BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019218
(344 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F0N|A Chain A, Mus Musculus Mevalonate Pyrophosphate Decarboxylase
pdb|3F0N|B Chain B, Mus Musculus Mevalonate Pyrophosphate Decarboxylase
Length = 414
Score = 313 bits (802), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 161/304 (52%), Positives = 201/304 (66%), Gaps = 5/304 (1%)
Query: 8 LMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWL 67
LMVT P NIAVIKYWGKRDE LILP+N S+SVTL D L TTTTVA+S F +DR+WL
Sbjct: 22 LMVTCTAPVNIAVIKYWGKRDEALILPINSSLSVTLHQDQLKTTTTVAISKDFTEDRIWL 81
Query: 68 NGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTXXXXX 127
NG+E +G R Q CL+EIR A TE G + K+H +AS NNFPT
Sbjct: 82 NGREEDVGQPRLQACLREIRRLARKRRSTEDGDTLPLSLSYKVH--VASVNNFPTAAGLA 139
Query: 128 XXXXXXXCLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSL 187
CL ++LA++ + + LS +AR+GSGSACRSL+GGFV+W +G++ +G DS+
Sbjct: 140 SSAAGYACLAYTLAQVYGV---EGDLSEVARRGSGSACRSLYGGFVEWQMGEQADGKDSI 196
Query: 188 AVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEE 247
A Q+ E HW L I+I VVS+ +K+T ST GM+ SVETS LL+ RA+ VVP+R+ +M
Sbjct: 197 ARQIAPEWHWPQLRILILVVSADKKQTGSTVGMQTSVETSTLLKFRAESVVPERMKEMTR 256
Query: 248 AIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCS 307
IQ DF FAQLT DSNQFHA CLDT PPI Y+NDTS RII V R+N G +V
Sbjct: 257 CIQEQDFQGFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNTHHGQTKVAY 316
Query: 308 FFAA 311
F A
Sbjct: 317 TFDA 320
>pdb|3D4J|A Chain A, Crystal Structure Of Human Mevalonate Diphosphate
Decarboxylase
pdb|3D4J|B Chain B, Crystal Structure Of Human Mevalonate Diphosphate
Decarboxylase
Length = 400
Score = 304 bits (779), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 156/311 (50%), Positives = 201/311 (64%), Gaps = 5/311 (1%)
Query: 1 MAAEKWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSF 60
MA+EK + VT P NIAVIKYWGKRDE L+LP+N S+SVTL D L TTTT +S F
Sbjct: 1 MASEKPLAAVTCTAPVNIAVIKYWGKRDEELVLPINSSLSVTLHQDQLKTTTTAVISKDF 60
Query: 61 DQDRMWLNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNF 120
+DR+WLNG+E +G R Q CL+EIR A ++ G + +H+AS NNF
Sbjct: 61 TEDRIWLNGREEDVGQPRLQACLREIRCLARKRRNSRDGDPLPSS--LSCKVHVASVNNF 118
Query: 121 PTXXXXXXXXXXXXCLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKE 180
PT CL ++LA++ + +S LS +AR+GSGSACRSL+GGFV+W +G++
Sbjct: 119 PTAAGLASSAAGYACLAYTLARVYGV---ESDLSEVARRGSGSACRSLYGGFVEWQMGEQ 175
Query: 181 GNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPK 240
+G DS+A Q+ E HW +L ++I VVS+ +K T ST GMR SVETS LL+ RA+ VVP
Sbjct: 176 ADGKDSIARQVAPESHWPELRVLILVVSAEKKLTGSTVGMRASVETSPLLRFRAESVVPA 235
Query: 241 RIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSV 300
R+ +M I+ DF SFAQLT DSNQFHA CLDT PPI Y+N S RII V R+N
Sbjct: 236 RMAEMARCIRERDFPSFAQLTMKDSNQFHATCLDTFPPISYLNAISWRIIHLVHRFNAHH 295
Query: 301 GSPQVCSFFAA 311
G +V F A
Sbjct: 296 GDTKVAYTFDA 306
>pdb|1FI4|A Chain A, The X-Ray Crystal Structure Of Mevalonate 5-Diphosphate
Decarboxylase At 2.3 Angstrom Resolution
Length = 416
Score = 258 bits (660), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 139/305 (45%), Positives = 180/305 (59%), Gaps = 4/305 (1%)
Query: 7 VLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMW 66
V + P NIA +KYWGKRD L LP N SISVTL D L T T+ A +P F++D +W
Sbjct: 23 VYTASVTAPVNIATLKYWGKRDTKLNLPTNSSISVTLSQDDLRTLTSAATAPEFERDTLW 82
Query: 67 LNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTXXXX 126
LNG+ S+ R QNCL+++R + E + + + W+ LHI S NNFPT
Sbjct: 83 LNGEPHSIDNERTQNCLRDLRQLRKEXESKDASLPTLSQ-WK---LHIVSENNFPTAAGL 138
Query: 127 XXXXXXXXCLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDS 186
LV ++AKL L ++ S++S IAR+GSGSACRSLFGG+V W GK +G DS
Sbjct: 139 ASSAAGFAALVSAIAKLYQLPQSTSEISRIARKGSGSACRSLFGGYVAWEXGKAEDGHDS 198
Query: 187 LAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQME 246
AVQ+ D W + VVS +K+ SST G + +V TS L + R + VVPKR
Sbjct: 199 XAVQIADSSDWPQXKACVLVVSDIKKDVSSTQGXQLTVATSELFKERIEHVVPKRFEVXR 258
Query: 247 EAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVC 306
+AI DF++FA+ T DSN FHA CLD+ PPIFY NDTS RIIS+ N+ G V
Sbjct: 259 KAIVEKDFATFAKETXXDSNSFHATCLDSFPPIFYXNDTSKRIISWCHTINQFYGETIVA 318
Query: 307 SFFAA 311
F A
Sbjct: 319 YTFDA 323
>pdb|2HKE|A Chain A, Mevalonate Diphosphate Decarboxylase From Trypanosoma
Brucei
pdb|2HKE|B Chain B, Mevalonate Diphosphate Decarboxylase From Trypanosoma
Brucei
Length = 380
Score = 200 bits (508), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 117/313 (37%), Positives = 171/313 (54%), Gaps = 20/313 (6%)
Query: 10 VTAQTPTNIAVIKYWGKRD--ETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWL 67
VT + P NIA IKYWGKR+ ETLILP NDS S+TL + T+V + + D + L
Sbjct: 6 VTVEAPINIAFIKYWGKREGGETLILPTNDSFSITLSASPFRSKTSVELRDDIETDTLRL 65
Query: 68 NGKEISLGG-GRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTXXXX 126
NG E+ +G R Q+ L +RS C E K + +I S NNFPT
Sbjct: 66 NGTEVDVGKTPRVQSMLLHLRS-TCPEELKNKKV------------NIVSENNFPTAAGM 112
Query: 127 XXXXXXXXCLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDS 186
+ A L+ ++ + +S +AR GSGSACRS FGGFV W G++ +GSD
Sbjct: 113 ASSASGYCAMS---AALIRAFKSTTNVSMLARLGSGSACRSAFGGFVIWNKGEKPDGSDC 169
Query: 187 LAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQME 246
+A Q VDE HW ++ ++ AV+ QK+ SST GM++S++TS L++ R E VP+R+
Sbjct: 170 VATQFVDETHWPEIQVMCAVLKGAQKDVSSTKGMQQSLKTSPLMKKRISETVPERMKIAS 229
Query: 247 EAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVC 306
AI+ DF++FA++ +S+ +C T P I Y + S+ +I V+ +N G +
Sbjct: 230 RAIKARDFATFAEIAMLESDDLQEICATTEPKITYATEDSYAMIRLVKAYNAKKGRTALA 289
Query: 307 SFFAALSGRCYEF 319
F A C+ F
Sbjct: 290 YTFDA-GANCFLF 301
>pdb|4DPW|A Chain A, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Mevalonate Diphosphate And Atpgs
pdb|4DPW|B Chain B, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Mevalonate Diphosphate And Atpgs
pdb|4DPW|C Chain C, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Mevalonate Diphosphate And Atpgs
pdb|4DPW|D Chain D, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Mevalonate Diphosphate And Atpgs
pdb|4DPW|E Chain E, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Mevalonate Diphosphate And Atpgs
pdb|4DPW|F Chain F, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Mevalonate Diphosphate And Atpgs
pdb|4DPW|G Chain G, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Mevalonate Diphosphate And Atpgs
pdb|4DPW|H Chain H, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Mevalonate Diphosphate And Atpgs
pdb|4DU8|A Chain A, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Inhibitor Dpgp
pdb|4DU8|B Chain B, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Inhibitor Dpgp
Length = 332
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/286 (32%), Positives = 148/286 (51%), Gaps = 24/286 (8%)
Query: 12 AQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE 71
A+ TNIA+IKYWGK DET I+P+N+S+SVTL D T T V P F +D + LNG E
Sbjct: 12 ARAHTNIALIKYWGKADETYIIPMNNSLSVTL--DRFYTETKVTFDPDFTEDCLILNGNE 69
Query: 72 ISLG-GGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTXXXXXXXX 130
++ + QN + +R A + +LH I S N PT
Sbjct: 70 VNAKEKEKIQNYMNIVRDLAGN----------------RLHARIESENYVPTAAGLASSA 113
Query: 131 XXXXCLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQ 190
L + + ++L + + LS +AR+GSGSA RS+FGGF +W ++G+ +
Sbjct: 114 SAYAALAAACNEALSLNLSDTDLSRLARRGSGSASRSIFGGFAEW---EKGHDDLTSYAH 170
Query: 191 LVDEEHW-NDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAI 249
++ W DL +I V++++ K+ SS +GM + +TS Q+ V + + + +EA+
Sbjct: 171 GINSNGWEKDLSMIFVVINNQSKKVSSRSGMSLTRDTSRFYQYWLDH-VDEDLNEAKEAV 229
Query: 250 QNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVER 295
+N DF ++ A+ + HA L PP Y+ S+ ++ VE+
Sbjct: 230 KNQDFQRLGEVIEANGLRMHATNLGAQPPFTYLVQESYDAMAIVEQ 275
>pdb|3QT5|A Chain A, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase
pdb|3QT5|B Chain B, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase
pdb|3QT6|A Chain A, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Inhibitor Dpgp
pdb|3QT6|B Chain B, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Inhibitor Dpgp
pdb|3QT7|A Chain A, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Inhibitor
6-Fmvapp
pdb|3QT7|B Chain B, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Inhibitor
6-Fmvapp
pdb|4DPT|A Chain A, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Inhibitor
6-Fmvapp And Atpgs
pdb|4DPT|B Chain B, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Inhibitor
6-Fmvapp And Atpgs
pdb|4DU7|A Chain A, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Substrate
Mevalonate Diphosphate
pdb|4DU7|B Chain B, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Substrate
Mevalonate Diphosphate
Length = 332
Score = 139 bits (350), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 92/286 (32%), Positives = 148/286 (51%), Gaps = 24/286 (8%)
Query: 12 AQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE 71
A+ TNIA+IKYWGK DET I+P+N+S+SVTL D T T V P F +D + LNG E
Sbjct: 12 ARAHTNIALIKYWGKADETYIIPMNNSLSVTL--DRFYTETKVTFDPDFTEDCLILNGNE 69
Query: 72 ISLG-GGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTXXXXXXXX 130
++ + QN + +R A + +LH I S N PT
Sbjct: 70 VNAKEKEKIQNYMNIVRDLAGN----------------RLHARIESENYVPTAAGLASSA 113
Query: 131 XXXXCLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQ 190
L + + ++L + + LS +AR+GSGSA RS+FGGF +W ++G+ +
Sbjct: 114 SAYAALAAACNEALSLNLSDTDLSRLARRGSGSASRSIFGGFAEW---EKGHDDLTSYAH 170
Query: 191 LVDEEHW-NDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAI 249
++ W DL +I V++++ K+ SS +GM + +TS Q+ V + + + +EA+
Sbjct: 171 GINSNGWEKDLSMIFVVINNQSKKVSSRSGMSLTRDTSRFYQYWLDH-VDEDLNEAKEAV 229
Query: 250 QNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVER 295
+N DF ++ A+ + HA L PP Y+ S+ ++ VE+
Sbjct: 230 KNQDFQRLGEVIEANGLRMHATNLGAQPPFTYLVQESYDAMAIVEQ 275
>pdb|3QT8|A Chain A, Crystal Structure Of Mutant S192a Staphylococcus
Epidermidis Mevalonate Diphosphate Decarboxylase
Complexed With Inhibitor 6- Fmvapp
pdb|3QT8|B Chain B, Crystal Structure Of Mutant S192a Staphylococcus
Epidermidis Mevalonate Diphosphate Decarboxylase
Complexed With Inhibitor 6- Fmvapp
pdb|4DPU|A Chain A, Crystal Structure Of Staphylococcus Epidermidis S192a
Mevalonate Diphosphate Decarboxylase Complexed With
Inhibitor 6-Fmvapp And Atpgs
pdb|4DPU|B Chain B, Crystal Structure Of Staphylococcus Epidermidis S192a
Mevalonate Diphosphate Decarboxylase Complexed With
Inhibitor 6-Fmvapp And Atpgs
pdb|4DPX|A Chain A, Crystal Structure Of S192a Staphylococcus Epidermidis
Mevalonate Diphosphate Decarboxylase
pdb|4DPX|B Chain B, Crystal Structure Of S192a Staphylococcus Epidermidis
Mevalonate Diphosphate Decarboxylase
pdb|4DPY|A Chain A, Crystal Structure Of Staphylococcus Epidermidis S192a
Mevalonate Diphosphate Decarboxylase Complexed With
Inhibitor Dpgp
pdb|4DPY|B Chain B, Crystal Structure Of Staphylococcus Epidermidis S192a
Mevalonate Diphosphate Decarboxylase Complexed With
Inhibitor Dpgp
Length = 332
Score = 138 bits (347), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 91/286 (31%), Positives = 148/286 (51%), Gaps = 24/286 (8%)
Query: 12 AQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE 71
A+ TNIA+IKYWGK DET I+P+N+S+SVTL D T T V P F +D + LNG E
Sbjct: 12 ARAHTNIALIKYWGKADETYIIPMNNSLSVTL--DRFYTETKVTFDPDFTEDCLILNGNE 69
Query: 72 ISLG-GGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTXXXXXXXX 130
++ + QN + +R A + +LH I S N PT
Sbjct: 70 VNAKEKEKIQNYMNIVRDLAGN----------------RLHARIESENYVPTAAGLASSA 113
Query: 131 XXXXCLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQ 190
L + + ++L + + LS +AR+GSGSA RS+FGGF +W ++G+ +
Sbjct: 114 SAYAALAAACNEALSLNLSDTDLSRLARRGSGSASRSIFGGFAEW---EKGHDDLTSYAH 170
Query: 191 LVDEEHW-NDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAI 249
++ W DL +I V++++ K+ S+ +GM + +TS Q+ V + + + +EA+
Sbjct: 171 GINSNGWEKDLSMIFVVINNQSKKVSARSGMSLTRDTSRFYQYWLDH-VDEDLNEAKEAV 229
Query: 250 QNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVER 295
+N DF ++ A+ + HA L PP Y+ S+ ++ VE+
Sbjct: 230 KNQDFQRLGEVIEANGLRMHATNLGAQPPFTYLVQESYDAMAIVEQ 275
>pdb|2HK2|A Chain A, Crystal Structure Of Mevalonate Diphosphate Decarboxylase
From Staphylococcus Aureus (Monoclinic Form)
pdb|2HK2|B Chain B, Crystal Structure Of Mevalonate Diphosphate Decarboxylase
From Staphylococcus Aureus (Monoclinic Form)
pdb|2HK3|A Chain A, Crystal Structure Of Mevalonate Diphosphate Decarboxylase
From Staphylococcus Aureus (Orthorhombic Form)
pdb|2HK3|B Chain B, Crystal Structure Of Mevalonate Diphosphate Decarboxylase
From Staphylococcus Aureus (Orthorhombic Form)
Length = 331
Score = 134 bits (338), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 97/297 (32%), Positives = 151/297 (50%), Gaps = 23/297 (7%)
Query: 12 AQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE 71
A+ TNIA+IKYWGK+DE LI+P+N+SISVTL+ T T V + QD+ WLNG++
Sbjct: 11 ARAHTNIALIKYWGKKDEALIIPMNNSISVTLEK--FYTETKVTFNDQLTQDQFWLNGEK 68
Query: 72 ISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTXXXXXXXXX 131
+S G+ L++I S+ D+ GI DW + I S N PT
Sbjct: 69 VS---GK---ELEKI-SKYMDIVRNRAGI-----DW---YAEIESDNFVPTAAGLASSAS 113
Query: 132 XXXCLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQL 191
L + + ++++ + LS +AR GSGSA RS++GGF +W G + S AV L
Sbjct: 114 AYAALAAACNQALDMQLSDKDLSRLARIGSGSASRSIYGGFAEWEKGY--SDETSYAVPL 171
Query: 192 VDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQN 251
+DL +I V++ K+ S GM + TS Q+ + + + + + AIQ+
Sbjct: 172 ESNHFEDDLAMIFVVINQHSKKVPSRYGMSLTRNTSRFYQYWLDH-IDEDLAEAKAAIQD 230
Query: 252 HDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSF 308
DF ++ + + HA L ++PP Y+ S+ +++ V R G P C F
Sbjct: 231 KDFKRLGEVIEENGLRMHATNLGSTPPFTYLVQESYDVMALVHEC-REAGYP--CYF 284
>pdb|3LTO|A Chain A, Crystal Structure Of A Mevalonate Diphosphate
Decarboxylase From Legionella Pneumophila
pdb|3LTO|B Chain B, Crystal Structure Of A Mevalonate Diphosphate
Decarboxylase From Legionella Pneumophila
Length = 323
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 82/303 (27%), Positives = 134/303 (44%), Gaps = 36/303 (11%)
Query: 12 AQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE 71
AQ P NIA+IKY GK+DE LP N S+S TL +L ++ + P+ + +W +
Sbjct: 5 AQAPANIALIKYXGKKDENSNLPDNSSLSYTL--SNLLSSVKLEKLPT--KKDIW---EP 57
Query: 72 ISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFP----TXXXXX 127
+++ G N E + R D +++++ I S NNFP
Sbjct: 58 LTIPGAPEFNLSVEAQKRFID-----HLVRLKEYFGYVGGFLIQSSNNFPHSSGLASSAS 112
Query: 128 XXXXXXXCLVFSLAKLMNLK----ENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNG 183
C +L++L + Q+QLS R GSGS+CRS + + W G
Sbjct: 113 SFAALTKCASIALSELTQKPLPSIDEQAQLS---RLGSGSSCRSFYAPWALW------TG 163
Query: 184 SDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIV 243
A+ L + DL+ + V+SS++KE S + V+TS + R+ E +
Sbjct: 164 DKVSAIDLP----YKDLLHQVIVISSQEKEIPSRVAHK-LVKTSPFYETRS-ERAEANLK 217
Query: 244 QMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVER-WNRSVGS 302
+ A +N D++S Q+ + H + P Y+ D + I+S +E+ WN
Sbjct: 218 LLLNAFENKDWTSIYQICWHEFLDXHQLFKTCEKPFSYITDNTLHILSVIEKFWNEKGDG 277
Query: 303 PQV 305
P V
Sbjct: 278 PVV 280
>pdb|2GS8|A Chain A, Structure Of Mevalonate Pyrophosphate Decarboxylase From
Streptococcus Pyogenes
Length = 317
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/291 (25%), Positives = 126/291 (43%), Gaps = 36/291 (12%)
Query: 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSP-SFDQDRMWL 67
++T + NIA+IKYWGK ++ +P SIS+TL ++ TTT+V+ P + D+ ++
Sbjct: 8 VITVTSYANIAIIKYWGKENQAKXIPSTSSISLTL--ENXFTTTSVSFLPDTATSDQFYI 65
Query: 68 NGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTXXXXX 127
N G QN + + A + + G K + Q NN PT
Sbjct: 66 N--------GILQNDEEHTKISAIIDQFRQPGQAFVKXETQ---------NNXPTAAGLS 108
Query: 128 XXXXXXXCLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSL 187
LV + +L + + +Q L+ A+ SGS+ RS FG W DS
Sbjct: 109 SSSSGLSALVKACDQLFDTQLDQKALAQKAKFASGSSSRSFFGPVAAW-------DKDSG 161
Query: 188 AVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEE 247
A+ V+ + I V+++ +K SS G + +TS + V + + +
Sbjct: 162 AIYKVETDL--KXAXIXLVLNAAKKPISSREGXKLCRDTSTTFD----QWVEQSAIDYQH 215
Query: 248 A---IQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVER 295
++ ++F QLT A++ HA +PP Y+ S++ V+
Sbjct: 216 XLTYLKTNNFEKVGQLTEANALAXHATTKTANPPFSYLTKESYQAXEAVKE 266
>pdb|2B3S|A Chain A, Structure Of The Dsba Mutant (P31g-C33a)
pdb|2B3S|B Chain B, Structure Of The Dsba Mutant (P31g-C33a)
Length = 189
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 301 GSPQVCSFFAALSGRCYEFCDLKHI 325
G+PQV FF+ G Y+F ++ HI
Sbjct: 18 GAPQVLEFFSFFCGHAYQFEEVLHI 42
>pdb|1DSB|A Chain A, Crystal Structure Of The Dsba Protein Required For
Disulphide Bond Formation In Vivo
pdb|1DSB|B Chain B, Crystal Structure Of The Dsba Protein Required For
Disulphide Bond Formation In Vivo
pdb|1FVK|A Chain A, The 1.7 Angstrom Structure Of Wild Type Disulfide Bond
Formation Protein (Dsba)
pdb|1FVK|B Chain B, The 1.7 Angstrom Structure Of Wild Type Disulfide Bond
Formation Protein (Dsba)
pdb|1A2L|A Chain A, Reduced Dsba At 2.7 Angstroms Resolution
pdb|1A2L|B Chain B, Reduced Dsba At 2.7 Angstroms Resolution
pdb|1A2M|A Chain A, Oxidized Dsba At 2.7 Angstroms Resolution, Crystal Form
Iii
pdb|1A2M|B Chain B, Oxidized Dsba At 2.7 Angstroms Resolution, Crystal Form
Iii
pdb|1A23|A Chain A, Solution Nmr Structure Of Reduced Dsba From Escherichia
Coli, Minimized Average Structure
pdb|1A24|A Chain A, Solution Nmr Structure Of Reduced Dsba From Escherichia
Coli, Family Of 20 Structures
pdb|1A2J|A Chain A, Oxidized Dsba Crystal Form Ii
Length = 189
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 301 GSPQVCSFFAALSGRCYEFCDLKHI 325
G+PQV FF+ CY+F ++ HI
Sbjct: 18 GAPQVLEFFSFFCPHCYQFEEVLHI 42
>pdb|3DKS|A Chain A, Dsba Substrate Complex
pdb|3DKS|B Chain B, Dsba Substrate Complex
pdb|3DKS|C Chain C, Dsba Substrate Complex
pdb|3DKS|D Chain D, Dsba Substrate Complex
Length = 189
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 301 GSPQVCSFFAALSGRCYEFCDLKHI 325
G+PQV FF+ CY+F ++ HI
Sbjct: 18 GAPQVLEFFSFFCPHCYQFEEVLHI 42
>pdb|1BQ7|A Chain A, Dsba Mutant P151a, Role Of The Cis-Proline In The Active
Site Of Dsba
pdb|1BQ7|B Chain B, Dsba Mutant P151a, Role Of The Cis-Proline In The Active
Site Of Dsba
pdb|1BQ7|C Chain C, Dsba Mutant P151a, Role Of The Cis-Proline In The Active
Site Of Dsba
pdb|1BQ7|D Chain D, Dsba Mutant P151a, Role Of The Cis-Proline In The Active
Site Of Dsba
pdb|1BQ7|E Chain E, Dsba Mutant P151a, Role Of The Cis-Proline In The Active
Site Of Dsba
pdb|1BQ7|F Chain F, Dsba Mutant P151a, Role Of The Cis-Proline In The Active
Site Of Dsba
Length = 189
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 301 GSPQVCSFFAALSGRCYEFCDLKHI 325
G+PQV FF+ CY+F ++ HI
Sbjct: 18 GAPQVLEFFSFFCPHCYQFEEVLHI 42
>pdb|1UN2|A Chain A, Crystal Structure Of Circularly Permuted Cpdsba_q100t99
Preserved Global Fold And Local Structural Adjustments
Length = 197
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 301 GSPQVCSFFAALSGRCYEFCDLKHI 325
G+PQV FF+ CY+F ++ HI
Sbjct: 113 GAPQVLEFFSFFCPHCYQFEEVLHI 137
>pdb|1ACV|A Chain A, Dsba Mutant H32s
pdb|1ACV|B Chain B, Dsba Mutant H32s
Length = 189
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 301 GSPQVCSFFAALSGRCYEFCDLKHI 325
G+PQV FF+ CY+F ++ HI
Sbjct: 18 GAPQVLEFFSFFCPSCYQFEEVLHI 42
>pdb|1FVJ|A Chain A, The 2.06 Angstrom Structure Of The H32y Mutant Of The
Disulfide Bond Formation Protein (Dsba)
pdb|1FVJ|B Chain B, The 2.06 Angstrom Structure Of The H32y Mutant Of The
Disulfide Bond Formation Protein (Dsba)
Length = 189
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 301 GSPQVCSFFAALSGRCYEFCDLKHI 325
G+PQV FF+ CY+F ++ HI
Sbjct: 18 GAPQVLEFFSFFCPYCYQFEEVLHI 42
>pdb|1AC1|A Chain A, Dsba Mutant H32l
pdb|1AC1|B Chain B, Dsba Mutant H32l
Length = 189
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 301 GSPQVCSFFAALSGRCYEFCDLKHI 325
G+PQV FF+ CY+F ++ HI
Sbjct: 18 GAPQVLEFFSFFCPLCYQFEEVLHI 42
>pdb|3L9S|A Chain A, Crystal Structure Of Salmonella Enterica Serovar
Typhimurium Dsba
Length = 191
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 301 GSPQVCSFFAALSGRCYEFCDLKHI 325
G PQV FF+ CY+F ++ H+
Sbjct: 21 GEPQVLEFFSFYCPHCYQFEEVLHV 45
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.132 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,403,691
Number of Sequences: 62578
Number of extensions: 352871
Number of successful extensions: 656
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 611
Number of HSP's gapped (non-prelim): 20
length of query: 344
length of database: 14,973,337
effective HSP length: 100
effective length of query: 244
effective length of database: 8,715,537
effective search space: 2126591028
effective search space used: 2126591028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)