Query 019215
Match_columns 344
No_of_seqs 18 out of 20
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 12:40:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019215.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019215hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3by4_A OTU1, ubiquitin thioest 98.6 6.7E-08 2.3E-12 85.1 7.4 55 255-329 85-139 (212)
2 3pfy_A OTU domain-containing p 98.6 2.8E-07 9.6E-12 80.5 11.1 53 64-133 47-100 (185)
3 3phx_A RNA-directed RNA polyme 98.3 1.6E-06 5.4E-11 75.3 7.3 60 255-329 100-159 (185)
4 3phu_A RNA-directed RNA polyme 98.2 3.8E-06 1.3E-10 75.2 7.6 60 255-329 100-159 (219)
5 2zfy_A Ubiquitin thioesterase 88.6 0.65 2.2E-05 41.2 5.7 59 254-328 175-233 (234)
6 1tff_A Ubiquitin thiolesterase 88.6 0.39 1.3E-05 42.8 4.2 59 254-329 172-230 (234)
7 4dhi_B Ubiquitin thioesterase 83.2 1.8 6.3E-05 40.4 6.0 66 254-332 210-276 (284)
8 4ddg_A Ubiquitin-conjugating e 58.6 11 0.00038 35.5 5.0 59 254-328 340-398 (399)
9 3fm5_A Transcriptional regulat 51.9 37 0.0013 25.7 6.1 76 64-159 72-148 (150)
10 4ddg_A Ubiquitin-conjugating e 49.3 5.5 0.00019 37.6 1.3 16 96-111 212-227 (399)
11 1tff_A Ubiquitin thiolesterase 49.1 5.8 0.0002 35.2 1.3 14 96-109 44-57 (234)
12 2d9s_A CBL E3 ubiquitin protei 47.0 11 0.00036 28.1 2.2 23 179-201 7-29 (53)
13 2ooa_A E3 ubiquitin-protein li 45.1 13 0.00044 27.6 2.4 23 179-201 9-31 (52)
14 4gof_A Small glutamine-rich te 44.1 6.6 0.00023 28.7 0.8 13 259-271 31-43 (52)
15 2oo9_A E3 ubiquitin-protein li 42.4 14 0.00047 26.9 2.2 23 179-201 2-24 (46)
16 2zfy_A Ubiquitin thioesterase 42.2 8.5 0.00029 34.0 1.3 13 96-108 47-59 (234)
17 3e6m_A MARR family transcripti 41.0 1.2E+02 0.0041 23.3 7.6 78 56-153 76-155 (161)
18 2q5z_A MAZG, hypothetical prot 38.1 14 0.00047 29.2 1.8 35 100-135 79-113 (114)
19 3zyw_A Glutaredoxin-3; metal b 36.8 12 0.0004 28.8 1.2 17 302-318 13-32 (111)
20 3cra_A Protein MAZG; tandem-re 36.4 32 0.0011 31.9 4.2 36 99-135 195-230 (265)
21 1uxc_A FRUR (1-57), fructose r 36.4 37 0.0013 24.5 3.7 35 124-158 14-52 (65)
22 2g9w_A Conserved hypothetical 36.3 84 0.0029 24.3 6.1 80 61-154 43-124 (138)
23 2g3q_A Protein YBL047C; endocy 36.2 24 0.00083 23.3 2.5 23 182-204 5-27 (43)
24 2hsg_A Glucose-resistance amyl 35.6 27 0.00091 29.6 3.3 34 124-157 16-50 (332)
25 2lxb_A Small glutamine-rich te 35.4 11 0.00037 29.4 0.8 13 259-271 36-48 (74)
26 2fbh_A Transcriptional regulat 35.4 85 0.0029 23.1 5.7 72 62-153 68-140 (146)
27 3ech_A MEXR, multidrug resista 35.0 1E+02 0.0034 23.0 6.1 71 63-153 68-139 (142)
28 3nqo_A MARR-family transcripti 34.8 1.3E+02 0.0045 24.1 7.2 77 58-154 68-146 (189)
29 4asv_A Small glutamine-rich te 34.4 11 0.00039 30.5 0.8 13 259-271 48-60 (92)
30 1z96_A DNA-damage, UBA-domain 33.8 33 0.0011 21.8 2.8 23 181-203 4-26 (40)
31 1qpz_A PURA, protein (purine n 33.7 35 0.0012 29.0 3.8 34 124-157 14-48 (340)
32 3dkb_A Tumor necrosis factor, 32.7 29 0.001 34.2 3.4 62 258-331 212-284 (390)
33 3eco_A MEPR; mutlidrug efflux 32.0 1.5E+02 0.0052 21.8 7.0 71 63-153 64-135 (139)
34 2gta_A Hypothetical protein YP 31.7 13 0.00045 29.4 0.7 35 100-135 67-101 (119)
35 2rdp_A Putative transcriptiona 30.5 70 0.0024 23.9 4.6 72 62-153 72-144 (150)
36 3bja_A Transcriptional regulat 30.1 83 0.0028 23.0 4.8 71 63-153 64-135 (139)
37 3deu_A Transcriptional regulat 29.7 98 0.0033 24.3 5.5 70 64-153 86-156 (166)
38 3tgn_A ADC operon repressor AD 29.5 98 0.0034 22.9 5.2 72 62-153 67-142 (146)
39 3dxo_A Uncharacterized snoal-l 29.5 36 0.0012 25.7 2.8 55 124-190 6-60 (121)
40 2wul_A Glutaredoxin related pr 29.4 12 0.00041 30.2 0.1 13 302-314 17-29 (118)
41 3k0l_A Repressor protein; heli 28.7 2E+02 0.0067 22.0 7.3 70 64-153 78-148 (162)
42 2l8n_A Transcriptional repress 28.7 27 0.00094 25.3 1.9 35 124-158 23-58 (67)
43 3oop_A LIN2960 protein; protei 28.4 1.8E+02 0.0062 21.5 7.2 71 63-153 68-139 (143)
44 3ek3_A Nitroreductase; YP_2117 28.2 5.1 0.00017 32.2 -2.3 41 123-167 13-55 (190)
45 2qww_A Transcriptional regulat 28.1 67 0.0023 24.2 4.1 71 63-153 72-147 (154)
46 1ku9_A Hypothetical protein MJ 28.0 1.1E+02 0.0037 22.4 5.1 77 62-152 57-133 (152)
47 2hr3_A Probable transcriptiona 27.4 1.9E+02 0.0064 21.4 6.5 70 63-152 67-138 (147)
48 2eth_A Transcriptional regulat 27.3 1.2E+02 0.004 23.0 5.4 71 63-153 75-146 (154)
49 3cjn_A Transcriptional regulat 26.8 2.1E+02 0.0071 21.7 7.2 71 63-153 83-154 (162)
50 2av4_A Thioredoxin-like protei 26.2 72 0.0025 27.4 4.4 56 259-325 60-119 (160)
51 3nrv_A Putative transcriptiona 25.8 1.4E+02 0.0049 22.2 5.6 71 63-153 71-142 (148)
52 3bro_A Transcriptional regulat 25.4 1.4E+02 0.0047 21.9 5.3 72 62-153 66-138 (141)
53 2ekk_A UBA domain from E3 ubiq 25.1 53 0.0018 22.1 2.8 23 182-204 10-32 (47)
54 3zrh_A Ubiquitin thioesterase 25.1 51 0.0018 33.0 3.7 64 64-132 162-228 (454)
55 2juj_A E3 ubiquitin-protein li 24.9 46 0.0016 25.1 2.6 23 179-201 5-27 (56)
56 3jw4_A Transcriptional regulat 24.7 1.4E+02 0.0049 22.3 5.4 70 64-153 75-145 (148)
57 3kjx_A Transcriptional regulat 24.6 52 0.0018 28.0 3.3 33 125-157 25-58 (344)
58 2nnn_A Probable transcriptiona 24.3 66 0.0023 23.5 3.4 71 62-152 68-139 (140)
59 1lj9_A Transcriptional regulat 24.0 1.4E+02 0.005 21.9 5.3 71 62-152 59-130 (144)
60 2xsa_A Ogoga, hyaluronoglucosa 23.7 23 0.00079 35.1 1.0 55 138-193 53-107 (447)
61 3g3z_A NMB1585, transcriptiona 23.3 88 0.003 23.3 4.0 70 63-152 62-132 (145)
62 2fa5_A Transcriptional regulat 23.2 74 0.0025 24.1 3.6 71 63-153 80-151 (162)
63 3hk4_A MLR7391 protein; NTF2-l 22.9 37 0.0013 27.0 1.9 28 124-157 23-50 (136)
64 2c8m_A Lipoate-protein ligase 22.6 77 0.0026 27.6 4.0 38 116-153 204-247 (262)
65 1ixs_A Holliday junction DNA h 22.5 60 0.0021 23.6 2.8 28 176-203 12-39 (62)
66 1sd4_A Penicillinase repressor 22.4 83 0.0028 23.3 3.6 82 61-153 43-124 (126)
67 2pbl_A Putative esterase/lipas 22.1 67 0.0023 25.4 3.2 28 303-330 61-88 (262)
68 3u2r_A Regulatory protein MARR 22.0 91 0.0031 24.1 3.9 72 63-154 79-151 (168)
69 1jgs_A Multiple antibiotic res 22.0 2.3E+02 0.008 20.6 7.2 72 63-153 65-137 (138)
70 1vg5_A RSGI RUH-014, rhomboid 21.7 50 0.0017 25.1 2.3 27 177-203 25-51 (73)
71 3h5t_A Transcriptional regulat 21.3 75 0.0026 27.3 3.6 34 124-157 23-58 (366)
72 2dak_A Ubiquitin carboxyl-term 21.2 68 0.0023 23.0 2.8 25 181-205 9-33 (63)
73 2o20_A Catabolite control prot 21.1 20 0.00069 30.4 0.0 35 123-157 18-53 (332)
74 2a3q_A Hypothetical protein; M 20.9 60 0.0021 27.6 2.9 37 99-136 95-131 (170)
75 3h4o_A Nitroreductase family p 20.9 9.4 0.00032 31.6 -2.1 41 123-167 28-70 (191)
76 3s2w_A Transcriptional regulat 20.9 2.8E+02 0.0095 21.0 6.8 71 63-153 81-152 (159)
77 3e39_A Putative nitroreductase 20.7 13 0.00043 29.9 -1.3 41 123-167 14-56 (178)
78 2gxg_A 146AA long hypothetical 20.5 2E+02 0.007 21.1 5.5 71 62-152 66-137 (146)
79 3cdh_A Transcriptional regulat 20.5 97 0.0033 23.4 3.7 71 63-153 74-145 (155)
80 3bpv_A Transcriptional regulat 20.3 2.5E+02 0.0087 20.3 6.0 72 62-153 59-131 (138)
No 1
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A
Probab=98.61 E-value=6.7e-08 Score=85.08 Aligned_cols=55 Identities=22% Similarity=0.413 Sum_probs=42.5
Q ss_pred cccchhhhhhhhhhhcceEEEEEecCCcccccCCCeEEeecCCCCCCCCCCCEEEEeecccccCCCCCCcccccc
Q 019215 255 AFGDDIAIECLATEFNREIYVVQAHGSDAMVDEENCVFFLPHRPRSDICEPPIFLFMKGTGWCGAGADHYEPLIA 329 (344)
Q Consensus 255 AfGDDiaIE~LATefkReIyVVqahg~damvdeencvFFLPHrPR~ei~~~P~FLfMkgTgWcgaGaDHYEPlia 329 (344)
.|||.|-|-+||.-|+++|.|++..++ ....|=|.. ..+|++|.-. +-||..|.-
T Consensus 85 ~WGg~iEL~Als~~~~~~I~V~~~~~~-------~~~~~~~~~-----~~~~I~L~Y~--------g~HYdsl~~ 139 (212)
T 3by4_A 85 SWGGAIEIGIISDALAVAIYVVDIDAV-------KIEKFNEDK-----FDNYILILFN--------GIHYDSLTM 139 (212)
T ss_dssp SCCCHHHHHHHHHHHTCEEEEEETTTT-------EEEEESTTT-----CSEEEEEEEC--------SSCEEEEEE
T ss_pred EEccHHHHHHHHHHHCCCEEEEECCCC-------CeEEeCCCC-----CCCeEEEEEc--------CCcceEEec
Confidence 799999999999999999999998532 344553321 4678999874 279999865
No 2
>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*
Probab=98.60 E-value=2.8e-07 Score=80.46 Aligned_cols=53 Identities=21% Similarity=0.395 Sum_probs=41.4
Q ss_pred HHHHHHH-hhcCccccCCCCCCcceEEEeccCcccCCCCCchhHHHHHHhccCCCChHHHHHHHHHHHHHH
Q 019215 64 RRHLERL-HSKGVLWKHPEDQSRSIVFKLSHGGEVSADGNCLFTASQKAMTARDVDARELRRRTVRRFLED 133 (344)
Q Consensus 64 r~~L~rl-~~~GV~wk~p~~~~~~~vf~L~hggeV~~dGnCLFtA~~~am~~~~~~~relR~r~vrrF~~~ 133 (344)
+..++.| ..+|..=+. |.+||||||.|+...|........+||+.++....++
T Consensus 47 ~~~~~~l~~~~gL~~~~-----------------I~~DGnCLFrAia~qL~g~~~~h~~LR~~vv~yi~~n 100 (185)
T 3pfy_A 47 HWFEKALRDKKGFIIKQ-----------------MKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKN 100 (185)
T ss_dssp HHHHHHHHHHHCCEEEC-----------------CCCSTTHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCcEEEe-----------------eCCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Confidence 3344445 677776554 7899999999999999876777899999999877665
No 3
>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A
Probab=98.27 E-value=1.6e-06 Score=75.26 Aligned_cols=60 Identities=22% Similarity=0.302 Sum_probs=41.2
Q ss_pred cccchhhhhhhhhhhcceEEEEEecCCcccccCCCeEEeecCCCCCCCCCCCEEEEeecccccCCCCCCcccccc
Q 019215 255 AFGDDIAIECLATEFNREIYVVQAHGSDAMVDEENCVFFLPHRPRSDICEPPIFLFMKGTGWCGAGADHYEPLIA 329 (344)
Q Consensus 255 AfGDDiaIE~LATefkReIyVVqahg~damvdeencvFFLPHrPR~ei~~~P~FLfMkgTgWcgaGaDHYEPlia 329 (344)
.||++|.|-+||..|+++|.|.|+.+... -.+.+-|=|.. ...|++|... |.-||++|-.
T Consensus 100 ~WGg~iEL~Als~~~~v~I~V~~~d~~~~---~~~i~~f~~~~-----~~~~I~L~Y~-------g~~HYdsl~~ 159 (185)
T 3phx_A 100 EWGSTLEASMLAKEMGITIIIWTVAASDE---VEAGIKFGDGD-----VFTAVNLLHS-------GQTHFDALRI 159 (185)
T ss_dssp CCCBHHHHHHHHHHHCCCEEEEEC--CCB---CCEEEEESSCC-----TTTSEEEEEE-------TTTEEEEEEE
T ss_pred ccCcHHHHHHHHHHHCCcEEEEEecCCCC---ceEEEEcCCCC-----CCCEEEEEEC-------CCcCchhceE
Confidence 69999999999999999999998764321 01233343322 2678888873 4579999853
No 4
>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}
Probab=98.16 E-value=3.8e-06 Score=75.24 Aligned_cols=60 Identities=22% Similarity=0.292 Sum_probs=42.1
Q ss_pred cccchhhhhhhhhhhcceEEEEEecCCcccccCCCeEEeecCCCCCCCCCCCEEEEeecccccCCCCCCcccccc
Q 019215 255 AFGDDIAIECLATEFNREIYVVQAHGSDAMVDEENCVFFLPHRPRSDICEPPIFLFMKGTGWCGAGADHYEPLIA 329 (344)
Q Consensus 255 AfGDDiaIE~LATefkReIyVVqahg~damvdeencvFFLPHrPR~ei~~~P~FLfMkgTgWcgaGaDHYEPlia 329 (344)
.||++|.|-+||.-|+++|.|.|+.+... -.+.+-|=|..+ ..|++|.-. |.-||++|-.
T Consensus 100 ~WGG~iEL~AlS~~~~v~I~V~~~d~~g~---~~~i~~fge~~~-----~~~I~L~Y~-------g~~HYdSL~~ 159 (219)
T 3phu_A 100 EWGSTLEASMLAKEMGITIIIWTVAASDE---VEAGIKFGDGDV-----FTAVNLLHS-------GQTHFDALRI 159 (219)
T ss_dssp CCCCHHHHHHHHHHTTCCEEEEEESSSSB---EEEEEEESSCCT-----TTSEEEEEE-------TTTEEEEEEE
T ss_pred ccCCHHHHHHHHHHhCCCEEEEEecCCCC---ceeEEEecCCCC-----CCeEEEEEC-------CCcCchhheE
Confidence 69999999999999999999998874411 011233333322 578888763 4579999854
No 5
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A
Probab=88.57 E-value=0.65 Score=41.16 Aligned_cols=59 Identities=29% Similarity=0.443 Sum_probs=41.9
Q ss_pred ccccchhhhhhhhhhhcceEEEEEecCCcccccCCCeEEeecCCCCCCCCCCCEEEEeecccccCCCCCCccccc
Q 019215 254 AAFGDDIAIECLATEFNREIYVVQAHGSDAMVDEENCVFFLPHRPRSDICEPPIFLFMKGTGWCGAGADHYEPLI 328 (344)
Q Consensus 254 aAfGDDiaIE~LATefkReIyVVqahg~damvdeencvFFLPHrPR~ei~~~P~FLfMkgTgWcgaGaDHYEPli 328 (344)
..|||.|.|-+||..++..|-|+|+.|+.+- +-+.-.| |.. ..|++.|+-+. | ||.-|.
T Consensus 175 ~~~~~~i~i~ALa~al~v~I~V~~~d~~~~~--~v~~~~f-~~~-----~~p~I~LlY~p------g--HYdiLy 233 (234)
T 2zfy_A 175 CKESDHIHIIALAQALSVSIQVEYMDRGEGG--TTNPHIF-PEG-----SEPKVYLLYRP------G--HYDILY 233 (234)
T ss_dssp TCCCCHHHHHHHHHHHTCCEEEEECC-CCSS--CCEEEEE-STT-----CCCSEEEEEET------T--EEEEEE
T ss_pred hhcCCHHHHHHHHHHhCCCEEEEEcCCCCCC--cccceeC-CCC-----CCCeEEEEECC------C--CcccCC
Confidence 3799999999999999999999999988531 1122223 331 35789998884 3 998764
No 6
>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11
Probab=88.56 E-value=0.39 Score=42.78 Aligned_cols=59 Identities=29% Similarity=0.423 Sum_probs=40.4
Q ss_pred ccccchhhhhhhhhhhcceEEEEEecCCcccccCCCeEEeecCCCCCCCCCCCEEEEeecccccCCCCCCcccccc
Q 019215 254 AAFGDDIAIECLATEFNREIYVVQAHGSDAMVDEENCVFFLPHRPRSDICEPPIFLFMKGTGWCGAGADHYEPLIA 329 (344)
Q Consensus 254 aAfGDDiaIE~LATefkReIyVVqahg~damvdeencvFFLPHrPR~ei~~~P~FLfMkgTgWcgaGaDHYEPlia 329 (344)
..|||.|.|-+||..++-.|-|+|+.|+. ++-+.--| |. -..|.++|+-++ | ||.-|.-
T Consensus 172 ~~~~~~iei~ALa~aL~v~I~V~~~d~~~---~~~~~~~~-~~-----~~~~~I~LlY~p------g--HYdily~ 230 (234)
T 1tff_A 172 ATECDHIQITALSQALSIALQVEYVDEMD---TALNHHVF-PE-----AATPSVYLLYKT------S--HYNILYA 230 (234)
T ss_dssp TCCCCHHHHHHHHHHHTCCEEEEECC----------CCCC-CC-----CSSCSEEEEEET------T--EEEEEEE
T ss_pred hcccccHHHHHHHHHhCCCEEEEEcCCCC---CccccccC-CC-----CCCCeEEEEECC------C--Cceeccc
Confidence 47999999999999999999999998874 22222122 22 235779999883 2 9998764
No 7
>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A
Probab=83.23 E-value=1.8 Score=40.36 Aligned_cols=66 Identities=18% Similarity=0.289 Sum_probs=48.0
Q ss_pred ccccchhhhhhhhhhhcceEEEEEecCCcccccCCCeEE-eecCCCCCCCCCCCEEEEeecccccCCCCCCccccccccc
Q 019215 254 AAFGDDIAIECLATEFNREIYVVQAHGSDAMVDEENCVF-FLPHRPRSDICEPPIFLFMKGTGWCGAGADHYEPLIANAC 332 (344)
Q Consensus 254 aAfGDDiaIE~LATefkReIyVVqahg~damvdeencvF-FLPHrPR~ei~~~P~FLfMkgTgWcgaGaDHYEPlia~~~ 332 (344)
+.|||.|.|-+||..++-.|-|++..++.+- +-|... | |... .-..|.++|+-|+ | ||+.|...+.
T Consensus 210 ~~e~d~leI~ALa~aL~v~I~V~ylDrs~g~--~v~~h~~f-p~~~--~~~~p~I~LLYrp-g-------HYDILY~~~p 276 (284)
T 4dhi_B 210 WKDADHLAINSLIKAAGTRVRIEYMDRTAAP--NGGWHYDI-PSDD--QQIAPEITLLYRP-G-------HYDVIYKKDS 276 (284)
T ss_dssp TCCCCHHHHHHHHHHTTCCEEEEESSGGGCT--TSSSEEEE-SCCC--SCCCCSEEEEEET-T-------EEEEEEECC-
T ss_pred hhcccHHHHHHHHHHhCCcEEEEEecCCCCC--CCcccccC-CCCC--CCCCCEEEEeecC-C-------CccccccCCC
Confidence 4799999999999999999999999987432 334433 5 6532 1133679999987 4 9998865543
No 8
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=58.62 E-value=11 Score=35.53 Aligned_cols=59 Identities=29% Similarity=0.444 Sum_probs=41.6
Q ss_pred ccccchhhhhhhhhhhcceEEEEEecCCcccccCCCeEEeecCCCCCCCCCCCEEEEeecccccCCCCCCccccc
Q 019215 254 AAFGDDIAIECLATEFNREIYVVQAHGSDAMVDEENCVFFLPHRPRSDICEPPIFLFMKGTGWCGAGADHYEPLI 328 (344)
Q Consensus 254 aAfGDDiaIE~LATefkReIyVVqahg~damvdeencvFFLPHrPR~ei~~~P~FLfMkgTgWcgaGaDHYEPli 328 (344)
..|||+|.|-+||..++=.|-|++..|+.+. +-+..-| |... .+.++|+-|- | ||.-|.
T Consensus 340 ~~e~d~l~I~ALa~al~v~I~V~yld~~~~~--~v~~~~~-~~~~-----~~~I~LLYrP-g-------HYDiLY 398 (399)
T 4ddg_A 340 CKESDHIHIIALAQALSVSIQVEYMDRGEGG--TTNPHIF-PEGS-----EPKVYLLYRP-G-------HYDILY 398 (399)
T ss_dssp TCCBCHHHHHHHHHHHTCCCEEEECSCCSSS--CCCEEET-TTTC-----CCCCEEEEET-B-------EEEEEE
T ss_pred HhhCcHHHHHHHHHHcCCcEEEEEcCCCCCC--ccceeeC-CCCC-----CCEEEEEEcC-C-------ccccCC
Confidence 4799999999999999999999999886432 2233333 4432 4566777654 1 998764
No 9
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=51.92 E-value=37 Score=25.67 Aligned_cols=76 Identities=9% Similarity=0.218 Sum_probs=42.8
Q ss_pred HHHHHHHhhcCccccCCC-CCCcceEEEeccCcccCCCCCchhHHHHHHhccCCCChHHHHHHHHHHHHHHhccCChhhH
Q 019215 64 RRHLERLHSKGVLWKHPE-DQSRSIVFKLSHGGEVSADGNCLFTASQKAMTARDVDARELRRRTVRRFLEDLGSVGEGQR 142 (344)
Q Consensus 64 r~~L~rl~~~GV~wk~p~-~~~~~~vf~L~hggeV~~dGnCLFtA~~~am~~~~~~~relR~r~vrrF~~~~~s~~~ee~ 142 (344)
-+.|.+|+++|..-+.++ ...+.+.++|.=-| ++++ .+++...-+.+.+.+...+++|+
T Consensus 72 s~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G-------------~~~~-------~~~~~~~~~~~~~~~~~l~~~e~ 131 (150)
T 3fm5_A 72 VGLVDELEERGLVVRTLDPSDRRNKLIAATEEG-------------RRLR-------DDAKARVDAAHGRYFEGIPDTVV 131 (150)
T ss_dssp HHHHHHHHTTTSEEC-----------CEECHHH-------------HHHH-------HHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHCCCEEeeCCccccchheeeECHHH-------------HHHH-------HHHHHHHHHHHHHHHhcCCHHHH
Confidence 578899999999887665 23355555543211 1111 23444444455566778899999
Q ss_pred HHHHHHHHhccccCCCC
Q 019215 143 EMINDAIRHMYSPDLKN 159 (344)
Q Consensus 143 e~Id~aIrhlY~PdLk~ 159 (344)
+.+.+.++.++...+..
T Consensus 132 ~~l~~~L~~l~~~~~~e 148 (150)
T 3fm5_A 132 NQMRDTLQSIAFPTFVE 148 (150)
T ss_dssp HHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHhccCCC
Confidence 99999999998775543
No 10
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=49.33 E-value=5.5 Score=37.59 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=13.7
Q ss_pred ccCCCCCchhHHHHHH
Q 019215 96 EVSADGNCLFTASQKA 111 (344)
Q Consensus 96 eV~~dGnCLFtA~~~a 111 (344)
.|-.||||+|+|.-=+
T Consensus 212 ~vrgDGNCFYRAf~f~ 227 (399)
T 4ddg_A 212 KTRPDGNSFYRAFGFS 227 (399)
T ss_dssp CBCCSSCHHHHHHHHH
T ss_pred eecCCCchHHHHHHHH
Confidence 7899999999998643
No 11
>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11
Probab=49.07 E-value=5.8 Score=35.24 Aligned_cols=14 Identities=29% Similarity=0.643 Sum_probs=12.3
Q ss_pred ccCCCCCchhHHHH
Q 019215 96 EVSADGNCLFTASQ 109 (344)
Q Consensus 96 eV~~dGnCLFtA~~ 109 (344)
.|-.||||.|+|..
T Consensus 44 ~vRgDGNCFYRAf~ 57 (234)
T 1tff_A 44 KTKGDRNCFYRALG 57 (234)
T ss_dssp CBCCSSCHHHHHHH
T ss_pred ecCCCccHHHHHHH
Confidence 58899999999965
No 12
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=46.98 E-value=11 Score=28.08 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=19.2
Q ss_pred hhhHHHHHHHHHhhhhhhHHHHH
Q 019215 179 VGLDSAIDELVQLGMQREMAAES 201 (344)
Q Consensus 179 ~~Ldaai~Elv~~Gmqre~AAEs 201 (344)
+.++++|+.|+..|++|+.|...
T Consensus 7 ~~~e~~I~~L~~lGF~r~~ai~A 29 (53)
T 2d9s_A 7 GQLSSEIERLMSQGYSYQDIQKA 29 (53)
T ss_dssp SCSHHHHHHHHHHTCCHHHHHHH
T ss_pred cchHHHHHHHHHcCCCHHHHHHH
Confidence 45678899999999999988654
No 13
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=45.10 E-value=13 Score=27.56 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=18.4
Q ss_pred hhhHHHHHHHHHhhhhhhHHHHH
Q 019215 179 VGLDSAIDELVQLGMQREMAAES 201 (344)
Q Consensus 179 ~~Ldaai~Elv~~Gmqre~AAEs 201 (344)
..++++|+.|+..|++|+.|...
T Consensus 9 ~~~~~~Ia~Lm~mGFsr~~ai~A 31 (52)
T 2ooa_A 9 ENVDAKIAKLMGEGYAFEEVKRA 31 (52)
T ss_dssp --CHHHHHHHHHTTCCHHHHHHH
T ss_pred CChHHHHHHHHHcCCCHHHHHHH
Confidence 35678999999999999988654
No 14
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=44.12 E-value=6.6 Score=28.74 Aligned_cols=13 Identities=46% Similarity=0.956 Sum_probs=11.4
Q ss_pred hhhhhhhhhhhcc
Q 019215 259 DIAIECLATEFNR 271 (344)
Q Consensus 259 DiaIE~LATefkR 271 (344)
++||+||++.|+=
T Consensus 31 eVAiqCi~~aF~v 43 (52)
T 4gof_A 31 EVAIQCLETAFGV 43 (52)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCC
Confidence 7899999999973
No 15
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=42.44 E-value=14 Score=26.90 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=19.2
Q ss_pred hhhHHHHHHHHHhhhhhhHHHHH
Q 019215 179 VGLDSAIDELVQLGMQREMAAES 201 (344)
Q Consensus 179 ~~Ldaai~Elv~~Gmqre~AAEs 201 (344)
.+|+++|+-|+..|++|+.|-..
T Consensus 2 ~~~e~~I~~L~s~Gf~~~~~~rA 24 (46)
T 2oo9_A 2 SQLSSEIENLMSQGYSYQDIQKA 24 (46)
T ss_dssp CHHHHHHHHHHHTTBCHHHHHHH
T ss_pred cchHHHHHHHHHcCCCHHHHHHH
Confidence 36899999999999999876543
No 16
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A
Probab=42.22 E-value=8.5 Score=34.00 Aligned_cols=13 Identities=38% Similarity=0.882 Sum_probs=11.6
Q ss_pred ccCCCCCchhHHH
Q 019215 96 EVSADGNCLFTAS 108 (344)
Q Consensus 96 eV~~dGnCLFtA~ 108 (344)
.|-.||||.|+|.
T Consensus 47 ~vRgDGNCFyRaf 59 (234)
T 2zfy_A 47 KTRPDGNCFYRAF 59 (234)
T ss_dssp CBCCSSCHHHHHH
T ss_pred eccCCccHHHHHH
Confidence 6889999999994
No 17
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=41.00 E-value=1.2e+02 Score=23.27 Aligned_cols=78 Identities=15% Similarity=0.219 Sum_probs=47.0
Q ss_pred eccchHH-HHHHHHHHhhcCccccCCC-CCCcceEEEeccCcccCCCCCchhHHHHHHhccCCCChHHHHHHHHHHHHHH
Q 019215 56 VIGLEEQ-QRRHLERLHSKGVLWKHPE-DQSRSIVFKLSHGGEVSADGNCLFTASQKAMTARDVDARELRRRTVRRFLED 133 (344)
Q Consensus 56 V~gld~q-qr~~L~rl~~~GV~wk~p~-~~~~~~vf~L~hggeV~~dGnCLFtA~~~am~~~~~~~relR~r~vrrF~~~ 133 (344)
..|++.+ --+.|.+|+++|..-+.++ ...+.+.+.|.--|. +++ .+++...-+.+.+.
T Consensus 76 ~l~~~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~-------------~~~-------~~~~~~~~~~~~~~ 135 (161)
T 3e6m_A 76 LGVMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGK-------------KKL-------AEISPLINDFHAEL 135 (161)
T ss_dssp HTTCCHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHH-------------HHH-------HHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHH-------------HHH-------HHHHHHHHHHHHHH
Confidence 3444443 3567899999998887766 334666666653221 111 23344444455556
Q ss_pred hccCChhhHHHHHHHHHhcc
Q 019215 134 LGSVGEGQREMINDAIRHMY 153 (344)
Q Consensus 134 ~~s~~~ee~e~Id~aIrhlY 153 (344)
+...+++|++.+.+.++.+.
T Consensus 136 ~~~l~~~e~~~l~~~L~~l~ 155 (161)
T 3e6m_A 136 VGNVDPDKLQTCIEVLGEIL 155 (161)
T ss_dssp HTTCCHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHH
Confidence 67789999998888777654
No 18
>2q5z_A MAZG, hypothetical protein; NTP-ppase, hydrolase; 2.30A {Vibrio SP}
Probab=38.12 E-value=14 Score=29.18 Aligned_cols=35 Identities=11% Similarity=-0.058 Sum_probs=31.0
Q ss_pred CCCchhHHHHHHhccCCCChHHHHHHHHHHHHHHhc
Q 019215 100 DGNCLFTASQKAMTARDVDARELRRRTVRRFLEDLG 135 (344)
Q Consensus 100 dGnCLFtA~~~am~~~~~~~relR~r~vrrF~~~~~ 135 (344)
-|+|||..+..|-.. .+|+.+.=+++.+.|...|.
T Consensus 79 LgDvL~~l~~LA~~l-giDle~al~~k~~K~~~RyP 113 (114)
T 2q5z_A 79 LYDVLYYVCALANIH-GVNLEKTRELKEVLNKVKYN 113 (114)
T ss_dssp HHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHHH-CcCHHHHHHHHHHHHHHhCC
Confidence 499999999999888 99999999999999988773
No 19
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=36.85 E-value=12 Score=28.80 Aligned_cols=17 Identities=53% Similarity=0.960 Sum_probs=14.2
Q ss_pred CCCCCEEEEeecc---cccC
Q 019215 302 ICEPPIFLFMKGT---GWCG 318 (344)
Q Consensus 302 i~~~P~FLfMkgT---gWcg 318 (344)
|...|+.|||||| -||+
T Consensus 13 i~~~~Vvlf~kg~~~~~~Cp 32 (111)
T 3zyw_A 13 THAAPCMLFMKGTPQEPRCG 32 (111)
T ss_dssp HTSSSEEEEESBCSSSBSSH
T ss_pred HhcCCEEEEEecCCCCCcch
Confidence 5778999999998 6775
No 20
>3cra_A Protein MAZG; tandem-repeat domain, hydrolase; 2.10A {Escherichia coli} PDB: 3crc_A*
Probab=36.43 E-value=32 Score=31.86 Aligned_cols=36 Identities=17% Similarity=0.202 Sum_probs=32.3
Q ss_pred CCCCchhHHHHHHhccCCCChHHHHHHHHHHHHHHhc
Q 019215 99 ADGNCLFTASQKAMTARDVDARELRRRTVRRFLEDLG 135 (344)
Q Consensus 99 ~dGnCLFtA~~~am~~~~~~~relR~r~vrrF~~~~~ 135 (344)
.-|++||+.+..|-.. ++||++-=+++.++|...|.
T Consensus 195 ElGDlLFalVnlAR~~-gIDpE~ALr~an~KF~~Rf~ 230 (265)
T 3cra_A 195 EMGDLLFATVNLARHL-GTKAEIALQKANEKFERRFR 230 (265)
T ss_dssp HHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHH
Confidence 4599999999998877 99999999999999999887
No 21
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=36.37 E-value=37 Score=24.45 Aligned_cols=35 Identities=20% Similarity=0.334 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhc---cCChhhHHHHHHHHHhc-cccCCC
Q 019215 124 RRTVRRFLEDLG---SVGEGQREMINDAIRHM-YSPDLK 158 (344)
Q Consensus 124 ~r~vrrF~~~~~---s~~~ee~e~Id~aIrhl-Y~PdLk 158 (344)
+.||-|++..-. .++++-+++|.++++.| |.|+..
T Consensus 14 ~sTVSrvLng~~~~~~vs~et~~rI~~aa~~lgY~pn~~ 52 (65)
T 1uxc_A 14 RTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAV 52 (65)
T ss_dssp HHHHHHHHHTCTTTTTCTTHHHHHHHHHHHHHTCCCC--
T ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHhCCCccHH
Confidence 578999998877 79999999999999865 888754
No 22
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=36.34 E-value=84 Score=24.32 Aligned_cols=80 Identities=15% Similarity=0.229 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhhcCccccCCCCCCcceEEEe--ccCcccCCCCCchhHHHHHHhccCCCChHHHHHHHHHHHHHHhccCC
Q 019215 61 EQQRRHLERLHSKGVLWKHPEDQSRSIVFKL--SHGGEVSADGNCLFTASQKAMTARDVDARELRRRTVRRFLEDLGSVG 138 (344)
Q Consensus 61 ~qqr~~L~rl~~~GV~wk~p~~~~~~~vf~L--~hggeV~~dGnCLFtA~~~am~~~~~~~relR~r~vrrF~~~~~s~~ 138 (344)
..-.+.|.||+++|..=..++ .+..+|.+ .-+| .+...++..+.. -+ -.......+.+|++ .++
T Consensus 43 ~Tvt~~l~rLe~kGlv~r~~~--~r~~~~~~~lt~~~-------~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~---~ls 108 (138)
T 2g9w_A 43 TTVMAVLQRLAKKNLVLQIRD--DRAHRYAPVHGRDE-------LVAGLMVDALAQ-AE-DSGSRQAALVHFVE---RVG 108 (138)
T ss_dssp HHHHHHHHHHHHTTSEEEEC-----CCEEEESSCHHH-------HHHHHHHHHHTT-SS-SHHHHHHHHHHHHH---HSC
T ss_pred HHHHHHHHHHHHCCCEEEEec--CCeEEEEeCCCHHH-------HHHHHHHHHHHH-Hh-hCCCHHHHHHHHHH---hCC
Confidence 345788999999999887764 24556653 2222 222333333310 00 12234445566655 578
Q ss_pred hhhHHHHHHHHHhccc
Q 019215 139 EGQREMINDAIRHMYS 154 (344)
Q Consensus 139 ~ee~e~Id~aIrhlY~ 154 (344)
++|++.+.+.++.+..
T Consensus 109 ~eE~~~L~~lL~~~~~ 124 (138)
T 2g9w_A 109 ADEADALRRALAELEA 124 (138)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999999988764
No 23
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=36.18 E-value=24 Score=23.31 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=19.1
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhh
Q 019215 182 DSAIDELVQLGMQREMAAESIYK 204 (344)
Q Consensus 182 daai~Elv~~Gmqre~AAEsIYk 204 (344)
+.+|+.|++.|++|+.|......
T Consensus 5 e~~i~~L~~MGF~~~~a~~AL~~ 27 (43)
T 2g3q_A 5 SLAVEELSGMGFTEEEAHNALEK 27 (43)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Confidence 46799999999999888776654
No 24
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=35.59 E-value=27 Score=29.62 Aligned_cols=34 Identities=24% Similarity=0.407 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHhc-cccCC
Q 019215 124 RRTVRRFLEDLGSVGEGQREMINDAIRHM-YSPDL 157 (344)
Q Consensus 124 ~r~vrrF~~~~~s~~~ee~e~Id~aIrhl-Y~PdL 157 (344)
.-||.|-+..-..++++-|++|.++++.| |.|..
T Consensus 16 ~~TVSrvln~~~~vs~~tr~rV~~aa~~lgY~pn~ 50 (332)
T 2hsg_A 16 MATVSRVVNGNPNVKPSTRKKVLETIERLGYRPNA 50 (332)
T ss_dssp HHHHHHHHTTCTTSCHHHHHHHHHHHHHHTCCSCH
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHCCCcCH
Confidence 46899999988889999999999999877 88873
No 25
>2lxb_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; four-helix bundle, protein-protein interaction, GET5 binding GET pathway; NMR {Saccharomyces cerevisiae} PDB: 2lxc_B
Probab=35.41 E-value=11 Score=29.40 Aligned_cols=13 Identities=23% Similarity=0.830 Sum_probs=11.4
Q ss_pred hhhhhhhhhhhcc
Q 019215 259 DIAIECLATEFNR 271 (344)
Q Consensus 259 DiaIE~LATefkR 271 (344)
++||+||++.|+=
T Consensus 36 eVAiqCI~~aF~v 48 (74)
T 2lxb_A 36 NVAMDCISEAFGF 48 (74)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCC
Confidence 6899999999973
No 26
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=35.39 E-value=85 Score=23.09 Aligned_cols=72 Identities=14% Similarity=0.238 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhcCccccCCC-CCCcceEEEeccCcccCCCCCchhHHHHHHhccCCCChHHHHHHHHHHHHHHhccCChh
Q 019215 62 QQRRHLERLHSKGVLWKHPE-DQSRSIVFKLSHGGEVSADGNCLFTASQKAMTARDVDARELRRRTVRRFLEDLGSVGEG 140 (344)
Q Consensus 62 qqr~~L~rl~~~GV~wk~p~-~~~~~~vf~L~hggeV~~dGnCLFtA~~~am~~~~~~~relR~r~vrrF~~~~~s~~~e 140 (344)
.-.+.|.+|+++|..-..++ .+.+...+.|.-- |.-++.. ++...-..+.+.+...+++
T Consensus 68 ~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~------G~~~~~~--------------~~~~~~~~~~~~~~~l~~~ 127 (146)
T 2fbh_A 68 TLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPK------ADVLIAD--------------IEAIAASVRNDVLTGIDES 127 (146)
T ss_dssp HHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTT------HHHHHHH--------------HHHHHHHHHHHHTTTCCHH
T ss_pred hHHHHHHHHHHCCCeeecCCCcccCeeeeEECHh------HHHHHHH--------------HHHHHHHHHHHHHcCCCHH
Confidence 34578999999998877665 3346666666433 3222222 2222223334455677889
Q ss_pred hHHHHHHHHHhcc
Q 019215 141 QREMINDAIRHMY 153 (344)
Q Consensus 141 e~e~Id~aIrhlY 153 (344)
|++.+.+.++.+.
T Consensus 128 e~~~l~~~l~~l~ 140 (146)
T 2fbh_A 128 EQALCQQVLLRIL 140 (146)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9988888777653
No 27
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=34.99 E-value=1e+02 Score=23.03 Aligned_cols=71 Identities=10% Similarity=0.101 Sum_probs=40.2
Q ss_pred HHHHHHHHhhcCccccCCCC-CCcceEEEeccCcccCCCCCchhHHHHHHhccCCCChHHHHHHHHHHHHHHhccCChhh
Q 019215 63 QRRHLERLHSKGVLWKHPED-QSRSIVFKLSHGGEVSADGNCLFTASQKAMTARDVDARELRRRTVRRFLEDLGSVGEGQ 141 (344)
Q Consensus 63 qr~~L~rl~~~GV~wk~p~~-~~~~~vf~L~hggeV~~dGnCLFtA~~~am~~~~~~~relR~r~vrrF~~~~~s~~~ee 141 (344)
--+.|.+|+++|..-+.++. ..+.+.++|.=- -++.+ .+++....+.+.+.+...+++|
T Consensus 68 vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~-------------G~~~~-------~~~~~~~~~~~~~~~~~l~~~e 127 (142)
T 3ech_A 68 ITRKIRELEGRNLVRRERNPSDQRSFQLFLTDE-------------GLAIH-------LHAELIMSRVHDELFAPLTPVE 127 (142)
T ss_dssp HHHHHHHHHHTTSEEC----------CCEECHH-------------HHHHH-------HHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHCCCEeeccCCCCCCeeeeEECHH-------------HHHHH-------HHHHHHHHHHHHHHHhcCCHHH
Confidence 35789999999998877652 234444444311 11221 2344444444555567789999
Q ss_pred HHHHHHHHHhcc
Q 019215 142 REMINDAIRHMY 153 (344)
Q Consensus 142 ~e~Id~aIrhlY 153 (344)
++.+.+.++.+.
T Consensus 128 ~~~l~~~l~~l~ 139 (142)
T 3ech_A 128 QATLVHLLDQCL 139 (142)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998888765
No 28
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=34.76 E-value=1.3e+02 Score=24.13 Aligned_cols=77 Identities=21% Similarity=0.311 Sum_probs=50.1
Q ss_pred cchHH-HHHHHHHHhhcCccccCCC-CCCcceEEEeccCcccCCCCCchhHHHHHHhccCCCChHHHHHHHHHHHHHHhc
Q 019215 58 GLEEQ-QRRHLERLHSKGVLWKHPE-DQSRSIVFKLSHGGEVSADGNCLFTASQKAMTARDVDARELRRRTVRRFLEDLG 135 (344)
Q Consensus 58 gld~q-qr~~L~rl~~~GV~wk~p~-~~~~~~vf~L~hggeV~~dGnCLFtA~~~am~~~~~~~relR~r~vrrF~~~~~ 135 (344)
|++.+ --+.|.+|+++|..-+.++ ...+.+.++|.=-| ++.+ .+++....+.+...+.
T Consensus 68 ~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G-------------~~~~-------~~~~~~~~~~~~~~~~ 127 (189)
T 3nqo_A 68 GTSKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLG-------------KKVM-------VTCSRTGINFMADVFH 127 (189)
T ss_dssp TSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHH-------------HHHH-------HHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHH-------------HHHH-------HHHHHHHHHHHHHHHH
Confidence 44433 3478999999999887665 33466666654111 1111 2344444555566678
Q ss_pred cCChhhHHHHHHHHHhccc
Q 019215 136 SVGEGQREMINDAIRHMYS 154 (344)
Q Consensus 136 s~~~ee~e~Id~aIrhlY~ 154 (344)
.++++|++.+.+.++.++.
T Consensus 128 ~l~~ee~~~l~~~L~~l~~ 146 (189)
T 3nqo_A 128 EFTKDELETLWSLLKKMYR 146 (189)
T ss_dssp TCCHHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHHHHH
Confidence 8899999999999888774
No 29
>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A
Probab=34.43 E-value=11 Score=30.51 Aligned_cols=13 Identities=23% Similarity=0.830 Sum_probs=11.4
Q ss_pred hhhhhhhhhhhcc
Q 019215 259 DIAIECLATEFNR 271 (344)
Q Consensus 259 DiaIE~LATefkR 271 (344)
++||+||++.|+=
T Consensus 48 EVAIqCI~~AF~V 60 (92)
T 4asv_A 48 NVAMDCISEAFGF 60 (92)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCC
Confidence 7899999999973
No 30
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=33.81 E-value=33 Score=21.77 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=18.4
Q ss_pred hHHHHHHHHHhhhhhhHHHHHHh
Q 019215 181 LDSAIDELVQLGMQREMAAESIY 203 (344)
Q Consensus 181 Ldaai~Elv~~Gmqre~AAEsIY 203 (344)
.+.+|+.|++.|.+++.|.....
T Consensus 4 ~~~~i~~L~~mGf~~~~a~~AL~ 26 (40)
T 1z96_A 4 LNSKIAQLVSMGFDPLEAAQALD 26 (40)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHH
Confidence 45689999999999988866543
No 31
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=33.73 E-value=35 Score=29.04 Aligned_cols=34 Identities=29% Similarity=0.443 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHhc-cccCC
Q 019215 124 RRTVRRFLEDLGSVGEGQREMINDAIRHM-YSPDL 157 (344)
Q Consensus 124 ~r~vrrF~~~~~s~~~ee~e~Id~aIrhl-Y~PdL 157 (344)
.-||.|-+..-..++++-|++|.++++.| |.|..
T Consensus 14 ~~TVSrvLn~~~~vs~~tr~rV~~~a~~lgY~pn~ 48 (340)
T 1qpz_A 14 TTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSA 48 (340)
T ss_dssp HHHHHHHHHTCSCCCHHHHHHHHHHHHHHTCCCCH
T ss_pred HHHHHHHHcCcCCCCHHHHHHHHHHHHHhCCCCCH
Confidence 46899999988889999999999999876 88874
No 32
>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A
Probab=32.68 E-value=29 Score=34.17 Aligned_cols=62 Identities=31% Similarity=0.523 Sum_probs=40.8
Q ss_pred chhhhhhhhhhhcceEEEEEecCCcccccC-C-C--------eEEeecCCCCCCCCC-CCEEEEeecccccCCCCCCccc
Q 019215 258 DDIAIECLATEFNREIYVVQAHGSDAMVDE-E-N--------CVFFLPHRPRSDICE-PPIFLFMKGTGWCGAGADHYEP 326 (344)
Q Consensus 258 DDiaIE~LATefkReIyVVqahg~damvde-e-n--------cvFFLPHrPR~ei~~-~P~FLfMkgTgWcgaGaDHYEP 326 (344)
..|=|=+||---+|.|.|+- |.|+-. + + -=+|||=.--.+.|. .|++| ||.- =||-|
T Consensus 212 EeiHIFvLAhVLRRPIIV~~----d~~lr~~~~Ge~~~Pi~f~GIYLPLlwpp~~C~rsPI~L-----gY~s---~HFsa 279 (390)
T 3dkb_A 212 EEIHIFVLCNILRRPIIVIS----DKMLRSLESGSNFAPLKVGGIYLPLHWPAQECYRYPIVL-----GYDS---HHFVP 279 (390)
T ss_dssp CHHHHHHHHHHTTSCEEEEE----CCCCTTCCCC----CCCCCEEECCTTSCTTSSCSSCEEE-----EECS---SCEEE
T ss_pred HHHHHHHHHHHhcCCEEEEe----chhhccccCCCccCcCccCceecCCcCCHHHccCCceEE-----Eecc---Cceee
Confidence 46888899999999999995 223221 1 1 137899754445554 89988 3332 28888
Q ss_pred ccccc
Q 019215 327 LIANA 331 (344)
Q Consensus 327 lia~~ 331 (344)
|+.-.
T Consensus 280 LV~me 284 (390)
T 3dkb_A 280 LVTLK 284 (390)
T ss_dssp EEEBC
T ss_pred eeecc
Confidence 87743
No 33
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=31.96 E-value=1.5e+02 Score=21.76 Aligned_cols=71 Identities=14% Similarity=0.194 Sum_probs=43.8
Q ss_pred HHHHHHHHhhcCccccCCC-CCCcceEEEeccCcccCCCCCchhHHHHHHhccCCCChHHHHHHHHHHHHHHhccCChhh
Q 019215 63 QRRHLERLHSKGVLWKHPE-DQSRSIVFKLSHGGEVSADGNCLFTASQKAMTARDVDARELRRRTVRRFLEDLGSVGEGQ 141 (344)
Q Consensus 63 qr~~L~rl~~~GV~wk~p~-~~~~~~vf~L~hggeV~~dGnCLFtA~~~am~~~~~~~relR~r~vrrF~~~~~s~~~ee 141 (344)
--+.|.+|+++|..-+-++ ...+.+.++|.--| ++.+ .+++...-..+.+.+..++++|
T Consensus 64 vs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G-------------~~~~-------~~~~~~~~~~~~~~~~~l~~~e 123 (139)
T 3eco_A 64 VSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSG-------------IKLV-------EAFTSIFDEMEQTLVSQLSEEE 123 (139)
T ss_dssp HHHHHHHHHHTTSEEEEECCC--CCEEEEECHHH-------------HHHH-------HHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHH-------------HHHH-------HHHHHHHHHHHHHHHhcCCHHH
Confidence 4578999999999877655 23355666554222 1111 2334444444555567789999
Q ss_pred HHHHHHHHHhcc
Q 019215 142 REMINDAIRHMY 153 (344)
Q Consensus 142 ~e~Id~aIrhlY 153 (344)
++.+.+.++.+.
T Consensus 124 ~~~l~~~l~~l~ 135 (139)
T 3eco_A 124 NEQMKANLTKML 135 (139)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999888877653
No 34
>2gta_A Hypothetical protein YPJD; pyrophosphatase, NESG, structural genomics, PSI, protein structure initiative; 2.90A {Bacillus subtilis} SCOP: a.204.1.2
Probab=31.73 E-value=13 Score=29.43 Aligned_cols=35 Identities=23% Similarity=0.269 Sum_probs=29.6
Q ss_pred CCCchhHHHHHHhccCCCChHHHHHHHHHHHHHHhc
Q 019215 100 DGNCLFTASQKAMTARDVDARELRRRTVRRFLEDLG 135 (344)
Q Consensus 100 dGnCLFtA~~~am~~~~~~~relR~r~vrrF~~~~~ 135 (344)
=|+|||..+..|-.+ ++|+.++=+++.++|...|.
T Consensus 67 LGDvLf~lv~lA~~l-~idle~al~~~~~K~~~R~p 101 (119)
T 2gta_A 67 IGDVLFVLVCLANSL-DISLEEAHDRVMHKFNTRDK 101 (119)
T ss_dssp HHHHHHHHHHHHHTT-TCCHHHHHHHHHHHSCC---
T ss_pred HHHHHHHHHHHHHHH-CcCHHHHHHHHHHHHHHhCC
Confidence 499999999999877 89999999999999988885
No 35
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=30.53 E-value=70 Score=23.88 Aligned_cols=72 Identities=14% Similarity=0.301 Sum_probs=41.6
Q ss_pred HHHHHHHHHhhcCccccCCC-CCCcceEEEeccCcccCCCCCchhHHHHHHhccCCCChHHHHHHHHHHHHHHhccCChh
Q 019215 62 QQRRHLERLHSKGVLWKHPE-DQSRSIVFKLSHGGEVSADGNCLFTASQKAMTARDVDARELRRRTVRRFLEDLGSVGEG 140 (344)
Q Consensus 62 qqr~~L~rl~~~GV~wk~p~-~~~~~~vf~L~hggeV~~dGnCLFtA~~~am~~~~~~~relR~r~vrrF~~~~~s~~~e 140 (344)
.--+.|.+|+++|..-..++ ...+.+.++|.--| .=++. +++....+.+...+...+++
T Consensus 72 tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G------~~~~~--------------~~~~~~~~~~~~~~~~l~~~ 131 (150)
T 2rdp_A 72 TTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKG------ERIIE--------------EVIEKRQRDLANVLESFSDE 131 (150)
T ss_dssp HHHHHHHHHHHTTSEEEEECCC---CEEEEECHHH------HHHHH--------------HHHHHHHHHHHHHGGGSCHH
T ss_pred hHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhH------HHHHH--------------HHHHHHHHHHHHHHHcCCHH
Confidence 34568999999998766543 23355666554322 22221 22333333344456778899
Q ss_pred hHHHHHHHHHhcc
Q 019215 141 QREMINDAIRHMY 153 (344)
Q Consensus 141 e~e~Id~aIrhlY 153 (344)
|++.+.+.++.+.
T Consensus 132 e~~~l~~~l~~l~ 144 (150)
T 2rdp_A 132 EIVVFERCLRKLH 144 (150)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9998888877664
No 36
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=30.12 E-value=83 Score=22.96 Aligned_cols=71 Identities=11% Similarity=0.227 Sum_probs=41.9
Q ss_pred HHHHHHHHhhcCccccCCC-CCCcceEEEeccCcccCCCCCchhHHHHHHhccCCCChHHHHHHHHHHHHHHhccCChhh
Q 019215 63 QRRHLERLHSKGVLWKHPE-DQSRSIVFKLSHGGEVSADGNCLFTASQKAMTARDVDARELRRRTVRRFLEDLGSVGEGQ 141 (344)
Q Consensus 63 qr~~L~rl~~~GV~wk~p~-~~~~~~vf~L~hggeV~~dGnCLFtA~~~am~~~~~~~relR~r~vrrF~~~~~s~~~ee 141 (344)
-.+.|.+|+++|..-+.++ ...+...++|.--| .-++ ..++....+.+...++..+++|
T Consensus 64 vs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G------~~~~--------------~~~~~~~~~~~~~~~~~l~~~e 123 (139)
T 3bja_A 64 MTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKG------EETK--------------KQVDVQYSDFLKENCGCFTKEE 123 (139)
T ss_dssp HHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHH------HHHH--------------HHHHHHHHHHHHHHHCCSCHHH
T ss_pred HHHHHHHHHHCCCeeeccCCCCCceeEEEECHHH------HHHH--------------HHHHHHHHHHHHHHHhcCCHHH
Confidence 3568999999998766544 23355555554322 1111 1233333334444557788999
Q ss_pred HHHHHHHHHhcc
Q 019215 142 REMINDAIRHMY 153 (344)
Q Consensus 142 ~e~Id~aIrhlY 153 (344)
++.+.+.++.+.
T Consensus 124 ~~~l~~~l~~l~ 135 (139)
T 3bja_A 124 EGILEDLLLKWK 135 (139)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 988888777653
No 37
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=29.68 E-value=98 Score=24.31 Aligned_cols=70 Identities=20% Similarity=0.283 Sum_probs=39.5
Q ss_pred HHHHHHHhhcCccccCCC-CCCcceEEEeccCcccCCCCCchhHHHHHHhccCCCChHHHHHHHHHHHHHHhccCChhhH
Q 019215 64 RRHLERLHSKGVLWKHPE-DQSRSIVFKLSHGGEVSADGNCLFTASQKAMTARDVDARELRRRTVRRFLEDLGSVGEGQR 142 (344)
Q Consensus 64 r~~L~rl~~~GV~wk~p~-~~~~~~vf~L~hggeV~~dGnCLFtA~~~am~~~~~~~relR~r~vrrF~~~~~s~~~ee~ 142 (344)
-+.|.+|+++|..-+.++ ...+.+.++|.= .|.=++. +++...-+.+.+.+..++++|+
T Consensus 86 s~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~------~G~~~~~--------------~~~~~~~~~~~~~~~~l~~~e~ 145 (166)
T 3deu_A 86 VRTLDQLEDKGLISRQTCASDRRAKRIKLTE------KAEPLIA--------------EMEEVIHKTRGEILAGISSEEI 145 (166)
T ss_dssp HHHHHHHHHTTSEEEC--------CEEEECG------GGHHHHH--------------HHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHCCCEEeeCCCCCCCeeEEEECH------HHHHHHH--------------HHHHHHHHHHHHHHcCCCHHHH
Confidence 467889999998887765 234666666643 3322222 2233333344455667888998
Q ss_pred HHHHHHHHhcc
Q 019215 143 EMINDAIRHMY 153 (344)
Q Consensus 143 e~Id~aIrhlY 153 (344)
+.+.+.++.+.
T Consensus 146 ~~l~~~L~~l~ 156 (166)
T 3deu_A 146 ELLIKLIAKLE 156 (166)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88887776653
No 38
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=29.52 E-value=98 Score=22.93 Aligned_cols=72 Identities=13% Similarity=0.225 Sum_probs=40.2
Q ss_pred HHHHHHHHHhhcCccccCCC-CCCcceEEEeccCcccCCCCCchhHHHHHHhccCCCChHHHH---HHHHHHHHHHhccC
Q 019215 62 QQRRHLERLHSKGVLWKHPE-DQSRSIVFKLSHGGEVSADGNCLFTASQKAMTARDVDARELR---RRTVRRFLEDLGSV 137 (344)
Q Consensus 62 qqr~~L~rl~~~GV~wk~p~-~~~~~~vf~L~hggeV~~dGnCLFtA~~~am~~~~~~~relR---~r~vrrF~~~~~s~ 137 (344)
.-.++|.+|+++|..-+.++ ...+.+.++|.=-| .=++. .++ ......+...+...
T Consensus 67 tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g------~~~~~--------------~~~~~~~~~~~~~~~~~~~l 126 (146)
T 3tgn_A 67 AVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLA------RPIAE--------------EHHHHHEHTLLTYEQVATQF 126 (146)
T ss_dssp HHHHHHHHHHHTTSEEC----------CCEECGGG------HHHHH--------------HHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhH------HHHHH--------------HHHHHHHHHHHHHHHHHHhC
Confidence 34679999999999887765 23455666654322 21111 122 33334445556777
Q ss_pred ChhhHHHHHHHHHhcc
Q 019215 138 GEGQREMINDAIRHMY 153 (344)
Q Consensus 138 ~~ee~e~Id~aIrhlY 153 (344)
+++|++.+.+.++.+.
T Consensus 127 ~~~e~~~l~~~l~~l~ 142 (146)
T 3tgn_A 127 TPNEQKVIQRFLTALV 142 (146)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 8999998888877664
No 39
>3dxo_A Uncharacterized snoal-like protein; putative isomerase of the snoal-like family; HET: MSE PGE; 2.70A {Agrobacterium tumefaciens str} SCOP: d.17.4.19
Probab=29.50 E-value=36 Score=25.71 Aligned_cols=55 Identities=11% Similarity=0.198 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHhccccCCCCcceeeEEEEEEeeeeccchhhhHHHHHHHHH
Q 019215 124 RRTVRRFLEDLGSVGEGQREMINDAIRHMYSPDLKNGWGIHVVQEVKLLAKKEDRVGLDSAIDELVQ 190 (344)
Q Consensus 124 ~r~vrrF~~~~~s~~~ee~e~Id~aIrhlY~PdLk~GWGVhvVQevKlLA~k~dr~~Ldaai~Elv~ 190 (344)
+.+++||++-|++.+.+.+ -++|..+|+||..-=.=+ .+..-|+++.+.+..+.+
T Consensus 6 ~~~v~ry~~aw~~~d~~~~---~~~l~~l~a~D~~~~dP~---------~~~~G~~ai~~~~~~~~~ 60 (121)
T 3dxo_A 6 LTIAQTYLAAWNEEDNERR---RHLVGQAWAENTRYVDPL---------MQGEGQQGIAAMIEAARQ 60 (121)
T ss_dssp HHHHHHHHHHHHCSCHHHH---HHHHHHHEEEEEEEECSS---------CEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHH---HHHHHHhcCCCeEEECCC---------CCcCCHHHHHHHHHHHHH
Confidence 4578999999997766432 256888999996432111 124566777776666543
No 40
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=29.37 E-value=12 Score=30.22 Aligned_cols=13 Identities=31% Similarity=0.700 Sum_probs=11.3
Q ss_pred CCCCCEEEEeecc
Q 019215 302 ICEPPIFLFMKGT 314 (344)
Q Consensus 302 i~~~P~FLfMkgT 314 (344)
|.+.|+.+|||||
T Consensus 17 i~~~~VvvF~Kgt 29 (118)
T 2wul_A 17 VKKDKVVVFLKGT 29 (118)
T ss_dssp HHHSSEEEEESBC
T ss_pred HhcCCEEEEEcCC
Confidence 5668999999997
No 41
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=28.72 E-value=2e+02 Score=22.04 Aligned_cols=70 Identities=17% Similarity=0.248 Sum_probs=40.9
Q ss_pred HHHHHHHhhcCccccCCC-CCCcceEEEeccCcccCCCCCchhHHHHHHhccCCCChHHHHHHHHHHHHHHhccCChhhH
Q 019215 64 RRHLERLHSKGVLWKHPE-DQSRSIVFKLSHGGEVSADGNCLFTASQKAMTARDVDARELRRRTVRRFLEDLGSVGEGQR 142 (344)
Q Consensus 64 r~~L~rl~~~GV~wk~p~-~~~~~~vf~L~hggeV~~dGnCLFtA~~~am~~~~~~~relR~r~vrrF~~~~~s~~~ee~ 142 (344)
-+.|.+|+++|..-+.++ ...+.+.++|.=-| ++.+ .+++......+.+.+...+++|+
T Consensus 78 s~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G-------------~~~~-------~~~~~~~~~~~~~~~~~l~~~e~ 137 (162)
T 3k0l_A 78 NKILQDLLANGWIEKAPDPTHGRRILVTVTPSG-------------LDKL-------NQCNQVVQQLEAQMLQGVDINLA 137 (162)
T ss_dssp HHHHHHHHHTTSEEEEECCSSSCCEEEEECHHH-------------HHHH-------HHHHHHHHHHHHHHTTTSCHHHH
T ss_pred HHHHHHHHHCcCeEecCCCCcCCeeEeEECHhH-------------HHHH-------HHHHHHHHHHHHHHHhCCCHHHH
Confidence 467788888887776655 33355566554222 1111 23333333444455677788888
Q ss_pred HHHHHHHHhcc
Q 019215 143 EMINDAIRHMY 153 (344)
Q Consensus 143 e~Id~aIrhlY 153 (344)
+.+.+.++.+.
T Consensus 138 ~~l~~~L~~l~ 148 (162)
T 3k0l_A 138 FLIRNNLELMV 148 (162)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88877776654
No 42
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=28.69 E-value=27 Score=25.31 Aligned_cols=35 Identities=29% Similarity=0.407 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHhc-cccCCC
Q 019215 124 RRTVRRFLEDLGSVGEGQREMINDAIRHM-YSPDLK 158 (344)
Q Consensus 124 ~r~vrrF~~~~~s~~~ee~e~Id~aIrhl-Y~PdLk 158 (344)
+.||-|.+..-..++++-+++|.++++.| |.|+..
T Consensus 23 ~sTVSr~ln~~~~vs~~t~~rV~~~a~~lgY~pn~~ 58 (67)
T 2l8n_A 23 TATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPM 58 (67)
T ss_dssp HHHHHHTTTCCCCSCHHHHHHHHHHHHHHCCCC---
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCCccHH
Confidence 56888888877778999999999999877 878754
No 43
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=28.45 E-value=1.8e+02 Score=21.53 Aligned_cols=71 Identities=17% Similarity=0.234 Sum_probs=44.9
Q ss_pred HHHHHHHHhhcCccccCCC-CCCcceEEEeccCcccCCCCCchhHHHHHHhccCCCChHHHHHHHHHHHHHHhccCChhh
Q 019215 63 QRRHLERLHSKGVLWKHPE-DQSRSIVFKLSHGGEVSADGNCLFTASQKAMTARDVDARELRRRTVRRFLEDLGSVGEGQ 141 (344)
Q Consensus 63 qr~~L~rl~~~GV~wk~p~-~~~~~~vf~L~hggeV~~dGnCLFtA~~~am~~~~~~~relR~r~vrrF~~~~~s~~~ee 141 (344)
--+.|.+|+++|..-+.++ ...+.+.++|.=-| ++.+ .+++...-+.+.+.+..++++|
T Consensus 68 vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G-------------~~~~-------~~~~~~~~~~~~~~~~~l~~~e 127 (143)
T 3oop_A 68 VNRIVDVLLRKELIVREISTEDRRISLLSLTDKG-------------RKET-------TELRDIVEASCEKMFAGVTRTD 127 (143)
T ss_dssp HHHHHHHHHHTTSEEEEC----CCSCEEEECHHH-------------HHHH-------HHHHHHHHHHHHHHTTTCCHHH
T ss_pred HHHHHHHHHHCCCeeccCCCccCceeeeeECHHH-------------HHHH-------HHHHHHHHHHHHHHHcCCCHHH
Confidence 3578999999999887665 33456666653222 1121 2344444555566677889999
Q ss_pred HHHHHHHHHhcc
Q 019215 142 REMINDAIRHMY 153 (344)
Q Consensus 142 ~e~Id~aIrhlY 153 (344)
++.+.+.++.+.
T Consensus 128 ~~~l~~~L~~l~ 139 (143)
T 3oop_A 128 LEQFTAILKNIS 139 (143)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999888877653
No 44
>3ek3_A Nitroreductase; YP_211706.1, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: FMN MPD; 1.70A {Bacteroides fragilis nctc 9343}
Probab=28.19 E-value=5.1 Score=32.20 Aligned_cols=41 Identities=24% Similarity=0.373 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHHHHHhccccCCCC--cceeeEEE
Q 019215 123 RRRTVRRFLEDLGSVGEGQREMINDAIRHMYSPDLKN--GWGIHVVQ 167 (344)
Q Consensus 123 R~r~vrrF~~~~~s~~~ee~e~Id~aIrhlY~PdLk~--GWGVhvVQ 167 (344)
+||++|+|.+ ..++.++.+.|-++. .++|+-.| .|.+.||+
T Consensus 13 ~RrSiR~f~~--~~v~~e~l~~il~aa--~~APs~~n~qpw~f~vv~ 55 (190)
T 3ek3_A 13 ARRSVRAYDR--KQIPADDLNAILEAG--AYAPSGMHYETWHFTAVC 55 (190)
T ss_dssp HCCBCCCBCS--CCCCHHHHHHHHHHH--HTSCCGGGCCCCEEEEEC
T ss_pred hchhhhcCCC--CCCCHHHHHHHHHHH--HhCCCcCCCCCeEEEEEE
Confidence 5678898864 467777777777776 48888766 68777775
No 45
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=28.13 E-value=67 Score=24.17 Aligned_cols=71 Identities=18% Similarity=0.231 Sum_probs=41.6
Q ss_pred HHHHHHHHhhcCcccc--CCC-CCCcceEEEeccCcccCCCCCchhHHHHHHhccCCCChHHHHHH--HHHHHHHHhccC
Q 019215 63 QRRHLERLHSKGVLWK--HPE-DQSRSIVFKLSHGGEVSADGNCLFTASQKAMTARDVDARELRRR--TVRRFLEDLGSV 137 (344)
Q Consensus 63 qr~~L~rl~~~GV~wk--~p~-~~~~~~vf~L~hggeV~~dGnCLFtA~~~am~~~~~~~relR~r--~vrrF~~~~~s~ 137 (344)
--+.|.+|+++|..-+ .++ .+.+.+.++|.--|. =++. + ++.. ..+.+.+.+...
T Consensus 72 vs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~------~~~~---~-----------~~~~~~~~~~~~~~~~~l 131 (154)
T 2qww_A 72 AAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGE------DLSK---R-----------STANAFMYKAMMKVFENL 131 (154)
T ss_dssp HHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHH------HHHH---H-----------HHSCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHH------HHHH---H-----------HHhhHHHHHHHHHHHhcC
Confidence 4568999999998877 554 344666776653332 1111 1 1111 122333445677
Q ss_pred ChhhHHHHHHHHHhcc
Q 019215 138 GEGQREMINDAIRHMY 153 (344)
Q Consensus 138 ~~ee~e~Id~aIrhlY 153 (344)
+++|++.+.+.++.+.
T Consensus 132 ~~~e~~~l~~~l~~l~ 147 (154)
T 2qww_A 132 TENEIEELIRLNKKVE 147 (154)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 8999998888877664
No 46
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=27.97 E-value=1.1e+02 Score=22.45 Aligned_cols=77 Identities=17% Similarity=0.227 Sum_probs=39.1
Q ss_pred HHHHHHHHHhhcCccccCCCCCCcceEEEeccCcccCCCCCchhHHHHHHhccCCCChHHHHHHHHHHHHHHhccCChhh
Q 019215 62 QQRRHLERLHSKGVLWKHPEDQSRSIVFKLSHGGEVSADGNCLFTASQKAMTARDVDARELRRRTVRRFLEDLGSVGEGQ 141 (344)
Q Consensus 62 qqr~~L~rl~~~GV~wk~p~~~~~~~vf~L~hggeV~~dGnCLFtA~~~am~~~~~~~relR~r~vrrF~~~~~s~~~ee 141 (344)
.-.++|.+|+++|..-+.++...+. .|.+.--| +........ ....+.......+.+.+...++++
T Consensus 57 tvs~~l~~L~~~G~v~r~~~~~d~r-~~~~~~~~---------~~~~~~~~~----~~~~~~~~~~~~l~~l~~~~~~~~ 122 (152)
T 1ku9_A 57 NVSMSLKKLEELGFVRKVWIKGERK-NYYEAVDG---------FSSIKDIAK----RKHDLIAKTYEDLKKLEEKCNEEE 122 (152)
T ss_dssp HHHHHHHHHHHTTSEEEECCTTCSS-CEEEECCH---------HHHHHHHHH----HHHHHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHCCCEEEEecCCCce-EEEeecch---------HHHHHHHHH----HHHHHHHHHHHHHHHHHHhcCchh
Confidence 4568899999999987765422222 23332111 011111110 112233333444555556667888
Q ss_pred HHHHHHHHHhc
Q 019215 142 REMINDAIRHM 152 (344)
Q Consensus 142 ~e~Id~aIrhl 152 (344)
++.+.+.++.+
T Consensus 123 ~~~l~~~l~~l 133 (152)
T 1ku9_A 123 KEFIKQKIKGI 133 (152)
T ss_dssp HHHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 88777555443
No 47
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=27.36 E-value=1.9e+02 Score=21.37 Aligned_cols=70 Identities=17% Similarity=0.281 Sum_probs=38.0
Q ss_pred HHHHHHHHhhcCccccCCC-CCCcceEEEeccCcccCCCCCchhHHHHHHhccCCCChHHHHHHHHHHHHHHhc-cCChh
Q 019215 63 QRRHLERLHSKGVLWKHPE-DQSRSIVFKLSHGGEVSADGNCLFTASQKAMTARDVDARELRRRTVRRFLEDLG-SVGEG 140 (344)
Q Consensus 63 qr~~L~rl~~~GV~wk~p~-~~~~~~vf~L~hggeV~~dGnCLFtA~~~am~~~~~~~relR~r~vrrF~~~~~-s~~~e 140 (344)
-.+.|.+|+++|..-+.++ ...+.+.+.|.- .|.=++. +++...-+.+.+.+. ..+++
T Consensus 67 vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~------~G~~~~~--------------~~~~~~~~~~~~~~~~~l~~~ 126 (147)
T 2hr3_A 67 LAALLRELERGGLIVRHADPQDGRRTRVSLSS------EGRRNLY--------------GNRAKREEWLVRAMHACLDES 126 (147)
T ss_dssp HHHHHHHHHHTTSEEEEC------CCEEEECH------HHHHHHH--------------HHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHCCCEeeCCCCCCCCceeeEECH------HHHHHHH--------------HHHHHHHHHHHHHHHccCCHH
Confidence 4578999999998876655 233555565542 2221221 222222333344454 67889
Q ss_pred hHHHHHHHHHhc
Q 019215 141 QREMINDAIRHM 152 (344)
Q Consensus 141 e~e~Id~aIrhl 152 (344)
|++.+.+.++.+
T Consensus 127 e~~~l~~~l~~l 138 (147)
T 2hr3_A 127 ERALLAAAGPLL 138 (147)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 998888855443
No 48
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=27.28 E-value=1.2e+02 Score=23.05 Aligned_cols=71 Identities=14% Similarity=0.242 Sum_probs=41.3
Q ss_pred HHHHHHHHhhcCccccCCC-CCCcceEEEeccCcccCCCCCchhHHHHHHhccCCCChHHHHHHHHHHHHHHhccCChhh
Q 019215 63 QRRHLERLHSKGVLWKHPE-DQSRSIVFKLSHGGEVSADGNCLFTASQKAMTARDVDARELRRRTVRRFLEDLGSVGEGQ 141 (344)
Q Consensus 63 qr~~L~rl~~~GV~wk~p~-~~~~~~vf~L~hggeV~~dGnCLFtA~~~am~~~~~~~relR~r~vrrF~~~~~s~~~ee 141 (344)
--+.|.+|+++|..=+.++ ...+...++|.-- |.-++. +++......+.+.++.++++|
T Consensus 75 vs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~------G~~~~~--------------~~~~~~~~~~~~~~~~l~~ee 134 (154)
T 2eth_A 75 VTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEK------GKEIFG--------------EILSNFESLLKSVLEKFSEED 134 (154)
T ss_dssp HHHHHHHHHHTTSEEEEECTTTSSCEEEEECHH------HHHHHH--------------HHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHCCCEEeeCCCCCcceeEEEECHH------HHHHHH--------------HHHHHHHHHHHHHHhcCCHHH
Confidence 3568889999997765443 2335556655422 222221 223333334444566788999
Q ss_pred HHHHHHHHHhcc
Q 019215 142 REMINDAIRHMY 153 (344)
Q Consensus 142 ~e~Id~aIrhlY 153 (344)
++.+.+.++.+.
T Consensus 135 ~~~l~~~L~~l~ 146 (154)
T 2eth_A 135 FKVVSEGFNRMV 146 (154)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 988888777653
No 49
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=26.81 E-value=2.1e+02 Score=21.67 Aligned_cols=71 Identities=17% Similarity=0.289 Sum_probs=41.3
Q ss_pred HHHHHHHHhhcCccccCCC-CCCcceEEEeccCcccCCCCCchhHHHHHHhccCCCChHHHHHHHHHHHHHHhccCChhh
Q 019215 63 QRRHLERLHSKGVLWKHPE-DQSRSIVFKLSHGGEVSADGNCLFTASQKAMTARDVDARELRRRTVRRFLEDLGSVGEGQ 141 (344)
Q Consensus 63 qr~~L~rl~~~GV~wk~p~-~~~~~~vf~L~hggeV~~dGnCLFtA~~~am~~~~~~~relR~r~vrrF~~~~~s~~~ee 141 (344)
-.+.|.+|+++|..-+.++ ...+.+.++|.=- |.-++. +++......+...+..++++|
T Consensus 83 vs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~------G~~~~~--------------~~~~~~~~~~~~~~~~l~~~e 142 (162)
T 3cjn_A 83 LSRALDGLQADGLVRREVDSDDQRSSRVYLTPA------GRAVYD--------------RLWPHMRASHDRMFQGITPQE 142 (162)
T ss_dssp HHHHHHHHHHTTSEEEEEC--CCSSEEEEECHH------HHHHHH--------------HHHHHHHHHHHHHTTTCCHHH
T ss_pred HHHHHHHHHHCCCEEecCCCCCCCeeEEEECHH------HHHHHH--------------HHHHHHHHHHHHHHhcCCHHH
Confidence 4567888888888766544 2335555555422 222221 233333344455567788999
Q ss_pred HHHHHHHHHhcc
Q 019215 142 REMINDAIRHMY 153 (344)
Q Consensus 142 ~e~Id~aIrhlY 153 (344)
++.+.+.++.+.
T Consensus 143 ~~~l~~~l~~l~ 154 (162)
T 3cjn_A 143 RQAFLATLNKML 154 (162)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 988888776653
No 50
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}
Probab=26.21 E-value=72 Score=27.44 Aligned_cols=56 Identities=13% Similarity=0.181 Sum_probs=35.4
Q ss_pred hhhhhhhhhhhcceEEEEEecCCcccccCCCeEEeecCCCCCCCCCCCEEEEee-ccc---ccCCCCCCcc
Q 019215 259 DIAIECLATEFNREIYVVQAHGSDAMVDEENCVFFLPHRPRSDICEPPIFLFMK-GTG---WCGAGADHYE 325 (344)
Q Consensus 259 DiaIE~LATefkReIyVVqahg~damvdeencvFFLPHrPR~ei~~~P~FLfMk-gTg---WcgaGaDHYE 325 (344)
+-.+|-||.+|+..+-++.+- |||..-+ .-+-+|...|-|+|+| |.- +.|.| ||..
T Consensus 60 ~PvleelA~e~~~~v~f~kVD-----VDe~~e~-----a~~y~V~siPT~~fFk~G~~v~vd~Gtg-d~~k 119 (160)
T 2av4_A 60 DELLYKVADDIKNFCVIYLVD-----ITEVPDF-----NTMYELYDPVSVMFFYRNKHMMIDLGTG-NNNK 119 (160)
T ss_dssp HHHHHHHHHHHTTTEEEEEEE-----TTTCCTT-----TTTTTCCSSEEEEEEETTEEEEEECSSS-CCSC
T ss_pred HHHHHHHHHHccCCcEEEEEE-----CCCCHHH-----HHHcCCCCCCEEEEEECCEEEEEecCCC-CcCe
Confidence 356899999997655555554 4554321 2234577799997554 544 46777 7754
No 51
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=25.79 E-value=1.4e+02 Score=22.16 Aligned_cols=71 Identities=14% Similarity=0.190 Sum_probs=38.8
Q ss_pred HHHHHHHHhhcCccccCCCC-CCcceEEEeccCcccCCCCCchhHHHHHHhccCCCChHHHHHHHHHHHHHHhccCChhh
Q 019215 63 QRRHLERLHSKGVLWKHPED-QSRSIVFKLSHGGEVSADGNCLFTASQKAMTARDVDARELRRRTVRRFLEDLGSVGEGQ 141 (344)
Q Consensus 63 qr~~L~rl~~~GV~wk~p~~-~~~~~vf~L~hggeV~~dGnCLFtA~~~am~~~~~~~relR~r~vrrF~~~~~s~~~ee 141 (344)
--+.|.+|+++|..-+.++. ..+...++|.=-| ++.+ .+++......+.+.+...+++|
T Consensus 71 vs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G-------------~~~~-------~~~~~~~~~~~~~~~~~l~~~e 130 (148)
T 3nrv_A 71 VSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMG-------------QELY-------EVASDFAIEREKQLLEEFEEAE 130 (148)
T ss_dssp HHHHHHHHHHTTSEEC---------CCBEECHHH-------------HHHH-------HHHHHHTHHHHHHHTTTCCHHH
T ss_pred HHHHHHHHHHCCCEEeecCCCCcceeEeEECHhH-------------HHHH-------HHHHHHHHHHHHHHHHcCCHHH
Confidence 45788999999988776552 2244444443211 1111 2233334444555667788999
Q ss_pred HHHHHHHHHhcc
Q 019215 142 REMINDAIRHMY 153 (344)
Q Consensus 142 ~e~Id~aIrhlY 153 (344)
++.+.+.++.+.
T Consensus 131 ~~~l~~~l~~l~ 142 (148)
T 3nrv_A 131 KDQLFILLKKLR 142 (148)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 988888777653
No 52
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=25.42 E-value=1.4e+02 Score=21.91 Aligned_cols=72 Identities=14% Similarity=0.172 Sum_probs=42.9
Q ss_pred HHHHHHHHHhhcCccccCCC-CCCcceEEEeccCcccCCCCCchhHHHHHHhccCCCChHHHHHHHHHHHHHHhccCChh
Q 019215 62 QQRRHLERLHSKGVLWKHPE-DQSRSIVFKLSHGGEVSADGNCLFTASQKAMTARDVDARELRRRTVRRFLEDLGSVGEG 140 (344)
Q Consensus 62 qqr~~L~rl~~~GV~wk~p~-~~~~~~vf~L~hggeV~~dGnCLFtA~~~am~~~~~~~relR~r~vrrF~~~~~s~~~e 140 (344)
.-.+.|.+|+++|..=..++ ...+...+.|.--|. =++ ..++...-+.+...+...+++
T Consensus 66 tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~------~~~--------------~~~~~~~~~~~~~~~~~l~~~ 125 (141)
T 3bro_A 66 TATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKAN------KLE--------------TIILSYMDSDQSQMTSGLNKE 125 (141)
T ss_dssp HHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHH------TTH--------------HHHHHHHHHHHHHHTTTCCHH
T ss_pred hHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHH------HHH--------------HHHHHHHHHHHHHHHhcCCHH
Confidence 34678999999998766554 233555666643332 122 122222223333445677899
Q ss_pred hHHHHHHHHHhcc
Q 019215 141 QREMINDAIRHMY 153 (344)
Q Consensus 141 e~e~Id~aIrhlY 153 (344)
|++.+.+.++.+.
T Consensus 126 e~~~l~~~l~~l~ 138 (141)
T 3bro_A 126 EVVFLEKILKRMI 138 (141)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9998888887764
No 53
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.13 E-value=53 Score=22.14 Aligned_cols=23 Identities=26% Similarity=0.592 Sum_probs=19.5
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhh
Q 019215 182 DSAIDELVQLGMQREMAAESIYK 204 (344)
Q Consensus 182 daai~Elv~~Gmqre~AAEsIYk 204 (344)
+.+|+.|++.|++++.|...+..
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~ 32 (47)
T 2ekk_A 10 QQQLQQLMDMGFTREHAMEALLN 32 (47)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Confidence 56899999999999888777665
No 54
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=25.07 E-value=51 Score=33.04 Aligned_cols=64 Identities=19% Similarity=0.308 Sum_probs=39.1
Q ss_pred HHHHHHHhhc-C-ccccCCC-CCCcceEEEeccCcccCCCCCchhHHHHHHhccCCCChHHHHHHHHHHHHH
Q 019215 64 RRHLERLHSK-G-VLWKHPE-DQSRSIVFKLSHGGEVSADGNCLFTASQKAMTARDVDARELRRRTVRRFLE 132 (344)
Q Consensus 64 r~~L~rl~~~-G-V~wk~p~-~~~~~~vf~L~hggeV~~dGnCLFtA~~~am~~~~~~~relR~r~vrrF~~ 132 (344)
|...+.|++. + ..|-.-- ..-.+..|-|.- ..|||||..|.-++|=+ .-|-.-.=|+++...+.
T Consensus 162 r~~q~~LE~~~~~LNW~~e~~~~~~~rL~pL~t----~GDGNCLLHAvSqamWG-V~DrdlvLRkaL~~~L~ 228 (454)
T 3zrh_A 162 RDVQKELEEESPIINWSLELATRLDSRLYALWN----RTAGDCLLDSVLQATWG-IYDKDSVLRKALHDSLH 228 (454)
T ss_dssp HHHHHHHHTTSSSSSCCHHHHTTTCCCEEEBCC----CCSSCHHHHHHHHTTTS-SCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccchhhhccccccceeEeee----cCCCccHHHHHHHHhhc-ccCCcHHHHHHHHHHHH
Confidence 4445567775 7 5565411 111345777764 45899999999999966 55554444455544443
No 55
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=24.94 E-value=46 Score=25.07 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=19.6
Q ss_pred hhhHHHHHHHHHhhhhhhHHHHH
Q 019215 179 VGLDSAIDELVQLGMQREMAAES 201 (344)
Q Consensus 179 ~~Ldaai~Elv~~Gmqre~AAEs 201 (344)
..++++|+-|+..|++|+.|-..
T Consensus 5 ~p~e~~Ia~L~smGfsr~da~~A 27 (56)
T 2juj_A 5 PQLSSEIENLMSQGYSYQDIQKA 27 (56)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCChHHHHHHHHcCCCHHHHHHH
Confidence 45789999999999999987654
No 56
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=24.72 E-value=1.4e+02 Score=22.32 Aligned_cols=70 Identities=10% Similarity=0.110 Sum_probs=38.8
Q ss_pred HHHHHHHhhcCccccCCCC-CCcceEEEeccCcccCCCCCchhHHHHHHhccCCCChHHHHHHHHHHHHHHhccCChhhH
Q 019215 64 RRHLERLHSKGVLWKHPED-QSRSIVFKLSHGGEVSADGNCLFTASQKAMTARDVDARELRRRTVRRFLEDLGSVGEGQR 142 (344)
Q Consensus 64 r~~L~rl~~~GV~wk~p~~-~~~~~vf~L~hggeV~~dGnCLFtA~~~am~~~~~~~relR~r~vrrF~~~~~s~~~ee~ 142 (344)
-+.|.+|+++|..-+.++. ..+.+.+.|. +.| ++.+ .+++...-+.+.+.+..++++|+
T Consensus 75 s~~l~~L~~~Glv~r~~~~~DrR~~~~~LT------~~G-------~~~~-------~~~~~~~~~~~~~~~~~l~~~e~ 134 (148)
T 3jw4_A 75 TSMLQGLEKKGYIERRIPENNARQKNIYVL------PKG-------AALV-------EEFNNIFLEVEESITKGLTKDEQ 134 (148)
T ss_dssp HHHHHHHHHTTSBCCC--------CCCCBC------HHH-------HHHH-------HHHHHHHHHHHHHTTTTCCHHHH
T ss_pred HHHHHHHHHCCCEEeeCCCCCchhheeeEC------HHH-------HHHH-------HHHHHHHHHHHHHHHhcCCHHHH
Confidence 4678899999988776552 2233333332 111 1111 23444444455556677899999
Q ss_pred HHHHHHHHhcc
Q 019215 143 EMINDAIRHMY 153 (344)
Q Consensus 143 e~Id~aIrhlY 153 (344)
+.+.+.++.+.
T Consensus 135 ~~l~~~L~~l~ 145 (148)
T 3jw4_A 135 KQLMSILIKVN 145 (148)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99888877654
No 57
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=24.64 E-value=52 Score=28.03 Aligned_cols=33 Identities=30% Similarity=0.527 Sum_probs=28.9
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHHhc-cccCC
Q 019215 125 RTVRRFLEDLGSVGEGQREMINDAIRHM-YSPDL 157 (344)
Q Consensus 125 r~vrrF~~~~~s~~~ee~e~Id~aIrhl-Y~PdL 157 (344)
.||.|-+..-..++++-|++|.++++.| |.|..
T Consensus 25 ~TVSr~Ln~~~~vs~~tr~rV~~~~~~lgY~pn~ 58 (344)
T 3kjx_A 25 MTVSRVLRNRGDVSDATRARVLAAAKELGYVPNK 58 (344)
T ss_dssp HHHHHHHTTCSCCCHHHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHhCCCCCH
Confidence 5899999999999999999999999865 77764
No 58
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=24.29 E-value=66 Score=23.52 Aligned_cols=71 Identities=14% Similarity=0.251 Sum_probs=42.1
Q ss_pred HHHHHHHHHhhcCccccCCCC-CCcceEEEeccCcccCCCCCchhHHHHHHhccCCCChHHHHHHHHHHHHHHhccCChh
Q 019215 62 QQRRHLERLHSKGVLWKHPED-QSRSIVFKLSHGGEVSADGNCLFTASQKAMTARDVDARELRRRTVRRFLEDLGSVGEG 140 (344)
Q Consensus 62 qqr~~L~rl~~~GV~wk~p~~-~~~~~vf~L~hggeV~~dGnCLFtA~~~am~~~~~~~relR~r~vrrF~~~~~s~~~e 140 (344)
.--+.|.+|+++|..-+.++. ..+...+.|.-- |.=++. +++...-..+...+...+++
T Consensus 68 tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~------G~~~~~--------------~~~~~~~~~~~~~~~~l~~~ 127 (140)
T 2nnn_A 68 TIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPA------GRAELE--------------AGLAAAREINRQALAPLSLQ 127 (140)
T ss_dssp HHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHH------HHHHHH--------------HHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHh------HHHHHH--------------HHHHHHHHHHHHHHhcCCHH
Confidence 345789999999987765442 234555555422 221221 22333333344456677899
Q ss_pred hHHHHHHHHHhc
Q 019215 141 QREMINDAIRHM 152 (344)
Q Consensus 141 e~e~Id~aIrhl 152 (344)
|++.+.+.++.+
T Consensus 128 e~~~l~~~l~~l 139 (140)
T 2nnn_A 128 EQETLRGLLARL 139 (140)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 999999888765
No 59
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=24.04 E-value=1.4e+02 Score=21.92 Aligned_cols=71 Identities=14% Similarity=0.277 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhcCccccCCCC-CCcceEEEeccCcccCCCCCchhHHHHHHhccCCCChHHHHHHHHHHHHHHhccCChh
Q 019215 62 QQRRHLERLHSKGVLWKHPED-QSRSIVFKLSHGGEVSADGNCLFTASQKAMTARDVDARELRRRTVRRFLEDLGSVGEG 140 (344)
Q Consensus 62 qqr~~L~rl~~~GV~wk~p~~-~~~~~vf~L~hggeV~~dGnCLFtA~~~am~~~~~~~relR~r~vrrF~~~~~s~~~e 140 (344)
.--+.|.+|+++|..-..++. ..+...++|.-- |.-++.. ++....+.+...++..+++
T Consensus 59 ~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~------G~~~~~~--------------~~~~~~~~~~~~~~~l~~~ 118 (144)
T 1lj9_A 59 TAARAIKRLEEQGFIYRQEDASNKKIKRIYATEK------GKNVYPI--------------IVRENQHSNQVALQGLSEV 118 (144)
T ss_dssp HHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHH------HHHHHHH--------------HHHHHHHHHHHHTTTCCHH
T ss_pred HHHHHHHHHHHCCCEEeecCCCCCceeeeEEChh------HHHHHHH--------------HHHHHHHHHHHHHhcCCHH
Confidence 345789999999988776542 335666665432 2222222 2222222333445566777
Q ss_pred hHHHHHHHHHhc
Q 019215 141 QREMINDAIRHM 152 (344)
Q Consensus 141 e~e~Id~aIrhl 152 (344)
|++.+.+.++.+
T Consensus 119 e~~~l~~~l~~l 130 (144)
T 1lj9_A 119 EISQLADYLVRM 130 (144)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777666554
No 60
>2xsa_A Ogoga, hyaluronoglucosaminidase; O-GLCNACYLATION, O-GLCNACASE, glycosyl hydrolase, hydrolase; 2.00A {Oceanicola granulosus} PDB: 2xsb_A*
Probab=23.66 E-value=23 Score=35.06 Aligned_cols=55 Identities=13% Similarity=0.169 Sum_probs=42.2
Q ss_pred ChhhHHHHHHHHHhccccCCCCcceeeEEEEEEeeeeccchhhhHHHHHHHHHhhh
Q 019215 138 GEGQREMINDAIRHMYSPDLKNGWGIHVVQEVKLLAKKEDRVGLDSAIDELVQLGM 193 (344)
Q Consensus 138 ~~ee~e~Id~aIrhlY~PdLk~GWGVhvVQevKlLA~k~dr~~Ldaai~Elv~~Gm 193 (344)
..+|.+.|.+-|+--=.=.+..+|+||+-+.+.+ ...+|...|.++++.|.++|.
T Consensus 53 p~eel~~l~eLv~~a~~~~V~Fv~aisPG~di~~-s~~~d~~~L~~K~~ql~~lGV 107 (447)
T 2xsa_A 53 DAAGLARLTELRDAAAARGMVFYVSLAPCLDVTY-SDPQDRAALLARVDQLARAGL 107 (447)
T ss_dssp CHHHHHHHHHHHHHHHTTTCEEEEEECCCSSCCT-TCHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEeCCCcccCC-CCHHHHHHHHHHHHHHHHhCC
Confidence 4566666666665555556788999999988764 345789999999999999986
No 61
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=23.28 E-value=88 Score=23.35 Aligned_cols=70 Identities=10% Similarity=0.139 Sum_probs=41.5
Q ss_pred HHHHHHHHhhcCccccCCC-CCCcceEEEeccCcccCCCCCchhHHHHHHhccCCCChHHHHHHHHHHHHHHhccCChhh
Q 019215 63 QRRHLERLHSKGVLWKHPE-DQSRSIVFKLSHGGEVSADGNCLFTASQKAMTARDVDARELRRRTVRRFLEDLGSVGEGQ 141 (344)
Q Consensus 63 qr~~L~rl~~~GV~wk~p~-~~~~~~vf~L~hggeV~~dGnCLFtA~~~am~~~~~~~relR~r~vrrF~~~~~s~~~ee 141 (344)
--+.|.+|+++|..-+.++ ...+.+.++|.--|.- ++. ++.....+.+...+...+++|
T Consensus 62 vs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~------~~~--------------~~~~~~~~~~~~~~~~l~~~e 121 (145)
T 3g3z_A 62 VSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKA------YAA--------------PLTESAQEFSDKVFATFGDKR 121 (145)
T ss_dssp HHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHH------HHH--------------HHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHH------HHH--------------HHHHHHHHHHHHHHHHcCHHH
Confidence 4578999999999887666 3346666766533321 211 222222233333444557888
Q ss_pred HHHHHHHHHhc
Q 019215 142 REMINDAIRHM 152 (344)
Q Consensus 142 ~e~Id~aIrhl 152 (344)
++.+.+.++.+
T Consensus 122 ~~~l~~~l~~l 132 (145)
T 3g3z_A 122 TTRLFADLDAL 132 (145)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88877776655
No 62
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=23.21 E-value=74 Score=24.14 Aligned_cols=71 Identities=14% Similarity=0.252 Sum_probs=34.5
Q ss_pred HHHHHHHHhhcCccccCCC-CCCcceEEEeccCcccCCCCCchhHHHHHHhccCCCChHHHHHHHHHHHHHHhccCChhh
Q 019215 63 QRRHLERLHSKGVLWKHPE-DQSRSIVFKLSHGGEVSADGNCLFTASQKAMTARDVDARELRRRTVRRFLEDLGSVGEGQ 141 (344)
Q Consensus 63 qr~~L~rl~~~GV~wk~p~-~~~~~~vf~L~hggeV~~dGnCLFtA~~~am~~~~~~~relR~r~vrrF~~~~~s~~~ee 141 (344)
-.+.|++|+++|..-+.++ ...+...++|. +.|.-++ .+++......+.+.+...+++|
T Consensus 80 vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT------~~G~~~~--------------~~~~~~~~~~~~~~~~~l~~~e 139 (162)
T 2fa5_A 80 VSRAVARLLERGFIRRETHGDDRRRSMLALS------PAGRQVY--------------ETVAPLVNEMEQRLMSVFSAEE 139 (162)
T ss_dssp HHHHHHHHHHTTSEEC---------CCCEEC------HHHHHHH--------------HHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHCCCEeeecCCCCCCeeEEEEC------HHHHHHH--------------HHHHHHHHHHHHHHHhcCCHHH
Confidence 3456778888887665543 12233333332 1121111 1223333333344556778888
Q ss_pred HHHHHHHHHhcc
Q 019215 142 REMINDAIRHMY 153 (344)
Q Consensus 142 ~e~Id~aIrhlY 153 (344)
++.+.+.++.+.
T Consensus 140 ~~~l~~~l~~l~ 151 (162)
T 2fa5_A 140 QQTLERLIDRLA 151 (162)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888887777653
No 63
>3hk4_A MLR7391 protein; NTF2-like protein, structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, lyase; HET: MSE; 1.96A {Mesorhizobium loti}
Probab=22.88 E-value=37 Score=26.98 Aligned_cols=28 Identities=18% Similarity=0.163 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHhccccCC
Q 019215 124 RRTVRRFLEDLGSVGEGQREMINDAIRHMYSPDL 157 (344)
Q Consensus 124 ~r~vrrF~~~~~s~~~ee~e~Id~aIrhlY~PdL 157 (344)
+.+++||.+-.+ +..+.+++..+|+||.
T Consensus 23 kevv~r~~e~~~------~gd~~~~l~~lya~D~ 50 (136)
T 3hk4_A 23 AEIAKDFTELLK------QGDNAGAAEKYNADDI 50 (136)
T ss_dssp HHHHHHHHHHHH------TTCHHHHHHHHEEEEE
T ss_pred HHHHHHHHHHHH------cCCcHHHHHHHCCCCE
Confidence 457888888776 3445668899999995
No 64
>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} SCOP: d.104.1.3 PDB: 2art_A* 2aru_A* 2c7i_A 2ars_A* 3r07_A
Probab=22.64 E-value=77 Score=27.60 Aligned_cols=38 Identities=26% Similarity=0.472 Sum_probs=30.9
Q ss_pred CCChHHHHHHHHHHHHHHhc------cCChhhHHHHHHHHHhcc
Q 019215 116 DVDARELRRRTVRRFLEDLG------SVGEGQREMINDAIRHMY 153 (344)
Q Consensus 116 ~~~~relR~r~vrrF~~~~~------s~~~ee~e~Id~aIrhlY 153 (344)
+++..+++.+.++.|.+.|+ .++++|.+.|++..+.-|
T Consensus 204 ~~~~~~v~~~l~~~~~~~~~~~~~~~~lt~~e~~~~~~l~~~ky 247 (262)
T 2c8m_A 204 DVSIDEVRNALIRGFSETLHIDFREDTITEKEESLARELFDKKY 247 (262)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCEEEECCCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHhCCCceecCCCHHHHHHHHHHHHhhc
Confidence 57888999999999999885 467888888888777555
No 65
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=22.50 E-value=60 Score=23.62 Aligned_cols=28 Identities=18% Similarity=0.291 Sum_probs=22.2
Q ss_pred cchhhhHHHHHHHHHhhhhhhHHHHHHh
Q 019215 176 EDRVGLDSAIDELVQLGMQREMAAESIY 203 (344)
Q Consensus 176 ~dr~~Ldaai~Elv~~Gmqre~AAEsIY 203 (344)
......+.++.-|+.+||++.+|...|=
T Consensus 12 ~~~~~~~ea~~AL~aLGY~~~ea~kav~ 39 (62)
T 1ixs_A 12 VESEAAEEAVMALAALGFKEAQARAVVL 39 (62)
T ss_dssp -CCHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3345667899999999999999887763
No 66
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=22.39 E-value=83 Score=23.25 Aligned_cols=82 Identities=10% Similarity=0.153 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhhcCccccCCCCCCcceEEEeccCcccCCCCCchhHHHHHHhccCCCChHHHHHHHHHHHHHHhccCChh
Q 019215 61 EQQRRHLERLHSKGVLWKHPEDQSRSIVFKLSHGGEVSADGNCLFTASQKAMTARDVDARELRRRTVRRFLEDLGSVGEG 140 (344)
Q Consensus 61 ~qqr~~L~rl~~~GV~wk~p~~~~~~~vf~L~hggeV~~dGnCLFtA~~~am~~~~~~~relR~r~vrrF~~~~~s~~~e 140 (344)
..-.+.|.||+++|..-..++ .+..+|.+. ...|..+...++..+.. -.+ ......+..|++. ..++++
T Consensus 43 ~Tvt~~l~rLe~kGlv~R~~~--~r~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~-~~ls~e 111 (126)
T 1sd4_A 43 KTIRTLITRLYKKEIIKRYKS--ENIYFYSSN-----IKEDDIKMKTAKTFLNK-LYG--GDMKSLVLNFAKN-EELNNK 111 (126)
T ss_dssp HHHHHHHHHHHHTTSEEEEEE--TTEEEEEEC-----SCHHHHHHHHHHHHHHH-HHT--TCHHHHHHHHHHT-TCSCHH
T ss_pred hhHHHHHHHHHHCCceEEEeC--CCeEEEEEe-----cCHHHHHHHHHHHHHHH-HHC--CCHHHHHHHHHhc-CCCCHH
Confidence 445788999999999877664 244455431 12222222223332211 000 0012334444432 568999
Q ss_pred hHHHHHHHHHhcc
Q 019215 141 QREMINDAIRHMY 153 (344)
Q Consensus 141 e~e~Id~aIrhlY 153 (344)
|++.+.+.++.+.
T Consensus 112 e~~~l~~~L~~~~ 124 (126)
T 1sd4_A 112 EIEELRDILNDIS 124 (126)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhh
Confidence 9999999888764
No 67
>2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold, structural genomics, joint cente structural genomics, JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2
Probab=22.06 E-value=67 Score=25.39 Aligned_cols=28 Identities=18% Similarity=0.433 Sum_probs=23.5
Q ss_pred CCCCEEEEeecccccCCCCCCccccccc
Q 019215 303 CEPPIFLFMKGTGWCGAGADHYEPLIAN 330 (344)
Q Consensus 303 ~~~P~FLfMkgTgWcgaGaDHYEPlia~ 330 (344)
...|..+|+-|.||.+.....|.+++..
T Consensus 61 ~~~p~vv~~HGgg~~~~~~~~~~~~~~~ 88 (262)
T 2pbl_A 61 TPVGLFVFVHGGYWMAFDKSSWSHLAVG 88 (262)
T ss_dssp SCSEEEEEECCSTTTSCCGGGCGGGGHH
T ss_pred CCCCEEEEEcCcccccCChHHHHHHHHH
Confidence 4578999999999998888899887653
No 68
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=22.01 E-value=91 Score=24.11 Aligned_cols=72 Identities=15% Similarity=0.295 Sum_probs=40.5
Q ss_pred HHHHHHHHhhcCccccCCCC-CCcceEEEeccCcccCCCCCchhHHHHHHhccCCCChHHHHHHHHHHHHHHhccCChhh
Q 019215 63 QRRHLERLHSKGVLWKHPED-QSRSIVFKLSHGGEVSADGNCLFTASQKAMTARDVDARELRRRTVRRFLEDLGSVGEGQ 141 (344)
Q Consensus 63 qr~~L~rl~~~GV~wk~p~~-~~~~~vf~L~hggeV~~dGnCLFtA~~~am~~~~~~~relR~r~vrrF~~~~~s~~~ee 141 (344)
--+.|.+|+++|..-+.++. ..+.+.+.|.= .|. +++ .+++......+...+..++++|
T Consensus 79 vs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~------~G~-------~~~-------~~~~~~~~~~~~~~~~~l~~~e 138 (168)
T 3u2r_A 79 ITRLIDRLDDRGLVLRTRKPENRRVVEVALTD------AGL-------KLL-------KDLEEPVRQCHERQLGHLAADE 138 (168)
T ss_dssp HHHHHHHHHHTTSEEEEEETTEEEEEEEEECH------HHH-------HHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEeecCCCCCCCeeEeEECH------HHH-------HHH-------HHHHHHHHHHHHHHHhcCCHHH
Confidence 35688999999988776552 23555555542 221 111 1222222233333444567899
Q ss_pred HHHHHHHHHhccc
Q 019215 142 REMINDAIRHMYS 154 (344)
Q Consensus 142 ~e~Id~aIrhlY~ 154 (344)
++.+.+.++.+..
T Consensus 139 ~~~l~~~L~~l~~ 151 (168)
T 3u2r_A 139 LHELIRLMELART 151 (168)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHH
Confidence 9999888887753
No 69
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=22.00 E-value=2.3e+02 Score=20.60 Aligned_cols=72 Identities=18% Similarity=0.341 Sum_probs=42.2
Q ss_pred HHHHHHHHhhcCccccCCC-CCCcceEEEeccCcccCCCCCchhHHHHHHhccCCCChHHHHHHHHHHHHHHhccCChhh
Q 019215 63 QRRHLERLHSKGVLWKHPE-DQSRSIVFKLSHGGEVSADGNCLFTASQKAMTARDVDARELRRRTVRRFLEDLGSVGEGQ 141 (344)
Q Consensus 63 qr~~L~rl~~~GV~wk~p~-~~~~~~vf~L~hggeV~~dGnCLFtA~~~am~~~~~~~relR~r~vrrF~~~~~s~~~ee 141 (344)
--+.|.+|+++|..-+.++ .+.+...+.|.--|. =++..+... +++.... ..+...+++|
T Consensus 65 vs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~------~~~~~~~~~----------~~~~~~~---~~~~~l~~~e 125 (138)
T 1jgs_A 65 LTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGA------AICEQCHQL----------VGQDLHQ---ELTKNLTADE 125 (138)
T ss_dssp HHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHH------HHHHHHHHH----------HHHHHHH---HHHTTTTTTC
T ss_pred HHHHHHHHHHCCCEEecCCcccCceeEeEEChhHH------HHHHHHHHH----------HHHHHHH---HHHhcCCHHH
Confidence 3568999999998766544 334666666653332 111111111 1112223 3356678999
Q ss_pred HHHHHHHHHhcc
Q 019215 142 REMINDAIRHMY 153 (344)
Q Consensus 142 ~e~Id~aIrhlY 153 (344)
++.+.+.++.++
T Consensus 126 ~~~l~~~l~~l~ 137 (138)
T 1jgs_A 126 VATLEYLLKKVL 137 (138)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHhh
Confidence 999999998875
No 70
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=21.67 E-value=50 Score=25.13 Aligned_cols=27 Identities=19% Similarity=0.342 Sum_probs=21.7
Q ss_pred chhhhHHHHHHHHHhhhhhhHHHHHHh
Q 019215 177 DRVGLDSAIDELVQLGMQREMAAESIY 203 (344)
Q Consensus 177 dr~~Ldaai~Elv~~Gmqre~AAEsIY 203 (344)
+-...+.+|+.|++.|++|+.|...+-
T Consensus 25 ~~~~~ee~I~~L~eMGF~r~~a~~AL~ 51 (73)
T 1vg5_A 25 RVAASEEQIQKLVAMGFDRTQVEVALA 51 (73)
T ss_dssp CSCCCHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCcccHHHHHHHHHcCCCHHHHHHHHH
Confidence 344568899999999999998877654
No 71
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=21.29 E-value=75 Score=27.30 Aligned_cols=34 Identities=29% Similarity=0.361 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHhc-cc-cCC
Q 019215 124 RRTVRRFLEDLGSVGEGQREMINDAIRHM-YS-PDL 157 (344)
Q Consensus 124 ~r~vrrF~~~~~s~~~ee~e~Id~aIrhl-Y~-PdL 157 (344)
.-||.|-+..-..++++-|++|.++++.| |. |..
T Consensus 23 ~~TVSrvLn~~~~Vs~~tr~rV~~~a~~lgY~~pn~ 58 (366)
T 3h5t_A 23 RTTVSNAYNRPEQLSAELRQRILDTAEDMGYLGPDP 58 (366)
T ss_dssp HHHHHHHHHCGGGSCHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCCCCCH
Confidence 35899999999999999999999999987 76 763
No 72
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.16 E-value=68 Score=22.99 Aligned_cols=25 Identities=16% Similarity=0.433 Sum_probs=20.8
Q ss_pred hHHHHHHHHHhhhhhhHHHHHHhhh
Q 019215 181 LDSAIDELVQLGMQREMAAESIYKE 205 (344)
Q Consensus 181 Ldaai~Elv~~Gmqre~AAEsIYkE 205 (344)
-+.+|+.|++.|++|+.|...+..-
T Consensus 9 ~~~~v~~L~~MGF~~~~a~~AL~~t 33 (63)
T 2dak_A 9 PEDCVTTIVSMGFSRDQALKALRAT 33 (63)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHT
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 3568999999999999988887764
No 73
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=21.08 E-value=20 Score=30.44 Aligned_cols=35 Identities=29% Similarity=0.449 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHHHHHhc-cccCC
Q 019215 123 RRRTVRRFLEDLGSVGEGQREMINDAIRHM-YSPDL 157 (344)
Q Consensus 123 R~r~vrrF~~~~~s~~~ee~e~Id~aIrhl-Y~PdL 157 (344)
=+-||.|-+..-..++++-|++|.++++.| |.|..
T Consensus 18 S~~TVSrvln~~~~vs~~tr~rV~~~a~~lgY~pn~ 53 (332)
T 2o20_A 18 SMATVSRVVNGNANVKEKTRQKVLEAIAELDYRPNA 53 (332)
T ss_dssp ------------------------------------
T ss_pred CHHHHHHHHcCCCCCCHHHHHHHHHHHHHHCCCcCH
Confidence 356899999988889999999999999877 88874
No 74
>2a3q_A Hypothetical protein; MM.29898, BC004623, 2410015N17RIK, structural genomics, PROT structure initiative, PSI; 2.32A {Mus musculus} SCOP: a.204.1.2 PDB: 2q4p_A
Probab=20.90 E-value=60 Score=27.61 Aligned_cols=37 Identities=11% Similarity=-0.032 Sum_probs=33.2
Q ss_pred CCCCchhHHHHHHhccCCCChHHHHHHHHHHHHHHhcc
Q 019215 99 ADGNCLFTASQKAMTARDVDARELRRRTVRRFLEDLGS 136 (344)
Q Consensus 99 ~dGnCLFtA~~~am~~~~~~~relR~r~vrrF~~~~~s 136 (344)
.-|+|||.-+..|-.+ .+|+.+.=++..+.|...|..
T Consensus 95 ELGDVL~~lv~LA~~l-gIDleeAl~~k~~K~~~Ryp~ 131 (170)
T 2a3q_A 95 ELSDVLIYLVALAARC-HVDLPQAVISKMDTNRQRYPV 131 (170)
T ss_dssp HHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHhccc
Confidence 3599999999988888 999999999999999999964
No 75
>3h4o_A Nitroreductase family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN; 1.50A {Clostridium difficile 630} PDB: 3koq_A*
Probab=20.87 E-value=9.4 Score=31.59 Aligned_cols=41 Identities=24% Similarity=0.339 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHHHHHhccccCCCC--cceeeEEE
Q 019215 123 RRRTVRRFLEDLGSVGEGQREMINDAIRHMYSPDLKN--GWGIHVVQ 167 (344)
Q Consensus 123 R~r~vrrF~~~~~s~~~ee~e~Id~aIrhlY~PdLk~--GWGVhvVQ 167 (344)
+||++|+|.+ ..++.++.+.|-++.+ ++|+-.| .|.+.||+
T Consensus 28 ~RrSvR~f~~--~~v~~e~l~~il~aa~--~APS~~n~Qpw~f~vv~ 70 (191)
T 3h4o_A 28 KRYSCRNYQD--RKVEKEKLEKVLDVAR--IAPTGGNRQPQRLIVIQ 70 (191)
T ss_dssp HCCBCCCBCS--CCCCHHHHHHHHHHHH--HSCCGGGCCCEEEEEEC
T ss_pred hCccccccCC--CCCCHHHHHHHHHHHH--hCcCcCCCcCeEEEEEe
Confidence 5778899864 6788888888888876 5898766 57777775
No 76
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=20.87 E-value=2.8e+02 Score=21.03 Aligned_cols=71 Identities=18% Similarity=0.303 Sum_probs=42.1
Q ss_pred HHHHHHHHhhcCccccCCC-CCCcceEEEeccCcccCCCCCchhHHHHHHhccCCCChHHHHHHHHHHHHHHhccCChhh
Q 019215 63 QRRHLERLHSKGVLWKHPE-DQSRSIVFKLSHGGEVSADGNCLFTASQKAMTARDVDARELRRRTVRRFLEDLGSVGEGQ 141 (344)
Q Consensus 63 qr~~L~rl~~~GV~wk~p~-~~~~~~vf~L~hggeV~~dGnCLFtA~~~am~~~~~~~relR~r~vrrF~~~~~s~~~ee 141 (344)
--+.|.+|+++|..-+.++ ...+.+.+.|.=-| .=++ .+++...-+.+.+.++.++++|
T Consensus 81 vs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G------~~~~--------------~~~~~~~~~~~~~~~~~l~~~e 140 (159)
T 3s2w_A 81 TARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKG------KKLE--------------PDMKKIASEWGEILFSSFDDRQ 140 (159)
T ss_dssp HHHHHHHHHHTTSEEEEECC---CCEEEEECHHH------HHHH--------------HHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHH------HHHH--------------HHHHHHHHHHHHHHHHcCCHHH
Confidence 3578899999998876655 23356666554222 1111 2333334444455567788999
Q ss_pred HHHHHHHHHhcc
Q 019215 142 REMINDAIRHMY 153 (344)
Q Consensus 142 ~e~Id~aIrhlY 153 (344)
++.+.+.++.+.
T Consensus 141 ~~~l~~~l~~l~ 152 (159)
T 3s2w_A 141 RREITNSLEIMF 152 (159)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888877776553
No 77
>3e39_A Putative nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN PGE; 1.70A {Desulfovibrio desulfuricans subsp}
Probab=20.66 E-value=13 Score=29.86 Aligned_cols=41 Identities=24% Similarity=0.421 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHHHHHhccccCCCC--cceeeEEE
Q 019215 123 RRRTVRRFLEDLGSVGEGQREMINDAIRHMYSPDLKN--GWGIHVVQ 167 (344)
Q Consensus 123 R~r~vrrF~~~~~s~~~ee~e~Id~aIrhlY~PdLk~--GWGVhvVQ 167 (344)
.||++|+|.+ ..++.++.+.|-++.+ ++|+-.| .|-+.+|+
T Consensus 14 ~RrSvR~f~~--~~v~~e~l~~il~aa~--~aPs~~n~qp~~~~vv~ 56 (178)
T 3e39_A 14 QRRSIRRYTD--EAVSDEAVRLILEAGI--WAPSGLNNQPCRFLVIR 56 (178)
T ss_dssp HCCBCCCBCS--CCCCHHHHHHHHHHHH--TSCCGGGCCCEEEEEEE
T ss_pred hCcchhcCCC--CCCCHHHHHHHHHHHH--hCCCCCCCCCeEEEEEE
Confidence 4678888874 5778888888888775 6898765 57777765
No 78
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=20.55 E-value=2e+02 Score=21.06 Aligned_cols=71 Identities=15% Similarity=0.244 Sum_probs=41.9
Q ss_pred HHHHHHHHHhhcCccccCCC-CCCcceEEEeccCcccCCCCCchhHHHHHHhccCCCChHHHHHHHHHHHHHHhccCChh
Q 019215 62 QQRRHLERLHSKGVLWKHPE-DQSRSIVFKLSHGGEVSADGNCLFTASQKAMTARDVDARELRRRTVRRFLEDLGSVGEG 140 (344)
Q Consensus 62 qqr~~L~rl~~~GV~wk~p~-~~~~~~vf~L~hggeV~~dGnCLFtA~~~am~~~~~~~relR~r~vrrF~~~~~s~~~e 140 (344)
.-.+.|.+|+++|..=+.++ .+.+...++|.--| .=++. .++......+.+.++..+++
T Consensus 66 tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G------~~~~~--------------~~~~~~~~~~~~~~~~l~~~ 125 (146)
T 2gxg_A 66 AITASVDKLEEMGLVVRVRDREDRRKILIEITEKG------LETFN--------------KGIEIYKKLANEVTGDLSED 125 (146)
T ss_dssp HHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHH------HHHHH--------------HHHHHHHHHHHHHTTTSCHH
T ss_pred hHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHH------HHHHH--------------HHHHHHHHHHHHHHhcCCHH
Confidence 44678999999998876554 23355566554322 11111 22333333444456677888
Q ss_pred hHHHHHHHHHhc
Q 019215 141 QREMINDAIRHM 152 (344)
Q Consensus 141 e~e~Id~aIrhl 152 (344)
|++.+.+.++.+
T Consensus 126 e~~~l~~~l~~~ 137 (146)
T 2gxg_A 126 EVILVLDKISKI 137 (146)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888887777655
No 79
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=20.52 E-value=97 Score=23.37 Aligned_cols=71 Identities=15% Similarity=0.355 Sum_probs=37.0
Q ss_pred HHHHHHHHhhcCccccCCC-CCCcceEEEeccCcccCCCCCchhHHHHHHhccCCCChHHHHHHHHHHHHHHhccCChhh
Q 019215 63 QRRHLERLHSKGVLWKHPE-DQSRSIVFKLSHGGEVSADGNCLFTASQKAMTARDVDARELRRRTVRRFLEDLGSVGEGQ 141 (344)
Q Consensus 63 qr~~L~rl~~~GV~wk~p~-~~~~~~vf~L~hggeV~~dGnCLFtA~~~am~~~~~~~relR~r~vrrF~~~~~s~~~ee 141 (344)
--+.|.+|+++|..-+.++ ...+.+.+.|.--| .-++... .+.......++ ++..+++|
T Consensus 74 vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G------~~~~~~~-----------~~~~~~~~~~~---~~~l~~~e 133 (155)
T 3cdh_A 74 MTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDG------RALAESL-----------VASARAHETRL---LSALADTD 133 (155)
T ss_dssp HHHHHHHHHHTTSEEECC------CCCEEECHHH------HHHHHHH-----------HHHHHHHHHHH---HHHTTTSG
T ss_pred HHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHH------HHHHHHH-----------HHHHHHHHHHH---HhcCCHHH
Confidence 4578899999998876654 22344455544322 1111111 12222333333 44567888
Q ss_pred HHHHHHHHHhcc
Q 019215 142 REMINDAIRHMY 153 (344)
Q Consensus 142 ~e~Id~aIrhlY 153 (344)
++.+.+.++.+.
T Consensus 134 ~~~l~~~l~~l~ 145 (155)
T 3cdh_A 134 AARIKGVLRTLL 145 (155)
T ss_dssp GGGHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 887777766554
No 80
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=20.29 E-value=2.5e+02 Score=20.33 Aligned_cols=72 Identities=15% Similarity=0.251 Sum_probs=41.9
Q ss_pred HHHHHHHHHhhcCccccCCCC-CCcceEEEeccCcccCCCCCchhHHHHHHhccCCCChHHHHHHHHHHHHHHhccCChh
Q 019215 62 QQRRHLERLHSKGVLWKHPED-QSRSIVFKLSHGGEVSADGNCLFTASQKAMTARDVDARELRRRTVRRFLEDLGSVGEG 140 (344)
Q Consensus 62 qqr~~L~rl~~~GV~wk~p~~-~~~~~vf~L~hggeV~~dGnCLFtA~~~am~~~~~~~relR~r~vrrF~~~~~s~~~e 140 (344)
.-.+.|++|+++|..-+.++. ..+...+.|.- .|.-++. +++......+...+...+++
T Consensus 59 tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~------~G~~~~~--------------~~~~~~~~~~~~~~~~l~~~ 118 (138)
T 3bpv_A 59 TIARTLRRLEESGFIEREQDPENRRRYILEVTR------RGEEIIP--------------LILKVEERWEDLLFRDFTED 118 (138)
T ss_dssp HHHHHHHHHHHTTSEEEEEETTEEEEEEEEECH------HHHHTHH--------------HHHHHHHHHHHHHTTTSCHH
T ss_pred HHHHHHHHHHHCCCEEeecCCCCceeEEeeECH------hHHHHHH--------------HHHHHHHHHHHHHHhcCCHH
Confidence 345789999999988775542 22444555442 2222221 22222233344456677889
Q ss_pred hHHHHHHHHHhcc
Q 019215 141 QREMINDAIRHMY 153 (344)
Q Consensus 141 e~e~Id~aIrhlY 153 (344)
|++.+.+.++.+.
T Consensus 119 e~~~l~~~l~~~~ 131 (138)
T 3bpv_A 119 ERKLFRKMCRRLA 131 (138)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9888888777653
Done!