BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019218
(344 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q99JF5|MVD1_MOUSE Diphosphomevalonate decarboxylase OS=Mus musculus GN=Mvd PE=1 SV=2
Length = 401
Score = 320 bits (820), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 176/312 (56%), Positives = 218/312 (69%), Gaps = 6/312 (1%)
Query: 1 MAAEK-WVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPS 59
MA+EK LMVT P NIAVIKYWGKRDE LILP+N S+SVTL D L TTTTVA+S
Sbjct: 1 MASEKPQDLMVTCTAPVNIAVIKYWGKRDEALILPINSSLSVTLHQDQLKTTTTVAISKD 60
Query: 60 FDQDRMWLNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNN 119
F +DR+WLNG+E +G R Q CL+EIR A TE G + K+H +AS NN
Sbjct: 61 FTEDRIWLNGREEDVGQPRLQACLREIRRLARKRRSTEDGDTLPLSLSYKVH--VASVNN 118
Query: 120 FPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGK 179
FPTAAGLASSAAG+ACL ++LA++ + + LS +AR+GSGSACRSL+GGFV+W +G+
Sbjct: 119 FPTAAGLASSAAGYACLAYTLAQVYGV---EGDLSEVARRGSGSACRSLYGGFVEWQMGE 175
Query: 180 EGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVP 239
+ +G DS+A Q+ E HW L I+I VVS+ +K+T ST GM+ SVETS LL+ RA+ VVP
Sbjct: 176 QADGKDSIARQIAPEWHWPQLRILILVVSADKKQTGSTVGMQTSVETSTLLKFRAESVVP 235
Query: 240 KRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRS 299
+R+ +M IQ DF FAQLT DSNQFHA CLDT PPI Y+NDTS RII V R+N
Sbjct: 236 ERMKEMTRCIQEQDFQGFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNTH 295
Query: 300 VGSPQVCSFFAA 311
G +V F A
Sbjct: 296 QGQTKVAYTFDA 307
>sp|Q62967|MVD1_RAT Diphosphomevalonate decarboxylase OS=Rattus norvegicus GN=Mvd PE=2
SV=1
Length = 401
Score = 312 bits (800), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 171/312 (54%), Positives = 215/312 (68%), Gaps = 6/312 (1%)
Query: 1 MAAEK-WVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPS 59
MA+EK LMVT P NIAVIKYWGKRDE LILP+N S+SVTL D L TTTT A+S
Sbjct: 1 MASEKPQDLMVTCTAPVNIAVIKYWGKRDEALILPINPSLSVTLHQDQLKTTTTAAISKD 60
Query: 60 FDQDRMWLNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNN 119
F +DR+WLNG+E +G R Q CL+EIR A T G + K+H +AS NN
Sbjct: 61 FTEDRIWLNGREEDVGQPRLQACLREIRRLARKRRSTGDGDALPLSLGYKVH--VASVNN 118
Query: 120 FPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGK 179
FPTAAGLASSAAG+ACL ++LA++ + + LS +AR+GSGSACRSL+GGFV+W +G+
Sbjct: 119 FPTAAGLASSAAGYACLAYTLARVYGV---EGDLSEVARRGSGSACRSLYGGFVEWQMGE 175
Query: 180 EGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVP 239
+ +G DS+A Q+ E HW L ++I VVS+ +K T ST GM+ SV TS LL+ RA+ +VP
Sbjct: 176 QADGKDSIARQIAPEWHWPQLRVLILVVSAEKKPTGSTVGMQTSVATSTLLKFRAESIVP 235
Query: 240 KRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRS 299
+R+ +M IQ DF +FAQLT DSNQFHA CLDT PPI Y+NDTS RII V R+N
Sbjct: 236 ERMKEMTRCIQEQDFQAFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNAH 295
Query: 300 VGSPQVCSFFAA 311
G +V F A
Sbjct: 296 HGQTKVAYTFDA 307
>sp|Q5U403|MVD1_DANRE Diphosphomevalonate decarboxylase OS=Danio rerio GN=mvd PE=2 SV=1
Length = 400
Score = 311 bits (797), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 170/304 (55%), Positives = 216/304 (71%), Gaps = 10/304 (3%)
Query: 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLN 68
MVT P NIAVIKYWGKRDE LILPVN S+SVTL DHL TTTT+A S SF +D +WLN
Sbjct: 11 MVTCTAPVNIAVIKYWGKRDEDLILPVNASLSVTLHQDHLRTTTTIACSRSFHKDCIWLN 70
Query: 69 GKEISLGGGRYQNCLKEIRSRACDVEDT-EKGIKIEKKDWQKLHLHIASFNNFPTAAGLA 127
GKE + R Q+CL EIR A ++T + + K +HI S NNFPTAAGLA
Sbjct: 71 GKEQDISHPRLQSCLLEIRRLAQRRKNTGDPASDVSNK------VHICSVNNFPTAAGLA 124
Query: 128 SSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSL 187
SSAAG+ACLV++L++L N+ + +LS +ARQGSGSACRSL+GGFV+W LG++ +G DS+
Sbjct: 125 SSAAGYACLVYTLSQLFNV---EGELSGVARQGSGSACRSLYGGFVQWKLGEQSDGKDSI 181
Query: 188 AVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEE 247
A Q+ E +W +L ++I VVS+ QK ST+GM SVETS LL++RA VVP R+ +M
Sbjct: 182 AEQVASELYWPELRVLILVVSAEQKSVGSTSGMHTSVETSHLLKYRADAVVPGRMEEMIR 241
Query: 248 AIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCS 307
AI+ DF F +LT DSNQFHA+CLDT PPIFY+N+ SH+IIS V R+N+ G +V
Sbjct: 242 AIRLRDFPKFGELTMKDSNQFHAICLDTYPPIFYLNNISHQIISLVHRYNQYYGETRVAY 301
Query: 308 FFAA 311
F A
Sbjct: 302 TFDA 305
>sp|Q54YQ9|MVD1_DICDI Diphosphomevalonate decarboxylase OS=Dictyostelium discoideum
GN=mvd PE=3 SV=1
Length = 391
Score = 310 bits (795), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 153/307 (49%), Positives = 205/307 (66%), Gaps = 15/307 (4%)
Query: 10 VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNG 69
VT P NIAVIKYWGKRDE +ILP+N S+S TL D L TTTT+ S + +D ++LNG
Sbjct: 6 VTCTAPVNIAVIKYWGKRDENIILPLNSSLSGTLHQDDLKTTTTIVASEDYTEDELYLNG 65
Query: 70 KEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASS 129
K+ + RYQN LK IRSRA + D +K +HIAS NNFPTAAGLASS
Sbjct: 66 KKEDINAVRYQNVLKMIRSRATKLMD------------KKHCVHIASINNFPTAAGLASS 113
Query: 130 AAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAV 189
A+G+ CLVF+LA++ + +S IAR GSGSACRS++GGFVKW +G + +GSDS+AV
Sbjct: 114 ASGYCCLVFTLAQMYGV---DGDISGIARLGSGSACRSMYGGFVKWEMGTKDDGSDSIAV 170
Query: 190 QLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAI 249
Q+ E HW D+ II+ VV+ ++KETSST GM++S TS++++ R VP R+ +EEAI
Sbjct: 171 QVQPESHWPDMNIIVLVVNDKKKETSSTDGMQKSAATSVMMKERCAVTVPNRMRDIEEAI 230
Query: 250 QNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFF 309
DF +F +T DS+ FH VC T+PPI+Y+NDTS I++ + R+N+ GS + F
Sbjct: 231 NKKDFQTFGDITMKDSDDFHEVCATTTPPIYYLNDTSRYIMNLIHRYNKLSGSIKCAYTF 290
Query: 310 AALSGRC 316
A C
Sbjct: 291 DAGPNAC 297
>sp|P53602|MVD1_HUMAN Diphosphomevalonate decarboxylase OS=Homo sapiens GN=MVD PE=1 SV=1
Length = 400
Score = 308 bits (790), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 167/311 (53%), Positives = 213/311 (68%), Gaps = 5/311 (1%)
Query: 1 MAAEKWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSF 60
MA+EK + VT P NIAVIKYWGKRDE L+LP+N S+SVTL D L TTTT +S F
Sbjct: 1 MASEKPLAAVTCTAPVNIAVIKYWGKRDEELVLPINSSLSVTLHQDQLKTTTTAVISKDF 60
Query: 61 DQDRMWLNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNF 120
+DR+WLNG+E +G R Q CL+EIR A ++ G + +H+AS NNF
Sbjct: 61 TEDRIWLNGREEDVGQPRLQACLREIRCLARKRRNSRDGDPLPSS--LSCKVHVASVNNF 118
Query: 121 PTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKE 180
PTAAGLASSAAG+ACL ++LA++ + +S LS +AR+GSGSACRSL+GGFV+W +G++
Sbjct: 119 PTAAGLASSAAGYACLAYTLARVYGV---ESDLSEVARRGSGSACRSLYGGFVEWQMGEQ 175
Query: 181 GNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPK 240
+G DS+A Q+ E HW +L ++I VVS+ +K T ST GMR SVETS LL+ RA+ VVP
Sbjct: 176 ADGKDSIARQVAPESHWPELRVLILVVSAEKKLTGSTVGMRASVETSPLLRFRAESVVPA 235
Query: 241 RIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSV 300
R+ +M I+ DF SFAQLT DSNQFHA CLDT PPI Y+N S RII V R+N
Sbjct: 236 RMAEMARCIRERDFPSFAQLTMKDSNQFHATCLDTFPPISYLNAISWRIIHLVHRFNAHH 295
Query: 301 GSPQVCSFFAA 311
G +V F A
Sbjct: 296 GDTKVAYTFDA 306
>sp|Q0P570|MVD1_BOVIN Diphosphomevalonate decarboxylase OS=Bos taurus GN=MVD PE=2 SV=1
Length = 400
Score = 305 bits (782), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 164/315 (52%), Positives = 215/315 (68%), Gaps = 13/315 (4%)
Query: 1 MAAEKWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSF 60
MA+EK +++VT P NIAV+KYWGKRDE LILP+N S+SVTL D L TTTT A+S F
Sbjct: 1 MASEKPIVVVTCTAPVNIAVVKYWGKRDEELILPINSSLSVTLHQDQLKTTTTAAISRDF 60
Query: 61 DQDRMWLNGKEISLGGGRYQNCLKEIR----SRACDVEDTEKGIKIEKKDWQKLHLHIAS 116
+DR+WLNG+E +G R Q CL+EIR R D + + + K +H+AS
Sbjct: 61 TEDRIWLNGREEDMGHPRLQACLREIRRLARKRRSDGHEDPLPLSLSYK------VHVAS 114
Query: 117 FNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWI 176
NNFPTAAGLASSAAG+ACL ++LA++ + S LS +AR+GSGSACRSL+GGFV+W
Sbjct: 115 ENNFPTAAGLASSAAGYACLAYTLARVYGV---DSDLSEVARRGSGSACRSLYGGFVEWQ 171
Query: 177 LGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKE 236
+G+ +G DS+A Q+ E HW +L ++I VVS+ +K ST GM+ SVETS LL+ RA+
Sbjct: 172 MGERPDGKDSVACQVAPESHWPELRVLILVVSAERKPMGSTAGMQTSVETSALLKFRAEA 231
Query: 237 VVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERW 296
+VP R+ +M I+ +F +F QLT DSNQFHA CLDT PPI Y++DTS RII V R+
Sbjct: 232 LVPPRMAEMTRCIRERNFQAFGQLTMKDSNQFHATCLDTFPPISYLSDTSRRIIQLVHRF 291
Query: 297 NRSVGSPQVCSFFAA 311
N G +V F A
Sbjct: 292 NAHHGQTKVAYTFDA 306
>sp|Q751D8|MVD1_ASHGO Diphosphomevalonate decarboxylase OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=MVD1
PE=3 SV=2
Length = 397
Score = 288 bits (736), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 150/287 (52%), Positives = 197/287 (68%), Gaps = 10/287 (3%)
Query: 7 VLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMW 66
+ + + P NIA +KYWGKRD L LP N SISVTL + L T T+ A P +DR+W
Sbjct: 3 IYVASTTAPVNIATLKYWGKRDSMLNLPTNSSISVTLSQEDLRTLTSAATGPELAEDRLW 62
Query: 67 LNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKL---HLHIASFNNFPTA 123
LNGK SLG R Q CL ++R+ + ++ E+ D ++ LHI S NNFPTA
Sbjct: 63 LNGKPESLGNARTQQCLADLRA-------LRRALETEEPDLPRMSEWKLHIVSENNFPTA 115
Query: 124 AGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNG 183
AGLASSAAGFA LV ++AKL L ++ S++S IAR+GSGSACRSL+GG+V W +G E +G
Sbjct: 116 AGLASSAAGFAALVVAVAKLYGLPQDYSEISKIARKGSGSACRSLYGGYVAWEMGAEADG 175
Query: 184 SDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIV 243
SDS AVQ+ D EHW ++ I VVS+ +K+T ST+GM+++V TS L + R VVP+R
Sbjct: 176 SDSRAVQIADVEHWPEMRAAILVVSADRKDTPSTSGMQQTVHTSDLFKERVATVVPRRYG 235
Query: 244 QMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRII 290
+M AI+ DF++FA+LT DSN FHA CLD+ PPIFYMNDTS RI+
Sbjct: 236 EMAAAIRARDFATFARLTMQDSNSFHATCLDSFPPIFYMNDTSRRIV 282
>sp|Q6BY07|MVD1_DEBHA Diphosphomevalonate decarboxylase OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=MVD1 PE=3 SV=2
Length = 388
Score = 287 bits (734), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 154/295 (52%), Positives = 200/295 (67%), Gaps = 4/295 (1%)
Query: 7 VLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMW 66
V +A P NIA +KYWGKRD++L LP N SISVTL + L T T+VA S F +D++W
Sbjct: 3 VYTSSATAPVNIATLKYWGKRDKSLNLPTNSSISVTLSQNDLRTLTSVAASEDFKEDKLW 62
Query: 67 LNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGL 126
LNGK SL R + CL ++R+ ++E + I + +HI S NNFPTAAGL
Sbjct: 63 LNGKLESLESERTKACLADLRTLRKELESNDSSIP----KLSQFGVHIVSENNFPTAAGL 118
Query: 127 ASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDS 186
ASSAAGFA LV S+AKL L +N S++S IAR+GSGSACRSLFGG+V W +G+E NG DS
Sbjct: 119 ASSAAGFAALVVSIAKLYELPQNMSEISKIARKGSGSACRSLFGGYVAWEMGQETNGEDS 178
Query: 187 LAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQME 246
AV++ HW ++ I VVS +K+T ST+GM+ +V TS L Q R KEVVPKR M+
Sbjct: 179 KAVEVAPLSHWPNMKAAILVVSDDKKDTPSTSGMQTTVATSDLFQWRIKEVVPKRFDDMK 238
Query: 247 EAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVG 301
++I DF++F LT DSN FHAVCLD++PPIFY+NDTS +II + N+ G
Sbjct: 239 DSILRKDFATFGDLTMKDSNSFHAVCLDSTPPIFYLNDTSKKIIKLIHELNKREG 293
>sp|P32377|MVD1_YEAST Diphosphomevalonate decarboxylase OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=MVD1 PE=1 SV=2
Length = 396
Score = 278 bits (710), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 154/305 (50%), Positives = 199/305 (65%), Gaps = 4/305 (1%)
Query: 7 VLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMW 66
V + P NIA +KYWGKRD L LP N SISVTL D L T T+ A +P F++D +W
Sbjct: 3 VYTASVTAPVNIATLKYWGKRDTKLNLPTNSSISVTLSQDDLRTLTSAATAPEFERDTLW 62
Query: 67 LNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGL 126
LNG+ S+ R QNCL+++R ++E + + + W+ LHI S NNFPTAAGL
Sbjct: 63 LNGEPHSIDNERTQNCLRDLRQLRKEMESKDASLPTLSQ-WK---LHIVSENNFPTAAGL 118
Query: 127 ASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDS 186
ASSAAGFA LV ++AKL L ++ S++S IAR+GSGSACRSLFGG+V W +GK +G DS
Sbjct: 119 ASSAAGFAALVSAIAKLYQLPQSTSEISRIARKGSGSACRSLFGGYVAWEMGKAEDGHDS 178
Query: 187 LAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQME 246
+AVQ+ D W + + VVS +K+ SST GM+ +V TS L + R + VVPKR M
Sbjct: 179 MAVQIADSSDWPQMKACVLVVSDIKKDVSSTQGMQLTVATSELFKERIEHVVPKRFEVMR 238
Query: 247 EAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVC 306
+AI DF++FA+ T DSN FHA CLD+ PPIFYMNDTS RIIS+ N+ G V
Sbjct: 239 KAIVEKDFATFAKETMMDSNSFHATCLDSFPPIFYMNDTSKRIISWCHTINQFYGETIVA 298
Query: 307 SFFAA 311
F A
Sbjct: 299 YTFDA 303
>sp|O13963|MVD1_SCHPO Diphosphomevalonate decarboxylase OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=mvd1 PE=3 SV=1
Length = 393
Score = 276 bits (705), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 160/334 (47%), Positives = 207/334 (61%), Gaps = 11/334 (3%)
Query: 4 EKWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQD 63
+K V T P NIAVIKYWGKRD L LP N SISVTL D L T TT + S F+ D
Sbjct: 2 DKKVYQCTVSAPVNIAVIKYWGKRDVALNLPTNSSISVTLSQDDLRTVTTASCSEKFEND 61
Query: 64 RMWLNGK-EISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQK---LHLHIASFNN 119
+WLNG E R + C++E+R D+E+ E D K L LH+ S NN
Sbjct: 62 TLWLNGNAEEIFANKRLRVCVEELRKARLDLEE-------ENDDLDKIGALKLHVVSENN 114
Query: 120 FPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGK 179
FPTAAGLASSAAG+A ++A+L +L +QLS IARQGSGSACRSLFGG+V W +G+
Sbjct: 115 FPTAAGLASSAAGYAAFCEAIARLYDLPWTPTQLSRIARQGSGSACRSLFGGYVAWEMGE 174
Query: 180 EGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVP 239
+G+DS+AVQ+ E+W ++ + + V S+ +K SST GM+ +V +S L QHR + +VP
Sbjct: 175 LHSGADSVAVQVEPVENWPEIRVAVLVASAAKKGVSSTAGMQATVASSTLFQHRIQNIVP 234
Query: 240 KRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRS 299
+RI +M+ AI+ DF +FA+LT DSNQFHA CLDT PPIFY+NDTS +I VE N +
Sbjct: 235 QRIQEMKTAIRERDFETFAKLTMTDSNQFHACCLDTFPPIFYLNDTSRAVIRVVENINAT 294
Query: 300 VGSPQVCSFFAALSGRCYEFCDLKHIFVLSILSA 333
G F A F + VL+ L A
Sbjct: 295 AGKTIAAYTFDAGPNAVIYFLEENSEIVLNTLYA 328
>sp|Q8R765|ISPE_THETN 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
OS=Thermoanaerobacter tengcongensis (strain DSM 15242 /
JCM 11007 / NBRC 100824 / MB4) GN=ispE PE=3 SV=1
Length = 287
Score = 37.4 bits (85), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%)
Query: 112 LHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGG 171
+ I F N P AAGLA +A A + +L KL NL + ++ IA + L GG
Sbjct: 83 IKIKLFKNIPLAAGLAGGSADAAATIVALDKLWNLNLTEKEMEEIASEVGSDVPFCLKGG 142
>sp|B2TIX0|CH60_CLOBB 60 kDa chaperonin OS=Clostridium botulinum (strain Eklund 17B /
Type B) GN=groL PE=3 SV=1
Length = 540
Score = 36.2 bits (82), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 24/42 (57%)
Query: 75 GGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIAS 116
GG Y N +KE+ DV+DTE GIKI K ++ IAS
Sbjct: 413 GGTAYINVIKEVEKLTSDVQDTELGIKIIVKSLEEPLRQIAS 454
>sp|Q8U0F3|KIME_PYRFU Mevalonate kinase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM
3638 / JCM 8422 / Vc1) GN=mvk PE=3 SV=1
Length = 334
Score = 35.0 bits (79), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 9/87 (10%)
Query: 102 IEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIAR--- 158
+E+ D + + + ++ + P AGL SSAA + +++KL+ L+ ++ +++ +
Sbjct: 91 LEEADKKNVGIKVSITSQIPVGAGLGSSAAVAVATIGAVSKLLGLELSKEEIAKMGHKTE 150
Query: 159 ---QGSGSACR---SLFGGFVKWILGK 179
QG+ S S GGF+ + GK
Sbjct: 151 LLVQGASSGIDPTVSAIGGFIFYEKGK 177
>sp|A4XLL8|ISPE_CALS8 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
OS=Caldicellulosiruptor saccharolyticus (strain ATCC
43494 / DSM 8903) GN=ispE PE=3 SV=1
Length = 290
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 105 KDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSA 164
K+ K+H+ N P +AGLA + A ++ L KL L +Q++L + R+
Sbjct: 80 KEGVKIHIQ----KNIPISAGLAGGSTDAAAVLRGLNKLFGLNLSQNELIELGREIGADV 135
Query: 165 CRSLFGG 171
L GG
Sbjct: 136 PFCLVGG 142
>sp|A3DI26|ISPE_CLOTH 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase OS=Clostridium
thermocellum (strain ATCC 27405 / DSM 1237) GN=ispE PE=3
SV=1
Length = 283
Score = 32.7 bits (73), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 114 IASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQ 159
I P AAGLA +A A ++ + +L NL ++++L I +Q
Sbjct: 87 IKILKRIPVAAGLAGGSADAAAVIKGMNELFNLNADEAELMDIGKQ 132
>sp|P0CV95|NES2_FRAAN (3S,6E)-nerolidol synthase 2, chloroplastic/mitochondrial
OS=Fragaria ananassa PE=1 SV=1
Length = 578
Score = 32.0 bits (71), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 77 GRYQNCLKEIRSRACDVEDT-EKGIKIEKKDWQKLHLHIASFNNFPTAAGLAS 128
G Y C E C +E+ EK I + +W+KL+ + S N FP LAS
Sbjct: 491 GSYVRCYLE-EHEGCSIEEAREKTINMISDEWKKLNRELLSPNPFPATITLAS 542
>sp|P0CV94|NES1_FRAAN (3S,6E)-nerolidol synthase 1 OS=Fragaria ananassa PE=1 SV=1
Length = 519
Score = 32.0 bits (71), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 77 GRYQNCLKEIRSRACDVEDT-EKGIKIEKKDWQKLHLHIASFNNFPTAAGLAS 128
G Y C E C +E+ EK I + +W+KL+ + S N FP + LAS
Sbjct: 432 GSYVRCYLE-EHEGCSIEEAREKTINMISDEWKKLNRELLSPNPFPASFTLAS 483
>sp|O75795|UDB17_HUMAN UDP-glucuronosyltransferase 2B17 OS=Homo sapiens GN=UGT2B17 PE=2
SV=1
Length = 530
Score = 32.0 bits (71), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 270 AVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRCYEFCD 321
A+ L+ P ND + +RW S+ S+F+ L C+E+ D
Sbjct: 71 AIKLEVYPTSLTKNDLEDFFMKMFDRWTYSISKNTFWSYFSQLQELCWEYSD 122
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.131 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120,982,499
Number of Sequences: 539616
Number of extensions: 4764726
Number of successful extensions: 11064
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 11030
Number of HSP's gapped (non-prelim): 21
length of query: 344
length of database: 191,569,459
effective HSP length: 118
effective length of query: 226
effective length of database: 127,894,771
effective search space: 28904218246
effective search space used: 28904218246
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)