BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>019215
MGKLLCDSTTVAAETFQTASPTVSWRDPSPTVDLVDQSADVTASTTSIGVAAWEEVIGLE
EQQRRHLERLHSKGVLWKHPEDQSRSIVFKLSHGGEVSADGNCLFTASQKAMTARDVDAR
ELRRRTVRRFLEDLGSVGEGQREMINDAIRHMYSPDLKNGWGIHVVQEVKLLAKKEDRVG
LDSAIDELVQLGMQREMAAESIYKERCIPVSDGPSWAKYMLISGSHDDEYDIITLQYTED
GLLSVDENREGHAAAFGDDIAIECLATEFNREIYVVQAHGSDAMVDEENCVFFLPHRPRS
DICEPPIFLFMKGTGWCGAGADHYEPLIANACSVISHEKVAMVL

High Scoring Gene Products

Symbol, full name Information P value
AT5G13100 protein from Arabidopsis thaliana 7.1e-132

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  019215
        (344 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2179882 - symbol:AT5G13100 species:3702 "Arabi...  1293  7.1e-132  1


>TAIR|locus:2179882 [details] [associations]
            symbol:AT5G13100 species:3702 "Arabidopsis thaliana"
            [GO:0009507 "chloroplast" evidence=ISM] EMBL:CP002688
            GenomeReviews:BA000015_GR EMBL:AL391711 EMBL:AY058168 EMBL:BT020363
            IPI:IPI00532362 RefSeq:NP_196814.1 UniGene:At.25168
            ProteinModelPortal:Q9FYA0 EnsemblPlants:AT5G13100.1 GeneID:831149
            KEGG:ath:AT5G13100 TAIR:At5g13100 eggNOG:NOG246843
            HOGENOM:HOG000070943 InParanoid:Q9FYA0 OMA:TIDENRD PhylomeDB:Q9FYA0
            ProtClustDB:CLSN2686850 Genevestigator:Q9FYA0 Uniprot:Q9FYA0
        Length = 354

 Score = 1293 (460.2 bits), Expect = 7.1e-132, P = 7.1e-132
 Identities = 252/358 (70%), Positives = 286/358 (79%)

Query:     1 MGKLLCDSTTVAAETFQTASPTVSWRDPSPT------VDLVDQSA-----DVTASTTSIG 49
             MGKLLCDST     TFQ+ SPTV WR+PS        VDLVDQSA     D    T +  
Sbjct:     1 MGKLLCDSTA----TFQSPSPTVPWREPSTVAVSLEDVDLVDQSAAAAAVDAVEKTMAAA 56

Query:    50 VA-AWEEVIGLEEQQRRHLERLHSKGVLWKHP--EDQSRSIVFKLSHGGEVSADGNCLFT 106
                AW+EV GLEE QRRHL RLH++GVLWKHP  ++ S S+VF+LSHGGEVS+DGNCLFT
Sbjct:    57 TTTAWDEVFGLEEAQRRHLSRLHARGVLWKHPGKDESSASVVFRLSHGGEVSSDGNCLFT 116

Query:   107 ASQKAMTARDVDAXXXXXXXXXXFLEDLGSVGEGQREMINDAIRHMYSPDLKNGWGIHVV 166
             ASQKAM AR +DA          FLED  S  E ++E+I DAIRHMYSPDLK+GWGIH+V
Sbjct:   117 ASQKAMEARGIDARDLRRRTVRRFLEDFRSASEEEKEVITDAIRHMYSPDLKSGWGIHIV 176

Query:   167 QEVKLLAKKEDRVGLDSAIDELVQLGMQREMAAESIYKERCIPVSDGPSWAKYMLISGSH 226
             QE KLLAKK++R  LDSAI+EL+Q+GM RE AAESIY+ERC+PV+DG SW+KYM ISGS 
Sbjct:   177 QEEKLLAKKDERESLDSAIEELLQIGMHRETAAESIYRERCLPVNDGLSWSKYMSISGST 236

Query:   227 DDEYDIITLQYTEDGLLSVDENREGHAAAFGDDIAIECLATEFNREIYVVQAHGSDAMVD 286
             +DEYDIITLQYTEDGLLSVDENREG AAAFGDDIAIECLATEF REIYVVQAHGSD MV+
Sbjct:   237 EDEYDIITLQYTEDGLLSVDENREGRAAAFGDDIAIECLATEFKREIYVVQAHGSDGMVE 296

Query:   287 EENCVFFLPHRPRSDICEPPIFLFMKGTGWCGAGADHYEPLIANACSVISHEKVAMVL 344
             EENCVFFLPH+PRS++ E P+FLFMKGTGWCG GADHYEPLIAN   +ISHEKVA+VL
Sbjct:   297 EENCVFFLPHKPRSEVLEVPVFLFMKGTGWCGGGADHYEPLIANPSPLISHEKVALVL 354


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.133   0.401    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      344       334   0.00091  116 3  11 22  0.41    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  621 (66 KB)
  Total size of DFA:  246 KB (2133 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  26.70u 0.09s 26.79t   Elapsed:  00:00:03
  Total cpu time:  26.70u 0.09s 26.79t   Elapsed:  00:00:04
  Start:  Sat May 11 03:46:27 2013   End:  Sat May 11 03:46:31 2013

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