Query 019217
Match_columns 344
No_of_seqs 106 out of 116
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 12:42:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019217.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019217hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4av3_A K(+)-stimulated pyropho 72.1 9.1 0.00031 40.8 8.0 52 207-259 53-106 (735)
2 3dl8_C SECE; RECA-type ATPase 37.4 25 0.00085 26.1 3.0 40 213-252 22-61 (65)
3 2wsc_1 AT3G54890, LHCA1; photo 27.5 18 0.0006 33.6 0.9 20 36-55 48-67 (241)
4 4ezc_A UREA transporter 1; mem 25.1 1.8E+02 0.0062 28.6 7.6 45 224-268 71-115 (384)
5 3din_D Preprotein translocase 22.2 20 0.00069 26.6 0.2 39 214-252 23-61 (65)
6 2zjs_E Preprotein translocase 20.8 11 0.00038 27.5 -1.5 35 215-249 25-59 (60)
7 3lto_A Mevalonate diphosphate 19.1 25 0.00087 33.3 0.2 16 58-73 8-23 (323)
8 2bhw_A Chlorophyll A-B binding 18.6 1E+02 0.0036 28.1 4.2 15 41-55 31-45 (232)
9 4a01_A Proton pyrophosphatase; 17.1 2.1E+02 0.0071 30.9 6.5 20 239-258 141-162 (766)
10 1jeg_B Hematopoietic cell prot 14.7 83 0.0029 20.2 1.7 20 17-37 3-22 (26)
No 1
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase, membrane pyrophosphotase, ION pump; 2.60A {Thermotoga maritima} PDB: 4av6_A
Probab=72.14 E-value=9.1 Score=40.83 Aligned_cols=52 Identities=12% Similarity=0.103 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHH--HHHHHH
Q 019217 207 QSKEQYFKSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLV--YIRMLG 259 (344)
Q Consensus 207 ~~~eeYLKr~Lll~Tl~ig~vg~~~~~l~yS~~~AlSyllGA~gGll--YLrLLa 259 (344)
+--+-||||+-... +.++.+.++..+++.+..++++|++|++.|.+ |+-|--
T Consensus 53 eGA~afL~rqyk~i-~~~~vv~~~ll~~~~~~~~ai~Fl~Ga~~S~~aGyiGM~v 106 (735)
T 4av3_A 53 SGADSFLAHETKAI-FKVAIVIAILLMIFTTWQTGVAFLLGAVMSASAGIVGMKM 106 (735)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556788875533 44555666667777899999999999998876 665543
No 2
>3dl8_C SECE; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=37.43 E-value=25 Score=26.12 Aligned_cols=40 Identities=10% Similarity=0.006 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHH
Q 019217 213 FKSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSL 252 (344)
Q Consensus 213 LKr~Lll~Tl~ig~vg~~~~~l~yS~~~AlSyllGA~gGl 252 (344)
=++++..+|+++-.+..+.+.+++..+..+++++..+-|+
T Consensus 22 tr~e~~~~T~vViv~v~i~~~~i~~vD~~~~~~~~~i~~~ 61 (65)
T 3dl8_C 22 SRELVVKATISVIIFSLAIGVYLWILDLTFTKIISFILSL 61 (65)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478888898888888888888888888888777655443
No 3
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=27.46 E-value=18 Score=33.62 Aligned_cols=20 Identities=30% Similarity=0.747 Sum_probs=6.4
Q ss_pred ccCCcCccccccCCCCCCCC
Q 019217 36 LLPKKKSMKWSTGVAPGEYG 55 (344)
Q Consensus 36 ~~p~~k~~~w~~g~~pg~yg 55 (344)
.+|--.+-.+-+|..||+||
T Consensus 48 w~P~~~~P~~L~G~~pgd~g 67 (241)
T 2wsc_1 48 WMPGEPRPAYLDGSAPGDFG 67 (241)
T ss_dssp -------------CTTSSCC
T ss_pred cCCCCCCcccccCCCCCcCC
Confidence 46765556788899999998
No 4
>4ezc_A UREA transporter 1; membrane protein, channel, SLC14, structural genomics, PSI-biology, NEW YORK consortium on membrane PROT structure, nycomps; HET: BGC BOG SPL; 2.36A {Bos taurus} PDB: 4ezd_A*
Probab=25.06 E-value=1.8e+02 Score=28.58 Aligned_cols=45 Identities=20% Similarity=0.262 Sum_probs=36.2
Q ss_pred HHHHHhhhhhhccCHHHHHHHHHHHHHHHHHHHHHHhhHhhhccc
Q 019217 224 IGGVGLVSAYISYSPEIAASFAAGLLGSLVYIRMLGSTVDSMAAG 268 (344)
Q Consensus 224 ig~vg~~~~~l~yS~~~AlSyllGA~gGllYLrLLarsVD~Lg~~ 268 (344)
++++++....++.++..|+..++|++.|.+--++|+-+-+.+..|
T Consensus 71 lsGlliLigl~i~sp~~al~allG~~vstltA~llg~~~~~I~~G 115 (384)
T 4ezc_A 71 ISGILILVGLLVQNPWCALNGCVGTVVSTLTALLLSQDRSAITAG 115 (384)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCCCHHHHHcc
Confidence 345555566667899999999999999999999999887777543
No 5
>3din_D Preprotein translocase subunit SECE; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=22.23 E-value=20 Score=26.63 Aligned_cols=39 Identities=8% Similarity=-0.153 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHH
Q 019217 214 KSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSL 252 (344)
Q Consensus 214 Kr~Lll~Tl~ig~vg~~~~~l~yS~~~AlSyllGA~gGl 252 (344)
++++..+|+++-.+..+.+.+++..+..+++++..+-|+
T Consensus 23 r~e~~~~T~vViv~~~i~~~~i~~vD~~~~~~~~~i~~~ 61 (65)
T 3din_D 23 RKELLTSFGVVLVILAVTSVYFFVLDFIFSGVVSAIFKA 61 (65)
T ss_dssp CCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 377888888888888888888888888888887665544
No 6
>2zjs_E Preprotein translocase SECE subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_E
Probab=20.78 E-value=11 Score=27.49 Aligned_cols=35 Identities=23% Similarity=0.010 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHH
Q 019217 215 SKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLL 249 (344)
Q Consensus 215 r~Lll~Tl~ig~vg~~~~~l~yS~~~AlSyllGA~ 249 (344)
+++..+|+++-++..+.+.+++..+..+++++..+
T Consensus 25 ~e~~~~t~vViv~v~i~~~~~~~vD~~~~~~~~~i 59 (60)
T 2zjs_E 25 EQVVEGTQAILLFTLAFMVILGLYDTVFRFLIGLL 59 (60)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56677787777777777777777887777766544
No 7
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila}
Probab=19.06 E-value=25 Score=33.35 Aligned_cols=16 Identities=31% Similarity=0.617 Sum_probs=14.1
Q ss_pred CCccccccccCCCCCC
Q 019217 58 PTTTKLRKFWGGEKED 73 (344)
Q Consensus 58 p~~~~~~~~~~~~~~d 73 (344)
|+++-+-|||||.|+.
T Consensus 8 ~~nialiKYwGk~d~~ 23 (323)
T 3lto_A 8 PANIALIKYMGKKDEN 23 (323)
T ss_dssp EEEEEEECCTTCBCTT
T ss_pred cchhHHhHhcCccccc
Confidence 6788899999999887
No 8
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=18.60 E-value=1e+02 Score=28.09 Aligned_cols=15 Identities=47% Similarity=0.873 Sum_probs=12.5
Q ss_pred CccccccCCCCCCCC
Q 019217 41 KSMKWSTGVAPGEYG 55 (344)
Q Consensus 41 k~~~w~~g~~pg~yg 55 (344)
.+-.+-+|.-||+||
T Consensus 31 ~~P~~LdG~~pGD~G 45 (232)
T 2bhw_A 31 ESPSYLTGEFPGDYG 45 (232)
T ss_dssp SCCTTCCSCSTTCCS
T ss_pred CCccccCCcCCCCCC
Confidence 445788999999998
No 9
>4a01_A Proton pyrophosphatase; hydrolase, membrane protein, proton pumping; HET: DMU; 2.35A {Vigna radiata}
Probab=17.14 E-value=2.1e+02 Score=30.90 Aligned_cols=20 Identities=35% Similarity=0.391 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHH--HHHHH
Q 019217 239 EIAASFAAGLLGSLV--YIRML 258 (344)
Q Consensus 239 ~~AlSyllGA~gGll--YLrLL 258 (344)
.++++|++|++.|.+ |+-|-
T Consensus 141 ~~a~~Fl~Ga~~S~~aG~iGM~ 162 (766)
T 4a01_A 141 FSTVSFLLGGVTSLVSGFLGMK 162 (766)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999998865 55554
No 10
>1jeg_B Hematopoietic cell protein-tyrosine phosphatase 70Z-PEP; SH3 domain, protein-peptide complex, kinase, transferase/hydrolase complex; NMR {Mus musculus}
Probab=14.68 E-value=83 Score=20.15 Aligned_cols=20 Identities=15% Similarity=0.446 Sum_probs=14.0
Q ss_pred CCCCCCCCCCCCCCCCccccc
Q 019217 17 SQDSSSTSSSVPTTRPTKILL 37 (344)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~ 37 (344)
.+|..+ +++.|++++.++||
T Consensus 3 ~~d~~~-Ppplp~rtpesfil 22 (26)
T 1jeg_B 3 RTDDEI-PPPLPERTPESFIV 22 (26)
T ss_pred ccccCC-CCCccccCcchhee
Confidence 445554 66778888888876
Done!