarity=0.059 Sum_probs=78.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
+...|+++|.+||||||+++.+. +.+..- ...+ +............
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~------~~~~~~-~~~~------------t~~~~~~~~~~~~--------------- 78 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFA------DGAFPE-SYTP------------TVFERYMVNLQVK--------------- 78 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHH------C--------CC------------CCCEEEEEEEEET---------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHH------cCCCCC-CCCC------------ccceeEEEEEEEC---------------
Confidence 34679999999999999999998 433210 0000 0000000000000
Q ss_pred HhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH----HHHHHhc--cCCcCEEEeecCCCC
Q 019214 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQ--SVSVGAVIVTKMDGH 253 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~----~~~~~~~--~~~~~~lVinK~D~~ 253 (344)
...+.+.++||||..... .+.. .....+|.+++|+|++....... ....+.. ...+..+|.||+|+.
T Consensus 79 -~~~~~l~l~Dt~G~~~~~-----~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 151 (214)
T 2j1l_A 79 -GKPVHLHIWDTAGQDDYD-----RLRP-LFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLR 151 (214)
T ss_dssp -TEEEEEEEEEC---------------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGG
T ss_pred -CEEEEEEEEECCCchhhh-----HHHH-HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhh
Confidence 013567899999964321 1111 11236789999999986532221 1222221 123457889999987
Q ss_pred CChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 254 ~~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
..... .+.....+........++.+..-....+.+.+|+++|.| ++++++.|.+.+
T Consensus 152 ~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~g-i~el~~~l~~~~ 207 (214)
T 2j1l_A 152 KDKSL-VNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDN-VHAVFQEAAEVA 207 (214)
T ss_dssp SCHHH-HHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred ccchh-hhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCC-HHHHHHHHHHHH
Confidence 54311 111111000000000000000000112345578889999 999999987754
No 186
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.00 E-value=5.2e-10 Score=96.63 Aligned_cols=154 Identities=14% Similarity=0.035 Sum_probs=85.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...|+++|.+||||||+++.+. +.+. .. .+.+ +............
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~------~~~~---~~-~~~~---------t~~~~~~~~~~~~---------------- 53 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYT------SNKF---PT-DYIP---------TVFDNFSANVAVD---------------- 53 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH------HSCC---CS-SCCC---------SSCCCEEEEEECS----------------
T ss_pred eEEEEEECCCCCCHHHHHHHHh------cCCC---Cc-cCCC---------ccceeEEEEEEEC----------------
Confidence 3679999999999999999998 3221 01 0100 0001110000001
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH----HHHHHhcc--CCcCEEEeecCCCCC
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQS--VSVGAVIVTKMDGHA 254 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~----~~~~~~~~--~~~~~lVinK~D~~~ 254 (344)
...+.+.++||||...... +. ......+|.+++|+|.+....... ....+... ..+..+|.||+|+..
T Consensus 54 ~~~~~~~i~Dt~G~~~~~~-----~~-~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 127 (212)
T 2j0v_A 54 GQIVNLGLWDTAGQEDYSR-----LR-PLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRD 127 (212)
T ss_dssp SCEEEEEEECCCCCCCCCC--------CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHT
T ss_pred CEEEEEEEEECCCcHHHHH-----HH-HhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhh
Confidence 0135778999999754221 11 112346899999999986532221 22222221 234588899999854
Q ss_pred Chh------------hHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCC
Q 019214 255 KGG------------GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (344)
Q Consensus 255 ~~~------------~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~ 313 (344)
... .........+. .+.+.+|+++|+| ++++++.+.+.+..
T Consensus 128 ~~~~~~~~~~~v~~~~~~~~~~~~~~-----------------~~~~~~Sa~~g~g-i~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 128 DKGYLADHTNVITSTQGEELRKQIGA-----------------AAYIECSSKTQQN-VKAVFDTAIKVVLQ 180 (212)
T ss_dssp CHHHHHTCSSCCCHHHHHHHHHHHTC-----------------SEEEECCTTTCTT-HHHHHHHHHHHHHC
T ss_pred CccccccccCCCCHHHHHHHHHHcCC-----------------ceEEEccCCCCCC-HHHHHHHHHHHHhh
Confidence 321 11122222221 1334578889999 99999998876643
No 187
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.00 E-value=1.8e-09 Score=90.73 Aligned_cols=152 Identities=14% Similarity=0.038 Sum_probs=80.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
+...|+++|.+||||||+++++. +.... -..++ +............
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~------~~~~~-~~~~~------------t~~~~~~~~~~~~--------------- 62 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFF------QKIFV-DDYDP------------TIEDSYLKHTEID--------------- 62 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHH------HSCCC-SCCCT------------TCCEEEEEEEEET---------------
T ss_pred CceEEEEECCCCCCHHHHHHHHH------hCCCC-CCCCC------------CccceeEEEEEeC---------------
Confidence 34679999999999999999998 22110 01100 0000000000000
Q ss_pred HhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHH----hccCCcCEEEeecCCC
Q 019214 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAF----KQSVSVGAVIVTKMDG 252 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~----~~~~~~~~lVinK~D~ 252 (344)
...+.+.++||||........ ... ...+|.+++|+|++..... ......+ .....+..+|.||+|+
T Consensus 63 -~~~~~l~i~Dt~G~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 135 (183)
T 3kkq_A 63 -NQWAILDVLDTAGQEEFSAMR----EQY--MRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDL 135 (183)
T ss_dssp -TEEEEEEEEECCSCGGGCSSH----HHH--HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTC
T ss_pred -CcEEEEEEEECCCchhhHHHH----HHH--HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCc
Confidence 013445679999974321110 111 2247999999999865221 1122222 1122345788999998
Q ss_pred CCC----hhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHH-hCCCChhHHHHHHHhhC
Q 019214 253 HAK----GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRL-LGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 253 ~~~----~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~-~g~g~i~~l~~~i~~~~ 311 (344)
... ...........+.|+. .+|++ +|+| ++++++.|.+.+
T Consensus 136 ~~~~~v~~~~~~~~~~~~~~~~~------------------~~Sa~~~~~~-v~~l~~~l~~~i 180 (183)
T 3kkq_A 136 MHLRKVTRDQGKEMATKYNIPYI------------------ETSAKDPPLN-VDKTFHDLVRVI 180 (183)
T ss_dssp STTCCSCHHHHHHHHHHHTCCEE------------------EEBCSSSCBS-HHHHHHHHHHHH
T ss_pred hhccCcCHHHHHHHHHHhCCeEE------------------EeccCCCCCC-HHHHHHHHHHHH
Confidence 542 1223334444444433 34556 7788 888888877643
No 188
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=99.00 E-value=2.6e-09 Score=99.90 Aligned_cols=41 Identities=27% Similarity=0.213 Sum_probs=37.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH--HcCCccEEeecCcC
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQ--KKGWKPALVCADTF 140 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~--~~g~~v~iv~~D~~ 140 (344)
..+++++.|++||||||++.+||..++ ..|++|++||+|+.
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~ 59 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPA 59 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 346788889999999999999999999 89999999999974
No 189
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.99 E-value=2.3e-09 Score=91.18 Aligned_cols=166 Identities=14% Similarity=0.060 Sum_probs=83.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...|+++|.+||||||+++++.. ... .. .+.+ +............
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~------~~~--~~--~~~~---------t~~~~~~~~~~~~---------------- 62 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAN------DAF--PE--EYVP---------TVFDHYAVSVTVG---------------- 62 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH------SSC--CC--SCCC---------SSCCCEEEEEESS----------------
T ss_pred eEEEEEECCCCCCHHHHHHHHhc------CCC--CC--CCCC---------cccceeEEEEEEC----------------
Confidence 35799999999999999999983 221 00 0000 0001110000001
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHH----HHHHHHhcc--CCcCEEEeecCCCCC
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF----DQAQAFKQS--VSVGAVIVTKMDGHA 254 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~----~~~~~~~~~--~~~~~lVinK~D~~~ 254 (344)
...+.+.++||||...... + .......+|.+++|+|++...... .....+... ..+..+|.||+|+..
T Consensus 63 ~~~~~~~i~D~~G~~~~~~-----~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (194)
T 2atx_A 63 GKQYLLGLYDTAGQEDYDR-----L-RPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRD 136 (194)
T ss_dssp SCEEEEEEECCCCSSSSTT-----T-GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTT
T ss_pred CEEEEEEEEECCCCcchhH-----H-HHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 0135678999999754321 1 011234689999999998653211 122222221 234588999999965
Q ss_pred ChhhHHHHHHHhCC-CeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhh
Q 019214 255 KGGGALSAVAATKS-PVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (344)
Q Consensus 255 ~~~~~~~~~~~~~~-pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~ 310 (344)
.... .+.+..... .+. ...+..+..-....+.+.+|+++|+| ++++++.|.+.
T Consensus 137 ~~~~-~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~Sa~~g~g-i~~l~~~l~~~ 190 (194)
T 2atx_A 137 DPKT-LARLNDMKEKPIC-VEQGQKLAKEIGACCYVECSALTQKG-LKTVFDEAIIA 190 (194)
T ss_dssp CHHH-HHHHTTTTCCCCC-HHHHHHHHHHHTCSCEEECCTTTCTT-HHHHHHHHHHH
T ss_pred cccc-hhhcccccCcccC-HHHHHHHHHHcCCcEEEEeeCCCCCC-HHHHHHHHHHH
Confidence 4211 111000000 000 00000000000011334578889999 99999988764
No 190
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.99 E-value=2.3e-09 Score=109.16 Aligned_cols=130 Identities=19% Similarity=0.120 Sum_probs=66.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHH--HhhcccCCcceeccCCCCCHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQL--KQNATKAKIPFYGSYTESDPVRIAVEGVE 177 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l--~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 177 (344)
+.+.|+++|.+|+|||||+++|........ +..-++.. .....+... .+..+........
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~-~~g~v~~~-~~~~D~~~~e~~~giTi~~~~~~~---------------- 70 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIH-KIGETHEG-ASQMDWMEQEQDRGITITSAATTA---------------- 70 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC---------------------------CCSEEEE----------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCcc-ccccccCC-ceecccchhhhhcCceEeeeeEEE----------------
Confidence 457899999999999999999985321110 00101110 000000000 0111111100000
Q ss_pred HHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchh--HHHHHHHHhccCCcCEEEeecCCCCCC
Q 019214 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAFKQSVSVGAVIVTKMDGHAK 255 (344)
Q Consensus 178 ~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~--~~~~~~~~~~~~~~~~lVinK~D~~~~ 255 (344)
...++.+.|+||||........... ...+|.+++|+|++.+.. .............+..+|+||+|....
T Consensus 71 --~~~~~~i~liDTPG~~df~~~~~~~------l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 71 --AWEGHRVNIIDTPGHVDFTVEVERS------LRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp --EETTEEEEEECCCCCSSCCHHHHHH------HHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred --EECCeeEEEEECcCCcchHHHHHHH------HHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCcccc
Confidence 0126788999999986543332211 223899999999987632 222222233223345888999998654
No 191
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.98 E-value=6.1e-10 Score=95.59 Aligned_cols=167 Identities=12% Similarity=0.039 Sum_probs=83.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...|+++|.+||||||+++.+. +.+.. . .+.+ +............
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~------~~~~~---~-~~~~---------t~~~~~~~~~~~~---------------- 69 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFS------KDQFP---E-VYVP---------TVFENYIADIEVD---------------- 69 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH------HSSCC---S-SCCC---------SSCCCCEEEEEET----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHH------hCcCC---c-ccCC---------cccceEEEEEEEC----------------
Confidence 3579999999999999999998 33221 0 0000 0000000000000
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH----HHHHHhcc--CCcCEEEeecCCCCC
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQS--VSVGAVIVTKMDGHA 254 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~----~~~~~~~~--~~~~~lVinK~D~~~ 254 (344)
...+.+.++||||..... .+. ......+|.+++|+|++....... ....+... ..+..+|+||+|+..
T Consensus 70 ~~~~~l~i~Dt~G~~~~~-----~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 143 (201)
T 2gco_A 70 GKQVELALWDTAGQEDYD-----RLR-PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQ 143 (201)
T ss_dssp TEEEEEEEECCCCSGGGT-----TTG-GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTT
T ss_pred CEEEEEEEEECCCchhHH-----HHH-HHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhc
Confidence 013567899999964321 010 112346899999999886422211 12222221 234578899999876
Q ss_pred ChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhh
Q 019214 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (344)
Q Consensus 255 ~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~ 310 (344)
.... ...+............+.....-....+.+.+|+++|+| ++++++.|.+.
T Consensus 144 ~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~g-i~~l~~~i~~~ 197 (201)
T 2gco_A 144 DEHT-RRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEG-VREVFEMATRA 197 (201)
T ss_dssp CHHH-HHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTT-HHHHHHHHHHH
T ss_pred Cccc-hhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCC-HHHHHHHHHHH
Confidence 4221 111111000000000000000000111345578899999 99999988764
No 192
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.98 E-value=7.8e-10 Score=94.16 Aligned_cols=152 Identities=14% Similarity=0.127 Sum_probs=84.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...|+++|.+||||||+++.+. +.+. ... +.+ +............
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~------~~~~--~~~--~~~---------t~~~~~~~~~~~~---------------- 67 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFS------KGEI--PTA--YVP---------TVFENFSHVMKYK---------------- 67 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------HSCC--CSS--CCC---------CSEEEEEEEEEET----------------
T ss_pred eeEEEEECcCCCCHHHHHHHHh------cCCC--CCc--cCC---------eeeeeeEEEEEEC----------------
Confidence 4679999999999999999998 3321 000 000 0000000000000
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH----HHHHHhcc--CCcCEEEeecCCCCC
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQS--VSVGAVIVTKMDGHA 254 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~----~~~~~~~~--~~~~~lVinK~D~~~ 254 (344)
...+.+.++||||..... .+ .......+|.+++|+|++....... ....+... ..+..+|.||+|+..
T Consensus 68 ~~~~~~~i~Dt~G~~~~~-----~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 141 (194)
T 3reg_A 68 NEEFILHLWDTAGQEEYD-----RL-RPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRK 141 (194)
T ss_dssp TEEEEEEEEEECCSGGGT-----TT-GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCC
T ss_pred CEEEEEEEEECCCcHHHH-----HH-hHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 014556899999964321 01 1112346899999999986533222 12222211 235588899999853
Q ss_pred C------hhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 255 K------GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 255 ~------~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
. ...........+.+ +.+.+|+++|+| ++++++.+.+.+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~Sa~~~~g-i~~l~~~l~~~i 186 (194)
T 3reg_A 142 DGSDDVTKQEGDDLCQKLGCV-----------------AYIEASSVAKIG-LNEVFEKSVDCI 186 (194)
T ss_dssp TTTTCCCHHHHHHHHHHHTCS-----------------CEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred CCCCcccHHHHHHHHHhcCCC-----------------EEEEeecCCCCC-HHHHHHHHHHHH
Confidence 2 11222223322221 134467889999 999999987755
No 193
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.97 E-value=1.8e-09 Score=91.46 Aligned_cols=154 Identities=14% Similarity=0.066 Sum_probs=79.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
+...|+++|.+||||||++++|. +.+..-... + ..+..+...... .
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~------~~~~~~~~~-~--------------t~~~~~~~~~~~-------------~ 64 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFC------AGRFPDRTE-A--------------TIGVDFRERAVD-------------I 64 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHH------HSSCCSSCC-C--------------CCSCCEEEEEEE-------------E
T ss_pred ceEEEEEECCCCCCHHHHHHHHH------cCCCCCCCC-C--------------CcceEEEEEEEE-------------E
Confidence 34679999999999999999998 322210000 0 001110000000 0
Q ss_pred HhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchh---HHHHHHHHh----ccCCcCEEEeecCCC
Q 019214 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQAQAFK----QSVSVGAVIVTKMDG 252 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~---~~~~~~~~~----~~~~~~~lVinK~D~ 252 (344)
....+.+.|+||||..... ..+. ......+|.+++|+|++.... .......+. ....+..+|+||+|.
T Consensus 65 ~~~~~~~~l~Dt~G~~~~~----~~~~-~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 139 (189)
T 1z06_A 65 DGERIKIQLWDTAGQERFR----KSMV-QHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 139 (189)
T ss_dssp TTEEEEEEEEECCCSHHHH----TTTH-HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTC
T ss_pred CCEEEEEEEEECCCchhhh----hhhh-HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 0013578899999963211 0110 111346899999999986422 112222221 122345788999998
Q ss_pred CCC----hhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhC---CCChhHHHHHHHhhC
Q 019214 253 HAK----GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLG---MGDWSGFMDKIHEVV 311 (344)
Q Consensus 253 ~~~----~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g---~g~i~~l~~~i~~~~ 311 (344)
... ...........+.| .+.+|++.| +| ++++++.|.+.+
T Consensus 140 ~~~~~v~~~~~~~~~~~~~~~------------------~~~~Sa~~~~~~~~-i~~l~~~l~~~i 186 (189)
T 1z06_A 140 RSAIQVPTDLAQKFADTHSMP------------------LFETSAKNPNDNDH-VEAIFMTLAHKL 186 (189)
T ss_dssp GGGCCSCHHHHHHHHHHTTCC------------------EEECCSSSGGGGSC-HHHHHHHHC---
T ss_pred cccceeCHHHHHHHHHHcCCE------------------EEEEeCCcCCcccC-HHHHHHHHHHHH
Confidence 532 11122222323322 233566677 78 888888876654
No 194
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.97 E-value=1.5e-09 Score=94.14 Aligned_cols=104 Identities=13% Similarity=0.097 Sum_probs=60.1
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHHHHHH---Hhc----cCCcCEEEeecCCCCCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQA---FKQ----SVSVGAVIVTKMDGHAK 255 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~~~~~---~~~----~~~~~~lVinK~D~~~~ 255 (344)
.+.+.|+||||... + ..+ .......+|.+++|+|++........... +.. ...+..+|+||+|+...
T Consensus 83 ~~~l~l~Dt~G~~~----~-~~~-~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~ 156 (217)
T 2f7s_A 83 KVHLQLWDTAGQER----F-RSL-TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQ 156 (217)
T ss_dssp EEEEEEEEEESHHH----H-HHH-HHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGG
T ss_pred eEEEEEEECCCcHh----H-HhH-HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccc
Confidence 45678999999532 1 111 11223468999999999865433222222 221 12345788999998542
Q ss_pred ----hhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 256 ----GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 256 ----~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
...........+.| .+.+|+++|+| +++++++|.+.+
T Consensus 157 ~~v~~~~~~~~~~~~~~~------------------~~~~Sa~~g~g-i~~l~~~l~~~i 197 (217)
T 2f7s_A 157 REVNERQARELADKYGIP------------------YFETSAATGQN-VEKAVETLLDLI 197 (217)
T ss_dssp CCSCHHHHHHHHHHTTCC------------------EEEEBTTTTBT-HHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHCCCc------------------EEEEECCCCCC-HHHHHHHHHHHH
Confidence 11222233323322 23456778899 999998887754
No 195
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.97 E-value=3.8e-10 Score=94.48 Aligned_cols=146 Identities=14% Similarity=0.096 Sum_probs=80.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...|+++|.+||||||+++.+. +.+..- ..| ..+ ..+.. .+ . ..
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~------~~~~~~--~~~-t~~-----~~~~~--~~---~-~~---------------- 50 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFL------TGSYQV--LEK-TES-----EQYKK--EM---L-VD---------------- 50 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHH------HSCCCC--CSS-CSS-----SEEEE--EE---E-ET----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHH------hCCCCC--cCC-Ccc-----eeEEE--EE---E-EC----------------
Confidence 3679999999999999999998 332210 100 000 00000 00 0 00
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH------HHHHHhc---cCCcCEEEeecCC
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD------QAQAFKQ---SVSVGAVIVTKMD 251 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~------~~~~~~~---~~~~~~lVinK~D 251 (344)
...+.+.++||||.... .. ...+|.+++|+|.+....... ....+.. ...+..+|.||+|
T Consensus 51 ~~~~~l~i~Dt~G~~~~--~~---------~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~D 119 (178)
T 2iwr_A 51 GQTHLVLIREEAGAPDA--KF---------SGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDR 119 (178)
T ss_dssp TEEEEEEEEECSSSCCH--HH---------HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTT
T ss_pred CEEEEEEEEECCCCchh--HH---------HHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 01356788999998641 11 124799999999986532211 1222222 1235578899999
Q ss_pred CCC---C---hhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 252 GHA---K---GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 252 ~~~---~---~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
+.. + ...........+ ..+.+.+|+++|+| ++++++.+.+.+
T Consensus 120 l~~~~~~~v~~~~~~~~~~~~~-----------------~~~~~~~Sa~~~~~-i~~lf~~l~~~~ 167 (178)
T 2iwr_A 120 ISASSPRVVGDARARALXADMK-----------------RCSYYETXATYGLN-VDRVFQEVAQKV 167 (178)
T ss_dssp CBTTBCCCSCHHHHHHHHHHHS-----------------SEEEEEEBTTTTBT-HHHHHHHHHHHH
T ss_pred ccccccCcCCHHHHHHHHHhhc-----------------CCeEEEEeccccCC-HHHHHHHHHHHH
Confidence 831 1 111122222110 11234467788999 999999887654
No 196
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.96 E-value=8.6e-10 Score=95.03 Aligned_cols=163 Identities=18% Similarity=0.124 Sum_probs=81.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCc-cEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWK-PALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~-v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 178 (344)
+...++++|++||||||+++.|+ |.. +..+.. ..+.+.. ...+. .
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~------g~~~~~~~~~-----------~~G~~~~-~~~~~-~--------------- 70 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLT------NQKSLARTSK-----------TPGRTQL-INLFE-V--------------- 70 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTC------CC------------------------CC-EEEEE-E---------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHh------CCCccccccC-----------CCcccee-eEEEE-e---------------
Confidence 44789999999999999999998 654 222222 1111110 00000 0
Q ss_pred HHhCCCCEEEEcCCCCCcch------HHHHHHHHHhhh-hcCCcEEEEEEcCCcchhHH--HHHHHHhccCCcCEEEeec
Q 019214 179 FKKENCDLIIVDTSGRHKQE------AALFEEMRQVSE-ATNPDLVIFVMDSSIGQAAF--DQAQAFKQSVSVGAVIVTK 249 (344)
Q Consensus 179 ~~~~~~d~vlIDT~G~~~~~------~~~~~~l~~~~~-~~~~d~illvvda~~~~~~~--~~~~~~~~~~~~~~lVinK 249 (344)
+..+.++||||..... ..+...+..... ....+.++++.|++.+.... ...........+..+|.||
T Consensus 71 ----~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK 146 (210)
T 1pui_A 71 ----ADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTK 146 (210)
T ss_dssp ----ETTEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred ----cCCEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEec
Confidence 1146789999985321 111111111211 13467889999987652221 2222222222233567999
Q ss_pred CCCCCChhhH--HHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCC
Q 019214 250 MDGHAKGGGA--LSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (344)
Q Consensus 250 ~D~~~~~~~~--~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~ 313 (344)
+|........ ...+... +.+........++|++.+.| ++++++.|.+....
T Consensus 147 ~D~~s~~~~~~~~~~~~~~------------~~~~~~~~~~~~~Sal~~~~-~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 147 ADKLASGARKAQLNMVREA------------VLAFNGDVQVETFSSLKKQG-VDKLRQKLDTWFSE 199 (210)
T ss_dssp GGGSCHHHHHHHHHHHHHH------------HGGGCSCEEEEECBTTTTBS-HHHHHHHHHHHHC-
T ss_pred ccCCCchhHHHHHHHHHHH------------HHhcCCCCceEEEeecCCCC-HHHHHHHHHHHHhh
Confidence 9986543211 1111110 00000111233467788999 99999999887643
No 197
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.96 E-value=2.5e-09 Score=93.34 Aligned_cols=153 Identities=13% Similarity=0.082 Sum_probs=81.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...|+++|++||||||+++.|. +.+...... + ..+..+....... .
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~------~~~~~~~~~------------~---t~~~~~~~~~~~~-------------~ 58 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFT------KNEFNMDSK------------S---TIGVEFATRTLEI-------------E 58 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHH------HCCCCC---------------------CCSEEEEEEEE-------------T
T ss_pred eeEEEEECcCCCCHHHHHHHHh------cCCCCCCCC------------C---cccceeEEEEEEE-------------C
Confidence 3579999999999999999998 433221111 0 0011110000000 0
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH---HHHHHhc---cCCcCEEEeecCCCCC
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ---SVSVGAVIVTKMDGHA 254 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~---~~~~~~~---~~~~~~lVinK~D~~~ 254 (344)
...+.+.|+||||...... + .......+|.+++|+|++....... ....+.. ...+..+|+||+|+..
T Consensus 59 ~~~~~~~i~Dt~G~~~~~~-----~-~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 132 (223)
T 3cpj_B 59 GKRIKAQIWDTAGQERYRA-----I-TSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAH 132 (223)
T ss_dssp TEEEEEEEECCTTTTTTTC-----C-CGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGG
T ss_pred CEEEEEEEEECCCccchhh-----h-HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 0135778999999643210 0 0112346899999999986532221 2222221 1234578899999854
Q ss_pred C----hhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 255 K----GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 255 ~----~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
. ...........+. +.+.+|+++|+| +++++++|.+.+.
T Consensus 133 ~~~v~~~~~~~~~~~~~~------------------~~~~~Sa~~~~g-i~~l~~~l~~~i~ 175 (223)
T 3cpj_B 133 LRAVPTEESKTFAQENQL------------------LFTETSALNSEN-VDKAFEELINTIY 175 (223)
T ss_dssp GCCSCHHHHHHHHHHTTC------------------EEEECCCC-CCC-HHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHcCC------------------EEEEEeCCCCCC-HHHHHHHHHHHHH
Confidence 2 1122222222222 223457778999 9999998877654
No 198
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.96 E-value=7.8e-10 Score=93.74 Aligned_cols=147 Identities=14% Similarity=0.033 Sum_probs=82.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
+...|+++|.+||||||+++++.. .... ....+. . ..+. ..+. ..
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~------~~~~-~~~~~t-~------~~~~----~~~~--~~--------------- 63 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLT------GTYV-QEESPE-G------GRFK----KEIV--VD--------------- 63 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH------SSCC-CCCCTT-C------EEEE----EEEE--ET---------------
T ss_pred CeeEEEEECCCCCCHHHHHHHHhc------CCCC-CCcCCC-c------ceEE----EEEE--EC---------------
Confidence 446799999999999999999983 2211 000000 0 0000 0000 00
Q ss_pred HhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHhcc----CCcCEEEeecCCC
Q 019214 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQS----VSVGAVIVTKMDG 252 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~~~----~~~~~lVinK~D~ 252 (344)
...+.+.++||||..... ....+|.+++|+|.+..... ......+... ..+..+|.||+|+
T Consensus 64 -~~~~~l~i~Dt~G~~~~~-----------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 131 (184)
T 3ihw_A 64 -GQSYLLLIRDEGGPPELQ-----------FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAI 131 (184)
T ss_dssp -TEEEEEEEEECSSSCCHH-----------HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTC
T ss_pred -CEEEEEEEEECCCChhhh-----------eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 013566789999986432 12247999999999865322 2223333221 2345788999998
Q ss_pred CC---C---hhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 253 HA---K---GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 253 ~~---~---~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
.. . ...........+ ..+.+.+|+++|+| ++++++.+.+.+
T Consensus 132 ~~~~~~~v~~~~~~~~~~~~~-----------------~~~~~e~Sa~~~~g-v~~lf~~l~~~i 178 (184)
T 3ihw_A 132 SAANPRVIDDSRARKLSTDLK-----------------RCTYYETCATYGLN-VERVFQDVAQKV 178 (184)
T ss_dssp BTTBCCCSCHHHHHHHHHHTT-----------------TCEEEEEBTTTTBT-HHHHHHHHHHHH
T ss_pred ccccccccCHHHHHHHHHHcC-----------------CCeEEEecCCCCCC-HHHHHHHHHHHH
Confidence 41 1 111222222211 11234567889999 999999887653
No 199
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.96 E-value=1.6e-09 Score=108.19 Aligned_cols=118 Identities=14% Similarity=0.160 Sum_probs=65.7
Q ss_pred CCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc--hhHHHHHHHHhccCCcCEEEeecCCCCCChh----
Q 019214 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QAAFDQAQAFKQSVSVGAVIVTKMDGHAKGG---- 257 (344)
Q Consensus 184 ~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~--~~~~~~~~~~~~~~~~~~lVinK~D~~~~~~---- 257 (344)
+.+.|+||||...... +. ......+|.+++|+|++.+ ....+..........+..+++||+|......
T Consensus 70 ~~i~liDTPGhe~F~~-----~~-~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~ 143 (594)
T 1g7s_A 70 PGLFFIDTPGHEAFTT-----LR-KRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEG 143 (594)
T ss_dssp CEEEEECCCTTSCCTT-----SB-CSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTT
T ss_pred CCEEEEECCCcHHHHH-----HH-HHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccC
Confidence 3588999999854321 00 0112358999999999985 2233333333333335588899999863210
Q ss_pred -----------------------hHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 258 -----------------------GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 258 -----------------------~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
.....+...++..... ..+.+.....+.+++|+++|+| +++|++.|...+
T Consensus 144 ~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~---~~l~~~~~~vpvv~vSA~tG~G-I~eLl~~I~~~~ 216 (594)
T 1g7s_A 144 RPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERF---DRVTDFASQVSIIPISAITGEG-IPELLTMLMGLA 216 (594)
T ss_dssp CCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEG---GGCSCTTTEEEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHH---HHHHhccCcceEEEEeccCCCC-chhHHHHHHhhc
Confidence 0111122222211000 0011111223567789999999 999999988654
No 200
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.95 E-value=8.4e-10 Score=104.18 Aligned_cols=147 Identities=16% Similarity=0.181 Sum_probs=83.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
+.|+++|.+|+|||||+++|. ..| ++.|. .+.. .. .
T Consensus 22 ~~i~iiG~~d~GKSTL~~~L~----~~g-----iTi~~------------------~~~~-~~----------------~ 57 (370)
T 2elf_A 22 ANVAIIGTEKSGRTSLAANLG----KKG-----TSSDI------------------TMYN-ND----------------K 57 (370)
T ss_dssp EEEEEEESTTSSHHHHHHTTS----EEE-----EESSS------------------EEEE-EC----------------S
T ss_pred CEEEEECCCCCCHHHHHHHHH----hCC-----EEEEe------------------eEEE-Ee----------------c
Confidence 479999999999999999997 111 11110 0000 00 1
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchh--HHHHHHHHhc-cCCcCEEEee-cCCCCCChh
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAFKQ-SVSVGAVIVT-KMDGHAKGG 257 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~--~~~~~~~~~~-~~~~~~lVin-K~D~~~~~~ 257 (344)
.++.+.|+||||......... .....+|.+++|+| ..+.. ..+....... ..+...+++| |+|. ....
T Consensus 58 ~~~~i~iiDtPGh~~f~~~~~------~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~ 129 (370)
T 2elf_A 58 EGRNMVFVDAHSYPKTLKSLI------TALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHA 129 (370)
T ss_dssp SSSEEEEEECTTTTTCHHHHH------HHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHH
T ss_pred CCeEEEEEECCChHHHHHHHH------HHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHH
Confidence 256789999999865432221 12346899999999 66522 2222222222 1232267889 9998 4311
Q ss_pred --hHHHHHHHhCCCeEEEecCCCCCcCcCCChHHH--HHHHh---CCCChhHHHHHHHhhCC
Q 019214 258 --GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPF--VSRLL---GMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 258 --~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~--is~~~---g~g~i~~l~~~i~~~~~ 312 (344)
...+.+...- ... . ....+.+. +|+++ |+| +++|++.|.+.++
T Consensus 130 ~~~~~~~i~~~l---------~~~-~-~~~~~ii~~~~SA~~~~~g~g-i~~L~~~l~~~~~ 179 (370)
T 2elf_A 130 IDELKAKLKVIT---------SGT-V-LQDWECISLNTNKSAKNPFEG-VDELKARINEVAE 179 (370)
T ss_dssp HHHHHHHHHHHT---------TTS-T-TTTCEEEECCCCTTSSSTTTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---------Hhc-C-CCceEEEecccccccCcCCCC-HHHHHHHHHhhcc
Confidence 1112222110 000 0 01124455 77888 999 9999999888754
No 201
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.95 E-value=5.8e-09 Score=99.67 Aligned_cols=127 Identities=17% Similarity=0.096 Sum_probs=70.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEe---ecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALV---CADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGV 176 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv---~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l 176 (344)
....|+++|.+|+||||++++|.......|+..... ..|.. .+......+........ .
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~----~~e~~~GiTi~~~~~~~--~------------ 71 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKA----PEERARGITINTAHVEY--E------------ 71 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCS----HHHHHHTCCCSCEEEEE--E------------
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCC----HHHHHcCCCEEeeeeEe--c------------
Confidence 346799999999999999999998776665310000 01110 00011111111111000 0
Q ss_pred HHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch--hHHHHHHHHhccCCc-CEEEeecCCCC
Q 019214 177 ETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQSVSV-GAVIVTKMDGH 253 (344)
Q Consensus 177 ~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~--~~~~~~~~~~~~~~~-~~lVinK~D~~ 253 (344)
..++.+.|+||||..... ..+ ......+|.+++|+|++.+. ...+..........+ ..+|+||+|..
T Consensus 72 ----~~~~~~~iiDtpG~~~f~----~~~--~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~ 141 (405)
T 2c78_A 72 ----TAKRHYSHVDCPGHADYI----KNM--ITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMV 141 (405)
T ss_dssp ----CSSCEEEEEECCCSGGGH----HHH--HHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGC
T ss_pred ----cCCeEEEEEECCChHHHH----HHH--HHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECcccc
Confidence 125788999999986432 122 12234689999999998762 222222222222122 36789999987
Q ss_pred C
Q 019214 254 A 254 (344)
Q Consensus 254 ~ 254 (344)
.
T Consensus 142 ~ 142 (405)
T 2c78_A 142 D 142 (405)
T ss_dssp C
T ss_pred C
Confidence 4
No 202
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.95 E-value=2.6e-09 Score=106.41 Aligned_cols=109 Identities=15% Similarity=0.137 Sum_probs=67.1
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH--HHHHHHHhccCCcCEEEeecCCCCCC-hhhH
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFKQSVSVGAVIVTKMDGHAK-GGGA 259 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~--~~~~~~~~~~~~~~~lVinK~D~~~~-~~~~ 259 (344)
++.+.|+||||....... +... ...+|.+++|+|++.+... ............+..+|+||+|.... ....
T Consensus 72 ~~~inliDTPGh~dF~~e----v~r~--l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~~~v 145 (600)
T 2ywe_A 72 TYKLHLIDTPGHVDFSYE----VSRA--LAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRV 145 (600)
T ss_dssp EEEEEEECCCCSGGGHHH----HHHH--HHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHH
T ss_pred eEEEEEEECCCcHhHHHH----HHHH--HHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccCHHHH
Confidence 366789999998654322 2111 2357999999999887322 22222222222345788999998653 2222
Q ss_pred HHHHHH-hCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCC
Q 019214 260 LSAVAA-TKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (344)
Q Consensus 260 ~~~~~~-~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~ 313 (344)
...+.. .+. ...+.+++|+++|.| ++.|++.|.+.++.
T Consensus 146 ~~el~~~lg~---------------~~~~vi~vSAktg~G-I~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 146 KKQIEEVLGL---------------DPEEAILASAKEGIG-IEEILEAIVNRIPP 184 (600)
T ss_dssp HHHHHHTSCC---------------CGGGCEECBTTTTBS-HHHHHHHHHHHSCC
T ss_pred HHHHHHhhCC---------------CcccEEEEEeecCCC-chHHHHHHHHhccc
Confidence 333321 111 112356789999999 99999999988864
No 203
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.95 E-value=2.7e-09 Score=106.42 Aligned_cols=109 Identities=13% Similarity=0.127 Sum_probs=66.7
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch--hHHHHHHHHhccCCcCEEEeecCCCCCCh-hhH
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQSVSVGAVIVTKMDGHAKG-GGA 259 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~--~~~~~~~~~~~~~~~~~lVinK~D~~~~~-~~~ 259 (344)
++.+.|+||||....... +... ...+|.+++|+|++.+. ..............+..+|+||+|..... ...
T Consensus 70 ~~~l~liDTPGh~dF~~e----v~~~--l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~~v 143 (599)
T 3cb4_D 70 TYQLNFIDTPGHVDFSYE----VSRS--LAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERV 143 (599)
T ss_dssp EEEEEEEECCCCGGGHHH----HHHH--HHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHH
T ss_pred eEEEEEEECCCchHHHHH----HHHH--HHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccHHHH
Confidence 467789999998654322 2111 22479999999998762 22222222222223458889999986532 222
Q ss_pred HHHHH-HhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCC
Q 019214 260 LSAVA-ATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (344)
Q Consensus 260 ~~~~~-~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~ 313 (344)
...+. ..+.+ ..+.+.+|+++|.| ++.|++.|.+.++.
T Consensus 144 ~~ei~~~lg~~---------------~~~vi~vSAktg~G-I~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 144 AEEIEDIVGID---------------ATDAVRCSAKTGVG-VQDVLERLVRDIPP 182 (599)
T ss_dssp HHHHHHHTCCC---------------CTTCEEECTTTCTT-HHHHHHHHHHHSCC
T ss_pred HHHHHHHhCCC---------------cceEEEeecccCCC-chhHHHHHhhcCCC
Confidence 33332 22211 12346688999999 99999999998864
No 204
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.94 E-value=4.9e-09 Score=91.14 Aligned_cols=151 Identities=13% Similarity=0.053 Sum_probs=81.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceec---cCCCCCHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYG---SYTESDPVRIAVEGVE 177 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~---~~~~~~~~~~~~~~l~ 177 (344)
...|+++|.+||||||+++.+. |.+..+++. .+. .+..++. ...+
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~------~~~~~~~~~-----------~~~---~g~d~~~~~i~~~~------------ 84 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFA------GVHDSMDSD-----------CEV---LGEDTYERTLMVDG------------ 84 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH------CCCCTTCCC-----------------CCTTEEEEEEEETT------------
T ss_pred ceEEEEECCCCCCHHHHHHHHH------hCCCCCCCc-----------CCc---cceeeEEEEEEECC------------
Confidence 3679999999999999999998 644322221 000 0111000 0000
Q ss_pred HHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHhc----cCCcCEEEeecC
Q 019214 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ----SVSVGAVIVTKM 250 (344)
Q Consensus 178 ~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~~----~~~~~~lVinK~ 250 (344)
..+.++++||+|.... ...+.. .....+|.+++|.|.+..... ......+.. ...+..+|.||+
T Consensus 85 ----~~~~l~~~Dt~g~~~~----~~~l~~-~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~ 155 (211)
T 2g3y_A 85 ----ESATIILLDMWENKGE----NEWLHD-HCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 155 (211)
T ss_dssp ----EEEEEEEECCTTTTHH----HHHHHH-CCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECT
T ss_pred ----eeeEEEEeecCCCcch----hhhHHH-HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEECh
Confidence 1345688999997531 111221 112357889999998754221 112222221 123457889999
Q ss_pred CCCCCh----hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 251 DGHAKG----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 251 D~~~~~----~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
|+.... ..........+ .+.+.+|+++|+| ++++++.+.+.+
T Consensus 156 DL~~~r~v~~~e~~~~a~~~~------------------~~~~e~SAk~g~~-v~elf~~l~~~i 201 (211)
T 2g3y_A 156 DLVRCREVSVSEGRACAVVFD------------------CKFIETSAAVQHN-VKELFEGIVRQV 201 (211)
T ss_dssp TCGGGCCSCHHHHHHHHHHHT------------------CEEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred HHhcCceEeHHHHHHHHHHcC------------------CEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 985321 11111111111 1234468889999 999999887654
No 205
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.94 E-value=2.4e-09 Score=102.49 Aligned_cols=112 Identities=14% Similarity=0.132 Sum_probs=59.2
Q ss_pred CCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch---hHHHHHHHHhc-cCCcCEEEeecCCCCCChh--
Q 019214 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ---AAFDQAQAFKQ-SVSVGAVIVTKMDGHAKGG-- 257 (344)
Q Consensus 184 ~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~---~~~~~~~~~~~-~~~~~~lVinK~D~~~~~~-- 257 (344)
+.+.|+||||.. .+...+ ......+|.+++|+|++.+. ...+.+..+.. ...+..+|+||+|......
T Consensus 81 ~~i~iiDtPGh~----~f~~~~--~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~ 154 (408)
T 1s0u_A 81 RRVSFVDSPGHE----TLMATM--LSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAE 154 (408)
T ss_dssp EEEEEEECSSHH----HHHHHH--HTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTT
T ss_pred cEEEEEECCCHH----HHHHHH--HHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHH
Confidence 568899999963 222222 22234689999999998642 22232222221 1234578899999865321
Q ss_pred hHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCC
Q 019214 258 GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (344)
Q Consensus 258 ~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~ 313 (344)
...+.+...- ... .....+.+.+|+++|+| ++.|++.|.+.++.
T Consensus 155 ~~~~~i~~~l---------~~~--~~~~~~~i~vSA~~g~g-i~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 155 ENYEQIKEFV---------KGT--IAENAPIIPISAHHEAN-IDVLLKAIQDFIPT 198 (408)
T ss_dssp THHHHHHHHH---------TTS--TTTTCCEEEC------C-HHHHHHHHHHHSCC
T ss_pred HHHHHHHHHH---------hhc--CCCCCeEEEeeCCCCCC-HHHHHHHHHHhCCC
Confidence 1222221100 000 01123456789999999 99999999987653
No 206
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.93 E-value=5.4e-10 Score=109.06 Aligned_cols=159 Identities=21% Similarity=0.198 Sum_probs=86.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
++.+|+++|.+|+|||||+++|...-...+.... .+.. +..+...
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~G------------------IT~~-i~~~~v~---------------- 47 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGG------------------ITQH-IGAYHVE---------------- 47 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCC------------------CCCC-SSCCCCC----------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCC------------------eeEe-EEEEEEE----------------
Confidence 4568999999999999999999743211111100 0000 0000000
Q ss_pred HhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc--hhHHHHHHHHhccCCcCEEEeecCCCCCCh-
Q 019214 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QAAFDQAQAFKQSVSVGAVIVTKMDGHAKG- 256 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~--~~~~~~~~~~~~~~~~~~lVinK~D~~~~~- 256 (344)
..+..+.|+||||....... + ......+|.+++|+|++.+ ....+..........+..+++||+|.....
T Consensus 48 -~~~~~i~~iDTPGhe~f~~~----~--~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~ 120 (501)
T 1zo1_I 48 -TENGMITFLDTPGHAAFTSM----R--ARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADP 120 (501)
T ss_dssp -TTSSCCCEECCCTTTCCTTS----B--CSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCC
T ss_pred -ECCEEEEEEECCCcHHHHHH----H--HHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCH
Confidence 12456789999997543210 0 1123468999999999865 222232332222223457889999985421
Q ss_pred hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhh
Q 019214 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (344)
Q Consensus 257 ~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~ 310 (344)
......+.. .+.....+....+.+.+|+++|.| +++|++.|...
T Consensus 121 ~~v~~~l~~---------~~~~~~~~~~~~~~v~vSAktG~g-I~eLle~I~~~ 164 (501)
T 1zo1_I 121 DRVKNELSQ---------YGILPEEWGGESQFVHVSAKAGTG-IDELLDAILLQ 164 (501)
T ss_dssp CCTTCCCCC---------CCCCTTCCSSSCEEEECCTTTCTT-CTTHHHHTTTT
T ss_pred HHHHHHHHH---------hhhhHHHhCCCccEEEEeeeeccC-cchhhhhhhhh
Confidence 000000000 000001111123567789999999 99999998753
No 207
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.92 E-value=4e-09 Score=100.51 Aligned_cols=127 Identities=16% Similarity=0.134 Sum_probs=68.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
..|+++|.+|+|||||+++|.......|..... . + ...+... .....++.+..... .+..
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~-~---~--~~~d~~~-~e~~~giTi~~~~~-------------~~~~ 63 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFK-K---Y--EEIDNAP-EERARGITINAAHV-------------EYST 63 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCC-C---H--HHHHSCC-EEEETTEEEECEEE-------------EEEC
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhhhcCccccc-h---h--hhhhcCH-HHHhcCcEEEeeeE-------------Eecc
Confidence 569999999999999999999776655532100 0 0 0000000 00011221110000 0001
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch--hHHHHHHHHhccCCc-CEEEeecCCCCC
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQSVSV-GAVIVTKMDGHA 254 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~--~~~~~~~~~~~~~~~-~~lVinK~D~~~ 254 (344)
.++.+.|+||||... +...+ ......+|.+++|+|++.+. ...+..........+ ..+++||+|...
T Consensus 64 ~~~~~~iiDtpG~~~----f~~~~--~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~ 133 (397)
T 1d2e_A 64 AARHYAHTDCPGHAD----YVKNM--ITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQ 133 (397)
T ss_dssp SSCEEEEEECSSHHH----HHHHH--HHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCS
T ss_pred CCeEEEEEECCChHH----HHHHH--HhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCC
Confidence 257889999999742 22222 22244689999999998762 222222222222122 357899999875
No 208
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.92 E-value=7.3e-11 Score=101.19 Aligned_cols=153 Identities=14% Similarity=0.014 Sum_probs=78.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccC-CcceeccCCCCCHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKA-KIPFYGSYTESDPVRIAVEGVET 178 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~-~v~~~~~~~~~~~~~~~~~~l~~ 178 (344)
....|+++|.+||||||++++|. +.+..... .+..+.. ....+. ..
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~------~~~~~~~~------------~~~~~~~~~~~~~~-~~-------------- 78 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFA------DDTYTESY------------ISTIGVDFKIRTIE-LD-------------- 78 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSB------CCCCCCHH------------HHHHCCSEEEEEEE-ET--------------
T ss_pred cceEEEEECCCCCCHHHHHHHHh------cCCCCCCc------------CCcccceEEEEEEE-EC--------------
Confidence 34679999999999999999987 43321100 0111100 000000 00
Q ss_pred HHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHH---HHHHHHhcc---CCcCEEEeecCCC
Q 019214 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQS---VSVGAVIVTKMDG 252 (344)
Q Consensus 179 ~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~---~~~~~~~~~---~~~~~lVinK~D~ 252 (344)
...+.+.|+||||....... .......+|.+++|+|++...... .....+... ..+..+|.||+|+
T Consensus 79 --~~~~~~~i~Dt~G~~~~~~~------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl 150 (199)
T 3l0i_B 79 --GKTIKLQIWDTAGQERFRTI------TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 150 (199)
T ss_dssp --TEEEEEEEECCTTCTTCCCC------SCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSC
T ss_pred --CEEEEEEEEECCCcHhHHHH------HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccC
Confidence 01356789999996432100 011134689999999998753322 222223221 2345788999998
Q ss_pred CCCh----hhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 253 HAKG----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 253 ~~~~----~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
.... ..........+ .+.+.+|+++|+| ++++++.|.+.+.
T Consensus 151 ~~~~~v~~~~~~~~~~~~~------------------~~~~~vSA~~g~g-v~~l~~~l~~~l~ 195 (199)
T 3l0i_B 151 TTKKVVDYTTAKEFADSLG------------------IPFLETSAKNATN-VEQSFMTMAAEIK 195 (199)
T ss_dssp C--CCCCSCC-CHHHHTTT------------------CCBCCCCC---HH-HHHHHHHHTTTTT
T ss_pred CccccCCHHHHHHHHHHcC------------------CeEEEEECCCCCC-HHHHHHHHHHHHH
Confidence 5321 01111111111 1334578889999 9999999987764
No 209
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.91 E-value=1.7e-08 Score=98.60 Aligned_cols=66 Identities=17% Similarity=0.266 Sum_probs=40.3
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch---------hHHHHHHHHhc-cCCcCEEEeecCCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ---------AAFDQAQAFKQ-SVSVGAVIVTKMDG 252 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~---------~~~~~~~~~~~-~~~~~~lVinK~D~ 252 (344)
++.+.|+||||...... .+ ......+|.+++|+|++.+. ...+....... ..++.++|+||+|+
T Consensus 110 ~~~~~iiDTPG~~~f~~----~~--~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl 183 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVP----NA--IMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDN 183 (483)
T ss_dssp SCEEEEECCCCCGGGHH----HH--HHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGG
T ss_pred CceEEEEECCCcHHHHH----HH--HHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCc
Confidence 67889999999854321 22 22234689999999998751 11222222211 22345788999998
Q ss_pred CC
Q 019214 253 HA 254 (344)
Q Consensus 253 ~~ 254 (344)
..
T Consensus 184 ~~ 185 (483)
T 3p26_A 184 VD 185 (483)
T ss_dssp GT
T ss_pred cc
Confidence 75
No 210
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.91 E-value=1.5e-09 Score=103.92 Aligned_cols=112 Identities=16% Similarity=0.139 Sum_probs=64.7
Q ss_pred CCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch---hHHHHHHHHhc-cCCcCEEEeecCCCCCChh--
Q 019214 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ---AAFDQAQAFKQ-SVSVGAVIVTKMDGHAKGG-- 257 (344)
Q Consensus 184 ~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~---~~~~~~~~~~~-~~~~~~lVinK~D~~~~~~-- 257 (344)
..+.|+||||.. .+...+ +.....+|.+++|+|++.+. ...+.+..+.. ..++..+|+||+|......
T Consensus 83 ~~i~iiDtPGh~----~f~~~~--~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~ 156 (410)
T 1kk1_A 83 RRVSFIDAPGHE----ALMTTM--LAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKAL 156 (410)
T ss_dssp EEEEEEECSSHH----HHHHHH--HHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHH
T ss_pred cEEEEEECCChH----HHHHHH--HhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHHH
Confidence 567899999963 232232 12233679999999998642 22222222221 1234467899999876421
Q ss_pred hHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCC
Q 019214 258 GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (344)
Q Consensus 258 ~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~ 313 (344)
...+.+...- +.. .....+.+.+|+++|+| ++.|++.|.+.++.
T Consensus 157 ~~~~~i~~~l---------~~~--~~~~~~~i~vSA~~g~g-i~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 157 ENYRQIKEFI---------EGT--VAENAPIIPISALHGAN-IDVLVKAIEDFIPT 200 (410)
T ss_dssp HHHHHHHHHH---------TTS--TTTTCCEEECBTTTTBS-HHHHHHHHHHHSCC
T ss_pred HHHHHHHHHH---------Hhc--CcCCCeEEEeeCCCCCC-HHHHHHHHHHhCCC
Confidence 1122221100 000 01123456678999999 99999999987653
No 211
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.90 E-value=1.6e-09 Score=91.94 Aligned_cols=150 Identities=10% Similarity=0.013 Sum_probs=80.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
+...|+++|.+||||||+++++. +.+.. . .+.+ +............
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~------~~~~~--~--~~~~---------t~~~~~~~~~~~~--------------- 65 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFL------TKRFI--S--EYDP---------NLEDTYSSEETVD--------------- 65 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHH------HSSCC--S--CCCT---------TCCEEEEEEEEET---------------
T ss_pred ceEEEEEECCCCCcHHHHHHHHH------hCCCC--c--ccCC---------CccceeeEEEEEC---------------
Confidence 34679999999999999999998 33211 1 0100 0000000000000
Q ss_pred HhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHH---HHHHHHhc------cCCcCEEEeecC
Q 019214 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQ------SVSVGAVIVTKM 250 (344)
Q Consensus 180 ~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~---~~~~~~~~------~~~~~~lVinK~ 250 (344)
...+.+.|+||||...... +.. ....+|.+++|+|.+...... .....+.. ...+..+|.||+
T Consensus 66 -~~~~~l~i~Dt~G~~~~~~-----~~~--~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~ 137 (187)
T 3c5c_A 66 -HQPVHLRVMDTADLDTPRN-----CER--YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKL 137 (187)
T ss_dssp -TEEEEEEEEECCC---CCC-----THH--HHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECG
T ss_pred -CEEEEEEEEECCCCCcchh-----HHH--HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECc
Confidence 0145678999999743221 111 133589999999998642221 12222211 223458889999
Q ss_pred CCCCC----hhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHH-HhCCCChhHHHHHHHhh
Q 019214 251 DGHAK----GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSR-LLGMGDWSGFMDKIHEV 310 (344)
Q Consensus 251 D~~~~----~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~-~~g~g~i~~l~~~i~~~ 310 (344)
|+... ...........+.| .+.+|+ .+|+| ++++++.|.+.
T Consensus 138 Dl~~~~~v~~~~~~~~~~~~~~~------------------~~e~Sa~~~g~g-v~~lf~~l~~~ 183 (187)
T 3c5c_A 138 DMAQYRQVTKAEGVALAGRFGCL------------------FFEVSACLDFEH-VQHVFHEAVRE 183 (187)
T ss_dssp GGGGGCSSCHHHHHHHHHHHTCE------------------EEECCSSSCSHH-HHHHHHHHHHH
T ss_pred chhhcCccCHHHHHHHHHHcCCc------------------EEEEeecCcccc-HHHHHHHHHHH
Confidence 98532 11222333333322 234566 68888 99888887664
No 212
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.88 E-value=9.5e-09 Score=104.56 Aligned_cols=67 Identities=21% Similarity=0.154 Sum_probs=41.9
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchh--HHHHHHHHhccCCcCEEEeecCCCCCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAFKQSVSVGAVIVTKMDGHAK 255 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~--~~~~~~~~~~~~~~~~lVinK~D~~~~ 255 (344)
++.+.|+||||........... ...+|.+++|+|++.+.. .............+..+|+||+|....
T Consensus 76 ~~~i~liDTPG~~df~~~~~~~------l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 76 DHRINIIDTPGHVDFTIEVERS------MRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGA 144 (691)
T ss_dssp TEEEEEECCCSSTTCHHHHHHH------HHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred CeEEEEEECcCccchHHHHHHH------HHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccC
Confidence 6788999999986533222111 224799999999987632 222222222223345788999998653
No 213
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.88 E-value=4.3e-09 Score=104.28 Aligned_cols=69 Identities=20% Similarity=0.215 Sum_probs=40.9
Q ss_pred CEEEEcCCCCCcchHH-------HHHHHHHhhhhcCCcEEEEEEcCCcc---hhHHHHHHHHhccCCcCEEEeecCCCCC
Q 019214 185 DLIIVDTSGRHKQEAA-------LFEEMRQVSEATNPDLVIFVMDSSIG---QAAFDQAQAFKQSVSVGAVIVTKMDGHA 254 (344)
Q Consensus 185 d~vlIDT~G~~~~~~~-------~~~~l~~~~~~~~~d~illvvda~~~---~~~~~~~~~~~~~~~~~~lVinK~D~~~ 254 (344)
.++||||||+...... +....... ...+|.+++|+|++.. .........+.....+..+|+||+|...
T Consensus 155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~--l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWF--AERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVE 232 (550)
T ss_dssp HCEEEECCCBCC-------CCSCHHHHHHHH--HHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGSC
T ss_pred CEEEEECcCCCCcchhHHHHHhhHHHHHHHH--HHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCccC
Confidence 5799999998752211 11111111 2357999999999762 2333344444433344688999999875
Q ss_pred C
Q 019214 255 K 255 (344)
Q Consensus 255 ~ 255 (344)
.
T Consensus 233 ~ 233 (550)
T 2qpt_A 233 T 233 (550)
T ss_dssp H
T ss_pred H
Confidence 3
No 214
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.87 E-value=3.3e-08 Score=86.16 Aligned_cols=105 Identities=13% Similarity=0.049 Sum_probs=61.5
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHH---HHHhccCCcCEEEeecCCCCCC-
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQA---QAFKQSVSVGAVIVTKMDGHAK- 255 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~---~~~~~~~~~~~lVinK~D~~~~- 255 (344)
.+.+.|.||||...... +.. .....++.+++|.|.+..... .... ........+.++|.||+|+...
T Consensus 61 ~v~l~iwDtaGqe~~~~-----l~~-~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r 134 (216)
T 4dkx_A 61 TIRLQLWDTAGLERFRS-----LIP-SYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR 134 (216)
T ss_dssp EEEEEEECCSCTTTCGG-----GHH-HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGC
T ss_pred EEEEEEEECCCchhhhh-----HHH-HHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcC
Confidence 45667999999754321 111 113468999999998764222 1122 2222222345788999998542
Q ss_pred ---hhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCC
Q 019214 256 ---GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (344)
Q Consensus 256 ---~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~ 312 (344)
...........+.+ .+.+|+++|+| ++++++.|.+.+.
T Consensus 135 ~V~~~e~~~~a~~~~~~------------------~~e~SAktg~n-V~e~F~~i~~~i~ 175 (216)
T 4dkx_A 135 QVSIEEGERKAKELNVM------------------FIETSAKAGYN-VKQLFRRVAAALP 175 (216)
T ss_dssp CSCHHHHHHHHHHHTCE------------------EEEEBTTTTBS-HHHHHHHHHHHC-
T ss_pred cccHHHHhhHHHHhCCe------------------eEEEeCCCCcC-HHHHHHHHHHHHH
Confidence 12222333333321 23368889999 9999999888764
No 215
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.85 E-value=5.8e-11 Score=118.74 Aligned_cols=66 Identities=24% Similarity=0.279 Sum_probs=31.2
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc---------hhHHHHHHHHhc-cCCcCEEEeecCCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG---------QAAFDQAQAFKQ-SVSVGAVIVTKMDG 252 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~---------~~~~~~~~~~~~-~~~~~~lVinK~D~ 252 (344)
++.+.|+||||+...... + ......+|.+++|+|++.+ ....+....... ..+..++|+||+|+
T Consensus 254 ~~~i~iiDTPGh~~f~~~----~--~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl 327 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISG----M--IAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDL 327 (592)
T ss_dssp -----CCEEESSSEEEEE----C--CC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGG
T ss_pred CeEEEEEECCChHHHHHH----H--HHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEecccc
Confidence 577899999998532111 0 1122357999999999753 122222222222 22324678999998
Q ss_pred CC
Q 019214 253 HA 254 (344)
Q Consensus 253 ~~ 254 (344)
..
T Consensus 328 ~~ 329 (592)
T 3mca_A 328 MS 329 (592)
T ss_dssp GT
T ss_pred cc
Confidence 65
No 216
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.85 E-value=8.9e-09 Score=97.99 Aligned_cols=20 Identities=30% Similarity=0.270 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 019214 103 VIMFVGLQGSGKTTTCTKYA 122 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La 122 (344)
.|+++|.|||||||++|+|.
T Consensus 2 kI~ivG~pnvGKSTL~n~L~ 21 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAAT 21 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999999
No 217
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.84 E-value=2.5e-08 Score=96.10 Aligned_cols=66 Identities=24% Similarity=0.314 Sum_probs=40.8
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch--hHHHHHHHHhc-cCCcCEEEeecCCCCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQ-SVSVGAVIVTKMDGHA 254 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~--~~~~~~~~~~~-~~~~~~lVinK~D~~~ 254 (344)
+..+.|+||||....... +. .....+|.+++|+|++.+. ...+....... ..++..+|+||+|+..
T Consensus 103 ~~~~~iiDtpGh~~f~~~----~~--~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~ 171 (434)
T 1zun_B 103 KRKFIIADTPGHEQYTRN----MA--TGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNG 171 (434)
T ss_dssp SEEEEEEECCCSGGGHHH----HH--HHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTT
T ss_pred CceEEEEECCChHHHHHH----HH--HHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCc
Confidence 567899999997643222 21 1234689999999998762 22222222211 2233577899999975
No 218
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.84 E-value=1.2e-08 Score=95.95 Aligned_cols=92 Identities=17% Similarity=0.256 Sum_probs=51.6
Q ss_pred CCCEEEEcCCCCCcc-----hHHHHHHHHHhh--hhcCCcEEEEEEcCCcc----hhHHHHHHHHhccCCcCEEEeecCC
Q 019214 183 NCDLIIVDTSGRHKQ-----EAALFEEMRQVS--EATNPDLVIFVMDSSIG----QAAFDQAQAFKQSVSVGAVIVTKMD 251 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~-----~~~~~~~l~~~~--~~~~~d~illvvda~~~----~~~~~~~~~~~~~~~~~~lVinK~D 251 (344)
..++.|+||||+... .......+..+. ....+|.+++|++++.. .+....+..+.....+..+|+||+|
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~D 214 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKID 214 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCc
Confidence 467899999997543 111222222221 23478989999986532 2334445555443345688999999
Q ss_pred CCCChhhHHHHHH----HhCCCeEEEe
Q 019214 252 GHAKGGGALSAVA----ATKSPVIFIG 274 (344)
Q Consensus 252 ~~~~~~~~~~~~~----~~~~pv~~~~ 274 (344)
.........+.+. ..+.|...++
T Consensus 215 l~~~~~~~~~~~~~~~~~~~~~~~~v~ 241 (360)
T 3t34_A 215 LMDKGTDAVEILEGRSFKLKYPWVGVV 241 (360)
T ss_dssp GCCTTCCSHHHHTTSSSCCSSCCEEEC
T ss_pred cCCCcccHHHHHcCccccccCCeEEEE
Confidence 8754333333332 2455555544
No 219
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.83 E-value=4.3e-08 Score=99.91 Aligned_cols=66 Identities=17% Similarity=0.098 Sum_probs=41.0
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchh--HHHHHHHHhccCCcCEEEeecCCCCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAFKQSVSVGAVIVTKMDGHA 254 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~--~~~~~~~~~~~~~~~~lVinK~D~~~ 254 (344)
.+.+.||||||....... +.. ....+|.+++|+|++.+.. .............+..+|+||+|...
T Consensus 81 ~~~i~liDTPG~~df~~~----~~~--~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 81 PHRINIIDTPGHVDFTIE----VER--SMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMG 148 (704)
T ss_pred ceeEEEEeCCCccchHHH----HHH--HHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCccc
Confidence 488999999998643222 211 1234799999999987632 22222222222234578899999864
No 220
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.82 E-value=1.4e-08 Score=103.03 Aligned_cols=127 Identities=17% Similarity=0.161 Sum_probs=66.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH---cCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQK---KGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGV 176 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~---~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l 176 (344)
+.+.++++|++|+||||++++|+..... .| +| .+.............. ++.+.....
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G-~V--~~g~~~~d~~~~e~~~-----giti~~~~~------------ 67 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRG-RV--EEGTTTTDYTPEAKLH-----RTTVRTGVA------------ 67 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCC-CG--GGTCCSSCCSHHHHHT-----TSCCSCEEE------------
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccc-ee--cCCcccccCCHHHHhc-----CCeEEecce------------
Confidence 4478999999999999999999854321 11 11 1110000000001111 111100000
Q ss_pred HHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchh--HHHHHHHHhccCCcCEEEeecCCCC
Q 019214 177 ETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAFKQSVSVGAVIVTKMDGH 253 (344)
Q Consensus 177 ~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~--~~~~~~~~~~~~~~~~lVinK~D~~ 253 (344)
.+...++.+.|+||||........ ... ...+|.+++|+|++.+.+ .............+..+|+||+|..
T Consensus 68 -~~~~~~~~~nliDTpG~~~f~~~~----~~~--l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 68 -PLLFRGHRVFLLDAPGYGDFVGEI----RGA--LEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp -EEEETTEEEEEEECCCSGGGHHHH----HHH--HHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred -EEeeCCEEEEEEeCCCccchHHHH----HHH--HhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh
Confidence 000125677899999986533222 111 224789999999987632 2223333322223457889999987
No 221
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=98.82 E-value=2.9e-08 Score=93.49 Aligned_cols=38 Identities=18% Similarity=0.221 Sum_probs=35.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcC
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~ 140 (344)
+++.+.|++|+||||++.+||..++..|++|++||+ ++
T Consensus 3 ~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~-~~ 40 (374)
T 3igf_A 3 LILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL-AE 40 (374)
T ss_dssp EEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC-SC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC-CC
Confidence 577888999999999999999999999999999999 63
No 222
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.81 E-value=1.7e-09 Score=91.23 Aligned_cols=114 Identities=18% Similarity=0.186 Sum_probs=62.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...|+++|++||||||+++.|. +.... +.+.+... ..+. ..+ . ..
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~------~~~~~----~~~~~t~~---~~~~----~~~-~-~~---------------- 51 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFA------KDCFP----ENYVPTVF---ENYT----ASF-E-ID---------------- 51 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH------HSCCC----SSCCCCSE---EEEE----EEE-E-CS----------------
T ss_pred EEEEEEECCCCCCHHHHHHHHh------cCCCC----CCCCCccc---eeEE----EEE-E-EC----------------
Confidence 4678999999999999999998 32210 00110000 0000 000 0 00
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH----HHHHHhc--cCCcCEEEeecCCCCC
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQ--SVSVGAVIVTKMDGHA 254 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~----~~~~~~~--~~~~~~lVinK~D~~~ 254 (344)
...+.+.++||||..... .+. ......+|.+++|+|++....... ....+.. ...+..+|.||+|+..
T Consensus 52 ~~~~~~~i~Dt~G~~~~~-----~~~-~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 52 TQRIELSLWDTSGSPYYD-----NVR-PLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 125 (184)
T ss_dssp SCEEEEEEEEECCSGGGT-----TTG-GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred CEEEEEEEEECCCChhhh-----hhH-HhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhc
Confidence 014567899999974321 010 112346899999999986532221 1122222 1235578899999864
Q ss_pred C
Q 019214 255 K 255 (344)
Q Consensus 255 ~ 255 (344)
.
T Consensus 126 ~ 126 (184)
T 1m7b_A 126 D 126 (184)
T ss_dssp C
T ss_pred c
Confidence 3
No 223
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.80 E-value=1.8e-08 Score=87.29 Aligned_cols=112 Identities=19% Similarity=0.169 Sum_probs=63.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcc--EEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKP--ALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE 177 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v--~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 177 (344)
+...|+++|++||||||++++|. +... .+.+.++. + ....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~------~~~~~~~~~~~~~~----------------~--~~~~-------------- 52 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLT------TDSVRPTVVSQEPL----------------S--AADY-------------- 52 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHH------HSSCCCBCCCSSCE----------------E--ETTG--------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHh------cCCCCCeeeecCce----------------E--EEEe--------------
Confidence 34679999999999999999998 3321 11111000 0 0000
Q ss_pred HHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCC-cc---hhHHHHHHHHh-------ccCCcCEEE
Q 019214 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSS-IG---QAAFDQAQAFK-------QSVSVGAVI 246 (344)
Q Consensus 178 ~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~-~~---~~~~~~~~~~~-------~~~~~~~lV 246 (344)
..+.+.++||||...........++.. ...+|.+++|+|++ .. .........+. ....+..+|
T Consensus 53 ----~~~~~~l~Dt~G~~~~~~~~~~~~~~~--~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv 126 (218)
T 1nrj_B 53 ----DGSGVTLVDFPGHVKLRYKLSDYLKTR--AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIA 126 (218)
T ss_dssp ----GGSSCEEEECCCCGGGTHHHHHHHHHH--GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEE
T ss_pred ----eCceEEEEECCCcHHHHHHHHHHHHhc--cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEE
Confidence 156789999999865432222222211 12368899999998 22 12222222111 122345788
Q ss_pred eecCCCCCC
Q 019214 247 VTKMDGHAK 255 (344)
Q Consensus 247 inK~D~~~~ 255 (344)
.||+|+...
T Consensus 127 ~nK~Dl~~~ 135 (218)
T 1nrj_B 127 CNKSELFTA 135 (218)
T ss_dssp EECTTSTTC
T ss_pred EEchHhccc
Confidence 999998654
No 224
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.79 E-value=1.4e-08 Score=93.41 Aligned_cols=118 Identities=18% Similarity=0.144 Sum_probs=64.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
..|+++|.+||||||+++.+. +.....++. ....+. ++....... .
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~------~~~~~~~~~-----------~~~~Ti-~~~~~~~~~----------------~ 49 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIF------SNYSAFDTR-----------RLGATI-DVEHSHLRF----------------L 49 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHH------SCCCTGGGG-----------GCCCCC-SEEEEEEEE----------------T
T ss_pred eEEEEECCCCCCHHHHHHHHH------hCCCCcccc-----------CcCCcc-ceEEEEEEe----------------C
Confidence 579999999999999999988 542222211 111111 111110000 0
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH--H-H---HHHHHhc--cCCcCEEEeecCCCC
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--F-D---QAQAFKQ--SVSVGAVIVTKMDGH 253 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~--~-~---~~~~~~~--~~~~~~lVinK~D~~ 253 (344)
.++.+.++||||...........+. -.....+|.+++|+|++..... . . ....+.. ...+..+|+||+|+.
T Consensus 50 ~~~~l~i~Dt~G~~~~~~~~~~~~~-~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~ 128 (307)
T 3r7w_A 50 GNMTLNLWDCGGQDVFMENYFTKQK-DHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLV 128 (307)
T ss_dssp TTEEEEEEEECCSHHHHHHHHTTTH-HHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGS
T ss_pred CceEEEEEECCCcHHHhhhhhhhHH-HHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeccccc
Confidence 1567889999997432111111111 1112468999999999865321 1 1 1222221 124567889999997
Q ss_pred C
Q 019214 254 A 254 (344)
Q Consensus 254 ~ 254 (344)
.
T Consensus 129 ~ 129 (307)
T 3r7w_A 129 Q 129 (307)
T ss_dssp C
T ss_pred c
Confidence 6
No 225
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.78 E-value=5.4e-09 Score=89.19 Aligned_cols=153 Identities=12% Similarity=0.051 Sum_probs=77.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
..|+++|.+||||||+++.+. |.+..+++. .+..............+
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~------~~~~~~~~~-----------~~~~~~~~~~~~~~~~~---------------- 53 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFA------GVHDSMDSD-----------XEVLGEDTYERTLMVDG---------------- 53 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHH------HHSCCC---------------GGGCTTEEEEEEEETT----------------
T ss_pred EEEEEECCCCCCHHHHHHHHh------cCcCCcCcc-----------ccccceeEEEEEEEECC----------------
Confidence 579999999999999999998 422222221 00000000000000000
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHh---c-cCCcCEEEeecCCCCC
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFK---Q-SVSVGAVIVTKMDGHA 254 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~---~-~~~~~~lVinK~D~~~ 254 (344)
..+.++++||+|..... . .+.. .....+|.+++|.|.+..... ......+. . ...+..+|.||+|+..
T Consensus 54 ~~~~l~~~Dt~~~~~~~-~---~~~~-~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~ 128 (192)
T 2cjw_A 54 ESATIILLDMWENKGEN-E---WLHD-HCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR 128 (192)
T ss_dssp EEEEEEEECCCCC-----C---TTGG-GHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGG
T ss_pred eEEEEEEEEeccCcchh-h---hHHH-hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhc
Confidence 13456789999964311 0 0111 111236888899988753221 11112121 1 1234578899999853
Q ss_pred Chh----hHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 255 KGG----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 255 ~~~----~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
... .........+ .+.+.+|+++|.| ++++++.+.+.+
T Consensus 129 ~r~v~~~~~~~~a~~~~------------------~~~~e~SA~~g~~-v~~lf~~l~~~~ 170 (192)
T 2cjw_A 129 XREVSVSEGRAXAVVFD------------------XKFIETSAAVQHN-VKELFEGIVRQV 170 (192)
T ss_dssp GCCSCHHHHHHHHHHTT------------------CEEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhC------------------CceEEeccccCCC-HHHHHHHHHHHH
Confidence 210 0001111111 1234478889999 999999887754
No 226
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.77 E-value=1.8e-08 Score=101.63 Aligned_cols=128 Identities=19% Similarity=0.141 Sum_probs=69.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeec-CcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA-DTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~-D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
+.|+|+|..++|||||+-+|...-..-. +..=|+. +.+ ..+ .+.....|+.+...... +.
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~-~~g~v~~g~~~--~D~---~~~EreRGITI~s~~~~-------------~~ 63 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAIT-ELGSVDKGTTR--TDN---TLLERQRGITIQTGITS-------------FQ 63 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCS-SCSSCCCSCCS--TTC---STTHHHHSSCSSCCCCC-------------CB
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCc-cccccccCCcc--cCC---cHHHHhCCCcEEeeeEE-------------EE
Confidence 4589999999999999999986543211 1100110 110 000 00001112222111110 11
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch--hHHHHHHHHhccCCcCEEEeecCCCCC
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQSVSVGAVIVTKMDGHA 254 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~--~~~~~~~~~~~~~~~~~lVinK~D~~~ 254 (344)
..++.+.||||||+.....+.... ...+|.+++|+|+..|. ......+......-+.++++||+|...
T Consensus 64 ~~~~~iNlIDTPGH~DF~~Ev~ra------L~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 64 WENTKVNIIDTPGHMDFLAEVYRS------LSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNG 133 (638)
T ss_dssp CSSCBCCCEECCCSSSTHHHHHHH------HTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSS
T ss_pred ECCEEEEEEECCCcHHHHHHHHHH------HHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEecccccc
Confidence 237888899999998654433222 23479999999999873 222222222222223478899999754
No 227
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.77 E-value=2.4e-08 Score=96.82 Aligned_cols=94 Identities=19% Similarity=0.309 Sum_probs=53.1
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch---------hHHHHHHHHhc-cCCcCEEEeecCCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ---------AAFDQAQAFKQ-SVSVGAVIVTKMDG 252 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~---------~~~~~~~~~~~-~~~~~~lVinK~D~ 252 (344)
++.+.|+||||.... ...+ ......+|.+++|+|++.+. ...+....... ..+..++|+||+|+
T Consensus 84 ~~~~~iiDtPGh~~f----~~~~--~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl 157 (458)
T 1f60_A 84 KYQVTVIDAPGHRDF----IKNM--ITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDS 157 (458)
T ss_dssp SEEEEEEECCCCTTH----HHHH--HHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGG
T ss_pred CceEEEEECCCcHHH----HHHH--HhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEcccc
Confidence 567899999997532 2222 22345789999999998652 22222222221 22334678999998
Q ss_pred CCC-hh---h----HHHHHHHhC-----CCeEEEe--cCCCCCcC
Q 019214 253 HAK-GG---G----ALSAVAATK-----SPVIFIG--TGEHMDEF 282 (344)
Q Consensus 253 ~~~-~~---~----~~~~~~~~~-----~pv~~~~--~g~~~~~l 282 (344)
... .. . ....+...+ .|+..++ .|.++.++
T Consensus 158 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 158 VKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp GTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 731 11 1 112223343 5677776 66666543
No 228
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.77 E-value=2.5e-08 Score=104.84 Aligned_cols=175 Identities=15% Similarity=0.115 Sum_probs=88.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEE--eecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPAL--VCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE 177 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~i--v~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 177 (344)
....|+++|.+|+|||||+++|.......|..... -..|.. ......|+.+.....
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~---------~~ErerGITIdva~v------------- 352 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNA---------PEEKARGITINTSHV------------- 352 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC------------------------------CCSCE-------------
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccc---------cccccCceeEEEEEE-------------
Confidence 34679999999999999999999765544431100 001110 000011111100000
Q ss_pred HHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc--hhHHHHHHHHhc-cCCcCEEEeecCCCCC
Q 019214 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QAAFDQAQAFKQ-SVSVGAVIVTKMDGHA 254 (344)
Q Consensus 178 ~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~--~~~~~~~~~~~~-~~~~~~lVinK~D~~~ 254 (344)
.+...++.+.|+||||... +...+ ......+|.+++|+|++.+ ....+....... ..+..++|+||+|...
T Consensus 353 ~f~~~~~kI~IIDTPGHed----F~~~m--i~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~ 426 (1289)
T 3avx_A 353 EYDTPTRHYAHVDCPGHAD----YVKNM--ITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVD 426 (1289)
T ss_dssp EEECSSCEEEEEECCCHHH----HHHHH--HHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCC
T ss_pred EEcCCCEEEEEEECCChHH----HHHHH--HHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeeccccc
Confidence 0001257889999999742 22222 2234468999999999875 222222222222 2222367899999975
Q ss_pred Chh-------hHHHHHHHhC-----CCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhCCC
Q 019214 255 KGG-------GALSAVAATK-----SPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (344)
Q Consensus 255 ~~~-------~~~~~~~~~~-----~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~~~ 313 (344)
... .....+...+ .|+..++--.+... .+. +..| +..|++.|.+.++.
T Consensus 427 d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng----~~~------w~eG-I~eLleaL~~~Ip~ 486 (1289)
T 3avx_A 427 DEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEG----DAE------WEAK-ILELAGFLDSYIPE 486 (1289)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTC----CHH------HHHH-HHHHHHHHHHTSCC
T ss_pred chhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCC----Ccc------cccc-chhhHhHHhhhcCC
Confidence 321 1112333333 34544442111100 111 1256 88999999887753
No 229
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.76 E-value=1.2e-07 Score=91.39 Aligned_cols=66 Identities=23% Similarity=0.294 Sum_probs=41.1
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch---------hHHHHHHHHhc-cCCcCEEEeecCCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ---------AAFDQAQAFKQ-SVSVGAVIVTKMDG 252 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~---------~~~~~~~~~~~-~~~~~~lVinK~D~ 252 (344)
++.+.|+||||...... .+ ......+|.+++|+|++.+. ...+....... ..++..+++||+|.
T Consensus 83 ~~~~~iiDtpG~~~f~~----~~--~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl 156 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVK----NM--ITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDL 156 (435)
T ss_dssp SCEEEECCCSSSTTHHH----HH--HHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGG
T ss_pred CeEEEEEECCCcHHHHH----HH--HhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccC
Confidence 67899999999865322 22 22345789999999998751 11111111111 22335788999998
Q ss_pred CC
Q 019214 253 HA 254 (344)
Q Consensus 253 ~~ 254 (344)
..
T Consensus 157 ~~ 158 (435)
T 1jny_A 157 TE 158 (435)
T ss_dssp SS
T ss_pred CC
Confidence 75
No 230
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.76 E-value=9.3e-09 Score=101.81 Aligned_cols=140 Identities=16% Similarity=0.153 Sum_probs=73.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH---H-----cCCc--cEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQ---K-----KGWK--PALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPV 169 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~---~-----~g~~--v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~ 169 (344)
+.+.|+|+|..++|||||+-+|..+-. + .|.. -.+.|.++ .....|+.+.....
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~-----------~EreRGITI~s~~~----- 93 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMA-----------MERERGISVTTSVM----- 93 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC-------------------------------CTTTEE-----
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChH-----------HHHHCCCcEeeceE-----
Confidence 447899999999999999999974321 1 1110 01122211 11112222211000
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH--HHHHHHHhccCCcCEEEe
Q 019214 170 RIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFKQSVSVGAVIV 247 (344)
Q Consensus 170 ~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~--~~~~~~~~~~~~~~~lVi 247 (344)
.+...++.+-||||||......+....+ ..+|.+++|+|+..|... ....+......-+.++++
T Consensus 94 --------~~~~~~~~iNlIDTPGHvDF~~Ev~raL------~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fI 159 (548)
T 3vqt_A 94 --------QFPYRDRVVNLLDTPGHQDFSEDTYRVL------TAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFV 159 (548)
T ss_dssp --------EEEETTEEEEEECCCCGGGCSHHHHHHH------HSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEE
T ss_pred --------EEEECCEEEEEEeCCCcHHHHHHHHHHH------HhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEE
Confidence 0112378889999999876554432222 247999999999988332 222232222223447889
Q ss_pred ecCCCCC-ChhhHHHHH-HHhCCC
Q 019214 248 TKMDGHA-KGGGALSAV-AATKSP 269 (344)
Q Consensus 248 nK~D~~~-~~~~~~~~~-~~~~~p 269 (344)
||+|... .....++.+ ..++..
T Consensus 160 NK~Dr~~ad~~~~~~~i~~~l~~~ 183 (548)
T 3vqt_A 160 NKMDREALHPLDVMADIEQHLQIE 183 (548)
T ss_dssp ECTTSCCCCHHHHHHHHHHHHTSE
T ss_pred ecccchhcchhHhhhhhhhhcCCc
Confidence 9999854 333444333 345544
No 231
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.76 E-value=3.2e-09 Score=89.73 Aligned_cols=166 Identities=20% Similarity=0.103 Sum_probs=79.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
..|+++|++||||||+++.++ |........ +....++.+....... .....
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~------~~~~~~~~~-------------~~~t~g~~~~~~~~~~----------~~~~~ 53 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLM------KTKKSDLGM-------------QSATVGIDVKDWPIQI----------RDKRK 53 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHT------CC------------------------CSEEEEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHh------cCCCccCCC-------------cceeccEEeEEeeecc----------ccCCC
Confidence 468999999999999999998 532111110 0001122211100000 00001
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHH----HHHHHHhc--cCCcCEEEeecCCCCCC
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF----DQAQAFKQ--SVSVGAVIVTKMDGHAK 255 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~----~~~~~~~~--~~~~~~lVinK~D~~~~ 255 (344)
..+.+.+.||||..... .+.. .....++.+++|.|.+.+.... .....+.. ...+..+|.||+|+...
T Consensus 54 ~~~~~~i~Dt~G~~~~~-----~~~~-~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 127 (184)
T 2zej_A 54 RDLVLNVWDFAGREEFY-----STHP-HFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDE 127 (184)
T ss_dssp --CEEEEEEECSHHHHH-----TTSH-HHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCH
T ss_pred CceEEEEEecCCCHHHH-----HhhH-HHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccc
Confidence 25677899999963211 1100 0112467888999987653211 12222221 12344677799998653
Q ss_pred hhhH---HHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCC-CChhHHHHHHHhhCCC
Q 019214 256 GGGA---LSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGM-GDWSGFMDKIHEVVPM 313 (344)
Q Consensus 256 ~~~~---~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~-g~i~~l~~~i~~~~~~ 313 (344)
.... ........ +.. .+....+.+.+|+++|. | ++.|++.|.+.+..
T Consensus 128 ~~~~~~~~~~~~~~~---------~~~-~~~~~~~~~~~Sa~~~~~~-~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 128 KQRKACMSKITKELL---------NKR-GFPAIRDYHFVNATEESDA-LAKLRKTIINESLN 178 (184)
T ss_dssp HHHHHHHHHHHHHTT---------TCT-TSCEEEEEEECCTTSCCHH-HHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHH---------Hhc-CCcchhheEEEecccCchh-HHHHHHHHHHHHhc
Confidence 2110 11111100 000 00000113457888886 8 99999998776543
No 232
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.74 E-value=4.8e-09 Score=96.78 Aligned_cols=168 Identities=14% Similarity=0.032 Sum_probs=83.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...|+++|.+||||||+++.+.. ... ... +.+ +............
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~------~~~--~~~--~~~---------t~~~~~~~~~~~~---------------- 199 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTT------NAF--PGE--YIP---------TVFDNYSANVMVD---------------- 199 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH------SCC--CCS--CCC---------CSEEEEEEEEEET----------------
T ss_pred eeEEEEECCCCCChHHHHHHHHh------CCC--Ccc--cCC---------cccceeEEEEEEC----------------
Confidence 36799999999999999999982 211 010 000 0000000000000
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH----HHHHHhcc--CCcCEEEeecCCCCC
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQS--VSVGAVIVTKMDGHA 254 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~----~~~~~~~~--~~~~~lVinK~D~~~ 254 (344)
...+.+.++||||..... .+ .......+|.+++|+|++....... ....+... ..+..+|.||+|+..
T Consensus 200 ~~~~~~~l~Dt~G~~~~~-----~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 273 (332)
T 2wkq_A 200 GKPVNLGLWDTAGLEDYD-----RL-RPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRD 273 (332)
T ss_dssp TEEEEEEEEEECCCGGGT-----TT-GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHT
T ss_pred CEEEEEEEEeCCCchhhh-----HH-HHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhccc
Confidence 013455699999974321 01 1112346899999999987533222 11222221 235588999999854
Q ss_pred ChhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 255 ~~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
.... ................++....-....+.+.+|+++|+| ++++++.|.+.+
T Consensus 274 ~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 328 (332)
T 2wkq_A 274 DKDT-IEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG-LKTVFDEAIRAV 328 (332)
T ss_dssp CHHH-HHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred ccch-hhhccccccccccHHHHHHHHHHcCCcEEEEecCCCCcC-HHHHHHHHHHHH
Confidence 3211 111111000000000000000000111345678899999 999999887653
No 233
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.74 E-value=4e-09 Score=91.05 Aligned_cols=113 Identities=19% Similarity=0.173 Sum_probs=62.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...|+++|.+||||||+++.+. +.+.. . .+.+... ..+. ..+. ..
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~------~~~~~---~-~~~~t~~---~~~~----~~~~--~~---------------- 72 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFA------KDCFP---E-NYVPTVF---ENYT----ASFE--ID---------------- 72 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH------HSCCC---S-SCCCCSE---EEEE----EEEE--SS----------------
T ss_pred eeEEEEECCCCCCHHHHHHHHh------cCCCC---C-CcCCccc---eeEE----EEEE--EC----------------
Confidence 4679999999999999999998 32211 0 0100000 0000 0000 01
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH----HHHHHhc--cCCcCEEEeecCCCCC
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQ--SVSVGAVIVTKMDGHA 254 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~----~~~~~~~--~~~~~~lVinK~D~~~ 254 (344)
...+.+.|+||||..... .+. ......+|.+++|+|++....... ....+.. ...+..+|.||+|+..
T Consensus 73 ~~~~~l~i~Dt~G~~~~~-----~~~-~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 73 TQRIELSLWDTSGSPYYD-----NVR-PLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 146 (205)
T ss_dssp SSEEEEEEEEECCSGGGT-----TTG-GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred CEEEEEEEEeCCCcHhhh-----HHH-HhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhcc
Confidence 014567899999974321 111 112346899999999986532221 1122222 1235578899999864
No 234
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=98.72 E-value=7.6e-08 Score=83.89 Aligned_cols=43 Identities=16% Similarity=0.142 Sum_probs=39.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA 144 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~ 144 (344)
..|.+.|+|||||||++.++|..+..+|++|.+++.|++....
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~ 49 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAE 49 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChh
Confidence 4578889999999999999999999999999999999986654
No 235
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.66 E-value=1.3e-08 Score=97.21 Aligned_cols=151 Identities=18% Similarity=0.237 Sum_probs=82.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccC-CcceeccCCCCCHHHHHHHHHHHHH
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKA-KIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~-~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
..++++|+||||||||++.|+ |.+..+-+. ++++.. .+..... .
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Ls------g~~~~i~~~------------~ftTl~p~~G~V~~-~---------------- 202 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMT------RAHPKIAPY------------PFTTLSPNLGVVEV-S---------------- 202 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHC------SSCCEECCC------------TTCSSCCEEEEEEC-S----------------
T ss_pred CEEEEECCCCCcHHHHHHHHH------cCCccccCc------------ccceecceeeEEEe-c----------------
Confidence 468999999999999999998 765543221 122211 1111110 0
Q ss_pred hCCCCEEEEcCCCCCcchHH---HHHHHHHhhhhcCCcEEEEEEcCC-cchhHH----HHHHHHhc--cCCcCEEEeecC
Q 019214 181 KENCDLIIVDTSGRHKQEAA---LFEEMRQVSEATNPDLVIFVMDSS-IGQAAF----DQAQAFKQ--SVSVGAVIVTKM 250 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~---~~~~l~~~~~~~~~d~illvvda~-~~~~~~----~~~~~~~~--~~~~~~lVinK~ 250 (344)
....+.+.||||....... +.... +.....++.+++++|.+ .....+ .....+.. ...+..+|+||+
T Consensus 203 -~~~~~~l~DtpGli~~a~~~~~L~~~f--l~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKl 279 (416)
T 1udx_A 203 -EEERFTLADIPGIIEGASEGKGLGLEF--LRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKV 279 (416)
T ss_dssp -SSCEEEEEECCCCCCCGGGSCCSCHHH--HHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECC
T ss_pred -CcceEEEEeccccccchhhhhhhhHHH--HHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECC
Confidence 0256789999997432110 00000 11123578999999986 211111 11222211 124568889999
Q ss_pred CCCCChhhHHHHH----HHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 251 DGHAKGGGALSAV----AATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 251 D~~~~~~~~~~~~----~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
|.... .....+ ...+. +.+++|+.+++| +++|++.|.+.+
T Consensus 280 Dl~~~--~~~~~l~~~l~~~g~------------------~vi~iSA~~g~g-i~eL~~~i~~~l 323 (416)
T 1udx_A 280 DLLEE--EAVKALADALAREGL------------------AVLPVSALTGAG-LPALKEALHALV 323 (416)
T ss_dssp TTSCH--HHHHHHHHHHHTTTS------------------CEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred ChhhH--HHHHHHHHHHHhcCC------------------eEEEEECCCccC-HHHHHHHHHHHH
Confidence 98764 222222 21122 335567778888 888888877655
No 236
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.65 E-value=1.1e-07 Score=80.90 Aligned_cols=69 Identities=16% Similarity=0.101 Sum_probs=39.2
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc--hhHHH---HHHHHh--ccCCcCEEEeecCCCCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QAAFD---QAQAFK--QSVSVGAVIVTKMDGHA 254 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~--~~~~~---~~~~~~--~~~~~~~lVinK~D~~~ 254 (344)
.+.+.++||||........ .........+|.+++|+|++.. ..... ...... ....+..+|.||+|+..
T Consensus 68 ~~~l~i~Dt~G~~~~~~~~---~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~ 143 (196)
T 3llu_A 68 FVNFQIWDFPGQMDFFDPT---FDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLS 143 (196)
T ss_dssp SCCEEEEECCSSCCTTCTT---CCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred eeEEEEEECCCCHHHHhhh---hhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCc
Confidence 5788999999975321100 0000112358999999999875 22111 222221 11235578899999765
No 237
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.64 E-value=5.8e-08 Score=84.17 Aligned_cols=113 Identities=18% Similarity=0.096 Sum_probs=62.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
...|+++|.+||||||+++++. +.+.. . .+.+ +............
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~------~~~~~---~-~~~~---------t~~~~~~~~~~~~---------------- 71 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLA------KDCYP---E-TYVP---------TVFENYTACLETE---------------- 71 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH------HSCCC---S-SCCC---------CSEEEEEEEEEC-----------------
T ss_pred eEEEEEECcCCCCHHHHHHHHh------cCCCC---C-CcCC---------eeeeeEEEEEEEC----------------
Confidence 4679999999999999999998 32211 0 0000 0000000000000
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhHHH----HHHHHhcc--CCcCEEEeecCCCCC
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQS--VSVGAVIVTKMDGHA 254 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~~~----~~~~~~~~--~~~~~lVinK~D~~~ 254 (344)
...+.+.|+||||...... +. -.....+|.+++|+|++....... ....+... ..+..+|.||+|+..
T Consensus 72 ~~~~~l~i~Dt~G~~~~~~-----~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 145 (214)
T 3q3j_B 72 EQRVELSLWDTSGSPYYDN-----VR-PLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRT 145 (214)
T ss_dssp -CEEEEEEEEECCSGGGTT-----TG-GGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGG
T ss_pred CEEEEEEEEECCCCHhHHH-----HH-HHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 1146678999999743210 10 112346899999999987533222 22222221 235578899999864
No 238
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=98.63 E-value=7.9e-08 Score=96.17 Aligned_cols=40 Identities=30% Similarity=0.405 Sum_probs=35.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCc
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~ 141 (344)
.++++.|++|+||||++.+||..+++.|++|.++|.||+.
T Consensus 328 ~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~Dp~~ 367 (589)
T 1ihu_A 328 GLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAA 367 (589)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC-
T ss_pred eEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCCCcc
Confidence 4566679999999999999999999999999999999863
No 239
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.62 E-value=1.5e-07 Score=88.08 Aligned_cols=103 Identities=15% Similarity=0.035 Sum_probs=51.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCC-cceeccCCCCCHHHHHHHHHHHHH
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAK-IPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~-v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
..++++|.|||||||++++|+ |.+ ..++. .++++... ..... . .......+.+......
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt------~~~-~~v~~-----------~p~tTi~p~~g~v~-~-~~~r~~~l~~~~~~~~ 62 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALT------KAG-IEAAN-----------YPFCTIEPNTGVVP-M-PDPRLDALAEIVKPER 62 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHH------HTC------------------CCCCCCCCSSEEE-C-CCHHHHHHHHHHCCSE
T ss_pred CEEEEECCCCCCHHHHHHHHH------CCC-CcccC-----------CCCceECceEEEEe-c-CCcccceeeeeecccc
Confidence 468999999999999999999 444 22222 12222211 10001 0 0000011100000000
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHHHH-H-hhhhcCCcEEEEEEcCCc
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEEMR-Q-VSEATNPDLVIFVMDSSI 225 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~l~-~-~~~~~~~d~illvvda~~ 225 (344)
.....+.|+||||....... .+.+. . +.....+|.+++|+|++.
T Consensus 63 ~~~~~i~lvDtpGl~~~a~~-~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 63 ILPTTMEFVDIAGLVAGASK-GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp EECCEEEEEECCSCCTTHHH-HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred eeeeEEEEEECCCCcccccc-cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 01256889999998754321 11111 1 122357899999999975
No 240
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=98.61 E-value=2.3e-06 Score=76.16 Aligned_cols=167 Identities=14% Similarity=0.161 Sum_probs=90.5
Q ss_pred CCeEEEEEcCC-CCCHHHHHHHHHHHHHHcCCccEEee-----cCcCcchhHHHHHhhcccCC-cceeccCCCCC-----
Q 019214 100 KPSVIMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVC-----ADTFRAGAFDQLKQNATKAK-IPFYGSYTESD----- 167 (344)
Q Consensus 100 ~~~ii~ivG~~-GvGKTTl~~~La~~l~~~g~~v~iv~-----~D~~~~~~~~~l~~~~~~~~-v~~~~~~~~~~----- 167 (344)
..+.+.|+|.. |||||+++..|+..|.++|++|+..- +.+.. .....+...+.... ...+.-.....
T Consensus 25 ~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fKPv~~g~~~~~-~D~~~~~~~~g~~~~~~~~~~~~p~sP~~aa 103 (251)
T 3fgn_A 25 HMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCKPVQTGTARGD-DDLAEVGRLAGVTQLAGLARYPQPMAPAAAA 103 (251)
T ss_dssp SCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEEEEECCGGGTC-CHHHHHHHHHCCCEEEEEEECSSSSCHHHHH
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeeecCCCCCC-HHHHHHHHHcCCCCCCCCeeECCCCChHHHH
Confidence 34678888887 99999999999999999999998764 21110 22222222222110 01111000001
Q ss_pred --------HHHHHHHHHHHHHhCCCCEEEEcCCCCCc-c-hHH--HHHHHHHhhhhcCCcEEEEEEcCCcch--hHHHHH
Q 019214 168 --------PVRIAVEGVETFKKENCDLIIVDTSGRHK-Q-EAA--LFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQA 233 (344)
Q Consensus 168 --------~~~~~~~~l~~~~~~~~d~vlIDT~G~~~-~-~~~--~~~~l~~~~~~~~~d~illvvda~~~~--~~~~~~ 233 (344)
..+.+.+.+.++ ..++|+++||+||-.. + ... ....+ .+. -...+++|+++..+. ......
T Consensus 104 ~~~~~~~~~~~~i~~~~~~l-~~~~D~vlIEGagGl~~pl~~~~~~~adl---a~~-l~~pVILV~~~~~g~i~~~~lt~ 178 (251)
T 3fgn_A 104 EHAGMALPARDQIVRLIADL-DRPGRLTLVEGAGGLLVELAEPGVTLRDV---AVD-VAAAALVVVTADLGTLNHTKLTL 178 (251)
T ss_dssp HHTTCCCCCHHHHHHHHHTT-CCTTCEEEEECSSSTTCEEETTTEEHHHH---HHH-TTCEEEEEECSSTTHHHHHHHHH
T ss_pred HHcCCCCCCHHHHHHHHHHH-HhcCCEEEEECCCCCcCCcCcccchHHHH---HHH-cCCCEEEEEcCCCccHHHHHHHH
Confidence 112223333333 3589999999987431 1 111 11111 111 245789999997652 222222
Q ss_pred HHH-hccCCcCEEEeecCCCCC--ChhhHHHHHHHhCCCeEEE
Q 019214 234 QAF-KQSVSVGAVIVTKMDGHA--KGGGALSAVAATKSPVIFI 273 (344)
Q Consensus 234 ~~~-~~~~~~~~lVinK~D~~~--~~~~~~~~~~~~~~pv~~~ 273 (344)
..+ ....++.++|+||+.... ........+.+. +|++-+
T Consensus 179 ~~l~~~g~~i~GvIlN~v~~~~~~~~~~~~~~le~~-vpvLG~ 220 (251)
T 3fgn_A 179 EALAAQQVSCAGLVIGSWPDPPGLVAASNRSALARI-AMVRAA 220 (251)
T ss_dssp HHHHHTTCCEEEEEEEEECSSCCHHHHHHHHHHHHH-SCEEEE
T ss_pred HHHHhCCCCEEEEEEECCCCchhhhhhhHHHHHHHh-CCEEEE
Confidence 222 334577899999985322 123345666666 888755
No 241
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.60 E-value=5.6e-08 Score=94.53 Aligned_cols=66 Identities=18% Similarity=0.349 Sum_probs=36.7
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch---------hHHHHHHHHhc-cCCcCEEEeecCCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ---------AAFDQAQAFKQ-SVSVGAVIVTKMDG 252 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~---------~~~~~~~~~~~-~~~~~~lVinK~D~ 252 (344)
+..+.|+||||..... ..+ ......+|.+++|+|++.+. ...+....... ..+..++++||+|+
T Consensus 120 ~~~~~iiDtPGh~~f~----~~~--~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl 193 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGYV----TNM--INGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDE 193 (467)
T ss_dssp SEEEEECCCCC-----------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTS
T ss_pred CeEEEEEECCCcHHHH----HHH--HhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccC
Confidence 5678999999985322 222 12234689999999998762 22232222222 22224678999998
Q ss_pred CC
Q 019214 253 HA 254 (344)
Q Consensus 253 ~~ 254 (344)
..
T Consensus 194 ~~ 195 (467)
T 1r5b_A 194 PS 195 (467)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 242
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=98.58 E-value=2e-06 Score=75.42 Aligned_cols=168 Identities=10% Similarity=0.078 Sum_probs=88.5
Q ss_pred CeEEEEEcC-CCCCHHHHHHHHHHHHHHcCCccEEee---cCcCc--chh--HHHHHhhcccC-C----cceeccCCCCC
Q 019214 101 PSVIMFVGL-QGSGKTTTCTKYAYYHQKKGWKPALVC---ADTFR--AGA--FDQLKQNATKA-K----IPFYGSYTESD 167 (344)
Q Consensus 101 ~~ii~ivG~-~GvGKTTl~~~La~~l~~~g~~v~iv~---~D~~~--~~~--~~~l~~~~~~~-~----v~~~~~~~~~~ 167 (344)
.+.+.|+|. +|+|||+++..|+..|.++|++|+..- ..+.. .+. .+-+...+... . .++.. .....
T Consensus 4 mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~KPv~~g~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~-~~p~s 82 (228)
T 3of5_A 4 MKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLKPVASGQSQFSELCEDVESILNAYKHKFTAAEINLISF-NQAVA 82 (228)
T ss_dssp CEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEECSEEESBCSSSSSBHHHHHHHHHTTTSSCHHHHCSEEE-SSSSC
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEecceeecCccCCCCCChHHHHHHhcCCCCChhhEEEEEE-CCCCC
Confidence 467888888 599999999999999999999998754 11111 110 11111111110 0 01110 00111
Q ss_pred ------------HHHHHHHHHHHHHhCCCCEEEEcCCCCC-cc--hHHHHHHHHHhhhhcCCcEEEEEEcCCcch--hHH
Q 019214 168 ------------PVRIAVEGVETFKKENCDLIIVDTSGRH-KQ--EAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAF 230 (344)
Q Consensus 168 ------------~~~~~~~~l~~~~~~~~d~vlIDT~G~~-~~--~~~~~~~l~~~~~~~~~d~illvvda~~~~--~~~ 230 (344)
....+.+.+++....+||+++||+||.. .+ .......+ .... ...+++|+++..+. ...
T Consensus 83 p~~aa~~~~~~i~~~~i~~~~~~~l~~~~D~vlIEgaggl~~p~~~~~~~adl---a~~l-~~pviLV~~~~~~~i~~~~ 158 (228)
T 3of5_A 83 PHIIAAKTKVDISIENLKQFIEDKYNQDLDILFIEGAGGLLTPYSDHTTQLDL---IKAL-QIPVLLVSAIKVGCINHTL 158 (228)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHGGGGSSCSEEEEEEEEETTCBSSSSCBHHHH---HHHH-TCCEEEEEECSTTHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHccCCEEEEECCCccccccccchhHHHH---HHHc-CCCEEEEEcCCcchHHHHH
Confidence 1122333343312358999999997632 11 10001111 1111 24588899987652 222
Q ss_pred HHHHHH-hccCCcCEEEeecCCCCC-ChhhHHHHHHH-hCCCeEEE
Q 019214 231 DQAQAF-KQSVSVGAVIVTKMDGHA-KGGGALSAVAA-TKSPVIFI 273 (344)
Q Consensus 231 ~~~~~~-~~~~~~~~lVinK~D~~~-~~~~~~~~~~~-~~~pv~~~ 273 (344)
.....+ ....++.++|+|+++... ........+.+ ++.|+.-+
T Consensus 159 ~~~~~l~~~~~~i~GvIlN~~~~~~~~~~~~~~~l~~~~g~pvLG~ 204 (228)
T 3of5_A 159 LTINELNRHNIKLAGWIANCNDSNIKYIDEQINTIEELSGYKCSAK 204 (228)
T ss_dssp HHHHHHHHTTCCEEEEEEEECCTTCSCHHHHHHHHHHHHSCCCSEE
T ss_pred HHHHHHHhCCCcEEEEEEECcCCcchhhHHHHHHHHHhhCCCEEEE
Confidence 222222 334567899999998753 33344555544 68887654
No 243
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.56 E-value=4.3e-08 Score=83.79 Aligned_cols=148 Identities=14% Similarity=0.071 Sum_probs=78.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCccee---ccCCCCCHHHHHHHHHHH
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFY---GSYTESDPVRIAVEGVET 178 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~---~~~~~~~~~~~~~~~l~~ 178 (344)
..++++|++||||||+++.|+ |........ + ..+.++. ....+
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~------~~~~~~~~~-~--------------t~~~~~~~~~i~~~g------------- 51 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFT------RNEFNLESK-S--------------TIGVEFATRSIQVDG------------- 51 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHH------HSCCCC----C--------------CCSCEEEEEEEEETT-------------
T ss_pred EEEEEECcCCCCHHHHHHHHh------cCCCCCCCC-C--------------ccceeEEEEEEEECC-------------
Confidence 568999999999999999999 543211110 0 0000000 00000
Q ss_pred HHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH---HHHHHHHhc---cCCcCEEEeecCCC
Q 019214 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ---SVSVGAVIVTKMDG 252 (344)
Q Consensus 179 ~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~---~~~~~~~~~---~~~~~~lVinK~D~ 252 (344)
..+.+.++||||...... +. ......++.+++|.|.+..... ......+.. ...+..+|+||+|+
T Consensus 52 ---~~~~~~i~Dt~g~~~~~~-----~~-~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl 122 (199)
T 2f9l_A 52 ---KTIKAQIWDTAGQERYRR-----IT-SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 122 (199)
T ss_dssp ---EEEEEEEEECSSGGGTTC-----CC-HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred ---EEEEEEEEECCCchhhhh-----hh-HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccc
Confidence 134567899999632110 00 0112357889999998754221 112222221 22345788999998
Q ss_pred CCC----hhhHHHHHHHhCCCeEEEecCCCCCcCcCCChHHHHHHHhCCCChhHHHHHHHhhC
Q 019214 253 HAK----GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (344)
Q Consensus 253 ~~~----~~~~~~~~~~~~~pv~~~~~g~~~~~l~~~~~~~~is~~~g~g~i~~l~~~i~~~~ 311 (344)
... .......+...++++ +.+|++.+.| ++++++.|.+.+
T Consensus 123 ~~~~~~~~~~a~~l~~~~~~~~------------------~d~Sal~~~~-i~~l~~~l~~~~ 166 (199)
T 2f9l_A 123 RHLRAVPTDEARAFAEKNNLSF------------------IETSALDSTN-VEEAFKNILTEI 166 (199)
T ss_dssp GGGCCSCHHHHHHHHHHTTCEE------------------EECCTTTCTT-HHHHHHHHHHHH
T ss_pred ccccCcCHHHHHHHHHHcCCeE------------------EEEeCCCCCC-HHHHHHHHHHHH
Confidence 532 122223333222211 1156678888 888888877654
No 244
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.46 E-value=3e-06 Score=78.12 Aligned_cols=173 Identities=17% Similarity=0.211 Sum_probs=90.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchh----HHHH-HhhcccCCcceeccCCCCCHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA----FDQL-KQNATKAKIPFYGSYTESDPVRIAVEG 175 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~----~~~l-~~~~~~~~v~~~~~~~~~~~~~~~~~~ 175 (344)
..+++++|+.|+||||+++.|+... .|++++|+..|.-...- .... ....+..+.- ..+....+....+...
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~--~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gC-icc~~~~~~~~~l~~l 80 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ--HGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGC-ICCSRSNELEDALLDL 80 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC--CCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSC-EEECTTSCHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc--CCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCc-eEEcccHHHHHHHHHH
Confidence 4689999999999999999998653 57899999887422110 0000 0000000100 1111123333322222
Q ss_pred HHHHHhC--CCCEEEEcCCCCCcchHHHHHHH---HHhhhhcCCcEEEEEEcCCcchhHHHH-HHHHhccCCcCEEEeec
Q 019214 176 VETFKKE--NCDLIIVDTSGRHKQEAALFEEM---RQVSEATNPDLVIFVMDSSIGQAAFDQ-AQAFKQSVSVGAVIVTK 249 (344)
Q Consensus 176 l~~~~~~--~~d~vlIDT~G~~~~~~~~~~~l---~~~~~~~~~d~illvvda~~~~~~~~~-~~~~~~~~~~~~lVinK 249 (344)
+...+.. .++++++|+.|...+. .....+ .........+.++-++|+......... .....+......+++||
T Consensus 81 ~~~~q~~~~~~~~~v~E~~~l~~p~-~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~k 159 (318)
T 1nij_A 81 LDNLDKGNIQFDRLVIECTGMADPG-PIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTK 159 (318)
T ss_dssp HHHHHHTSCCCSEEEEEEETTCCHH-HHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEEC
T ss_pred HhHHhcCCCCCCEEEEeCCCCCCHH-HHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEEC
Confidence 2111222 3499999999987543 221111 111112234557778888654222211 11112223456778899
Q ss_pred CCCCCChhhHHHHHHH--hCCCeEEEecCC
Q 019214 250 MDGHAKGGGALSAVAA--TKSPVIFIGTGE 277 (344)
Q Consensus 250 ~D~~~~~~~~~~~~~~--~~~pv~~~~~g~ 277 (344)
.|.......+.+.+.. .+.++..++.++
T Consensus 160 ~dl~de~~~l~~~l~~l~~~~~ii~~sh~~ 189 (318)
T 1nij_A 160 TDVAGEAEKLHERLARINARAPVYTVTHGD 189 (318)
T ss_dssp TTTCSCTHHHHHHHHHHCSSSCEEECCSSC
T ss_pred cccCCHHHHHHHHHHHhCCCCeEEEecccC
Confidence 9987543344444443 357788888764
No 245
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.45 E-value=3.9e-08 Score=92.71 Aligned_cols=122 Identities=10% Similarity=0.049 Sum_probs=64.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
+.++++|.+||||||++|.|.........+...++. .+++++....+..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~-----------~~gtT~~~~~~~~-------------------- 209 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSH-----------FPGTTLDLIDIPL-------------------- 209 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEEC-----------CC----CEEEEES--------------------
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCC-----------CCCeecceEEEEe--------------------
Confidence 469999999999999999999553221112333333 2233322221110
Q ss_pred CCCCEEEEcCCCCCcch--HH-H-HHHHHHhhhhcCCcEEEEEEcCCcc--hhHHHHHHHHhccCCcCEEEeecCCCCCC
Q 019214 182 ENCDLIIVDTSGRHKQE--AA-L-FEEMRQVSEATNPDLVIFVMDSSIG--QAAFDQAQAFKQSVSVGAVIVTKMDGHAK 255 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~--~~-~-~~~l~~~~~~~~~d~illvvda~~~--~~~~~~~~~~~~~~~~~~lVinK~D~~~~ 255 (344)
+..+.++||||+.... .. + .+.+..+......+.+++++++... .........+.....+..+++||.|..+.
T Consensus 210 -~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~~ 288 (368)
T 3h2y_A 210 -DEESSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIHR 288 (368)
T ss_dssp -SSSCEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEE
T ss_pred -cCCeEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCcccccc
Confidence 2336899999986432 11 1 1223333333456788999998432 11111111111122345788999998654
No 246
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.42 E-value=3.5e-07 Score=87.26 Aligned_cols=19 Identities=37% Similarity=0.476 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q 019214 104 IMFVGLQGSGKTTTCTKYA 122 (344)
Q Consensus 104 i~ivG~~GvGKTTl~~~La 122 (344)
++++|++|+|||||++.|+
T Consensus 45 vaLvG~nGaGKSTLln~L~ 63 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLF 63 (427)
T ss_dssp EEEECSTTSSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 9999999999999999999
No 247
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.41 E-value=1.6e-07 Score=79.85 Aligned_cols=21 Identities=19% Similarity=0.518 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 019214 102 SVIMFVGLQGSGKTTTCTKYA 122 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La 122 (344)
..++++|++||||||+++.++
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~ 50 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFT 50 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHh
Confidence 578999999999999999998
No 248
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.40 E-value=2.1e-08 Score=94.62 Aligned_cols=121 Identities=12% Similarity=0.075 Sum_probs=66.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
+.++++|.|||||||++|.|........ +...++. .+++++....+..
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~-~~~~~~~-----------~~gtT~~~~~~~~-------------------- 210 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKG-NVITTSY-----------FPGTTLDMIEIPL-------------------- 210 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTT-CCCEEEE-----------CTTSSCEEEEEEC--------------------
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCc-cceeecC-----------CCCeEEeeEEEEe--------------------
Confidence 4599999999999999999996543322 2333333 2233332221110
Q ss_pred CCCCEEEEcCCCCCcch--HH-HH-HHHHHhhhhcCCcEEEEEEcCCcc--hhHHHHHHHHhccCCcCEEEeecCCCCCC
Q 019214 182 ENCDLIIVDTSGRHKQE--AA-LF-EEMRQVSEATNPDLVIFVMDSSIG--QAAFDQAQAFKQSVSVGAVIVTKMDGHAK 255 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~--~~-~~-~~l~~~~~~~~~d~illvvda~~~--~~~~~~~~~~~~~~~~~~lVinK~D~~~~ 255 (344)
+..+.++||||+.... .. +. +.+..+......+.+++++++... .........+.....+..+++||.|..+.
T Consensus 211 -~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 211 -ESGATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVHR 289 (369)
T ss_dssp -STTCEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEE
T ss_pred -CCCeEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCccccc
Confidence 2346899999986432 11 11 112223222457889999999532 11111111111122245788999998643
No 249
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.37 E-value=6.4e-07 Score=84.14 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 019214 102 SVIMFVGLQGSGKTTTCTKYA 122 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La 122 (344)
..|+++|++|+||||+++.|.
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~ 58 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLF 58 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHh
Confidence 458999999999999999987
No 250
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.35 E-value=1.7e-06 Score=88.40 Aligned_cols=129 Identities=21% Similarity=0.181 Sum_probs=67.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH---HcCC---ccEEeecCcCcchhHHHHHhhcccC--CcceeccCCCCCHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQ---KKGW---KPALVCADTFRAGAFDQLKQNATKA--KIPFYGSYTESDPVRI 171 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~---~~g~---~v~iv~~D~~~~~~~~~l~~~~~~~--~v~~~~~~~~~~~~~~ 171 (344)
+.+.|+|+|..++|||||+-+|...-. +.|. .....|.++ .|+ .+.-+.. .+.+.-.....
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~-----~E~-eRGITI~s~~~s~~~~~~~~----- 80 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMV-----QEQ-ERGITITSAAVTTFWKGSRG----- 80 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------------CCEEEEEECCTTS-----
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChH-----HHH-HcCCeEEeeeEEEEeccCcC-----
Confidence 447899999999999999999975542 2232 011112111 011 1111110 11111100000
Q ss_pred HHHHHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH--HHHHH-HHhccCCcCEEEee
Q 019214 172 AVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQ-AFKQSVSVGAVIVT 248 (344)
Q Consensus 172 ~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~--~~~~~-~~~~~~~~~~lVin 248 (344)
..++|-+-||||||+.....+....+ + .+|.+++|+|+..|... ....+ .....++ .++++|
T Consensus 81 --------~~~~~~iNlIDTPGHvDF~~Ev~~aL----r--~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp-~i~~iN 145 (709)
T 4fn5_A 81 --------QYDNYRVNVIDTPGHVDFTIEVERSL----R--VLDGAVVVFCGTSGVEPQSETVWRQANKYGVP-RIVYVN 145 (709)
T ss_dssp --------CSCCEEEEEECCCSCTTCHHHHHHHH----H--HCSEEEEEEETTTCSCHHHHHHHHHHHHHTCC-EEEEEE
T ss_pred --------CCCCEEEEEEeCCCCcccHHHHHHHH----H--HhCeEEEEEECCCCCchhHHHHHHHHHHcCCC-eEEEEc
Confidence 01256788999999986654432222 2 37999999999988322 22222 2333444 488999
Q ss_pred cCCCCC
Q 019214 249 KMDGHA 254 (344)
Q Consensus 249 K~D~~~ 254 (344)
|+|...
T Consensus 146 KiDr~~ 151 (709)
T 4fn5_A 146 KMDRQG 151 (709)
T ss_dssp CSSSTT
T ss_pred cccccC
Confidence 999854
No 251
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.35 E-value=9.5e-07 Score=83.00 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYY 124 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~ 124 (344)
.++++|+|||||||+++.|+..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999943
No 252
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=98.33 E-value=3.6e-05 Score=67.95 Aligned_cols=148 Identities=11% Similarity=0.133 Sum_probs=81.1
Q ss_pred CCeEEEEEcCC-CCCHHHHHHHHHHHHHHcCCccEEee-----cCcC--cchhHHHH----Hhhc-cc--CC-cceeccC
Q 019214 100 KPSVIMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVC-----ADTF--RAGAFDQL----KQNA-TK--AK-IPFYGSY 163 (344)
Q Consensus 100 ~~~ii~ivG~~-GvGKTTl~~~La~~l~~~g~~v~iv~-----~D~~--~~~~~~~l----~~~~-~~--~~-v~~~~~~ 163 (344)
..+.+.|+|.. |||||+++..|+..|.++|++|+..- +++. .......+ ...+ .. .. .++.. .
T Consensus 20 m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fKPv~~g~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~p~~~-~ 98 (242)
T 3qxc_A 20 QGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLKPIETGVNDAINHSSDAHLFLQDNRLLDRSLTLKDISFYRY-H 98 (242)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEECCEECSCCTTTCCCSHHHHHHHHHHTTCTTCCHHHHCCEEC-S
T ss_pred cCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEeeeecCCcccCCCCchHHHHHHHHHHHhCCCChHHeeeEEE-C
Confidence 34778888884 99999999999999999999998764 2211 11122112 2211 10 00 11110 0
Q ss_pred CC--------------CCHHHHHHHHHHHHHhCCCCEEEEcCCCCCcc---hHHHHHHHHHhhhhcCCcEEEEEEcCCcc
Q 019214 164 TE--------------SDPVRIAVEGVETFKKENCDLIIVDTSGRHKQ---EAALFEEMRQVSEATNPDLVIFVMDSSIG 226 (344)
Q Consensus 164 ~~--------------~~~~~~~~~~l~~~~~~~~d~vlIDT~G~~~~---~~~~~~~l~~~~~~~~~d~illvvda~~~ 226 (344)
.. ....+.+.+.++++ ...+|+++||+||-... .......+ .+.. ...+++|+++..+
T Consensus 99 ~p~sp~~aa~~~g~~~~i~~~~I~~~~~~l-~~~~D~vlIEGagGl~~pl~~~~~~adl---A~~l-~~pVILV~~~~lg 173 (242)
T 3qxc_A 99 KVSAPLIAQQEEDPNAPIDTDNLTQRLHNF-TKTYDLVIVEGAGGLCVPITLEENMLDF---ALKL-KAKMLLISHDNLG 173 (242)
T ss_dssp SSSCHHHHHHHHCTTCCCCHHHHHHHHHHG-GGTCSEEEEECCSCTTCBSSSSCBHHHH---HHHH-TCEEEEEECCSTT
T ss_pred CCCChHHHHHHcCCCCcCCHHHHHHHHHHH-HhcCCEEEEECCCCccccccccchHHHH---HHHc-CCCEEEEEcCCCc
Confidence 00 11122333444444 34899999999874321 10011111 1111 3468999999776
Q ss_pred h--hHHHHHHHHh-ccCCcCEEEeecCCCCC
Q 019214 227 Q--AAFDQAQAFK-QSVSVGAVIVTKMDGHA 254 (344)
Q Consensus 227 ~--~~~~~~~~~~-~~~~~~~lVinK~D~~~ 254 (344)
. ........+. ...+ .++|+|+++...
T Consensus 174 ~i~~~~lt~~~l~~~g~~-~GvIlN~v~~~~ 203 (242)
T 3qxc_A 174 LINDCLLNDFLLKSHQLD-YKIAINLKGNNT 203 (242)
T ss_dssp HHHHHHHHHHHHHTSSSC-EEEEECCCTTCC
T ss_pred HHHHHHHHHHHHHhCCCC-EEEEEeCCCCcc
Confidence 2 2222333333 3456 899999998654
No 253
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.32 E-value=7.4e-07 Score=80.80 Aligned_cols=32 Identities=19% Similarity=0.236 Sum_probs=24.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeec
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~ 137 (344)
++..++++|.|||||||++|.|. |.+++.++.
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~------~~~~~~~~~ 150 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLA------KKNIAKTGD 150 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHH------TSCCC----
T ss_pred CCceEEEEecCCCchHHHHHHHh------cCceeecCC
Confidence 44679999999999999999999 887766655
No 254
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.28 E-value=4.4e-07 Score=94.27 Aligned_cols=65 Identities=14% Similarity=0.136 Sum_probs=40.8
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcchhH--HHHHHHHhccCCcCEEEeecCCCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFKQSVSVGAVIVTKMDGH 253 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~~~--~~~~~~~~~~~~~~~lVinK~D~~ 253 (344)
++.+.|+||||......... .....+|.+++|+|++.+... ............+..+|+||+|..
T Consensus 97 ~~~i~liDTPG~~df~~~~~------~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVT------AALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHH------HHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred CceEEEEECcCchhhHHHHH------HHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcc
Confidence 56788999999876443221 112358999999999876322 222222222223457899999975
No 255
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.26 E-value=1.2e-06 Score=83.57 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYA 122 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La 122 (344)
+.+++++|++||||||+++.|+
T Consensus 69 ~~~valvG~nGaGKSTLln~L~ 90 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLR 90 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHh
Confidence 3689999999999999999999
No 256
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.25 E-value=1.1e-06 Score=83.14 Aligned_cols=104 Identities=15% Similarity=0.009 Sum_probs=44.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHHh
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 181 (344)
..++++|+|||||||+++.|+ |.++ .++. .++++.....-.... .......+.+.......
T Consensus 23 ~kvgIVG~pnvGKSTL~n~Lt------g~~~-~~~~-----------~p~tTi~p~~g~v~v-~~~r~~~l~~~~~p~~~ 83 (396)
T 2ohf_A 23 LKIGIVGLPNVGKSTFFNVLT------NSQA-SAEN-----------FPFCTIDPNESRVPV-PDERFDFLCQYHKPASK 83 (396)
T ss_dssp CCEEEECCSSSSHHHHHHHHH------C-------------------------CCSEEEEEC-CCHHHHHHHHHHCCSEE
T ss_pred CEEEEECCCCCCHHHHHHHHH------CCCc-cccC-----------CCccccCceeEEEEE-CCccceeeccccCcccc
Confidence 569999999999999999999 7655 3332 223332111000000 00001110000000000
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHH--HHhhhhcCCcEEEEEEcCCc
Q 019214 182 ENCDLIIVDTSGRHKQEAALFEEM--RQVSEATNPDLVIFVMDSSI 225 (344)
Q Consensus 182 ~~~d~vlIDT~G~~~~~~~~~~~l--~~~~~~~~~d~illvvda~~ 225 (344)
-...+.++||||....... .+.+ ..+.....+|.+++|+|++.
T Consensus 84 ~~~~i~lvDtpGl~~~as~-~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 84 IPAFLNVVDIAGLVKGAHN-GQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp ECCEEEEEECCC------------CCHHHHHHHTSSSEEEEEEC--
T ss_pred cccccEEEECCCcccccch-hhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 1345889999998653321 1112 12233457899999999864
No 257
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.25 E-value=5.2e-06 Score=73.94 Aligned_cols=81 Identities=12% Similarity=-0.029 Sum_probs=45.1
Q ss_pred CCcEEEEEEcCCcc--hhH---HHHHHHHh----ccCCcCEEEeecCCCCCChhh-HHHHHHHhCCCeEEEecCCCCCcC
Q 019214 213 NPDLVIFVMDSSIG--QAA---FDQAQAFK----QSVSVGAVIVTKMDGHAKGGG-ALSAVAATKSPVIFIGTGEHMDEF 282 (344)
Q Consensus 213 ~~d~illvvda~~~--~~~---~~~~~~~~----~~~~~~~lVinK~D~~~~~~~-~~~~~~~~~~pv~~~~~g~~~~~l 282 (344)
.+|.+++|+|++.. ... ......+. ....+..+|.||+|+...... ....+.. .
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~-----------~----- 225 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFAL-----------S----- 225 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHH-----------T-----
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHH-----------h-----
Confidence 47999999998763 221 11122221 122445888999998643211 1111111 0
Q ss_pred cCCChHHHHHHHhCCCChhHHHHHHHhh
Q 019214 283 EVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (344)
Q Consensus 283 ~~~~~~~~is~~~g~g~i~~l~~~i~~~ 310 (344)
....+.+.+|+++|.| ++++++.|.+.
T Consensus 226 ~~~~~~~e~SAk~g~g-v~elf~~l~~~ 252 (255)
T 3c5h_A 226 KKNLQVVETSARSNVN-VDLAFSTLVQL 252 (255)
T ss_dssp SSSCCEEECBTTTTBS-HHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCC-HHHHHHHHHHH
Confidence 0011334578889999 99999988764
No 258
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.23 E-value=8.1e-06 Score=74.60 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=20.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYA 122 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La 122 (344)
...|+++|++||||||+++.|.
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~ 39 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLF 39 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHh
Confidence 4568999999999999999988
No 259
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.22 E-value=1.1e-06 Score=74.81 Aligned_cols=28 Identities=29% Similarity=0.370 Sum_probs=24.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcC
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKG 129 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g 129 (344)
.+++++|++|+||||++..|+..+...|
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred CEEEEECCCCChHHHHHHHHHhhcccCC
Confidence 3689999999999999999999887556
No 260
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.22 E-value=4.9e-06 Score=74.89 Aligned_cols=25 Identities=32% Similarity=0.308 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHH
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQ 126 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~ 126 (344)
..++++|++|+||||+++.|+....
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4689999999999999999996653
No 261
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=98.21 E-value=4.9e-06 Score=74.36 Aligned_cols=42 Identities=26% Similarity=0.363 Sum_probs=35.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCc
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~ 141 (344)
++.+|+++|+|||||||++..|+..+...|+.+.+++.|..+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 357899999999999999999999988888887777877543
No 262
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.16 E-value=1.5e-05 Score=75.98 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=21.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHH
Q 019214 99 GKPSVIMFVGLQGSGKTTTCTKYA 122 (344)
Q Consensus 99 ~~~~ii~ivG~~GvGKTTl~~~La 122 (344)
+-...|+++|++||||||+++.|+
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~ 52 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLF 52 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHT
T ss_pred CCCEEEEEECCCCCcHHHHHHHHh
Confidence 334568999999999999999999
No 263
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.16 E-value=2e-06 Score=72.11 Aligned_cols=37 Identities=27% Similarity=0.243 Sum_probs=32.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCccEEeec
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQ-KKGWKPALVCA 137 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~-~~g~~v~iv~~ 137 (344)
+..++++||+|+||||++..++..+. ..|..+..++.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~ 75 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDT 75 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 36799999999999999999999987 67888877765
No 264
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=98.12 E-value=3e-06 Score=70.71 Aligned_cols=40 Identities=30% Similarity=0.405 Sum_probs=36.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcC
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~ 140 (344)
.++++|+|++|+||||++.+|+..+...|++|+++..|+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 43 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence 4689999999999999999999999999999999998764
No 265
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.08 E-value=3.6e-05 Score=66.14 Aligned_cols=36 Identities=28% Similarity=0.206 Sum_probs=31.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCc
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~ 139 (344)
..+++++|+||+||||++..++. ..|.++..++.+.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEG 55 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSC
T ss_pred CEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCC
Confidence 36899999999999999999998 5588899998865
No 266
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.07 E-value=4.8e-05 Score=65.78 Aligned_cols=38 Identities=21% Similarity=0.233 Sum_probs=34.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCc
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~ 139 (344)
.+++++|++|+||||++..++..+...|.+|.+++.+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~ 61 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE 61 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence 68999999999999999999988887788999988865
No 267
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.06 E-value=1e-06 Score=83.36 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYA 122 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La 122 (344)
.+..++++|+|||||||+++.|+
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Lt 41 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAIT 41 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999999
No 268
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.01 E-value=8.9e-05 Score=69.15 Aligned_cols=39 Identities=28% Similarity=0.277 Sum_probs=35.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCc
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~ 139 (344)
..++.|+|+||+||||++..++..+...|.+|+.++...
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 478999999999999999999999998899998888753
No 269
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.97 E-value=6.2e-06 Score=81.85 Aligned_cols=29 Identities=34% Similarity=0.427 Sum_probs=24.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEE
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPAL 134 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~i 134 (344)
+..+|+|+|+|||||||++|+|+ |.++++
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~------g~~~~~ 65 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLA------GKKKGF 65 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHT------TCSSCS
T ss_pred CCcEEEEECCCCCCHHHHHHhHc------CCCCcc
Confidence 44679999999999999999999 877543
No 270
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.95 E-value=3e-05 Score=67.61 Aligned_cols=100 Identities=11% Similarity=0.045 Sum_probs=58.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeec--CcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA--DTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE 177 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~--D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 177 (344)
+..++.++|++|+||||++..++..+...|.+|.++.. |. | +. .....+.++....... ..... +.+.+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~-r-~~----~~i~srlG~~~~~~~~-~~~~~-i~~~i~ 82 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDT-R-SI----RNIQSRTGTSLPSVEV-ESAPE-ILNYIM 82 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCG-G-GC----SSCCCCCCCSSCCEEE-SSTHH-HHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCc-h-HH----HHHHHhcCCCcccccc-CCHHH-HHHHHH
Confidence 44789999999999999999999999999999999843 32 2 21 1122333432211111 11111 112222
Q ss_pred H-HHhCCCCEEEEcCCCCCcchHHHHHHHHHhh
Q 019214 178 T-FKKENCDLIIVDTSGRHKQEAALFEEMRQVS 209 (344)
Q Consensus 178 ~-~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~ 209 (344)
. .....+|+|+||-+-.... +.++.+..+.
T Consensus 83 ~~~~~~~~dvViIDEaQ~l~~--~~ve~l~~L~ 113 (223)
T 2b8t_A 83 SNSFNDETKVIGIDEVQFFDD--RICEVANILA 113 (223)
T ss_dssp STTSCTTCCEEEECSGGGSCT--HHHHHHHHHH
T ss_pred HHhhCCCCCEEEEecCccCcH--HHHHHHHHHH
Confidence 1 1123599999999876543 2444444433
No 271
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.94 E-value=2.3e-05 Score=78.46 Aligned_cols=74 Identities=22% Similarity=0.239 Sum_probs=40.2
Q ss_pred CCCEEEEcCCCCCcc-----hHHHHHHHHHhhhh-c--CCcEEEEEEcCCcc---hhHHHHHHHHhccCCcCEEEeecCC
Q 019214 183 NCDLIIVDTSGRHKQ-----EAALFEEMRQVSEA-T--NPDLVIFVMDSSIG---QAAFDQAQAFKQSVSVGAVIVTKMD 251 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~-----~~~~~~~l~~~~~~-~--~~d~illvvda~~~---~~~~~~~~~~~~~~~~~~lVinK~D 251 (344)
.++++++|.||+... +......+..+... . ....+++++++... ......+..+.......++|+||+|
T Consensus 146 ~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~D 225 (608)
T 3szr_A 146 VPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPD 225 (608)
T ss_dssp SCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGG
T ss_pred CCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchh
Confidence 468999999986432 11112223222222 1 23456667665433 3445566666544445688999999
Q ss_pred CCCCh
Q 019214 252 GHAKG 256 (344)
Q Consensus 252 ~~~~~ 256 (344)
....+
T Consensus 226 lv~~g 230 (608)
T 3szr_A 226 LVDKG 230 (608)
T ss_dssp GSSSS
T ss_pred hcCcc
Confidence 87553
No 272
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.93 E-value=0.0002 Score=63.44 Aligned_cols=41 Identities=27% Similarity=0.356 Sum_probs=32.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcc
Q 019214 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (344)
Q Consensus 99 ~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~ 142 (344)
..+.+|+++|+|||||||++..|+..+ +..+.+++.|.+|.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l---~~~~~~~~~D~~r~ 70 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEF---QGNIVIIDGDSFRS 70 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHT---TTCCEEECGGGGGT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhc---CCCcEEEecHHHHH
Confidence 356789999999999999999998655 33467788887764
No 273
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.93 E-value=7.7e-06 Score=73.24 Aligned_cols=28 Identities=29% Similarity=0.518 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEe
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALV 135 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv 135 (344)
..++++|.|||||||++|.|. |....-+
T Consensus 100 ~~v~~vG~~~vGKSslin~l~------~~~~~~~ 127 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLK------GKRASSV 127 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHH------TTCC---
T ss_pred hheEEeCCCCCCHHHHHHHHh------ccccccc
Confidence 468999999999999999999 7665433
No 274
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.92 E-value=7.2e-05 Score=65.39 Aligned_cols=39 Identities=23% Similarity=0.356 Sum_probs=35.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCc
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~ 139 (344)
+.+++++|+||+||||++..++..+...|.++..++.+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 368999999999999999999999888899999998864
No 275
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.92 E-value=2.6e-05 Score=67.00 Aligned_cols=42 Identities=26% Similarity=0.362 Sum_probs=36.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCc
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~ 141 (344)
++.+++|+|++|+||||++..|+..+...|..+..|..|.+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~ 62 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFH 62 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGB
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCc
Confidence 457999999999999999999999887667788889888654
No 276
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.90 E-value=0.00017 Score=67.60 Aligned_cols=89 Identities=18% Similarity=0.172 Sum_probs=54.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhc-ccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNA-TKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~-~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
..++.|.|+||+||||++.+++..+...|.+|+.++.+......+ ..... ...++.+.. ..+ ...+...++.+
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~--a~~~g~d~~~l~i~~---~~~-~e~~l~~l~~l 147 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVY--ARALGVNTDELLVSQ---PDN-GEQALEIMELL 147 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHH--HHHTTCCGGGCEEEC---CSS-HHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHH--HHHcCCCHHHceeec---CCc-HHHHHHHHHHH
Confidence 368899999999999999999999988899999999874211111 01100 011111111 112 22233334333
Q ss_pred H-hCCCCEEEEcCCCCC
Q 019214 180 K-KENCDLIIVDTSGRH 195 (344)
Q Consensus 180 ~-~~~~d~vlIDT~G~~ 195 (344)
. ..++++|+||..+..
T Consensus 148 ~~~~~~~lVVIDsl~~l 164 (366)
T 1xp8_A 148 VRSGAIDVVVVDSVAAL 164 (366)
T ss_dssp HTTTCCSEEEEECTTTC
T ss_pred HhcCCCCEEEEeChHHh
Confidence 2 357999999997754
No 277
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.87 E-value=4.6e-05 Score=75.76 Aligned_cols=113 Identities=19% Similarity=0.212 Sum_probs=64.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
..+++++|+||+||||++..++..+...|++|.++.. ...+.+.+..........+.... ...+ ... ......
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~Ap---T~~Aa~~L~e~~~~~a~Tih~ll-~~~~-~~~--~~~~~~ 276 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP---TGKAARRLGEVTGRTASTVHRLL-GYGP-QGF--RHNHLE 276 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES---SHHHHHHHHHHHTSCEEEHHHHT-TEET-TEE--SCSSSS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecC---cHHHHHHhHhhhcccHHHHHHHH-cCCc-chh--hhhhcc
Confidence 4688999999999999999999999999999988765 33334444321111100000000 0000 000 000000
Q ss_pred hCCCCEEEEcCCCCCcchHHHHHHHHHhhhhc-CCcEEEEEEcCCc
Q 019214 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEAT-NPDLVIFVMDSSI 225 (344)
Q Consensus 181 ~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~-~~d~illvvda~~ 225 (344)
...+|++|||-++..... .+..+ .... ....+++|-|+.+
T Consensus 277 ~~~~dvlIIDEasml~~~--~~~~L---l~~~~~~~~lilvGD~~Q 317 (574)
T 3e1s_A 277 PAPYDLLIVDEVSMMGDA--LMLSL---LAAVPPGARVLLVGDTDQ 317 (574)
T ss_dssp CCSCSEEEECCGGGCCHH--HHHHH---HTTSCTTCEEEEEECTTS
T ss_pred cccCCEEEEcCccCCCHH--HHHHH---HHhCcCCCEEEEEecccc
Confidence 126899999999987532 33232 3332 2346888888764
No 278
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.87 E-value=4.1e-05 Score=62.36 Aligned_cols=36 Identities=22% Similarity=0.281 Sum_probs=31.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeec
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~ 137 (344)
..++++|++|+||||++..++..+...|+++..++.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~ 72 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDA 72 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcH
Confidence 579999999999999999999988777877776665
No 279
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.86 E-value=0.00023 Score=64.46 Aligned_cols=39 Identities=28% Similarity=0.268 Sum_probs=33.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCccEEeecCc
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKK-GWKPALVCADT 139 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~-g~~v~iv~~D~ 139 (344)
+.+++++|+||+||||++..++..+... |.+|.+++.+.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~ 74 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE 74 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC
Confidence 3689999999999999999999998765 88898888753
No 280
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.85 E-value=0.0001 Score=62.68 Aligned_cols=95 Identities=17% Similarity=0.139 Sum_probs=56.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEee--cCcCcchhHHHHHhhcccCCccee--ccCCCCCHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC--ADTFRAGAFDQLKQNATKAKIPFY--GSYTESDPVRIAVEG 175 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~--~D~~~~~~~~~l~~~~~~~~v~~~--~~~~~~~~~~~~~~~ 175 (344)
+.++++++|+.|+||||.+..++..+..+|++|.++. .|. |.+. .....+.++... ...... +.
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~-r~~~----~~i~s~~g~~~~a~~~~~~~-------~i 74 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDN-RYSK----EDVVSHMGEKEQAVAIKNSR-------EI 74 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC------------CEEECTTSCEEECEEESSST-------HH
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCc-cchH----HHHHhhcCCceeeEeeCCHH-------HH
Confidence 3478999999999999999999999999999999986 333 2211 011222332211 111111 22
Q ss_pred HHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhh
Q 019214 176 VETFKKENCDLIIVDTSGRHKQEAALFEEMRQVS 209 (344)
Q Consensus 176 l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~ 209 (344)
+..+. ..+|+|+||.+.....+ .++.++.+.
T Consensus 75 ~~~~~-~~~dvViIDEaqfl~~~--~v~~l~~l~ 105 (191)
T 1xx6_A 75 LKYFE-EDTEVIAIDEVQFFDDE--IVEIVNKIA 105 (191)
T ss_dssp HHHCC-TTCSEEEECSGGGSCTH--HHHHHHHHH
T ss_pred HHHHh-ccCCEEEEECCCCCCHH--HHHHHHHHH
Confidence 22222 35899999998876432 344454443
No 281
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.84 E-value=1.9e-05 Score=66.15 Aligned_cols=39 Identities=26% Similarity=0.368 Sum_probs=35.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCc
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~ 139 (344)
.++++|+|++|+||||++++|+..+...|++|+++..|+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence 368999999999999999999999988899999998865
No 282
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.82 E-value=5.7e-05 Score=66.21 Aligned_cols=39 Identities=23% Similarity=0.405 Sum_probs=31.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCccEEeecCc
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQ-KKGWKPALVCADT 139 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~-~~g~~v~iv~~D~ 139 (344)
+.+++++||+|+||||++..++.... ..+..+.+++.+.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~ 69 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccC
Confidence 46899999999999999999996554 5577777776653
No 283
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.82 E-value=0.00021 Score=65.55 Aligned_cols=117 Identities=15% Similarity=0.139 Sum_probs=64.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceecc------CCCCCHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGS------YTESDPVRIAVE 174 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~------~~~~~~~~~~~~ 174 (344)
+..+.+.|+||+||||++.+++...+.+|.+|+.++..-.......++... ..+++.... ....+.. .+..
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s~~~l~~R~~~~--~~~i~~~~l~~~~~~l~~~~~~-~l~~ 144 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRLIVT--AGSINAQKIKAARRDFASEDWG-KLSM 144 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSCHHHHHHHHHHH--HTTCCHHHHHSCHHHHCSSCHH-HHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHH--HcCCCHHHHhcCCCCCCHHHHH-HHHH
Confidence 368999999999999999999999988888999999863221112222211 112221100 1111211 1222
Q ss_pred HHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCC
Q 019214 175 GVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSS 224 (344)
Q Consensus 175 ~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~ 224 (344)
+...+. ...+.+.|+++.. ...+...++.+.....++..++|+|.-
T Consensus 145 a~~~l~--~~~i~i~d~~~~~--~~~i~~~i~~l~~~~~~~~~lVVID~l 190 (315)
T 3bh0_A 145 AIGEIS--NSNINIFDKAGQS--VNYIWSKTRQTKRKNPGKRVIVMIDYL 190 (315)
T ss_dssp HHHHHH--TSCEEEECCSCCB--HHHHHHHHHHHHHTSSSCCEEEEEECG
T ss_pred HHHHHh--CCCEEEECCCCCC--HHHHHHHHHHHHHhcCCCCeEEEEeCc
Confidence 333332 3566777877743 234444444444333344337788863
No 284
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.81 E-value=0.00023 Score=68.42 Aligned_cols=117 Identities=16% Similarity=0.149 Sum_probs=67.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceec----c--CCCCCHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYG----S--YTESDPVRIAVE 174 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~----~--~~~~~~~~~~~~ 174 (344)
+..+++.|+||+||||++.+++...+.+|.+|++++..-.......++.. ...+++... . ....+.. .+..
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~~ql~~R~~~--~~~~i~~~~l~~g~~~l~~~~~~-~l~~ 273 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRLIV--TAGSINAQKIKAARRDFASEDWG-KLSM 273 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCTTHHHHHHHH--HHSCCCHHHHHHTGGGTCCSCHH-HHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHHHH--HHcCCCHHHHhcccCCCCHHHHH-HHHH
Confidence 46899999999999999999999998889999999986432222222211 112222111 0 1112221 2223
Q ss_pred HHHHHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCC
Q 019214 175 GVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSS 224 (344)
Q Consensus 175 ~l~~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~ 224 (344)
+...+. ...+.+.|+|+.. ...+...++.+.....++..++|||.-
T Consensus 274 a~~~l~--~~~l~i~d~~~~s--~~~i~~~ir~l~~~~~~~~~lIVID~L 319 (444)
T 3bgw_A 274 AIGEIS--NSNINIFDKAGQS--VNYIWSKTRQTKRKNPGKRVIVMIDYL 319 (444)
T ss_dssp HHHHHH--TSCEEEECCSSCB--HHHHHHHHHHHHHHSCSSCEEEEEECS
T ss_pred HHHHHh--cCCEEEECCCCCC--HHHHHHHHHHHHHHhCCCCeEEEEecH
Confidence 334443 4567777888753 234444454444433455447788863
No 285
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.81 E-value=5.2e-05 Score=70.84 Aligned_cols=89 Identities=19% Similarity=0.200 Sum_probs=55.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCc-CcchhHHHHHhhc-ccCCcceeccCCCCCHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT-FRAGAFDQLKQNA-TKAKIPFYGSYTESDPVRIAVEGVET 178 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~-~~~~~~~~l~~~~-~~~~v~~~~~~~~~~~~~~~~~~l~~ 178 (344)
..++.+.|+||+||||++.+++..+...|.+|+.++.+- ..+... ..+. ...++.+.. . +....+.+.++.
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a---~~~g~~~~~l~i~~---~-~~~e~~~~~~~~ 135 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYA---RKLGVDIDNLLCSQ---P-DTGEQALEICDA 135 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHH---HHTTCCGGGCEEEC---C-SSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHH---HHcCCChhheeeeC---C-CCHHHHHHHHHH
Confidence 368999999999999999999999998899999999842 111111 1111 011121111 1 122222333333
Q ss_pred H-HhCCCCEEEEcCCCCCc
Q 019214 179 F-KKENCDLIIVDTSGRHK 196 (344)
Q Consensus 179 ~-~~~~~d~vlIDT~G~~~ 196 (344)
+ +..++++|+||+.+...
T Consensus 136 l~~~~~~~lVVIDsl~~l~ 154 (356)
T 1u94_A 136 LARSGAVDVIVVDSVAALT 154 (356)
T ss_dssp HHHHTCCSEEEEECGGGCC
T ss_pred HHhccCCCEEEEcCHHHhc
Confidence 3 24589999999977654
No 286
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.78 E-value=8.5e-05 Score=69.24 Aligned_cols=39 Identities=31% Similarity=0.275 Sum_probs=35.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCc
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~ 139 (344)
..++.++|+||+||||++..++..+...|.+++.++.+.
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~ 99 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH 99 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 468999999999999999999999988899999999863
No 287
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.77 E-value=2.7e-05 Score=65.51 Aligned_cols=41 Identities=39% Similarity=0.510 Sum_probs=36.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcC
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~ 140 (344)
++.+|+++|++|+||||++..|+..+...|.++.+++.|..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 45789999999999999999999999888999988887654
No 288
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.76 E-value=7.3e-05 Score=63.84 Aligned_cols=42 Identities=24% Similarity=0.241 Sum_probs=36.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCc
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~ 141 (344)
++.+++++|++|+||||++..|+..+...|..+.+++.|.+.
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~ 62 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI 62 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCccc
Confidence 457999999999999999999999988778888888887643
No 289
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.71 E-value=0.00019 Score=66.37 Aligned_cols=39 Identities=13% Similarity=0.108 Sum_probs=35.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCc
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~ 139 (344)
...+++.|+||+||||++.+++..++..|.+|++++..-
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEm 84 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEM 84 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 358999999999999999999999998999999999864
No 290
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.70 E-value=5.3e-05 Score=68.63 Aligned_cols=62 Identities=19% Similarity=0.282 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcc
Q 019214 73 RIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (344)
Q Consensus 73 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~ 142 (344)
+.+...+...+..++.... ....+..|+++|+|||||||++..|+..+ +.....|+.|.+|.
T Consensus 10 ~~~~~~~~~~~~~~l~~~~-----~~~~~~livl~G~sGsGKSTla~~L~~~~---~~~~~~Is~D~~R~ 71 (287)
T 1gvn_B 10 KQFENRLNDNLEELIQGKK-----AVESPTAFLLGGQPGSGKTSLRSAIFEET---QGNVIVIDNDTFKQ 71 (287)
T ss_dssp HHHHHHHHHHHHHHHTTCC-----CCSSCEEEEEECCTTSCTHHHHHHHHHHT---TTCCEEECTHHHHT
T ss_pred HHHHHHHHHHHHHHhcccc-----CCCCCeEEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechHhHH
Confidence 4455667777777775422 12356889999999999999999998654 22467788887653
No 291
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.68 E-value=5.4e-05 Score=70.75 Aligned_cols=82 Identities=18% Similarity=0.184 Sum_probs=47.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCccEEeecCcCcchhHHHHHhhcccCCcceeccCC-CCCHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKK-GWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYT-ESDPVRIAVEGVET 178 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~-g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~-~~~~~~~~~~~l~~ 178 (344)
..+++|+||+|+||||+++.++..+... |..+..+. |+..... .. ....++-..... ... ..+++..
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~e-d~~e~~~----~~--~~~~v~q~~~~~~~~~----~~~~La~ 191 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIE-DPIEFVH----ES--KKCLVNQREVHRDTLG----FSEALRS 191 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEE-SSCCSCC----CC--SSSEEEEEEBTTTBSC----HHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEcc-CcHHhhh----hc--cccceeeeeeccccCC----HHHHHHH
Confidence 3589999999999999999999988765 55554443 3321100 00 000011001011 111 2235556
Q ss_pred HHhCCCCEEEEcCCC
Q 019214 179 FKKENCDLIIVDTSG 193 (344)
Q Consensus 179 ~~~~~~d~vlIDT~G 193 (344)
....++|++++|-|-
T Consensus 192 aL~~~PdvillDEp~ 206 (356)
T 3jvv_A 192 ALREDPDIILVGEMR 206 (356)
T ss_dssp HTTSCCSEEEESCCC
T ss_pred HhhhCcCEEecCCCC
Confidence 656799999999985
No 292
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.67 E-value=8e-05 Score=64.38 Aligned_cols=26 Identities=31% Similarity=0.318 Sum_probs=23.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQ 126 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~ 126 (344)
..+++++||+|+||||++..|+..+.
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 47899999999999999999997554
No 293
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.67 E-value=9.2e-05 Score=67.18 Aligned_cols=43 Identities=33% Similarity=0.272 Sum_probs=34.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcC--CccEEe-ecCcCc
Q 019214 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKG--WKPALV-CADTFR 141 (344)
Q Consensus 99 ~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g--~~v~iv-~~D~~~ 141 (344)
+++.+|+|+|++||||||++..|+..+...| .++.++ +.|.|-
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~ 74 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY 74 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence 3568999999999999999999999997654 455544 998753
No 294
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=97.64 E-value=0.00025 Score=69.55 Aligned_cols=43 Identities=30% Similarity=0.461 Sum_probs=37.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcc
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~ 142 (344)
.+.+|+++|.||+||||++.+|+..+...+.++.+++.|.+|.
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~ 76 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRR 76 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHH
Confidence 4578999999999999999999999988888888888876553
No 295
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.64 E-value=3.8e-05 Score=64.48 Aligned_cols=36 Identities=19% Similarity=0.324 Sum_probs=32.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeec
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~ 137 (344)
++|+|.|++||||||++..|+..+...|+.+..++.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~ 37 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINY 37 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEEC
Confidence 478999999999999999999999888888877764
No 296
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.62 E-value=9.6e-05 Score=64.48 Aligned_cols=39 Identities=23% Similarity=0.217 Sum_probs=30.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHH------cCCccEEeecCc
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQK------KGWKPALVCADT 139 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~------~g~~v~iv~~D~ 139 (344)
..+++++|++|+||||++..++..... .+..+..++.+.
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 368999999999999999999976432 255677777643
No 297
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.61 E-value=4.6e-05 Score=63.94 Aligned_cols=36 Identities=25% Similarity=0.330 Sum_probs=31.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeec
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~ 137 (344)
.+|+|.|++||||||++..|+..+...|.+...++.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~ 39 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSF 39 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEeh
Confidence 579999999999999999999999877866666765
No 298
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.61 E-value=6e-05 Score=69.32 Aligned_cols=43 Identities=21% Similarity=0.230 Sum_probs=36.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHH--cCCccEEeecCcCc
Q 019214 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQK--KGWKPALVCADTFR 141 (344)
Q Consensus 99 ~~~~ii~ivG~~GvGKTTl~~~La~~l~~--~g~~v~iv~~D~~~ 141 (344)
+++.+++|+|++||||||++..|+..+.. .+.++.+++.|.|.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~ 134 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL 134 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence 46689999999999999999999988764 35679999998754
No 299
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.60 E-value=0.00015 Score=62.78 Aligned_cols=37 Identities=14% Similarity=0.060 Sum_probs=33.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecC
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D 138 (344)
..+.++|+||+||||++..++..+...|.++..++++
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG 89 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 5689999999999999999999998888888888873
No 300
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.58 E-value=3.7e-05 Score=69.78 Aligned_cols=42 Identities=24% Similarity=0.438 Sum_probs=34.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCc
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~ 141 (344)
++.+|+|.|++||||||++..|+..+...|.++.+++.|.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 346899999999999999999999888778889999998754
No 301
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.57 E-value=0.00019 Score=72.47 Aligned_cols=43 Identities=30% Similarity=0.348 Sum_probs=35.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHH
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQL 148 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l 148 (344)
+..|.||||+|||+++..+...+...|.+|++++. ...|++++
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~---TN~AvD~i 249 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP---SNIAVDNL 249 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES---SHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcC---chHHHHHH
Confidence 56778999999999999999999999999988876 44444443
No 302
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=97.57 E-value=0.00041 Score=63.79 Aligned_cols=70 Identities=16% Similarity=0.170 Sum_probs=39.3
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcc-hhHHHH----HHHHhc--cCCcCEEEeecCCCCCC
Q 019214 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG-QAAFDQ----AQAFKQ--SVSVGAVIVTKMDGHAK 255 (344)
Q Consensus 183 ~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~-~~~~~~----~~~~~~--~~~~~~lVinK~D~~~~ 255 (344)
...+.|.||||......... +. -.....++.+++|+|.+.. .+.... ...... ..-+..+|.||+|+...
T Consensus 45 ~v~LqIWDTAGQErf~~~~l--~~-~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~ 121 (331)
T 3r7w_B 45 LIDLAVMELPGQLNYFEPSY--DS-ERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSE 121 (331)
T ss_dssp SSCEEEEECCSCSSSCCCSH--HH-HHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCS
T ss_pred EEEEEEEECCCchhccchhh--hh-hhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCch
Confidence 46788999999864311000 00 0113468999999998864 122221 111111 12244678999999764
No 303
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.57 E-value=0.0097 Score=57.19 Aligned_cols=39 Identities=15% Similarity=0.135 Sum_probs=34.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHH-cCCccEEeecCc
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQK-KGWKPALVCADT 139 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~-~g~~v~iv~~D~ 139 (344)
+..++++|+||+||||++.+++..++. .|.+|++++.+-
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~ 242 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM 242 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 468999999999999999999998876 688999999853
No 304
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.56 E-value=7.3e-05 Score=63.68 Aligned_cols=41 Identities=32% Similarity=0.340 Sum_probs=33.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcC
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~ 140 (344)
++.+|+++|++|+||||++..|+..+...|..+..++.|..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 45789999999999999999999998866765556676543
No 305
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.56 E-value=0.00011 Score=70.40 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYH 125 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l 125 (344)
+..+|+|+|++++|||||+|.|...+
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~~ 91 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYM 91 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhhc
Confidence 45789999999999999999999765
No 306
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.56 E-value=8.2e-05 Score=63.60 Aligned_cols=37 Identities=27% Similarity=0.384 Sum_probs=31.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCC--ccEEeecCcC
Q 019214 98 KGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGW--KPALVCADTF 140 (344)
Q Consensus 98 ~~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~--~v~iv~~D~~ 140 (344)
-.++.+|+++|++|+||||++..|+ +. .+.+++.|.+
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~------~~~~~~~~i~~D~~ 56 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQ------KHLPNCSVISQDDF 56 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHH------TTSTTEEEEEGGGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH------HhcCCcEEEeCCcc
Confidence 3456899999999999999999999 64 6889999875
No 307
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.54 E-value=7.8e-05 Score=63.86 Aligned_cols=38 Identities=37% Similarity=0.381 Sum_probs=31.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcC
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~ 140 (344)
++.+++++|++|+||||++..|+..+.. ++.+++.|++
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~ 42 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLGE---RVALLPMDHY 42 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGGC
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCcc
Confidence 4578999999999999999999965532 4888998864
No 308
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.52 E-value=0.0019 Score=56.22 Aligned_cols=34 Identities=29% Similarity=0.357 Sum_probs=29.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEE
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPAL 134 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~i 134 (344)
++..|+|.|++||||||++..|+..+.. |..+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~ 58 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 58 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence 4578999999999999999999999977 776643
No 309
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.50 E-value=0.0004 Score=62.97 Aligned_cols=35 Identities=26% Similarity=0.422 Sum_probs=29.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeec
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~ 137 (344)
.++.+.+.||||+|||+++..+|..+ |..+..+++
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~~ 69 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM---GINPIMMSA 69 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH---TCCCEEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeH
Confidence 45678888999999999999999877 667766665
No 310
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.47 E-value=0.00093 Score=59.87 Aligned_cols=38 Identities=18% Similarity=0.071 Sum_probs=30.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc----------CCccEEeecC
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKK----------GWKPALVCAD 138 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~----------g~~v~iv~~D 138 (344)
..+++++|++|+||||++..++..+... +.+++.++..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e 77 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAE 77 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECC
Confidence 4689999999999999999999876642 3567666654
No 311
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.46 E-value=7.6e-05 Score=68.31 Aligned_cols=36 Identities=25% Similarity=0.210 Sum_probs=32.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHH-HcCCccEEeec
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQ-KKGWKPALVCA 137 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~-~~g~~v~iv~~ 137 (344)
..+.+.||||+|||+++.+++..+. ..|++|..++.
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHF 189 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEH
Confidence 5689999999999999999999999 88999888776
No 312
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.46 E-value=0.00012 Score=68.75 Aligned_cols=38 Identities=26% Similarity=0.380 Sum_probs=30.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCccEEeec
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKK-GWKPALVCA 137 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~-g~~v~iv~~ 137 (344)
+..+++++||+|+||||+++.|+..+... ..+|.++..
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~ 173 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED 173 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEES
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecc
Confidence 44789999999999999999999988765 455655553
No 313
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.45 E-value=7.4e-05 Score=68.57 Aligned_cols=37 Identities=27% Similarity=0.382 Sum_probs=32.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecC
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D 138 (344)
..+.+.||||+||||++..++..+...|.++..++++
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 4589999999999999999999998878888877763
No 314
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.45 E-value=0.00026 Score=65.13 Aligned_cols=39 Identities=26% Similarity=0.336 Sum_probs=32.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc------CCccEEeecCc
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKK------GWKPALVCADT 139 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~------g~~v~iv~~D~ 139 (344)
..++.++|+||+||||++..++...... |.+|+.++.+-
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 4689999999999999999999876544 67888888753
No 315
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=97.44 E-value=0.00063 Score=59.35 Aligned_cols=36 Identities=28% Similarity=0.452 Sum_probs=28.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc----CCccEEe
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKK----GWKPALV 135 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~----g~~v~iv 135 (344)
++..|+|.|++||||||.+..|+..+... |++|.+.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~ 63 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT 63 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence 44789999999999999999999999887 9888543
No 316
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.44 E-value=0.00013 Score=66.79 Aligned_cols=42 Identities=24% Similarity=0.302 Sum_probs=34.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH--HcCCccEEeecCcCc
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQ--KKGWKPALVCADTFR 141 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~--~~g~~v~iv~~D~~~ 141 (344)
++.+++|+|++|+||||++..|+..+. ..+.++.+++.|-+.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL 122 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc
Confidence 457999999999999999999998776 345578888887543
No 317
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.43 E-value=0.00037 Score=64.70 Aligned_cols=39 Identities=18% Similarity=0.125 Sum_probs=32.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHH------cCCccEEeecCc
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQK------KGWKPALVCADT 139 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~------~g~~v~iv~~D~ 139 (344)
..++.|+|+||+||||++..++..... .|.+++.++.+.
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 478999999999999999999987543 467888888753
No 318
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.43 E-value=0.0001 Score=65.26 Aligned_cols=42 Identities=26% Similarity=0.469 Sum_probs=34.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHH-----cCCccEEeecCcC
Q 019214 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQK-----KGWKPALVCADTF 140 (344)
Q Consensus 99 ~~~~ii~ivG~~GvGKTTl~~~La~~l~~-----~g~~v~iv~~D~~ 140 (344)
.++.+|+|+|++||||||++..|+..+.. .++++.+++.|-+
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~ 66 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSF 66 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcc
Confidence 35678999999999999999999987643 2567888998864
No 319
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.43 E-value=7.1e-05 Score=62.47 Aligned_cols=38 Identities=29% Similarity=0.378 Sum_probs=32.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCc
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~ 139 (344)
++++|+|++|+||||++..|+..+...|+++..|..|.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg 40 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHA 40 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcC
Confidence 57999999999999999999999998888888777664
No 320
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.43 E-value=0.00015 Score=66.49 Aligned_cols=42 Identities=26% Similarity=0.237 Sum_probs=35.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHc-C-CccEEeecCcC
Q 019214 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKK-G-WKPALVCADTF 140 (344)
Q Consensus 99 ~~~~ii~ivG~~GvGKTTl~~~La~~l~~~-g-~~v~iv~~D~~ 140 (344)
.++.+++|+|++||||||++..|+..+... | .++++|..|.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~ 131 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF 131 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence 355899999999999999999999888653 4 57899998865
No 321
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=97.42 E-value=0.0018 Score=67.13 Aligned_cols=36 Identities=17% Similarity=0.016 Sum_probs=31.7
Q ss_pred CeEEEEEcCC-CCCHHHHHHHHHHHHHHc-----CCccEEee
Q 019214 101 PSVIMFVGLQ-GSGKTTTCTKYAYYHQKK-----GWKPALVC 136 (344)
Q Consensus 101 ~~ii~ivG~~-GvGKTTl~~~La~~l~~~-----g~~v~iv~ 136 (344)
.+.+.|.|.. |||||+++..|+..+.++ |++|+..-
T Consensus 34 ~~~l~I~gt~s~vGKT~vt~gL~r~l~~~~~~~~G~~V~~fK 75 (831)
T 4a0g_A 34 HPTYLIWSANTSLGKTLVSTGIAASFLLQQPSSSATKLLYLK 75 (831)
T ss_dssp SCEEEEEESSSSSCHHHHHHHHHHHHHSCSSCCTTCEEEEEE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHHHhcccccCCceEEEEc
Confidence 3578888985 999999999999999998 99998765
No 322
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.42 E-value=0.0021 Score=61.69 Aligned_cols=38 Identities=16% Similarity=0.107 Sum_probs=34.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHH-cCCccEEeecC
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQK-KGWKPALVCAD 138 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~-~g~~v~iv~~D 138 (344)
+..+.++|+||+||||++.+++...+. .|.+|+.++..
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 468999999999999999999999886 58899999885
No 323
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.41 E-value=0.00059 Score=64.65 Aligned_cols=38 Identities=21% Similarity=0.187 Sum_probs=29.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHH------cCCccEEeecC
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQK------KGWKPALVCAD 138 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~------~g~~v~iv~~D 138 (344)
..++.|+|+||+||||++..++..... .+.++..++..
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence 468999999999999999988755432 24567777664
No 324
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.41 E-value=0.00015 Score=60.40 Aligned_cols=40 Identities=25% Similarity=0.327 Sum_probs=33.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCc
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~ 139 (344)
++.+|+++|++|+||||++..|+..+...|..+..++.|.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 3478999999999999999999998877787776666543
No 325
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.40 E-value=0.00011 Score=63.19 Aligned_cols=42 Identities=21% Similarity=0.244 Sum_probs=35.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCccEEeecCcCc
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQ-KKGWKPALVCADTFR 141 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~-~~g~~v~iv~~D~~~ 141 (344)
++.+|+++|++|+||||++..|+..+. ..|.++..++.|..+
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r 66 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 66 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh
Confidence 347899999999999999999999997 678888888765543
No 326
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.38 E-value=0.0031 Score=55.37 Aligned_cols=35 Identities=20% Similarity=0.167 Sum_probs=27.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeec
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~ 137 (344)
.++-+.++||||+||||++..++..+ +.....+++
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~---~~~~~~~~~ 72 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA---QVPFLAMAG 72 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH---TCCEEEEET
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEech
Confidence 34568899999999999999999765 455555555
No 327
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.38 E-value=0.0002 Score=61.24 Aligned_cols=36 Identities=22% Similarity=0.378 Sum_probs=31.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEe
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALV 135 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv 135 (344)
++.+|+|+|++||||||++..|+..+...|..+..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~ 43 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL 43 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 357899999999999999999999998888887444
No 328
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.37 E-value=0.0011 Score=63.26 Aligned_cols=36 Identities=31% Similarity=0.396 Sum_probs=28.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcC
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~ 140 (344)
.+.+|+++|+|||||||++..|+..+ ...+++.|..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~ 292 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA-----GYVHVNRDTL 292 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG-----TCEECCGGGS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc-----CcEEEccchH
Confidence 46789999999999999999998432 4566777665
No 329
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=97.36 E-value=0.0035 Score=57.91 Aligned_cols=159 Identities=13% Similarity=0.213 Sum_probs=89.6
Q ss_pred CeEEEEEcCC-CCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHH-HHHHHHHHH
Q 019214 101 PSVIMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPV-RIAVEGVET 178 (344)
Q Consensus 101 ~~ii~ivG~~-GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~-~~~~~~l~~ 178 (344)
.+.+.++|.- .+||||++..|...+.++|.++..+.... ..+ +. ...+++.-. ...+.. .........
T Consensus 152 ~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a~~~~tgq---tg~--~~---~~~gi~~Da--v~~df~aG~ve~~~~~ 221 (349)
T 2obn_A 152 CRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLATGQ---TGV--ML---EGDGVALDA--VRVDFAAGAVEQMVMR 221 (349)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEECCSH---HHH--HH---HSCSCCGGG--SBHHHHHHHHHHHHHH
T ss_pred ceEEEEcCCCccccceeHHHHHHHHHHhcCCcEEEEeccc---hhh--hh---hcCCcchhH--HHHHHHhhhHHHHHHH
Confidence 5778999987 99999999999999999999998866411 000 11 112222111 001111 112222222
Q ss_pred HHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCcch-------------hHHHHHHHHh------cc
Q 019214 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ-------------AAFDQAQAFK------QS 239 (344)
Q Consensus 179 ~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~~~-------------~~~~~~~~~~------~~ 239 (344)
+ .+++|+++|...|-...+..- ....+.....++.++++.++..+. ........+. ..
T Consensus 222 ~-~~~~d~vlVEGqGgl~~P~~~--~t~~ll~g~~p~~vILv~~~~~g~i~~~~~~~~p~l~~~i~t~e~l~~~~~~~~~ 298 (349)
T 2obn_A 222 Y-GKNYDILHIEGQGSLLHPGST--ATLPLIRGSQPTQLVLVHRAGQTHNGNNPHVPIPPLPEVIRLYETVASGGGAFGT 298 (349)
T ss_dssp H-TTTCSEEEECCCCCTTSTTCC--THHHHHHHHCCSEEEEEEETTCCBCSSCTTSBCCCHHHHHHHHHHHHHTTTTSCC
T ss_pred h-ccCCCEEEEeCCCcccCcChH--hHHHHHHHcCCCeEEEEECCCCceECCCCccCCCCHHHHHHHHHHHHHhhccCCC
Confidence 2 347999999998743221111 122445556789999999986531 1223333331 34
Q ss_pred CCcCEEEeecCCCCCCh-hhHH-HHHHHhCCCeEE
Q 019214 240 VSVGAVIVTKMDGHAKG-GGAL-SAVAATKSPVIF 272 (344)
Q Consensus 240 ~~~~~lVinK~D~~~~~-~~~~-~~~~~~~~pv~~ 272 (344)
.++.++++|..+..... .... .....+++|+..
T Consensus 299 ~~V~Gi~lN~~~~~~~~~~~~~~~ie~~~glPv~d 333 (349)
T 2obn_A 299 VPVVGIALNTAHLDEYAAKEAIAHTIAETGLPCTD 333 (349)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHHCSCEEC
T ss_pred CcEEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEE
Confidence 57889999998765332 1222 333446666553
No 330
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.35 E-value=0.00087 Score=61.36 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=28.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeec
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~ 137 (344)
.++.+.|+||+||||++..++.. .|.++..++.
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~ 156 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA---LGGKDKYATV 156 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEe
Confidence 56789999999999999999876 5777777776
No 331
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.35 E-value=0.0021 Score=58.03 Aligned_cols=30 Identities=33% Similarity=0.463 Sum_probs=26.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGW 130 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~ 130 (344)
+..+.|+||||+|||+++..++..+...+.
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l~~~~~ 96 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLLHRLGY 96 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 356999999999999999999999877554
No 332
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.35 E-value=0.0039 Score=59.74 Aligned_cols=69 Identities=20% Similarity=0.182 Sum_probs=42.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
.++-|.+.||||+|||+++.++|..+ |.....++.. .. .. .........++..+...
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~---~~~fi~vs~s-----------~L--------~s-k~vGesek~ir~lF~~A 298 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRT---DATFIRVIGS-----------EL--------VQ-KYVGEGARMVRELFEMA 298 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHH---TCEEEEEEGG-----------GG--------CC-CSSSHHHHHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhcc---CCCeEEEEhH-----------Hh--------hc-ccCCHHHHHHHHHHHHH
Confidence 45679999999999999999999765 4444444441 00 01 11112233444555555
Q ss_pred HhCCCCEEEEcC
Q 019214 180 KKENCDLIIVDT 191 (344)
Q Consensus 180 ~~~~~d~vlIDT 191 (344)
+...+-++|||-
T Consensus 299 r~~aP~IIfiDE 310 (467)
T 4b4t_H 299 RTKKACIIFFDE 310 (467)
T ss_dssp HHTCSEEEEEEC
T ss_pred HhcCCceEeecc
Confidence 556677888874
No 333
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.34 E-value=0.00026 Score=67.67 Aligned_cols=35 Identities=23% Similarity=0.197 Sum_probs=27.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeec
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~ 137 (344)
.++-|.+.||||+|||+++.++|..+ |.....++.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~---~~~f~~v~~ 248 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQT---NATFLKLAA 248 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEG
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHh---CCCEEEEeh
Confidence 45679999999999999999999765 555555554
No 334
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.34 E-value=0.00028 Score=67.36 Aligned_cols=35 Identities=23% Similarity=0.197 Sum_probs=27.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeec
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~ 137 (344)
.++-+.+.||||+|||+++.++|..+ |.....+++
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~---~~~~~~v~~ 239 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANST---KAAFIRVNG 239 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHH---TCEEEEEEG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEec
Confidence 44669999999999999999999766 555555554
No 335
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.32 E-value=0.0002 Score=60.82 Aligned_cols=36 Identities=22% Similarity=0.178 Sum_probs=32.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeec
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~ 137 (344)
..+.+.|++|+||||++..++..+...|.++..+++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~ 90 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYV 90 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEh
Confidence 568999999999999999999999888888887776
No 336
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.31 E-value=0.00052 Score=62.66 Aligned_cols=36 Identities=8% Similarity=-0.011 Sum_probs=31.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHc--CCccEEeecC
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKK--GWKPALVCAD 138 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~--g~~v~iv~~D 138 (344)
++.+.|+||+||||++..++..+.+. |.+++.||..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E 67 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSE 67 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecc
Confidence 68899999999999999999988876 7888888874
No 337
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.31 E-value=0.00031 Score=67.15 Aligned_cols=35 Identities=26% Similarity=0.261 Sum_probs=27.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeec
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~ 137 (344)
.++-+.+.||||+|||+++.++|..+ |.....+++
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~---~~~~~~v~~ 248 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATI---GANFIFSPA 248 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEG
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEeh
Confidence 45679999999999999999999765 555555554
No 338
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.30 E-value=0.00024 Score=59.85 Aligned_cols=34 Identities=41% Similarity=0.553 Sum_probs=28.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEee
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC 136 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~ 136 (344)
.|++.|++||||||++..|+..+...|..+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 5899999999999999999999988888875443
No 339
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.30 E-value=0.00024 Score=60.61 Aligned_cols=37 Identities=27% Similarity=0.359 Sum_probs=31.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEee
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC 136 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~ 136 (344)
++.+|+++|++||||||++..|+..+...+.++.++.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 45 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLY 45 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 3478999999999999999999999987787774433
No 340
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=97.30 E-value=0.0024 Score=62.34 Aligned_cols=39 Identities=23% Similarity=0.145 Sum_probs=35.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCccEEeecCc
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKK-GWKPALVCADT 139 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~-g~~v~iv~~D~ 139 (344)
..++.|.|+||+||||++..++..++.. |.+|+.++.+-
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~ 281 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEE 281 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSS
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccC
Confidence 4689999999999999999999999876 99999999854
No 341
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.30 E-value=0.00024 Score=59.87 Aligned_cols=36 Identities=22% Similarity=0.131 Sum_probs=32.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeec
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~ 137 (344)
.+++++|++|+||||++..++..+...|+++.++..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~ 39 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKP 39 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEee
Confidence 578999999999999999999998888999988754
No 342
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.29 E-value=9.1e-05 Score=61.44 Aligned_cols=37 Identities=24% Similarity=0.328 Sum_probs=28.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCc
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~ 141 (344)
+.+|+++|+|||||||++..|+.. .....+++.|.+|
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~----~~~~~~i~~d~~r 38 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAK----NPGFYNINRDDYR 38 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH----STTEEEECHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhh----cCCcEEecHHHHH
Confidence 367999999999999999999852 2345567766544
No 343
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.28 E-value=0.00076 Score=57.20 Aligned_cols=33 Identities=27% Similarity=0.511 Sum_probs=26.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCccEEee
Q 019214 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC 136 (344)
Q Consensus 104 i~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~ 136 (344)
+.++|++|+||||++..++..+...+..+..+.
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~ 73 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIE 73 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHhccccccceEE
Confidence 899999999999999999988866555544443
No 344
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.28 E-value=0.00025 Score=60.42 Aligned_cols=31 Identities=29% Similarity=0.427 Sum_probs=27.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcc
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKP 132 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v 132 (344)
+.+|+|.|++||||||++..|+..+...| ++
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~ 34 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELKR-DV 34 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTTS-CE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhcC-CE
Confidence 46899999999999999999999887666 54
No 345
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.27 E-value=6.5e-05 Score=64.35 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=31.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecC
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D 138 (344)
+|+|+|++||||||++..|+..+...|.++.++..+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~~ 37 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFP 37 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEESS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeec
Confidence 689999999999999999999998778888777653
No 346
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.27 E-value=0.00017 Score=60.32 Aligned_cols=25 Identities=16% Similarity=0.359 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYH 125 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l 125 (344)
+++++++||+||||||+++.|+..+
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999999654
No 347
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.27 E-value=0.0016 Score=62.80 Aligned_cols=35 Identities=20% Similarity=0.101 Sum_probs=30.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCC-ccEEeec
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGW-KPALVCA 137 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~-~v~iv~~ 137 (344)
.+.|.|++|+||||++..++..+...|. +|.+++.
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~ 82 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAAP 82 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecC
Confidence 6899999999999999999999998887 5666654
No 348
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.26 E-value=0.00023 Score=61.68 Aligned_cols=27 Identities=41% Similarity=0.591 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q 019214 99 GKPSVIMFVGLQGSGKTTTCTKYAYYH 125 (344)
Q Consensus 99 ~~~~ii~ivG~~GvGKTTl~~~La~~l 125 (344)
.++++|+++|||||||||.+..|+..+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 466899999999999999999999755
No 349
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.26 E-value=0.0017 Score=56.59 Aligned_cols=39 Identities=23% Similarity=0.422 Sum_probs=32.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH-HHcCCccEEeecCc
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYH-QKKGWKPALVCADT 139 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l-~~~g~~v~iv~~D~ 139 (344)
+.++.+.|+||+|||+++..++... .+.|.++..++.+-
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~ 69 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccC
Confidence 4689999999999999999998764 45688899988863
No 350
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.25 E-value=0.00015 Score=61.05 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHH
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQ 126 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~ 126 (344)
++++++||+||||||++..|+..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5799999999999999999997664
No 351
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.25 E-value=0.00052 Score=62.62 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=28.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCc
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~ 139 (344)
+++|+|+||+||||||++..|+.. ....+|++|.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~-----~~~~iis~Ds 36 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR-----LNGEVISGDS 36 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT-----TTEEEEECCG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh-----CccceeecCc
Confidence 468999999999999999999953 3457899986
No 352
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.00053 Score=65.11 Aligned_cols=35 Identities=20% Similarity=0.237 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeec
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~ 137 (344)
.++-|.+.||||+|||+++.++|..+ |.....++.
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~---~~~fi~v~~ 249 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQT---SATFLRIVG 249 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHH---TCEEEEEES
T ss_pred CCCCCceECCCCchHHHHHHHHHHHh---CCCEEEEEH
Confidence 34669999999999999999999765 444444444
No 353
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.25 E-value=0.00028 Score=62.11 Aligned_cols=41 Identities=29% Similarity=0.427 Sum_probs=31.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-----CCccEEeecCcC
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKK-----GWKPALVCADTF 140 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~-----g~~v~iv~~D~~ 140 (344)
++.+|+++|++|+||||++..|+..+... +.++.+++.|.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~ 69 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRF 69 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcC
Confidence 45799999999999999999999876321 245677887753
No 354
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.24 E-value=0.00023 Score=60.48 Aligned_cols=37 Identities=27% Similarity=0.438 Sum_probs=29.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCc
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~ 141 (344)
.+++|+++|++||||||++..|+..+ | ..+++.|...
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~l---g--~~~i~~d~~~ 53 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEAC---G--YPFIEGDALH 53 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHH---T--CCEEEGGGGC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh---C--CEEEeCCcCc
Confidence 34689999999999999999999766 3 4567777654
No 355
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.23 E-value=0.00019 Score=61.14 Aligned_cols=32 Identities=34% Similarity=0.405 Sum_probs=26.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCc
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~ 139 (344)
.+|+++|++||||||++..|+ +....+++.|.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La------~lg~~~id~d~ 34 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFT------DLGVPLVDADV 34 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHH------TTTCCEEEHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH------HCCCcccchHH
Confidence 579999999999999999998 44455677764
No 356
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.23 E-value=0.00036 Score=62.24 Aligned_cols=37 Identities=24% Similarity=0.362 Sum_probs=29.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCccEEeec
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKK-GWKPALVCA 137 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~-g~~v~iv~~ 137 (344)
..+++++||+|+||||+++.|+..+... ..++.+...
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~ 62 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED 62 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCC
Confidence 3689999999999999999999988654 445655443
No 357
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.22 E-value=0.00034 Score=58.60 Aligned_cols=31 Identities=42% Similarity=0.665 Sum_probs=27.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCccE
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPA 133 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~ 133 (344)
+|+++|++||||||++..|+..+...|..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i 32 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVS 32 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 6899999999999999999998877777654
No 358
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.21 E-value=0.00041 Score=57.42 Aligned_cols=37 Identities=22% Similarity=0.382 Sum_probs=29.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCc
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~ 141 (344)
.+.+++++|++|+||||++..|+..+ | ...++.|...
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~---g--~~~i~~d~~~ 43 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL---H--AAFLDGDFLH 43 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH---T--CEEEEGGGGC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh---C--cEEEeCcccc
Confidence 34789999999999999999998655 3 4567776544
No 359
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.21 E-value=0.00032 Score=59.60 Aligned_cols=37 Identities=32% Similarity=0.439 Sum_probs=29.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCc
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~ 141 (344)
++.+++++|++|+||||++..|+..+ | ...++.|...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~---g--~~~i~~d~~~ 64 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET---G--LEFAEADAFH 64 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH---C--CEEEEGGGGS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh---C--CeEEcccccc
Confidence 34789999999999999999999766 4 3456666543
No 360
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.20 E-value=0.0018 Score=54.93 Aligned_cols=37 Identities=24% Similarity=0.159 Sum_probs=32.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCc
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~ 139 (344)
.|.+.+.+|.||||.+..++.....+|++|.++....
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~K 66 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIK 66 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeC
Confidence 4666677789999999999999999999999997654
No 361
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.19 E-value=0.00078 Score=63.58 Aligned_cols=68 Identities=19% Similarity=0.169 Sum_probs=42.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 180 (344)
++-+.+.||||+|||+++.++|..+ |.....++.. .. .. ....+....++..+...+
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~---~~~f~~v~~s-----------~l--------~s-k~vGese~~vr~lF~~Ar 238 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHT---DCKFIRVSGA-----------EL--------VQ-KYIGEGSRMVRELFVMAR 238 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHH---TCEEEEEEGG-----------GG--------SC-SSTTHHHHHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhh---CCCceEEEhH-----------Hh--------hc-cccchHHHHHHHHHHHHH
Confidence 4559999999999999999999665 4444444441 00 01 111223344555566666
Q ss_pred hCCCCEEEEcC
Q 019214 181 KENCDLIIVDT 191 (344)
Q Consensus 181 ~~~~d~vlIDT 191 (344)
...+-++|||-
T Consensus 239 ~~aP~IIFiDE 249 (405)
T 4b4t_J 239 EHAPSIIFMDE 249 (405)
T ss_dssp HTCSEEEEEES
T ss_pred HhCCceEeeec
Confidence 66777888874
No 362
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.19 E-value=0.00019 Score=61.16 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHH
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQ 126 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~ 126 (344)
++++|+||+|+||||+++.|+..+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5799999999999999999997653
No 363
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.17 E-value=0.00026 Score=59.43 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYA 122 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La 122 (344)
++.+++++|++|+||||++..|+
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La 30 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALA 30 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34789999999999999999998
No 364
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.16 E-value=0.00058 Score=58.78 Aligned_cols=38 Identities=13% Similarity=0.004 Sum_probs=34.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeec
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~ 137 (344)
+..+.+++|+.|+||||.+..++..+...|++|.++..
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~ 64 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKP 64 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 45788899999999999999999999999999999864
No 365
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.15 E-value=0.00031 Score=58.88 Aligned_cols=37 Identities=30% Similarity=0.457 Sum_probs=28.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCc
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~ 141 (344)
++.+|+++|+|||||||++..|+..+ |. .+++.|..+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l---~~--~~i~~D~~~ 40 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL---RL--PLLSKDAFK 40 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH---TC--CEEEHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc---CC--eEecHHHHH
Confidence 45789999999999999999999766 43 346665543
No 366
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.14 E-value=0.00027 Score=58.01 Aligned_cols=35 Identities=17% Similarity=0.221 Sum_probs=27.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCc
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~ 141 (344)
.+|+++|++||||||++..|+..+ | ..+++.|.+.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l---~--~~~i~~d~~~ 36 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL---K--YPIIKGSSFE 36 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH---C--CCEEECCCHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh---C--CeeecCcccc
Confidence 468999999999999999999655 3 4467777643
No 367
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.13 E-value=0.0003 Score=59.69 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYH 125 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l 125 (344)
+.+++++||+||||||++..|+..+
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3689999999999999999999653
No 368
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.12 E-value=0.00027 Score=60.57 Aligned_cols=26 Identities=23% Similarity=0.215 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYH 125 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l 125 (344)
++.+++++||+||||||++..|+..+
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34789999999999999999999544
No 369
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.11 E-value=0.00022 Score=59.84 Aligned_cols=35 Identities=23% Similarity=0.121 Sum_probs=26.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecC
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D 138 (344)
++.+|+++|++||||||++..|+..+ ....+++.|
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l----~g~~~id~d 43 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAEL----DGFQHLEVG 43 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHS----TTEEEEEHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc----CCCEEeeHH
Confidence 34689999999999999999999541 134566765
No 370
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.10 E-value=0.002 Score=59.95 Aligned_cols=37 Identities=27% Similarity=0.256 Sum_probs=30.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc--------CCccEEeec
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKK--------GWKPALVCA 137 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~--------g~~v~iv~~ 137 (344)
+..+.+.||+|+||||++..++..+... +..+..+++
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~ 89 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC 89 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEEC
Confidence 4579999999999999999999988664 666666665
No 371
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.10 E-value=0.0016 Score=60.42 Aligned_cols=37 Identities=30% Similarity=0.417 Sum_probs=30.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc---CCccEEeec
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKK---GWKPALVCA 137 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~---g~~v~iv~~ 137 (344)
+..++|+|++|+||||++..++..+... +..+..+++
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~ 84 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINT 84 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEC
Confidence 4579999999999999999999888665 556666665
No 372
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.10 E-value=0.00026 Score=58.73 Aligned_cols=35 Identities=14% Similarity=0.037 Sum_probs=26.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCc
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~ 139 (344)
++|+++|++||||||++..|+..+ +.....++.|.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l---~~~~~~~~~D~ 38 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL---PEPWLAFGVDS 38 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS---SSCEEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc---CCCeEEeccch
Confidence 579999999999999999999655 33334445554
No 373
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.09 E-value=0.00026 Score=59.88 Aligned_cols=35 Identities=26% Similarity=0.338 Sum_probs=28.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCc
Q 019214 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (344)
Q Consensus 99 ~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~ 139 (344)
.++.+|+++|++||||||++..|+.. ...+++.|.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~------g~~~id~d~ 40 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW------GYPVLDLDA 40 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT------TCCEEEHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC------CCEEEcccH
Confidence 35689999999999999999999853 355677775
No 374
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=97.09 E-value=0.00096 Score=58.51 Aligned_cols=40 Identities=23% Similarity=0.309 Sum_probs=33.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCc
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~ 139 (344)
++..|+|.|++||||||.+..|+..+...|.++.+....|
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep 65 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREP 65 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCC
Confidence 3478999999999999999999999999999855555544
No 375
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.09 E-value=0.00024 Score=58.58 Aligned_cols=32 Identities=28% Similarity=0.325 Sum_probs=25.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecC
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D 138 (344)
.+|+++|++||||||++..|+..+ ....++.|
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l-----~~~~id~d 36 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL-----NMEFYDSD 36 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT-----TCEEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh-----CCCEEecc
Confidence 579999999999999999999543 34556654
No 376
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.09 E-value=0.00033 Score=58.72 Aligned_cols=24 Identities=33% Similarity=0.332 Sum_probs=21.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQ 126 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~ 126 (344)
.++++||+|+||||++..|+..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999997773
No 377
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.08 E-value=0.00025 Score=60.34 Aligned_cols=32 Identities=25% Similarity=0.289 Sum_probs=26.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCc
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~ 139 (344)
++|+++|++||||||++..|+. ..+.+++.|.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~------~g~~~i~~d~ 33 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE------LGAYVLDADK 33 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH------TTCEEEEHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH------CCCEEEEccH
Confidence 4699999999999999999994 3466777764
No 378
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.08 E-value=0.0013 Score=60.47 Aligned_cols=26 Identities=23% Similarity=0.210 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYH 125 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l 125 (344)
+++-+.+.||||+|||+++.+++..+
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc
Confidence 34679999999999999999999765
No 379
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=97.08 E-value=0.00096 Score=57.99 Aligned_cols=42 Identities=29% Similarity=0.362 Sum_probs=35.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHH-cCCccEEeecCcC
Q 019214 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQK-KGWKPALVCADTF 140 (344)
Q Consensus 99 ~~~~ii~ivG~~GvGKTTl~~~La~~l~~-~g~~v~iv~~D~~ 140 (344)
.++..|+|.|++|+||||++..|+..+.. .|++|.+++..|.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~ 61 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPG 61 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCC
Confidence 35688999999999999999999999988 8999887555443
No 380
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.08 E-value=0.0011 Score=60.32 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=29.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCc
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~ 139 (344)
.+++|+|+||+||||||++..|+.. ....+|+.|.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~-----~~~~iis~Ds 43 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKI-----LPVELISVDS 43 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH-----SCEEEEECCT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh-----CCCcEEeccc
Confidence 3578999999999999999999964 3456888886
No 381
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.07 E-value=0.00028 Score=59.76 Aligned_cols=34 Identities=29% Similarity=0.357 Sum_probs=26.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEee
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC 136 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~ 136 (344)
+..|+|+|++||||||++..|+..+ .|.++..++
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l--~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI--PANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS--CGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH--CCCceEEEe
Confidence 4689999999999999999999766 245554444
No 382
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.07 E-value=0.00024 Score=60.64 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYH 125 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l 125 (344)
++++|+++|++||||||+++.|+..+
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34689999999999999999999765
No 383
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.07 E-value=0.0012 Score=58.94 Aligned_cols=34 Identities=26% Similarity=0.243 Sum_probs=25.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeec
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~ 137 (344)
+.-+.+.||||+||||++..++..+ +..+..+++
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~~---~~~~~~v~~ 84 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATET---NATFIRVVG 84 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHHT---TCEEEEEEG
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEeh
Confidence 3568999999999999999998654 444444443
No 384
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.07 E-value=0.00038 Score=59.13 Aligned_cols=35 Identities=26% Similarity=0.268 Sum_probs=27.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCc
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~ 139 (344)
++++|+++|++||||||++..|+..+ |. ..++.|.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l---~~--~~i~~d~ 58 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL---NV--PFIDLDW 58 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH---TC--CEEEHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc---CC--CEEcchH
Confidence 44689999999999999999999766 33 3456553
No 385
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.06 E-value=0.0011 Score=61.69 Aligned_cols=38 Identities=21% Similarity=0.156 Sum_probs=29.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH---c---CCccEEeec
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQK---K---GWKPALVCA 137 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~---~---g~~v~iv~~ 137 (344)
+..++.++|++|+||||++..++..+.. . |.+|..++.
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~ 173 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT 173 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeC
Confidence 3479999999999999999999987642 2 246566665
No 386
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.06 E-value=0.00037 Score=59.41 Aligned_cols=26 Identities=12% Similarity=0.289 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYH 125 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l 125 (344)
++++++++||+||||||+++.|+..+
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999999654
No 387
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=97.05 E-value=0.00064 Score=58.68 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=31.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEee
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC 136 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~ 136 (344)
+..|+|.|++|+||||.+..|+..+...|++|....
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 478999999999999999999999998899885443
No 388
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.05 E-value=0.00041 Score=58.09 Aligned_cols=33 Identities=30% Similarity=0.508 Sum_probs=26.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecC
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D 138 (344)
+.+|+++|+|||||||++..|+..+ | ..+++.|
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~---~--~~~i~~d 35 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY---G--YTHLSAG 35 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh---C--CeEEeHH
Confidence 4789999999999999999998665 3 3456654
No 389
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.05 E-value=0.0027 Score=55.92 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYH 125 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l 125 (344)
+-++++||||+||||++..++..+
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHc
Confidence 458999999999999999999765
No 390
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.04 E-value=0.0051 Score=53.48 Aligned_cols=126 Identities=19% Similarity=0.269 Sum_probs=63.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH-HHHcCC--ccEEeecCcCcchhHHHHHhhcccCCcc----e------eccC--CCC
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYY-HQKKGW--KPALVCADTFRAGAFDQLKQNATKAKIP----F------YGSY--TES 166 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~-l~~~g~--~v~iv~~D~~~~~~~~~l~~~~~~~~v~----~------~~~~--~~~ 166 (344)
+.++++|++|+||||++..+... +...+. .+.++-..|.+..+...........+.. + .... ...
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 156 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHA 156 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSS
T ss_pred CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCC
Confidence 57899999999999987766544 333333 4455555555544332222222111100 0 0000 000
Q ss_pred C----HHHHHHHHHHHHHhCCCCEEEEcCCCCCcchHHHH-HHHHHhhhhcCCcEEEEEEcCCcchhH
Q 019214 167 D----PVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALF-EEMRQVSEATNPDLVIFVMDSSIGQAA 229 (344)
Q Consensus 167 ~----~~~~~~~~l~~~~~~~~d~vlIDT~G~~~~~~~~~-~~l~~~~~~~~~d~illvvda~~~~~~ 229 (344)
+ ....+.+.+.. ...+++++++|.+-....+.+.. ..++.+... .++.-++++.|+...+.
T Consensus 157 ~Ivv~Tpg~l~~~l~~-~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~-~~~~~~il~SAT~~~~~ 222 (235)
T 3llm_A 157 SIMFCTVGVLLRKLEA-GIRGISHVIVDEIHERDINTDFLLVVLRDVVQA-YPEVRIVLMSATIDTSM 222 (235)
T ss_dssp EEEEEEHHHHHHHHHH-CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHH-CTTSEEEEEECSSCCHH
T ss_pred eEEEECHHHHHHHHHh-hhcCCcEEEEECCccCCcchHHHHHHHHHHHhh-CCCCeEEEEecCCCHHH
Confidence 0 01222222322 24588999999987643333333 334444433 24566788888876443
No 391
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.03 E-value=0.00067 Score=62.21 Aligned_cols=38 Identities=34% Similarity=0.397 Sum_probs=30.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHH------------HcC----CccEEeecC
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQ------------KKG----WKPALVCAD 138 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~------------~~g----~~v~iv~~D 138 (344)
..++.|.|+||+||||++..++.... ..| .+|+.++.+
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e 151 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTE 151 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECC
Confidence 47899999999999999999997642 234 678888875
No 392
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.03 E-value=0.00042 Score=60.94 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYH 125 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l 125 (344)
+.+++++|++||||||++..|+..+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999766
No 393
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.02 E-value=0.00044 Score=58.11 Aligned_cols=33 Identities=33% Similarity=0.558 Sum_probs=26.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecC
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D 138 (344)
+.+|+++|++||||||++..|+..+ |. ..++.|
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l---~~--~~i~~d 41 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY---GY--THLSTG 41 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh---CC--eEEcHH
Confidence 4689999999999999999999765 33 355654
No 394
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.02 E-value=0.0005 Score=63.48 Aligned_cols=34 Identities=26% Similarity=0.375 Sum_probs=29.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcC
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~ 140 (344)
++|+|+||+||||||++..|+..+ .+.+++.|.+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l-----~~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF-----NGEIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT-----TEEEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc-----CCceeccccc
Confidence 589999999999999999999654 3678999975
No 395
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.02 E-value=0.0045 Score=57.52 Aligned_cols=39 Identities=21% Similarity=0.192 Sum_probs=31.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHc-CCccEEeecCcC
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKK-GWKPALVCADTF 140 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~-g~~v~iv~~D~~ 140 (344)
+.++|+|++|+||||++..++..+... +..+.-+++...
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~ 84 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY 84 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccC
Confidence 379999999999999999999888766 566666775443
No 396
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.01 E-value=0.0025 Score=62.54 Aligned_cols=37 Identities=22% Similarity=0.308 Sum_probs=31.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeec
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~ 137 (344)
..+++++|++|+||||++..++..+...|.++..++.
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ 317 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENACANKERAILFAY 317 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 3689999999999999999999988777887755544
No 397
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.01 E-value=0.00045 Score=57.64 Aligned_cols=34 Identities=29% Similarity=0.401 Sum_probs=26.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCc
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~ 139 (344)
++.|+++|++||||||++..|+..+ | ..+++.|.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l---~--~~~i~~d~ 38 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT---K--RILYDSDK 38 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH---C--CCEEEHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh---C--CCEEEChH
Confidence 3578999999999999999999765 3 34566654
No 398
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.00 E-value=0.00037 Score=59.65 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYH 125 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l 125 (344)
++.+++++||+|+||||+++.|+..+
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999999655
No 399
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.00 E-value=0.002 Score=64.44 Aligned_cols=36 Identities=25% Similarity=0.276 Sum_probs=29.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHH----cCCccEEeec
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQK----KGWKPALVCA 137 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~----~g~~v~iv~~ 137 (344)
+.+++.|+||+||||+++.+...+.. .|.+|.++..
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~AP 204 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAP 204 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeC
Confidence 67899999999999999999998874 3556665554
No 400
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.00 E-value=0.0064 Score=58.05 Aligned_cols=109 Identities=15% Similarity=0.127 Sum_probs=60.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 179 (344)
..++..+.|+||+||||++.+++. ..++.+++. +..+.+.++.-....+.+... ... +......+..-
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~~-----~~~~lVlTp---T~~aa~~l~~kl~~~~~~~~~-~~~---V~T~dsfL~~~ 227 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRVN-----FEEDLILVP---GRQAAEMIRRRANASGIIVAT-KDN---VRTVDSFLMNY 227 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHCC-----TTTCEEEES---CHHHHHHHHHHHTTTSCCCCC-TTT---EEEHHHHHHTT
T ss_pred cccEEEEEcCCCCCHHHHHHHHhc-----cCCeEEEeC---CHHHHHHHHHHhhhcCccccc-cce---EEEeHHhhcCC
Confidence 457889999999999999998872 256677776 444455544433211110000 000 00001111111
Q ss_pred HhC---CCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCCc
Q 019214 180 KKE---NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSI 225 (344)
Q Consensus 180 ~~~---~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~~ 225 (344)
... .+|+++||-++..+. ..+.. +.....+..++++-|+.+
T Consensus 228 ~~~~~~~~d~liiDE~sm~~~--~~l~~---l~~~~~~~~vilvGD~~Q 271 (446)
T 3vkw_A 228 GKGARCQFKRLFIDEGLMLHT--GCVNF---LVEMSLCDIAYVYGDTQQ 271 (446)
T ss_dssp TSSCCCCCSEEEEETGGGSCH--HHHHH---HHHHTTCSEEEEEECTTS
T ss_pred CCCCCCcCCEEEEeCcccCCH--HHHHH---HHHhCCCCEEEEecCccc
Confidence 111 289999999997753 22222 223344578999999865
No 401
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.99 E-value=0.00043 Score=59.57 Aligned_cols=33 Identities=27% Similarity=0.369 Sum_probs=26.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCc
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~ 139 (344)
+.+|+|+|++||||||++..|+. ....+++.|.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~------lg~~~id~D~ 36 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD------LGINVIDADI 36 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH------TTCEEEEHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH------cCCEEEEccH
Confidence 47899999999999999999984 3346677763
No 402
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.99 E-value=0.00044 Score=57.71 Aligned_cols=33 Identities=24% Similarity=0.403 Sum_probs=26.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecC
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D 138 (344)
+..|+++|++||||||++..|+..+ | ...++.|
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l---~--~~~i~~d 36 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL---G--FKKLSTG 36 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH---T--CEEECHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---C--CeEecHH
Confidence 3679999999999999999999765 3 3455554
No 403
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.99 E-value=0.00068 Score=56.09 Aligned_cols=26 Identities=23% Similarity=0.241 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHH
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQK 127 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~ 127 (344)
..+.++|++|+||||++..++..+..
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHh
Confidence 45889999999999999999998866
No 404
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.99 E-value=0.0037 Score=58.12 Aligned_cols=35 Identities=29% Similarity=0.278 Sum_probs=27.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeec
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~ 137 (344)
.++.+.++|+||+||||++..++..+ +.....+++
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~i~~ 150 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS---GATFFSISA 150 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT---TCEEEEEEG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc---CCeEEEEeh
Confidence 45679999999999999999998654 555555554
No 405
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.99 E-value=0.002 Score=57.98 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYH 125 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l 125 (344)
++.+.+.||||+||||++..++..+
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4679999999999999999999654
No 406
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.97 E-value=0.00066 Score=60.14 Aligned_cols=34 Identities=26% Similarity=0.255 Sum_probs=27.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcC
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~ 140 (344)
++|+|+|++||||||++..|+..+ | ..+++.|..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~---~--~~~i~~D~~ 35 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET---G--WPVVALDRV 35 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH---C--CCEEECCSG
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC---C--CeEEeccHH
Confidence 478999999999999999999655 3 346777753
No 407
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.97 E-value=0.0093 Score=54.54 Aligned_cols=28 Identities=7% Similarity=-0.053 Sum_probs=24.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQK 127 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~ 127 (344)
.+..+.+.||||+|||+++..++..+..
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4467899999999999999999999965
No 408
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.96 E-value=0.00059 Score=57.87 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=27.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecC
Q 019214 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (344)
Q Consensus 99 ~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D 138 (344)
..+.+|+++|+|||||||++..|+..+ |.. +++.|
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l---~~~--~i~~d 52 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKL---GIP--QISTG 52 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHH---TCC--EEEHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh---CCc--EEehh
Confidence 345689999999999999999999766 433 45654
No 409
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.95 E-value=0.00061 Score=57.78 Aligned_cols=36 Identities=31% Similarity=0.372 Sum_probs=28.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecC
Q 019214 98 KGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (344)
Q Consensus 98 ~~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D 138 (344)
..++++|+|+|++||||||++..|+..+ | ..+++.|
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~---g--~~~i~~d 47 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDY---S--FVHLSAG 47 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHS---S--CEEEEHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHc---C--ceEEeHH
Confidence 3456889999999999999999998643 3 4566665
No 410
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.95 E-value=0.00049 Score=58.33 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYH 125 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l 125 (344)
+.+++++|++||||||++..|+..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998654
No 411
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.94 E-value=0.0016 Score=56.10 Aligned_cols=38 Identities=24% Similarity=0.319 Sum_probs=31.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCC-ccEEeecCc
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGW-KPALVCADT 139 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~-~v~iv~~D~ 139 (344)
++.|+|.|++|+||||.+..|+..|...|. .| +.+-.|
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v-~~~rep 41 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDM-VFTREP 41 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCE-EEEESS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcc-eeeeCC
Confidence 368999999999999999999999999998 55 444444
No 412
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.94 E-value=0.0007 Score=62.39 Aligned_cols=36 Identities=19% Similarity=0.427 Sum_probs=29.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcC
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~ 140 (344)
++++|+|+||+||||||++..||. ....-+|+.|..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~-----~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAA-----HFPLEVINSDKM 74 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHT-----TSCEEEEECCSS
T ss_pred CCceEEEECCCCCCHHHHHHHHHH-----HCCCcEEccccc
Confidence 446899999999999999999994 235678999963
No 413
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.94 E-value=0.00041 Score=60.02 Aligned_cols=26 Identities=23% Similarity=0.216 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYH 125 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l 125 (344)
++.+++|+||+|+||||+++.|+..+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999999755
No 414
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.93 E-value=0.0012 Score=60.56 Aligned_cols=35 Identities=26% Similarity=0.351 Sum_probs=28.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcC
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~ 140 (344)
+++|+++||+||||||++..|+..+ ...+++.|.+
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l-----~~~iis~Ds~ 39 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADAL-----PCELISVDSA 39 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS-----CEEEEEECTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc-----CCcEEeccch
Confidence 3689999999999999999999543 4678888853
No 415
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.92 E-value=0.00055 Score=59.05 Aligned_cols=32 Identities=31% Similarity=0.350 Sum_probs=25.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecC
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D 138 (344)
.+|+++|++||||||++..|+..+ .+..++.|
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~-----g~~~~d~g 37 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL-----QWHLLDSG 37 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH-----TCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh-----CCCcccCc
Confidence 579999999999999999999544 24455554
No 416
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.92 E-value=0.00057 Score=55.96 Aligned_cols=20 Identities=35% Similarity=0.614 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 019214 102 SVIMFVGLQGSGKTTTCTKY 121 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~L 121 (344)
.+|+++|+|||||||++..|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999998
No 417
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.92 E-value=0.0024 Score=58.51 Aligned_cols=34 Identities=24% Similarity=0.166 Sum_probs=26.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeec
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~ 137 (344)
++-+.+.||||+|||+++.+++..+ +..+..+++
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~---~~~~~~v~~ 84 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSS 84 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHH---TCEEEEEEH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH---CCCEEEEch
Confidence 4569999999999999999999765 444444444
No 418
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.91 E-value=0.00079 Score=56.23 Aligned_cols=34 Identities=35% Similarity=0.545 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecC
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D 138 (344)
.+++|+++|++||||||++..|+..+ | ..+++.|
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l---~--~~~i~~d 38 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDF---G--WVHLSAG 38 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHh---C--CeEeeHH
Confidence 34789999999999999999999655 3 4556664
No 419
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.90 E-value=0.005 Score=57.07 Aligned_cols=38 Identities=32% Similarity=0.380 Sum_probs=29.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc------CCccEEeecC
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKK------GWKPALVCAD 138 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~------g~~v~iv~~D 138 (344)
+..+.|+||||+||||++..++..+... +..+.-+++.
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 4568999999999999999999988654 4455556653
No 420
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.90 E-value=0.00065 Score=58.53 Aligned_cols=34 Identities=18% Similarity=0.286 Sum_probs=26.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecC
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D 138 (344)
++..|+|+|+|||||||++..|+..+ | ..+++.|
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l---~--~~~i~~d 36 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF---H--AAHLATG 36 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc---C--ceEEehh
Confidence 34689999999999999999999765 3 3456653
No 421
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.89 E-value=0.0062 Score=52.04 Aligned_cols=34 Identities=29% Similarity=0.345 Sum_probs=28.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEee
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC 136 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~ 136 (344)
+.|+|=|..||||||.+..|+..|. +|+++....
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~~~ 36 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV-KDYDVIMTR 36 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH-CCCCEEEee
Confidence 5788889999999999999999996 477776554
No 422
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.89 E-value=0.00061 Score=57.35 Aligned_cols=34 Identities=29% Similarity=0.428 Sum_probs=27.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCc
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~ 139 (344)
+.+|+++|++||||||++..|+..+ | ..+++.|.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l---~--~~~i~~d~ 45 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY---G--FTHLSTGE 45 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH---T--CEEEEHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh---C--CeEEcHHH
Confidence 3689999999999999999999765 3 45666653
No 423
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.89 E-value=0.00085 Score=63.92 Aligned_cols=37 Identities=24% Similarity=0.162 Sum_probs=29.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeec
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~ 137 (344)
..+++|+||+|+||||+++.|+..+...+.+|.++..
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed 203 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVED 203 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEES
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecc
Confidence 4689999999999999999999888655556665553
No 424
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.87 E-value=0.0006 Score=58.84 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYH 125 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l 125 (344)
++..|+|+|++||||||++..|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34679999999999999999999766
No 425
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.87 E-value=0.00047 Score=62.14 Aligned_cols=36 Identities=22% Similarity=0.397 Sum_probs=28.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCc
Q 019214 98 KGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (344)
Q Consensus 98 ~~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~ 139 (344)
.+++.+|+|+|++||||||++..|+. + | ..++++|.
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La~-l---g--~~~id~D~ 107 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLKN-L---G--AYIIDSDH 107 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHHH-H---T--CEEEEHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH-C---C--CcEEehhH
Confidence 34578999999999999999999983 2 5 45678775
No 426
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.86 E-value=0.0017 Score=61.23 Aligned_cols=34 Identities=24% Similarity=0.388 Sum_probs=28.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCc
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~ 139 (344)
+++|+|+||+||||||++..|+..+. ..+|+.|.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~-----~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN-----GEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT-----EEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC-----CeEeecCc
Confidence 36899999999999999999997663 35788886
No 427
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.84 E-value=0.0021 Score=59.26 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=25.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCccEEee
Q 019214 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC 136 (344)
Q Consensus 104 i~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~ 136 (344)
+.|+||+|+||||++..++..+...+.++.++.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~ 81 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLE 81 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCccceEEE
Confidence 899999999999999999988765443333333
No 428
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.84 E-value=0.00074 Score=55.43 Aligned_cols=26 Identities=27% Similarity=0.221 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYH 125 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l 125 (344)
+..+++++|++|+||||++..|+..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34689999999999999999999776
No 429
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.84 E-value=0.0055 Score=56.44 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=21.1
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Q 019214 104 IMFVGLQGSGKTTTCTKYAYYHQ 126 (344)
Q Consensus 104 i~ivG~~GvGKTTl~~~La~~l~ 126 (344)
+.|+||+|+||||++..++..+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 89999999999999999998663
No 430
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.83 E-value=0.0016 Score=62.58 Aligned_cols=36 Identities=17% Similarity=0.244 Sum_probs=30.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHc--CCccEEeec
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKK--GWKPALVCA 137 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~--g~~v~iv~~ 137 (344)
..+.|.||||+||||++..++..+... +.++..+++
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~ 168 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 458999999999999999999988765 677777776
No 431
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.83 E-value=0.00071 Score=56.24 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYH 125 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l 125 (344)
++.|+++|++|+||||++..|+..+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999765
No 432
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.83 E-value=0.00066 Score=58.85 Aligned_cols=26 Identities=12% Similarity=0.188 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQ 126 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~ 126 (344)
+.+++++||+||||||++..|+..+.
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 46899999999999999999996553
No 433
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.82 E-value=0.0029 Score=70.59 Aligned_cols=90 Identities=19% Similarity=0.175 Sum_probs=56.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcC-cchhHHHHHhhc-ccCCcceeccCCCCCHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF-RAGAFDQLKQNA-TKAKIPFYGSYTESDPVRIAVEGVE 177 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~-~~~~~~~l~~~~-~~~~v~~~~~~~~~~~~~~~~~~l~ 177 (344)
++..+.++||||+|||+++.+++.....+|.+++.++.+-. .+-. .+.+. ....+.+. ..++.+.+.+.++
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~---a~~~G~dl~~l~v~----~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDIDNLLCS----QPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH---HHHTTCCTTTCEEE----CCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHH---HHHcCCCchhceee----cCChHHHHHHHHH
Confidence 45789999999999999999999999889999999998521 1111 11111 11112111 1222333323333
Q ss_pred H-HHhCCCCEEEEcCC-CCCc
Q 019214 178 T-FKKENCDLIIVDTS-GRHK 196 (344)
Q Consensus 178 ~-~~~~~~d~vlIDT~-G~~~ 196 (344)
. .+...+++++||.- ++.+
T Consensus 1499 ~lvr~~~~~lVVIDsi~al~p 1519 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVAALTP 1519 (2050)
T ss_dssp HHHHHTCCSEEEESCGGGCCC
T ss_pred HHHhcCCCCEEEEcChhHhcc
Confidence 2 24468999999996 4544
No 434
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.82 E-value=0.00089 Score=58.87 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYH 125 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l 125 (344)
++..|+++|+|||||||++..|+..+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999999655
No 435
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.82 E-value=0.00051 Score=58.32 Aligned_cols=36 Identities=31% Similarity=0.417 Sum_probs=29.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcC
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~ 140 (344)
...+|+++|++||||||++..|+..+ | +.++++|.+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l---g--~~vid~D~~ 46 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY---G--AHVVNVDRI 46 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH---C--CEEEEHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc---C--CEEEECcHH
Confidence 44789999999999999999999643 3 677888754
No 436
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.81 E-value=0.0007 Score=56.10 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYA 122 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La 122 (344)
++.+++++|++|+||||+++.+.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 34789999999999999999754
No 437
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.81 E-value=0.00076 Score=56.92 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYH 125 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l 125 (344)
.|+|+|++||||||++..|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999999776
No 438
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.80 E-value=0.0049 Score=53.02 Aligned_cols=111 Identities=14% Similarity=0.070 Sum_probs=62.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeec--CcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA--DTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE 177 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~--D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 177 (344)
...+.+++|+-|+||||.+...+..+...|+++.++.. |. |.+. .....+.+......... ++.++ +.
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~-R~~~----~~I~Sr~G~~~~a~~v~-~~~di----~~ 96 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDD-RYHK----EKVVSHNGNAIEAINIS-KASEI----MT 96 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC----------------CBTTBCCEEEEES-SGGGG----GG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCC-cchh----hhHHHhcCCceeeEEeC-CHHHH----HH
Confidence 45788999999999999888888888888999998854 32 1110 11223333322111000 00000 00
Q ss_pred HHHhCCCCEEEEcCCCCCcchHHHHHHHHHhhhhcCCcEEEEEEcCC
Q 019214 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSS 224 (344)
Q Consensus 178 ~~~~~~~d~vlIDT~G~~~~~~~~~~~l~~~~~~~~~d~illvvda~ 224 (344)
.+ ..++|+|+||-+-+... +.++.+..+. ...-++++.=+|..
T Consensus 97 ~i-~~~~dvV~IDEaQFf~~--~~v~~l~~la-~~gi~Vi~~GLd~D 139 (219)
T 3e2i_A 97 HD-LTNVDVIGIDEVQFFDD--EIVSIVEKLS-ADGHRVIVAGLDMD 139 (219)
T ss_dssp SC-CTTCSEEEECCGGGSCT--HHHHHHHHHH-HTTCEEEEEEESBC
T ss_pred HH-hcCCCEEEEechhcCCH--HHHHHHHHHH-HCCCEEEEeecccc
Confidence 11 24789999999988653 3445555544 23445666666654
No 439
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.80 E-value=0.00073 Score=56.65 Aligned_cols=22 Identities=36% Similarity=0.685 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAY 123 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~ 123 (344)
.+++++|++|+||||++..|+.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999984
No 440
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.79 E-value=0.00043 Score=60.23 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=17.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHH-HHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYA-YYH 125 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La-~~l 125 (344)
++.+++++||+||||||++..|+ ..+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 44789999999999999999998 665
No 441
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.78 E-value=0.00048 Score=57.23 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=18.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYH 125 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l 125 (344)
++.+|+++|++||||||++..|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999998654
No 442
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.77 E-value=0.00087 Score=55.33 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=23.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHH
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQK 127 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~ 127 (344)
..+.++|++|+||||++..++..+..
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHh
Confidence 45789999999999999999988865
No 443
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.77 E-value=0.00075 Score=56.26 Aligned_cols=33 Identities=36% Similarity=0.478 Sum_probs=26.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCc
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~ 139 (344)
.+|+++|+|||||||++..|+..+ | ..+++.|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l---g--~~~id~D~ 35 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL---G--VGLLDTDV 35 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH---T--CCEEEHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc---C--CCEEeCch
Confidence 468999999999999999999755 3 34677764
No 444
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.76 E-value=0.00087 Score=60.67 Aligned_cols=39 Identities=18% Similarity=0.183 Sum_probs=32.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcC
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~ 140 (344)
..+.|+||||+||||++..++..+...+..+..+++..+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~ 86 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY 86 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGC
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccc
Confidence 579999999999999999999988776666777777544
No 445
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.76 E-value=0.0009 Score=57.42 Aligned_cols=23 Identities=30% Similarity=0.592 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYH 125 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l 125 (344)
+|+|+|||||||+|.+..|+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999755
No 446
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.76 E-value=0.00078 Score=55.77 Aligned_cols=32 Identities=31% Similarity=0.418 Sum_probs=25.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCc
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~ 139 (344)
+|+++|+|||||||++..|+..+ | ...++.|.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l---~--~~~~d~d~ 37 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL---D--LVFLDSDF 37 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH---T--CEEEEHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc---C--CCEEcccH
Confidence 58999999999999999999765 3 45566654
No 447
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.75 E-value=0.0007 Score=58.65 Aligned_cols=34 Identities=18% Similarity=0.223 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecC
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D 138 (344)
++..|+|+|++||||||++..|+..+ | ...++.|
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l---~--~~~i~~d 39 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF---E--LKHLSSG 39 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS---S--SEEEEHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc---C--CeEEech
Confidence 34689999999999999999999654 3 3456653
No 448
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.74 E-value=0.0098 Score=51.66 Aligned_cols=38 Identities=18% Similarity=0.161 Sum_probs=34.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeec
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~ 137 (344)
...+..++|+.|+||||.+..++..+...|++|.++..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp 55 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKY 55 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEee
Confidence 35788999999999999999999999999999999873
No 449
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.74 E-value=0.00086 Score=55.12 Aligned_cols=33 Identities=33% Similarity=0.392 Sum_probs=26.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCc
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~ 139 (344)
++|+++|++||||||++..|+..+ | ..+++.|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l---g--~~~id~d~ 35 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL---G--YEFVDTDI 35 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH---T--CEEEEHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh---C--CcEEcccH
Confidence 469999999999999999999765 3 34667653
No 450
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.73 E-value=0.0015 Score=55.49 Aligned_cols=33 Identities=24% Similarity=0.410 Sum_probs=26.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCc
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~ 139 (344)
.+.|+|+|++|+||||++..|+. .|. .+|+.|.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~----~g~--~iIsdDs 66 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQ----RGH--RLIADDR 66 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHT----TTC--EEEESSE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH----hCC--eEEecch
Confidence 47799999999999999999883 244 7888874
No 451
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.73 E-value=0.00078 Score=59.03 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAY 123 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~ 123 (344)
+..+++++||+|+||||++..|+.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 346899999999999999999993
No 452
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.71 E-value=0.0011 Score=60.28 Aligned_cols=29 Identities=24% Similarity=0.525 Sum_probs=24.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGW 130 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~ 130 (344)
++.+++|+||+|+||||++..|+..+ .|.
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~--~G~ 153 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL--GGS 153 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH--TCE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc--Cce
Confidence 33689999999999999999999887 453
No 453
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.70 E-value=0.0037 Score=64.15 Aligned_cols=36 Identities=19% Similarity=0.128 Sum_probs=31.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeec
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~ 137 (344)
..+.|+||||+|||+++..++..+...+....-+++
T Consensus 522 ~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~ 557 (758)
T 3pxi_A 522 GSFIFLGPTGVGKTELARALAESIFGDEESMIRIDM 557 (758)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEec
Confidence 369999999999999999999998777777777777
No 454
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.70 E-value=0.0011 Score=66.10 Aligned_cols=41 Identities=24% Similarity=0.327 Sum_probs=35.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcC
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~ 140 (344)
++.+|.|+|.+||||||++..|+..|...|..+..++.|..
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 45789999999999999999999999888888877776543
No 455
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.69 E-value=0.0011 Score=56.85 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYH 125 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l 125 (344)
.|+|+|+|||||||++..|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998655
No 456
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.66 E-value=0.00085 Score=58.34 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYA 122 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La 122 (344)
++.+++++||+|+||||++..|+
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~ 51 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILG 51 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 34689999999999999999999
No 457
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.66 E-value=0.0028 Score=58.91 Aligned_cols=33 Identities=24% Similarity=0.170 Sum_probs=25.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeec
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~ 137 (344)
+-+.++||||+|||+++.+++..+ +.....+++
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~---~~~~~~v~~ 117 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSS 117 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH---TCEEEEEEH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh---CCCEEEeeH
Confidence 458899999999999999999876 444444443
No 458
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.65 E-value=0.0011 Score=58.68 Aligned_cols=25 Identities=36% Similarity=0.453 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYH 125 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l 125 (344)
+.+|+|+|++||||||++..|+..|
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999544
No 459
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.64 E-value=0.00098 Score=57.37 Aligned_cols=33 Identities=27% Similarity=0.405 Sum_probs=26.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecC
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D 138 (344)
+..|+|+|+|||||||++..|+..+ | ..+++.|
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l---~--~~~i~~d 37 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY---G--LAHLSTG 37 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh---C--ceEEehh
Confidence 4578999999999999999999776 4 3455553
No 460
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.64 E-value=0.0028 Score=65.04 Aligned_cols=70 Identities=20% Similarity=0.188 Sum_probs=42.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcceeccCCCCCHHHHHHHHHHH
Q 019214 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (344)
Q Consensus 99 ~~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 178 (344)
..++-|.+.||||+|||+++.++|..+ |.....|++ .... . ....+....++..+..
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~el---g~~~~~v~~-----------~~l~--------s-k~~gese~~lr~lF~~ 292 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANET---GAFFFLING-----------PEIM--------S-KLAGESESNLRKAFEE 292 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTTT---TCEEEEEEH-----------HHHH--------S-SCTTHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHh---CCeEEEEEh-----------HHhh--------c-ccchHHHHHHHHHHHH
Confidence 356779999999999999999999433 444444443 1100 0 1111223334455555
Q ss_pred HHhCCCCEEEEcC
Q 019214 179 FKKENCDLIIVDT 191 (344)
Q Consensus 179 ~~~~~~d~vlIDT 191 (344)
.+...+-++|||-
T Consensus 293 A~~~~PsIIfIDE 305 (806)
T 3cf2_A 293 AEKNAPAIIFIDE 305 (806)
T ss_dssp HTTSCSEEEEEES
T ss_pred HHHcCCeEEEEeh
Confidence 6555677888874
No 461
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.64 E-value=0.0031 Score=56.03 Aligned_cols=34 Identities=24% Similarity=0.289 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEee
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC 136 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~ 136 (344)
.+..+.++||||+|||+++..++..+ +.....++
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~~~i~ 96 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEES---NFPFIKIC 96 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHH---TCSEEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHh---CCCEEEEe
Confidence 34678999999999999999999763 45544443
No 462
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.63 E-value=0.0064 Score=66.96 Aligned_cols=86 Identities=19% Similarity=0.122 Sum_probs=0.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcCcchhHHHHHhhcccCCcce--eccCCCCCHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPF--YGSYTESDPVRIAVEGVE 177 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~~~~~~~~l~~~~~~~~v~~--~~~~~~~~~~~~~~~~l~ 177 (344)
+..++.|.|+||+||||++.+++...+..|.+|+.++.+-... ...+...+++. .......+..........
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~~------~~~a~~lGvd~~~L~i~~~~~~e~~l~~l~~ 455 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD------PIYARKLGVDIDNLLCSQPDTGEQALEICDA 455 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCC------HHHHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchH------HHHHHHcCCCHHHeEEcCCCCHHHHHHHHHH
Q ss_pred HHHhCCCCEEEEcC
Q 019214 178 TFKKENCDLIIVDT 191 (344)
Q Consensus 178 ~~~~~~~d~vlIDT 191 (344)
..+..++++|+||.
T Consensus 456 lv~~~~~~lVVIDS 469 (1706)
T 3cmw_A 456 LARSGAVDVIVVDS 469 (1706)
T ss_dssp HHHHTCCSEEEESC
T ss_pred HHHhcCCCEEEECC
No 463
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.61 E-value=0.001 Score=59.28 Aligned_cols=24 Identities=33% Similarity=0.463 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAY 123 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~ 123 (344)
++.+++++||+|+||||++..|+.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999993
No 464
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.60 E-value=0.0014 Score=53.80 Aligned_cols=34 Identities=18% Similarity=0.340 Sum_probs=26.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCc
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~ 139 (344)
..+|+++|++||||||++..|+..+ |. .+++.|.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l---g~--~~id~D~ 40 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL---KL--EVLDTDM 40 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH---TC--CEEEHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh---CC--CEEEChH
Confidence 3689999999999999999999665 43 4566653
No 465
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.59 E-value=0.0014 Score=53.54 Aligned_cols=32 Identities=22% Similarity=0.230 Sum_probs=25.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCc
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~ 139 (344)
.|+++|++||||||++..|+..+ | ..+++.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l---~--~~~i~~d~ 33 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL---N--IPFYDVDE 33 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH---T--CCEEEHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---C--CCEEECcH
Confidence 58999999999999999999765 3 34566653
No 466
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.59 E-value=0.0016 Score=56.72 Aligned_cols=34 Identities=24% Similarity=0.262 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecC
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D 138 (344)
++..|+|+|++||||||++..|+..+ | ...++.|
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l---~--~~~i~~d 48 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF---C--VCHLATG 48 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH---T--CEEEEHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh---C--CceecHH
Confidence 44679999999999999999999776 3 4456653
No 467
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.59 E-value=0.0011 Score=58.08 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYH 125 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l 125 (344)
++.+++++||+|+||||++..|+..+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999999443
No 468
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.57 E-value=0.0068 Score=67.67 Aligned_cols=40 Identities=25% Similarity=0.263 Sum_probs=35.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCc
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~ 139 (344)
++.++.|.|+||+||||++.+++...+..|.+|+.++..-
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~ 421 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 421 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCC
Confidence 3468999999999999999999999998899999998853
No 469
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.57 E-value=0.0013 Score=57.98 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYH 125 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l 125 (344)
++.+++++||+|+||||++..|+..+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44789999999999999999999544
No 470
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.56 E-value=0.0013 Score=55.56 Aligned_cols=22 Identities=32% Similarity=0.357 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYY 124 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~ 124 (344)
.|+|+||+||||||++.+|...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4889999999999999998754
No 471
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.55 E-value=0.0011 Score=59.56 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAY 123 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~ 123 (344)
++.+++++||+|+||||++..|+.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHc
Confidence 346899999999999999999993
No 472
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.55 E-value=0.0021 Score=63.80 Aligned_cols=41 Identities=22% Similarity=0.308 Sum_probs=35.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcC-CccEEeecCcC
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKG-WKPALVCADTF 140 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g-~~v~iv~~D~~ 140 (344)
++.+|+|+|.+||||||++..|+..|...| +.+..++.|..
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~i 436 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTV 436 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHH
Confidence 457899999999999999999999998777 78888887654
No 473
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.55 E-value=0.0013 Score=57.73 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAY 123 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~ 123 (344)
.+++++||+|+||||++..|+.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999993
No 474
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.55 E-value=0.0012 Score=56.61 Aligned_cols=31 Identities=19% Similarity=0.289 Sum_probs=24.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecC
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D 138 (344)
.|+|+|+|||||||++..|+..+ ...+++.|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~-----~~~~i~~d 32 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY-----GIPHISTG 32 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS-----SCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-----CCcEEeHH
Confidence 48899999999999999998543 34456653
No 475
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.55 E-value=0.0012 Score=58.86 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAY 123 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~ 123 (344)
++.+++++||+|+||||++..|+.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHc
Confidence 446899999999999999999993
No 476
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.55 E-value=0.0016 Score=57.00 Aligned_cols=34 Identities=21% Similarity=0.274 Sum_probs=26.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCc
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~ 139 (344)
+.+|+|+|++|+||||++..|+..+ | ...++.|.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l---g--~~~~d~g~ 42 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL---G--ARYLDTGA 42 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH---T--CEEEEHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---C--CCcccCCc
Confidence 4689999999999999999999765 3 34455543
No 477
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=96.53 E-value=0.002 Score=63.53 Aligned_cols=41 Identities=27% Similarity=0.331 Sum_probs=36.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeecCcC
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~D~~ 140 (344)
.+.+|.++|++|+||||++..|+..+...|+.+.+++.|..
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~i 411 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVV 411 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHh
Confidence 35789999999999999999999999888999999998754
No 478
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.53 E-value=0.0012 Score=58.60 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYY 124 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~ 124 (344)
++.+++++||+|+||||++..|+..
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999943
No 479
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.51 E-value=0.0012 Score=58.95 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYY 124 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~ 124 (344)
++.+++++||+|+||||++..|+..
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3468999999999999999999943
No 480
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.51 E-value=0.0015 Score=57.72 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYA 122 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La 122 (344)
++.+++++||+|+||||++..|+
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~ 50 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILA 50 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 34689999999999999999999
No 481
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.51 E-value=0.0013 Score=57.85 Aligned_cols=25 Identities=32% Similarity=0.539 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYY 124 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~ 124 (344)
++.+++++||+|+||||++..|+..
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999943
No 482
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.51 E-value=0.0015 Score=60.86 Aligned_cols=21 Identities=24% Similarity=0.483 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 019214 102 SVIMFVGLQGSGKTTTCTKYA 122 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La 122 (344)
.+++++|++|||||||++.|+
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~ 236 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALL 236 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHh
Confidence 589999999999999999999
No 483
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.51 E-value=0.0011 Score=57.20 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYY 124 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~ 124 (344)
+.+++++||+|+||||++..|+..
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 367999999999999999999943
No 484
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.50 E-value=0.0013 Score=57.37 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYYH 125 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~l 125 (344)
++.+++++||+|+||||++..|+..+
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999999443
No 485
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.50 E-value=0.0016 Score=58.19 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYA 122 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La 122 (344)
++.+++++||+|+||||++..|+
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~ 67 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLA 67 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 34689999999999999999999
No 486
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.50 E-value=0.0014 Score=58.27 Aligned_cols=24 Identities=29% Similarity=0.420 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAY 123 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~ 123 (344)
++.+++++||+|+||||++..|+.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999993
No 487
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.49 E-value=0.0013 Score=58.00 Aligned_cols=24 Identities=38% Similarity=0.405 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAY 123 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~ 123 (344)
++.+++++||+|+||||++..|+.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999993
No 488
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.49 E-value=0.0013 Score=52.78 Aligned_cols=33 Identities=12% Similarity=0.173 Sum_probs=26.9
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeec
Q 019214 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (344)
Q Consensus 104 i~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~ 137 (344)
+.+.|+||+|||+++..++....+.+.... +++
T Consensus 27 vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~ 59 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRE 59 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHhCCccCCCEE-EEC
Confidence 889999999999999999876655566655 666
No 489
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.48 E-value=0.01 Score=57.35 Aligned_cols=24 Identities=33% Similarity=0.343 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYH 125 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l 125 (344)
+-+.++||||+||||++..++..+
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 448899999999999999999654
No 490
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.47 E-value=0.021 Score=51.90 Aligned_cols=34 Identities=24% Similarity=0.268 Sum_probs=25.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCccEEeec
Q 019214 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (344)
Q Consensus 101 ~~ii~ivG~~GvGKTTl~~~La~~l~~~g~~v~iv~~ 137 (344)
+..+.+.||||+||||++..++..+ +.++.-+++
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~ 81 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALCHDV---NADMMFVNG 81 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHHHHT---TEEEEEEET
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEcc
Confidence 3567778889999999999998765 444544554
No 491
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.46 E-value=0.0015 Score=58.13 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAY 123 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~ 123 (344)
++.+++++||+|+||||++..|+.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999994
No 492
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.44 E-value=0.0015 Score=57.79 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAY 123 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~ 123 (344)
++.+++++||+|+||||++..|+.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 346899999999999999999993
No 493
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.43 E-value=0.0016 Score=58.36 Aligned_cols=25 Identities=32% Similarity=0.406 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYY 124 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~ 124 (344)
++.+++++||+|+||||++..|+..
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4468999999999999999999943
No 494
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.43 E-value=0.0049 Score=55.83 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=23.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcC
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQKKG 129 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~~g 129 (344)
.+.|.||+|+||||++..++..+...+
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~~~~ 74 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELFGEN 74 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHGGG
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCc
Confidence 389999999999999999998875443
No 495
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.43 E-value=0.0019 Score=55.82 Aligned_cols=23 Identities=30% Similarity=0.270 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYH 125 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l 125 (344)
.|+|.|++||||||++..|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999776
No 496
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.42 E-value=0.002 Score=55.21 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYH 125 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l 125 (344)
.|+|+|+|||||||++..|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999766
No 497
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.40 E-value=0.0016 Score=55.60 Aligned_cols=24 Identities=17% Similarity=0.390 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYH 125 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l 125 (344)
..+.+.||||+||||++.+|+..+
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999999877
No 498
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.40 E-value=0.0036 Score=60.46 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHH
Q 019214 102 SVIMFVGLQGSGKTTTCTKYAYYHQK 127 (344)
Q Consensus 102 ~ii~ivG~~GvGKTTl~~~La~~l~~ 127 (344)
.-+.++|+||+|||+++..++..+..
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 35789999999999999999988865
No 499
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.40 E-value=0.005 Score=61.74 Aligned_cols=45 Identities=24% Similarity=0.303 Sum_probs=34.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH-cCCccEEeecCcCcchhHHHHHh
Q 019214 103 VIMFVGLQGSGKTTTCTKYAYYHQK-KGWKPALVCADTFRAGAFDQLKQ 150 (344)
Q Consensus 103 ii~ivG~~GvGKTTl~~~La~~l~~-~g~~v~iv~~D~~~~~~~~~l~~ 150 (344)
...|.||||+||||++..++..+.. .+.+|++++. ...+++++..
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~---tn~A~~~l~~ 242 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAP---SNIAVDQLTE 242 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEES---SHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeC---cHHHHHHHHH
Confidence 5788899999999999999998876 5777777765 4455555443
No 500
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.39 E-value=0.0017 Score=57.93 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 019214 100 KPSVIMFVGLQGSGKTTTCTKYAYY 124 (344)
Q Consensus 100 ~~~ii~ivG~~GvGKTTl~~~La~~ 124 (344)
++.+++++|++|+||||++..|+..
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3468999999999999999999943
Done!