Query 019217
Match_columns 344
No_of_seqs 106 out of 116
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 07:40:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019217.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019217hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03899 ATP_synt_I: ATP synth 98.2 5.4E-06 1.2E-10 65.2 7.5 94 216-318 1-100 (100)
2 PF12966 AtpR: N-ATPase, AtpR 94.4 0.11 2.4E-06 42.3 5.9 78 239-327 2-81 (85)
3 PRK05760 F0F1 ATP synthase sub 92.6 1.7 3.8E-05 37.5 10.4 104 216-333 9-118 (124)
4 PRK06099 F0F1 ATP synthase sub 89.4 1 2.2E-05 39.4 6.1 87 233-333 30-120 (126)
5 PRK08049 F0F1 ATP synthase sub 82.1 28 0.00061 30.5 11.2 84 232-332 28-120 (124)
6 COG3312 AtpI F0F1-type ATP syn 77.4 23 0.00051 31.6 9.2 38 214-252 12-49 (128)
7 PF03030 H_PPase: Inorganic H+ 57.0 29 0.00064 38.2 6.8 54 207-260 34-94 (682)
8 PRK00733 hppA membrane-bound p 56.8 40 0.00087 37.2 7.7 54 207-260 20-79 (666)
9 PLN00097 photosystem I light h 56.0 6.1 0.00013 38.3 1.4 22 34-55 45-66 (244)
10 PF14362 DUF4407: Domain of un 54.9 49 0.0011 31.7 7.3 88 207-295 10-100 (301)
11 PF04246 RseC_MucC: Positive r 53.7 35 0.00076 29.1 5.5 29 236-264 95-123 (135)
12 PRK10862 SoxR reducing system 53.5 41 0.00089 30.0 6.1 29 236-264 102-130 (154)
13 PF04418 DUF543: Domain of unk 52.3 43 0.00093 27.1 5.5 43 213-255 26-68 (75)
14 COG0109 CyoE Polyprenyltransfe 51.8 1.3E+02 0.0029 30.2 9.9 104 207-319 16-131 (304)
15 COG3808 OVP1 Inorganic pyropho 49.9 45 0.00098 36.4 6.7 46 207-252 46-91 (703)
16 COG4965 TadB Flp pilus assembl 48.8 59 0.0013 32.7 7.0 42 215-256 82-123 (309)
17 PRK08378 hypothetical protein; 48.5 59 0.0013 27.5 5.9 46 215-260 26-76 (93)
18 PF11712 Vma12: Endoplasmic re 47.0 1.1E+02 0.0023 26.7 7.6 29 237-265 106-138 (142)
19 PF12794 MscS_TM: Mechanosensi 46.6 62 0.0013 32.1 6.8 70 169-245 265-334 (340)
20 TIGR03165 F1F0_chp_2 F1/F0 ATP 46.4 1.7E+02 0.0036 24.3 8.1 68 239-325 2-79 (83)
21 PF06738 DUF1212: Protein of u 45.4 70 0.0015 28.4 6.3 40 219-258 105-146 (193)
22 TIGR01104 V_PPase vacuolar-typ 44.5 80 0.0017 35.1 7.7 51 207-258 44-102 (697)
23 PLN00048 photosystem I light h 43.3 28 0.0006 34.1 3.7 21 35-55 44-64 (262)
24 PRK09917 hypothetical protein; 38.7 2.1E+02 0.0046 25.8 8.3 93 219-323 14-106 (157)
25 PF04148 Erv26: Transmembrane 37.1 1.5E+02 0.0032 28.5 7.3 77 206-295 31-109 (211)
26 COG3086 RseC Positive regulato 36.5 1.2E+02 0.0026 27.9 6.3 51 213-265 75-131 (150)
27 PF10112 Halogen_Hydrol: 5-bro 35.5 1E+02 0.0022 27.9 5.9 34 222-255 15-48 (199)
28 PF12597 DUF3767: Protein of u 33.9 1.3E+02 0.0028 26.1 5.9 46 215-260 41-92 (118)
29 PLN00100 light-harvesting comp 33.5 30 0.00066 33.7 2.3 21 35-55 37-57 (246)
30 PF13244 DUF4040: Domain of un 32.8 1.6E+02 0.0035 23.2 5.8 46 215-260 15-65 (70)
31 PF00584 SecE: SecE/Sec61-gamm 31.7 74 0.0016 23.4 3.6 35 214-248 21-55 (57)
32 PLN02277 H(+) -translocating i 29.5 1.9E+02 0.0041 32.5 7.6 52 207-258 36-107 (730)
33 PRK07597 secE preprotein trans 28.4 87 0.0019 23.8 3.6 34 214-247 29-62 (64)
34 PLN02975 complex I subunit 27.5 84 0.0018 26.8 3.7 42 222-265 35-82 (97)
35 COG4818 Predicted membrane pro 27.0 61 0.0013 28.0 2.7 20 238-257 5-24 (105)
36 TIGR00964 secE_bact preprotein 26.9 97 0.0021 23.0 3.5 35 213-247 19-53 (55)
37 PF14108 DUF4281: Domain of un 24.4 1E+02 0.0022 26.8 3.8 76 239-314 29-115 (129)
38 KOG2890 Predicted membrane pro 23.3 57 0.0012 33.1 2.2 29 235-263 194-222 (326)
39 PF13748 ABC_membrane_3: ABC t 22.8 3.9E+02 0.0084 26.2 7.6 79 187-265 82-165 (237)
40 PF02517 Abi: CAAX protease se 22.4 2.2E+02 0.0047 21.7 4.9 37 220-256 38-74 (91)
41 COG0344 Predicted membrane pro 22.1 93 0.002 29.5 3.2 32 240-271 9-42 (200)
42 PLN00101 Photosystem I light-h 21.7 1.3E+02 0.0029 29.3 4.3 21 35-55 55-75 (250)
43 PLN02720 complex II 21.4 1.7E+02 0.0036 26.6 4.5 48 215-262 66-116 (140)
44 COG0690 SecE Preprotein transl 21.4 1.4E+02 0.0031 23.7 3.7 45 202-246 21-71 (73)
45 COG5415 Predicted integral mem 21.4 1.9E+02 0.004 28.4 5.1 47 209-256 37-87 (251)
46 PF07954 DUF1689: Protein of u 21.0 2.8E+02 0.0061 25.3 6.0 66 193-260 9-89 (152)
47 PF10947 DUF2628: Protein of u 20.3 3.1E+02 0.0068 22.4 5.7 24 237-260 85-108 (108)
48 PF10911 DUF2717: Protein of u 20.1 5E+02 0.011 21.5 6.6 55 197-257 12-66 (77)
No 1
>PF03899 ATP_synt_I: ATP synthase I chain; InterPro: IPR005598 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. The atp operon of most prokaryotes contains the structural genes for the F-ATPase (ATP synthase), which are preceded by an atpI gene that encodes a membrane protein of unknown function. A possible function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex []. A role in magnesium uptake has also been suggested []. More information about this protein can be found at Protein of the Month: ATP synthases [].
Probab=98.21 E-value=5.4e-06 Score=65.22 Aligned_cols=94 Identities=20% Similarity=0.252 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccc----cccC--CCCCCCchHHHHHHH
Q 019217 216 KLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYIRMLGSTVDSMAAGAK----GLMK--GAVGQPRLLVPVVLV 289 (344)
Q Consensus 216 ~Lll~Tl~ig~vg~~~~~l~yS~~~AlSyllGA~gGllYLrLLarsVD~Lg~~~~----g~~k--galgqpRLLVPV~Lv 289 (344)
++...++.+++++.+.++++++.+.++|+++|++.+++...++.+.++++.+... +..+ ....--|+++-++++
T Consensus 1 ri~~~~~~l~~~~~~~~~~~~~~~~~~s~~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~R~~l~~~~~ 80 (100)
T PF03899_consen 1 RIVIIQLILLAVLALVFFLFFGWPVALSFLLGGLISLLNFFLLARRVFRLAGALAMDPGRAVRAMYLGYFIRLALTILLF 80 (100)
T ss_pred ChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHH
Confidence 3567888999999999999999999999999999999999999999966643211 1111 011236788888888
Q ss_pred HHHHHhhccccCCccccchhHHHHHHHHH
Q 019217 290 MIYNRWNEITVPEYGFLHLELIPMLVGFF 318 (344)
Q Consensus 290 v~a~rwn~i~~p~f~~~~LeLlP~llGFL 318 (344)
++..++.. +++.++.++||+
T Consensus 81 ~~~~~~~~---------~~~~~~~~~Gl~ 100 (100)
T PF03899_consen 81 ILAFKFPP---------ELNPIALLIGLL 100 (100)
T ss_pred HHHHHHHc---------ccHHHHHHHHHC
Confidence 88888833 489999999985
No 2
>PF12966 AtpR: N-ATPase, AtpR subunit
Probab=94.44 E-value=0.11 Score=42.30 Aligned_cols=78 Identities=21% Similarity=0.208 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhhccccccccCCCCCC--CchHHHHHHHHHHHHhhccccCCccccchhHHHHHHH
Q 019217 239 EIAASFAAGLLGSLVYIRMLGSTVDSMAAGAKGLMKGAVGQ--PRLLVPVVLVMIYNRWNEITVPEYGFLHLELIPMLVG 316 (344)
Q Consensus 239 ~~AlSyllGA~gGllYLrLLarsVD~Lg~~~~g~~kgalgq--pRLLVPV~Lvv~a~rwn~i~~p~f~~~~LeLlP~llG 316 (344)
+.+..+++|.+.|.+|..-|-.+|.++..+... ..--.++ .|+.+.++...+.++.+. ..++..++|
T Consensus 2 ~~~~~~~~G~~lG~~yF~gLw~tvr~~~~~~~p-~~~~~~S~l~R~~l~~~~f~~~~~~~~----------~~lL~~l~G 70 (85)
T PF12966_consen 2 QLLLAFLAGLLLGALYFGGLWWTVRRLLASKRP-ALWFLLSFLLRLALVLAGFYLLAQGGW----------WRLLACLLG 70 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHHHHHhCCH----------HHHHHHHHH
Confidence 357889999999999999999999999543111 0001122 455555555555544332 678999999
Q ss_pred HHHHHHHHHHH
Q 019217 317 FFTYKIATFFQ 327 (344)
Q Consensus 317 FLTYK~AlLvq 327 (344)
|++.+..++..
T Consensus 71 F~~aR~i~~r~ 81 (85)
T PF12966_consen 71 FLLARFIVLRR 81 (85)
T ss_pred HHHHHHHHHHH
Confidence 99988877644
No 3
>PRK05760 F0F1 ATP synthase subunit I; Validated
Probab=92.61 E-value=1.7 Score=37.50 Aligned_cols=104 Identities=13% Similarity=0.122 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHH----HHHHHHhhHhhhc-cc-cccccCCCCCCCchHHHHHHH
Q 019217 216 KLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLV----YIRMLGSTVDSMA-AG-AKGLMKGAVGQPRLLVPVVLV 289 (344)
Q Consensus 216 ~Lll~Tl~ig~vg~~~~~l~yS~~~AlSyllGA~gGll----YLrLLarsVD~Lg-~~-~~g~~kgalgqpRLLVPV~Lv 289 (344)
+++..=++++.++++.+++..+.+.|.|+++|++.+++ |.+.+-|+...=. .. ...-.+|-.. .+++-++++
T Consensus 9 k~l~~Q~~~~l~~a~~~~~~~~~~~a~Sal~Ggl~~~lP~~~Fa~~~fr~~g~~~~~~i~~~fy~GE~~--K~~lTi~lf 86 (124)
T PRK05760 9 RLLLIQLVVVLVAALVLWVAVGPVWGYSALIGGLIAVLANAYFAHCAFRFSGARAAKAIVRSFYAGEAG--KIIITAVLF 86 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 34555556666666667777899999999999988765 4444444321100 00 0000011111 234445554
Q ss_pred HHHHHhhccccCCccccchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 019217 290 MIYNRWNEITVPEYGFLHLELIPMLVGFFTYKIATFFQAVEEAV 333 (344)
Q Consensus 290 v~a~rwn~i~~p~f~~~~LeLlP~llGFLTYK~AlLvqa~rdv~ 333 (344)
+++-+|-+ +++..+.|.||+ .++.++-+-+..
T Consensus 87 ~l~f~~~~---------~l~~~~lf~gf~---l~l~~~w~aP~~ 118 (124)
T PRK05760 87 ALAFAGVQ---------PLLPPLKFGTYL---LVLGVNWFAPLL 118 (124)
T ss_pred HHHHHHhc---------hhhHHHHHHHHH---HHHHHHHHHHHH
Confidence 44444422 355555555665 567766665543
No 4
>PRK06099 F0F1 ATP synthase subunit I; Validated
Probab=89.43 E-value=1 Score=39.41 Aligned_cols=87 Identities=18% Similarity=0.319 Sum_probs=46.2
Q ss_pred hhccCHHHHHHHHHHHHHHHH---HHHHHH-hhHhhhccccccccCCCCCCCchHHHHHHHHHHHHhhccccCCccccch
Q 019217 233 YISYSPEIAASFAAGLLGSLV---YIRMLG-STVDSMAAGAKGLMKGAVGQPRLLVPVVLVMIYNRWNEITVPEYGFLHL 308 (344)
Q Consensus 233 ~l~yS~~~AlSyllGA~gGll---YLrLLa-rsVD~Lg~~~~g~~kgalgqpRLLVPV~Lvv~a~rwn~i~~p~f~~~~L 308 (344)
+...|.+.|+|+++|++.+++ |.-+++ ++-.+-..-.+.-.+|-.+ + +++-+++++++=.|=. ++
T Consensus 30 ~~~~~~~~a~Sal~Ggli~~LPn~~Fa~~aF~~~~~~~~~~~sFy~GE~~-K-~ilTivlf~laf~~~~---------~~ 98 (126)
T PRK06099 30 LLIWQGQSAVSFLLGFLSAFLPFCLFVYWIFFRKQKNSSKLTAFYRGEAI-K-FILTIVLIVIAFKLLP---------VL 98 (126)
T ss_pred HHHhhHHHHHHHHHhhHHHHHhHHHHHHHHHHhccchHHHHHHHHHHhHH-H-HHHHHHHHHHHHHHhh---------hh
Confidence 345699999999999999874 444444 2211110000000111111 2 3444444444433321 38
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh
Q 019217 309 ELIPMLVGFFTYKIATFFQAVEEAV 333 (344)
Q Consensus 309 eLlP~llGFLTYK~AlLvqa~rdv~ 333 (344)
+.+|.++||+. +++++-+-+..
T Consensus 99 ~~~~lf~~y~l---~l~~~~~aP~~ 120 (126)
T PRK06099 99 HFIAFFVGFFI---ALVLNNLIPFI 120 (126)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHH
Confidence 99999888875 66666655543
No 5
>PRK08049 F0F1 ATP synthase subunit I; Validated
Probab=82.15 E-value=28 Score=30.55 Aligned_cols=84 Identities=17% Similarity=0.216 Sum_probs=45.4
Q ss_pred hhhccCHHHHHHHHHHHHHHHH---HHHHHH-hhHhhhccccccc-----cCCCCCCCchHHHHHHHHHHHHhhccccCC
Q 019217 232 AYISYSPEIAASFAAGLLGSLV---YIRMLG-STVDSMAAGAKGL-----MKGAVGQPRLLVPVVLVMIYNRWNEITVPE 302 (344)
Q Consensus 232 ~~l~yS~~~AlSyllGA~gGll---YLrLLa-rsVD~Lg~~~~g~-----~kgalgqpRLLVPV~Lvv~a~rwn~i~~p~ 302 (344)
+|...+.+.|+|.++|++..++ |.-+.. |+-.. ...++. ..|-. -.+++-+++++++-.|=+
T Consensus 28 ~~~~~~~~~~~Sal~Ggl~~~lPn~~Fa~~afr~~~~--~~a~~~v~~sFy~GE~--lK~~lTi~lf~~af~~~~----- 98 (124)
T PRK08049 28 LFSLKDPFWGVSALAGGLAAWLPNVLFMIFAWRHQAH--TPAKGRVAWSFAFGEA--LKVLATIALLVVALGVFK----- 98 (124)
T ss_pred HHHHcCHHHHHHHHHhhHHHHHhHHHHHHHHHHhccc--cchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHh-----
Confidence 4556799999999999998864 222111 21100 000000 00101 124555666666666633
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 019217 303 YGFLHLELIPMLVGFFTYKIATFFQAVEEA 332 (344)
Q Consensus 303 f~~~~LeLlP~llGFLTYK~AlLvqa~rdv 332 (344)
.+.+|.++||+. ++.++-+-+.
T Consensus 99 -----~~~~plf~ty~l---~L~~~~~aP~ 120 (124)
T PRK08049 99 -----AVFLPLGLTWLS---VLVVQILAPA 120 (124)
T ss_pred -----HHHHHHHHHHHH---HHHHHHHHHH
Confidence 457888888874 6666655443
No 6
>COG3312 AtpI F0F1-type ATP synthase, subunit I [Energy production and conversion]
Probab=77.41 E-value=23 Score=31.56 Aligned_cols=38 Identities=21% Similarity=0.251 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHH
Q 019217 214 KSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSL 252 (344)
Q Consensus 214 Kr~Lll~Tl~ig~vg~~~~~l~yS~~~AlSyllGA~gGl 252 (344)
+|+|++.-+++..+. ..++..++++.++|++.|+.+-+
T Consensus 12 ar~lLliql~~~iva-a~~f~v~~~~~~vSal~Ggla~~ 49 (128)
T COG3312 12 ARKLLLIQLLVVIVA-ALLFAVWQPQWGVSALLGGLAAF 49 (128)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHhccHHHH
Confidence 355666655544443 34555667999999999988765
No 7
>PF03030 H_PPase: Inorganic H+ pyrophosphatase; InterPro: IPR004131 Two types of proteins that hydrolyse inorganic pyrophosphate (PPi), very different in both amino acid sequence and structure, have been characterised to date: soluble and membrane-bound proton-pumping pyrophosphatases (sPPases and H(+)-PPases, respectively). sPPases are ubiquitous proteins that hydrolyse PPi to release heat, whereas H+-PPases, so far unidentified in animal and fungal cells, couple the energy of PPi hydrolysis to proton movement across biological membranes [, ]. The latter type is represented by this group of proteins. H+-PPases (3.6.1.1 from EC) are also called vacuolar-type inorganic pyrophosphatases (V-PPase) or pyrophosphate-energised vacuolar membrane proton pumps []. In plants, vacuoles contain two enzymes for acidifying the interior of the vacuole, the V-ATPase and the V-PPase (V is for vacuolar) []. Two distinct biochemical subclasses of H+-PPases have been characterised to date: K+-stimulated and K+-insensitive [, ]. For additional information please see [, ].; GO: 0004427 inorganic diphosphatase activity, 0009678 hydrogen-translocating pyrophosphatase activity, 0015992 proton transport, 0016020 membrane; PDB: 4A01_A.
Probab=57.01 E-value=29 Score=38.23 Aligned_cols=54 Identities=20% Similarity=0.215 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhc-----cCHHHHHHHHHHHHHHHH--HHHHHHh
Q 019217 207 QSKEQYFKSKLQFLTLGIGGVGLVSAYIS-----YSPEIAASFAAGLLGSLV--YIRMLGS 260 (344)
Q Consensus 207 ~~~eeYLKr~Lll~Tl~ig~vg~~~~~l~-----yS~~~AlSyllGA~gGll--YLrLLar 260 (344)
+--+-||||+.......+.+++.+..++. .+.-++++|++|++.|.+ |+-|.-.
T Consensus 34 eGA~aFL~reYk~i~~~~vi~~~ll~~~~~~~~~~~~~taiaFliGa~~S~laGyiGM~vA 94 (682)
T PF03030_consen 34 EGAMAFLKREYKTIAIFIVIVAILLFFLLGFLGGQGWWTAIAFLIGALCSALAGYIGMRVA 94 (682)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566799777666555555544443333 278999999999998865 7776654
No 8
>PRK00733 hppA membrane-bound proton-translocating pyrophosphatase; Validated
Probab=56.76 E-value=40 Score=37.16 Aligned_cols=54 Identities=19% Similarity=0.137 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhh----hhhccCHHHHHHHHHHHHHHHH--HHHHHHh
Q 019217 207 QSKEQYFKSKLQFLTLGIGGVGLVS----AYISYSPEIAASFAAGLLGSLV--YIRMLGS 260 (344)
Q Consensus 207 ~~~eeYLKr~Lll~Tl~ig~vg~~~----~~l~yS~~~AlSyllGA~gGll--YLrLLar 260 (344)
+--+-||||+..........++.+. .++..+..++++|++|++.|.+ |+-|.-.
T Consensus 20 eGA~afl~rqyk~i~~~~i~~~~~l~~~~~~~~~~~~~~~~Fl~Ga~~S~laG~iGM~ia 79 (666)
T PRK00733 20 EGAMAYLKRQYKTIAIFGVVVAVLLFLPAGGLFLGWLTAVAFLVGAVFSALAGYIGMRVA 79 (666)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788877666554444333333 1355677899999999998875 6666543
No 9
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=55.97 E-value=6.1 Score=38.31 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=19.5
Q ss_pred ccccCCcCccccccCCCCCCCC
Q 019217 34 KILLPKKKSMKWSTGVAPGEYG 55 (344)
Q Consensus 34 ~~~~p~~k~~~w~~g~~pg~yg 55 (344)
...+|..+|-.|=+|.-|||||
T Consensus 45 ~~w~Pg~~~P~~LdG~~pGD~G 66 (244)
T PLN00097 45 PTWLPGKAAAAHLDGSLPCDYG 66 (244)
T ss_pred cccCCCCCCccccCCCCCCCCC
Confidence 3567988999999999999998
No 10
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=54.86 E-value=49 Score=31.69 Aligned_cols=88 Identities=18% Similarity=0.270 Sum_probs=44.9
Q ss_pred hhHHHHHH-HHHHHHHHHHHHHHhhhh-hhccCHHHHHHHHHHHHHHHHHHHHHHhhH-hhhccccccccCCCCCCCchH
Q 019217 207 QSKEQYFK-SKLQFLTLGIGGVGLVSA-YISYSPEIAASFAAGLLGSLVYIRMLGSTV-DSMAAGAKGLMKGAVGQPRLL 283 (344)
Q Consensus 207 ~~~eeYLK-r~Lll~Tl~ig~vg~~~~-~l~yS~~~AlSyllGA~gGllYLrLLarsV-D~Lg~~~~g~~kgalgqpRLL 283 (344)
.++..|.. =.+++.|.++.++...|+ +..++.....+.++|.+-|++.+-+ .|.+ -++........+....-+|++
T Consensus 10 ~er~k~~~~G~~vl~ta~la~~s~~~a~~~~~~~~~~~ai~~glvwgl~I~~l-DR~ivss~~~~~~~~~~~~~~~~R~~ 88 (301)
T PF14362_consen 10 AERNKYAGIGAAVLFTALLAGLSGGYALYTVFGGPVWAAIPFGLVWGLVIFNL-DRFIVSSIRKSDGSRKRLLQALPRLL 88 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH-HHHHHhccccccchHHHHHHHHHHHH
Confidence 35667744 344445544444444443 4455566688888888888877643 2222 222111000000012356776
Q ss_pred HHHHHHHHHHHh
Q 019217 284 VPVVLVMIYNRW 295 (344)
Q Consensus 284 VPV~Lvv~a~rw 295 (344)
+-+++.++.+..
T Consensus 89 lAvliaivIs~p 100 (301)
T PF14362_consen 89 LAVLIAIVISEP 100 (301)
T ss_pred HHHHHHHHHHHH
Confidence 666666666654
No 11
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=53.73 E-value=35 Score=29.05 Aligned_cols=29 Identities=10% Similarity=0.055 Sum_probs=23.0
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhhHhh
Q 019217 236 YSPEIAASFAAGLLGSLVYIRMLGSTVDS 264 (344)
Q Consensus 236 yS~~~AlSyllGA~gGllYLrLLarsVD~ 264 (344)
...-.++..++|.+.|++++|++.|...+
T Consensus 95 ~e~~~~l~~l~~l~~~~~~~~~~~~~~~~ 123 (135)
T PF04246_consen 95 SELWAILGGLLGLALGFLILRLFDRRLKK 123 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 35666778888888899999999887765
No 12
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=53.54 E-value=41 Score=30.03 Aligned_cols=29 Identities=14% Similarity=0.147 Sum_probs=23.4
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhhHhh
Q 019217 236 YSPEIAASFAAGLLGSLVYIRMLGSTVDS 264 (344)
Q Consensus 236 yS~~~AlSyllGA~gGllYLrLLarsVD~ 264 (344)
...-++++.++|.+.||+++|++.+...+
T Consensus 102 ~e~~~~~~~~~g~~~g~~~~r~~~~~~~~ 130 (154)
T PRK10862 102 SDLAALCGALLGGVGGFLLARGLSRKLAA 130 (154)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34556677888999999999999988775
No 13
>PF04418 DUF543: Domain of unknown function (DUF543); InterPro: IPR007512 This family of short eukaryotic proteins has no known function. Most of the members of this family are only 80 amino acid residues long. However the Arabidopsis homologue is over 300 residues long. These proteins contain a conserved N-terminal cysteine and a conserved motif GXGXGXG in the carboxy terminal half that may be functionally important.
Probab=52.30 E-value=43 Score=27.11 Aligned_cols=43 Identities=19% Similarity=0.145 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHHHH
Q 019217 213 FKSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYI 255 (344)
Q Consensus 213 LKr~Lll~Tl~ig~vg~~~~~l~yS~~~AlSyllGA~gGllYL 255 (344)
|-.-|...++++++-++.++++|-+.-..+.+.+|.-.|.+|-
T Consensus 26 l~~~l~k~~~G~~~G~~~s~l~frrR~~pv~lG~G~G~G~aY~ 68 (75)
T PF04418_consen 26 LSDTLVKTGLGFGIGVVFSLLFFRRRAWPVALGAGFGIGMAYS 68 (75)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHccchHHHHhhcccccchhHH
Confidence 6688888888888888888888888777788888888888884
No 14
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=51.81 E-value=1.3e+02 Score=30.22 Aligned_cols=104 Identities=16% Similarity=0.165 Sum_probs=63.8
Q ss_pred hhHHHHH---H---HHHHHHHHHHHHHHhhhhhhccCH----HHHHHHHHHHHHHHHHHHHHHhhHhhh-ccc-cccccC
Q 019217 207 QSKEQYF---K---SKLQFLTLGIGGVGLVSAYISYSP----EIAASFAAGLLGSLVYIRMLGSTVDSM-AAG-AKGLMK 274 (344)
Q Consensus 207 ~~~eeYL---K---r~Lll~Tl~ig~vg~~~~~l~yS~----~~AlSyllGA~gGllYLrLLarsVD~L-g~~-~~g~~k 274 (344)
..-++|+ | -.|++.|...|.+.+.. ...++ -+.++-.+|+.++.+.=-...|+.|.+ .+. .+...+
T Consensus 16 ~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~--~~~~~~l~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~RP~~~ 93 (304)
T COG0109 16 STIKDYLQLTKPRVISLLLITAFAGMLLAPR--GSINPLLLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRKRPLVT 93 (304)
T ss_pred HHHHHHHHHhCCeeeehHHHHHHHHHHHccc--ccccHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccCCCCCC
Confidence 3556773 4 45666666666555542 22233 344555788889999999999999999 443 456677
Q ss_pred CCCCCCchHHHHHHHHHHHHhhccccCCccccchhHHHHHHHHHH
Q 019217 275 GAVGQPRLLVPVVLVMIYNRWNEITVPEYGFLHLELIPMLVGFFT 319 (344)
Q Consensus 275 galgqpRLLVPV~Lvv~a~rwn~i~~p~f~~~~LeLlP~llGFLT 319 (344)
|.+....-+..-.+..+++-.-. . +-...+++++|+++
T Consensus 94 G~i~p~~al~fgl~L~~~g~~~l------~-~~vn~laa~l~~~g 131 (304)
T COG0109 94 GLISPREALAFGLVLGVAGFSLL------W-FLVNLLAAVLGLFG 131 (304)
T ss_pred CccCHHHHHHHHHHHHHHHHHHH------H-HHHHHHHHHHHHHH
Confidence 77777666666544444443311 0 01456777777666
No 15
>COG3808 OVP1 Inorganic pyrophosphatase [Energy production and conversion]
Probab=49.86 E-value=45 Score=36.37 Aligned_cols=46 Identities=17% Similarity=0.112 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHH
Q 019217 207 QSKEQYFKSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSL 252 (344)
Q Consensus 207 ~~~eeYLKr~Lll~Tl~ig~vg~~~~~l~yS~~~AlSyllGA~gGl 252 (344)
+-..-||.|+-.....+...+.+...|++-+.++|+.|++|++.|-
T Consensus 46 eGA~ayL~rqy~tiavv~ivva~ll~~~l~~~~ta~~Fl~GAv~S~ 91 (703)
T COG3808 46 EGAMAYLARQYKTIAVVGIVVAILLAWFLLSWLTAIGFLLGAVLSA 91 (703)
T ss_pred HhHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3455678877665555555677777888888999999999998764
No 16
>COG4965 TadB Flp pilus assembly protein TadB [Intracellular trafficking and secretion]
Probab=48.76 E-value=59 Score=32.72 Aligned_cols=42 Identities=19% Similarity=0.135 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHHHHH
Q 019217 215 SKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYIR 256 (344)
Q Consensus 215 r~Lll~Tl~ig~vg~~~~~l~yS~~~AlSyllGA~gGllYLr 256 (344)
.+++..+++.+.+.+...|+..++.+++.+++|+++...|++
T Consensus 82 ~~~~~l~~~~~l~~~~v~~~~~~l~v~~~~~~~~~llp~~~~ 123 (309)
T COG4965 82 ARLILLSAGAGLAVALVAWLGLSLLVALVALIGAALLPRLVL 123 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888888999999999999999998887765
No 17
>PRK08378 hypothetical protein; Provisional
Probab=48.46 E-value=59 Score=27.46 Aligned_cols=46 Identities=24% Similarity=0.346 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhcc---CHHHHHHHHH--HHHHHHHHHHHHHh
Q 019217 215 SKLQFLTLGIGGVGLVSAYISY---SPEIAASFAA--GLLGSLVYIRMLGS 260 (344)
Q Consensus 215 r~Lll~Tl~ig~vg~~~~~l~y---S~~~AlSyll--GA~gGllYLrLLar 260 (344)
+.|+.....+++.++.++.+++ .+++|+..+. .++.+.+||.-|.+
T Consensus 26 rdLl~avi~~~~~sll~al~~~~L~APDVAltEAAVGAGlst~l~l~al~~ 76 (93)
T PRK08378 26 RDLLAAAVGMAAVSLFASLEFFMLQAPDVAMAEAAIGAALSTAVVIFAIKR 76 (93)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 6777777777776666665555 5999999887 57788888888865
No 18
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=47.05 E-value=1.1e+02 Score=26.66 Aligned_cols=29 Identities=14% Similarity=0.187 Sum_probs=15.0
Q ss_pred CHHHHHHHHHHHHHHHH----HHHHHHhhHhhh
Q 019217 237 SPEIAASFAAGLLGSLV----YIRMLGSTVDSM 265 (344)
Q Consensus 237 S~~~AlSyllGA~gGll----YLrLLarsVD~L 265 (344)
+.+.+.-.++|.++|++ =+-++.++..++
T Consensus 106 ~~~~~~Rvllgl~~al~vlvAEv~l~~~y~~k~ 138 (142)
T PF11712_consen 106 GWSFPYRVLLGLFGALLVLVAEVVLYIRYLRKV 138 (142)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44566556666555544 334455554444
No 19
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=46.62 E-value=62 Score=32.11 Aligned_cols=70 Identities=17% Similarity=0.076 Sum_probs=32.9
Q ss_pred ChHHHHhHhhhhhhccCCCcchhccccCCCCChHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHH
Q 019217 169 TRREQDKWDKATKAATGGSDVMFRELRKPRGDPEVLAAQSKEQYFKSKLQFLTLGIGGVGLVSAYISYSPEIAASFA 245 (344)
Q Consensus 169 Tr~E~~~w~ra~ka~~~g~~v~~re~~~~~~dp~~~aa~~~eeYLKr~Lll~Tl~ig~vg~~~~~l~yS~~~AlSyl 245 (344)
.|||+...+|..+-.+.+.+....+.+.+.-|-+..++|+ .+|+...+.++++ .+..|+..+.-.|+||+
T Consensus 265 ~kR~~~~aqr~~~e~~~~~e~~~~~~ee~~ldl~~I~~Qs------lrL~~~~l~~~~~-~~l~~iWsdll~a~s~L 334 (340)
T PF12794_consen 265 EKRAEALAQREAEEEESSEEGGAEEVEEPELDLEQISQQS------LRLLRSILLLILL-VGLYWIWSDLLPAFSYL 334 (340)
T ss_pred HHHHHHHHhhhcccccCCccccCCCcCCcccCHHHHHHHH------HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 3555555555511111233322224444444444433322 3344444433333 33556666788889886
No 20
>TIGR03165 F1F0_chp_2 F1/F0 ATPase, Methanosarcina type, subunit 2. Members of this protein family are uncharacterized, highly hydrophobic proteins encoded in the middle of apparent F1/F0 ATPase operons. We note, however, that this protein is both broadly and sparsely distributed. It is found in about only about two percent of microbial genomes sequenced, with the first ten examples found coming from the Euryarchaeota, Chlorobia, Betaproteobacteria, Deltaproteobacteria, and Planctomycetes. In most of these species, surrounding operon appears to represent a second F1/F0 ATPase system, and the member proteins belong to subfamilies with the same phylogenetic distribution as the current protein family.
Probab=46.37 E-value=1.7e+02 Score=24.28 Aligned_cols=68 Identities=28% Similarity=0.378 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhhccccccccCCCCCCCchHHH--------HHHHHHH--HHhhccccCCccccch
Q 019217 239 EIAASFAAGLLGSLVYIRMLGSTVDSMAAGAKGLMKGAVGQPRLLVP--------VVLVMIY--NRWNEITVPEYGFLHL 308 (344)
Q Consensus 239 ~~AlSyllGA~gGllYLrLLarsVD~Lg~~~~g~~kgalgqpRLLVP--------V~Lvv~a--~rwn~i~~p~f~~~~L 308 (344)
+.+..+++|.+.|.+|..-|--.|-++..+ .+|.+++. +++..++ ++.+ -.
T Consensus 2 ~~~~~l~~G~~lG~~~F~gLw~tvr~~~~~---------~~Pa~l~~~S~llR~a~~l~gf~~la~~g----------~~ 62 (83)
T TIGR03165 2 TLLLALLAGFLLGAFFFGGLWWTVRKGLAS---------RRPALLFLGSLLLRTALVLAGFYFLARGG----------WR 62 (83)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhccC---------cCcHHHHHHHHHHHHHHHHHHHHHHHcCC----------HH
Confidence 357789999999999999999999998532 24444432 1111111 1211 15
Q ss_pred hHHHHHHHHHHHHHHHH
Q 019217 309 ELIPMLVGFFTYKIATF 325 (344)
Q Consensus 309 eLlP~llGFLTYK~AlL 325 (344)
-++-.++||+.-+..++
T Consensus 63 ~lL~~~~GF~~aR~~~~ 79 (83)
T TIGR03165 63 RLLAALLGFFAARVLAV 79 (83)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67888899998776654
No 21
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=45.37 E-value=70 Score=28.36 Aligned_cols=40 Identities=20% Similarity=0.208 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhhhhhhccC--HHHHHHHHHHHHHHHHHHHHH
Q 019217 219 FLTLGIGGVGLVSAYISYS--PEIAASFAAGLLGSLVYIRML 258 (344)
Q Consensus 219 l~Tl~ig~vg~~~~~l~yS--~~~AlSyllGA~gGllYLrLL 258 (344)
...++.++.+++++.++.+ .+..+++++|.+++++...+-
T Consensus 105 ~~~l~~~l~~~~fa~lfgg~~~~~~~a~i~g~~~~~~~~~~~ 146 (193)
T PF06738_consen 105 LVILAAGLASAAFALLFGGSWIDMIVAFILGLLVGLLRQLLS 146 (193)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555554 788889999999888776643
No 22
>TIGR01104 V_PPase vacuolar-type H(+)-translocating pyrophosphatase. This model describes proton pyrophosphatases from eukaryotes (predominantly plants), archaea and bacteria. It is an integral membrane protein and is suggested to have about 15 membrane spanning domains. Proton translocating inorganic pyrophosphatase, like H(+)-ATPase, acidifies the vacuoles and is pivotal to the vacuolar secondary active transport systems in plants.
Probab=44.50 E-value=80 Score=35.12 Aligned_cols=51 Identities=12% Similarity=0.318 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhccCH------HHHHHHHHHHHHHHH--HHHHH
Q 019217 207 QSKEQYFKSKLQFLTLGIGGVGLVSAYISYSP------EIAASFAAGLLGSLV--YIRML 258 (344)
Q Consensus 207 ~~~eeYLKr~Lll~Tl~ig~vg~~~~~l~yS~------~~AlSyllGA~gGll--YLrLL 258 (344)
+--+-||||+.......+..++.+. +++++. .++++|++|+++|.+ |+-|-
T Consensus 44 eGA~afL~rqyk~i~~~~vi~~v~l-~~~~~~~~~~~~~~a~~Fl~Ga~~S~laG~iGM~ 102 (697)
T TIGR01104 44 EGATAFLFTEYKYVAVFMVAFAVLI-FVFLGSREGFSDFSTVAFLLGAVTSLLAGYLGMK 102 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcccccchhHHHHHHHHHHHHHHHHHHhhhH
Confidence 4566789987766655444443333 233332 799999999998865 55554
No 23
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=43.30 E-value=28 Score=34.14 Aligned_cols=21 Identities=29% Similarity=0.798 Sum_probs=19.0
Q ss_pred cccCCcCccccccCCCCCCCC
Q 019217 35 ILLPKKKSMKWSTGVAPGEYG 55 (344)
Q Consensus 35 ~~~p~~k~~~w~~g~~pg~yg 55 (344)
..+|..++-.|-+|.-|||||
T Consensus 44 ~w~p~~~~P~yLdG~lPGD~G 64 (262)
T PLN00048 44 LWFASKQSLSYLDGTLPGDFG 64 (262)
T ss_pred eecCCCCCccccCCCCCCccC
Confidence 456999999999999999998
No 24
>PRK09917 hypothetical protein; Provisional
Probab=38.68 E-value=2.1e+02 Score=25.77 Aligned_cols=93 Identities=16% Similarity=0.204 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccccCCCCCCCchHHHHHHHHHHHHhhcc
Q 019217 219 FLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYIRMLGSTVDSMAAGAKGLMKGAVGQPRLLVPVVLVMIYNRWNEI 298 (344)
Q Consensus 219 l~Tl~ig~vg~~~~~l~yS~~~AlSyllGA~gGllYLrLLarsVD~Lg~~~~g~~kgalgqpRLLVPV~Lvv~a~rwn~i 298 (344)
.....+++++|+..|=.---..-.+-+.|++|=.+|+.++.-.++..-.. .-.- ++--++....+||..
T Consensus 14 ~~~a~ia~~gFailfn~P~r~l~~~~i~G~vgw~vy~~~~~~~~~~~~as---------fiaa-~~igl~s~~~Ar~~k- 82 (157)
T PRK09917 14 MILAAIPAVGFAMVFNVPVRALRWCALLGAIGHGSRMLMMTSGLNIEWST---------FMAS-MLVGTIGIQWSRWYL- 82 (157)
T ss_pred HHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH---------HHHH-HHHHHHHHHHHHHhC-
Confidence 34455566666555555456666777888888899996653223222110 0000 122233344556654
Q ss_pred ccCCccccchhHHHHHHHHHHHHHH
Q 019217 299 TVPEYGFLHLELIPMLVGFFTYKIA 323 (344)
Q Consensus 299 ~~p~f~~~~LeLlP~llGFLTYK~A 323 (344)
.|-.-|.=--++|+.=|...|+.-
T Consensus 83 -~P~tvf~ip~iiPLVPG~~~Y~~m 106 (157)
T PRK09917 83 -AHPKVFTVAAVIPMFPGISAYTAM 106 (157)
T ss_pred -CCCEEeeHhhHHhcCCCHHHHHHH
Confidence 443223336788888888899854
No 25
>PF04148 Erv26: Transmembrane adaptor Erv26; InterPro: IPR007277 Erv26 is an integral membrane protein that is packed into COPII vesicles and cycles between the ER and Golgi compartments. It directs pro-alkaline phosphatase into endoplasmic reticulum-derived COPII transport vesicles [].
Probab=37.15 E-value=1.5e+02 Score=28.48 Aligned_cols=77 Identities=18% Similarity=0.171 Sum_probs=51.2
Q ss_pred HhhHHHH--HHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccccCCCCCCCchH
Q 019217 206 AQSKEQY--FKSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYIRMLGSTVDSMAAGAKGLMKGAVGQPRLL 283 (344)
Q Consensus 206 a~~~eeY--LKr~Lll~Tl~ig~vg~~~~~l~yS~~~AlSyllGA~gGllYLrLLarsVD~Lg~~~~g~~kgalgqpRLL 283 (344)
+|--||| +-++.+..++....+.-+..+++-+...- .-++|.+.-++|+++| |.-=-+ .+.+|.++
T Consensus 31 sElVEEht~~akril~~~I~~ii~~~vlL~~~D~~P~~-~~l~si~s~~~Y~~~L-~~fP~i----------~ltsp~Fi 98 (211)
T PF04148_consen 31 SELVEEHTVLAKRILKRLIYFIIALHVLLLLFDGFPFW-LTLFSIFSHLVYLRNL-RTFPFI----------SLTSPSFI 98 (211)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHHHh-CCCCee----------ecCCHHHH
Confidence 3567888 44667766666666666666666665544 5568999999999999 333322 25678788
Q ss_pred HHHHHHHHHHHh
Q 019217 284 VPVVLVMIYNRW 295 (344)
Q Consensus 284 VPV~Lvv~a~rw 295 (344)
.-++++ +.+.|
T Consensus 99 ~S~~lv-i~nH~ 109 (211)
T PF04148_consen 99 LSCVLV-ILNHF 109 (211)
T ss_pred HHHHHH-HHHHH
Confidence 877775 45543
No 26
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=36.51 E-value=1.2e+02 Score=27.86 Aligned_cols=51 Identities=20% Similarity=0.202 Sum_probs=33.9
Q ss_pred HHHHHHHH-----HHHHHHHHhhhhhhccC-HHHHHHHHHHHHHHHHHHHHHHhhHhhh
Q 019217 213 FKSKLQFL-----TLGIGGVGLVSAYISYS-PEIAASFAAGLLGSLVYIRMLGSTVDSM 265 (344)
Q Consensus 213 LKr~Lll~-----Tl~ig~vg~~~~~l~yS-~~~AlSyllGA~gGllYLrLLarsVD~L 265 (344)
||..++.| ++.++++.+ -+++.+ .-+++..++|.+.|++-+|-..|....-
T Consensus 75 L~sA~LvYi~PL~~l~v~~~La--~~L~~~e~~~~~~~~lg~~l~fl~~r~ysRkl~~~ 131 (150)
T COG3086 75 LKSALLVYIFPLVGLFLGAILA--QYLFFSELIVIFGAFLGLALGFLLARRYSRKLAKR 131 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 56555544 344444443 344444 7788889999999999988888876654
No 27
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=35.46 E-value=1e+02 Score=27.86 Aligned_cols=34 Identities=12% Similarity=0.253 Sum_probs=22.0
Q ss_pred HHHHHHHhhhhhhccCHHHHHHHHHHHHHHHHHH
Q 019217 222 LGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYI 255 (344)
Q Consensus 222 l~ig~vg~~~~~l~yS~~~AlSyllGA~gGllYL 255 (344)
+.+++++++..++.++...-++.++|++++++..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 48 (199)
T PF10112_consen 15 VLIAAITFLVSFFGFDHSFLLSLLIGAVAFAVVY 48 (199)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3445555556666667777777777777766643
No 28
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=33.86 E-value=1.3e+02 Score=26.13 Aligned_cols=46 Identities=24% Similarity=0.117 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhccC-----HHHH-HHHHHHHHHHHHHHHHHHh
Q 019217 215 SKLQFLTLGIGGVGLVSAYISYS-----PEIA-ASFAAGLLGSLVYIRMLGS 260 (344)
Q Consensus 215 r~Lll~Tl~ig~vg~~~~~l~yS-----~~~A-lSyllGA~gGllYLrLLar 260 (344)
|+=+++.++-|+++.+..|++-+ .|.| .+|++|+++++-|-|...+
T Consensus 41 R~slL~Gi~~G~~vG~~~fl~~~~~~~A~nwavgsF~l~s~~~we~Cr~~r~ 92 (118)
T PF12597_consen 41 RDSLLYGIAGGFGVGGLRFLFTSNPRKAANWAVGSFFLGSLGSWEYCRYNRR 92 (118)
T ss_pred HHHHHHHHHHHHHHHhhhhcccCCCccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666664 2333 4788888999999887543
No 29
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=33.50 E-value=30 Score=33.69 Aligned_cols=21 Identities=29% Similarity=0.664 Sum_probs=17.4
Q ss_pred cccCCcCccccccCCCCCCCC
Q 019217 35 ILLPKKKSMKWSTGVAPGEYG 55 (344)
Q Consensus 35 ~~~p~~k~~~w~~g~~pg~yg 55 (344)
..+|--++-.|=+|.-||+||
T Consensus 37 ~W~P~~~~P~~Ldg~~pGd~G 57 (246)
T PLN00100 37 MWYPGATAPKYLDGTMAGDYG 57 (246)
T ss_pred ccCCCCCCCCCCCCCCCCCcC
Confidence 456877777889999999997
No 30
>PF13244 DUF4040: Domain of unknown function (DUF4040)
Probab=32.78 E-value=1.6e+02 Score=23.15 Aligned_cols=46 Identities=20% Similarity=0.405 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHhhhh--hhccC-HHHHHHH-HHHH-HHHHHHHHHHHh
Q 019217 215 SKLQFLTLGIGGVGLVSA--YISYS-PEIAASF-AAGL-LGSLVYIRMLGS 260 (344)
Q Consensus 215 r~Lll~Tl~ig~vg~~~~--~l~yS-~~~AlSy-llGA-~gGllYLrLLar 260 (344)
++++..-+.+|.+++..+ |+.++ ++.|+.. ++|+ +..++|+.-|.|
T Consensus 15 ~~~l~avi~~~~~g~~~al~f~~l~APDVAlTe~~Vg~gl~~~l~~~al~~ 65 (70)
T PF13244_consen 15 RSRLAAVIALGVFGFLIALLFVLLGAPDVALTEAAVGTGLTTVLFLLALRK 65 (70)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 455555555555555444 44444 8999885 5788 888888877765
No 31
>PF00584 SecE: SecE/Sec61-gamma subunits of protein translocation complex; InterPro: IPR001901 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. SecE, part of the main SecYEG translocase complex, is ~106 residues in length, and spans the inner membrane of the Gram-negative bacterial envelope. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. In eukaryotes, the evolutionary related protein sec61-gamma plays a role in protein translocation through the endoplasmic reticulum; it is part of a trimeric complex that also consist of sec61-alpha and beta []. Both secE and sec61-gamma are small proteins of about 60 to 90 amino acids that contain a single transmembrane region at their C-terminal extremity (Escherichia coli secE is an exception, in that it possess an extra N-terminal segment of 60 residues that contains two additional transmembrane domains) [].; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0016020 membrane; PDB: 3J01_B 2WW9_B 2WWA_B 3DL8_C 2WWB_B 3DIN_G 2ZJS_E 2ZQP_E.
Probab=31.69 E-value=74 Score=23.42 Aligned_cols=35 Identities=11% Similarity=0.071 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHH
Q 019217 214 KSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGL 248 (344)
Q Consensus 214 Kr~Lll~Tl~ig~vg~~~~~l~yS~~~AlSyllGA 248 (344)
+++++.+|..+..+..+...+++..+..+++++..
T Consensus 21 ~~e~~~~t~~Vl~~~~i~~~~~~~vD~~~~~~~~~ 55 (57)
T PF00584_consen 21 RKELLKSTIIVLVFVIIFGLFFFLVDLIFSWLLNL 55 (57)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48888888888888888888888888888887654
No 32
>PLN02277 H(+) -translocating inorganic pyrophosphatase
Probab=29.52 E-value=1.9e+02 Score=32.52 Aligned_cols=52 Identities=23% Similarity=0.233 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhc------------------cCHHHHHHHHHHHHHHHH--HHHHH
Q 019217 207 QSKEQYFKSKLQFLTLGIGGVGLVSAYIS------------------YSPEIAASFAAGLLGSLV--YIRML 258 (344)
Q Consensus 207 ~~~eeYLKr~Lll~Tl~ig~vg~~~~~l~------------------yS~~~AlSyllGA~gGll--YLrLL 258 (344)
+--+-||||+-......+..++.+..+++ .+.-.+++|++|++.|.+ |+-|-
T Consensus 36 eGA~afL~~qyk~i~~~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Fl~Ga~~S~laG~iGM~ 107 (730)
T PLN02277 36 DGAEGFFRTQYGTISKMAVVLAFVILGIYLFRSLTPQQEAAGLGRATSAYITVASFLLGALCSGIAGYVGMW 107 (730)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 45567788776655544433333222211 113588999999998865 55554
No 33
>PRK07597 secE preprotein translocase subunit SecE; Reviewed
Probab=28.41 E-value=87 Score=23.81 Aligned_cols=34 Identities=15% Similarity=-0.043 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHH
Q 019217 214 KSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAG 247 (344)
Q Consensus 214 Kr~Lll~Tl~ig~vg~~~~~l~yS~~~AlSyllG 247 (344)
++++..+|+.+.++..+.+.+++..+..++++++
T Consensus 29 ~~e~~~~t~~Vi~~~~~~~~~i~~vD~~~~~~~~ 62 (64)
T PRK07597 29 RKELVRSTIVVLVFVAFFALFFYLVDLLFSKLIS 62 (64)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3888899988888888888888888888888765
No 34
>PLN02975 complex I subunit
Probab=27.54 E-value=84 Score=26.83 Aligned_cols=42 Identities=24% Similarity=0.470 Sum_probs=28.1
Q ss_pred HHHHHHHhhhhhhcc------CHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Q 019217 222 LGIGGVGLVSAYISY------SPEIAASFAAGLLGSLVYIRMLGSTVDSM 265 (344)
Q Consensus 222 l~ig~vg~~~~~l~y------S~~~AlSyllGA~gGllYLrLLarsVD~L 265 (344)
++++++++...|++. .+-.-++-+||.+||++|.. ++|-.++
T Consensus 35 a~~ta~s~~~~~~~~~~~~~~~~~mr~ag~iG~~gGf~~aY--q~S~~Rf 82 (97)
T PLN02975 35 ATITGVSVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFMYAY--QNSAGRL 82 (97)
T ss_pred HHHHHHHHHHHHHHccCccccchHHHHHHHHHHhhhHHhhh--cccchhh
Confidence 345555555555544 56777888999999999853 4555555
No 35
>COG4818 Predicted membrane protein [Function unknown]
Probab=27.05 E-value=61 Score=28.05 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019217 238 PEIAASFAAGLLGSLVYIRM 257 (344)
Q Consensus 238 ~~~AlSyllGA~gGllYLrL 257 (344)
.+.|+||++|-+.|+++|.|
T Consensus 5 iegaLCY~lgwitGllFlll 24 (105)
T COG4818 5 IEGALCYLLGWITGLLFLLL 24 (105)
T ss_pred hhhHHHHHHHHHHHHHHHHh
Confidence 46799999999999999865
No 36
>TIGR00964 secE_bact preprotein translocase, SecE subunit, bacterial. This model represents exclusively the bacterial (and some organellar) SecE protein. SecE is part of the core heterotrimer, SecYEG, of the Sec preprotein translocase system. Other components are the ATPase SecA, a cytosolic chaperone SecB, and an accessory complex of SecDF and YajC.
Probab=26.87 E-value=97 Score=23.03 Aligned_cols=35 Identities=6% Similarity=-0.052 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHH
Q 019217 213 FKSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAG 247 (344)
Q Consensus 213 LKr~Lll~Tl~ig~vg~~~~~l~yS~~~AlSyllG 247 (344)
=|+++..+|+.+..+..+.+.+++..+..+++++.
T Consensus 19 t~~e~~~~t~~Vi~~~~~~~~~~~~~D~~~~~~~~ 53 (55)
T TIGR00964 19 SRKELITYTIVVIVFVIFFSLFLFGVDYVFGKLIS 53 (55)
T ss_pred CHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34888889988888888888888888888877763
No 37
>PF14108 DUF4281: Domain of unknown function (DUF4281)
Probab=24.42 E-value=1e+02 Score=26.83 Aligned_cols=76 Identities=18% Similarity=0.315 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhhcccc---c---cccCCCCCCCchHHH-----HHHHHHHHHhhccccCCccccc
Q 019217 239 EIAASFAAGLLGSLVYIRMLGSTVDSMAAGA---K---GLMKGAVGQPRLLVP-----VVLVMIYNRWNEITVPEYGFLH 307 (344)
Q Consensus 239 ~~AlSyllGA~gGllYLrLLarsVD~Lg~~~---~---g~~kgalgqpRLLVP-----V~Lvv~a~rwn~i~~p~f~~~~ 307 (344)
...-|..+=.+.+++|.-++..+.+.-.... . .++++-.+++..+.. ++.=++++||-..++.+.++.+
T Consensus 29 ~~~~s~~~~~~l~~~Y~~ll~~~~~~~~~~~~~~~~sL~~v~~lf~~~~~~~~~W~H~LafDLfvGrwi~~d~~~~gi~~ 108 (129)
T PF14108_consen 29 RLMRSPVPPLPLALAYVALLAPSLGPSGLGVMAAFPSLEGVRQLFSSPNAVLAGWVHYLAFDLFVGRWIYLDARRRGIPH 108 (129)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHcCccchhhhccCCCHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 4566677777888999999999888774321 1 122334455555554 3555678899665566677766
Q ss_pred hhHHHHH
Q 019217 308 LELIPML 314 (344)
Q Consensus 308 LeLlP~l 314 (344)
+...|.+
T Consensus 109 ~~~~~~L 115 (129)
T PF14108_consen 109 LLTAPSL 115 (129)
T ss_pred chHHHHH
Confidence 6666633
No 38
>KOG2890 consensus Predicted membrane protein [Function unknown]
Probab=23.29 E-value=57 Score=33.12 Aligned_cols=29 Identities=21% Similarity=0.179 Sum_probs=24.0
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 019217 235 SYSPEIAASFAAGLLGSLVYIRMLGSTVD 263 (344)
Q Consensus 235 ~yS~~~AlSyllGA~gGllYLrLLarsVD 263 (344)
++....=.++.+|...|+.|||..+++-.
T Consensus 194 f~~f~~l~s~~~g~~~sWtYLRfyq~h~~ 222 (326)
T KOG2890|consen 194 FLVFASLPSITFGVLVSWTYLRFYQRHPT 222 (326)
T ss_pred HHHhhhhHHHHHhhhhhhhhheecccCCc
Confidence 44445557899999999999999999984
No 39
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=22.84 E-value=3.9e+02 Score=26.16 Aligned_cols=79 Identities=13% Similarity=0.139 Sum_probs=48.7
Q ss_pred CcchhccccCCCCChHHHHH-hh-HH--HHHHHHH-HHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHHHHHHHHhh
Q 019217 187 SDVMFRELRKPRGDPEVLAA-QS-KE--QYFKSKL-QFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYIRMLGST 261 (344)
Q Consensus 187 ~~v~~re~~~~~~dp~~~aa-~~-~e--eYLKr~L-ll~Tl~ig~vg~~~~~l~yS~~~AlSyllGA~gGllYLrLLars 261 (344)
+.|+++.-.+...+.++.|. .+ +| +|+...| .+.|..++.+|++...+++..-.+++.++..+.-.+-+-.-.+.
T Consensus 82 ~~vi~~qr~~~~~~S~i~ARv~lsRE~VdFfE~~lP~lits~vsivga~vmLl~~e~~~g~~~l~~l~~~~~i~~~f~~~ 161 (237)
T PF13748_consen 82 VPVILSQRQQGLSVSTIAARVALSREFVDFFEQHLPTLITSVVSIVGAAVMLLVFEFWLGLACLLILALFLLILPRFARR 161 (237)
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555443444555555553 22 22 3377777 88899999999999999999888877665544443333333444
Q ss_pred Hhhh
Q 019217 262 VDSM 265 (344)
Q Consensus 262 VD~L 265 (344)
-+++
T Consensus 162 ~~~L 165 (237)
T PF13748_consen 162 NYRL 165 (237)
T ss_pred HHHH
Confidence 4444
No 40
>PF02517 Abi: CAAX protease self-immunity; InterPro: IPR003675 Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide is removed by one of the CAAX prenyl proteases). The family contains the Q03530 from SWISSPROT CAAX prenyl protease []. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding []. While these proteins are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity []. This family also includes lysostaphin resistance protein A [].; GO: 0016020 membrane
Probab=22.36 E-value=2.2e+02 Score=21.71 Aligned_cols=37 Identities=22% Similarity=0.347 Sum_probs=24.7
Q ss_pred HHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHHHHH
Q 019217 220 LTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYIR 256 (344)
Q Consensus 220 ~Tl~ig~vg~~~~~l~yS~~~AlSyllGA~gGllYLr 256 (344)
....++++.++..-+..+......+.+|.+.|++|.+
T Consensus 38 ~a~~is~~~f~~~H~~~~~~~~~~~~~g~~~~~~~~~ 74 (91)
T PF02517_consen 38 FAILISSLLFALWHLPNGPQFIYAFLFGLLFGYLYLR 74 (91)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 4455556666555555555577788888888888874
No 41
>COG0344 Predicted membrane protein [Function unknown]
Probab=22.09 E-value=93 Score=29.55 Aligned_cols=32 Identities=19% Similarity=0.452 Sum_probs=26.2
Q ss_pred HHHHHHHHHH-HHHHHHHHHH-hhHhhhcccccc
Q 019217 240 IAASFAAGLL-GSLVYIRMLG-STVDSMAAGAKG 271 (344)
Q Consensus 240 ~AlSyllGA~-gGllYLrLLa-rsVD~Lg~~~~g 271 (344)
.+++|++|++ .|+++.|.+. .++...|+++.|
T Consensus 9 l~~~YLlGSIp~g~ii~k~~~~~D~R~~GSgN~G 42 (200)
T COG0344 9 LLIAYLLGSIPFGLIISKIFGGIDVRKIGSGNPG 42 (200)
T ss_pred HHHHHHhcchhHHHHHHHHhCCCCccccCCCCCC
Confidence 4567999987 6899999998 999999876644
No 42
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=21.71 E-value=1.3e+02 Score=29.35 Aligned_cols=21 Identities=33% Similarity=0.514 Sum_probs=15.7
Q ss_pred cccCCcCccccccCCCCCCCC
Q 019217 35 ILLPKKKSMKWSTGVAPGEYG 55 (344)
Q Consensus 35 ~~~p~~k~~~w~~g~~pg~yg 55 (344)
..+|--++-.|=+|.-||+||
T Consensus 55 ~W~P~~~~P~~LdG~~PGD~G 75 (250)
T PLN00101 55 EWLPGLASPGYLNGSLPGDNG 75 (250)
T ss_pred ccCCCCCCCcccCCCCCCccC
Confidence 456766666778888888887
No 43
>PLN02720 complex II
Probab=21.43 E-value=1.7e+02 Score=26.60 Aligned_cols=48 Identities=15% Similarity=0.171 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhccC---HHHHHHHHHHHHHHHHHHHHHHhhH
Q 019217 215 SKLQFLTLGIGGVGLVSAYISYS---PEIAASFAAGLLGSLVYIRMLGSTV 262 (344)
Q Consensus 215 r~Lll~Tl~ig~vg~~~~~l~yS---~~~AlSyllGA~gGllYLrLLarsV 262 (344)
...-++..++|++.+..+.+-|| .-+++||+.|++.|.+.=.=++.+-
T Consensus 66 ~~fa~~Ga~vGa~~tag~a~kysk~phga~lsfl~G~~~G~~~G~EvAnh~ 116 (140)
T PLN02720 66 ATFAVTGAAVGAVSTAGVAWKYSKSPHGAALAFLGGGVFGWAFGQEVANHW 116 (140)
T ss_pred HHHHhhhhhhhhhhhhHHHHHhhcCCchHHHHHhccchhhhhHhHHHHHHH
Confidence 34445667888888888888887 5689999999999988655444443
No 44
>COG0690 SecE Preprotein translocase subunit SecE [Intracellular trafficking and secretion]
Probab=21.43 E-value=1.4e+02 Score=23.67 Aligned_cols=45 Identities=11% Similarity=-0.054 Sum_probs=32.6
Q ss_pred HHHHHhhHHHH------HHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHH
Q 019217 202 EVLAAQSKEQY------FKSKLQFLTLGIGGVGLVSAYISYSPEIAASFAA 246 (344)
Q Consensus 202 ~~~aa~~~eeY------LKr~Lll~Tl~ig~vg~~~~~l~yS~~~AlSyll 246 (344)
.....+.++|. -++++..+|+.+-.++++...++|+.+..++.++
T Consensus 21 ~~f~~~~~~E~~KV~WPsrke~~~~t~~Vl~~v~~~s~~~~~~D~l~~~~i 71 (73)
T COG0690 21 FNFFKEVRKELKKVVWPTRKELIRSTLIVLVVVAFFSLFLYGLDQLIGKLV 71 (73)
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334455555 4489999999888888888888888887776653
No 45
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=21.36 E-value=1.9e+02 Score=28.39 Aligned_cols=47 Identities=26% Similarity=0.418 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhh---ccCH-HHHHHHHHHHHHHHHHHH
Q 019217 209 KEQYFKSKLQFLTLGIGGVGLVSAYI---SYSP-EIAASFAAGLLGSLVYIR 256 (344)
Q Consensus 209 ~eeYLKr~Lll~Tl~ig~vg~~~~~l---~yS~-~~AlSyllGA~gGllYLr 256 (344)
...=++.++...++.+.+++..+.|+ .|++ ..-..|++| .+++.-.|
T Consensus 37 ~l~~~~~r~tv~slAl~~l~~S~iy~~~~~y~~~~~It~~llg-s~slymfr 87 (251)
T COG5415 37 ILSQWQSRLTVYSLALTVLALSYIYWEYHGYRPYLVITALLLG-SGSLYMFR 87 (251)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhhccccchhHHHHHHHHh-hhHHHHHH
Confidence 33335577888888888888877776 2454 444456666 44443333
No 46
>PF07954 DUF1689: Protein of unknown function (DUF1689) ; InterPro: IPR012470 Family of fungal proteins with unknown function. A member of this family has been found to localise in the mitochondria [].
Probab=21.01 E-value=2.8e+02 Score=25.29 Aligned_cols=66 Identities=21% Similarity=0.188 Sum_probs=36.4
Q ss_pred cccCCCCChHHHHHhhHHHH----HHHHHHHHHHHHHHHHhhhhhhcc------CHHHHH-----HHHHHHHHHHHHHHH
Q 019217 193 ELRKPRGDPEVLAAQSKEQY----FKSKLQFLTLGIGGVGLVSAYISY------SPEIAA-----SFAAGLLGSLVYIRM 257 (344)
Q Consensus 193 e~~~~~~dp~~~aa~~~eeY----LKr~Lll~Tl~ig~vg~~~~~l~y------S~~~Al-----SyllGA~gGllYLrL 257 (344)
|..+..+..+|. +..++| .+..+.-++.++++++.-.+|-.| +..... ||++|.++-++--.+
T Consensus 9 EaD~~L~~~DR~--eL~~~~q~i~~~~~~~g~~~~~~gF~~Pt~y~~yk~~~~~gv~~~~~~pflSf~lG~~~m~~~~~~ 86 (152)
T PF07954_consen 9 EADQKLDHEDRL--ELAKDLQSIARKSNLGGYGGFMAGFFAPTAYYRYKTGAIKGVPVPRQKPFLSFLLGLGAMMAGSQL 86 (152)
T ss_pred HhhccCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcccccCCcCCccCcchhHHHHHHHHHHHHHH
Confidence 444434333433 245555 335555556666666666666555 344445 888888777665554
Q ss_pred HHh
Q 019217 258 LGS 260 (344)
Q Consensus 258 Lar 260 (344)
-++
T Consensus 87 ~~k 89 (152)
T PF07954_consen 87 AGK 89 (152)
T ss_pred HHH
Confidence 443
No 47
>PF10947 DUF2628: Protein of unknown function (DUF2628) ; InterPro: IPR024399 Some members in this family of proteins have been annotated as YigF. Their function is currently unknown.
Probab=20.30 E-value=3.1e+02 Score=22.36 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=15.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHh
Q 019217 237 SPEIAASFAAGLLGSLVYIRMLGS 260 (344)
Q Consensus 237 S~~~AlSyllGA~gGllYLrLLar 260 (344)
....+++...|..+-.+|.+-+.|
T Consensus 85 ~l~l~~~~~~g~~~n~~y~~~~~R 108 (108)
T PF10947_consen 85 GLSLAISLFFGMFANYWYYRHLKR 108 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455566666677777777766543
No 48
>PF10911 DUF2717: Protein of unknown function (DUF2717); InterPro: IPR020121 The proteins in this entry are uncharacterised.
Probab=20.06 E-value=5e+02 Score=21.54 Aligned_cols=55 Identities=20% Similarity=0.352 Sum_probs=35.1
Q ss_pred CCCChHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHHHHHH
Q 019217 197 PRGDPEVLAAQSKEQYFKSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYIRM 257 (344)
Q Consensus 197 ~~~dp~~~aa~~~eeYLKr~Lll~Tl~ig~vg~~~~~l~yS~~~AlSyllGA~gGllYLrL 257 (344)
|.+=|.+. ..-.+|||.++--.=+.-++.+...--..+|. +|++|++.|+-|-.=
T Consensus 12 p~DiP~ip--ra~aeyLqvrfN~~yl~~sG~i~~lr~~G~SE----~~I~Gfl~Gl~~As~ 66 (77)
T PF10911_consen 12 PDDIPDIP--RAAAEYLQVRFNAAYLMASGIISALRKQGWSE----SYILGFLAGLQYASE 66 (77)
T ss_pred CcccCCcc--HHHHHHHHHHhcHHHHHHhhhHHHHHHccccH----HHHHHHHHHHHHHHH
Confidence 34444443 25678999887766666665554443334444 689999999999843
Done!