BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019217
         (344 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3C2R|A Chain A, Crystal Structure Of The Quinolinate Phosphoribosyl
           Transferase (Bna6) From Sachharomyces Cerevisiae
           Complexed With The Inhibitor Phthalate
 pdb|3C2R|B Chain B, Crystal Structure Of The Quinolinate Phosphoribosyl
           Transferase (Bna6) From Sachharomyces Cerevisiae
           Complexed With The Inhibitor Phthalate
          Length = 295

 Score = 30.4 bits (67), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 177 DKATKAATGGSDVMFRELRKPRGDPEVLAAQSKEQYFKSKLQFLTLGIGGVGL 229
           D+AT+A   G+DV+   L   +GD   + AQS +  +  K  FL    GG+ L
Sbjct: 211 DEATEAIEAGADVIM--LDNFKGDGLKMCAQSLKNKWNGKKHFLLECSGGLNL 261


>pdb|3C2E|A Chain A, Crystal Structure At 1.9a Of The Apo Quinolinate
           Phosphoribosyl Transferase (Bna6) From Saccharomyces
           Cerevisiae
 pdb|3C2O|A Chain A, Crystal Structure Of The Quinolinate Phosphoribosyl
           Transferase (Bna6) From Sachharomyces Cerevisiae
           Complexed With Quinolinate
 pdb|3C2F|A Chain A, Crystal Structure Of The Quinolinate Phosphoribosyl
           Transferase (Bna6) From Saccharomyces Cerevisiae
           Complexed With Prpp
 pdb|3C2V|A Chain A, Crystal Structure Of The Quinolinate Phosphoribosyl
           Transferase (Bna6) From Saccharomyces Cerevisiae
           Complexed With Prpp And The Inhibitor Phthalate
          Length = 294

 Score = 30.4 bits (67), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 177 DKATKAATGGSDVMFRELRKPRGDPEVLAAQSKEQYFKSKLQFLTLGIGGVGL 229
           D+AT+A   G+DV+   L   +GD   + AQS +  +  K  FL    GG+ L
Sbjct: 210 DEATEAIEAGADVIM--LDNFKGDGLKMCAQSLKNKWNGKKHFLLECSGGLNL 260


>pdb|2C2J|A Chain A, Crystal Structure Of The Dps92 From Deinococcus
           Radiodurans
 pdb|2C6R|A Chain A, Fe-Soaked Crystal Structure Of The Dps92 From Deinococcus
           Radiodurans
          Length = 211

 Score = 28.1 bits (61), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 314 LVGFFTYKIATFFQAVEEAVSIVEKKDP 341
           ++ FFTY+  T  Q + + V  VEK DP
Sbjct: 136 VIQFFTYQYETVGQRIHQRVGDVEKVDP 163


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.134    0.390 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,921,040
Number of Sequences: 62578
Number of extensions: 346397
Number of successful extensions: 684
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 679
Number of HSP's gapped (non-prelim): 8
length of query: 344
length of database: 14,973,337
effective HSP length: 100
effective length of query: 244
effective length of database: 8,715,537
effective search space: 2126591028
effective search space used: 2126591028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)