BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019217
         (344 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P08443|ATPZ_SYNP6 ATP synthase protein I OS=Synechococcus sp. (strain ATCC 27144 /
           PCC 6301 / SAUG 1402/1) GN=atpI PE=3 SV=1
          Length = 118

 Score = 55.8 bits (133), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 15/103 (14%)

Query: 231 SAYISYSPEIAASFAAGLLGSLVYIRMLGSTVDSMAAGAKGLMKGAVGQPRLLVPVVLVM 290
           + + +YS   AAS+  G +G L+Y+RMLG  V+ +     G  +   G+ RL + VVL++
Sbjct: 25  AVWWAYSLNTAASYLLGAMGGLLYLRMLGKAVERI-----GERRRQFGKSRLALFVVLIV 79

Query: 291 IYNRWNEITVPEYGFLHLELIPMLVGFFTYKIATFFQAVEEAV 333
           +  RW           +LEL+P+ +GF TYK A  +  +   +
Sbjct: 80  LAARWQ----------YLELMPVFLGFLTYKAALIWYTLRAVI 112


>sp|Q05376|ATPZ_SYNP1 ATP synthase protein I OS=Synechococcus sp. (strain PCC 6716)
           GN=atpI PE=3 SV=2
          Length = 115

 Score = 49.7 bits (117), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 20/119 (16%)

Query: 207 QSKEQYFKSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYIRMLGSTVDSMA 266
           Q   + F + L  + +  G V     ++ Y    A ++  G   SL+Y+R+L   V+ + 
Sbjct: 6   QLCRELFTTSLVLMAIAFGTV-----WVIYDLNTALNYLLGASASLIYLRLLARNVERLG 60

Query: 267 AGAKGLMKGAVGQPRLLVPVVLVMIYNRWNEITVPEYGFLHLELIPMLVGFFTYKIATF 325
              K L     G+ +LLV V ++++  RW+E          L +IP+ +GF TYK A  
Sbjct: 61  HDQKKL-----GKTQLLVVVAVIILAARWHE----------LHIIPVFLGFLTYKAAIL 104


>sp|P12403|ATPZ_NOSS1 ATP synthase protein I OS=Nostoc sp. (strain PCC 7120 / UTEX 2576)
           GN=atpI PE=3 SV=2
          Length = 122

 Score = 49.7 bits (117), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 15/117 (12%)

Query: 216 KLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYIRMLGSTVDSMAAGAKGLMKG 275
           +L  +TL + GV  +S +I YS  IA ++  G    +VY+RML   V+ +     G  K 
Sbjct: 10  ELVLITLVLTGVVFISVWIFYSLNIALNYLLGACTGVVYLRMLAKDVERL-----GREKQ 64

Query: 276 AVGQPRLLVPVVLVMIYNRWNEITVPEYGFLHLELIPMLVGFFTYKIATFFQAVEEA 332
           ++ + RL + + L+++ +RWN+          L+++P+ +GF TYK       V  A
Sbjct: 65  SLSKTRLALLMALILLASRWNQ----------LQIMPIFLGFLTYKATLIIYVVRVA 111


>sp|P27196|ATPZ_SYNY3 ATP synthase protein I OS=Synechocystis sp. (strain PCC 6803 /
           Kazusa) GN=atpI PE=3 SV=1
          Length = 117

 Score = 37.4 bits (85), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 15/99 (15%)

Query: 236 YSPEIAASFAAGLLGSLVYIRMLGSTVDSMAAGAKGLMKGAVGQPRLLVPVVLVMIYNRW 295
           YS  IA ++  G L  LVY+++L   V+ + A       G  G   L V V L++I  + 
Sbjct: 30  YSLNIALNYLLGALVGLVYLKLLAKDVERIGA-----QSGRAGVKGLAVFVGLIIIATQR 84

Query: 296 NEITVPEYGFLHLELIPMLVGFFTYKIATFFQAVEEAVS 334
                      +LE++P+ +GF TYK A  F  ++   +
Sbjct: 85  E----------NLEVLPIFLGFLTYKAAIIFYMLQSVFT 113


>sp|Q10341|CYS2_SCHPO Probable serine-O-acetyltransferase cys2 OS=Schizosaccharomyces
           pombe (strain 972 / ATCC 24843) GN=cys2 PE=1 SV=1
          Length = 504

 Score = 33.1 bits (74), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 11/103 (10%)

Query: 37  LPKKKSMKWSTGVAPGEYGGPPTTTKLRKFWGGEKEDPLTSDEFIWNNDFMPRMKRLIED 96
           +P    MK +  VA   Y   P   +  + +G  + DP  S  F    DF      LIE 
Sbjct: 280 VPPHTGMKLAREVATISYRSGP---EWEQRFGNRRADPSVSPAFC--PDF------LIET 328

Query: 97  TDESSAEKFPVQEEPSGFLSLNRVMSLDSLEVDLSKELTADSK 139
             + + EKF +Q +P+  L +++ M +  +     + L+ + K
Sbjct: 329 YLDHAGEKFCLQYDPNSLLYISKAMDMHDMSASHQRSLSENRK 371


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.131    0.377 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128,200,262
Number of Sequences: 539616
Number of extensions: 5618982
Number of successful extensions: 12733
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 12666
Number of HSP's gapped (non-prelim): 86
length of query: 344
length of database: 191,569,459
effective HSP length: 118
effective length of query: 226
effective length of database: 127,894,771
effective search space: 28904218246
effective search space used: 28904218246
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)