Query 019217
Match_columns 344
No_of_seqs 106 out of 116
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 12:42:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019217.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019217hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rwta_ f.43.1.1 (A:) Chloroph 29.7 6.4 0.00047 33.1 0.6 25 36-76 11-37 (218)
2 d1fi4a1 d.14.1.5 (A:3-190) Mev 19.8 10 0.00074 31.7 -0.1 16 58-73 9-24 (188)
3 d1xmka1 a.4.5.19 (A:294-366) Z 7.3 49 0.0036 23.9 0.3 46 128-173 23-69 (73)
4 d1e12a_ f.13.1.1 (A:) Halorhod 6.6 4.7E+02 0.034 21.2 6.5 47 213-259 6-59 (239)
5 d1v54j_ f.23.4.1 (J:) Mitochon 6.2 1.5E+02 0.011 20.4 2.4 19 215-233 29-47 (58)
6 d2gxba1 a.4.5.19 (A:140-198) Z 6.1 73 0.0053 22.2 0.7 39 129-167 21-59 (59)
7 d2r6gf1 e.70.1.1 (F:13-260) Ma 5.5 3.9E+02 0.029 22.3 5.4 37 298-334 44-80 (248)
8 d1l7va_ f.22.1.1 (A:) ABC tran 5.2 2.5E+02 0.018 24.2 3.9 21 241-262 277-297 (324)
9 d1u9la_ a.60.4.2 (A:) Transcri 4.9 59 0.0043 23.1 -0.5 30 116-145 37-66 (68)
10 d2co8a1 g.39.1.3 (A:44-76) Ned 4.9 78 0.0057 19.7 0.2 11 49-59 9-19 (33)
No 1
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=29.68 E-value=6.4 Score=33.13 Aligned_cols=25 Identities=36% Similarity=0.520 Sum_probs=20.1
Q ss_pred ccC--CcCccccccCCCCCCCCCCCCccccccccCCCCCCCCC
Q 019217 36 LLP--KKKSMKWSTGVAPGEYGGPPTTTKLRKFWGGEKEDPLT 76 (344)
Q Consensus 36 ~~p--~~k~~~w~~g~~pg~ygg~p~~~~~~~~~~~~~~dp~~ 76 (344)
.|| ..++-.|-.|.-||||| +||+.
T Consensus 11 ~~~~~~~~~P~~LdGs~pGD~G----------------FDPLg 37 (218)
T d1rwta_ 11 YLGPFSGESPSYLTGEFPGDYG----------------WDTAG 37 (218)
T ss_dssp TTGGGGCSCCTTCCSCSTTCCS----------------CCTTC
T ss_pred cCCccccCCCcccCCCCCCCCC----------------cCCcc
Confidence 455 44555899999999999 79999
No 2
>d1fi4a1 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=19.79 E-value=10 Score=31.68 Aligned_cols=16 Identities=25% Similarity=0.686 Sum_probs=13.6
Q ss_pred CCccccccccCCCCCC
Q 019217 58 PTTTKLRKFWGGEKED 73 (344)
Q Consensus 58 p~~~~~~~~~~~~~~d 73 (344)
|.++-+=|||||-+++
T Consensus 9 psNIALiKYWGK~d~~ 24 (188)
T d1fi4a1 9 PVNIATLKYWGKRDTK 24 (188)
T ss_dssp CCEEEEECCCCEEETT
T ss_pred cCcEEEEEeccccCcc
Confidence 7889999999997655
No 3
>d1xmka1 a.4.5.19 (A:294-366) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.33 E-value=49 Score=23.90 Aligned_cols=46 Identities=20% Similarity=0.424 Sum_probs=25.2
Q ss_pred ccchHhhhhhh-hhhcchhhHHhhhhccccCCCCCCcccCCcChHHH
Q 019217 128 VDLSKELTADS-KTALQQPVEAAIQDSQQKSGSVPRKWRLAPTRREQ 173 (344)
Q Consensus 128 vdls~el~~~~-~~~~~~q~~a~~~~~~~~~~~~~~~~~~apTr~E~ 173 (344)
.+|.|+|--++ |.+=.-=-.-..++.-...+..||.|.+..-++|.
T Consensus 23 l~iak~lGl~kakeVN~~LY~L~k~g~v~k~~~tPP~W~L~~~~~Er 69 (73)
T d1xmka1 23 LNLAKNIGLTKARDINAVLIDMERQGDVYRQGTTPPIWHLTDKKRER 69 (73)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHHTTSEEEECSSSCEEEECHHHHTT
T ss_pred HHHHHHhCCCcHHHHhHHHHHHHHCCCeecCCCCCCceeeecchhhh
Confidence 46778886554 33311111112222222235678999999888885
No 4
>d1e12a_ f.13.1.1 (A:) Halorhodopsin {Archaeon Halobacterium salinarum [TaxId: 2242]}
Probab=6.55 E-value=4.7e+02 Score=21.15 Aligned_cols=47 Identities=21% Similarity=0.176 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccC---H----HHHHHHHHHHHHHHHHHHHHH
Q 019217 213 FKSKLQFLTLGIGGVGLVSAYISYS---P----EIAASFAAGLLGSLVYIRMLG 259 (344)
Q Consensus 213 LKr~Lll~Tl~ig~vg~~~~~l~yS---~----~~AlSyllGA~gGllYLrLLa 259 (344)
+...|-..++++++..+.+.+...+ + -..++.++=+++++.|++|-.
T Consensus 6 v~~slW~~~a~m~~a~~~f~~~~~~~~~~~~R~~~~l~~~I~~IA~~~Y~~Ma~ 59 (239)
T d1e12a_ 6 LSSSLWVNVALAGIAILVFVYMGRTIRPGRPRLIWGATLMIPLVSISSYLGLLS 59 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhHHHHHHHHHHHHHHHHHHh
Confidence 4455655555555444434333332 2 235777888899999999844
No 5
>d1v54j_ f.23.4.1 (J:) Mitochondrial cytochrome c oxidase subunit VIIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.24 E-value=1.5e+02 Score=20.42 Aligned_cols=19 Identities=16% Similarity=0.060 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHhhhhh
Q 019217 215 SKLQFLTLGIGGVGLVSAY 233 (344)
Q Consensus 215 r~Lll~Tl~ig~vg~~~~~ 233 (344)
+-|...|.+++++|++++.
T Consensus 29 ~~LYr~Tm~L~~~G~~~s~ 47 (58)
T d1v54j_ 29 NILYRVTMTLCLGGTLYSL 47 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567788888888877664
No 6
>d2gxba1 a.4.5.19 (A:140-198) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.13 E-value=73 Score=22.24 Aligned_cols=39 Identities=28% Similarity=0.368 Sum_probs=19.6
Q ss_pred cchHhhhhhhhhhcchhhHHhhhhccccCCCCCCcccCC
Q 019217 129 DLSKELTADSKTALQQPVEAAIQDSQQKSGSVPRKWRLA 167 (344)
Q Consensus 129 dls~el~~~~~~~~~~q~~a~~~~~~~~~~~~~~~~~~a 167 (344)
||..+|.-|.|.+-.-=-.-...+.-...+..||-||++
T Consensus 21 ~LA~kl~vpKk~iNr~LYsL~~kgkl~k~~gtPPlWr~~ 59 (59)
T d2gxba1 21 DLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWKIA 59 (59)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHTTSEEEECSSSCEEEEC
T ss_pred HHHHHhCCcHHHHHHHHHHHHHccchhhcCCCCCCcccC
Confidence 566677666665511111122222222346668889864
No 7
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=5.53 E-value=3.9e+02 Score=22.26 Aligned_cols=37 Identities=11% Similarity=0.151 Sum_probs=26.2
Q ss_pred cccCCccccchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019217 298 ITVPEYGFLHLELIPMLVGFFTYKIATFFQAVEEAVS 334 (344)
Q Consensus 298 i~~p~f~~~~LeLlP~llGFLTYK~AlLvqa~rdv~~ 334 (344)
++...-.....-++|++++++++-+--+++.+.-.++
T Consensus 44 vy~s~r~~p~kyi~PG~~~l~~Fvi~Pi~yT~~iaFT 80 (248)
T d2r6gf1 44 IFANRKAYAWRYVYPGMAGMGLFVLFPLVCTIAIAFT 80 (248)
T ss_dssp HHSSSCCTTHHHHHHHHHHHHHHTHHHHHHHHHGGGB
T ss_pred EEEccCccceehhhhHHHHHHHHHHHhheeEEEEEEE
Confidence 3333334445789999999999988888887765554
No 8
>d1l7va_ f.22.1.1 (A:) ABC transporter involved in vitamin B12 uptake, BtuC {Escherichia coli [TaxId: 562]}
Probab=5.19 E-value=2.5e+02 Score=24.20 Aligned_cols=21 Identities=14% Similarity=0.188 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhH
Q 019217 241 AASFAAGLLGSLVYIRMLGSTV 262 (344)
Q Consensus 241 AlSyllGA~gGllYLrLLarsV 262 (344)
-.|.++|++- ++.-..++|.+
T Consensus 277 p~s~l~Ga~l-ll~aD~l~r~i 297 (324)
T d1l7va_ 277 PGCALAGASA-LLLADIVARLA 297 (324)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHS
T ss_pred HHHHHHHHHH-HHHHHHHHHhh
Confidence 3455555543 33334444443
No 9
>d1u9la_ a.60.4.2 (A:) Transcription elongation protein NusA {Escherichia coli [TaxId: 562]}
Probab=4.94 E-value=59 Score=23.15 Aligned_cols=30 Identities=17% Similarity=0.335 Sum_probs=24.0
Q ss_pred eeecccccccccccchHhhhhhhhhhcchh
Q 019217 116 SLNRVMSLDSLEVDLSKELTADSKTALQQP 145 (344)
Q Consensus 116 sl~R~~~lds~dvdls~el~~~~~~~~~~q 145 (344)
+.+-.++++.+|-|+.+||+.+.+..+.++
T Consensus 37 ~~~eL~~IegfDee~a~eL~~RA~~~L~~~ 66 (68)
T d1u9la_ 37 PMKELLEIEGLDEPTVEALRERAKNALATI 66 (68)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 345667899999999999998888776554
No 10
>d2co8a1 g.39.1.3 (A:44-76) Nedd9 interacting protein with calponin homology, NICAL (MICAL1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.88 E-value=78 Score=19.73 Aligned_cols=11 Identities=36% Similarity=0.697 Sum_probs=8.5
Q ss_pred CCCCCCCCCCC
Q 019217 49 VAPGEYGGPPT 59 (344)
Q Consensus 49 ~~pg~ygg~p~ 59 (344)
.-||.||+-|-
T Consensus 9 L~pG~Y~qhp~ 19 (33)
T d2co8a1 9 LWPGGYEQHPG 19 (33)
T ss_dssp CCTTSEECCTT
T ss_pred EccCcccCCCC
Confidence 46899998774
Done!