Query 019218
Match_columns 344
No_of_seqs 217 out of 1477
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 07:40:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019218.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019218hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02407 diphosphomevalonate d 100.0 4.1E-67 9E-72 493.1 34.6 325 8-333 2-329 (343)
2 KOG2833 Mevalonate pyrophospha 100.0 4.6E-66 1E-70 469.1 32.4 314 4-321 2-315 (395)
3 TIGR01240 mevDPdecarb diphosph 100.0 3.1E-63 6.7E-68 468.1 32.4 302 10-335 1-304 (305)
4 COG3407 MVD1 Mevalonate pyroph 100.0 4.2E-57 9.2E-62 421.9 29.2 305 9-338 5-311 (329)
5 COG0083 ThrB Homoserine kinase 100.0 1.6E-43 3.5E-48 328.5 27.4 267 8-336 2-277 (299)
6 PTZ00299 homoserine kinase; Pr 100.0 7.1E-38 1.5E-42 298.9 26.6 272 9-338 7-303 (336)
7 TIGR00191 thrB homoserine kina 100.0 5.6E-34 1.2E-38 270.2 24.9 266 10-334 1-280 (302)
8 PRK01212 homoserine kinase; Pr 100.0 3.1E-33 6.6E-38 265.1 25.5 268 9-335 3-280 (301)
9 PLN02451 homoserine kinase 100.0 7.6E-33 1.6E-37 268.3 26.5 274 9-337 53-344 (370)
10 PRK03188 4-diphosphocytidyl-2- 100.0 3.2E-32 6.9E-37 258.1 23.9 268 9-333 2-275 (300)
11 PRK14611 4-diphosphocytidyl-2- 100.0 2.7E-30 5.9E-35 241.9 23.6 261 10-333 4-264 (275)
12 PRK14616 4-diphosphocytidyl-2- 100.0 1.9E-29 4E-34 237.7 23.6 267 8-336 4-275 (287)
13 PRK14612 4-diphosphocytidyl-2- 100.0 7.6E-30 1.6E-34 239.0 20.6 258 8-334 3-264 (276)
14 PRK14608 4-diphosphocytidyl-2- 100.0 2.4E-29 5.2E-34 237.1 23.9 261 9-333 8-277 (290)
15 PRK00128 ipk 4-diphosphocytidy 100.0 5.3E-29 1.2E-33 234.4 24.3 265 10-334 5-272 (286)
16 PRK02534 4-diphosphocytidyl-2- 100.0 6.8E-29 1.5E-33 236.5 24.7 277 9-335 5-291 (312)
17 PRK14615 4-diphosphocytidyl-2- 100.0 1.2E-28 2.5E-33 233.0 23.5 277 7-334 6-287 (296)
18 PRK14613 4-diphosphocytidyl-2- 100.0 1.3E-28 2.8E-33 232.7 23.4 272 11-340 2-292 (297)
19 TIGR00144 beta_RFAP_syn beta-R 100.0 7.5E-28 1.6E-32 229.9 27.2 274 9-338 2-305 (324)
20 PRK14614 4-diphosphocytidyl-2- 100.0 5.5E-27 1.2E-31 220.1 25.5 263 8-334 4-269 (280)
21 TIGR00154 ispE 4-diphosphocyti 100.0 7.7E-26 1.7E-30 213.6 27.0 269 10-334 4-274 (293)
22 PRK00343 ipk 4-diphosphocytidy 99.9 2.4E-25 5.1E-30 207.9 26.5 260 1-336 1-264 (271)
23 PTZ00298 mevalonate kinase; Pr 99.9 1.4E-25 3.1E-30 215.1 25.6 283 10-338 11-313 (328)
24 PRK14609 4-diphosphocytidyl-2- 99.9 2.4E-25 5.1E-30 207.7 25.6 144 8-175 1-146 (269)
25 PRK03926 mevalonate kinase; Pr 99.9 3.5E-25 7.7E-30 210.0 26.8 266 10-334 2-282 (302)
26 PRK14610 4-diphosphocytidyl-2- 99.9 8.8E-26 1.9E-30 212.1 20.1 264 8-334 4-270 (283)
27 PRK00650 4-diphosphocytidyl-2- 99.9 6.6E-25 1.4E-29 205.0 21.1 177 8-221 1-178 (288)
28 COG1947 IspE 4-diphosphocytidy 99.9 9.7E-25 2.1E-29 202.0 21.6 262 8-332 4-270 (289)
29 COG1577 ERG12 Mevalonate kinas 99.9 1E-23 2.2E-28 198.1 26.9 255 11-318 2-276 (307)
30 PRK01123 shikimate kinase; Pro 99.9 1.1E-22 2.4E-27 191.2 23.3 227 40-334 24-266 (282)
31 TIGR00549 mevalon_kin mevalona 99.9 9.2E-22 2E-26 183.8 26.1 245 24-317 8-270 (273)
32 PRK05905 hypothetical protein; 99.9 5.6E-22 1.2E-26 182.8 21.5 178 8-222 1-184 (258)
33 TIGR01920 Shik_kin_archae shik 99.9 1.4E-21 3E-26 181.6 24.0 224 40-333 18-253 (261)
34 PRK03817 galactokinase; Provis 99.9 6.4E-21 1.4E-25 184.6 29.2 279 11-336 2-329 (351)
35 TIGR00131 gal_kin galactokinas 99.9 5.4E-21 1.2E-25 187.3 28.8 276 10-335 18-364 (386)
36 TIGR01220 Pmev_kin_Gr_pos phos 99.9 7.5E-21 1.6E-25 184.3 28.3 293 11-341 2-348 (358)
37 COG1907 Predicted archaeal sug 99.9 8.3E-21 1.8E-25 172.9 24.7 280 9-339 3-293 (312)
38 PRK05322 galactokinase; Provis 99.9 1.1E-19 2.4E-24 177.9 28.8 281 10-338 20-368 (387)
39 PRK00555 galactokinase; Provis 99.9 1.9E-19 4E-24 174.9 29.6 283 8-340 1-345 (363)
40 KOG1537 Homoserine kinase [Ami 99.9 1.1E-21 2.4E-26 175.5 11.4 206 111-340 94-336 (355)
41 PRK04181 4-diphosphocytidyl-2- 99.9 3.7E-20 8E-25 171.2 18.4 181 8-222 1-185 (257)
42 PLN02677 mevalonate kinase 99.8 8.4E-19 1.8E-23 170.7 27.8 293 8-340 1-367 (387)
43 PRK05101 galactokinase; Provis 99.8 1.9E-18 4.1E-23 169.0 30.3 277 10-337 21-362 (382)
44 COG1685 Archaeal shikimate kin 99.8 1.6E-17 3.4E-22 150.2 21.5 247 8-334 1-260 (278)
45 COG0153 GalK Galactokinase [Ca 99.7 4.5E-15 9.8E-20 141.5 29.0 275 9-334 23-366 (390)
46 PRK13412 fkp bifunctional fuco 99.7 1.4E-15 3.1E-20 160.7 26.9 210 110-334 725-951 (974)
47 PLN02521 galactokinase 99.7 6.2E-15 1.3E-19 148.0 29.5 281 10-337 49-465 (497)
48 COG2605 Predicted kinase relat 99.7 1.6E-14 3.6E-19 132.0 22.8 278 11-334 3-313 (333)
49 KOG1511 Mevalonate kinase MVK/ 99.6 2.7E-13 5.8E-18 126.7 26.2 197 112-337 132-362 (397)
50 TIGR01219 Pmev_kin_ERG8 phosph 99.6 2.3E-12 5.1E-17 127.5 26.6 233 76-333 87-427 (454)
51 PLN02865 galactokinase 99.5 8.8E-12 1.9E-16 122.8 29.2 285 11-337 32-396 (423)
52 COG4542 PduX Protein involved 99.5 3E-12 6.4E-17 115.0 21.4 238 4-297 8-245 (293)
53 COG1829 Predicted archaeal kin 99.5 3.1E-11 6.8E-16 110.0 23.3 242 8-320 1-252 (283)
54 PTZ00290 galactokinase; Provis 99.5 1.3E-10 2.9E-15 115.7 29.5 288 10-338 38-437 (468)
55 PF00288 GHMP_kinases_N: GHMP 99.3 2.4E-12 5.3E-17 94.7 4.6 59 113-171 1-67 (67)
56 PF08544 GHMP_kinases_C: GHMP 98.5 7.5E-07 1.6E-11 67.9 7.6 80 245-336 1-84 (85)
57 KOG4644 L-fucose kinase [Carbo 97.6 0.0023 5.1E-08 63.4 14.7 192 110-319 690-904 (948)
58 COG3890 ERG8 Phosphomevalonate 97.3 0.087 1.9E-06 48.9 21.1 51 124-174 108-171 (337)
59 KOG0631 Galactokinase [Carbohy 97.3 0.014 3.1E-07 57.8 16.4 76 254-341 387-464 (489)
60 KOG4519 Phosphomevalonate kina 77.6 3.7 8E-05 39.3 4.6 55 256-316 357-411 (459)
61 KOG3282 Uncharacterized conser 50.6 79 0.0017 27.8 7.2 63 239-315 99-161 (190)
62 TIGR00162 conserved hypothetic 33.5 54 0.0012 28.9 3.7 33 130-162 127-159 (188)
63 PF06153 DUF970: Protein of un 28.3 1.3E+02 0.0028 24.2 4.7 45 291-337 15-66 (109)
64 PF00382 TFIIB: Transcription 27.9 94 0.002 22.3 3.7 31 128-158 35-65 (71)
65 TIGR00161 conserved hypothetic 27.9 72 0.0016 29.2 3.7 30 132-161 185-214 (238)
66 COG3870 Uncharacterized protei 27.0 85 0.0018 24.8 3.3 28 310-337 38-66 (109)
67 cd02430 PTH2 Peptidyl-tRNA hyd 25.3 3.6E+02 0.0079 21.7 8.5 35 276-312 49-83 (115)
68 COG1938 Archaeal enzymes of AT 25.0 88 0.0019 28.9 3.6 29 132-160 188-216 (244)
69 COG5405 HslV ATP-dependent pro 23.2 1.3E+02 0.0029 25.9 4.1 39 124-164 124-162 (178)
No 1
>PLN02407 diphosphomevalonate decarboxylase
Probab=100.00 E-value=4.1e-67 Score=493.06 Aligned_cols=325 Identities=79% Similarity=1.193 Sum_probs=288.6
Q ss_pred eEEEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecCcccCCCcchHHHHHHHHH
Q 019218 8 LMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIR 87 (344)
Q Consensus 8 ~~~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g~~~~~~~~~~~~~~~~~~ 87 (344)
.+++|+||+||||||||||||+.+++|.++|||++|+++++||+|+|+++++.+.|++++||+..+....++.++++.+|
T Consensus 2 ~~~ta~A~~NIALIKYWGKrD~~l~LP~nsSiSlTL~~~~~~T~Ttv~~~~~~~~D~~~LNG~~~~~~~~rv~~~l~~~r 81 (343)
T PLN02407 2 VMVTAQAPTNIAVIKYWGKRDEKLILPINSSISVTLDPDHLCATTTVAVSPSFDQDRLWLNGKEISLSGGRYQNCLREIR 81 (343)
T ss_pred eEEEEEecceeeeehhcccccccccCCCCCeeEEEccCCcceeeEEEEECCCCCCCEEEECCEecCcccHHHHHHHHHHH
Confidence 46899999999999999999999999999999999998889999999998765578999999876544569999999999
Q ss_pred HHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCC-HHHHHHHHHhccCcccc
Q 019218 88 SRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKEN-QSQLSAIARQGSGSACR 166 (344)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls-~~el~~lA~~~~Gs~a~ 166 (344)
+.++...+++.|..|++++....+++|.++|++|.++|||||||+.+|++.|++++++++++ .++|+.+|++|+||+|+
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~~~~I~S~N~~PtaaGLaSSAs~~aAl~~al~~~~~~~~~~~~~ls~lAr~GSGSa~r 161 (343)
T PLN02407 82 ARATDVEDEEKGIKITKKDWEKLHVHIASYNNFPTAAGLASSAAGFACLVFALAKLMNVKEDFPGELSAIARQGSGSACR 161 (343)
T ss_pred HHhcccccccccccccccccccccEEEEeccCCccccchHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHhccChHHHH
Confidence 98876555566666665555445799999999999999999999999999999999999999 99999999999999999
Q ss_pred ccccCEEEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCchhhhhhhhhhchhHHHHHhhhhHHHHHHHH
Q 019218 167 SLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQME 246 (344)
Q Consensus 167 s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 246 (344)
|+|||+|.|..|...++.+++.+++..+.+||++++++++++..+|+++||++|+..+.++|+|+.|+.+.+..++..+.
T Consensus 162 S~~Gg~v~w~~G~~~d~~ds~A~~i~~~~~~~dl~~~i~vv~~~~K~vsSt~GM~~tv~TSp~~~~w~~~~~~~~~~~~~ 241 (343)
T PLN02407 162 SLYGGFVKWNMGKKEDGSDSIAVQLADEKHWDDLVIIIAVVSSRQKETSSTSGMRESVETSPLLQHRAKEVVPKRILQME 241 (343)
T ss_pred HhhCCeEEecCCCCCCCCceeEEECCCccCCccceEEEEEEcCCcCCCCchHHHHHhhhcChhHHHHHHhhhHHHHHHHH
Confidence 99999999988754456789999997656789999999999999999999999999889999999999875689999999
Q ss_pred HHHHhCCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCCCcEEEeecCCc-h
Q 019218 247 EAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRCYEFCDLKH-I 325 (344)
Q Consensus 247 ~al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGpt~~~~~~~~~~-~ 325 (344)
.||.++||+.|+++++.|++.||+++++++|++.||+|.+.++++.|+++|++.|.+.++||+|||||++ +++.+++ .
T Consensus 242 ~Ai~~~Df~~~gei~e~ds~~mHA~~l~s~Pp~~Y~~~~S~~ii~~V~~~r~~~g~~~v~yT~DAGPNv~-vl~~~~~~~ 320 (343)
T PLN02407 242 EAIKNRDFASFAKLTCADSNQFHATCLDTSPPIFYMNDTSRRIISLVEKWNRSEGTPQVAYTFDAGPNAV-LIALNRKVA 320 (343)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEeChHHHHHHHHHHHHHHhcCCccEEEEecCCCCEE-EEEChhhhH
Confidence 9999999999999999999999999999999999999999999999999997657535999999999999 6666554 4
Q ss_pred H-HHHHHHH
Q 019218 326 F-VLSILSA 333 (344)
Q Consensus 326 ~-~~~~l~~ 333 (344)
+ +.+.+..
T Consensus 321 ~~v~~~~~~ 329 (343)
T PLN02407 321 AQLLQRLLY 329 (343)
T ss_pred HHHHHHHHH
Confidence 4 6655543
No 2
>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]
Probab=100.00 E-value=4.6e-66 Score=469.12 Aligned_cols=314 Identities=61% Similarity=0.932 Sum_probs=289.6
Q ss_pred ccceeEEEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecCcccCCCcchHHHHH
Q 019218 4 EKWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCL 83 (344)
Q Consensus 4 ~~~~~~~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g~~~~~~~~~~~~~~ 83 (344)
++|+.++++.+|-|||+||||||||+.+++|.+|||+++|++++|++.|++..+++.+.+++++||++++..+.+.++|+
T Consensus 2 ~k~~~~~t~taPvNIAvIKYWGKRD~~l~LP~N~SISvTL~~D~L~t~Tt~~~s~~fe~dr~wLNGk~~~i~~~R~q~cl 81 (395)
T KOG2833|consen 2 DKPVAEVTATAPVNIAVIKYWGKRDEELNLPTNDSISVTLSQDDLCTLTTAVVSPSFEEDRMWLNGKEVPISNKRYQRCL 81 (395)
T ss_pred CCcceeEEeeccceeeeeeeccccchhhcCCcCCceeEEeccccceeeeeEeeccccccceeEECCceeccccHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999998887667899999999888788999999
Q ss_pred HHHHHHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCc
Q 019218 84 KEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGS 163 (344)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~~~~Gs 163 (344)
+.+|++.+..++.+. ++++.. ..+++|.+.||+|.++||+||||..+|++.|++++|+++.+++||.++|++|+||
T Consensus 82 ~e~r~~~~d~~~~~~--~~~~~~--~~~lHI~S~nNFPtAAGLASSAAG~Aalv~alarly~l~~~~~els~iAR~GSGS 157 (395)
T KOG2833|consen 82 REIRRLARDREESEA--SLPSNG--PLKLHIASVNNFPTAAGLASSAAGFAALVLALARLYGLDDSPEELSRIARQGSGS 157 (395)
T ss_pred HHHHHHhhhhhhhhc--ccCcCC--CeeEEEEecCCCcchhhhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHhccCch
Confidence 999998876432222 344332 3589999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCEEEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCchhhhhhhhhhchhHHHHHhhhhHHHHH
Q 019218 164 ACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIV 243 (344)
Q Consensus 164 ~a~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (344)
+|+|+|||||.|..|..++|.++.+.++.+..+||++++.++|+....|.++||++|++.+.++.+++.++.++..+++.
T Consensus 158 ACRSl~GG~V~W~mG~~~DGsDsvAvq~~p~~~W~el~ililVvs~~~K~t~ST~GM~~sveTS~L~qhRi~~vVP~Ri~ 237 (395)
T KOG2833|consen 158 ACRSLYGGFVAWEMGELDDGSDSVAVQIAPSSHWPELRILILVVSDAKKKTGSTEGMRRSVETSQLLQHRIESVVPQRIQ 237 (395)
T ss_pred hhhhhhcceeEeecccccCCCceeEEEeccccCCCceEEEEEEeccccccccccHHHHHHHHHhHHHHHHHHhhhHHHHH
Confidence 99999999999999988888899999988878999999999999999999999999999999999999999988899999
Q ss_pred HHHHHHHhCCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCCCcEEEeec
Q 019218 244 QMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRCYEFCD 321 (344)
Q Consensus 244 ~l~~al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGpt~~~~~~~ 321 (344)
+|.+|+.++||+.|.++.|.|+++||++++++.|+++|+++.+.+++++|+++++..|...++||+|||||.|+++.+
T Consensus 238 ~m~eaI~~rDF~~FA~lTm~DSNqFHAvclDT~PPI~YmNd~S~~iI~~vh~~N~~~G~t~vAYTFDAGPNAvl~~l~ 315 (395)
T KOG2833|consen 238 QMREAIRERDFESFAKLTMKDSNQFHAVCLDTFPPIFYLNDTSWRIISLVHEFNASAGGTRVAYTFDAGPNAVLIVLE 315 (395)
T ss_pred HHHHHHHhcCHHHHHHHHHhcchhhhhhhhccCCCeEEeccchHHHHHHHHHHHhccCCeeEEEEecCCCceEEEEhh
Confidence 999999999999999999999999999999999999999999999999999999778888899999999999954433
No 3
>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase. Alternate names: mevalonate diphosphate decarboxylase; pyrophosphomevalonate decarboxylase
Probab=100.00 E-value=3.1e-63 Score=468.14 Aligned_cols=302 Identities=41% Similarity=0.588 Sum_probs=271.3
Q ss_pred EEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecCcccCC-CcchHHHHHHHHHH
Q 019218 10 VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISL-GGGRYQNCLKEIRS 88 (344)
Q Consensus 10 ~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g~~~~~-~~~~~~~~~~~~~~ 88 (344)
.+|+||+||||||||||||+.+++|.++|||++||. +|++++|+.+++.+.|++++||+.... ..+++..+++.+++
T Consensus 1 ~t~~a~~NIAliKYwGk~d~~~~lP~n~SisltLd~--~~T~ttv~~~~~~~~d~~~lnG~~~~~~~~~~v~~~l~~~~~ 78 (305)
T TIGR01240 1 ASVTAYVNIATIKYWGKRNTKLNLPTNSSISLTLSQ--LRTLTSVAFADEFERDTFYLNGTLQHSIDNEKTSNCLDDFRQ 78 (305)
T ss_pred CceeccchhHHhhhcccccccccCCCCCeeEEEcCC--CccEEEEEECCCCCcceEEECCcCCCCcchHHHHHHHHHHHH
Confidence 379999999999999999999999999999999994 999999998865556799999964332 36788999999999
Q ss_pred HccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcccccc
Q 019218 89 RACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSL 168 (344)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~~~~Gs~a~s~ 168 (344)
..+. ..+++|+++|+||.++|||||||+++|++.|++++++++++.++|+++|++++||+++|+
T Consensus 79 ~~~~----------------~~~v~I~~~n~iP~~aGLgSSAA~~aA~~~Al~~l~~l~l~~~eL~~lA~~gsGsa~~s~ 142 (305)
T TIGR01240 79 LRKE----------------QEKLHIVSQNNFPTAAGLASSASGLAALVSACAKLYQLPLDTSELSRIARKGSGSACRSL 142 (305)
T ss_pred hcCC----------------CCceEEEEecCCCCCCccchHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCeeeee
Confidence 8765 356999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCEEEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCchhhhhhhhhhchhHHHHHhhhhHHHHHHHHHH
Q 019218 169 FGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEA 248 (344)
Q Consensus 169 ~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 248 (344)
|||++.|..|. .+.+++..+++.+.+||++.++++++|..+++++||++|+.++++++++++|+.+ ...++..++.|
T Consensus 143 ~GG~v~~~~g~--~~~~s~a~~i~~~~~~~~~~~~v~vv~~~~k~vsSt~gm~~~~~ts~~~~~~v~~-~~~~l~~~~~a 219 (305)
T TIGR01240 143 FGGYVAWEKGK--DDHSSAAVQVADDSDWPQXAMCVLVVNDIKKDVSSRQGMQLTVATSELFKEWIEH-VVPDFEVXRKA 219 (305)
T ss_pred ecCeEEEEcCC--CCCCeeEEECCCccccccceEEEEEcCCCCCCCCCHHHHHHhhhcCccHHHHHHH-HHHHHHHHHHH
Confidence 99999998763 3457888999765578889999999999999999999999999999999999987 36579999999
Q ss_pred HHhCCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCCCcEEEeecCCc-hHH
Q 019218 249 IQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRCYEFCDLKH-IFV 327 (344)
Q Consensus 249 l~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGpt~~~~~~~~~~-~~~ 327 (344)
|.++|+++|+++++.|++.||+++++++|++.||+|++.++++.|+++|+ .|.. ++||+||||||+ +++++++ +.+
T Consensus 220 i~~~D~~~~g~~~e~~~~~mHa~~~~~~p~~~y~~~~s~~ii~~v~~~r~-~g~~-~~~T~DAGpNv~-vl~~~~~~~~v 296 (305)
T TIGR01240 220 IKTKDFATFGKETEANSLSMHATTLDAFPPFFYLNDTSKRAMSAVHTLRQ-GGTI-CYFTMDAGPNVK-VLYLAENLSKL 296 (305)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHhcCCCCeEEECHHHHHHHHHHHHHHh-CCCc-EEEEEcCCCCEE-EEEccccHHHH
Confidence 99999999999999999999999999999999999999999999999996 5875 999999999999 6666655 778
Q ss_pred HHHHHHHh
Q 019218 328 LSILSASA 335 (344)
Q Consensus 328 ~~~l~~~~ 335 (344)
.+.++..|
T Consensus 297 ~~~~~~~~ 304 (305)
T TIGR01240 297 FEFIYKLF 304 (305)
T ss_pred HHHHHHhc
Confidence 88887655
No 4
>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism]
Probab=100.00 E-value=4.2e-57 Score=421.89 Aligned_cols=305 Identities=39% Similarity=0.582 Sum_probs=267.9
Q ss_pred EEEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEE-EEcCCCCcceEEecCcccCCCcchHHHHHHHHH
Q 019218 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTV-AVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIR 87 (344)
Q Consensus 9 ~~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v-~~~~~~~~~~i~i~g~~~~~~~~~~~~~~~~~~ 87 (344)
.++++||||||+||||||+|+.+|+|.++||||+++ ++|+++++ ++.++.+.|++++||+..++.+.++.++++.+|
T Consensus 5 ~~t~~ay~nialIKywGk~D~~l~iP~~~SiS~t~~--df~t~t~~~~~~~~~~~D~~~lNG~~~~~~~~k~~~~ld~~R 82 (329)
T COG3407 5 IITASAYPNIALIKYWGKRDEALNIPLNSSISVTLE--DFSTTTTAEELTENDEEDTFILNGELSEDENEKARRVLDRFR 82 (329)
T ss_pred ceeeEecchhHHHHhccccchhhcCCCCCeeEEEec--cccceeEEEEecCCCCccEEEECCccCchHHHHHHHHHHHHH
Confidence 378999999999999999999999999999999995 38998888 555544568999999987666788999999999
Q ss_pred HHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCccccc
Q 019218 88 SRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRS 167 (344)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~~~~Gs~a~s 167 (344)
+.++. .++++|+++|++|.++|||||||+++|++.|+++++++++|..+|+++||.++||+++|
T Consensus 83 ~~~~~----------------~~~~~i~s~n~~ptaaGLaSSaag~AAl~~Al~~~~~~~~d~~~lS~~AR~gSGSa~RS 146 (329)
T COG3407 83 KEYGI----------------SFKVKIVSYNNFPTAAGLASSAAGAAALAAALNRLYDLDLDDEFLSRIARLGSGSASRS 146 (329)
T ss_pred Hhhcc----------------cceEEEEEecCCCccccccccHHHHHHHHHHHHhhhccCCCHHHHHHHHHHhccchhhh
Confidence 98875 57899999999999999999999999999999999999999999999999999999999
Q ss_pred cccCEEEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCchhhhhhhhhhchhHHHHHhhhhHHHHHHHHH
Q 019218 168 LFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEE 247 (344)
Q Consensus 168 ~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 247 (344)
+|||+++|..+.+ .++...++.....|+++..+++++.+..+.++|+++|+....++++|++|+.+ +...+..+..
T Consensus 147 ~~Gg~~~W~~~~g---~~~~~~~~~~~~~~~e~~~i~~~~~~~~k~vsS~~gm~~~~~tS~~y~~w~~~-~~~~~~~m~~ 222 (329)
T COG3407 147 IFGGFVLWEKGEG---EDSAAEQLFRLDLWKELAMIVLVISPKKKKVSSREGMQLTAETSPFYDAWLEH-SEEDLEEMKE 222 (329)
T ss_pred hcCCeeEeccCCC---CccceeeeccccCccccceEEEEEccccCCCCchHHHHHHHHcChHHHHHHHH-HHHhHHHHHH
Confidence 9999999987652 33334444433356777777777777778999999999878899999999986 4677789999
Q ss_pred HHHhCCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCCCcEEEeecCCc-hH
Q 019218 248 AIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRCYEFCDLKH-IF 326 (344)
Q Consensus 248 al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGpt~~~~~~~~~~-~~ 326 (344)
++.++|++.|++.++.|.+.||++++++.|++.|+++++.++++.|+++|+. |-. ++||+||||||. +++.+++ +.
T Consensus 223 ~~~~~Df~~i~~~~e~dsl~mHA~l~~s~p~~~y~~~~s~~ii~~v~~~r~~-g~~-~~fT~DaGPnV~-v~~~~~~l~~ 299 (329)
T COG3407 223 AIREKDFEKIGELAENDSLEMHATLMSSGPPFFYLTDESLRIIEFVHELRKE-GNA-VYFTMDAGPNVK-VITLEENLID 299 (329)
T ss_pred HHhccCHHHHHHHHHhhHHHHHHHHhccCCceEEECccHHHHHHHHHHHHhc-CCc-eEEEEcCCCceE-EEEecccHHH
Confidence 9999999999999999999999999999999999999999999999999964 554 999999999999 6666666 77
Q ss_pred HHHHHHHHhhhC
Q 019218 327 VLSILSASAREN 338 (344)
Q Consensus 327 ~~~~l~~~~~~~ 338 (344)
+.+.+...+...
T Consensus 300 ~~~~~~~~~~~~ 311 (329)
T COG3407 300 LLEILKTLECID 311 (329)
T ss_pred HHHHHhhccccc
Confidence 888888877653
No 5
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-43 Score=328.51 Aligned_cols=267 Identities=18% Similarity=0.177 Sum_probs=211.6
Q ss_pred eEEEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecCcc---cCCC-cchHHHHH
Q 019218 8 LMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE---ISLG-GGRYQNCL 83 (344)
Q Consensus 8 ~~~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g~~---~~~~-~~~~~~~~ 83 (344)
|++++++|+++||+ +|||||+|+||+ +|+++.++...+ ..++.++|+. ++.. ++.+.+++
T Consensus 2 ~~~~v~aPASSANl-----------GpGFD~lGlAl~---~~~~~~v~~~~~--~~~i~~~g~~~~~iP~~~~n~~~~~~ 65 (299)
T COG0083 2 LMMKVRVPASSANL-----------GPGFDVLGLALD---LYNDVVVVEVVD--KFEIEVEGEGADKIPLDPENLVYQAA 65 (299)
T ss_pred ceEEEEEeeccccc-----------CCCccceeeecc---ccCcEEEEEecC--cEEEEEecccccCCCCCcceeHHHHH
Confidence 67899999999998 899999999999 899988876542 4667677742 3332 44778888
Q ss_pred HHHHHHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCc
Q 019218 84 KEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGS 163 (344)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~~~~Gs 163 (344)
..+.+.++. +.+++|+++|+||++||||||||++||++.|+|++++.+|++++++++|.++|||
T Consensus 66 ~~~~~~~~~----------------~~~~~i~i~k~IP~~rGLGSSaAsiVAal~aan~l~~~~L~~~~ll~~a~~~EgH 129 (299)
T COG0083 66 LKFLEALGI----------------EAGVKIRIEKGIPLGRGLGSSAASIVAALAAANELAGLPLSKEELLQLALEIEGH 129 (299)
T ss_pred HHHHHHhCC----------------CccEEEEEEcCCCCCCCCcHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcCC
Confidence 888887775 3349999999999999999999999999999999999999999999999999996
Q ss_pred ---cccccccCEEEEecccCCCCCCceEEEcCCCCCCC-CceEEEEEECCCCcccCchhhhhhhhhhchhHHHHHhhhhH
Q 019218 164 ---ACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWN-DLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVP 239 (344)
Q Consensus 164 ---~a~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~-~l~~~vlv~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 239 (344)
++||++||++++... .+....+++ |+ ++++++++ |.. ++ +|+.+|.++|+...+++.+.+ .
T Consensus 130 pDNVapa~lGG~~l~~~~-----~~~~~~~v~----~~~~~~~v~~i-P~~--e~-sT~~aR~vLP~~~~~~daV~n--~ 194 (299)
T COG0083 130 PDNVAPAVLGGLVLVEEE-----SGIISVKVP----FPSDLKLVVVI-PNF--EV-STAEARKVLPKSYSRKDAVFN--L 194 (299)
T ss_pred CchHHHHhhCCEEEEeec-----CCceEEEcc----CCcceEEEEEe-CCc--cc-cHHHHHHhccccCCHHHHHHH--H
Confidence 699999999876531 122345554 44 67766665 432 33 666788899988778888887 8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCCCcEEEe
Q 019218 240 KRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRCYEF 319 (344)
Q Consensus 240 ~~~~~l~~al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGpt~~~~~ 319 (344)
++++.|+.||.++|.+++.. +++| .+| +|||..++|.+.++.+.+.+ .|++ +.++||||||++ ++
T Consensus 195 s~~a~lv~al~~~~~~l~~~-~~~D--~ih------epyR~~L~P~~~~v~~~a~~----~gA~-g~~lSGAGPTi~-al 259 (299)
T COG0083 195 SRAALLVAALLEGDPELLRA-MMKD--VIH------EPYRAKLVPGYAEVREAALE----AGAL-GATLSGAGPTVF-AL 259 (299)
T ss_pred HHHHHHHHHHHcCCHHHHHH-Hhcc--ccc------hhhhhhhCccHHHHHHHHhh----CCce-EEEEecCCCeEE-EE
Confidence 89999999999999666655 5554 899 46667799999999987765 7998 889999999999 77
Q ss_pred ecCCc-hHHHHHHHHHhh
Q 019218 320 CDLKH-IFVLSILSASAR 336 (344)
Q Consensus 320 ~~~~~-~~~~~~l~~~~~ 336 (344)
+++.+ +.+.+.++..+.
T Consensus 260 ~~~~~~e~~~~~~~~~~~ 277 (299)
T COG0083 260 ADESDAEKAAALLEELYE 277 (299)
T ss_pred eccchhhHHHHHHHHHHH
Confidence 76654 445555555444
No 6
>PTZ00299 homoserine kinase; Provisional
Probab=100.00 E-value=7.1e-38 Score=298.88 Aligned_cols=272 Identities=17% Similarity=0.163 Sum_probs=207.7
Q ss_pred EEEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecCcc---cCC-CcchHHHHHH
Q 019218 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE---ISL-GGGRYQNCLK 84 (344)
Q Consensus 9 ~~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g~~---~~~-~~~~~~~~~~ 84 (344)
++++++|+++||+ +|||||+|+||+ +|++++|+..+ ..++.++|+. .+. ..+.+.++++
T Consensus 7 ~~~v~vPATsANl-----------GpGFDsLGlAL~---lyd~v~v~~~~---~~~i~i~G~~~~~lp~~~~nlv~~a~~ 69 (336)
T PTZ00299 7 KVVLRVPATTANI-----------GPAYDTLGMALS---IFMELTVEHAD---AFSMTVEGEGSEHISTDEDNMVVQACR 69 (336)
T ss_pred eEEEEEecccccc-----------cccHHHHhhhcc---cCcEEEEEECC---CCEEEEecCCcCCCCCCcchHHHHHHH
Confidence 5789999999998 899999999999 99999998753 3457777753 122 2566667777
Q ss_pred HHHHHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCC---HHHHHHHHHhcc
Q 019218 85 EIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKEN---QSQLSAIARQGS 161 (344)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls---~~el~~lA~~~~ 161 (344)
.+.+.++.. ..++++|+++|+||+++|||||||+++|++.|+|++++.+++ .+||.++|.++|
T Consensus 70 ~~~~~~~~~--------------~~~g~~i~i~k~IP~~~GLGSSsA~avA~l~a~n~l~g~~l~~~~~~el~~~A~~~E 135 (336)
T PTZ00299 70 LAFEEYAHK--------------SMPPLKFIMHSNIPYGCGCGSSSAAAVAGFVAGMKLCGLTMETENEEALLQAIAKFE 135 (336)
T ss_pred HHHHHhcCC--------------CCCceEEEEecCCCccCCccHHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHhhc
Confidence 776665431 024699999999999999999999999999999999999995 789999999999
Q ss_pred Cc---cccccccCEEEEec-ccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCchhhhhhhhhhchhHHHHHhhh
Q 019218 162 GS---ACRSLFGGFVKWIL-GKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEV 237 (344)
Q Consensus 162 Gs---~a~s~~GG~v~~~~-~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 237 (344)
|| ++||++||+++... +.+ +....+++.+ +++++++++ |....++ +|+.+|+++|+...+++.+.+
T Consensus 136 GHpDNVapal~GG~~~~~~~~~g----e~~~~~i~~~---~~~~~vv~i-P~~~~~~-sT~~aR~vLP~~v~~~dav~n- 205 (336)
T PTZ00299 136 GHPDNAAPAIYGGIQLVYKKDNG----RFLTYRVPTP---PNLSVVLFV-PHNKMKA-NTHVTRNLIPTSVSLEDAVFN- 205 (336)
T ss_pred CCcccHHHHHhCCEEEEEecCCC----ceEEEecCCC---CCeEEEEEE-CCCCccc-cHHHHHhhCcccCcHHHHHHh-
Confidence 93 69999999987542 211 1224455421 466766665 5432123 456789888876656677776
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHhhhHHhhhhccCCCCee-eecccHHHHHHHHHHHHhhcCCceEEEEecCCCCcE
Q 019218 238 VPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIF-YMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRC 316 (344)
Q Consensus 238 ~~~~~~~l~~al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~-~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGpt~~ 316 (344)
.++.+.++.+|.++|++++.. + . ++|| +|||. .++|.+.++.+.+.+ .|++ ++++||||||++
T Consensus 206 -~~~~~~lv~al~~~d~~ll~~-~-~--D~lh------ep~R~~~liP~~~~v~~~~~~----~Ga~-g~~lSGSGPTv~ 269 (336)
T PTZ00299 206 -ISRTSILVLALSTGDLRMLKS-C-S--DKLH------EQQRSDALFPHFRPCVKAARE----AGAH-YAFLSGAGPSVC 269 (336)
T ss_pred -hhHHHHHHHHHHhCCHHHHHh-c-h--hccc------CcccccccCccHHHHHHHHHH----CCCe-EEEEEchhhhhe
Confidence 677888999999999999964 4 3 4899 67875 899999999999865 7887 888889999999
Q ss_pred EEeecC------------C-chHHHHHHHHHhhhC
Q 019218 317 YEFCDL------------K-HIFVLSILSASAREN 338 (344)
Q Consensus 317 ~~~~~~------------~-~~~~~~~l~~~~~~~ 338 (344)
.++++ + .+++.++|++.+.+.
T Consensus 270 -al~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 303 (336)
T PTZ00299 270 -ALVGGRHGDPLTQPREERKAESVAEAMIKAAEAV 303 (336)
T ss_pred -EEeccccccccccccchhHHHHHHHHHHHHHHHc
Confidence 66652 1 256888888887654
No 7
>TIGR00191 thrB homoserine kinase. P.aeruginosa homoserine kinase seems not to be homologous (see PROSITE:PDOC0054)
Probab=100.00 E-value=5.6e-34 Score=270.25 Aligned_cols=266 Identities=16% Similarity=0.140 Sum_probs=189.5
Q ss_pred EEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEE----cCCCCcceEEecCcc---cCC--CcchHH
Q 019218 10 VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAV----SPSFDQDRMWLNGKE---ISL--GGGRYQ 80 (344)
Q Consensus 10 ~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~----~~~~~~~~i~i~g~~---~~~--~~~~~~ 80 (344)
+++++|+++||+ +|||||+|+||+ +|++++++. ... ..++.+.|.. ++. +++.+.
T Consensus 1 ~~v~vpatsaNl-----------g~GfD~lg~al~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~p~~~~~Nlv~ 64 (302)
T TIGR00191 1 FRVKVPASSANL-----------GPGFDVLGAALS---LYLGLTVTDVVAQESD--DTEIEAEGEGVEKIPTEPTDNLIY 64 (302)
T ss_pred CEEEEecchhcc-----------ccChhhhhhhcc---ccceEEEEeeecccCC--CceEEEEecccccCCCCcccccHH
Confidence 367889999998 899999999999 999999975 321 1135554432 222 257888
Q ss_pred HHHHHHHHHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 019218 81 NCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQG 160 (344)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~~~ 160 (344)
++++.+++.++.. ..+++|+++++||+++|||||||+++|++.|++++++.+++.++|.++|.++
T Consensus 65 ~a~~~~~~~~g~~---------------~~g~~i~i~~~IP~~~GLGSSsa~~vA~l~a~~~l~~~~l~~~el~~~a~~~ 129 (302)
T TIGR00191 65 QVAKRFLDQLGIR---------------MPPVKVTLEKNIPLGRGLGSSAAAIVAALAAANELCGLPLSKERLLDYASEL 129 (302)
T ss_pred HHHHHHHHHcCCC---------------CCCEEEEEEcCCCCcCCCChHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh
Confidence 9999998887751 1579999999999999999999999999999999999999999999999999
Q ss_pred cCc---cccccccCEEEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCchhhhhhhhhhchhHHHHHhhh
Q 019218 161 SGS---ACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEV 237 (344)
Q Consensus 161 ~Gs---~a~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 237 (344)
|+| +++++|||++++.... ......+++. .+++++++++ |. .+++| ..+++.++......+.+.+
T Consensus 130 E~h~Dnv~~~l~GG~~~~~~~~----~~~~~~~~~~---~~~~~~vl~~-p~--~~~sT-~~a~~~lp~~~~~~~~v~~- 197 (302)
T TIGR00191 130 EGHPDNVAPALLGGFQLAFVED----DKLEVLKIPI---FSKLDWVLAI-PN--IEVST-AEARAVLPKAYPRQDLVFN- 197 (302)
T ss_pred cCCcccHHHHhccCEEEEEEcC----CceEEEEeCC---CCCEEEEEEE-CC--CcccH-HHHHHhCcccCCHHHHHHH-
Confidence 974 6889999998864321 1111222321 1456665554 43 23444 4445555543223444444
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCCCcEE
Q 019218 238 VPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRCY 317 (344)
Q Consensus 238 ~~~~~~~l~~al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGpt~~~ 317 (344)
..++..++.+|.+++++. ++.+++ +++|+ |++..+.|.+.++++.+.+ .|++ ++.+||||||++
T Consensus 198 -~~~~~~l~~al~~~~~~l-~~~~~~--d~l~e------~~~~~l~p~l~~i~~~~~~----~Ga~-g~~lSGsGptv~- 261 (302)
T TIGR00191 198 -LSHLAGLVHAIYQKKPDL-GAIMMK--DRIHQ------PYRESLIPNLFKIKQAALE----KGAY-GITISGSGPTIL- 261 (302)
T ss_pred -HHHHHHHHHHHHcCCHHH-HHHHcc--cccch------hhHhhhCCCHHHHHHHHHH----CCCe-EEEEEchhhhhe-
Confidence 556677889999998765 455555 47795 5555689999999888765 6887 777889999998
Q ss_pred EeecCCc--hHHHHHHHHH
Q 019218 318 EFCDLKH--IFVLSILSAS 334 (344)
Q Consensus 318 ~~~~~~~--~~~~~~l~~~ 334 (344)
++++++. +.+.+.++..
T Consensus 262 al~~~~~~~~~~~~~~~~~ 280 (302)
T TIGR00191 262 AMADEEFAEQKEQDLLEVL 280 (302)
T ss_pred EEecchhhHHHHHHHHHHH
Confidence 6665443 2245555544
No 8
>PRK01212 homoserine kinase; Provisional
Probab=100.00 E-value=3.1e-33 Score=265.08 Aligned_cols=268 Identities=19% Similarity=0.223 Sum_probs=196.4
Q ss_pred EEEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCC-cceEEecCc---ccCC--CcchHHHH
Q 019218 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFD-QDRMWLNGK---EISL--GGGRYQNC 82 (344)
Q Consensus 9 ~~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~-~~~i~i~g~---~~~~--~~~~~~~~ 82 (344)
++++++|+++|++ +||||++|++|+ +|++++|+..++.. ..++.+.|. .++. .++.+.++
T Consensus 3 ~~~v~~pat~anl-----------g~gfd~lG~al~---~~d~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~Nli~~a 68 (301)
T PRK01212 3 MVKVRVPATSANL-----------GPGFDSLGLALS---LYDEVLVGDVVSVEAEFSIEVIGEGADKLPLDPEKNLVYQA 68 (301)
T ss_pred eEEEEEecchhhc-----------ccChhhhhcccc---CccEEEEEEccCCCCceEEEEEecCCCcCCCCCccccHHHH
Confidence 5889999999998 899999999998 99999998653100 122555443 1222 25788999
Q ss_pred HHHHHHHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccC
Q 019218 83 LKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSG 162 (344)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~~~~G 162 (344)
++.+++.++. ..+++|+++|+||.++|||||||+++|++.|++++++.+++.++|+++|.++++
T Consensus 69 ~~~~~~~~~~----------------~~~~~I~i~k~IP~~~GLGssSa~aaA~l~al~~l~~~~l~~~eL~~~a~~~e~ 132 (301)
T PRK01212 69 ALKFLEKLGK----------------PPGLRIELEKNIPLGRGLGSSAASIVAGLVAANELAGLPLSKEELLQLATEGEG 132 (301)
T ss_pred HHHHHHHcCC----------------CCCeEEEEEeCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC
Confidence 9999888775 357999999999999999999999999999999999999999999999999998
Q ss_pred ---ccccccccCEEEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCchhhhhhhhhhchhHHHHHhhhhH
Q 019218 163 ---SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVP 239 (344)
Q Consensus 163 ---s~a~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 239 (344)
+++++++||++++..+.+ ....+++. .++++++++. |. ..++|.++ ++.+++...+++.+.+ .
T Consensus 133 ~~ddv~~~l~GG~~~~~~g~g-----~~~~~~~~---~~~~~~vlv~-p~--~~~sT~~a-~~~l~~~~~~~~~~~~--~ 198 (301)
T PRK01212 133 HPDNVAPALLGGLVLALEENG-----VISVKIPV---FDDLKWVVAI-PN--IELSTAEA-RAVLPKQYSLKDAVFN--S 198 (301)
T ss_pred CHHHHHHHHhCCEEEEEECCc-----eEEEEecC---CCCeEEEEEE-CC--CcCCHHHH-HHhCcCcCCHHHHHHH--H
Confidence 567899999988642321 23555542 1455555544 43 24545554 4444443223444444 4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCCCcEEEe
Q 019218 240 KRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRCYEF 319 (344)
Q Consensus 240 ~~~~~l~~al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGpt~~~~~ 319 (344)
.++..++.+|.++|++.+++.+ . +.+|++++ ..+.|.+.++++.+++ .|++ +...||+|||++ ++
T Consensus 199 ~~~~~l~~al~~~d~~~~~~~~-~--~~~~~~~~------~~~~p~~~~i~~~~~~----~Ga~-g~~~SGsGptv~-~l 263 (301)
T PRK01212 199 SRAALLVAALYTGDYELAGRAM-K--DVLHEPYR------AKLIPGFAEVRQAALE----AGAL-GAGISGAGPTVF-AL 263 (301)
T ss_pred HHHHHHHHHHhhCCHHHHHHHh-c--hhheHHhH------HhhCCCHHHHHHHHHH----CCCe-EEEEEchhhhee-EE
Confidence 5678899999999999999986 3 47886543 4467888888887654 6886 667779999998 55
Q ss_pred ecCCc-hHHHHHHHHHh
Q 019218 320 CDLKH-IFVLSILSASA 335 (344)
Q Consensus 320 ~~~~~-~~~~~~l~~~~ 335 (344)
++++. +++.+.|++.+
T Consensus 264 ~~~~~~~~~~~~l~~~~ 280 (301)
T PRK01212 264 CDKEDAEKVADALQKAF 280 (301)
T ss_pred eccccHHHHHHHHHHhh
Confidence 55433 56777776654
No 9
>PLN02451 homoserine kinase
Probab=100.00 E-value=7.6e-33 Score=268.30 Aligned_cols=274 Identities=17% Similarity=0.153 Sum_probs=197.8
Q ss_pred EEEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCC--CCcceEE-ecCcc--cCCC--cchHHH
Q 019218 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPS--FDQDRMW-LNGKE--ISLG--GGRYQN 81 (344)
Q Consensus 9 ~~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~--~~~~~i~-i~g~~--~~~~--~~~~~~ 81 (344)
++++++|+.+||+ +|+||++|+++| +||++++|+..++ ..+.++. +.|.. .+.+ +|.+.+
T Consensus 53 ~~~~~aPA~~ANL-----------GpgfD~lG~a~d--~l~d~v~~~~~~~~~~~~~~i~~~~g~~~~l~~~~~~Nlv~~ 119 (370)
T PLN02451 53 SVKAFAPATVANL-----------GPGFDFLGCAVD--GLGDFVTARVDPGVRPGEVSISEITGDTGRLSKDPLRNCAGI 119 (370)
T ss_pred eEEEEeccchhhc-----------ccChhhhhhhhc--cCcCEEEEEECCCCCcccEEEEEeccccccCCCCcccCcHHH
Confidence 4889999999998 899999999999 5999999998642 0123444 33432 2222 577888
Q ss_pred HHHHHHHHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcc
Q 019218 82 CLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGS 161 (344)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~~~~ 161 (344)
+++.+.+.++.. ..+++|+++++||+++|||||||+++|++.|+|++++.+++++||.++|.++|
T Consensus 120 a~~~~~~~~g~~---------------~~gv~I~i~k~IP~g~GLGSSaA~avA~l~aln~l~g~~ls~~eL~~la~~~E 184 (370)
T PLN02451 120 AAIATMKLLGIR---------------SVGLSLSLHKGLPLGSGLGSSAASAAAAAVAVNELFGSPLGKDDLVLAGLESE 184 (370)
T ss_pred HHHHHHHHcCCC---------------CCCEEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 888888877641 35799999999999999999999999999999999999999999999999988
Q ss_pred Cc--------cccccccCEEEEecccCCCCCCceEEEcCCCCCC-CCceEEEEEECCCCcccCchhhhhhhhhhchhHHH
Q 019218 162 GS--------ACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHW-NDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQH 232 (344)
Q Consensus 162 Gs--------~a~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~-~~l~~~vlv~~~~~~~~~s~~~~~~~~~~~~~~~~ 232 (344)
++ +++|++||+++..... .. ...+++. +. +++++++++ |.. .. +|+.+++.++......+
T Consensus 185 ~~v~g~h~Dnva~a~~GG~v~~~~~~---~~--~~~~~~~--p~~~~~~~Vlv~-P~~--~~-sT~~ar~~lp~~~~~~~ 253 (370)
T PLN02451 185 AKVSGYHADNIAPALMGGFVLIRSYE---PL--HLIPLRF--PSAKDLFFVLVS-PDF--EA-PTKKMRAALPKEIPMKH 253 (370)
T ss_pred chhcCCCccchhHhhcCCEEEEEecC---CC--eEEEeec--CCCCCeEEEEEc-CCC--Cc-cHHHHHHHHhhhcchhh
Confidence 72 3578999998764221 11 1223321 11 345554444 432 33 45555655554322233
Q ss_pred HHhhhhHHHHHHHHHHHHhCCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCC
Q 019218 233 RAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAAL 312 (344)
Q Consensus 233 ~~~~~~~~~~~~l~~al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAG 312 (344)
.+.+ ..++..++.+|.++|++.++++|.+ +.+|+ |++..+.|.+.++++.+.+ .|++ ++..||||
T Consensus 254 ~v~~--~~~~~~l~~al~~~d~~~l~~~m~n--D~~~e------~~r~~~~P~l~~l~~~~~~----~GA~-ga~mSGSG 318 (370)
T PLN02451 254 HVWN--CSQAAALVAAILQGDAVLLGEALSS--DKIVE------PTRAPLIPGMEAVKKAALE----AGAY-GCTISGAG 318 (370)
T ss_pred HHHH--HHHHHHHHHHHHcCCHHHHHHHHHH--HHHhH------HHHhhhCccHHHHHHHHHH----CCCe-EEEEEccc
Confidence 3333 4456789999999999999998765 46785 4555689999999888765 6887 66777999
Q ss_pred CCcEEEeecCC-c-hHHHHHHHHHhhh
Q 019218 313 SGRCYEFCDLK-H-IFVLSILSASARE 337 (344)
Q Consensus 313 pt~~~~~~~~~-~-~~~~~~l~~~~~~ 337 (344)
||++ .+++++ . +++.+.|+..+++
T Consensus 319 ptvf-al~~~~~~a~~i~~~l~~~~~~ 344 (370)
T PLN02451 319 PTAV-AVIDDEEKGEEVGERMVEAFRK 344 (370)
T ss_pred hheE-EEEcCHHHHHHHHHHHHHHHHH
Confidence 9999 555432 3 6788888877654
No 10
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=100.00 E-value=3.2e-32 Score=258.06 Aligned_cols=268 Identities=15% Similarity=0.136 Sum_probs=194.0
Q ss_pred EEEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecCcc---cCC-CcchHHHHHH
Q 019218 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE---ISL-GGGRYQNCLK 84 (344)
Q Consensus 9 ~~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g~~---~~~-~~~~~~~~~~ 84 (344)
++++.|+.|+.| ...|||+|+|| ..+|++++++ ||++++++.++ +.++.+.|.. .+. .++.+.++++
T Consensus 2 ~~~a~aKiNl~L-~i~~kr~dgyH--~l~s~~~ai~---l~d~v~i~~~~---~~~i~~~~~~~~~~~~~~~nl~~~~~~ 72 (300)
T PRK03188 2 TVRAPAKVNLHL-GVGPLRDDGYH--ELATVFQAVS---LYDEVTVTAAD---VLSVEVSGEGADQVPTDESNLAWRAAE 72 (300)
T ss_pred eEeecceEEEee-ccCCcCCCCcc--chHhhheehh---hccEEEEEECC---CcEEEEecCCccCCCCCCccHHHHHHH
Confidence 468999999999 44799999999 6999999999 99999998753 3566776542 222 3677888999
Q ss_pred HHHHHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcc
Q 019218 85 EIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSA 164 (344)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~~~~Gs~ 164 (344)
.+++.++. ..+++|+++++||+++|||||||+++|++.|++++++.+++.++|.++|.+++.++
T Consensus 73 ~~~~~~~~----------------~~~~~I~i~s~IP~~~GLGSSSA~a~A~l~al~~~~g~~ls~~el~~~a~~ig~dv 136 (300)
T PRK03188 73 LLAEHVGR----------------APDVHLHIDKGIPVAGGMAGGSADAAAALVACDALWGLGLSRDELLELAAELGSDV 136 (300)
T ss_pred HHHHHhCC----------------CCCeEEEEEcCCcccCcchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc
Confidence 99888774 35799999999999999999999999999999999999999999999999999888
Q ss_pred ccccccCEEEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCchhhhhhhhhhchhHHHHHhhhhHHHHHH
Q 019218 165 CRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQ 244 (344)
Q Consensus 165 a~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (344)
+++++||+++.. +.++ ...++.. + +++.+++++ |+. .++|+++++. ++..... ....+ ..++..
T Consensus 137 ~~~~~GG~~~~~-~~g~-----~~~~~~~--~-~~~~~~lv~-p~~--~~sT~~~~~~-l~~~~~~-~~~~~--~~~~~~ 200 (300)
T PRK03188 137 PFALLGGTALGT-GRGE-----QLAPVLA--R-GTFHWVLAF-ADG--GLSTPAVFRE-LDRLREA-GDPPR--LGEPDP 200 (300)
T ss_pred chhhcCCeEEEE-ecCC-----EEEECCC--C-CCcEEEEEe-CCC--CCCHHHHHHh-chhhhcc-ccccc--cccHHH
Confidence 899999998754 2211 1333321 1 344444444 432 3455554443 3321110 11122 445788
Q ss_pred HHHHHHhCCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCCCcEEEeecCCc
Q 019218 245 MEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRCYEFCDLKH 324 (344)
Q Consensus 245 l~~al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGpt~~~~~~~~~~ 324 (344)
++.++.++|++.+++.|. | .+. +++..+.|.+.++++.+++ .|++ ++..||+||+++ +++++++
T Consensus 201 ~~~al~~~d~~~l~~~~~-n--~le-------~~~~~~~p~l~~l~~~~~~----~Gal-ga~lSGsG~tv~-~l~~~~~ 264 (300)
T PRK03188 201 LLAALRAGDPAQLAPLLG-N--DLQ-------AAALSLRPSLRRTLRAGEE----AGAL-AGIVSGSGPTCA-FLCADAD 264 (300)
T ss_pred HHHHHHcCCHHHHHHHhh-C--cCH-------HHHHHhCchHHHHHHHHHH----CCCC-EEEEEccccceE-EEeCCHH
Confidence 999999999999999764 3 222 3444567888888888765 6887 666779999987 5655322
Q ss_pred --hHHHHHHHH
Q 019218 325 --IFVLSILSA 333 (344)
Q Consensus 325 --~~~~~~l~~ 333 (344)
+++.+.++.
T Consensus 265 ~~~~~~~~l~~ 275 (300)
T PRK03188 265 SAVDVAAALSG 275 (300)
T ss_pred HHHHHHHHHHh
Confidence 345555544
No 11
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.97 E-value=2.7e-30 Score=241.91 Aligned_cols=261 Identities=15% Similarity=0.075 Sum_probs=190.3
Q ss_pred EEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecCcccCCCcchHHHHHHHHHHH
Q 019218 10 VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIRSR 89 (344)
Q Consensus 10 ~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g~~~~~~~~~~~~~~~~~~~~ 89 (344)
.++.|++|+.| +..|||.++|| ..+|+..+++ +|++++++..+ ..++..++...+...+.+.++++.+++.
T Consensus 4 ~~a~aKiNL~L-~i~~kr~dgyH--~l~s~~~ai~---l~d~v~i~~~~---~~~i~~~~~~~~~~~n~v~~a~~~~~~~ 74 (275)
T PRK14611 4 LLSPAKVNLGL-WILGKRPDGYH--EIFTIYHTID---LYDRIYIKEHH---TLEVKTSSPQIKEEENIVYKALRLFERY 74 (275)
T ss_pred eeecceEEeee-ccCcCCCCCcc--hhhheeEecc---CCcEEEEEECC---cEEEEeCCCCCCCcccHHHHHHHHHHHH
Confidence 57889999999 44799999999 6999999999 99999998643 3456555543333468888999999887
Q ss_pred ccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCccccccc
Q 019218 90 ACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLF 169 (344)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~~~~Gs~a~s~~ 169 (344)
++. ..+++|+++|+||+++|||||||++||++.|++++++.+++.++|.++|.+++++++.+++
T Consensus 75 ~g~----------------~~~~~i~i~k~IP~~~GLGSSsA~aaA~l~al~~~~~~~l~~~~l~~la~~i~~D~~~~~~ 138 (275)
T PRK14611 75 TGI----------------DINYSIFIEKNIPVGAGLGGGSSNAAVVLKYLNELLGNPLSEEELFELASSISADAPFFLK 138 (275)
T ss_pred hCC----------------CCCeEEEEEeCCCCcCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCeeec
Confidence 765 3579999999999999999999999999999999999999999999999999999777889
Q ss_pred cCEEEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCchhhhhhhhhhchhHHHHHhhhhHHHHHHHHHHH
Q 019218 170 GGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAI 249 (344)
Q Consensus 170 GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al 249 (344)
||++++... ++ ...+++. . ++..++++. |. ...+|.+. ++.++. ....+ ......++.++
T Consensus 139 Gg~~~~~~~-g~-----~~~~~~~--~-~~~~~vv~~-p~--~~~sT~~~-~~~l~~-----~~~~~--~~~~~~l~~~l 198 (275)
T PRK14611 139 GGFALGRGI-GD-----KLEFLEK--P-ISREITLVY-PN--IKSSTGRV-YSKVTK-----QILTN--KEDLNIIISLL 198 (275)
T ss_pred CCeEEEecc-Cc-----eeEECCc--C-CCcEEEEEe-CC--CCCChHHH-HHhcch-----hhccC--cchHHHHHHHH
Confidence 999876432 11 1334431 1 233444444 43 23445444 333332 11222 34567789999
Q ss_pred HhCCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCCCcEEEeecCCchHHHH
Q 019218 250 QNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRCYEFCDLKHIFVLS 329 (344)
Q Consensus 250 ~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGpt~~~~~~~~~~~~~~~ 329 (344)
.++|++.+...+. +.||+++. .+.|.+.++.+..+. .| + +.+.||||||++ .+++ +.+.+.+
T Consensus 199 ~~~~~~~~~~~~~---n~l~~~~~-------~~~P~l~~~~~~l~~----~~-~-~~~~SGSG~tvf-~l~~-~~~~~~~ 260 (275)
T PRK14611 199 REGEEKKIEEVIE---NTLGEIAL-------ELYPEIKEVYRFLEY----LG-Y-KPFVSGSGSSVY-VFGK-PSEEVKK 260 (275)
T ss_pred HcCCHHHHHHhcC---CcccHHHH-------HHCHHHHHHHHHHHh----CC-C-CEEEeCccccce-eEeC-CHHHHHH
Confidence 9999999877643 48997664 477888888776433 44 3 456779999999 5553 3355666
Q ss_pred HHHH
Q 019218 330 ILSA 333 (344)
Q Consensus 330 ~l~~ 333 (344)
++..
T Consensus 261 ~~~~ 264 (275)
T PRK14611 261 AAAV 264 (275)
T ss_pred HHhh
Confidence 6554
No 12
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.97 E-value=1.9e-29 Score=237.66 Aligned_cols=267 Identities=15% Similarity=0.117 Sum_probs=185.1
Q ss_pred eEEEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecCcccCC-CcchHHHHHHHH
Q 019218 8 LMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISL-GGGRYQNCLKEI 86 (344)
Q Consensus 8 ~~~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g~~~~~-~~~~~~~~~~~~ 86 (344)
|+++++|+.|+.| ...|||+++|| ..+++..+++ +|++++++..+ ..++..++...+. ..+.+.++++.+
T Consensus 4 ~~~~a~aKiNL~L-~i~~~r~dgyH--~l~si~~~i~---l~d~v~v~~~~---~~~i~~~~~~~p~~~~nl~~~a~~~~ 74 (287)
T PRK14616 4 ISVKAFAKINLGL-LITGKRPDGYH--TLETIFAPIN---WYDTLTFSPSD---TISMSCTNLDLPVDDSNLCIRAAKAL 74 (287)
T ss_pred eEEeeceeEEeee-ecCCCCCCCcc--ceeEEEEEcC---CCCEEEEEECC---CEEEEeCCCCCCCCccHHHHHHHHHH
Confidence 3467899999999 34799999999 6999999999 99999998642 3445444333332 256777888888
Q ss_pred HHHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcccc
Q 019218 87 RSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACR 166 (344)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~~~~Gs~a~ 166 (344)
++.++. ..+++|+++|+||+++|||||||+++|++.|+++++|.+++.+|+.++|.++++|++.
T Consensus 75 ~~~~~~----------------~~~~~I~i~k~IP~~~GLGssSA~aaA~l~al~~l~g~~ls~~el~~~a~~ig~Dvp~ 138 (287)
T PRK14616 75 QEYAGV----------------SKGVSITLDKRVPFGAGLGGGSSDAATVLRVLNELWEINAPSADLHRLAVKLGADVPY 138 (287)
T ss_pred HHHhCC----------------CCCeEEEEEeCCCCcCCchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcce
Confidence 887764 3579999999999999999999999999999999999999999999999999999644
Q ss_pred cc-ccCEEEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCchhhhhhhhhhchhHHHHHhhhhHHHHHHH
Q 019218 167 SL-FGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQM 245 (344)
Q Consensus 167 s~-~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 245 (344)
++ +||++.. .+.++ ....++. . +.+++++++ |. ..++|.+ +++.++.... .+ ...+..+
T Consensus 139 ~l~~gg~~~~-~g~g~-----~~~~~~~--~-~~~~~vvv~-P~--~~vsT~~-a~~~l~~~~~-----~~--~~~~~~l 198 (287)
T PRK14616 139 FLEMKGLAYA-TGIGD-----ELEDLQL--T-LPFHIVTVF-PE--EHISTVW-AYKNFYRRFE-----RE--RPDLKTL 198 (287)
T ss_pred EeccCCcEEE-EEcCc-----eeEECCc--C-CCcEEEEEC-CC--CCcCHHH-HHHHhhhhcc-----cC--CchHHHH
Confidence 44 5898753 33221 1233321 1 234544443 43 3454544 4444443211 11 2344556
Q ss_pred HHHHHh-CCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCCCcEEEeecCC-
Q 019218 246 EEAIQN-HDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRCYEFCDLK- 323 (344)
Q Consensus 246 ~~al~~-~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGpt~~~~~~~~~- 323 (344)
+.++.+ +|++.++. +.+ .+ + |++..+.|.+.++.+.+++ .|++ ++..||||||++ ++++++
T Consensus 199 ~~~l~~~~~~~l~~~-~~n---D~-e------~~~~~l~p~l~~v~~~~~~----~Gal-g~~lSGSGptv~-al~~~~~ 261 (287)
T PRK14616 199 VRRLCLDGDTSVLPA-FEN---DF-E------SAVFDHYPAVRKVKDDLLE----AGSF-FASLSGSGSAVF-GLFENEA 261 (287)
T ss_pred HHHHhcCCHHHHHHH-hcC---cc-H------HHHHHhChHHHHHHHHHHh----CCCC-eEEEecccccce-EEeCCHH
Confidence 776655 67777654 222 22 3 4556688899988888765 7887 777889999998 666542
Q ss_pred c-hHHHHHHHHHhh
Q 019218 324 H-IFVLSILSASAR 336 (344)
Q Consensus 324 ~-~~~~~~l~~~~~ 336 (344)
. +++.+.|++.++
T Consensus 262 ~a~~i~~~l~~~~~ 275 (287)
T PRK14616 262 DAEAAAEMMRARYR 275 (287)
T ss_pred HHHHHHHHhHHhCc
Confidence 2 557777765544
No 13
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.97 E-value=7.6e-30 Score=239.04 Aligned_cols=258 Identities=14% Similarity=0.131 Sum_probs=181.3
Q ss_pred eEEEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecCcccCC-CcchHHHHHHHH
Q 019218 8 LMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISL-GGGRYQNCLKEI 86 (344)
Q Consensus 8 ~~~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g~~~~~-~~~~~~~~~~~~ 86 (344)
|++++.|+.|+.| +..|||.++|| ..||++++++ +|++++|+..++ +.++.+++...+. .++.+.++++.+
T Consensus 3 ~~~~a~aKiNl~L-~i~~~~~dgyH--~l~sl~~al~---l~d~v~i~~~~~--~~~i~~~~~~~p~~~~Nli~ka~~~~ 74 (276)
T PRK14612 3 MERLAPAKVNLGL-SVLGRREDGYH--ELHTLMVPLD---VGDRLEVEPIAS--GLELRVLGADLPTDERNLVYRAARAY 74 (276)
T ss_pred eEEeeCcEEeecc-ccCCCCCCCCc--eeEEEEEECC---CCCEEEEEECCC--cEEEEcCCCCCCCCCcccHHHHHHHH
Confidence 3456777777777 44799999999 6999999999 999999987531 3445555543332 257788898999
Q ss_pred HHHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcccc
Q 019218 87 RSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACR 166 (344)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~~~~Gs~a~ 166 (344)
++.++. ..+++|+++++||+++|||||||++||++.+++++++.+++ +.++|.++++++++
T Consensus 75 ~~~~g~----------------~~~~~I~i~k~IP~~~GLGssSa~aaa~l~al~~l~~~~l~---l~~ia~~~g~dv~~ 135 (276)
T PRK14612 75 LDAAGQ----------------PGGVRITLEKRLPLAAGLGGGSSDAAATLLALAQLYPAPVD---LPALALTLGADVPF 135 (276)
T ss_pred HHHhCC----------------CCCeEEEEEecCCCcCCCchHHHHHHHHHHHHHHHhCCChH---HHHHHHHhCCCcCe
Confidence 888775 35799999999999999999999999999999999998765 67777778889999
Q ss_pred ccccCEEEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCchhhhhhhh-hhchhHHHHHhhhhHHHHHHH
Q 019218 167 SLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESV-ETSLLLQHRAKEVVPKRIVQM 245 (344)
Q Consensus 167 s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l 245 (344)
+++||+++.. +.++ ...+++. +++.+++++ |.. ..+|.+ +++.+ +.. + .. ..++..+
T Consensus 136 ~~~GG~~~~~-g~g~-----~~~~l~~----~~~~~vv~~-P~~--~~sT~~-a~~~l~~~~--~----~~--~~~~~~l 193 (276)
T PRK14612 136 FLLGGAAEAR-GVGE-----RLTPLEL----PPVPLVLVN-PGV--AVSARD-AYRWLEPED--F----GP--ELDVEAI 193 (276)
T ss_pred eeeCCeEEEE-ecCc-----cceEcCC----CCcEEEEEC-CCC--CCCHHH-HHHhhcccc--C----CC--cccHHHH
Confidence 9999998753 2211 1344532 445554444 432 344444 44444 221 1 11 2346788
Q ss_pred HHHHHhCCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCCCcEEEeecCC--
Q 019218 246 EEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRCYEFCDLK-- 323 (344)
Q Consensus 246 ~~al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGpt~~~~~~~~~-- 323 (344)
+.+|.++|...+ .| .| +|++..+.|.+.++.+.+++ .|++ ++..||||||++ .+++++
T Consensus 194 ~~~l~~~d~~~~-----~n--~l-------~~~~~~~~p~l~~i~~~l~~----~Ga~-~~~lSGsGptvf-al~~~~~~ 253 (276)
T PRK14612 194 LAALARGEEPPY-----WN--SL-------EGPVFARHPELQEVLAALRA----AGLR-GVLMSGSGSTCF-GLAEDAAQ 253 (276)
T ss_pred HHHHHhcccccc-----cC--Cc-------HHHHHHhChHHHHHHHHHHh----CCCC-EEEEcCcchhhE-EEeCCHHH
Confidence 889988884332 12 22 35666788899998888754 6887 777889999999 665533
Q ss_pred chHHHHHHHHH
Q 019218 324 HIFVLSILSAS 334 (344)
Q Consensus 324 ~~~~~~~l~~~ 334 (344)
.+++.+.+++.
T Consensus 254 a~~~~~~l~~~ 264 (276)
T PRK14612 254 AQRAAAALRAR 264 (276)
T ss_pred HHHHHHHhHhh
Confidence 25566677654
No 14
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.97 E-value=2.4e-29 Score=237.10 Aligned_cols=261 Identities=14% Similarity=0.100 Sum_probs=178.8
Q ss_pred EEEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecCcc---cCC-CcchHHHHHH
Q 019218 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE---ISL-GGGRYQNCLK 84 (344)
Q Consensus 9 ~~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g~~---~~~-~~~~~~~~~~ 84 (344)
.+++.|+.|+.| +..|||+|+|| ..+|+...++ ||++++|+..+ ...+.+.|.. .+. .++.+.++++
T Consensus 8 ~~~a~aKiNL~L-~i~~kr~dGyH--~l~s~~~~i~---l~D~l~i~~~~---~~~i~~~~~~~~~ip~~~~Nlv~ka~~ 78 (290)
T PRK14608 8 TEFAPAKINLAL-HVTGRRADGYH--LLESLVAFAD---VGDRLTLEPAE---ALSLTVSGPFAAGLGDGDDNLVLRAAR 78 (290)
T ss_pred EEEeceeEEeee-ccCCCCCCCCc--ceeEEEEECC---CCcEEEEEECC---CCcEEEeCCCccCCCCCCCcHHHHHHH
Confidence 366888888888 45799999999 6999999999 99999998654 2335554432 232 2688889999
Q ss_pred HHHHHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcc
Q 019218 85 EIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSA 164 (344)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~~~~Gs~ 164 (344)
.+++.++.. ..+++|+++|+||+++|||||||++||++.++|++++.+++.+|+.++|.++++++
T Consensus 79 ~~~~~~g~~---------------~~~~~i~i~k~IP~~~GLGsssa~aaa~l~~l~~l~~~~ls~~el~~la~~ig~dv 143 (290)
T PRK14608 79 ALRARVGPG---------------LPPGAFHLEKNLPVAAGIGGGSADAAAALRLLARLWGLALDDERLAALALSLGADV 143 (290)
T ss_pred HHHHHhCCC---------------CCceEEEEEeCCcCcCCchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc
Confidence 998877521 35789999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCEEEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCchhhhhhhhhhch--hHHHHHhhhhHHHH
Q 019218 165 CRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSL--LLQHRAKEVVPKRI 242 (344)
Q Consensus 165 a~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~~~~~~~~--~~~~~~~~~~~~~~ 242 (344)
+++++||+++.. +.++ ...+++. +|+++++++. |. .+++|.+ +++.++... .....+.+ ..+.
T Consensus 144 ~~~l~gg~~~~~-g~g~-----~~~~l~~---~~~~~~vv~~-p~--~~~sT~~-~~~~l~~~~~~~~~~~~~~--~~~~ 208 (290)
T PRK14608 144 PVCLDSRPLIMR-GIGE-----ELTPLPG---LPSLPAVLVN-PG--VPVATPD-VFRALGLRDGPPLPGAPDP--LASA 208 (290)
T ss_pred chhhcCCeEEEE-ecCC-----EeEECCC---CCCcEEEEEC-CC--CCcChHH-HHHhhccccCCcchhhhhh--hhhh
Confidence 999999998743 2211 1345531 2556655554 43 3455544 444444221 11111111 1233
Q ss_pred HHHHHHHHhCCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhc-CCceEEEEecCCCCcEEEeec
Q 019218 243 VQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSV-GSPQVCSFFAALSGRCYEFCD 321 (344)
Q Consensus 243 ~~l~~al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~-g~~~~~~~sgAGpt~~~~~~~ 321 (344)
..+..++... . +.|. |++..+.|.+.++.+.+.+ . |++ ++..||||||++ .+++
T Consensus 209 ~~l~~~~~~~----------~--ndle-------~~~~~l~p~l~~i~~~~~~----~~Ga~-~~~lSGSGstvf-~l~~ 263 (290)
T PRK14608 209 DALLAALAAT----------R--NDLE-------PPALALAPVIGEVLAALRA----QPGAL-LARMSGSGATCF-ALFA 263 (290)
T ss_pred hhHHHHHHhc----------c--CccH-------HHHHHcCcHHHHHHHHHHh----cCCCC-eeEEeccccCeE-EEeC
Confidence 3344433321 1 1222 3334578888888888765 6 887 777889999999 5554
Q ss_pred CC--chHHHHHHHH
Q 019218 322 LK--HIFVLSILSA 333 (344)
Q Consensus 322 ~~--~~~~~~~l~~ 333 (344)
++ .+++.+.|+.
T Consensus 264 ~~~~a~~~~~~l~~ 277 (290)
T PRK14608 264 DEAAAEAAAAAIAA 277 (290)
T ss_pred CHHHHHHHHHHhHh
Confidence 32 2456666654
No 15
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.97 E-value=5.3e-29 Score=234.44 Aligned_cols=265 Identities=17% Similarity=0.141 Sum_probs=183.5
Q ss_pred EEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecCcccCC-CcchHHHHHHHHHH
Q 019218 10 VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISL-GGGRYQNCLKEIRS 88 (344)
Q Consensus 10 ~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g~~~~~-~~~~~~~~~~~~~~ 88 (344)
++|.|+.|+.| +..|+|.++|| ..++|.++++ +|++++|+..++ +..++..+....+. ..+.+.++++.+++
T Consensus 5 ~~apakinl~l-~i~g~~~dg~h--~l~si~~ai~---l~~~v~v~~~~~-~~~~i~~~~~~~~~~~~n~~~~~~~~~~~ 77 (286)
T PRK00128 5 EKAPAKINLSL-DVLGKREDGYH--EVEMIMQTID---LADRLEIEKLKE-DGIVVESNNRYVPNDERNLAYKAAKLLKE 77 (286)
T ss_pred EeccceEEEEe-ecCccCCCCcc--eeheeeEecC---CCcEEEEEECCC-CCEEEEeCCCCCCCCCCcHHHHHHHHHHH
Confidence 44555556654 44799999999 5899999999 999999987642 12233332221222 25678888888888
Q ss_pred HccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcccccc
Q 019218 89 RACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSL 168 (344)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~~~~Gs~a~s~ 168 (344)
.++. ..+++|+++++||.++|||||||+++|++.|++++++.+++.+++.++|.+++.++++++
T Consensus 78 ~~~~----------------~~~~~i~i~~~iP~~~GLGSSsa~a~a~~~al~~~~~~~l~~~~l~~~a~~~g~dv~~~~ 141 (286)
T PRK00128 78 RYNI----------------KQGVSITIDKNIPVAAGLAGGSSDAAATLRGLNKLWNLGLSLEELAEIGLEIGSDVPFCI 141 (286)
T ss_pred hcCC----------------CCCeEEEEEcCCCccccchHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCCCCCeEe
Confidence 7664 356899999999999999999999999999999999999999999999999999999999
Q ss_pred ccCEEEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCchhhhhhhhhhchhHHHHHhhhhHHHHHHHHHH
Q 019218 169 FGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEA 248 (344)
Q Consensus 169 ~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 248 (344)
+||+++.. +.++ ...+++. .|+++++++. |. ..++|.+. ++.++.. . .. ...+..++.+
T Consensus 142 ~Gg~~~~~-~~g~-----~~~~~~~---~~~~~~vv~~-p~--~~~~T~~~-~~~~~~~----~-~~---~~~~~~~~~~ 200 (286)
T PRK00128 142 YGGTALAT-GRGE-----KITPLKS---PPSCWVVLAK-PD--IGVSTKDV-YKNLDLD----K-IS---HPDTEKLIEA 200 (286)
T ss_pred eCCeEEEe-cCCc-----ccccCCC---CCCcEEEEEc-CC--CCCCHHHH-HhcCccc----c-cc---CcchHHHHHH
Confidence 99998754 2211 1233321 2456655543 43 24444443 3222211 0 11 3346788999
Q ss_pred HHhCCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCCCcEEEeecCC--chH
Q 019218 249 IQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRCYEFCDLK--HIF 326 (344)
Q Consensus 249 l~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGpt~~~~~~~~~--~~~ 326 (344)
+.++|++.++++|. | .|+.... ...|.+.++++.+++ .|++ ++.+||+||+++ ++++++ .++
T Consensus 201 l~~~d~~~~~~~~~-n--~l~~~~~-------~~~p~l~~l~~~~~~----~Ga~-g~~lSGsG~sv~-~l~~~~~~~~~ 264 (286)
T PRK00128 201 IEEGDYQGICANMG-N--VLENVTL-------KKYPEIAKIKERMLK----FGAD-GALMSGSGPTVF-GLFDDESRAQR 264 (286)
T ss_pred HhcCCHHHHHHhcc-C--cHHHHHH-------hhChHHHHHHHHHHh----cCCC-eeEEcccCccEE-EEeCCHHHHHH
Confidence 99999999999763 3 4543332 345677777777654 6887 677789999998 555432 245
Q ss_pred HHHHHHHH
Q 019218 327 VLSILSAS 334 (344)
Q Consensus 327 ~~~~l~~~ 334 (344)
+.+.++..
T Consensus 265 i~~~l~~~ 272 (286)
T PRK00128 265 IYNGLKGF 272 (286)
T ss_pred HHHHhHhh
Confidence 66666543
No 16
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.97 E-value=6.8e-29 Score=236.52 Aligned_cols=277 Identities=16% Similarity=0.140 Sum_probs=185.7
Q ss_pred EEEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecCcccCC-CcchHHHHHHHHH
Q 019218 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISL-GGGRYQNCLKEIR 87 (344)
Q Consensus 9 ~~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g~~~~~-~~~~~~~~~~~~~ 87 (344)
.+.|.|..|+.| +..|+|.++|| ...++..+++ +|++++|+..++ +...+..+....+. .++.+.++++.++
T Consensus 5 ~~~apakiNL~L-~i~g~~~dGy~--~l~~~~~~i~---l~d~v~v~~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~ 77 (312)
T PRK02534 5 TLIAPAKINLHL-EILGDRPDGFH--ELAMVMQSID---LADRLELRNNGD-GTIRLHCDHPQLSTDDDNLIYRAAQLLR 77 (312)
T ss_pred EEEeceEEEecc-ccCccCCCCCC--ceEEEEEECC---CCCEEEEEECCC-CcEEEEECCCCCCCCchhHHHHHHHHHH
Confidence 345666666666 44699988777 4666667788 999999987642 12223222212222 2567888888888
Q ss_pred HHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCccccc
Q 019218 88 SRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRS 167 (344)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~~~~Gs~a~s 167 (344)
+.++.. ..+++|+++++||.++|||||||+++|++.|++++++.+++.++++++|.+++++++++
T Consensus 78 ~~~~~~---------------~~~~~i~i~~~IP~~~GLGSssa~~~A~~~al~~~~~~~l~~~~l~~~a~~~g~dv~~~ 142 (312)
T PRK02534 78 KRFPFA---------------EGGVDITLEKRIPIGAGLAGGSTDAAAVLVGLNLLWGLGLTQPELESLAAELGSDVPFC 142 (312)
T ss_pred HHhCCC---------------CCCeEEEEecCCCCcCCccHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCcEE
Confidence 877641 24799999999999999999999999999999999999999999999999999999999
Q ss_pred cccCEEEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCchhhhh---hhhhhchhHHH----HHhhhhHH
Q 019218 168 LFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMR---ESVETSLLLQH----RAKEVVPK 240 (344)
Q Consensus 168 ~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~---~~~~~~~~~~~----~~~~~~~~ 240 (344)
++||++++.. .++ ...+++.+ ++++++++++|.. .++|.++++ ..++......+ .+.+ ..
T Consensus 143 ~~GG~~~~~~-~g~-----~~~~~~~~---~~~~~vv~~~p~~--~~~T~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~ 209 (312)
T PRK02534 143 IAGGTQLCFG-RGE-----ILEPLPDL---DGLGVVLAKYPSL--SVSTPWAYKTYRQQFGDTYLSDEEDFEQRRQ--AL 209 (312)
T ss_pred eECCeEEEEC-CCC-----EeEECCCC---CCcEEEEEECCCC--CccHHHHHHHHhhhcccccccCccccccccc--cc
Confidence 9999987542 211 13455321 3455444433432 355544432 22222111111 1111 33
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCCCcEEEee
Q 019218 241 RIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRCYEFC 320 (344)
Q Consensus 241 ~~~~l~~al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGpt~~~~~~ 320 (344)
+...++.+|.++|++.+++. || ++++....|.+.++.+.++.++.+.|++ ++..||+|||++ .++
T Consensus 210 ~~~~l~~al~~~d~~~~~~~-------~~------n~l~~~~~~~~~~i~~~~~~l~~~~Ga~-~~~lSGsGptv~-~l~ 274 (312)
T PRK02534 210 RSGPLLQAISAKDPPPIAQL-------LH------NDLEKVVLPEYPQVAKLLELLSSLPGCL-GTMMSGSGPTCF-ALF 274 (312)
T ss_pred chhHHHHhhhccCHHHHHHh-------hh------CchHHHhHhcChHHHHHHHHHHhccCCC-eeEEECcCcceE-EEe
Confidence 45778999999999998663 45 3333445667777777776554236887 777889999999 666
Q ss_pred cCC-c-hHHHHHHHHHh
Q 019218 321 DLK-H-IFVLSILSASA 335 (344)
Q Consensus 321 ~~~-~-~~~~~~l~~~~ 335 (344)
+++ + +.+.+.++..+
T Consensus 275 ~~~~~a~~~~~~l~~~~ 291 (312)
T PRK02534 275 ESQEQAEQALEQVREAF 291 (312)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 542 2 55667776654
No 17
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.97 E-value=1.2e-28 Score=233.01 Aligned_cols=277 Identities=12% Similarity=0.089 Sum_probs=189.0
Q ss_pred eeEEEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecCcccCCCcchHHHHHHHH
Q 019218 7 VLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEI 86 (344)
Q Consensus 7 ~~~~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g~~~~~~~~~~~~~~~~~ 86 (344)
.+.+++.|+.|+.| ...|||+|+|| ..||++++++ .+|++++++..++ .+.++..++.+.+..+|.+.++++.+
T Consensus 6 ~~~~~apaKINL~L-~v~~kr~DGyH--~l~sl~~~i~--~~~D~l~i~~~~~-~~i~~~~~~~~~~~~~Nlv~~a~~~~ 79 (296)
T PRK14615 6 AVTLRSGCKVNLDL-RITGVRPDGYH--EIDSLFLPLP--EPHDELHVRVTDA-PGITVTCTIPDLDPERNTVTRAYTAF 79 (296)
T ss_pred eEEEEecceEEecc-ccCCcCCCCCc--ceEEEEEECC--CCCcEEEEEECCC-CCEEEEECCCCCCCCccHHHHHHHHH
Confidence 35578999999999 34799999999 6999999998 3699999987642 13445555544433468888999999
Q ss_pred HHHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcccc
Q 019218 87 RSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACR 166 (344)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~~~~Gs~a~ 166 (344)
++.++. ..+++|+++++||.++|||||||+++|++.+++++++.+++.+++.++|.+++++++.
T Consensus 80 ~~~~~~----------------~~~~~i~i~k~IP~~~GLGsgsa~aaa~l~al~~l~~~~l~~~~l~~~a~~~gaDvPf 143 (296)
T PRK14615 80 AAATGF----------------RPPLEVHLRKGIPHGAGLGGGSADAAALLRHLNSIAPHPLSPEALAKLAAGVGADVPF 143 (296)
T ss_pred HHHhCC----------------CCCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCCee
Confidence 988775 3579999999999999999999999999999999999999999999999999999776
Q ss_pred ccccCEEEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCchhhhhhhhhhchhHHHH--HhhhhHHHHHH
Q 019218 167 SLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHR--AKEVVPKRIVQ 244 (344)
Q Consensus 167 s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 244 (344)
+++||.++. .|.++ ...+++. +.|+++++++. |. ..++|.++++. ++.....+.. ..+ ......
T Consensus 144 fl~gg~a~~-~G~Ge-----~~~~l~~--~~~~~~~vl~~-P~--~~vsT~~a~~~-~~~~~~~~~~~~~~~--~~~~~~ 209 (296)
T PRK14615 144 FLHNVPCRA-TGIGE-----ILTPVAL--GLSGWTLVLVC-PE--VQVSTPWAYAA-WDAANAKQIAASSRK--QNRLRG 209 (296)
T ss_pred eccCCCEEE-EeeEe-----EEEECCC--CCCCcEEEEEC-CC--CCcChHHHHHH-hhhhccccccccccc--ccchHH
Confidence 778998753 33221 1344431 12455554443 43 34556665442 2211000000 000 112233
Q ss_pred HHHHHHhCCHHHHHHHHH-HhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCCCcEEEeecC-
Q 019218 245 MEEAIQNHDFSSFAQLTC-ADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRCYEFCDL- 322 (344)
Q Consensus 245 l~~al~~~D~~~l~~~~~-~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGpt~~~~~~~~- 322 (344)
++.....+|...+.+... .| .| +|++..+.|.+.++.+.+.+ .|++ ++..||||||++ .++.+
T Consensus 210 ~l~~~~~~~~~~~~~~~~l~n--dl-------e~~~~~l~P~l~~~~~~~~~----~GAl-ga~mSGSGptvf-aL~~~~ 274 (296)
T PRK14615 210 CLTTEGVADRNPLSRGLWLHN--SF-------EPVVFAAHPELRRLKETLLR----HGAA-AALMSGSGSSVF-GLFRRR 274 (296)
T ss_pred HHHhhhccchhhhhhhhhccc--cc-------hhHhHHhChHHHHHHHHHHh----cCCC-EEEEeccCcceE-EEeCCH
Confidence 445556667666544311 12 33 35566788999999888765 6887 677789999999 55443
Q ss_pred Cc-hHHHHHHHHH
Q 019218 323 KH-IFVLSILSAS 334 (344)
Q Consensus 323 ~~-~~~~~~l~~~ 334 (344)
+. +++.+.|++.
T Consensus 275 ~~a~~i~~~l~~~ 287 (296)
T PRK14615 275 AQAEAAFEMLKGH 287 (296)
T ss_pred HHHHHHHHHHhhh
Confidence 32 4577777654
No 18
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.97 E-value=1.3e-28 Score=232.73 Aligned_cols=272 Identities=12% Similarity=0.118 Sum_probs=185.2
Q ss_pred EEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecCcc----------c----CCCc
Q 019218 11 TAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE----------I----SLGG 76 (344)
Q Consensus 11 ~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g~~----------~----~~~~ 76 (344)
++.|+.|+.| ...|||+|+|| ..+|+...++ ||++++++..+. ...++..+... + +..+
T Consensus 2 ~apAKINL~L-~I~gkr~dGyH--~l~s~~~~i~---l~D~l~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (297)
T PRK14613 2 ISPAKINLGL-EIPFKREDGFH--EIRSVFLKIS---WGDDIEIEPAPN-GVFELFSTNEIILEKRKLYDQVSERGDIKQ 74 (297)
T ss_pred CCCceEeeee-cCCCcCCCCcc--eeeeEEEEec---cCCEEEEEECCC-CcEEEEecccccccccccccccCCCCCccc
Confidence 5779999999 34799999999 6999999999 999999986432 12233322221 1 1236
Q ss_pred chHHHHHHHHHHHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCH-HHHHH
Q 019218 77 GRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQ-SQLSA 155 (344)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~-~el~~ 155 (344)
|.+.++++.+++.++. ..+++|+++|+||+++|||||||++++++.++++.+++ +. ++|.+
T Consensus 75 Nlv~ka~~~~~~~~~~----------------~~~v~I~i~K~IP~~aGLGggSs~Aaa~l~~l~~~~~l--~~~e~L~~ 136 (297)
T PRK14613 75 NILYKTFIKARSLFPE----------------LPGVKIHLTKRISPAGGLGGGSTNAASLLNFLFSWRNF--FTSDEMQV 136 (297)
T ss_pred chHHHHHHHHHHHhCC----------------CCCeEEEEEeCCCccCCccccHHHHHHHHHHHHhcCCC--CcHHHHHH
Confidence 8889999999988765 35799999999999999999999999998888876554 54 67777
Q ss_pred HHHhccCccccccccCEEEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCchhhhhhhhhhch--hHHHH
Q 019218 156 IARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSL--LLQHR 233 (344)
Q Consensus 156 lA~~~~Gs~a~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~~~~~~~~--~~~~~ 233 (344)
+|.+++++ +|+++||.+.+..+.++ ...+++. |..+++ ++.|. ..++|.+++. .+++.. ...+.
T Consensus 137 lA~~lGaD-vP~~l~G~~a~~~g~Ge-----~~~~l~~----~~~~~v-lv~P~--~~vsT~~a~~-~l~~~~~~~~~~~ 202 (297)
T PRK14613 137 FAKEIGSD-VPFFLGEGHAFVTGKGE-----IMEEIEV----HKGQGI-LALTP--QVMNTGEMYA-LLKKPLQESASQK 202 (297)
T ss_pred HHHHhCCc-cchhhcCCeEEEecCCc-----EEEEcCC----CCCeEE-EEECC--CCcChHHHHH-hcchhhccccccc
Confidence 99999887 46666666665444322 2445532 333344 44454 3455555544 444321 01111
Q ss_pred HhhhhHHHHHHHHHHHHhCCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCC
Q 019218 234 AKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALS 313 (344)
Q Consensus 234 ~~~~~~~~~~~l~~al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGp 313 (344)
.. ..+...++.++.++|++.+...++ | .| +|++..+.|.+.++.+.+.+ .|++ ++..|||||
T Consensus 203 ~~---~~~~~~~~~al~~~~~~~l~~~l~-n--dl-------e~~~~~l~P~~~~i~~~~~~----~Ga~-~~~mSGSGp 264 (297)
T PRK14613 203 NG---NTLSEDLISSLKVGDWVSLQGRLE-N--DF-------EPVAFQLHPELGVLKDKFLE----FGSS-YCSLTGSGS 264 (297)
T ss_pred cc---cccHHHHHHHHHcCCHHHHHHHhc-c--cc-------hHHHHHhCcHHHHHHHHHHH----cCCC-EEEEEcccc
Confidence 11 224567889999999998876543 3 33 35566789999999887654 6887 777889999
Q ss_pred CcEEEeecC-Cc-hHHHHHHHHHhhhCCc
Q 019218 314 GRCYEFCDL-KH-IFVLSILSASARENSY 340 (344)
Q Consensus 314 t~~~~~~~~-~~-~~~~~~l~~~~~~~~~ 340 (344)
|++ .++++ +. +++.+.|+..+..-.|
T Consensus 265 tvf-~l~~~~~~a~~~~~~l~~~~~~~~~ 292 (297)
T PRK14613 265 SMY-GLVQGLEIQEELLPRLRQEFSNLTF 292 (297)
T ss_pred ceE-EEeCCHHHHHHHHHHHHHhhccceE
Confidence 999 56554 22 5577777766554443
No 19
>TIGR00144 beta_RFAP_syn beta-RFAP synthase. This protein family contains several archaeal examples of beta-ribofuranosylaminobenzene 5-prime-phosphate synthase (beta-RFAP synthase), an enzyme involved in methanopterin biosynthesis. In some species, two members of this family are found. It is unclear whether both act as beta-RFAP synthase. This family is related to the GHMP kinases (Galactokinase, Homoserine kinase, Mevalonate kinase, Phosphomevalonate kinase). Members are found so far only in the Archaea and in Methylobacterium extorquens.
Probab=99.96 E-value=7.5e-28 Score=229.92 Aligned_cols=274 Identities=14% Similarity=0.145 Sum_probs=183.4
Q ss_pred EEEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecC---cccCC--CcchHHHHH
Q 019218 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNG---KEISL--GGGRYQNCL 83 (344)
Q Consensus 9 ~~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g---~~~~~--~~~~~~~~~ 83 (344)
.|++-+-.+.+|+..-|.. +=.|.++|+||+ .++++++|+.++ ...+.++. ...+. ..+.+.+++
T Consensus 2 ~v~~~~rlH~g~~d~~~~~-----gr~~Gg~G~al~--~~~~~v~v~~~~---~~~v~~~~~~g~~l~~~~~~n~~~~~~ 71 (324)
T TIGR00144 2 IINTPSRIHLTLIDLNGSI-----GRVDGGVGLALE--EPEIVIGLKESD---DMGVEFTSHAEGKLGEEYRRSRIMEAA 71 (324)
T ss_pred eecccccccccccCCCCcc-----CccccceEEEEe--CCcEEEEEEECC---CceEEecccccccccchhHHHHHHHHH
Confidence 4677777888887433321 123889999999 589999998764 33455432 21121 245666777
Q ss_pred HHHHHHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCc
Q 019218 84 KEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGS 163 (344)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~~~~Gs 163 (344)
+.+.+.++. .+++|+++++||.++|||||||+++|++.|+|++++.+++.+||+++|.++++|
T Consensus 72 ~~~~~~~g~-----------------~~~~i~i~~~IP~~~GLGSsaa~avA~~~a~~~l~~~~ls~~el~~~a~~ge~s 134 (324)
T TIGR00144 72 RKTLKHIGS-----------------EGFHFTVRSMFPAHSGLGSGTQLSLAVGRLVSEYYGMKFTAREIAHIVGRGGTS 134 (324)
T ss_pred HHHHHHhCC-----------------CCEEEEEeecCCCccCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCCCCC
Confidence 777766653 368999999999999999999999999999999999999999999999999984
Q ss_pred ---cccccccCEEEEeccc--CCC-----------CCCceEEEcCCCCCCCCceEEEEEECCCCcccCchhhhhh--hhh
Q 019218 164 ---ACRSLFGGFVKWILGK--EGN-----------GSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRE--SVE 225 (344)
Q Consensus 164 ---~a~s~~GG~v~~~~~~--~~~-----------~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~~--~~~ 225 (344)
+++|++||+++. .|+ .+. ....+..+++ +|++++++++ |... .++. .|+ .++
T Consensus 135 ~~~va~~~~GG~vv~-~G~~~~~~~~~~~~~~~~~~~~~~~~r~~----~p~~~~vlvi-P~~~-~t~~---are~~~lp 204 (324)
T TIGR00144 135 GIGVASFEDGGFIVD-GGHSSKEKSDFLPSSASSAKPAPVIARYD----FPDWNIILAI-PEID-SVSG---RREVNIFQ 204 (324)
T ss_pred ccceeeeeeCCEEEE-CCcccccccccCcccccCCCCCCeEEecC----CCCcEEEEEe-cCCC-CCCc---HHHHHHHH
Confidence 689999999874 221 000 0112244443 3666666555 5543 2222 222 244
Q ss_pred hc--hhHHHHHhhhhHHHHHHHHHHHHhCCHHHHHHHHHHhhh-----HHhhhhccCCCCeeeecccHHHHHHHHHHHHh
Q 019218 226 TS--LLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSN-----QFHAVCLDTSPPIFYMNDTSHRIISYVERWNR 298 (344)
Q Consensus 226 ~~--~~~~~~~~~~~~~~~~~l~~al~~~D~~~l~~~~~~d~~-----~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~ 298 (344)
+. ..+++ +.+.++..+.+++++|.++|+++|++.|+ |.. ++| +||+..++|. +++.+.
T Consensus 205 ~~~~i~~~d-v~~~~~~~l~~l~~al~~~d~~~~~~~l~-d~~~~~f~~~~------~~~r~~li~~---~~~~l~---- 269 (324)
T TIGR00144 205 KYCPVPLRD-VERICHLILMKMMPAVVEGDLDAFGESVN-EIQGLGFKKIE------RELQDPLIKR---IIDSMI---- 269 (324)
T ss_pred hcCCCCHHH-HHHHHHHHHHHHHHHHHhcCHHHHHHHHH-HHHhhcchhhh------ccccCHHHHH---HHHHHH----
Confidence 42 23444 45544444466799999999999999874 322 467 4555455543 233322
Q ss_pred hcCCceEEEEecCCCCcEEEeecCCchHHHHHHHHHhhhC
Q 019218 299 SVGSPQVCSFFAALSGRCYEFCDLKHIFVLSILSASAREN 338 (344)
Q Consensus 299 ~~g~~~~~~~sgAGpt~~~~~~~~~~~~~~~~l~~~~~~~ 338 (344)
+++ ++..||+|||++ ++++++.+++.+.+++.++++
T Consensus 270 --~a~-g~~iSGsGPTv~-al~~~~~~~~~~~~~~~~~~~ 305 (324)
T TIGR00144 270 --SAP-GAGMSSFGPTVY-AVTDEKPGNIAGAVADIFGPY 305 (324)
T ss_pred --hcc-CceecCCCCeEE-EEecCchHHHHHHHHHHhhhC
Confidence 124 456779999999 667665567888888776643
No 20
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.96 E-value=5.5e-27 Score=220.07 Aligned_cols=263 Identities=15% Similarity=0.083 Sum_probs=174.1
Q ss_pred eEEEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecCcccCC-CcchHHHHHHHH
Q 019218 8 LMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISL-GGGRYQNCLKEI 86 (344)
Q Consensus 8 ~~~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g~~~~~-~~~~~~~~~~~~ 86 (344)
+.+++.|+.|++| +..|||+|+|| ..+|+-..++ ||++++|+..+. +..++..++...+. .++.+.++++.+
T Consensus 4 ~~~~apaKiNl~L-~i~~~r~dgyH--~l~s~~~~i~---l~d~v~v~~~~~-~~~~i~~~~~~~p~~~~nl~~~a~~~~ 76 (280)
T PRK14614 4 LTLKAPAKVNYRL-DVLRRRPDGYH--DLRMIMQRVD---LCDEIEIALSDG-PGIRVTCGREGVPDGPGNIAWRAADAL 76 (280)
T ss_pred eEEeecceEEeee-ccCCCCCCCcC--hhheEeEECC---CCeEEEEEECCC-CCEEEEeCCCCCCCCCCcHHHHHHHHH
Confidence 3467788888888 55899999999 6999999999 999999987642 12334333322332 367888888988
Q ss_pred HHHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcccc
Q 019218 87 RSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACR 166 (344)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~~~~Gs~a~ 166 (344)
++.++. ..+++|+++++||+++|||||||+++|++.|++++++.+++.+++.++|.++++++++
T Consensus 77 ~~~~~~----------------~~~~~i~i~~~IP~~~GLGsssa~~~a~~~al~~~~~~~l~~~~l~~~a~~~G~Dv~~ 140 (280)
T PRK14614 77 LDLSGR----------------EVGIDISITKNIPVAAGLGGGSSDAATVLMGVNELLGLGLSDERLMEIGVKLGADVPF 140 (280)
T ss_pred HHHhCC----------------CCceEEEEEecCCCcCccHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcce
Confidence 888764 3468999999999999999999999999999999999999999999999999999888
Q ss_pred ccccCEEEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCchhhhhhhhhhchhHHHHHhhhhHHHHHHHH
Q 019218 167 SLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQME 246 (344)
Q Consensus 167 s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 246 (344)
+++||+++.. +.++ ...+++. .++++++++. |. ..++|.+.++.+............+. ...... +
T Consensus 141 ~l~gg~~~~~-g~ge-----~~~~l~~---~~~~~ivl~~-p~--~~~sT~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~ 206 (280)
T PRK14614 141 FIFKKTALAE-GIGD-----KLTAVEG---VPPLWVVLVN-PG--LHVSTAWVYQNLRLTSRKDLAIIPRF-FGSVAE-V 206 (280)
T ss_pred eeeCCcEEEE-EcCc-----eeEECCC---CCCcEEEEEC-CC--CCCCHHHHHhcccccccCcchhhhhh-hhhHHH-H
Confidence 9999997743 2211 1344432 2456655443 43 34556655443211000000001100 001111 1
Q ss_pred HHHHhCCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCCCcEEEeecCCc--
Q 019218 247 EAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRCYEFCDLKH-- 324 (344)
Q Consensus 247 ~al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGpt~~~~~~~~~~-- 324 (344)
.++..+|++.+. .+ ..|.+.++++.+++ .|++ ++.+|||||+++ ++++++.
T Consensus 207 ~~~~~ndle~~~--------------~~-------~~p~l~~i~~~~~~----~Gal-ga~lSGSG~tv~-~l~~~~~~~ 259 (280)
T PRK14614 207 CALLSNDLESVT--------------IG-------RFPVIGEIKEELLA----AGAR-GSLMSGSGSTVF-GLFDDEAAA 259 (280)
T ss_pred hhhcccCcHHHH--------------Hh-------cChHHHHHHHHHHh----CCCC-EEEEeccccceE-EEeCCHHHH
Confidence 234445555431 11 24566777777654 6887 666779999998 6655432
Q ss_pred hHHHHHHHHH
Q 019218 325 IFVLSILSAS 334 (344)
Q Consensus 325 ~~~~~~l~~~ 334 (344)
+.+.+.|++.
T Consensus 260 ~~~~~~l~~~ 269 (280)
T PRK14614 260 RAAAEELSRE 269 (280)
T ss_pred HHHHHHhhhc
Confidence 4466666664
No 21
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase. Members of this family of GHMP kinases were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. It is now known, in tomato and E. coli, to encode 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis.
Probab=99.95 E-value=7.7e-26 Score=213.55 Aligned_cols=269 Identities=15% Similarity=0.111 Sum_probs=180.7
Q ss_pred EEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecCcccCCCcchHHHHHHHHHHH
Q 019218 10 VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIRSR 89 (344)
Q Consensus 10 ~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g~~~~~~~~~~~~~~~~~~~~ 89 (344)
+++.|+.|+.| +..|||+++|| ..+|+..+++ +|++++++..++ +..++..+....+...+.+.++++.+++.
T Consensus 4 ~~apaKiNL~l-~i~~~r~dGyH--~l~sl~~~i~---l~d~v~i~~~~~-~~i~~~~~~~~~~~~~nlv~~a~~~l~~~ 76 (293)
T TIGR00154 4 FPSPAKLNLFL-YITGKRPDGYH--ELQTLMQFLD---LGDKIIISVRSD-DDIRLLKGDFDVPLEENLIYRAAQLLKNF 76 (293)
T ss_pred EeecccEEEEE-ecCCcCCCCCc--ceEEEEEEec---cCcEEEEEECCC-CcEEEeeCCCCCCCCCcHHHHHHHHHHHH
Confidence 57888899988 55799999999 6999999999 999999976542 12233322222232247888899998887
Q ss_pred ccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCccccccc
Q 019218 90 ACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLF 169 (344)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~~~~Gs~a~s~~ 169 (344)
++... ....+++|+++++||.++|||||||+++|++.|++++++.+++.+++.++|.+++++++.+++
T Consensus 77 ~~~~~------------~~~~~~~i~i~~~iP~~aGLGsssa~aaa~l~al~~~~~~~l~~~~l~~la~~lg~Dv~~~~~ 144 (293)
T TIGR00154 77 ANSKI------------KSLDGANIEIDKNIPMGAGLGGGSSDAATVLVGLNQLWQLGLSLEELAELGLTLGADVPFFVS 144 (293)
T ss_pred hcccc------------cCCCCeEEEEeccCCCCCCcchhHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcceEEE
Confidence 76310 003468999999999999999999999999999999999999999999999999999999999
Q ss_pred cCEEEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCchhhhhhhhhhchhHHHHHhhhhHHHHHHHHHHH
Q 019218 170 GGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAI 249 (344)
Q Consensus 170 GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al 249 (344)
||+++.. +.++ ...+++. .++++++++. |. ..++|.+.++ .++.. + . . ......++.++
T Consensus 145 gg~~~~~-g~ge-----~~~~l~~---~~~~~~vl~~-p~--~~~sT~~~~~-~l~~~---~--~-~--~~~~~~l~~~~ 203 (293)
T TIGR00154 145 GHAAFAT-GVGE-----IITPFED---PPEKWVVIAK-PH--VSISTPVVYQ-AYKLP---R--N-T--PKRAKEWLKKI 203 (293)
T ss_pred CCeEEEE-ecCc-----EEEECCC---CCCcEEEEEc-CC--CCcChHHHHH-hhhhc---c--c-C--cchhHHHHHHH
Confidence 9998753 2211 1344532 2455554443 43 3455555433 32200 0 0 1 22334466777
Q ss_pred HhCCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCCCcEEEeecCCc--hHH
Q 019218 250 QNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRCYEFCDLKH--IFV 327 (344)
Q Consensus 250 ~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGpt~~~~~~~~~~--~~~ 327 (344)
..++++.+...+. +.|..+.. ...|...++++.+++ .|++ ++..||+||+++ .+++++. +++
T Consensus 204 ~~~~~~~~~~~~~---ndle~~~~-------~~~p~l~~i~~~l~~----~Ga~-~a~mSGSG~tvf-~l~~~~~~a~~~ 267 (293)
T TIGR00154 204 SLECLQLLDSNGL---NDLEKVAL-------KRHTEVAQALNWLLE----YGLA-PERLSGSGACVF-ALFDMESEAEQV 267 (293)
T ss_pred hhccHHHHhhhhc---CccHHHHH-------hcCHHHHHHHHHHHh----CCCC-eEEEeccccceE-EEeCCHHHHHHH
Confidence 7777766544322 23333332 245666777666544 6887 667779999998 5554332 446
Q ss_pred HHHHHHH
Q 019218 328 LSILSAS 334 (344)
Q Consensus 328 ~~~l~~~ 334 (344)
.+.+++.
T Consensus 268 ~~~~~~~ 274 (293)
T TIGR00154 268 LEQAPEW 274 (293)
T ss_pred HHHhHHH
Confidence 6655544
No 22
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.95 E-value=2.4e-25 Score=207.89 Aligned_cols=260 Identities=12% Similarity=0.092 Sum_probs=169.6
Q ss_pred CccccceeEEEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecCcc--cCCCcch
Q 019218 1 MAAEKWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE--ISLGGGR 78 (344)
Q Consensus 1 ~~~~~~~~~~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g~~--~~~~~~~ 78 (344)
|+.+.. +.+++.|++|+.| ...|||+|+|| ..+|+..+++ +|++++++..++ ..+.+.+.. .+...+.
T Consensus 1 ~~~~~~-~~~~apaKiNL~L-~v~~~r~dGyH--~l~s~~~~i~---l~D~v~i~~~~~---~~~~i~~~~~~~~~~~N~ 70 (271)
T PRK00343 1 MMNTML-LDWPAPAKLNLFL-HITGRRADGYH--ELQTLFQFLD---WGDTLHFEVRDD---GEIRLLTPIPGVPEEDNL 70 (271)
T ss_pred CCccce-EEEeeeeeEEEEe-ecCCcCCCCCC--eeeEEEEEcc---cceEEEEEECCC---CcEEEeCCCCCCCCcccH
Confidence 344433 3467999999999 45799999999 6999999999 999999987542 235554331 2223678
Q ss_pred HHHHHHHHHHHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 019218 79 YQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIAR 158 (344)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~ 158 (344)
+.++++.+++.++. ..+++|+++++||+++|||||||+++|++.|++++++.+++.++|.++|.
T Consensus 71 v~~a~~~l~~~~~~----------------~~~~~i~i~k~IP~gaGLGssSs~aaa~l~al~~l~~~~ls~~el~~la~ 134 (271)
T PRK00343 71 IVRAARLLQKATGT----------------PLGADISLDKRLPMGGGLGGGSSDAATTLVALNRLWQLGLSRDELAELGL 134 (271)
T ss_pred HHHHHHHHHHHhCC----------------CCCeEEEEEcCCCCcCCCCcchHHHHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 88899999887765 35799999999999999999999999999999999999999999999999
Q ss_pred hccCccccccccCEEEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCchhhhhhhhhhchhHHHHHhhhh
Q 019218 159 QGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVV 238 (344)
Q Consensus 159 ~~~Gs~a~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 238 (344)
++++++ |++++|.+++..+.++ ...+++. |..+++++ .|. ..++|.+++++. ... +. ..
T Consensus 135 ~igaDv-p~~l~g~~~~~~g~g~-----~~~~l~~----~~~~~vl~-~p~--~~~sT~~~~~~~-~~~---~~-~~--- 193 (271)
T PRK00343 135 KLGADV-PVFVRGHAAFAEGIGE-----ILTPVDL----PEKWYLVV-KPG--VHISTAEIFSDP-DLT---RD-TP--- 193 (271)
T ss_pred HhCCCc-eEEecCCcEEEEecCC-----EEEECCC----CCcEEEEE-eCC--CCcChHHHHhhh-hhc---cC-CC---
Confidence 999886 5555554454443222 2445542 44455444 443 345566554421 100 00 00
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCCCcEEE
Q 019218 239 PKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRCYE 318 (344)
Q Consensus 239 ~~~~~~l~~al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGpt~~~~ 318 (344)
......++.....+|++.. .. .+.|...++.+...+ .|+ +..||+|||++ .
T Consensus 194 ~~~~~~~~~~~~~Ndle~~--------------~~-------~~~P~~~~~~~~l~~----~ga---~~mSGSG~tvF-~ 244 (271)
T PRK00343 194 KISIADFLAGPFRNDCEPV--------------VR-------KRYPEVAQALSWLLE----YAP---SRMTGTGACVF-A 244 (271)
T ss_pred hhhHHHHHhccccCCHHHH--------------HH-------HhChHHHHHHHHHHh----CCC---eEEeccccceE-E
Confidence 1111122222222333333 32 245666777666543 565 55779999999 5
Q ss_pred eecCCc--hHHHHHHHHHhh
Q 019218 319 FCDLKH--IFVLSILSASAR 336 (344)
Q Consensus 319 ~~~~~~--~~~~~~l~~~~~ 336 (344)
+++++. +++.+.|+..+.
T Consensus 245 l~~~~~~a~~~~~~l~~~~~ 264 (271)
T PRK00343 245 EFDTEAEAEQVLAQLPEWLQ 264 (271)
T ss_pred EcCCHHHHHHHHHHhhhhcc
Confidence 554332 456666665543
No 23
>PTZ00298 mevalonate kinase; Provisional
Probab=99.95 E-value=1.4e-25 Score=215.07 Aligned_cols=283 Identities=11% Similarity=0.099 Sum_probs=187.0
Q ss_pred EEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecCcccCC----CcchHHHHHHH
Q 019218 10 VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISL----GGGRYQNCLKE 85 (344)
Q Consensus 10 ~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g~~~~~----~~~~~~~~~~~ 85 (344)
.+.+||.-+.| .|.|-..|..| +|..+++ ++++++|+..+..+...+..+....+. .++.+.++++.
T Consensus 11 ~~~~~~~kvil---~GEHaVvyg~~---aI~~~I~---~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~a~~~ 81 (328)
T PTZ00298 11 GKHIGYGKVIL---FGEHFVVYGAE---AIVAGID---EYTECRLELTKGVPGLQVVDQRPAVPGYIVEKREEQRKAHQL 81 (328)
T ss_pred cCCCcCeeEEE---EecceeecCCc---hhhhecc---cceEEEEEEccCCCCceeccccccccchHHHhHHHHHHHHHH
Confidence 68899999988 59999999876 9999999 888888886541111122222211111 14666778888
Q ss_pred HHHHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccC---
Q 019218 86 IRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSG--- 162 (344)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~~~~G--- 162 (344)
+.+.++.. ....+++|+++++||+++|||||||+++|++.|++++++.+++.+||.++|.++|+
T Consensus 82 ~~~~~~~~-------------~~~~g~~I~I~~~IP~gaGLGSSsA~avA~l~al~~l~~~~ls~~el~~~a~~~E~~~~ 148 (328)
T PTZ00298 82 VLRHLNID-------------TSVDGLKMHLGGPLVPSSGIGASASDVVSLSRALSELYQLNLTEEEVNLSAFVGEGGYH 148 (328)
T ss_pred HHHHHhcc-------------cCCCCeEEEEECCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhc
Confidence 88777641 01247999999999999999999999999999999999999999999999976442
Q ss_pred ------ccccccccCEEEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCchhhhhhhhh---hch-hHHH
Q 019218 163 ------SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVE---TSL-LLQH 232 (344)
Q Consensus 163 ------s~a~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~~~~~---~~~-~~~~ 232 (344)
+.+.+++||++.+....+ . ....+++. . ++++++++. |. ...+|.+.++.+.. ..+ .++.
T Consensus 149 g~~sG~D~~~~~~Gg~~~~~~~~g---~-~~~~~l~~--~-~~~~lvv~~-~~--~~~sT~~~~~~v~~~~~~~p~~~~~ 218 (328)
T PTZ00298 149 GTPSGADNTAATYGGLISYRRVNG---K-SVFKRIAF--Q-QPLYLVVCS-TG--ITASTTKVVGDVRKLKENQPTWFNR 218 (328)
T ss_pred CCCChHHHHHHHcCCeEEEecCCC---c-cceeEecC--C-CCCeEEEEE-CC--CchhHHHHHHHHHHHHhcCHHHHHH
Confidence 346689999987653321 1 12344432 1 345544443 32 23445444332211 111 1122
Q ss_pred HHhhhhHHHHHHHHHHHHhCCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCC
Q 019218 233 RAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAAL 312 (344)
Q Consensus 233 ~~~~~~~~~~~~l~~al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAG 312 (344)
...+ ...++..++.+|.++|++.++++|+.|++.|..+.. ..|.+.++++.+++ .|++ ++.+||||
T Consensus 219 ~~~~-~~~~~~~~~~al~~~d~~~lg~~m~~~~~~l~~~~v--------~~p~l~~l~~~~~~----~Ga~-gaklSGsG 284 (328)
T PTZ00298 219 LLEN-YNACVSEAKEALQKGNLFRVGELMNANHDLCQKLTV--------SCRELDSIVQTCRT----YGAL-GAKMSGTG 284 (328)
T ss_pred HHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC--------CcHHHHHHHHHHHh----CCCc-eeEeccCC
Confidence 2222 245678889999999999999998877665543322 56666777776554 6887 55666999
Q ss_pred CCcEE-EeecC-Cc-hHHHHHHHHHhhhC
Q 019218 313 SGRCY-EFCDL-KH-IFVLSILSASAREN 338 (344)
Q Consensus 313 pt~~~-~~~~~-~~-~~~~~~l~~~~~~~ 338 (344)
|++|+ +++++ +. +++.+.|++.+.+.
T Consensus 285 ~GG~v~al~~~~~~a~~~~~~l~~~~~~~ 313 (328)
T PTZ00298 285 RGGLVVALAASEDQRDAIAKAVRARCPEA 313 (328)
T ss_pred CCeEEEEEecchhhHHHHHHHHHHHhhhc
Confidence 98653 35443 32 55777887765543
No 24
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.95 E-value=2.4e-25 Score=207.67 Aligned_cols=144 Identities=15% Similarity=0.151 Sum_probs=122.0
Q ss_pred eEEEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecCcccCC--CcchHHHHHHH
Q 019218 8 LMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISL--GGGRYQNCLKE 85 (344)
Q Consensus 8 ~~~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g~~~~~--~~~~~~~~~~~ 85 (344)
|.++|.|+.|+.| ...|||+++|| ..+|+...++ ||++++++..++ ...++.++|...+. .++.+.++++.
T Consensus 1 ~~~~apaKiNL~L-~v~~~r~dGyH--~l~s~~~~i~---l~D~l~i~~~~~-~~~~~~~~~~~~~~~~~~Nlv~~a~~~ 73 (269)
T PRK14609 1 MITFPNAKINLGL-NVVEKRPDGYH--NLETVFYPIP---LTDALEITVRSA-TKTSLTVSGIPIPGDPEDNLVVKAYNL 73 (269)
T ss_pred CCcCccccEEeee-ccCCcCCCCcc--eeeEEEEECC---CCcEEEEEEcCC-CcEEEEeCCCCCCCCccccHHHHHHHH
Confidence 5678999999999 44799999999 6999999999 999999986543 23566668765542 26788899999
Q ss_pred HHHHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCccc
Q 019218 86 IRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSAC 165 (344)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~~~~Gs~a 165 (344)
+++.++. .+++|+++++||+++|||||||+++|++.|++++++.+++.+++.++|.+++.+++
T Consensus 74 ~~~~~~~-----------------~~~~i~i~k~IP~~aGLGssss~aaa~l~al~~~~~~~l~~~~l~~la~~iGaDvp 136 (269)
T PRK14609 74 LKKDFPL-----------------PPVHIHLYKHIPIGAGLGGGSSDAAFMLKLLNDKFNLGLSDEELEAYAATLGADCA 136 (269)
T ss_pred HHHHcCC-----------------CCeEEEEecCCCCCCcccHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCce
Confidence 8887653 36899999999999999999999999999999999999999999999999988776
Q ss_pred cccccCEEEE
Q 019218 166 RSLFGGFVKW 175 (344)
Q Consensus 166 ~s~~GG~v~~ 175 (344)
.+++||.+..
T Consensus 137 ffl~g~~a~~ 146 (269)
T PRK14609 137 FFIRNKPVYA 146 (269)
T ss_pred EEccCCCEEE
Confidence 6778888664
No 25
>PRK03926 mevalonate kinase; Provisional
Probab=99.94 E-value=3.5e-25 Score=209.96 Aligned_cols=266 Identities=17% Similarity=0.168 Sum_probs=174.5
Q ss_pred EEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecCcccCCCcchHHHHHHHHHHH
Q 019218 10 VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIRSR 89 (344)
Q Consensus 10 ~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g~~~~~~~~~~~~~~~~~~~~ 89 (344)
++++||.-|-|+ |.+.+.| |.++|+++++ +|++++++..++ ...+.....+.+..+..+.++++.+++.
T Consensus 2 ~~~~aPgkv~L~---Geh~~~~---g~~~l~~aI~---~~~~v~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 70 (302)
T PRK03926 2 VLCSAPGKIYLF---GEHAVVY---GKPAIACAID---LRTYVRAEFNDD--SIYIESDYGKTGEKHPYVSAAIEKMREE 70 (302)
T ss_pred eEEeeeeEEEEE---ecceeec---CCeEEEEEec---ceEEEEEEECCC--ceEEecccccccchhHHHHHHHHHHHHh
Confidence 677888888885 8787777 4679999999 999999976531 2223222211122234577788777776
Q ss_pred ccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccC-------
Q 019218 90 ACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSG------- 162 (344)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~~~~G------- 162 (344)
++. .+++|+++++||+++|||||||+++|++.|++++++.+++.+++.++|.++|.
T Consensus 71 ~~~-----------------~g~~i~i~~~iP~~~GLGSSsA~~~a~~~al~~~~~~~l~~~~l~~la~~~E~~~~G~~s 133 (302)
T PRK03926 71 ADK-----------------DGVTVSITSQIPVGSGLGSSAAVTVATIGALNRLLGLGLSLEEIAKLGHKVELLVQGAAS 133 (302)
T ss_pred cCC-----------------CCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcCCCc
Confidence 543 36899999999999999999999999999999999999999999999976632
Q ss_pred --ccccccccCEEEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCchhhhhhhhh---hch-hHHHHHhh
Q 019218 163 --SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVE---TSL-LLQHRAKE 236 (344)
Q Consensus 163 --s~a~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~~~~~---~~~-~~~~~~~~ 236 (344)
++++++|||++++.... +++. ++++++++ .|. .+.+|.+.+..+.. ..+ .++.....
T Consensus 134 g~D~~~~~~Gg~~~~~~~~----------~l~~----~~~~~vl~-~~~--~~~sT~~~~~~~~~~~~~~~~~~~~~~~~ 196 (302)
T PRK03926 134 PTDTYVSTMGGFVTIPDRK----------KLPF----PECGIVVG-YTG--SSGSTKELVANVRKLKEEYPELIEPILSS 196 (302)
T ss_pred hHHHHHHhcCCeEEEcCCC----------cCCC----CCceEEEE-ECC--CCCcHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 34788999998764320 2321 44444443 332 34444443332211 111 11112221
Q ss_pred hhHHHHHHHHHHHHhCCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCCCcE
Q 019218 237 VVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRC 316 (344)
Q Consensus 237 ~~~~~~~~l~~al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGpt~~ 316 (344)
.......+..++.++|++.|+++|+.|+..+..+ -...|.+.++++.+.+ .|++ ++..|||||+.+
T Consensus 197 -~~~~~~~~~~al~~~d~~~l~~~~~~~~~~~~~~--------~~~~p~l~~l~~~~~~----~ga~-ga~lSGaG~Gg~ 262 (302)
T PRK03926 197 -IGKISEKGEELILSGDYVSLGELMNINQGLLDAL--------GVSTKELSELIYAART----AGAL-GAKITGAGGGGC 262 (302)
T ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHh----CCCc-eeeeccCCCCCE
Confidence 1334456678899999999999997776543321 2356777777777654 6887 556779999554
Q ss_pred E-EeecCCc-hHHHHHHHHH
Q 019218 317 Y-EFCDLKH-IFVLSILSAS 334 (344)
Q Consensus 317 ~-~~~~~~~-~~~~~~l~~~ 334 (344)
+ .++++++ +++.+.+++.
T Consensus 263 v~~l~~~~~~~~~~~~~~~~ 282 (302)
T PRK03926 263 MVALAAPEKQSEVATAIKIA 282 (302)
T ss_pred EEEEeccccHHHHHHHHHhc
Confidence 3 4555443 5566666553
No 26
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.94 E-value=8.8e-26 Score=212.07 Aligned_cols=264 Identities=14% Similarity=0.119 Sum_probs=177.9
Q ss_pred eEEEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecCcc-cCCCcchHHHHHHHH
Q 019218 8 LMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE-ISLGGGRYQNCLKEI 86 (344)
Q Consensus 8 ~~~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g~~-~~~~~~~~~~~~~~~ 86 (344)
|.++|.|+.|+.| ...|||+++|| ..+|+.++++ +|++++++..++ ...+.+.+.. .+..+|.+.++++.+
T Consensus 4 ~~~~apAKINL~L-~v~g~r~dGyH--~l~s~~~~i~---l~D~l~i~~~~~--~~~~~~~~~~~~~~~~Nlv~kA~~~l 75 (283)
T PRK14610 4 FLVKAPAKINLFL-HIVGKSESGYH--LLESLFVFVN---LYDFLEIKIGSK--NRGVEFVNSLKINRYNNTVQRAIGLL 75 (283)
T ss_pred eEEeecceEEeee-ccCCcCCCCcc--hhheeeEEcC---CCCEEEEEECCC--CCeEEEeCCCCCCCCCcHHHHHHHHH
Confidence 5588999999999 44799999999 6999999999 999999987541 1246665432 233368889999999
Q ss_pred HHHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcccc
Q 019218 87 RSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACR 166 (344)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~~~~Gs~a~ 166 (344)
++.++. ..+++|+++|+||+++|||||||+++|++.++|++++ ++.+||.++|.++..+++.
T Consensus 76 ~~~~~~----------------~~g~~i~i~K~IP~~aGLGggSs~aaa~L~~ln~l~~--ls~~~l~~ia~~lGaDvPf 137 (283)
T PRK14610 76 LRHSPV----------------RTNVYVKVIKNIPVSAGLAGGSADAAAVIRLLGKLWG--IDEQILNELALSVGSDVPA 137 (283)
T ss_pred HHHhCC----------------CCCeEEEEEcCCCCCCcCCccHHHHHHHHHHHHHHhC--CCHHHHHHHHHHhCCCCcE
Confidence 988775 3579999999999999999999999999999999996 7999999999999889988
Q ss_pred ccccCEEEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCchhhhhhhhhhchhHHHHHhhhhHHHHHHHH
Q 019218 167 SLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQME 246 (344)
Q Consensus 167 s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 246 (344)
+++||.+. ..|.++ ...++++ .....+ ++++.|.. ..++|.++++.+ +... +..... .
T Consensus 138 fl~g~~a~-~~G~Ge-----~l~~l~~--~~~~~~-~vl~~p~~-~~~sT~~vy~~~-~~~~-~~~~~~--------~-- 195 (283)
T PRK14610 138 CLDSKTLF-VRGIGE-----DILLLPD--LSLPTY-VVLVAPKG-KFLSTRKVFNKY-ECKA-FSEPID--------N-- 195 (283)
T ss_pred EEECCeEE-EEeccc-----EEEECcc--cCCCCe-EEEEECCC-CccChHHHHHhh-cccc-cCCccc--------c--
Confidence 99999974 344432 1444431 011223 44444532 356787777643 1100 000000 0
Q ss_pred HHHHhCCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCCCcEEEeecC-Cc-
Q 019218 247 EAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRCYEFCDL-KH- 324 (344)
Q Consensus 247 ~al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGpt~~~~~~~~-~~- 324 (344)
..+.++++..+...+ ++.|. |++..+.|...++.+..++ ..|++ +++.||||||++ .++.+ +.
T Consensus 196 ~~~~~~~~~~~~~~~---~Ndle-------~~~~~l~P~l~~~~~~l~~---~~ga~-~a~mSGSGsTvf-~l~~~~~~a 260 (283)
T PRK14610 196 LPVAQDDLLELLKEA---RNDLL-------ETAISLVPEIEEILFVLES---LEGCI-LSRMSGSGATCF-ALFEEEEAA 260 (283)
T ss_pred cccchhHHHHHHHHh---cCchH-------HHHHHhChHHHHHHHHHHh---cCCCc-eEEEeCccccee-EEeCCHHHH
Confidence 012233333322222 22444 3444577888888886543 24776 777889999999 55433 22
Q ss_pred hHHHHHHHHH
Q 019218 325 IFVLSILSAS 334 (344)
Q Consensus 325 ~~~~~~l~~~ 334 (344)
+++.+.++..
T Consensus 261 ~~~~~~l~~~ 270 (283)
T PRK14610 261 EAAARYLKMT 270 (283)
T ss_pred HHHHHHhhhh
Confidence 4566666543
No 27
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.93 E-value=6.6e-25 Score=204.97 Aligned_cols=177 Identities=12% Similarity=0.133 Sum_probs=134.8
Q ss_pred eEEEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecCcc-cCCCcchHHHHHHHH
Q 019218 8 LMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE-ISLGGGRYQNCLKEI 86 (344)
Q Consensus 8 ~~~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g~~-~~~~~~~~~~~~~~~ 86 (344)
|.+++.|+.|+.| ...|||+|+|| ..+|+...++ +|++++++..+ ...+.+.+.+ .+..++.+.++++.+
T Consensus 1 ~~~~apAKINL~L-~V~gkR~DGYH--~l~sl~~~i~---l~D~l~i~~~~---~~~i~i~~~~~~~~~~Nlv~ra~~~l 71 (288)
T PRK00650 1 MHFFSPAKLNLFL-QLLGKREDGFH--EIVTRYQAIA---FGDQLSLSISS---RDSLQVINACHLETPSNSIWKSVALF 71 (288)
T ss_pred CCccccceEEeee-ccCCcCCCCCc--ceeEEEEEcC---CCCEEEEEECC---CCcEEEeCCCCCCccccHHHHHHHHH
Confidence 4567899999999 44899999999 6999999999 99999998653 2234443222 222468899999999
Q ss_pred HHHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcccc
Q 019218 87 RSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACR 166 (344)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~~~~Gs~a~ 166 (344)
++.++. ..+++|+++|+||+++|||||||+++|++.++|++++.+++.+||.++|.+++++++.
T Consensus 72 ~~~~g~----------------~~~v~I~i~K~IP~gaGLGggSS~aAa~L~~ln~l~~~~ls~~eL~~lA~~lGaDvPf 135 (288)
T PRK00650 72 RRYTGI----------------TTPVSWRVVKQIPIGAGLAGGSSNAATALFALNQIFQTGLSDEELRSLAEKIGMDTPF 135 (288)
T ss_pred HHHhCC----------------CCCeEEEEeeCCCCcCCcCcchhHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCcchh
Confidence 998875 3579999999999999999999999999999999999999999999999999999866
Q ss_pred ccccCEEEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCchhhhh
Q 019218 167 SLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMR 221 (344)
Q Consensus 167 s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~ 221 (344)
++.||+++. .|.++ ....++. .+++++++++ |. ..++|.++++
T Consensus 136 fl~~g~a~~-~G~Ge-----~l~~~~~---~~~~~~vlv~-P~--~~vsT~~ay~ 178 (288)
T PRK00650 136 FFSTGSALG-VGRGE-----KIIALEE---SVSDRYVLYF-SS--EGVLTSRAFA 178 (288)
T ss_pred hhcCceEEE-EecCC-----EEEECcC---CCCceEEEEe-CC--CCCChHHHHH
Confidence 777788654 33222 1344431 2446655554 54 3465655543
No 28
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism]
Probab=99.93 E-value=9.7e-25 Score=201.99 Aligned_cols=262 Identities=16% Similarity=0.129 Sum_probs=183.2
Q ss_pred eEEEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecCc---ccCCCcchHHHHHH
Q 019218 8 LMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGK---EISLGGGRYQNCLK 84 (344)
Q Consensus 8 ~~~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g~---~~~~~~~~~~~~~~ 84 (344)
+++++.|+.|+.| ...|||+|+|| ..+|+...++ ++++.+++..+ .+.+.+.|. .++.+.+.+.++.+
T Consensus 4 ~~~~apAKiNL~L-~V~gkr~DGYH--el~sl~~~id---~~D~l~i~~~~---~~~~~~~~~~~~~lp~~~NLv~rAa~ 74 (289)
T COG1947 4 TKFPAPAKINLFL-HVTGKRADGYH--ELETLFQFID---LGDELTIRPRD---DDGFIVLGTFADGLPTDENLVYRAAE 74 (289)
T ss_pred eEeeccceEEEEE-EecccCCCCce--eeEEEEEEec---cCCEEEEEECC---CCCceEecCCCCCCCCcchHHHHHHH
Confidence 4577888888888 44799999999 5999999999 99999998874 234444443 23333488999999
Q ss_pred HHHHHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcc
Q 019218 85 EIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSA 164 (344)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~~~~Gs~ 164 (344)
.+++.++. ..+++|+++|+||+++|||++||.++|++.++|++++..++.+||..++.++..++
T Consensus 75 ll~~~~~~----------------~~~v~I~l~K~IPv~aGLGGGSSdAAa~L~~Ln~lw~~~ls~~eL~~Lg~~LGaDV 138 (289)
T COG1947 75 LLRKRTGI----------------AGGVSIHLDKNIPVGAGLGGGSSDAAAVLVALNELWGLGLSLEELAELGLRLGADV 138 (289)
T ss_pred HHHHHhCC----------------CCCeeEEEEecCcccCcCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCc
Confidence 99999885 46799999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCEEEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCchhhhhhhhhhchhHHHHHhhhhHHHHHH
Q 019218 165 CRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQ 244 (344)
Q Consensus 165 a~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (344)
+.|++||.... .|.++ ..++++ +.|..|++++. |. ..++|.++++ . +... .+ ......
T Consensus 139 Pffl~g~tA~a-~G~GE-----~l~~~~---~~~~~~~vl~~-P~--v~vsT~~vy~-~-~~~~------~~--~~~~~~ 196 (289)
T COG1947 139 PFFLSGGTAFA-EGRGE-----KLEPLE---DPPEKWYVLAK-PG--VGVSTKEVYK-D-PELT------RN--TPKSEP 196 (289)
T ss_pred CeeeeCCceEE-EEccc-----eeeECC---CCCCceEEEEe-CC--CCCChHHHHc-C-cCcc------cc--cCCchh
Confidence 99999998764 33322 244554 23555655443 42 4577777665 1 1110 11 223345
Q ss_pred HHHHHHhCCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCCCcEEEeecCCc
Q 019218 245 MEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRCYEFCDLKH 324 (344)
Q Consensus 245 l~~al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGpt~~~~~~~~~~ 324 (344)
+..++...++..+.+.. +|.|.++.++.+| ++.+.-..++ +.|+. ..+.||+|||++ .+++.+.
T Consensus 197 ~~~~~~~~~~~~~~~~~---~NdLe~~~~~~~p----------~v~~~~~~l~-~~ga~-~~~mSGSGstvF-~l~~~~~ 260 (289)
T COG1947 197 LIAALSLENLKQIAPFL---INDLEKVALRLYP----------EVKEALSELL-EYGAL-PARMSGSGSTVF-ALFDTEK 260 (289)
T ss_pred hhHHHhhhhHhhhcccc---ccchHHHHHHhCh----------HHHHHHHHHh-hcccc-cceEecCCCcEE-EEeCChH
Confidence 55556666665554432 2467777776533 3333222333 35765 677779999998 5544332
Q ss_pred --hHHHHHHH
Q 019218 325 --IFVLSILS 332 (344)
Q Consensus 325 --~~~~~~l~ 332 (344)
+.+.+.+.
T Consensus 261 ~a~~~~~~l~ 270 (289)
T COG1947 261 EAQRVAEQLP 270 (289)
T ss_pred HHHHHHHHhh
Confidence 44555554
No 29
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism]
Probab=99.93 E-value=1e-23 Score=198.14 Aligned_cols=255 Identities=18% Similarity=0.229 Sum_probs=176.4
Q ss_pred EEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecCcc--cC-C----CcchHHHHH
Q 019218 11 TAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE--IS-L----GGGRYQNCL 83 (344)
Q Consensus 11 ~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g~~--~~-~----~~~~~~~~~ 83 (344)
.++||.-+-| .|.|...|. ..+|.++++ +|.+++++.++ +.++.++... .. . ....+..++
T Consensus 2 ~~~aPgKliL---~GEHAVVyG---~pAI~~aI~---~~~~v~~~~s~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~v 69 (307)
T COG1577 2 SVSAPGKLIL---FGEHAVVYG---YPAIAAAID---LRVTVTISESD---SNKIVIESSDLKSSTLERDEDEGYIQAAV 69 (307)
T ss_pred cccccccEEE---EecceeeeC---Cchhheeee---eeEEEEEEecC---CCcEEEeccCCCCccccccccchHHHHHH
Confidence 4677777766 599999994 669999999 89999998774 3345553321 11 1 123455577
Q ss_pred HHHHHHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHhc---
Q 019218 84 KEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQG--- 160 (344)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~~~--- 160 (344)
+.+.+.... .+..+++++++++||+++|||||||+++|++.|++++||.+++++++.++|.+.
T Consensus 70 ~~~~e~~~~--------------~~~~~~~l~I~S~iP~g~GLGSSAAVsva~i~al~~~~g~~ls~~~l~~la~~~e~~ 135 (307)
T COG1577 70 RLASELLNQ--------------SSLKPFSLEIDSEIPIGAGLGSSAAVSVAVIKALSAYFGVELSPEELAKLANKVELI 135 (307)
T ss_pred HHHHHHhcc--------------cCCCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 777666542 014578999999999999999999999999999999999999999999999644
Q ss_pred ---cC---ccccccccCEEEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCchhhhhhhhh---h-chhH
Q 019218 161 ---SG---SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVE---T-SLLL 230 (344)
Q Consensus 161 ---~G---s~a~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~~~~~---~-~~~~ 230 (344)
.+ +.+-|+|||++.+..+.. ..++.. +... .+++.+.+ ...+|++..+.+.. . ...+
T Consensus 136 vqG~~Sg~D~a~~~~gg~v~~~~~~~-------~~~l~~----~~~~-~~~I~~tg-~~~sT~e~V~~V~~l~~~~~~~~ 202 (307)
T COG1577 136 VQGKASGIDIATITYGGLVAFKKGFD-------FEKLEI----ELLG-TLVIGDTG-VPGSTKELVAGVAKLLEEEPEVI 202 (307)
T ss_pred HcCCCCcccceEEEeCCEEEEecCCC-------cccccc----ccCC-eEEEEEcC-CcCcHHHHHHHHHHHHHhhhHHH
Confidence 22 346688999998865321 223321 1122 23333433 33444433222211 1 2234
Q ss_pred HHHHhhhhHHHHHHHHHHHHhCCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEec
Q 019218 231 QHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFA 310 (344)
Q Consensus 231 ~~~~~~~~~~~~~~l~~al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sg 310 (344)
+..+.. +...+..+..+|.++|++.|+++|+.||.+|-+++.++ .+|.++++..+ +.|+.+++.| |
T Consensus 203 ~~~~~~-ig~~~~~a~~al~~~d~e~lgelm~~nq~LL~~LgVs~-----------~~L~~lv~~a~-~~Ga~gaKlT-G 268 (307)
T COG1577 203 DPILDA-IGELVQEAEAALQTGDFEELGELMNINQGLLKALGVST-----------PELDELVEAAR-SLGALGAKLT-G 268 (307)
T ss_pred HHHHHH-HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCcCc-----------HHHHHHHHHHH-hcCccccccc-c
Confidence 444544 47788999999999999999999999999999999854 45555555555 3788756666 9
Q ss_pred CCCCcEEE
Q 019218 311 ALSGRCYE 318 (344)
Q Consensus 311 AGpt~~~~ 318 (344)
||.+.|++
T Consensus 269 AGgGGc~I 276 (307)
T COG1577 269 AGGGGCII 276 (307)
T ss_pred CCCCceEE
Confidence 99999954
No 30
>PRK01123 shikimate kinase; Provisional
Probab=99.91 E-value=1.1e-22 Score=191.17 Aligned_cols=227 Identities=14% Similarity=0.099 Sum_probs=148.2
Q ss_pred EEEeCCCCceeEEEEEEcCCCCcceEEecCcc--cC-CCcchHHHHHHHHHHHccccccccccccccccccccccEEEEE
Q 019218 40 SVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE--IS-LGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIAS 116 (344)
Q Consensus 40 glal~~~~l~~~~~v~~~~~~~~~~i~i~g~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~ 116 (344)
+++|| +|++++|+..++ .+.+.|+. .+ ...+.+.++++.+++.++. ..+++|++
T Consensus 24 ~~~i~---l~~~v~v~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----------------~~~~~i~i 80 (282)
T PRK01123 24 AFGID---LKTTATVELSDD----GGGIEGEISGNPDADTRLIERCVELVLERFGI----------------DYGATVRT 80 (282)
T ss_pred EEEec---cEEEEEEEECCC----CceeeecccCCCCCCchHHHHHHHHHHHHhCC----------------CCCEEEEE
Confidence 46999 999999987542 23333332 11 2256788888888887765 35799999
Q ss_pred eeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHhc--------cC---ccccccccCEEEEecccCCCCCC
Q 019218 117 FNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQG--------SG---SACRSLFGGFVKWILGKEGNGSD 185 (344)
Q Consensus 117 ~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~~~--------~G---s~a~s~~GG~v~~~~~~~~~~~~ 185 (344)
+++||.++|||||||+++|++.|++++++.+++.++|.++|.++ +| ++++|+|||+++++... .
T Consensus 81 ~s~IP~~~GLGSSaA~~va~~~a~~~~~~~~l~~~el~~la~~~e~~~~~~~~g~~~d~~~~~~GG~~~~~~~~-----~ 155 (282)
T PRK01123 81 KSEIPLASGLKSSSAAANATVLATLDALGEDLDDLDILRLGVKASRDAGVTVTGAFDDACASYFGGVTVTDNRE-----M 155 (282)
T ss_pred ecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhccccccccCchhHHHHHHhCCEEEEcCCC-----c
Confidence 99999999999999999999999999999999999999999874 45 45889999998764321 1
Q ss_pred ceEEEcCCCCCCCCceEEEEEECCCCcccCchhhhhhh-hhhchhHHHHHhhhhHHHHHHHHHHHHhCCHHHHHHHHHHh
Q 019218 186 SLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRES-VETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCAD 264 (344)
Q Consensus 186 ~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~al~~~D~~~l~~~~~~d 264 (344)
....+++ +++.+++++ |.. +.+|.+ .+.. +++. ....+.+...+.++|+. ++|+.|
T Consensus 156 ~~~~~~~-----~~~~~vv~~-p~~--~~~T~~-~r~~~l~~~-----------~~~~d~~~~~~~~~~l~---~~~~~~ 212 (282)
T PRK01123 156 KLLKRDE-----VELDVLVLI-PPE--GAFSAS-ADVERMKLI-----------APYVDMAFELALDGEYF---KAMTLN 212 (282)
T ss_pred eEEEEec-----CCcEEEEEE-CCC--Ccchhh-hhhhhchhc-----------CcHHHHHHHHHhhccHH---HHHHhC
Confidence 2233443 235666655 442 233322 3322 1321 11223334444567775 444444
Q ss_pred hhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCCCcEEEeecCC-chHHHHHHHHH
Q 019218 265 SNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRCYEFCDLK-HIFVLSILSAS 334 (344)
Q Consensus 265 ~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGpt~~~~~~~~~-~~~~~~~l~~~ 334 (344)
+ + +++..+.|.. +++..+. +.|++ ++.+||+||+++ ++++++ .+++.++|+..
T Consensus 213 ~-l---------~~~~~l~~~~-~~i~~a~----~~Ga~-ga~lSGaGptv~-al~~~~~~~~v~~~l~~~ 266 (282)
T PRK01123 213 G-L---------LYSSALGFPT-EPALEAL----EAGAV-GVGLSGTGPSYV-AIVDEEDPEEVKEAWEKY 266 (282)
T ss_pred C-c---------hhhhhhCCCh-HHHHHHH----HCCCe-EEEEecCCCeEE-EEeCCCCHHHHHHHHHhC
Confidence 1 1 2333466664 3344332 37888 667779999998 566544 47788888774
No 31
>TIGR00549 mevalon_kin mevalonate kinase. Paracoccus exhibits two genes within the phosphomevalonate/mevalonate kinase family, one of which falls between trusted and noise cutoffs of this model. The degree of divergence is high, but if the trees created from this model are correct, the proper names of these genes have been swapped.
Probab=99.90 E-value=9.2e-22 Score=183.82 Aligned_cols=245 Identities=19% Similarity=0.221 Sum_probs=156.9
Q ss_pred cccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecCcccC-----CCcchHHHHHHHHHHHccccccccc
Q 019218 24 WGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEIS-----LGGGRYQNCLKEIRSRACDVEDTEK 98 (344)
Q Consensus 24 ~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (344)
.|.|-+.|. ...|.+|+| .|+.+.+...++ ...+..+..... ........+++...+.++..
T Consensus 8 ~GEH~v~~g---~~al~~aI~---~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~----- 74 (273)
T TIGR00549 8 FGEHAVVYG---EPAIAAPIP---LRTTVTVIESSD--GSFIESDLGRGSLDDAPQELDGLVSYIAEALSYFSEL----- 74 (273)
T ss_pred EecChhccC---CCeeEEEec---ccEEEEEEEcCC--CceEeccccCCcHhHhhHHHHHHHHHHHHHHHHhhcc-----
Confidence 587877775 459999999 788887765432 222332222100 00111222333333333321
Q ss_pred cccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcc--------C-ccccccc
Q 019218 99 GIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGS--------G-SACRSLF 169 (344)
Q Consensus 99 ~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~~~~--------G-s~a~s~~ 169 (344)
...+++|+++++||.++|||||||.++|++.|++++++.+++++++.++|.++| | +.++|+|
T Consensus 75 ---------~~~~~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~l~~~a~~~E~~~~G~~sG~D~~~~~~ 145 (273)
T TIGR00549 75 ---------NPPPLEIEIDSEIPPGRGLGSSAAVAVALIRALADYFGSELSKEELAKLANEAEKIAHGKPSGIDTATSTY 145 (273)
T ss_pred ---------CCCCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCchHhHHHHhc
Confidence 012389999999999999999999999999999999999999999999998764 3 3467899
Q ss_pred cCEEEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCchhhhhhh---hhhch-hHHHHHhhhhHHHHHHH
Q 019218 170 GGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRES---VETSL-LLQHRAKEVVPKRIVQM 245 (344)
Q Consensus 170 GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~l 245 (344)
||++.++.+.. ...+.. + ++++++++ ..+ .+.+|.+..+.+ ....+ .++...++ ...++..+
T Consensus 146 Gg~~~~~~~~~-------~~~~~~--~-~~~~lvl~--~tg-~~~~T~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~ 211 (273)
T TIGR00549 146 GGPVYFEKGEG-------EFTKLI--S-LDGYFVIA--DTG-VSGSTKEAVARVRQLLERFPELIDSIMDA-IGELTLEA 211 (273)
T ss_pred CCeEEEEcCCC-------ceeecc--C-CCeEEEEE--ECC-CCCcHHHHHHHHHHHHHhCHHHHHHHHHH-HHHHHHHH
Confidence 99998764321 112211 1 23443333 333 334444443322 11111 22333333 35677889
Q ss_pred HHHHHhCCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCCCcEE
Q 019218 246 EEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRCY 317 (344)
Q Consensus 246 ~~al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGpt~~~ 317 (344)
+.+|.++|++.|+++|+.++..||++.. .+|.+.++++.+++ .|++ ++-+||||+++|+
T Consensus 212 ~~al~~~d~~~lg~l~~~~~~~l~~~~v--------s~p~l~~l~~~~~~----~Ga~-gaklsGaG~GG~~ 270 (273)
T TIGR00549 212 KAALQDGDVESLGELMNINQGLLKALGV--------SHPKLDQLVETARK----AGAL-GAKLTGAGGGGCM 270 (273)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCC--------CcHHHHHHHHHHHH----CCCc-eeeeccCCCCceE
Confidence 9999999999999999999889987544 35566666666554 6887 5555599999994
No 32
>PRK05905 hypothetical protein; Provisional
Probab=99.90 E-value=5.6e-22 Score=182.85 Aligned_cols=178 Identities=14% Similarity=0.105 Sum_probs=134.1
Q ss_pred eEEEEEecceeEeeeeccccc-CCCCCCCCCeeEEEe-CCCCceeEEEEEEcCCCCcceEEecCc--ccCCCcchHH-HH
Q 019218 8 LMVTAQTPTNIAVIKYWGKRD-ETLILPVNDSISVTL-DPDHLCTTTTVAVSPSFDQDRMWLNGK--EISLGGGRYQ-NC 82 (344)
Q Consensus 8 ~~~~~~a~~nial~ky~Gk~d-~~~~~P~~dsiglal-~~~~l~~~~~v~~~~~~~~~~i~i~g~--~~~~~~~~~~-~~ 82 (344)
|+++|.|+.|+.| ...|||+ ++|| ..+|+...+ + ||++.+++..++ ....+.+.+. ......+.+. ++
T Consensus 1 ~~~~apAKINL~L-~I~gkR~DdGYH--el~sv~~~i~~---l~D~l~i~~~~~-~~~~i~~~~~~~~~~~~~nli~~ka 73 (258)
T PRK05905 1 MKYKSYAKINLGL-SIYKKCKKVTKH--KLESIFILVEN---VYDDIEIEKIEK-NIDDIHYFDETNEILVYSRLILVKT 73 (258)
T ss_pred CcccccceEEeee-eecccCCCCCCc--ceeEEEEEccc---cccEEEEEECCC-CCceEEEeCCCcCCCCCcchHHHHH
Confidence 6788999999999 4479999 4999 699999999 8 999999986532 1124555332 1111246666 89
Q ss_pred HHHHHHHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccC
Q 019218 83 LKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSG 162 (344)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~~~~G 162 (344)
++.+++.++. .++++|+++|+||+++|||||||+++|++.++|++++ ++.++|.++|.++..
T Consensus 74 ~~~l~~~~~~----------------~~~~~i~l~K~IP~~aGLGggSSDAAa~L~~Ln~l~~--ls~~~L~~ia~~lGA 135 (258)
T PRK05905 74 LEWLRDKYNI----------------KNHFKIKIKKRIPIGSGLGSGSSNAAVLMKWILEFEG--INEINYKDVVNKLGS 135 (258)
T ss_pred HHHHHHHhCC----------------CCCeEEEEEeCCCCcCCCCCCchHHHHHHHHHHHHhC--CCHHHHHHHHHHhCC
Confidence 9999988775 3579999999999999999999999999999999997 789999999999999
Q ss_pred cccccccc-CEEEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCchhhhhh
Q 019218 163 SACRSLFG-GFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRE 222 (344)
Q Consensus 163 s~a~s~~G-G~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~~ 222 (344)
+++.+++| |..+. .|.++ ..++++. .+..+ ++++.|. ..++|.+++++
T Consensus 136 DVPFfl~g~~~a~~-~G~GE-----~l~pl~~---~~~~~-~vlv~P~--~~vST~~vY~~ 184 (258)
T PRK05905 136 DIPFFLSGYKTAYI-SDYGS-----QVEDLIG---QFKLT-YKVIFMN--VNVSTKKVFEK 184 (258)
T ss_pred CcceEEeCCccEEE-EeeCc-----eeEECCC---CCCce-EEEECCC--CCCCHHHHHHh
Confidence 99999999 78653 44332 2445531 12334 4444443 46778887764
No 33
>TIGR01920 Shik_kin_archae shikimate kinase. This model represents the shikimate kinase (SK) gene found in archaea which is only distantly related to homoserine kinase (thrB) and not atr all to the bacterial SK enzyme. The SK from M. janaschii has been overexpressed in E. coli and characterized. SK catalyzes the fifth step of the biosynthesis of chorismate from D-erythrose-4-phosphate and phosphoenolpyruvate.
Probab=99.90 E-value=1.4e-21 Score=181.62 Aligned_cols=224 Identities=13% Similarity=0.064 Sum_probs=145.4
Q ss_pred EEEeCCCCceeEEEEEEcCCCCcceEEecCcccCCCcchHHHHHHHHHHHccccccccccccccccccccccEEEEEeeC
Q 019218 40 SVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNN 119 (344)
Q Consensus 40 glal~~~~l~~~~~v~~~~~~~~~~i~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~ 119 (344)
.++++ ++++++|+..+ +..+.+... .. .+.+.++++.+++.++. ..+++|+++++
T Consensus 18 a~aI~---~~~~v~v~~~~---~~~~~~~~~--~~-~n~i~~~~~~~~~~~~~----------------~~g~~i~i~s~ 72 (261)
T TIGR01920 18 AFGID---LWVEAKVREGD---EAGVSTYVR--GN-PRLIERILTAIRSKFGI----------------VDGLEVEVESE 72 (261)
T ss_pred EEEcc---CceEEEEEECC---CCceeeeec--CC-hHHHHHHHHHHHHhcCC----------------CCCEEEEEecC
Confidence 46777 88888887764 223333211 11 36778888888887764 35789999999
Q ss_pred CCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcc--------C---ccccccccCEEEEecccCCCCCCceE
Q 019218 120 FPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGS--------G---SACRSLFGGFVKWILGKEGNGSDSLA 188 (344)
Q Consensus 120 IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~~~~--------G---s~a~s~~GG~v~~~~~~~~~~~~~~~ 188 (344)
||.++|||||||+++|++.|++++++.+++.+++.+++.+++ | +.++|+|||+++.+... ..+.
T Consensus 73 iP~~~GLGSSaA~~~a~~~al~~~~~~~l~~~~l~~la~~~e~~~~~~~~~~~~D~~~~~~gG~~~~~~~~-----~~~~ 147 (261)
T TIGR01920 73 IPAGSGLKSSSALVNALVEAVLKAKGVEIDDIDILRLGARLSKDAGLSVTGAFDDAAASYLGGIVITDNRR-----MKIL 147 (261)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHhCCEEEEeCCC-----ceEE
Confidence 999999999999999999999999999999999999998743 3 24678999998754321 1122
Q ss_pred EEcCCCCCCCCceEEEEEECCCCcccCchhhhhhhhhhchhHHHHHhhhhHHHHHHHHHHHHhCCHHHHHHHHHHhhhHH
Q 019218 189 VQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQF 268 (344)
Q Consensus 189 ~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~D~~~l~~~~~~d~~~l 268 (344)
.+++ .|++++++++ |.. ..++....+..++.. ....+.+..+++.+|+. ++|+.|+.++
T Consensus 148 ~~~~----~~~~~~vv~~-p~~--~~tt~~~~~~~l~~~-----------~~~~~~~~~~~~~~~l~---~am~~n~~l~ 206 (261)
T TIGR01920 148 KRDK----LEGCTAAVLV-PKE--GERRENVDLNRFRRI-----------SPVVEEAFNLALRGEYL---KAMVLNGVAY 206 (261)
T ss_pred EecC----CCCceEEEEE-CCC--CcccccccHHHhhhc-----------chHHHHHHHHHhhCCHH---HHHhhChHHh
Confidence 2332 2445555554 443 222222223222211 34556666777888876 5566776543
Q ss_pred -hhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCCCcEEEeecCCchHHHHHHHH
Q 019218 269 -HAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRCYEFCDLKHIFVLSILSA 333 (344)
Q Consensus 269 -h~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGpt~~~~~~~~~~~~~~~~l~~ 333 (344)
-.++. . .++++.+ + +.|++ ++++||+||+++ +++++. +++.++|+.
T Consensus 207 ~~~lg~-----------~-~~~i~~a---~-~~Gal-ga~lSGaG~sv~-aL~~~~-~~v~~~~~~ 253 (261)
T TIGR01920 207 ATALGY-----------P-LEPASKA---L-EAGAA-AAGLSGKGPSYF-ALTEDP-EEAAEALME 253 (261)
T ss_pred HHhhCC-----------C-hHHHHHH---H-HcCCc-EEeecCCCCeEE-EEeCCH-HHHHHHHHh
Confidence 11111 1 1244333 3 37998 777779999998 666544 667777765
No 34
>PRK03817 galactokinase; Provisional
Probab=99.89 E-value=6.4e-21 Score=184.56 Aligned_cols=279 Identities=13% Similarity=0.109 Sum_probs=167.1
Q ss_pred EEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecCcc---------cCCC---cch
Q 019218 11 TAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE---------ISLG---GGR 78 (344)
Q Consensus 11 ~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g~~---------~~~~---~~~ 78 (344)
+++||.-+-| .|.+-+-+. ++ .|++|+| .|+.++++..+ ..++...+-. .... .+.
T Consensus 2 ~~~APgrv~L---~Geh~d~~~--g~-~l~~aI~---~~~~v~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (351)
T PRK03817 2 KVKSPGRVNL---IGEHTDYND--GY-VLPFAIN---LYTFLEIEKSE---KFIFYSENFNEEKTFELDKLEKLNSWADY 69 (351)
T ss_pred EEEeeeeEEE---eccceeeCC--Ce-EEEEEec---CcEEEEEEeCC---eEEEEECCCCCcEEEeCCccCCCCchHHH
Confidence 4677888877 477766444 44 9999999 78888776542 2223222110 0010 123
Q ss_pred HHHHHHHHHHHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 019218 79 YQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIAR 158 (344)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~ 158 (344)
+..++..+++. +. ...+++|+++++||.++|||||||+++|++.|++++++.+++++++.++|.
T Consensus 70 ~~~~~~~~~~~-~~---------------~~~~~~i~i~s~iP~~~GLgSSaa~~va~~~al~~~~~~~~~~~~l~~~a~ 133 (351)
T PRK03817 70 IKGVIWVLEKR-GY---------------EVGGVKGKVSSNLPIGAGLSSSASLEVAVAYALNEAYNLNLSKLELALLAR 133 (351)
T ss_pred HHHHHHHHHHc-CC---------------CCCCeEEEEeCCCCCCCCcCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 44444444332 21 135789999999999999999999999999999999999999999999999
Q ss_pred hccCcc---ccccccCEEEEecccCC----CCCCceEEEcCCCCCCCCceEEEEEECCCCcccCch------hhh---hh
Q 019218 159 QGSGSA---CRSLFGGFVKWILGKEG----NGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSST------TGM---RE 222 (344)
Q Consensus 159 ~~~Gs~---a~s~~GG~v~~~~~~~~----~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~------~~~---~~ 222 (344)
++|.+. +..++++++....+.+. +..+....+++.+ +++.++++.+.. ...++++ ... ++
T Consensus 134 ~~E~~~~g~~~g~~D~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~vv~~sg~-~~~~~~~~~~~~~~~~~~~~~ 209 (351)
T PRK03817 134 EAENEFVGVPCGIMDQFAVAFGKKDHAIFLDTMTLEYEYVPFP---EDYEILVFDTGV-KRELASSEYNERRQECEEALK 209 (351)
T ss_pred HhcccccCCCCcCchhhheeeccCCEEEEEecCCCceEEEecC---CCcEEEEEeCCC-ccccccchhHHHHHHHHHHHH
Confidence 998752 22233333221110000 0001112233211 345555544322 1222211 100 11
Q ss_pred hhhh-------c-------h----hHHHHHhhhhHHHHHHHHHHHHhCCHHHHHHHHHHhhhHHhhhhccCCCCeeeecc
Q 019218 223 SVET-------S-------L----LLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMND 284 (344)
Q Consensus 223 ~~~~-------~-------~----~~~~~~~~~~~~~~~~l~~al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p 284 (344)
.++. . + .....+.+ .+++..++.+|.++|++.|+++|+.+++.||+. ++. -+|
T Consensus 210 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~v~e--~~r~~~~~~al~~~d~~~lg~l~~~s~~~l~~~------~~~-s~p 280 (351)
T PRK03817 210 ILGKKSSKEVTEEDLSKLPPLLRKRAGYVLRE--NERVLKVRDALKEGDIETLGELLTESHWDLADN------YEV-SCE 280 (351)
T ss_pred HhCccchhcCCHHHHHhCCHHHHHHHHHHHHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh------cCC-CcH
Confidence 1110 0 0 01112333 456889999999999999999999988899953 333 477
Q ss_pred cHHHHHHHHHHHHhhcCCceEEEEecCC--CCcEEEeecCCc-hHHHHHHHHHhh
Q 019218 285 TSHRIISYVERWNRSVGSPQVCSFFAAL--SGRCYEFCDLKH-IFVLSILSASAR 336 (344)
Q Consensus 285 ~~~~l~~~v~~~~~~~g~~~~~~~sgAG--pt~~~~~~~~~~-~~~~~~l~~~~~ 336 (344)
.+.++++.+.+ .|++ ++-+|||| |+++ ++++++. +++.+.+++.+.
T Consensus 281 ~ld~l~~~a~~----~Gal-GaklsGaG~Gg~vl-al~~~~~~~~~~~~l~~~~~ 329 (351)
T PRK03817 281 ELDFFVEFALE----LGAY-GARLTGAGFGGSAI-ALVDKGKFESIGEELLEEYK 329 (351)
T ss_pred HHHHHHHHHHH----cCCC-EEEEecCCCCeEEE-EEEchHHHHHHHHHHHHHHH
Confidence 77888887765 6898 55555999 6666 4555443 667777776653
No 35
>TIGR00131 gal_kin galactokinase. The galactokinases found by this model are divided into two sets. Prokaryotic forms are generally shorter. The eukaryotic forms are longer because of additional central regions and in some cases are known to be bifunctional, with regulatory activities that are independent of galactokinase activity.
Probab=99.89 E-value=5.4e-21 Score=187.29 Aligned_cols=276 Identities=17% Similarity=0.198 Sum_probs=173.6
Q ss_pred EEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEe---cCcc--------cCCC---
Q 019218 10 VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWL---NGKE--------ISLG--- 75 (344)
Q Consensus 10 ~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i---~g~~--------~~~~--- 75 (344)
+.++||.-+.| .|.+-+ |+ +++.|++|++ +++++.+...++ ..+.+ +... .+..
T Consensus 18 ~~~~APgrv~L---~GeH~d-y~--g~~vl~~AI~---~~~~v~~~~~~~---~~i~i~~~~~~~~~~~~~~~~~~~~~~ 85 (386)
T TIGR00131 18 FTARAPGRVNL---IGEHTD-YN--DGSVLPCAID---FGTLCAVAVRDD---KNVRIYLANADNKFAERSLDLPLDGSE 85 (386)
T ss_pred EEEECCcceEe---ecccee-eC--CceEEeeEee---ccEEEEEEECCC---CeEEEEECCCCCcceEEECCCCCCCCC
Confidence 67899999999 587776 44 6889999999 899988877643 22332 1110 0110
Q ss_pred ----cchHHHHHHHHHHHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHH
Q 019218 76 ----GGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQS 151 (344)
Q Consensus 76 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~ 151 (344)
.+.+..++..+.+.... ...+++|.+.++||+++|||||||..+|++.|++++++.+++++
T Consensus 86 ~~~w~~y~~~~~~~~~~~~~~---------------~~~g~~i~i~s~iP~gsGLgSSAA~~vA~~~al~~~~~~~~~~~ 150 (386)
T TIGR00131 86 VSDWANYFKGVLHVAQERFNS---------------FPLGADIVCSGNVPTGSGLSSSAAFECAVGAVLQNMGHLPLDSK 150 (386)
T ss_pred CCCcHhHHHHHHHHHHHhcCC---------------CCCceEEEEECCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCHH
Confidence 13445666666654332 13479999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCc----------cccccccC---EEEEecccCCCCCCceEEEcCCCCCCC--CceEEEEEECCCCcccCc
Q 019218 152 QLSAIARQGSGS----------ACRSLFGG---FVKWILGKEGNGSDSLAVQLVDEEHWN--DLVIIIAVVSSRQKETSS 216 (344)
Q Consensus 152 el~~lA~~~~Gs----------~a~s~~GG---~v~~~~~~~~~~~~~~~~~l~~~~~~~--~l~~~vlv~~~~~~~~~s 216 (344)
+++++|..+|.. -..|.+|| +++.+... ....+++ +| ++.++++.+.....+..+
T Consensus 151 ~l~~~a~~~E~~~~G~~~g~~Dq~~s~~G~~~~~l~~~~~~------~~~~~~~----~~~~~~~lvv~~s~~~~~t~~~ 220 (386)
T TIGR00131 151 QILLRIQVAENHFVGVNCGIMDQAASVLGKEDHALLVECRS------LKATPFK----FPQLGIAFVIANTNVKRTLAPS 220 (386)
T ss_pred HHHHHHHHHhcCccCCCcchHHHHHHHhccCCcEEEEEcCC------Cceeeec----CCCCCeEEEEEeCCCccccccc
Confidence 999999877531 25578998 34433221 0123333 23 455444432221111100
Q ss_pred ----hh----------------hhhhhhhhc-hh---------------HHHHHhhhhHHHHHHHHHHHHhCCHHHHHHH
Q 019218 217 ----TT----------------GMRESVETS-LL---------------LQHRAKEVVPKRIVQMEEAIQNHDFSSFAQL 260 (344)
Q Consensus 217 ----~~----------------~~~~~~~~~-~~---------------~~~~~~~~~~~~~~~l~~al~~~D~~~l~~~ 260 (344)
+. .++...+.. .. ....+.+ ..++..++.+|.++|++.||++
T Consensus 221 ~y~~r~~e~~~a~~~l~~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~e--~~rv~~~~~al~~~d~~~lG~l 298 (386)
T TIGR00131 221 NYNTRRQECTTAANFLAATDKGALRDFMNEYFARYIARLTKMLPLVEERAKHVVSE--NLRVLKAVKAMKDNDFKQFGAL 298 (386)
T ss_pred hhHHHHHHHHHHHHHhccccccchhhCCHHHHhhhHhhHhhcCHHHHhhHheeehH--HHHHHHHHHHHHhCcHHHHHHH
Confidence 00 111111110 00 0111222 4457789999999999999999
Q ss_pred HHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCCCcEE-EeecCCc-hHHHHHHHHHh
Q 019218 261 TCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRCY-EFCDLKH-IFVLSILSASA 335 (344)
Q Consensus 261 ~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGpt~~~-~~~~~~~-~~~~~~l~~~~ 335 (344)
|+.++..|..++ ....|.+..+.+.+. +..|++|+++| |||+++|+ ++++++. +++.+.|++.+
T Consensus 299 m~~sh~~l~~~~-------~vs~peld~lv~~a~---~~~GAlGaklt-GaG~GG~vial~~~~~~~~v~~~~~~~y 364 (386)
T TIGR00131 299 MNESHASCDDDY-------ECTCPEIDELVCSAA---LVNGSGGSRMT-GAGFGGCTVHLVPNENVDKVRQAVADKY 364 (386)
T ss_pred HHHhhHHHHHhc-------CCCCHHHHHHHHHHH---hcCCCcEEEEe-cCCCceEEEEEEcHHHHHHHHHHHHHHH
Confidence 988876666532 224555555555542 24699866666 99998874 3566544 66888886666
No 36
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents the low GC Gram-positive organism forms of the ERG8 type of phosphomevalonate kinase.
Probab=99.89 E-value=7.5e-21 Score=184.35 Aligned_cols=293 Identities=15% Similarity=0.140 Sum_probs=183.5
Q ss_pred EEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecCc------------cc--CC--
Q 019218 11 TAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGK------------EI--SL-- 74 (344)
Q Consensus 11 ~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g~------------~~--~~-- 74 (344)
+++||.-+-| .|.+-+.| ||+..|.+|++ .|++++++..++. ..++.-+.. .. ..
T Consensus 2 ~~~APGKl~L---~GEhavv~--~G~pAl~~aI~---~~~~v~i~~~~~~-~~~i~s~~~~~~~~~~~~~~~~~~~~~~~ 72 (358)
T TIGR01220 2 VVHAPGKLFV---AGEYAVVE--PGNPAILVAVD---RFVTVTVEDADGA-ADVIISSDLGPQPVGWRRHDGRLVVRDPD 72 (358)
T ss_pred eeecceeEEE---eeeEEEec--CCCeEEEEEEc---CcEEEEEEeCCCC-ceEEEecCCCCCceEEEecCCceeecccc
Confidence 4567777766 47776655 47889999999 7888888765421 112221110 00 00
Q ss_pred ---CcchHHHHHHHHHHHccccccccccccccccccccccEEEEEeeCCCCc----ccccchhhhHHHHHHHHHHHhCCC
Q 019218 75 ---GGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTA----AGLASSAAGFACLVFSLAKLMNLK 147 (344)
Q Consensus 75 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~----~GLGSSaA~~vA~i~Al~~l~~~~ 147 (344)
.-+.+..+++.+++++... |+ +..++++++++++|++ +|||||||++||++.|++++++.+
T Consensus 73 ~~~~~~~v~~~i~~~~~~~~~~-----~~-------~~~g~~~~i~s~ip~~~g~k~GLGSSAA~~Va~~~Al~~~~~~~ 140 (358)
T TIGR01220 73 ARSALAYVVSAIETVERYAGER-----NQ-------KLPALHLSVSSRLDEADGRKYGLGSSGAVTVATVKALNAFYDLE 140 (358)
T ss_pred cccchHHHHHHHHHHHHHHHhc-----CC-------CCCceEEEEecCCCCcCCCCCCccHHHHHHHHHHHHHHHHhCCC
Confidence 0123445555554444321 11 1246888999999995 699999999999999999999999
Q ss_pred CCHHHHHHHHHhcc---------CccccccccCEEEEecccCC----------------CC-CCceEEEcCCCCCCCCce
Q 019218 148 ENQSQLSAIARQGS---------GSACRSLFGGFVKWILGKEG----------------NG-SDSLAVQLVDEEHWNDLV 201 (344)
Q Consensus 148 ls~~el~~lA~~~~---------Gs~a~s~~GG~v~~~~~~~~----------------~~-~~~~~~~l~~~~~~~~l~ 201 (344)
++++++.++|.+.| ++.+.|+|||++.+...... .. ......+++.+ ++++
T Consensus 141 l~~~~l~~lA~~~E~~~~g~~sg~D~~a~~~GG~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~---~~~~ 217 (358)
T TIGR01220 141 LSNDEIFKLAMLATAELQPKGSCGDIAASTYGGWIAYSTFDHDWVLQLARRVGVDRTLKAPWPGLSIRPLPAP---KGLT 217 (358)
T ss_pred CCHHHHHHHHHHHHhhhCCCCCcchhhhhhhCCEEEEecCCHHHHhhhhhccchhhhhccCCCccceeECCCC---CCCE
Confidence 99999999996432 24578999999887532100 00 00113344321 3455
Q ss_pred EEEEEECCCCcccCchhhhhhhhh---h-chhHHHHHhhhhHHHHHHHHHHHHhCCHHHHHHHHHHhhhHHhhhhccCCC
Q 019218 202 IIIAVVSSRQKETSSTTGMRESVE---T-SLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSP 277 (344)
Q Consensus 202 ~~vlv~~~~~~~~~s~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~l~~al~~~D~~~l~~~~~~d~~~lh~~~~~~~p 277 (344)
++++ ..+ .+.+|++.+..+.. + .+.++.++.+ +...+..+..+|.++|++.|+++|..|+..|+++... -
T Consensus 218 l~v~--~tg-~~~~T~~~v~~V~~~~~~~~~~~~~~l~~-~~~i~~~~~~al~~~d~~~lg~~~~~~~~lL~~l~~~--~ 291 (358)
T TIGR01220 218 LLIG--WTG-SPASTASLVSDVHRRKWRGSASYQRFLET-STDCVESAITAFETGDITSLQKEIRRNRQELARLDDE--V 291 (358)
T ss_pred EEEE--eCC-CCcCcHHHHHHHHHHhhcChHHHHHHHHH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhcc--c
Confidence 4444 333 23334443332211 1 1234455554 4778899999999999999999999999999988552 2
Q ss_pred CeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCCCcEEE-eecCCchHHHHHHHHHhhhCCcc
Q 019218 278 PIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRCYE-FCDLKHIFVLSILSASARENSYI 341 (344)
Q Consensus 278 ~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGpt~~~~-~~~~~~~~~~~~l~~~~~~~~~~ 341 (344)
++-+.+|.+.++++.+++ .|+ +++.+ |||.+.|++ ++.++ ...+.++...++.+++
T Consensus 292 ~~~vs~~~l~~li~~a~~----~ga-~aKls-GAGgGg~~ial~~~~--~~~~~~~~~~~~~G~~ 348 (358)
T TIGR01220 292 GVGIETEKLKALCDAAEA----YGG-AAKPS-GAGGGDCGIAILDAE--ADITHVRQRWETAGIL 348 (358)
T ss_pred CCCcCCHHHHHHHHHHhh----cCc-eecCC-CCCCcCEEEEEeCCc--hhHHHHHHHHHHCCCe
Confidence 445567888888888765 565 46654 999999954 44432 2334444444555554
No 37
>COG1907 Predicted archaeal sugar kinases [General function prediction only]
Probab=99.89 E-value=8.3e-21 Score=172.93 Aligned_cols=280 Identities=14% Similarity=0.129 Sum_probs=184.9
Q ss_pred EEEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecCcccCCCcchHHHHHHHHHH
Q 019218 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIRS 88 (344)
Q Consensus 9 ~~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g~~~~~~~~~~~~~~~~~~~ 88 (344)
.+++-+..+++|+..-|. ++=.+.++|+||+ ..+.+++++.+ +.+.++|++ +..++.+..+.
T Consensus 3 ~v~tpSrlH~gliDl~G~-----~GRv~GgvG~aLe--~P~l~i~~~~s-----~~~~~~ge~------~~~~~~~~a~~ 64 (312)
T COG1907 3 RVRTPSRLHAGLIDLNGS-----IGRVDGGVGLALE--EPRLEIEAKPS-----DDIEVDGED------RRERVEKAARL 64 (312)
T ss_pred EEecCceeeeccccCCCc-----ccceecceeEEee--CCceEEEEecc-----ccccccchh------hHHHHHHHHHH
Confidence 455666677888754443 2334779999999 35666655443 456666653 12345555555
Q ss_pred HccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcc--cc
Q 019218 89 RACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSA--CR 166 (344)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~~~~Gs~--a~ 166 (344)
.+.. ..+++|++.+.||.+.||||.++.++|+..|+++++++++|.+||+....++.-|+ .+
T Consensus 65 ~le~----------------~~gv~I~I~~~~P~HvGLGS~TQlaLa~a~ai~~i~gl~~~~~elA~~vgRG~tSgiGv~ 128 (312)
T COG1907 65 VLEV----------------GEGVKIEIRSDIPAHVGLGSTTQLALAVASAILEIYGLELSIRELAFAVGRGGTSGIGVY 128 (312)
T ss_pred hhcc----------------cCceEEEEEecCchhcCCChHHHHHHHHHHHHHHHhcCCCCHHHHHHHHccCCccceeEE
Confidence 5543 35689999999999999999999999999999999999999999999998885553 45
Q ss_pred cc-ccCEEEEecccCCC--CC--CceEEEcCCCCCCCCceEEEEEECCCCcccCchhhhhhhhhhchhHHHHHhhhhHHH
Q 019218 167 SL-FGGFVKWILGKEGN--GS--DSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKR 241 (344)
Q Consensus 167 s~-~GG~v~~~~~~~~~--~~--~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (344)
++ +|||++ +.|+... +. ..+..| .++|+-|.+|+++|........+.+..-+....|..-..+.++++..
T Consensus 129 afe~GGFIV-DGGh~~~f~ps~~sP~I~R----~dfPedW~~VlaIP~~~rg~~~~~E~~if~~~~p~p~~~~~~ls~~v 203 (312)
T COG1907 129 AFEYGGFIV-DGGHSFGFLPSSASPLIFR----LDFPEDWRFVLAIPEVERGVSGRREVDIFKKYCPVPLEEVGELSHRV 203 (312)
T ss_pred EEEECCEEE-ECCcccCcccCCCCceeee----ecCCCceEEEEEecCCCccccchHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 55 999987 6665331 00 112233 35676666777778754444444433322222343344555667888
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHhhhHHhhhh---ccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCCCcEEE
Q 019218 242 IVQMEEAIQNHDFSSFAQLTCADSNQFHAVC---LDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRCYE 318 (344)
Q Consensus 242 ~~~l~~al~~~D~~~l~~~~~~d~~~lh~~~---~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGpt~~~~ 318 (344)
+++|++|+.++|++.|++.+.+ ++.++ .+ .....+..+.-.++++.+.+ . ++++..+| =|||+. .
T Consensus 204 Lm~mmPavvE~Die~fg~~l~~----iQ~l~g~~f~-~~e~~~~~~~V~~iv~~m~~----~-a~~agqSS-wGPtvY-~ 271 (312)
T COG1907 204 LMKMMPAVVERDIESFGEALNE----IQELGGKWFK-KVEGGLQREDVKEIVDEMVE----A-AYGAGQSS-WGPTVY-G 271 (312)
T ss_pred HHHHhHHHHhhCHHHHHHHHHH----HHHHHhhhhh-hhhceeccHHHHHHHHHHHH----h-cccccccc-cCCEEE-E
Confidence 9999999999999999999854 33333 33 23445666666666665543 3 45456664 999988 6
Q ss_pred eecCCc-hHHHHHHHHHhhhCC
Q 019218 319 FCDLKH-IFVLSILSASARENS 339 (344)
Q Consensus 319 ~~~~~~-~~~~~~l~~~~~~~~ 339 (344)
++++.. ..+.+.+...+.+++
T Consensus 272 i~d~~~~~~~~~~~~~~~~~~g 293 (312)
T COG1907 272 IVDSREAGSVVRKLIDILLEEG 293 (312)
T ss_pred eccccccchHHHHHHHHHHhcC
Confidence 666655 446666666666544
No 38
>PRK05322 galactokinase; Provisional
Probab=99.87 E-value=1.1e-19 Score=177.89 Aligned_cols=281 Identities=16% Similarity=0.125 Sum_probs=174.5
Q ss_pred EEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEec---Cc---c-------cCC-C
Q 019218 10 VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLN---GK---E-------ISL-G 75 (344)
Q Consensus 10 ~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~---g~---~-------~~~-~ 75 (344)
..++||.-+-|+ |.+-+-|..| .|.+|++ .|+.+.+...++ ..+.+. .. . ... .
T Consensus 20 ~~~~APgRv~L~---GEH~d~~g~~---vl~~AI~---~~~~v~~~~~~~---~~i~i~s~~~~~~~~~~~~~~~~~~~~ 87 (387)
T PRK05322 20 DVFFSPGRINLI---GEHTDYNGGH---VFPAAIT---LGTYGAARKRDD---KKVRLYSANFEDLGIIEFDLDDLSFDK 87 (387)
T ss_pred eEEEcCceeEec---ccceeecCce---eeeeecc---ceEEEEEEECCC---CEEEEEECCCCCCceEEEeccccCCCC
Confidence 457889888884 8777776655 8999999 888888876542 233331 11 0 000 0
Q ss_pred ----cchHHHHHHHHHHHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHH
Q 019218 76 ----GGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQS 151 (344)
Q Consensus 76 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~ 151 (344)
.+.+..++..+.+. +. + ...+++|.++++||.++|||||||..||++.|++++++.+++++
T Consensus 88 ~~~w~~y~~gvi~~l~~~-~~--------~------~~~g~~i~i~s~iP~gsGLgSSAA~~va~~~al~~~~~~~l~~~ 152 (387)
T PRK05322 88 EDDWANYPKGVLKFLQEA-GY--------K------IDHGFDILIYGNIPNGAGLSSSASIELLTGVILKDLFNLDLDRL 152 (387)
T ss_pred ccchHHHHHHHHHHHHHc-CC--------C------CCCCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 11233344444332 21 0 02578999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcc----C------ccccccccC---EEEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCc--
Q 019218 152 QLSAIARQGS----G------SACRSLFGG---FVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSS-- 216 (344)
Q Consensus 152 el~~lA~~~~----G------s~a~s~~GG---~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s-- 216 (344)
+++++|.++| | +-..|.+|| .+.++.... + ...++. +++++.+++ .+.+.+....
T Consensus 153 ~la~~a~~~E~~~~G~~sG~mDq~as~~G~~~~~~~~d~~~~----~--~~~~~~--~~~~~~lvv--~dsg~~~~~~~~ 222 (387)
T PRK05322 153 ELVKLGQKTENEFIGVNSGIMDQFAIGMGKKDHAILLDCNTL----E--YEYVPL--DLGDYVIVI--MNTNKRRELADS 222 (387)
T ss_pred HHHHHHHHHHhccCCCCcchHHHHHHHhccCCeEEEEecCCC----c--eEEecc--CCCCeEEEE--EECCCccccCcc
Confidence 9999998775 2 225578997 444443211 1 223321 113334333 3544322111
Q ss_pred ---------hhhhhhhhhh---------c-hhHHHH---H------hhh-----hHHHHHHHHHHHHhCCHHHHHHHHHH
Q 019218 217 ---------TTGMRESVET---------S-LLLQHR---A------KEV-----VPKRIVQMEEAIQNHDFSSFAQLTCA 263 (344)
Q Consensus 217 ---------~~~~~~~~~~---------~-~~~~~~---~------~~~-----~~~~~~~l~~al~~~D~~~l~~~~~~ 263 (344)
.++.+.+... . ..++.. + .++ ...++..++.||.++|++.|+++|.+
T Consensus 223 ~yn~r~~e~~~a~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~h~v~e~~r~~~~~~al~~~d~~~lg~lm~~ 302 (387)
T PRK05322 223 KYNERRAECEKALEELQKKLDIKSLGELTEEEFDEYSYLIKDETLLKRARHAVTENQRTLKAVKALKAGDLEKFGRLMNA 302 (387)
T ss_pred hhhHHHHHHHHHHHHHhhhcCccchhcCCHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 1222111000 0 001110 0 010 13578999999999999999999999
Q ss_pred hhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCCCcEE-EeecCC-chHHHHHHHHHhhhC
Q 019218 264 DSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRCY-EFCDLK-HIFVLSILSASAREN 338 (344)
Q Consensus 264 d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGpt~~~-~~~~~~-~~~~~~~l~~~~~~~ 338 (344)
++..||+.++- .. |++.++.+.+++ ..|++ ++.+||||+++|+ ++++.+ .+++.+.|++..++.
T Consensus 303 sh~~L~~~y~~------s~-~eld~lv~~a~~---~~Ga~-garlsGaG~GG~vial~~~~~~~~~~~~l~~~y~~~ 368 (387)
T PRK05322 303 SHVSLRDDYEV------TG-LELDTLVEAAWK---QEGVL-GARMTGAGFGGCAIAIVKKDKVEAFKENVGKAYEEK 368 (387)
T ss_pred hhHHHHhhhcC------CC-HhHHHHHHHHHh---cCCcc-EEEEecCCCceEEEEEEcHHHHHHHHHHHHHHHHHh
Confidence 99999965543 34 677777777643 36888 5666699998774 355554 366777777766553
No 39
>PRK00555 galactokinase; Provisional
Probab=99.87 E-value=1.9e-19 Score=174.86 Aligned_cols=283 Identities=16% Similarity=0.177 Sum_probs=170.6
Q ss_pred eEEEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecCccc-----------CCC-
Q 019218 8 LMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEI-----------SLG- 75 (344)
Q Consensus 8 ~~~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g~~~-----------~~~- 75 (344)
|+++++||--+-| .|.|-+-+. ++ .+.+|++ .++.+.+...++ +.+.+..... ...
T Consensus 1 m~~~~~APGRv~L---iGEH~dy~~--g~-vl~~Ai~---~~~~v~~~~~~~---~~i~i~s~~~~~~~~~~~~~~~~~~ 68 (363)
T PRK00555 1 MTVRYAAPGRINL---IGEHTDYNL--GF-ALPIALP---QRTVVTFTPEHT---DAITASSDRADGSARIPLDTTPGQV 68 (363)
T ss_pred CCEEEEcCceEEe---ecccccCCC--Ce-EEeEEee---ccEEEEEEECCC---CEEEEEECCCCCceEEecCCCCCCC
Confidence 5678899999998 488887774 34 9999999 788888776542 2333311110 001
Q ss_pred ---cchHHHHHHHHHHHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHH
Q 019218 76 ---GGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQ 152 (344)
Q Consensus 76 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~e 152 (344)
.+.+..++..+++ .+. ...+++|.++++||.++|||||||..+|++.|++++++.++++++
T Consensus 69 ~~w~~y~~gv~~~l~~-~g~---------------~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~~~~~~~~~~~ 132 (363)
T PRK00555 69 TGWAAYAAGVIWALRG-AGH---------------PVPGGAMSITSDVEIGSGLSSSAALECAVLGAVGAATGTRIDRLE 132 (363)
T ss_pred cchHHHHHHHHHHHHH-cCC---------------CCCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 1223334343433 222 124789999999999999999999999999999999999999999
Q ss_pred HHHHHHhcc----C------ccccccccCE---EEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCchhh
Q 019218 153 LSAIARQGS----G------SACRSLFGGF---VKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTG 219 (344)
Q Consensus 153 l~~lA~~~~----G------s~a~s~~GG~---v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~ 219 (344)
++++|.++| | +-..|+|||. +.++... . ...+++.+..++++. +++.+...+...++..
T Consensus 133 la~~a~~aE~~~~G~~~G~~Dq~as~~G~~~~~~~~d~~~----~--~~~~v~~~~~~~~~~--lvv~~s~~~~~~~~~~ 204 (363)
T PRK00555 133 QARLAQRAENEYVGAPTGLLDQLAALFGAPKTALLIDFRD----L--TVRPVAFDPDAAGVV--LLLMDSRARHRHAGGE 204 (363)
T ss_pred HHHHHHHHHHhhCCCCCChhHHHHHHhCCCCeEEEEEcCC----C--cEEEeccCCCcCceE--EEEEcCCCcccccchh
Confidence 999997664 2 2245889974 4444321 1 133343211112223 3344443221111111
Q ss_pred -------hhh---hhhh------c-------------h---hHHHHHhhhhHHHHHHHHHHHHhCCHHHHHHHHHHhhhH
Q 019218 220 -------MRE---SVET------S-------------L---LLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQ 267 (344)
Q Consensus 220 -------~~~---~~~~------~-------------~---~~~~~~~~~~~~~~~~l~~al~~~D~~~l~~~~~~d~~~ 267 (344)
... .+.. . . .....+.+ ..++..++.+|.++|++.|+++|..+
T Consensus 205 y~~rr~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~~~~~r~~h~~~e--~~~v~~~~~al~~gd~~~lg~lm~~~--- 279 (363)
T PRK00555 205 YAARRASCERAAADLGVSSLRAVQDRGLAALGAIADPIDARRARHVLTE--NQRVLDFAAALADSDFTAAGQLLTAS--- 279 (363)
T ss_pred hHHHHHHHHHHHHHhCccchhcCCHHHHHHHHhcCChHHHHHHHHHHHH--HHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence 100 0000 0 0 01112222 45889999999999999999998654
Q ss_pred HhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCCCcEE-EeecCCc-hHHHHHHHHHhhhCCc
Q 019218 268 FHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRCY-EFCDLKH-IFVLSILSASARENSY 340 (344)
Q Consensus 268 lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGpt~~~-~~~~~~~-~~~~~~l~~~~~~~~~ 340 (344)
|+.++.. ...-.|.+..+.+.+++ .|++ ++-+||||.+.|+ ++++.+. +++.+.|++.+++..+
T Consensus 280 -h~~lr~~---~~vS~~~ld~l~~~a~~----~Ga~-GaklsGaG~Gg~vial~~~~~~~~~~~~l~~~y~~~~~ 345 (363)
T PRK00555 280 -HASMRDD---FEITTERIDLIADSAVR----AGAL-GARMTGGGFGGCVIALVPADRAEDVADTVRRAAVTAGY 345 (363)
T ss_pred -hHHHHhh---cCCCChhHHHHHHHHHh----cCCe-EEEECCCCccCeEEEEEchhHHHHHHHHHHHHHHHccC
Confidence 5544421 01124566666665544 6898 5556699644442 4666554 6788899888876543
No 40
>KOG1537 consensus Homoserine kinase [Amino acid transport and metabolism]
Probab=99.86 E-value=1.1e-21 Score=175.54 Aligned_cols=206 Identities=15% Similarity=0.104 Sum_probs=151.1
Q ss_pred cEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcc-----------------------------
Q 019218 111 HLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGS----------------------------- 161 (344)
Q Consensus 111 ~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~~~~----------------------------- 161 (344)
.-++++.|.||.++|+|||+++.+|++...|+..++.|++..++.....++
T Consensus 94 ~Tk~hvtNPiplgrGigssgta~~aGv~l~ne~a~LGlsk~~mldy~lmierhpdn~~a~mmGgf~GSflr~l~e~E~~~ 173 (355)
T KOG1537|consen 94 TTKKHVTNPIPLGRGIGSSGTAKMAGVRLVNESADLGLSKGSMLDYSLMIERHPDNAVAEMMGGFLGSFLRALLESEAKV 173 (355)
T ss_pred ceeeeecCCccccccccchhhhhhhhheecchHhhcCCccccchhHHHHHhhChHHHHHHHHhhHHHHHHHHhCHhhhhh
Confidence 456788899999999999999999999999999988888765544332111
Q ss_pred -C----ccccccccCEEEEecccCCC-CCCceEEEcCCCCCC-CCceEEEEEECCCCcccCchhhhhhhhhhchhHHHHH
Q 019218 162 -G----SACRSLFGGFVKWILGKEGN-GSDSLAVQLVDEEHW-NDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRA 234 (344)
Q Consensus 162 -G----s~a~s~~GG~v~~~~~~~~~-~~~~~~~~l~~~~~~-~~l~~~vlv~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 234 (344)
| +..+.+.|||++...-++.+ |+ ..|+ +| +++++++++++.+ . +|+.||.++|+.....+.+
T Consensus 174 ~~~~ad~ilp~~~gg~~li~~lpP~dlg~---~~r~----pw~~~lk~i~viP~Fe---l-~T~k~R~vLPt~yp~~d~V 242 (355)
T KOG1537|consen 174 SGYHADNILPAIMGGFVLIRNLPPLDLGK---PLRF----PWDKDLKFILVIPDFE---L-PTKKMRAVLPTEYPMVDHV 242 (355)
T ss_pred cCCCHHHhcccccCCeeeecCCCcccccc---cccC----CCCccceEEEEecccc---c-cchhhhhhcCccccceeee
Confidence 1 13678889988754432110 11 2233 35 6788777665443 3 4555888889865556666
Q ss_pred hhhhHHHHHHHHHHHHhC-CHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCC
Q 019218 235 KEVVPKRIVQMEEAIQNH-DFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALS 313 (344)
Q Consensus 235 ~~~~~~~~~~l~~al~~~-D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGp 313 (344)
.| .++++.|..|+.++ |--.|+...+.| +.| +|||..++|.+.++...+...- .-|.+ +..+|||||
T Consensus 243 ~N--lqrlA~LttAl~~~p~n~~L~y~~m~D--kvh------qPyRa~LIPGl~~il~~~~p~t-~pGl~-GiclSGAGP 310 (355)
T KOG1537|consen 243 WN--LQRLAALTTALLEGPDNVMLGYALMSD--KVH------QPYRAPLIPGLEAILKAALPAT-YPGLF-GICLSGAGP 310 (355)
T ss_pred ec--HHHHHHHHHHHhcCCCchhhhhhhhhc--ccc------CccccccCccHHHHHHhhCccc-CCcee-eEEecCCCC
Confidence 66 88999999999998 666666666664 889 6777889999999999987532 24887 667779999
Q ss_pred CcEEEeecCCchHHHHHHHHHhhhCCc
Q 019218 314 GRCYEFCDLKHIFVLSILSASARENSY 340 (344)
Q Consensus 314 t~~~~~~~~~~~~~~~~l~~~~~~~~~ 340 (344)
|++ ++..++-+++-+.|-+.||+.+.
T Consensus 311 T~l-Alatenf~eI~~~mv~~F~K~G~ 336 (355)
T KOG1537|consen 311 TAL-ALATENFQEIGEKMVEAFWKVGH 336 (355)
T ss_pred eeE-EEecCcHHHHHHHHHHHHHhhCc
Confidence 998 66677779999999999998654
No 41
>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.85 E-value=3.7e-20 Score=171.24 Aligned_cols=181 Identities=18% Similarity=0.169 Sum_probs=133.7
Q ss_pred eEEEEEecceeEeeeecccccCCCCCCCCCeeEEEe-CCCCceeEEEEEEcCCCCcceEEecCcc-cCCCcchHHHHHHH
Q 019218 8 LMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTL-DPDHLCTTTTVAVSPSFDQDRMWLNGKE-ISLGGGRYQNCLKE 85 (344)
Q Consensus 8 ~~~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal-~~~~l~~~~~v~~~~~~~~~~i~i~g~~-~~~~~~~~~~~~~~ 85 (344)
|.+++.|+.|+.| ...||| |+|| ..+|+...+ + ||++++|+... ...+.+.+.. .+..+|.+.++++.
T Consensus 1 ~~~~apaKINL~L-~v~~kr-dGyH--~l~s~~~~i~~---l~D~l~i~~~~---~~~~~i~~~~~~p~~~NLv~kA~~~ 70 (257)
T PRK04181 1 MVMKAYAKVNIFL-KILGKR-GNYH--ELISRFVLVKD---LFDEIEFVPKS---AESFELIGNFDCPLEENIIYKAYQE 70 (257)
T ss_pred CCccccceEEEEE-eeCcCC-CCCc--eeheeeeEccC---cCcEEEEEECC---CCCEEEEcCCCCCCCCcHHHHHHHH
Confidence 5678999999999 448999 9999 699999999 7 99999998643 2235554432 22236888888888
Q ss_pred HHHH-ccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcc
Q 019218 86 IRSR-ACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSA 164 (344)
Q Consensus 86 ~~~~-~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~~~~Gs~ 164 (344)
+++. ++.. +. ....+++|+++|+||+++|||||||++||++.++|++++.+++.++|.++|.++..++
T Consensus 71 l~~~~~~~~--------~~---~~~~gv~I~i~K~IP~gaGLGggSSdAAA~L~aln~l~~~~ls~~eL~~lA~~lGaDv 139 (257)
T PRK04181 71 LKNKGFSNE--------LI---EFFKKKAIEVEKNIPTGAGLGGGSSDAATFLLMLNEILNLKLSLEELAEIGSKVGADV 139 (257)
T ss_pred HHHhccccc--------cc---cCCCceEEEEEeCCCCcCcccccHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc
Confidence 8773 3310 00 0014689999999999999999999999999999999999999999999999999999
Q ss_pred cccccc-CEEEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCchhhhhh
Q 019218 165 CRSLFG-GFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRE 222 (344)
Q Consensus 165 a~s~~G-G~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~~ 222 (344)
+.+++| |..+. .|.++ ...+++. . + .. ++++.|. ..++|.+++++
T Consensus 140 Pffl~~~~~a~~-~G~Ge-----~l~~l~~--~-~-~~-~~lv~P~--~~vsT~~vy~~ 185 (257)
T PRK04181 140 AFFISGYKSANV-SGIGE-----IVEEFEE--E-I-LN-LEIFTPN--IFCSTKAVYKA 185 (257)
T ss_pred cEEecCCceEEE-EeeCC-----eeEECCC--C-C-Ce-EEEECCC--CCcCHHHHHHH
Confidence 999999 76543 34332 2455531 1 2 23 4444443 46777777653
No 42
>PLN02677 mevalonate kinase
Probab=99.85 E-value=8.4e-19 Score=170.69 Aligned_cols=293 Identities=16% Similarity=0.176 Sum_probs=172.7
Q ss_pred eEEEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCC-CcceEEec-----------Cccc---
Q 019218 8 LMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSF-DQDRMWLN-----------GKEI--- 72 (344)
Q Consensus 8 ~~~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~-~~~~i~i~-----------g~~~--- 72 (344)
|.+.++||--+-| .|.+-+.+. ...|.+|++ +|+++.++..+.. ....+.++ ....
T Consensus 1 ~~i~v~apgk~~l---~Geh~~~~g---~~a~~~ai~---~~~~~~~~~~~~~~~~~~i~~~~~di~~~~~~~~~~l~~~ 71 (387)
T PLN02677 1 MEVKARAPGKIIL---AGEHAVVHG---STAVAAAID---LYTYVSLRFPPSAENDDTLKLQLKDLGLEFSWPLARIKEA 71 (387)
T ss_pred CceEEeCCccEEE---eeeeeeecC---CeeeeeEee---ceEEEEEEecCCCCCCCeEEEEcCCCCceEEechHhhhhh
Confidence 4577888888877 488877664 459999999 9999988753210 11223221 1100
Q ss_pred ---------CCCcchHHHHHHHHHHHccccccccccccccccc-----------cccccEEEEEeeCCCCcccccchhhh
Q 019218 73 ---------SLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKD-----------WQKLHLHIASFNNFPTAAGLASSAAG 132 (344)
Q Consensus 73 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~v~I~~~~~IP~~~GLGSSaA~ 132 (344)
......+...++.+.++..... .+.+.+.-+.. .+..+++|+++++||+++|||||||.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~-~~~~~~~~~~~~~~flyl~~~~~~~~~~~i~I~S~lP~GaGLGSSAAv 150 (387)
T PLN02677 72 LPDLGTPCPSTPTSCSEETLKSIAALVEEQN-IPEAKIWLSSGVSAFLWLYTSILGFNPATVVVTSELPLGSGLGSSAAF 150 (387)
T ss_pred hccccccccccccccCHHHHHHHHHHHHhcC-CcchhhhhhhHHHHHHHHHHHhccCCCeEEEEEccCCCCCCccHHHHH
Confidence 0001123334454544443210 00000000000 00235789999999999999999999
Q ss_pred HHHHHHHHHHHhC-CCC----------CH---HHHHHHHHhc----cC-----ccccccccCEEEEecccCCCCCCceEE
Q 019218 133 FACLVFSLAKLMN-LKE----------NQ---SQLSAIARQG----SG-----SACRSLFGGFVKWILGKEGNGSDSLAV 189 (344)
Q Consensus 133 ~vA~i~Al~~l~~-~~l----------s~---~el~~lA~~~----~G-----s~a~s~~GG~v~~~~~~~~~~~~~~~~ 189 (344)
+||++.|++.+++ +++ +. +++.++|..+ .| +.+.|.|||++.+..+. ..
T Consensus 151 ~Va~~~AL~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~A~~~E~~~hG~pSGiD~a~s~~Gg~I~f~~~~--------~~ 222 (387)
T PLN02677 151 CVALSAALLAASDSISVSTGGNGWSSLDETDLELVNKWAFEGEKIIHGKPSGIDNTVSTYGNMIKFKSGE--------LT 222 (387)
T ss_pred HHHHHHHHHHHhCCcccccccccccccChhHHHHHHHHHHHHHHHHhCCCCchhHHHHhcCCeEEEcCCC--------ce
Confidence 9999999999998 333 22 4666777544 22 34778999998875532 23
Q ss_pred EcCCCCCCCCceEEEEEECCCCcccCchhhhhhhhhh----c-hhHHHHHhhhhHHHHHHHHHHHHh---------CCHH
Q 019218 190 QLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVET----S-LLLQHRAKEVVPKRIVQMEEAIQN---------HDFS 255 (344)
Q Consensus 190 ~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~l~~al~~---------~D~~ 255 (344)
+++. .++++++ +.+.+ .+. +|..+.+.+.. . ..++..++. +...+..+..+|.+ +|++
T Consensus 223 ~l~~---~~~l~ll--v~dTg-v~~-sT~~lV~~V~~~~~~~p~~~~~il~~-~~~i~~~a~~al~~~~~~~~~~~~~~~ 294 (387)
T PLN02677 223 RLQS---NMPLKML--ITNTR-VGR-NTKALVAGVSERALRHPDAMKSVFNA-VDSISEELATIIQSPAEDELSITEKEE 294 (387)
T ss_pred ecCC---CCCceEE--EEECC-CCC-cHHHHHHHHHHHHHhCHHHHHHHHHH-HHHHHHHHHHHHhccccccccccchHH
Confidence 4432 1345543 34544 233 44444433321 1 233444443 57788999999998 5799
Q ss_pred HHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCCCcEEE-eecCC-chHHHHHHHH
Q 019218 256 SFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRCYE-FCDLK-HIFVLSILSA 333 (344)
Q Consensus 256 ~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGpt~~~~-~~~~~-~~~~~~~l~~ 333 (344)
.|+++|+.||.+|.+++++. |.+.++++.+++ .|. +++.| |||.+.|++ +.+++ +++..+.+..
T Consensus 295 ~Lg~lm~~N~~LL~~LGVS~--------~~le~iv~~a~~----~~~-~AKlT-GAGgGGC~IaL~~~~~~~~~~~~l~~ 360 (387)
T PLN02677 295 KLKELMEMNQGLLQCMGVSH--------SSIETVLRTTLK----YKL-VSKLT-GAGGGGCVLTLLPTLLSGTVVDKVIA 360 (387)
T ss_pred HHHHHHHHHHHHHHHcCCCc--------HHHHHHHHHHHH----cCC-ccccc-cCCCCCEEEEEcccccchhHHHHHHH
Confidence 99999999999999999864 344555555543 453 46666 999999854 44432 2333444444
Q ss_pred HhhhCCc
Q 019218 334 SARENSY 340 (344)
Q Consensus 334 ~~~~~~~ 340 (344)
..+..+|
T Consensus 361 ~l~~~G~ 367 (387)
T PLN02677 361 ELESSGF 367 (387)
T ss_pred HHHHCCC
Confidence 4444444
No 43
>PRK05101 galactokinase; Provisional
Probab=99.85 E-value=1.9e-18 Score=169.00 Aligned_cols=277 Identities=15% Similarity=0.172 Sum_probs=170.5
Q ss_pred EEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecC-----cc--------c-CCC
Q 019218 10 VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNG-----KE--------I-SLG 75 (344)
Q Consensus 10 ~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g-----~~--------~-~~~ 75 (344)
+.++||.-|-| .|+|.| |+ +..+|.+|+| +|+.+.+...++ +.+.+.. +. . ...
T Consensus 21 ~~~~APgRvnL---~GeH~D-y~--gg~vL~~AId---~~~~v~i~~~~~---~~i~v~s~~~~~~~~~~~~~~~~~~~~ 88 (382)
T PRK05101 21 HTIQAPGRVNL---IGEHTD-YN--DGFVLPCAID---YQTVISCAKRDD---RIVRVIAADYDNQQDEFSLDAPIVPHP 88 (382)
T ss_pred eEEECCceEEE---ecccee-ec--CCEEEEEEec---ccEEEEEEECCC---CEEEEEECCCCCCceEEecCcccccCC
Confidence 56889999988 599988 66 4669999999 899988876542 2233211 00 1 000
Q ss_pred ----cchHHHHHHHHHHHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHH
Q 019218 76 ----GGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQS 151 (344)
Q Consensus 76 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~ 151 (344)
.+.+..++..++..... ..+++|.+.++||+++|||||||..+|++.|++++++.+++++
T Consensus 89 ~~~w~~yv~~~~~~l~~~~~~----------------~~g~~i~i~~~iP~gaGLgSSAA~~va~~~al~~~~~~~l~~~ 152 (382)
T PRK05101 89 EQQWANYVRGVVKHLQERNPD----------------FGGADLVISGNVPQGAGLSSSASLEVAVGQTFQQLYHLPLSGA 152 (382)
T ss_pred CCchHHHHHHHHHHHHHhCCC----------------CCCeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHH
Confidence 23355556555543221 2478999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcc----Ccc------ccccccC---EEEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcc-c---
Q 019218 152 QLSAIARQGS----GSA------CRSLFGG---FVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKE-T--- 214 (344)
Q Consensus 152 el~~lA~~~~----Gs~------a~s~~GG---~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~-~--- 214 (344)
+|+++|.++| |.. ..|.+|| ++..+... ....+++. + +++.++++ +.+.+. .
T Consensus 153 ~la~~a~~~E~~~~G~~~G~~Dq~~s~~G~~~~~~~~d~~~------~~~~~~~~--~-~~~~~vv~--~sg~~~~l~~~ 221 (382)
T PRK05101 153 EIALNGQEAENQFVGCNCGIMDQLISALGKKDHALLIDCRS------LETKAVPM--P-EGVAVVII--NSNVKRGLVDS 221 (382)
T ss_pred HHHHHHHHHHHHhcCCCCccHHHHHHHcCCCCeEEEEEcCC------CceEEeeC--C-CCcEEEEE--eCCCCcccccc
Confidence 9999997764 321 3477887 33333321 11233431 1 34554443 333111 0
Q ss_pred --Cchh-----hhh----hhhhhc--hhHH-----------HHHhhhh--HHHHHHHHHHHHhCCHHHHHHHHHHhhhHH
Q 019218 215 --SSTT-----GMR----ESVETS--LLLQ-----------HRAKEVV--PKRIVQMEEAIQNHDFSSFAQLTCADSNQF 268 (344)
Q Consensus 215 --~s~~-----~~~----~~~~~~--~~~~-----------~~~~~~~--~~~~~~l~~al~~~D~~~l~~~~~~d~~~l 268 (344)
.++. +.+ +.+... ..+. .+..... ..++.....+|.++|++.||++|+.++..|
T Consensus 222 ~y~~r~~e~~~A~~~l~~~~l~~~~~~~~~~~~~~l~~~~~~r~~h~i~E~~rv~~a~~al~~~d~~~lG~Lm~~sh~~l 301 (382)
T PRK05101 222 EYNTRRQQCETAARFFGVKALRDVTLEQFNAVAAELDPVVAKRARHVITENARTLEAASALAAGDLKRMGELMAESHASM 301 (382)
T ss_pred chhHHHHHHHHHHHHhChHhhhcCCHHHHHHHHhhCCHHHHHHHHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHhHHH
Confidence 1221 000 000000 0000 0111111 246788999999999999999999998887
Q ss_pred hh-hhccCCCCeeeecccHHHHHHHHHHHHhhcCCc-eEEEEecCCCCcEEE-eecCCc-hHHHHHHHHHhhh
Q 019218 269 HA-VCLDTSPPIFYMNDTSHRIISYVERWNRSVGSP-QVCSFFAALSGRCYE-FCDLKH-IFVLSILSASARE 337 (344)
Q Consensus 269 h~-~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~-~~~~~sgAGpt~~~~-~~~~~~-~~~~~~l~~~~~~ 337 (344)
.. ...+ .|.+..+++.+++ ..|+. ++++| |||.++|++ +++++. +++.+.+.+.+++
T Consensus 302 r~~~~vS--------~~eld~lv~~a~~---~~Ga~gGaklt-GaG~GG~~ial~~~~~~~~~~~~~~~~y~~ 362 (382)
T PRK05101 302 RDDFEIT--------VPQIDTLVEIVKA---VIGDQGGVRMT-GGGFGGCIVALVPEELVEAVRQAVAEQYEA 362 (382)
T ss_pred HhhcCCC--------CHhHHHHHHHHHh---ccCCcceEEec-cCCCccEEEEEEcHHHHHHHHHHHHHHHHH
Confidence 53 4443 3444555555544 23753 45666 999999854 555544 6688888666544
No 44
>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.79 E-value=1.6e-17 Score=150.23 Aligned_cols=247 Identities=15% Similarity=0.148 Sum_probs=153.6
Q ss_pred eEEEEEecceeEeeeecccccCCCCCCCCCee--EEEeCCCCceeEEEEEEcCCCCcceEEecCcccCCCcchHHHHHHH
Q 019218 8 LMVTAQTPTNIAVIKYWGKRDETLILPVNDSI--SVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKE 85 (344)
Q Consensus 8 ~~~~~~a~~nial~ky~Gk~d~~~~~P~~dsi--glal~~~~l~~~~~v~~~~~~~~~~i~i~g~~~~~~~~~~~~~~~~ 85 (344)
|+.+++||.-+.+|--. | +=. .+.++ |+++++|++++ +..+.|++..+ ...+.+|++.
T Consensus 1 ~~~~a~A~g~~TIiNAi---------a--tG~G~Afgid---L~v~a~v~~~~-----~~~~~~~~~~d-~~li~~~~~~ 60 (278)
T COG1685 1 MMGRARAYGGGTIINAI---------A--TGKGSAFGID---LKVEAEVRLSD-----EGKVRGEPEGD-TRLIERCVER 60 (278)
T ss_pred CCceEEecCceeEeeeh---------h--cCccceeeec---ceEEEEEEEcC-----ccccccCCCCC-hHHHHHHHHH
Confidence 35567777766665211 1 112 25677 88999998874 34444554333 5778899999
Q ss_pred HHHHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcc---C
Q 019218 86 IRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGS---G 162 (344)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~~~~---G 162 (344)
++++++. ..+++++++++||+++||.||||.+.|++.|+.+++|.++++.++++++.+.+ |
T Consensus 61 v~e~~g~----------------~~~~~v~v~SeiP~~~GLkSSSA~~nAlv~A~~~~~g~~~~~~~i~~l~a~~S~~aG 124 (278)
T COG1685 61 VREKYGI----------------PLGVEVEVESEIPVGSGLKSSSAASNALVKAVLKALGEEIDDFEILRLGARASKEAG 124 (278)
T ss_pred HHHHcCC----------------CcceEEEEecCCCcccCcchhHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHhcC
Confidence 9999987 56799999999999999999999999999999999999999999999997663 3
Q ss_pred --------ccccccccCEEEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCchhhhhhhhhhchhHHHHH
Q 019218 163 --------SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRA 234 (344)
Q Consensus 163 --------s~a~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 234 (344)
++|+|+|||+++.++...+ +..+. +.+++..++++ |.+ +..+.....+++....+
T Consensus 125 vSvTGA~DDa~AS~~GG~~iTDN~~m~-----Ilrr~----~~~~~~vlI~~-p~~-k~~~~~vdv~~~r~~a~------ 187 (278)
T COG1685 125 VSVTGAFDDACASYLGGIVITDNRKMR-----ILRRL----DLPELTVLILA-PGE-KRLSANVDVNRLRLIAP------ 187 (278)
T ss_pred ceEeccchHHHHHHhCCeEEecchhhe-----ehhcc----ccCCceEEEEe-cCC-ccccccCCHHHHHHhhH------
Confidence 3588999999997764211 12221 23566655554 443 21111111111101111
Q ss_pred hhhhHHHHHHHHHHHHhCCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCCC
Q 019218 235 KEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSG 314 (344)
Q Consensus 235 ~~~~~~~~~~l~~al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGpt 314 (344)
.+......-.+|+|.. +|..| ..+...... . ..++...+++ +|+. ++=.||.||.
T Consensus 188 ------~~e~A~~lA~~G~~~~---Am~lN-G~~y~~aLG-~---------~~e~~~~ale----~GA~-~aglSGtGPa 242 (278)
T COG1685 188 ------VVEEAFRLALKGEYFK---AMVLN-GILYCSALG-Y---------DLEPALKALE----AGAA-AAGLSGTGPA 242 (278)
T ss_pred ------HHHHHHHHHhcccHHH---HHHHh-HHHHHHHhC-C---------ChHHHHHHHh----cccc-eeccCCCCCc
Confidence 1222223335677744 45445 233322221 1 1333444443 6775 6667799999
Q ss_pred cEEEeecCCchHHHHHHHHH
Q 019218 315 RCYEFCDLKHIFVLSILSAS 334 (344)
Q Consensus 315 ~~~~~~~~~~~~~~~~l~~~ 334 (344)
.+ .++++. +++.++.+..
T Consensus 243 ~~-Al~~~~-~~v~ea~~~~ 260 (278)
T COG1685 243 YF-ALTEDP-EEVAEAWSKI 260 (278)
T ss_pred eE-EEecCc-HHHHHHHHhC
Confidence 88 555544 6677766544
No 45
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism]
Probab=99.74 E-value=4.5e-15 Score=141.50 Aligned_cols=275 Identities=18% Similarity=0.180 Sum_probs=173.7
Q ss_pred EEEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEe---cCccc--------C---C
Q 019218 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWL---NGKEI--------S---L 74 (344)
Q Consensus 9 ~~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i---~g~~~--------~---~ 74 (344)
..+++||--+-|| |.|-| || +.-.+.+|+| ..|.+.|+..++ .++.+ |.... + .
T Consensus 23 ~~~~~aPGRvNLI---GEHtD-Yn--~G~VlP~Ain---~~t~v~v~~r~d---~~v~l~s~n~~~~~~~~~~~~d~~~~ 90 (390)
T COG0153 23 TVTAFAPGRVNLI---GEHTD-YN--GGFVLPCAIN---YGTYVAVAKRDD---GKVRLYSANFGNAGDIFFLLLDIAKE 90 (390)
T ss_pred ceEecCCceEEee---cccee-cc--CceEEEEEee---cceEEEEEEccC---ceEEEEeCCCccccceeecchhhccc
Confidence 3678999998886 65543 44 4668899999 777777776643 22332 21100 0 0
Q ss_pred C----cchHHHHHHHHHHHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCH
Q 019218 75 G----GGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQ 150 (344)
Q Consensus 75 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~ 150 (344)
. .+.+..++..++. .|.. -.+++|.+.++||.|+||+||||.-||++.++.+++++++++
T Consensus 91 ~~~~W~nYvkgvi~~l~~-~g~~---------------~~G~~i~i~gnIP~GaGLSSSAAleva~~~al~~l~~~~~~k 154 (390)
T COG0153 91 KIDDWANYVKGVIKALQK-RGYA---------------FTGLDIVISGNIPIGAGLSSSAALEVAVALALQRLFNLPLDK 154 (390)
T ss_pred ccchhhhhHHHHHHHHHh-cCCC---------------cCCeeEEEecCCCCCCCcCchHHHHHHHHHHHHHHhCCCCCH
Confidence 0 2233334444433 2331 247899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCc----------ccccccc---CEEEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCch
Q 019218 151 SQLSAIARQGSGS----------ACRSLFG---GFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSST 217 (344)
Q Consensus 151 ~el~~lA~~~~Gs----------~a~s~~G---G~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~ 217 (344)
.+|++++.+.|-+ -..+.|| -.++.+.... .++.++ +|...+.+++.+...+.-...
T Consensus 155 ~~la~i~q~AEn~fvGvn~G~mDQ~~s~~G~~~~al~ld~~~l------~~~~~~----~p~~~~~ivI~ns~vkr~la~ 224 (390)
T COG0153 155 AELAKIAQVAENQFVGVNCGIMDQLASAFGKKDHALLLDCRTL------EYEPVP----FPVGGVSIVIVNSNVKRELAD 224 (390)
T ss_pred HHHHHHHHHHHhhccCCcCchHHHHHHHhCCCCcEEEEEcccC------ceEEec----cCccceEEEEecCCCccccch
Confidence 9999999877632 1446677 4444443221 144443 243334555566542111111
Q ss_pred hhh---------------------hhh----h----hhc-------hhHHHHHhhhhHHHHHHHHHHHHhCCHHHHHHHH
Q 019218 218 TGM---------------------RES----V----ETS-------LLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLT 261 (344)
Q Consensus 218 ~~~---------------------~~~----~----~~~-------~~~~~~~~~~~~~~~~~l~~al~~~D~~~l~~~~ 261 (344)
..+ +.+ + ... .....++.+ .+++...+.||.++|+..||++|
T Consensus 225 seYn~Rr~ece~A~~~l~~~~~~L~d~~~~~~~~~~~~i~~~~~~~rRa~hvv~E--n~Rvl~a~~Al~~~dl~~fG~Lm 302 (390)
T COG0153 225 SEYNERRAECEEAAEFLGVSIKSLRDVTDEEFAALQAEIEVDPKIARRARHVVTE--NQRVLEAAKALRSGDLTEFGELM 302 (390)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhcCHHHHHhhhhhcccchHHHHHHHHHHhH--HHHHHHHHHHHHcCCHHHHHHHH
Confidence 111 100 0 000 011123333 56788999999999999999999
Q ss_pred HHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCCCcEEE-eecCCc-hHHHHHHHHH
Q 019218 262 CADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRCYE-FCDLKH-IFVLSILSAS 334 (344)
Q Consensus 262 ~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGpt~~~~-~~~~~~-~~~~~~l~~~ 334 (344)
+..|..|...+.- -.|.+..|.+.++. ..|++|+..| |||-++|++ +.+.++ +.+.+.+.+.
T Consensus 303 ~~SH~slrddyev-------t~pElD~lve~a~~---~~G~~GaRmT-GaGfGGc~IaLv~~~~v~~~~e~v~~~ 366 (390)
T COG0153 303 NESHESLRDDYEV-------TCPELDTLVEIALA---AGGAYGARMT-GAGFGGCVIALVPNDDVEAVAEAVAEE 366 (390)
T ss_pred HHHHHHHHhcccc-------cchhHHHHHHHHHH---cCCcccceec-CCCCCceEEEEechhhHHHHHHHHHHh
Confidence 9887777654442 35677888888765 3577767777 999999843 555444 6677777543
No 46
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=99.73 E-value=1.4e-15 Score=160.70 Aligned_cols=210 Identities=16% Similarity=0.080 Sum_probs=135.6
Q ss_pred ccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcc----C-----ccccccccCEEEEecccC
Q 019218 110 LHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGS----G-----SACRSLFGGFVKWILGKE 180 (344)
Q Consensus 110 ~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~~~~----G-----s~a~s~~GG~v~~~~~~~ 180 (344)
.+++|++.++||.++|||||||..+|++.|++++++.++++++++++|..+| | +...+.+||++.+..+.+
T Consensus 725 ~G~~I~i~s~IP~GsGLGSSAAlavA~l~AL~~~~g~~ls~~ela~~A~~~E~~lhg~~g~qDq~~a~~GG~~~i~~~~~ 804 (974)
T PRK13412 725 SGIEITLLAAIPAGSGLGTSSILAATVLGAISDFCGLAWDKNEICNRTLVLEQLLTTGGGWQDQYGGVLPGVKLLQTGAG 804 (974)
T ss_pred CCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHCCCCchhhhhhHhcCCeEEEEecCC
Confidence 4689999999999999999999999999999999999999999999997553 2 236789999987654321
Q ss_pred CCCCCceEEEcCCCCCC-CCceEEEEEECCCCcccCchhhhhhhhh----hchhHHHHHhhhhHHHHHHHHHHHHhCCHH
Q 019218 181 GNGSDSLAVQLVDEEHW-NDLVIIIAVVSSRQKETSSTTGMRESVE----TSLLLQHRAKEVVPKRIVQMEEAIQNHDFS 255 (344)
Q Consensus 181 ~~~~~~~~~~l~~~~~~-~~l~~~vlv~~~~~~~~~s~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~al~~~D~~ 255 (344)
.. ......+++..... +++..-+++...+. +-++.+....++. ..+.+...+.+ +...+..+..+|.++|++
T Consensus 805 ~~-~~~~v~~L~~~~~~~~eLe~~LlL~yTGi-tR~T~~iV~~Vv~~~~~~~~~~~~~l~~-ig~La~ea~~ALe~gD~~ 881 (974)
T PRK13412 805 FA-QSPLVRWLPDSLFTQPEYRDCHLLYYTGI-TRTAKGILAEIVRSMFLNSTAHLQLLHE-MKAHALDMYEAIQRGEFE 881 (974)
T ss_pred cc-cCcceeecCcchhhhhhccCcEEEEECCC-eeeHHHHHHHHHHHHHhCcHHHHHHHHH-HHHHHHHHHHHHHcCCHH
Confidence 11 11123334321000 12222233334443 2234443322221 11222333443 466788999999999999
Q ss_pred HHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCCCcEEE-eecC-Cc-hHHHHHHH
Q 019218 256 SFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRCYE-FCDL-KH-IFVLSILS 332 (344)
Q Consensus 256 ~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGpt~~~~-~~~~-~~-~~~~~~l~ 332 (344)
.||++|..++..++++.... -.|...++++.+ + .|++|++.| |||.++|++ ++++ +. +++.++|+
T Consensus 882 ~LG~LMn~~w~ll~~L~~GV------Snp~LD~Li~~A---~--~gAlGaKLT-GAGGGGcvI~Lak~~~~a~~I~~~L~ 949 (974)
T PRK13412 882 EFGRLVGKTWEQNKALDSGT------NPAAVEAIIELI---K--DYTLGYKLP-GAGGGGYLYMVAKDPGAAERIRKILT 949 (974)
T ss_pred HHHHHHHHHHHHHHhccCCC------CCHHHHHHHHHH---H--cCCcEEEec-ccCcccEEEEEECChhhHHHHHHHHH
Confidence 99999999999988873211 234455555554 2 367766666 999999853 4432 22 56777776
Q ss_pred HH
Q 019218 333 AS 334 (344)
Q Consensus 333 ~~ 334 (344)
+.
T Consensus 950 ~~ 951 (974)
T PRK13412 950 EN 951 (974)
T ss_pred hc
Confidence 64
No 47
>PLN02521 galactokinase
Probab=99.72 E-value=6.2e-15 Score=147.98 Aligned_cols=281 Identities=14% Similarity=0.166 Sum_probs=167.7
Q ss_pred EEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEe---cCcc----cC--------C
Q 019218 10 VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWL---NGKE----IS--------L 74 (344)
Q Consensus 10 ~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i---~g~~----~~--------~ 74 (344)
..++||--+-| .|.|-+-|..| .|.+|++ .++.+.+...++ ...+.+ +... .. .
T Consensus 49 ~~~~APGRVnL---iGEHtDy~gg~---vLp~AI~---~~~~v~~~~~~~--~~~i~i~s~~~~~~~~~~~~~~~~~~~~ 117 (497)
T PLN02521 49 LFARSPGRVNL---IGEHIDYEGYS---VLPMAIR---QDTIVAIRRAEG--SKKLRIANVNDKYTTCTFPADPDQEVDL 117 (497)
T ss_pred EEEECCceEEE---eccceeecCCe---EEEEEEc---CcEEEEEEEcCC--CCEEEEEECCCCCCceeeecCccccccc
Confidence 45778888877 48887766655 9999999 778777776542 122332 1110 00 0
Q ss_pred C----cchH----HHHHHHHHHHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCC
Q 019218 75 G----GGRY----QNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNL 146 (344)
Q Consensus 75 ~----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~ 146 (344)
. .+.+ ..+++.+++.... ++ +..+++|.++++||+++|||||||..+|++.|++++++.
T Consensus 118 ~~~~W~nYv~~~~~gv~~~l~~~~~~---------~~----~~~g~~i~i~s~IP~gsGLgSSAA~~vA~~~al~~~~~~ 184 (497)
T PLN02521 118 ANHKWGNYFICGYKGVFEFLKSKGVD---------VG----PPVGLDVVVDGTVPTGSGLSSSAALVCSAAIAIMAALGL 184 (497)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhccc---------cC----CCCCeEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCC
Confidence 0 1122 2233333332110 00 124799999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhccCc---------ccccccc--CEEEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCC-Cc--
Q 019218 147 KENQSQLSAIARQGSGS---------ACRSLFG--GFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSR-QK-- 212 (344)
Q Consensus 147 ~ls~~el~~lA~~~~Gs---------~a~s~~G--G~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~-~~-- 212 (344)
++++++++++|.++|.. .+.|++| |.+++..... ....+++.+ +++.++++..... .+
T Consensus 185 ~l~~~~la~la~~~E~~~g~~~g~mDq~as~~g~~g~al~~d~~~-----l~~~~v~~p---~~~~~vv~~s~v~~~k~~ 256 (497)
T PLN02521 185 NFTKKEVAQFTCKCERHIGTQSGGMDQAISIMAQQGVAKLIDFNP-----VRATDVQLP---AGGTFVIANSLAESNKAV 256 (497)
T ss_pred CCCHHHHHHHHHHHhCccCCCCChHHHHHHHhcCCCcEEEEecCC-----CceEEeecC---CCcEEEEEECCCcccccc
Confidence 99999999999888652 2668898 7765432210 113344321 3455444331100 00
Q ss_pred ccCc---------hhhhhhhhhh------------c--------------------------------------------
Q 019218 213 ETSS---------TTGMRESVET------------S-------------------------------------------- 227 (344)
Q Consensus 213 ~~~s---------~~~~~~~~~~------------~-------------------------------------------- 227 (344)
...+ +.+.+ .+.+ .
T Consensus 257 ~a~~~Yn~R~~ec~~Aa~-~L~~~~~~~~~~~~~~~~~Lrd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~~~~ 335 (497)
T PLN02521 257 TAATNYNNRVVECRLAAI-VLAVKLGMSAEEAISKVKTLSDVEGLCVSFAGSHGSSDPAVAVKELLHEGPYTAEEIEEIL 335 (497)
T ss_pred cccccccHHHHHHHHHHH-HHHhhcCCcchhcccccCCHHHHHHHHhhhcccccchhhHHHhhhhhccccCCHHHHHHHh
Confidence 0000 00011 1100 0
Q ss_pred ------------------------hhH---HHHHhhhhHHHHHHHHHHHHhC-----CHHHHHHHHHHhhhHHhhhhccC
Q 019218 228 ------------------------LLL---QHRAKEVVPKRIVQMEEAIQNH-----DFSSFAQLTCADSNQFHAVCLDT 275 (344)
Q Consensus 228 ------------------------~~~---~~~~~~~~~~~~~~l~~al~~~-----D~~~l~~~~~~d~~~lh~~~~~~ 275 (344)
..+ ...+.+ ..++..++.++.++ ++..||++|..++..|...+.-
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ra~Hvv~E--~~RV~~~~~al~~~~~~~~~~~~lg~lm~~sh~slr~~~~v- 412 (497)
T PLN02521 336 GESLTSIFKNSPTSLAVLKAAKHFKLHQRAVHVYSE--AKRVHAFRDTVSSSLSEEEKLKKLGDLMNESHYSCSVLYEC- 412 (497)
T ss_pred CCcHHHHhhccccccccccccchhHHhhhhhheecH--HHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHhhccCC-
Confidence 000 001112 45678888998876 3999999999887766654322
Q ss_pred CCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCCCcEEE-eecCCc-hHHHHHHHHHhhh
Q 019218 276 SPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRCYE-FCDLKH-IFVLSILSASARE 337 (344)
Q Consensus 276 ~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGpt~~~~-~~~~~~-~~~~~~l~~~~~~ 337 (344)
-.|....|.+.+++ .|++|+.+| |||.++|++ +++.+. +++.+.+++...+
T Consensus 413 ------S~~elD~lv~~a~~----~Ga~GaRlt-GaG~GG~~i~lv~~~~~~~~~~~l~~~y~~ 465 (497)
T PLN02521 413 ------SCPELEELVKVCRD----NGALGARLT-GAGWGGCAVALVKEAIVPQFILALKEKFYK 465 (497)
T ss_pred ------CcHHHHHHHHHHHh----cCCcEEEEC-CCCCCeEEEEEECHHHHHHHHHHHHHHHHh
Confidence 33555666666554 599877777 999999853 555544 5677777665543
No 48
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=99.67 E-value=1.6e-14 Score=131.96 Aligned_cols=278 Identities=17% Similarity=0.129 Sum_probs=164.3
Q ss_pred EEEecceeEeeeecccccCCCCCCCC------CeeEEEeCCCCceeEEEEEEcCCCCcceEEec--Ccc-c----CCCc-
Q 019218 11 TAQTPTNIAVIKYWGKRDETLILPVN------DSISVTLDPDHLCTTTTVAVSPSFDQDRMWLN--GKE-I----SLGG- 76 (344)
Q Consensus 11 ~~~a~~nial~ky~Gk~d~~~~~P~~------dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~--g~~-~----~~~~- 76 (344)
..+||--|++. -|=-| +|.| -.+..|+| .|..++++... +++|.++ -.. + ...+
T Consensus 3 i~raPLRItfg--GGGTD----vepy~~k~GGaVlnatId---ky~y~~i~~~~---d~~I~~~~~~~~~v~~~~~~~h~ 70 (333)
T COG2605 3 ISRAPLRITFG--GGGTD----VEPYCSKHGGAVLNATID---KYIYVTIEKGF---DDEIRVRYDRTEFVKSYLENEHK 70 (333)
T ss_pred ccccceEEEec--CCCcC----chHHHHhcCCEEEEeeee---eEEEEEEccCC---CceEEEecchHHhhhhhHhhcCc
Confidence 34578888774 34333 2221 25778998 68888886543 3455554 111 1 1112
Q ss_pred chHHHHHHHHHHHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHH
Q 019218 77 GRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAI 156 (344)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~l 156 (344)
..+..++++. .++..+ ...++|...+++|.++|||||||..||++.|++.+-|..+++.+|++.
T Consensus 71 ~~~~~~l~r~--~l~~~g--------------~~~~el~~~~D~P~GSGLGSSSa~vvaLl~a~~~~kg~~~~~~~LA~e 134 (333)
T COG2605 71 PLVVESLKRD--FLEFNG--------------GTPIELHTQSDAPPGSGLGSSSAFVVALLNALHAWKGESLGPYELARE 134 (333)
T ss_pred hHHHHHHHHH--HHhhcC--------------CCceEEEEecCCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 3344444431 233310 234899999999999999999999999999999999999999999999
Q ss_pred HHhccCc----------cccccccCEEEEecccCCCCCCceEEEcCCCCCC-CCc--eEEEEEECCCCcccCchhhhhhh
Q 019218 157 ARQGSGS----------ACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHW-NDL--VIIIAVVSSRQKETSSTTGMRES 223 (344)
Q Consensus 157 A~~~~Gs----------~a~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~-~~l--~~~vlv~~~~~~~~~s~~~~~~~ 223 (344)
|..+|.. -=++.||||-...-.. + .++...+++....+ .++ +++++.. +. +-.|+++....
T Consensus 135 Ay~IER~~l~~~gG~QDqYaaA~GGFnfMEf~~--~-~~V~v~pL~i~~e~~~Ele~~~lL~yT--Gi-~R~Ss~V~~dQ 208 (333)
T COG2605 135 AYEIEREDLKIVGGKQDQYAAAFGGFNFMEFRG--N-GEVVVNPLRINRERTAELEARLLLYYT--GI-TRQSSEVIEDQ 208 (333)
T ss_pred HHHHHHHHhccccccccHHHHHhCCceEEEEcC--C-CcEEEeecccchhHHHHHHhceEEEEe--cc-ccchhHHHHHH
Confidence 9888642 1346799996543221 1 12445555431111 122 3344333 21 22344443322
Q ss_pred hhhchhH----HHHHhhhhHHHHHHHHHHHHhCCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhh
Q 019218 224 VETSLLL----QHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRS 299 (344)
Q Consensus 224 ~~~~~~~----~~~~~~~~~~~~~~l~~al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~ 299 (344)
+.....- .+...+ +...+..+..++..+|+..|++++..+... -.... -.+-+|...++.+.+. +
T Consensus 209 ~~~~~~~~~~~~e~~~~-mk~~A~~~~~al~~nd~~~f~~~l~~gW~~-KK~ls-----~~ISN~~IDriy~~A~----~ 277 (333)
T COG2605 209 VRNVVDGDEETLEALHE-MKALAYEMKDALVRNDIPEFGQILDRGWEA-KKKLS-----SRISNDAIDRIYELAL----K 277 (333)
T ss_pred HHHhhcccHHHHHHHHH-HHHHHHHHHHHHHhcchHHHHHHHHhHHHh-hhhhc-----cCcCcHHHHHHHHHHH----h
Confidence 2221111 112222 355678899999999999999998765332 21111 1234444555555544 4
Q ss_pred cCCceEEEEecCCCCcEE-EeecCCc-hHHHHHHHHH
Q 019218 300 VGSPQVCSFFAALSGRCY-EFCDLKH-IFVLSILSAS 334 (344)
Q Consensus 300 ~g~~~~~~~sgAGpt~~~-~~~~~~~-~~~~~~l~~~ 334 (344)
.|+++++ ++|||.++++ ++|+... .++.++|...
T Consensus 278 ~GA~~gK-l~GaG~gGFllf~~~p~k~~~l~r~l~~~ 313 (333)
T COG2605 278 NGAYGGK-LSGAGGGGFLLFFCDPSKRNELARALEKE 313 (333)
T ss_pred cCchhce-eeccCCccEEEEEeCccchHHHHHHHHHh
Confidence 7998555 5599999985 4666544 7777777543
No 49
>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism]
Probab=99.63 E-value=2.7e-13 Score=126.68 Aligned_cols=197 Identities=18% Similarity=0.221 Sum_probs=126.3
Q ss_pred EEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCC--------CHH---HHHHHHHhcc----C-----ccccccccC
Q 019218 112 LHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKE--------NQS---QLSAIARQGS----G-----SACRSLFGG 171 (344)
Q Consensus 112 v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~l--------s~~---el~~lA~~~~----G-----s~a~s~~GG 171 (344)
++|.+.+..|+|+|||||||..|+++.++..+.|.-= +.+ -+-+.|.++| | +.+-|.|||
T Consensus 132 ~~v~v~SelP~GaGLGSSAa~sv~lAtall~~~g~i~~p~~~~~~~e~~l~Li~~WAf~gE~~iHGtpSGiDnaV~t~Gg 211 (397)
T KOG1511|consen 132 LTVVVDSELPLGAGLGSSAAISVALATALLRLAGLIPPPGSNLSLAENDLALINKWAFEGEKCIHGTPSGIDNAVCTYGG 211 (397)
T ss_pred eEEEEeccCCCcCCcchhHHHHHHHHHHHHHHcccCCCCcchhccccchHHHHHHHHhccceeecCCCcccchhhhccCc
Confidence 7888899999999999999999999999998876321 112 3556777774 2 347799999
Q ss_pred EEEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCchhhhhhhhh----hch-hHHHHHhhhhHHHHHHHH
Q 019218 172 FVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVE----TSL-LLQHRAKEVVPKRIVQME 246 (344)
Q Consensus 172 ~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~l~ 246 (344)
++.+..+.. ...+. +.|.+++ ++++.. .+ .+|+.+.+.+. +.| ..+..++ .+..+.....
T Consensus 212 ~i~f~kg~~-------~~~Lk---~~~~L~i--lltnTr-v~-RnTk~lVa~Vr~~~~kfPevi~~i~~-aid~is~ea~ 276 (397)
T KOG1511|consen 212 LISFKKGVE-------IESLK---HLPPLRI--LLTNTR-VP-RNTKALVAGVRELLEKFPEVIKAIFD-AIDEISLEAV 276 (397)
T ss_pred eEEeecCcc-------ceecc---cCCCceE--EEEccc-cC-ccHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHH
Confidence 998876531 33443 3466764 444543 22 24555543322 222 1222333 3455666777
Q ss_pred HHHHh----CCHH---HHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCCCcEEE-
Q 019218 247 EAIQN----HDFS---SFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRCYE- 318 (344)
Q Consensus 247 ~al~~----~D~~---~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGpt~~~~- 318 (344)
..+.+ .+.. .|.+++..|+++|.+++++. | ....++....+ .|.. .+.| |||.++|.+
T Consensus 277 ~il~~e~~~~~~~~Eq~L~eLi~iNq~LL~alGVsH-~-------~le~v~~~t~k----~gi~-sKLT-GAGgGGc~it 342 (397)
T KOG1511|consen 277 WILQRENDEFSSPKEQKLEELIRINQDLLDALGVSH-P-------SLELVCTTTRK----LGIH-SKLT-GAGGGGCVIT 342 (397)
T ss_pred HHHhcccccCCCcHHHHHHHHHHHhHHHHHHhCCCc-H-------HHHHHHHHHHH----hCcc-eecc-cCCCCceEEE
Confidence 77773 3333 58999999999999999963 2 34555555443 6774 7888 999999943
Q ss_pred eecCCc-hHHHHHHHHHhhh
Q 019218 319 FCDLKH-IFVLSILSASARE 337 (344)
Q Consensus 319 ~~~~~~-~~~~~~l~~~~~~ 337 (344)
+.+++. +++....++..+-
T Consensus 343 lL~~~~~qe~i~~~ke~L~s 362 (397)
T KOG1511|consen 343 LLKPGTEQEQIDKWKEELES 362 (397)
T ss_pred EECCCCchHHHHHHHHHHHh
Confidence 444433 5566666655443
No 50
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.
Probab=99.56 E-value=2.3e-12 Score=127.48 Aligned_cols=233 Identities=12% Similarity=0.069 Sum_probs=137.7
Q ss_pred cchHHHHHHHHHHHccccccccccccccccccccccEEEEEeeCC-----------------C--------Ccccccchh
Q 019218 76 GGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNF-----------------P--------TAAGLASSA 130 (344)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~I-----------------P--------~~~GLGSSa 130 (344)
+..+..++.....++.... +++..++...++|.++++. + ...||||||
T Consensus 87 n~fv~~ai~~~~~y~~~~~-------~~~~~l~~~~itI~sd~d~ySq~~~~~~~~~~~~f~~~~~~~~e~~K~GLGSSA 159 (454)
T TIGR01219 87 NPFIQYAIAAVHLYFDKES-------LHKLLLQGLDITILGDNAYYSQPESLGTLAPFASITFNAAEKPEVAKTGLGSSA 159 (454)
T ss_pred ChHHHHHHHHHHHHHHhcc-------ccccccCceEEEEEecCCcccccchhcccccccccccccccCCCccccCccHHH
Confidence 4456677777776664320 1111134456667666651 1 249999999
Q ss_pred hhHHHHHHHHHHHhCCCC-------------CHHHHHHHHH------hc-cC---ccccccccCEEEEecccCCC-----
Q 019218 131 AGFACLVFSLAKLMNLKE-------------NQSQLSAIAR------QG-SG---SACRSLFGGFVKWILGKEGN----- 182 (344)
Q Consensus 131 A~~vA~i~Al~~l~~~~l-------------s~~el~~lA~------~~-~G---s~a~s~~GG~v~~~~~~~~~----- 182 (344)
|+++|++.|+..+++..+ +.+.+.++|. ++ -| +++.|+|||+ +|.......
T Consensus 160 AvtVa~v~ALl~~~~~~~~~~~~~~~~~~~~~~~~i~kLA~~ah~~~qGk~GSG~DvAaavyGgi-~Y~rfd~~~l~~~~ 238 (454)
T TIGR01219 160 AMTTALVAALLHYLGVVDLSDPDKEGKFGCSDLDVIHNLAQTAHCLAQGKVGSGFDVSAAVYGSQ-RYRRFSPELISFLQ 238 (454)
T ss_pred HHHHHHHHHHHHHhCCcccccccccccccccCHHHHHHHHHHHHHhhcCCCCCchhhhhhhcCce-EEEecChhhhhhhh
Confidence 999999999999999887 6777777774 33 13 3588999995 544321110
Q ss_pred ---CC-------------Cc--eEEEcCCCCCCCCceEEEEEECCCCcccCchhhhhhhhhhchhHHHHHhhhhHHHHHH
Q 019218 183 ---GS-------------DS--LAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQ 244 (344)
Q Consensus 183 ---~~-------------~~--~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (344)
+. +| ...++.. .+++++++. ..+ .+ ++|..|...+.. .++..... +...+..
T Consensus 239 ~~~~~~~~~~~L~~~v~~~W~~~i~~l~l---P~~l~Llvg--dtg-~~-ssT~~lV~~V~~--~~~~~p~~-s~~i~~~ 308 (454)
T TIGR01219 239 VAITGLPLNEVLGTIVKGKWDNKRTEFSL---PPLMNLFMG--DPG-GG-SSTPSMVGKVKK--WQMSDPEE-SRENWQN 308 (454)
T ss_pred ccccccchhhhHHHHhccCCCCceeeccC---CCCCEEEEE--cCC-CC-cCcHHHHHHHHH--HHHHCHHH-HHHHHHH
Confidence 00 00 1112211 034554433 332 22 455556543321 11111111 1222222
Q ss_pred HHH----------------------------HHHhC--------CHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHH
Q 019218 245 MEE----------------------------AIQNH--------DFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHR 288 (344)
Q Consensus 245 l~~----------------------------al~~~--------D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~ 288 (344)
|.. .|..+ |+..+.+.+..++..|.+++. ..++.++.|...+
T Consensus 309 l~~aN~~~~~~l~~l~~~~~~~~~~y~~~~~~l~~~~~~~~~~~~~~~i~~~i~~~R~~Lr~~~~--~sgv~IEp~~~t~ 386 (454)
T TIGR01219 309 LSDANLELETKLNDLSKLAKDHWDVYLRVIKVLTSEKCVLHATEELLEAREAMLRIRRLMRQITE--EASVDIEPESQTQ 386 (454)
T ss_pred HHHHHHHHHHHHHhhhhhhccccchhhhhhhhhccccchhcccccHHHHHHHHHHHHHHHHHhhH--hcCCcccCHHHHH
Confidence 222 25555 889999999999999999888 4588899999999
Q ss_pred HHHHHHHHHhhcCCceEEEEecCCCCcEEE-eecCCchHHHHHHHH
Q 019218 289 IISYVERWNRSVGSPQVCSFFAALSGRCYE-FCDLKHIFVLSILSA 333 (344)
Q Consensus 289 l~~~v~~~~~~~g~~~~~~~sgAGpt~~~~-~~~~~~~~~~~~l~~ 333 (344)
|++.+.++ .|++ ++-++|||..=|++ +..++. .+.+.+..
T Consensus 387 Lld~~~~~---~Gvl-~a~vpGAGGgDa~~~l~~~~~-~~~~~~~~ 427 (454)
T TIGR01219 387 LLDSTMSL---EGVL-LAGVPGAGGFDAIFAITLGDV-DSGTKLTQ 427 (454)
T ss_pred HHHHHhhc---CCee-EeecCCCCccceEEEEecCCh-HHHHHHHH
Confidence 99999874 4776 56778999987743 443332 33444433
No 51
>PLN02865 galactokinase
Probab=99.55 E-value=8.8e-12 Score=122.82 Aligned_cols=285 Identities=14% Similarity=0.050 Sum_probs=165.0
Q ss_pred EEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcce-----------EEecCcc--c-----
Q 019218 11 TAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDR-----------MWLNGKE--I----- 72 (344)
Q Consensus 11 ~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~-----------i~i~g~~--~----- 72 (344)
.++||-=+-|| |.|=| |+ +..++.+|++ .++.+.+...++. ..+ +.++... .
T Consensus 32 ~~~APGRVnlI---GEHtD-Yn--gG~VLp~AI~---~~~~va~~~~~~~-~i~v~s~~~~~~~~~~~~~~~~~~~~~~~ 101 (423)
T PLN02865 32 VVVSPYRICPL---GAHID-HQ--GGTVSAMTIN---KGILLGFVPSGDP-EVLLRSAQFEGEVRFRVDEIQHPIANVSS 101 (423)
T ss_pred EEEcCcceecc---ccccc-CC--CCeEEeEEee---ccEEEEEEECCCC-EEEEEECCCCCceEEeccccccccccccc
Confidence 46788777774 65543 44 4669999999 6777666554321 111 1111100 0
Q ss_pred C-CC----cchHHHHHHHHHHHccccccccccccccccccccccEEEEEeeCC-CCcccccchhhhHHHHHHHHHHHhCC
Q 019218 73 S-LG----GGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNF-PTAAGLASSAAGFACLVFSLAKLMNL 146 (344)
Q Consensus 73 ~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~I-P~~~GLGSSaA~~vA~i~Al~~l~~~ 146 (344)
. .. .+.++.++..+.+ .+.. ...++.+-+..++ |.++||+||||..+|++.|++.+++.
T Consensus 102 ~~~~~~~W~~Yv~gv~~~l~~-~g~~--------------~~~G~~~~v~g~vpP~gsGLsSSAAl~va~~~al~~~~~~ 166 (423)
T PLN02865 102 DSKEESNWGDYARGAVYALQS-RGHA--------------LSQGITGYISGSEGLDSSGLSSSAAVGVAYLLALENANNL 166 (423)
T ss_pred cCCCCCCHHHHHHHHHHHHHH-cCCC--------------CCCceEEEEECCCCCCCCcccHHHHHHHHHHHHHHHHhCC
Confidence 0 01 1234445555543 2320 1257888889999 68999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcc--------C--ccc---cccccCEEEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcc
Q 019218 147 KENQSQLSAIARQGS--------G--SAC---RSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKE 213 (344)
Q Consensus 147 ~ls~~el~~lA~~~~--------G--s~a---~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~ 213 (344)
+++++++++++.+.| | +-. .+-.|+++..+..... ....+++.+.+-++-.+.+++++.+.+.
T Consensus 167 ~~~~~~la~~a~~~E~~~~G~~~G~mDQ~as~~~~~g~~~~iDf~~l~----~~~vpl~~~~~~~~~~~~ivv~~s~~~h 242 (423)
T PLN02865 167 TVSPEDNIELDRLIENEYLGLRNGILDQSAILLSRYGCLTFMDCKTLD----HKLVSLQFQQPGGEKPFKILLAFSGLRH 242 (423)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCccccHHHHHhcccCceEEEEccCCC----cceeecCcccccCCCCeEEEEEeCCCch
Confidence 999999999997665 3 212 2557788876643211 1122332100000112334444543211
Q ss_pred cCc---h---------hhhhhhh------------hh---ch--------------hHHHHHhhhhHHHHHHHHHHHHhC
Q 019218 214 TSS---T---------TGMRESV------------ET---SL--------------LLQHRAKEVVPKRIVQMEEAIQNH 252 (344)
Q Consensus 214 ~~s---~---------~~~~~~~------------~~---~~--------------~~~~~~~~~~~~~~~~l~~al~~~ 252 (344)
..+ . .+.+.+. .. .. .....+.+ ..++...+.+|+++
T Consensus 243 ~l~~~~~Yn~Rr~Ec~~aa~~l~~~~~~~~~~~~Lr~~~~~~~~~~~~~l~~~l~~Ra~Hv~~E--~~Rv~~~~~al~~~ 320 (423)
T PLN02865 243 ALTNKPGYNLRVSECQEAARFLLEASGNDELEPLLCNVEPEVYEAHKCKLEAVLARRAEHYFSE--NMRVIKGVEAWASG 320 (423)
T ss_pred hhcccchhhHHHHHHHHHHHHHHHhcCCccchhhhhcCCHHHHHHHHhhcCHHHHHHHHHHHHH--HHHHHHHHHHHHhC
Confidence 101 0 1111110 00 00 00011122 45678999999999
Q ss_pred CHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCCCcEEE-eecCCc-hHHHHH
Q 019218 253 DFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRCYE-FCDLKH-IFVLSI 330 (344)
Q Consensus 253 D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGpt~~~~-~~~~~~-~~~~~~ 330 (344)
|++.|+++|...+..|...+.- -.|.+..+.+.+++ ..|++|+.+| |+|-++|++ +++++. +.+.+.
T Consensus 321 d~~~~g~lm~~sh~Slrd~yev-------S~~eld~lv~~a~~---~~Ga~GaR~t-GgGfGGc~vaLv~~~~~~~~~~~ 389 (423)
T PLN02865 321 NLEEFGKLISASGLSSIENYEC-------GCEPLIQLYEILLK---APGVYGARFS-GAGFRGCCVAFVDAEMAEEAASF 389 (423)
T ss_pred CHHHHHHHHHHhhhhHHhhccC-------CcHHHHHHHHHHHh---cCCCeEEEEe-ccCCccEEEEEEchhHHHHHHHH
Confidence 9999999997765555443332 24455666666554 3588877777 999999853 555544 667787
Q ss_pred HHHHhhh
Q 019218 331 LSASARE 337 (344)
Q Consensus 331 l~~~~~~ 337 (344)
+.+..++
T Consensus 390 v~~~Y~~ 396 (423)
T PLN02865 390 VRDEYEK 396 (423)
T ss_pred HHHHHHh
Confidence 7666654
No 52
>COG4542 PduX Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.52 E-value=3e-12 Score=114.97 Aligned_cols=238 Identities=13% Similarity=0.122 Sum_probs=151.6
Q ss_pred ccceeEEEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecCcccCCCcchHHHHH
Q 019218 4 EKWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCL 83 (344)
Q Consensus 4 ~~~~~~~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g~~~~~~~~~~~~~~ 83 (344)
..++|+++|.+|++-+=+- .|--... --=+++.++ +|+++++....+ +++.. ..+..++.
T Consensus 8 ~~~~~~~~A~cpAs~GELl-QG~~~g~-----~~Lvs~PIa---~~s~v~~~~~s~--~~s~~---------~t~a~~~~ 67 (293)
T COG4542 8 QPRVMVISAKCPASCGELL-QGSFNGS-----EKLVSFPIA---LFSEVTLFDRSG--KDSVN---------VTPAHKFK 67 (293)
T ss_pred CCCCcceeeecccchhhhh-eeeecCC-----ceEEEcchh---hhhheeeeccCC--Ccccc---------cchhHHHH
Confidence 3578999999999877531 2321111 113567787 899888854321 22111 22344566
Q ss_pred HHHHHHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCc
Q 019218 84 KEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGS 163 (344)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~~~~Gs 163 (344)
+....+++.. .....++.+.+.++||.|.||+||+|+++|++.|+++++|.+++..+|++++.++|.+
T Consensus 68 e~~la~~~~~------------~~~~~~i~l~lqSsIPvgKG~ASSTADl~At~~A~A~~l~~~l~es~iakLcv~iEPt 135 (293)
T COG4542 68 ENILARWGVT------------KLINTGIDLLLQSSIPVGKGMASSTADLVATARATARFLGRELRESEIAKLCVSIEPT 135 (293)
T ss_pred HHHHHHhCcc------------ceecCCeeEEEeccccccccccccHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhcCCc
Confidence 6666666642 1124568899999999999999999999999999999999999999999999999987
Q ss_pred cccccccCEEEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCchhhhhhhhhhchhHHHHHhhhhHHHHH
Q 019218 164 ACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIV 243 (344)
Q Consensus 164 ~a~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (344)
. .-+|-+.++++...+. +.+-+ ...|.+.++++ ... .++ .|..+++. |.....-+-..+ .....+
T Consensus 136 D-siiF~~~tlFd~r~g~-----~~~~~---g~~PpL~ilv~--e~~-~~v-~T~~y~q~-~r~e~~~~~~~e-~~~l~~ 200 (293)
T COG4542 136 D-SIIFDKATLFDQREGR-----VIEFL---GEMPPLHILVF--EGK-GTV-ETVDYNQP-PRGEKLLAPLAE-LGNLIN 200 (293)
T ss_pred c-ceecccceeehhccch-----HHHhc---CCCCceEEEEE--cCC-Cce-eeeeccCC-chhhhhhhhHHH-HHHHHH
Confidence 6 4457778887643211 11111 12366664443 332 222 23333321 211111111111 244567
Q ss_pred HHHHHHHhCCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHH
Q 019218 244 QMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWN 297 (344)
Q Consensus 244 ~l~~al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~ 297 (344)
....|+..+|..+||++++.+ -..||. ....|.+.++.+.+++..
T Consensus 201 ~v~~A~~~~~~~~lG~AAT~S-Av~~Q~--------~LPK~~~~~lL~l~e~~~ 245 (293)
T COG4542 201 LVEKALKVGDPKLLGEAATLS-AVKNQD--------RLPKPGLNELLRLVEETC 245 (293)
T ss_pred HHHHHHccCCHHHHHHHHHHH-HHhhcc--------ccCchhHHHHHHHHHHhc
Confidence 888899999999999998764 444542 245678899999999844
No 53
>COG1829 Predicted archaeal kinase (sugar kinase superfamily) [General function prediction only]
Probab=99.46 E-value=3.1e-11 Score=110.03 Aligned_cols=242 Identities=18% Similarity=0.174 Sum_probs=152.0
Q ss_pred eEEEEEecceeEeeeecccccCCCCCCCCCeeE--EEeCCCCceeEEEEEEcCCCCcceEEecCcccCCCcchHHHHHHH
Q 019218 8 LMVTAQTPTNIAVIKYWGKRDETLILPVNDSIS--VTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKE 85 (344)
Q Consensus 8 ~~~~~~a~~nial~ky~Gk~d~~~~~P~~dsig--lal~~~~l~~~~~v~~~~~~~~~~i~i~g~~~~~~~~~~~~~~~~ 85 (344)
|.+++++|.+|.-+-+--++++..+ ..|+| ++|+ -+++++|...+ +.++.+||++.+.. ....+++
T Consensus 1 ~~~~~fvP~hITgfF~pv~~~~p~~---SGSiGaGv~l~---~gv~v~v~~~~---~~~v~~Ng~~~d~~--~~~~v~e- 68 (283)
T COG1829 1 MAVRLFVPGHITGFFVPVIGKDPLK---SGSIGAGVALE---RGVTVEVRFGE---GTGVRLNGKKIDLP--ITRKVIE- 68 (283)
T ss_pred CCceEeccceeEEEEEeccCCCCcc---CCCcceeEEec---CceeEEEEecC---CceEEECCeeccch--hHHHHHH-
Confidence 4578999999999855566666554 34555 7888 57888887765 45789999755442 2333444
Q ss_pred HHHHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHhc-----
Q 019218 86 IRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQG----- 160 (344)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~~~----- 160 (344)
+++. .++.|+++.++|+|+|+|-|+|++.+++.|++..++++ .++..++|...
T Consensus 69 ---~L~~-----------------~~~~v~~~~~~P~G~G~G~Sga~AL~~Ala~a~~~~~~--~~~a~~~AH~aEV~~g 126 (283)
T COG1829 69 ---KLGP-----------------DGVGVRIESPVPLGCGYGVSGAGALGTALALAEELGLG--EESAARIAHVAEVENG 126 (283)
T ss_pred ---HhCc-----------------cCcceEEEecCCCCcccchhHHHHHHHHHHHHhhcCCC--HHHHHHHHHHHHHHcC
Confidence 3332 34678889999999999999999999999999999876 67788888654
Q ss_pred --cCccccccccCEEEEe-cccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCchhhhhhhhhhchhHHHHHhhh
Q 019218 161 --SGSACRSLFGGFVKWI-LGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEV 237 (344)
Q Consensus 161 --~Gs~a~s~~GG~v~~~-~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 237 (344)
-|++.+-.+||+++.. .|.+ ..-..++++. |+++++.. +.+ +.+|++... ... ...++
T Consensus 127 tGLGDVvAq~~GGlViR~~pG~P---g~~~vd~Ip~----~~~~V~~~--~~g--~l~T~~vi~----~~~--~~~i~-- 187 (283)
T COG1829 127 TGLGDVVAQYTGGLVIRVKPGGP---GEGEVDRIPV----PGLRVITI--SLG--ELSTKSVIT----DEV--VRKIN-- 187 (283)
T ss_pred CCchHHHHHhcCcEEEEecCCCC---CeEEEEEeec----CCceEEEE--Ecc--cccHHHhhh----hHH--HHHHH--
Confidence 3578888999987643 2211 1133667753 55664443 333 344544422 111 11122
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCCCcEE
Q 019218 238 VPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRCY 317 (344)
Q Consensus 238 ~~~~~~~l~~al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGpt~~~ 317 (344)
..-...+.+-|++-+++.|.+...+ -=..++. ...++.+.+++..+ .|.+++++.| -|-||+
T Consensus 188 -~~g~~~l~ellk~Ptle~f~~~a~~---FA~~~Gl-----------~~~~v~~~~~~~~~-~g~l~as~~m-lg~tVF- 249 (283)
T COG1829 188 -EAGKRALAELLKNPTLENFMEEARE---FARRTGL-----------MSEEVKEAAEALHS-VGGLGASMAM-LGVTVF- 249 (283)
T ss_pred -HHHHHHHHHHHhCCCHHHHHHHHHH---HHHHhCc-----------CHHHHHHHHHHhhh-cCchhHhHHh-hCcEEE-
Confidence 2334566667788999999776532 1112222 12556666665543 3554455554 677877
Q ss_pred Eee
Q 019218 318 EFC 320 (344)
Q Consensus 318 ~~~ 320 (344)
++.
T Consensus 250 a~~ 252 (283)
T COG1829 250 ALS 252 (283)
T ss_pred Eec
Confidence 444
No 54
>PTZ00290 galactokinase; Provisional
Probab=99.45 E-value=1.3e-10 Score=115.67 Aligned_cols=288 Identities=11% Similarity=0.070 Sum_probs=155.5
Q ss_pred EEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEe--cCc-cc-------CCCc---
Q 019218 10 VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWL--NGK-EI-------SLGG--- 76 (344)
Q Consensus 10 ~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i--~g~-~~-------~~~~--- 76 (344)
+.++||-=+-|| |.+= .|| +...+.+|++ .++.+.+..........+.+ +.. .. ....
T Consensus 38 ~~~~APGRVnLI---GEHt-DYn--gG~VLp~AId---~~~~va~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~W 108 (468)
T PTZ00290 38 LFTFAPGRVNFI---GEHV-DYM--GGYVCPAAVL---EGCHILVGRVKHFCDHKLRFATETDEHFVLDHLGGAKHNKAW 108 (468)
T ss_pred EEEeccceeeec---cccc-ccC--CCeeeecccc---CcEEEEEeecCCCCCCeEEEEECCCceeecCcccccCCcccH
Confidence 567888888886 4333 244 5669999999 67776664321100122222 110 00 0111
Q ss_pred -chHHHHHHHHHHHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCC---------
Q 019218 77 -GRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNL--------- 146 (344)
Q Consensus 77 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~--------- 146 (344)
+.++.++..+.+..+. ++.++ +..++++.+.++||.++||+||||..+|++.|++.++++
T Consensus 109 ~nYv~gv~~~~l~~~g~--------~~~~~--~~~G~d~~i~gdVP~GaGLSSSAAleva~~~al~~~~~~~~~~~~~~~ 178 (468)
T PTZ00290 109 TTFVRGAATLRLNRLGV--------AIDAP--SLQGVCMVVHGTLPMGAGMSASASFGVALLNAINTVVTRRYKGCPTSP 178 (468)
T ss_pred HHHHHHHHHHHHHHhCC--------CcccC--CCCCeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhhhcccccccc
Confidence 2344444433333332 11110 124789999999999999999999999999999998743
Q ss_pred --------CCCH---HHHHHHHHhcc----C------cccccccc---CEEEEecccCCCCCCceEEEcCCCCCC--CCc
Q 019218 147 --------KENQ---SQLSAIARQGS----G------SACRSLFG---GFVKWILGKEGNGSDSLAVQLVDEEHW--NDL 200 (344)
Q Consensus 147 --------~ls~---~el~~lA~~~~----G------s~a~s~~G---G~v~~~~~~~~~~~~~~~~~l~~~~~~--~~l 200 (344)
.+++ .+|+.++.+.| | +-..|.+| .++..+.... ..+.++.. .. +++
T Consensus 179 ~~~~~~~~~~~~~~~~~lA~~aqraEn~~vGv~cGiMDQ~asa~g~~~~al~iD~~~l------~~~~v~l~-~~~~~~~ 251 (468)
T PTZ00290 179 GRRYSILPPMSKEELIELAKQARRIETEFCGVNVGIMDQFISAFAEEDKFMFLDCKSL------TFESHDMT-PLLGDGA 251 (468)
T ss_pred ccccccccccCcccHHHHHHHHHHHHHhhcCCCcchhhHHHHHhCCCCcEEEEecCCC------eEEEeccC-CCCCCCc
Confidence 1343 56666675543 2 11446665 4445444321 13334310 11 234
Q ss_pred eEEEEEECCCCccc--Cc--------hhhhh---hhhhhc--------------------------hh------------
Q 019218 201 VIIIAVVSSRQKET--SS--------TTGMR---ESVETS--------------------------LL------------ 229 (344)
Q Consensus 201 ~~~vlv~~~~~~~~--~s--------~~~~~---~~~~~~--------------------------~~------------ 229 (344)
.++ +++...+.. .+ +.... +.+... .+
T Consensus 252 ~~v--V~nS~v~h~l~~s~~~~Yn~Rr~ece~a~~~L~~~~l~~~~~~Lrd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 329 (468)
T PTZ00290 252 CFL--LIDSMIKHDLLGGTAGMYNTVRSDQEGAQKKIGKHRYRGKPFTFSDLVRNPKKYTFDGDVVAFMESCKPLMTPGE 329 (468)
T ss_pred EEE--EEeCCCcchhccccchhhHHHHHHHHHHHHHhccccccchhhhHHHhhhccccccccccHHHHHHHhhhcCCHHH
Confidence 433 345431111 01 00000 111000 00
Q ss_pred ---HHHHHhhhhHHHHHHHHHHHH-------hCCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhh
Q 019218 230 ---LQHRAKEVVPKRIVQMEEAIQ-------NHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRS 299 (344)
Q Consensus 230 ---~~~~~~~~~~~~~~~l~~al~-------~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~ 299 (344)
....+.+ ..++..++.+|. ++|+..||++|..+|..|..-+.- -.|.+..+.+.+.+ .
T Consensus 330 ~~Ra~HVitE--n~RV~~a~~al~~~~~l~~~~~~~~lG~lm~~sh~sL~~~~~v-------S~~elD~lv~~~~~---~ 397 (468)
T PTZ00290 330 FERGTYNIME--QIRTLEFIKLNDPELPLSREERFRKAGEILNAGHQGMRDLMKI-------TTPELDFIHELINE---E 397 (468)
T ss_pred HHHHHHHhhH--HHHHHHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHHhcCC-------CcHHHHHHHHHHHH---h
Confidence 0011122 456777777774 566999999999998655543221 23455666665433 3
Q ss_pred cCCceEEEEecCCCCcEEE-eecCCc-hHHHHHHHHHhhhC
Q 019218 300 VGSPQVCSFFAALSGRCYE-FCDLKH-IFVLSILSASAREN 338 (344)
Q Consensus 300 ~g~~~~~~~sgAGpt~~~~-~~~~~~-~~~~~~l~~~~~~~ 338 (344)
.|++|+.+| |||.++|++ +++.+. +++.+.+++..+++
T Consensus 398 ~G~~GaRlT-GaG~GGc~i~Lv~~~~~~~~~~~v~~~y~~~ 437 (468)
T PTZ00290 398 KGVAGGRMM-GGGFGGCIILLLKKNAVDRVVAHVREKFKAR 437 (468)
T ss_pred CCCcEEEEe-cCCCceEEEEEechhhHHHHHHHHHHHHHHh
Confidence 688877777 999999853 555443 66777776665543
No 55
>PF00288 GHMP_kinases_N: GHMP kinases N terminal domain; InterPro: IPR006204 The galacto- (2.7.1.6 from EC), homoserine (2.7.1.39 from EC), mevalonate (2.7.1.36 from EC) and phosphomevalonate (2.7.4.2 from EC) kinases contain, in their N-terminal section, a conserved Gly/Ser-rich region which is probably involved in the binding of ATP [, ]. This group of kinases has been called 'GHMP' (from the first letter of their substrates).; GO: 0005524 ATP binding, 0016301 kinase activity, 0016310 phosphorylation; PDB: 3F0N_B 1PIE_A 2AJ4_A 1K47_E 3GON_A 2R3V_C 3HUL_A 1KVK_A 2R42_A 3D4J_A ....
Probab=99.30 E-value=2.4e-12 Score=94.71 Aligned_cols=59 Identities=34% Similarity=0.497 Sum_probs=52.9
Q ss_pred EEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcc---C-----ccccccccC
Q 019218 113 HIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGS---G-----SACRSLFGG 171 (344)
Q Consensus 113 ~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~~~~---G-----s~a~s~~GG 171 (344)
+|+++++||.++|||||||.++|++.+++++++.++++++|.+++.++| | +.+.|+|||
T Consensus 1 ~i~i~s~iP~~~GLgSSaa~~~a~~~a~~~~~~~~~~~~~l~~~a~~~e~~~g~~~g~d~~~~~~GG 67 (67)
T PF00288_consen 1 DIEIDSNIPPGSGLGSSAALAVALAAALNKLFGLPLSKEELAKLAQEAERYIGKPSGIDDAASAYGG 67 (67)
T ss_dssp EEEEEESSTTTSSSSHHHHHHHHHHHHHHHHTTTSSBHHHHHHHHHHHHHHCSSSHSHHHHHHHHCS
T ss_pred CeEEEccCCCCCcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcCCCChhhHHHHHhCc
Confidence 4677999999999999999999999999999999999999999998876 2 247788887
No 56
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=98.45 E-value=7.5e-07 Score=67.95 Aligned_cols=80 Identities=11% Similarity=0.056 Sum_probs=55.5
Q ss_pred HHHHHHhCCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecC--CCCcEEEeec-
Q 019218 245 MEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAA--LSGRCYEFCD- 321 (344)
Q Consensus 245 l~~al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgA--Gpt~~~~~~~- 321 (344)
|+.||.++|++.|++++..++.. +... ++..+.|...++++.+++ .|++ ++.+||| ||+++ ++++
T Consensus 1 m~~al~~~d~~~~~~~~~~~~~~--~~~~----~~~~~~~~i~~~~~~~~~----~Ga~-~~~~sGsG~G~~v~-~l~~~ 68 (85)
T PF08544_consen 1 MIKALAEGDLELLGELMNENQEN--EPEN----YREVLTPEIDELKEAAEE----NGAL-GAKMSGSGGGPTVF-ALCKD 68 (85)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--HHHH----HTTHHHHHHHHHHHHHHH----TTES-EEEEETTSSSSEEE-EEESS
T ss_pred CHHHHHCcCHHHHHHHHHHhhhh--cchH----HHHHcCHHHHHHHHHHHH----CCCC-ceecCCCCCCCeEE-EEECC
Confidence 67899999999999999876442 1100 223467777777777654 6876 6777799 99988 6663
Q ss_pred CCc-hHHHHHHHHHhh
Q 019218 322 LKH-IFVLSILSASAR 336 (344)
Q Consensus 322 ~~~-~~~~~~l~~~~~ 336 (344)
++. +++.+.+++.+.
T Consensus 69 ~~~~~~v~~~l~~~~~ 84 (85)
T PF08544_consen 69 EDDAERVAEALREHYK 84 (85)
T ss_dssp HHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHhCC
Confidence 233 668888876653
No 57
>KOG4644 consensus L-fucose kinase [Carbohydrate transport and metabolism]
Probab=97.56 E-value=0.0023 Score=63.40 Aligned_cols=192 Identities=11% Similarity=0.134 Sum_probs=102.9
Q ss_pred ccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHH-----------HHHHHHhccC--ccccccccCEEEEe
Q 019218 110 LHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQ-----------LSAIARQGSG--SACRSLFGGFVKWI 176 (344)
Q Consensus 110 ~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~e-----------l~~lA~~~~G--s~a~s~~GG~v~~~ 176 (344)
.+++|+..++.|.|+|||.|+-.+.-.+.|+.+..+.--..+. +-++.+.+.| +-+.+++.|+-.-.
T Consensus 690 ~GfeihT~SdLPHGSGLGTSSIlA~TaLaAi~~aagr~~gTeaLiHailHtvlrlEQilTTGGGWQDQ~G~im~GIK~gr 769 (948)
T KOG4644|consen 690 CGFEIHTSSDLPHGSGLGTSSILACTALAAICAAAGRADGTEALIHAILHTVLRLEQILTTGGGWQDQCGAIMEGIKKGR 769 (948)
T ss_pred CceEeeccccCCCCCCcchHHHHHHHHHHHHHHhhccccchhHhHHHHHHHHHHHHHHhhcCCchhhhccchhhhhhhcc
Confidence 5689999999999999999998888888888888775544332 2223344455 44778888874311
Q ss_pred cccCCCCCCceEEEcCCCCCC-C--CceEEEEEECCCCcccCchhhhhhhhhhc--hhHH---HHHhhh--hHHHHHHHH
Q 019218 177 LGKEGNGSDSLAVQLVDEEHW-N--DLVIIIAVVSSRQKETSSTTGMRESVETS--LLLQ---HRAKEV--VPKRIVQME 246 (344)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~~~-~--~l~~~vlv~~~~~~~~~s~~~~~~~~~~~--~~~~---~~~~~~--~~~~~~~l~ 246 (344)
.. .+.......+.+..++.+ . +-+..++. .+ | |.-.++++... .+|. +..+++ ....++.+.
T Consensus 770 ~r-ael~~~ie~eeiTipe~f~ekL~dhLLLVY--TG-K----TRLAkNLLQdViRn~far~~a~~Q~ah~l~~~tdecA 841 (948)
T KOG4644|consen 770 CR-AELNHGIEHEEITIPEEFREKLEDHLLLVY--TG-K----TRLAKNLLQDVIRNFFARCKATKQKAHKLAEATDECA 841 (948)
T ss_pred ch-hhccCCceeeeecCCHHHHHHHhhcEEEEE--eC-c----hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 00 000011112222221111 1 11222322 22 1 22233333321 1111 222221 233568888
Q ss_pred HHHHhCCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCCCcEEEe
Q 019218 247 EAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRCYEF 319 (344)
Q Consensus 247 ~al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGpt~~~~~ 319 (344)
..+++|.++++++.++..... .. .| .|+. .-++-.+++++...- ..|- ..+..|||.++++.+
T Consensus 842 egf~kGsl~LlgecL~~Yweq-Kk-~M--apgC--EPl~Vr~lldmLaph--~hge--sgw~AGAGGGGFiYL 904 (948)
T KOG4644|consen 842 EGFEKGSLELLGECLEHYWEQ-KK-FM--APGC--EPLNVRELLDMLAPH--KHGE--SGWAAGAGGGGFIYL 904 (948)
T ss_pred HHHhcCcHHHHHHHHHHHHHh-hh-cc--CCCC--CCCcHHHHHHHhccc--cccc--cchhccCCCCcEEEE
Confidence 999999999999988653221 11 11 1222 223567788876432 2453 334559999998644
No 58
>COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism]
Probab=97.34 E-value=0.087 Score=48.86 Aligned_cols=51 Identities=29% Similarity=0.426 Sum_probs=34.4
Q ss_pred ccccchhhhHHHHHHHHH-HH-hCCCCCH-HHHHHH---H---Hhc---cC-ccccccccCEEE
Q 019218 124 AGLASSAAGFACLVFSLA-KL-MNLKENQ-SQLSAI---A---RQG---SG-SACRSLFGGFVK 174 (344)
Q Consensus 124 ~GLGSSaA~~vA~i~Al~-~l-~~~~ls~-~el~~l---A---~~~---~G-s~a~s~~GG~v~ 174 (344)
-||||||++++.+.-.+. .+ .+.+++. .++-++ | +|+ +| ++++|+||+++.
T Consensus 108 tGlGSSAa~~tsLt~~lfls~~~~~nvd~k~eIhklaqiAhc~aQggIGSGfDiaaA~fGsiiy 171 (337)
T COG3890 108 TGLGSSAAVATSLTCGLFLSHANATNVDEKGEIHKLAQIAHCYAQGGIGSGFDIAAAIFGSIIY 171 (337)
T ss_pred CCCcchhHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhCCCCccchhhHhhhcceEE
Confidence 899999999999883333 22 4566776 444444 4 222 44 468999999976
No 59
>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism]
Probab=97.29 E-value=0.014 Score=57.81 Aligned_cols=76 Identities=13% Similarity=0.082 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCCCcEEE-eec-CCchHHHHHH
Q 019218 254 FSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRCYE-FCD-LKHIFVLSIL 331 (344)
Q Consensus 254 ~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGpt~~~~-~~~-~~~~~~~~~l 331 (344)
+..+|++|+..+..-|..+.-+ -|++.+|++.+++ .|.+++-+| |||.++|++ +.+ .+.+++.+.+
T Consensus 387 ~~~~g~LmneS~~Sc~~~yEcs-------cpel~qL~kiala----~g~~gaRlT-GaGwGGc~v~lvp~d~~~~~~~~~ 454 (489)
T KOG0631|consen 387 LADFGRLMNESHRSCDVLYECS-------CPELDQLCKIALA----NGGVGARLT-GAGWGGCTVALVPADLVDFAVAAL 454 (489)
T ss_pred HHHHHHHhhhhhHHHHHHHhcC-------CHhHHHHHHHHHh----cCCccceee-ccccccceeeeccccchHHHHHhh
Confidence 5567899999988888888765 3466888888776 465655555 999999953 455 3347788899
Q ss_pred HHHhhhCCcc
Q 019218 332 SASARENSYI 341 (344)
Q Consensus 332 ~~~~~~~~~~ 341 (344)
+..+++..+-
T Consensus 455 ~~~~Y~ka~~ 464 (489)
T KOG0631|consen 455 KEIYYEKAYP 464 (489)
T ss_pred hhhhhccccc
Confidence 8888886553
No 60
>KOG4519 consensus Phosphomevalonate kinase [Lipid transport and metabolism]
Probab=77.57 E-value=3.7 Score=39.30 Aligned_cols=55 Identities=4% Similarity=-0.051 Sum_probs=35.6
Q ss_pred HHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCCCcE
Q 019218 256 SFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRC 316 (344)
Q Consensus 256 ~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGpt~~ 316 (344)
++.++|..-+..|.+++.. ..+.++-|.-..|++-+..+ .|.+ .+-.=|||.==.
T Consensus 357 E~r~a~~~IRr~~r~it~e--a~vdIEP~~QT~lLD~~~sl---~GVl-~~gvPGAGGfDA 411 (459)
T KOG4519|consen 357 EAREAMLRIRRLMRQITEE--ASVDIEPESQTQLLDSTMSL---EGVL-LAGVPGAGGFDA 411 (459)
T ss_pred HHHHHHHHHHHHHHHHHHh--hCCCCCchhhhhHhhhhhcc---cceE-EecccCCCCcce
Confidence 3445555555677777774 46666777778888888774 4776 444448887543
No 61
>KOG3282 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.61 E-value=79 Score=27.82 Aligned_cols=63 Identities=8% Similarity=0.057 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCCCc
Q 019218 239 PKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGR 315 (344)
Q Consensus 239 ~~~~~~l~~al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGpt~ 315 (344)
|..+.....++. +|.++|.+.- |+. +|.+..-.++..+++++..+.+ ..|.+ .+++.|||-|=
T Consensus 99 HAalg~Y~~l~~-~~p~ll~~We--~~G---------Q~KIvvk~~~e~~l~~l~~~A~-~~gl~-t~~i~DAGrTQ 161 (190)
T KOG3282|consen 99 HAALGVYKHLMQ-RDPELLRRWE--NCG---------QAKIVVKAESEEELMELQKDAK-KLGLY-THLIQDAGRTQ 161 (190)
T ss_pred HHHHHHHHHHHH-hCHHHHHHHH--HcC---------CceEEEEcCCHHHHHHHHHHHH-HcCCc-EEEEEcCCccc
Confidence 445555555444 6888887763 212 7888888899899999988877 47987 88999999753
No 62
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=33.50 E-value=54 Score=28.91 Aligned_cols=33 Identities=15% Similarity=0.184 Sum_probs=28.6
Q ss_pred hhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccC
Q 019218 130 AAGFACLVFSLAKLMNLKENQSQLSAIARQGSG 162 (344)
Q Consensus 130 aA~~vA~i~Al~~l~~~~ls~~el~~lA~~~~G 162 (344)
--++++++.++++++|++++.++|.+-|.+++.
T Consensus 127 P~AA~alL~~L~kllgl~vd~~~L~e~Ae~ie~ 159 (188)
T TIGR00162 127 PKAAKAVLEVLCKMLSLEVSVEALEERAKEMEK 159 (188)
T ss_pred hHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 567888999999999999999999998876653
No 63
>PF06153 DUF970: Protein of unknown function (DUF970); InterPro: IPR010375 This is a family of uncharacterised bacterial proteins.; PDB: 3M05_A.
Probab=28.31 E-value=1.3e+02 Score=24.17 Aligned_cols=45 Identities=13% Similarity=0.039 Sum_probs=23.6
Q ss_pred HHHHHHHhhcCCceEEEEecCCC------CcEEEeecCC-chHHHHHHHHHhhh
Q 019218 291 SYVERWNRSVGSPQVCSFFAALS------GRCYEFCDLK-HIFVLSILSASARE 337 (344)
Q Consensus 291 ~~v~~~~~~~g~~~~~~~sgAGp------t~~~~~~~~~-~~~~~~~l~~~~~~ 337 (344)
+...++.+ .|.. +.-++-.|. |-+++-++++ .+++.+++++.+++
T Consensus 15 ~l~~~L~~-~g~~-~TkLsstGGFLr~GNtTlliGvede~v~~vl~iIk~~c~~ 66 (109)
T PF06153_consen 15 DLSDALNE-NGFR-VTKLSSTGGFLREGNTTLLIGVEDEKVDEVLEIIKENCKK 66 (109)
T ss_dssp HHHHHHHH-TT---EEEEEEEETTTTEEEEEEEEEEEGGGHHHHHHHHHHHH--
T ss_pred HHHHHHHH-CCce-EEEEecccceeccCCEEEEEEecHHHHHHHHHHHHHhhcC
Confidence 33334442 5654 555544444 4443434444 48899999999875
No 64
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. In eukaryotes, transcription initiation of all protein encoding genes involves the polymerase II system. This sytem is modulated by both general and specific transcription factors. The general factors (which include TFIIA, TFIIB, TFIID, TFIIE, TFIIF, TFIIG and TFIIH) operate through common promoter elements, such as the TATA box. Transcription factor IIB (TFIIB) is of central importance in transcription of class II genes. It associates with TFIID-TFIIA bound to DNA (the DA complex) to form a ternary TFIID-IIA-IBB (DAB) complex, which is recognised by RNA polymerase II [, ]. TFIIB comprises ~315-340 residues and contains an imperfect C-terminal repeat of a 75-residue domain that may contribute to the symmetry of the folded protein. The basal archaeal transcription machinery resembles that of the eukaryotic polymerase II system and includes a homologue of TFIIB []. This entry represents a cyclin-like domain which is found repeated in the C-terminal region of a variety of eukaryotic TFIIB's and their archaeal counterparts. These domains individually form the typical cyclin fold, and in the transcription complex they straddle the C-terminal region of the TATA-binding protein - an interaction essential for the formation of the transcription initiation complex [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2PHG_A 1C9B_Q 1TFB_A 1VOL_A 3K7A_M 1AIS_B 1D3U_B.
Probab=27.94 E-value=94 Score=22.25 Aligned_cols=31 Identities=13% Similarity=0.168 Sum_probs=26.3
Q ss_pred chhhhHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 019218 128 SSAAGFACLVFSLAKLMNLKENQSQLSAIAR 158 (344)
Q Consensus 128 SSaA~~vA~i~Al~~l~~~~ls~~el~~lA~ 158 (344)
|-.+.++|.++.+.+..+.+.+..|+++.+.
T Consensus 35 ~~~~iaAA~iY~acr~~~~~~t~~eIa~~~~ 65 (71)
T PF00382_consen 35 SPESIAAACIYLACRLNGVPRTLKEIAEAAG 65 (71)
T ss_dssp -HHHHHHHHHHHHHHHTTSSSSHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHHHcCCCcCHHHHHHHhC
Confidence 4577888899999999999999999988763
No 65
>TIGR00161 conserved hypothetical protein TIGR00161. This ortholog set includes MJ0106 from Methanococcus jannaschii and AF1251 from Archaeoglobus fulgidus, but not MJ1210 or AF0525.
Probab=27.92 E-value=72 Score=29.15 Aligned_cols=30 Identities=27% Similarity=0.182 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHhCCCCCHHHHHHHHHhcc
Q 019218 132 GFACLVFSLAKLMNLKENQSQLSAIARQGS 161 (344)
Q Consensus 132 ~~vA~i~Al~~l~~~~ls~~el~~lA~~~~ 161 (344)
++++++.++++++|++++.++|.+-|.+++
T Consensus 185 AA~~ll~~l~~l~~~~id~~~L~e~Ae~ie 214 (238)
T TIGR00161 185 AAASLVEVLNKMLNTNVDPEPLLKEAEAIE 214 (238)
T ss_pred HHHHHHHHHHHHhCCCcCHHHHHHHHHHHH
Confidence 588899999999999999999999887664
No 66
>COG3870 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.00 E-value=85 Score=24.81 Aligned_cols=28 Identities=7% Similarity=-0.069 Sum_probs=18.7
Q ss_pred cCCCCcEEEeecCCc-hHHHHHHHHHhhh
Q 019218 310 AALSGRCYEFCDLKH-IFVLSILSASARE 337 (344)
Q Consensus 310 gAGpt~~~~~~~~~~-~~~~~~l~~~~~~ 337 (344)
-||-|-+++=.++++ +.+.+++++.++-
T Consensus 38 kaGNTTfliGved~~vd~~~s~Ike~C~~ 66 (109)
T COG3870 38 KAGNTTFLIGVEDDRVDALRSLIKENCKS 66 (109)
T ss_pred ecCCeEEEEecccchhHHHHHHHHHHhhh
Confidence 477777733334433 7899999988764
No 67
>cd02430 PTH2 Peptidyl-tRNA hydrolase, type 2 (PTH2). Peptidyl-tRNA hydrolase (PTH) activity releases tRNA from the premature translation termination product peptidyl-tRNA, therefore allowing the tRNA and peptide to be reused in protein synthesis. PTH2 is present in archaea and eukaryotes.
Probab=25.34 E-value=3.6e+02 Score=21.69 Aligned_cols=35 Identities=14% Similarity=0.189 Sum_probs=26.8
Q ss_pred CCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCC
Q 019218 276 SPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAAL 312 (344)
Q Consensus 276 ~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAG 312 (344)
++.+..-.|+..++.++..++. +.|.. .+..-|||
T Consensus 49 ~~KiVl~~~~~~el~~l~~~a~-~~~l~-~~~v~DAG 83 (115)
T cd02430 49 QKKIVLKVNSEEELLELKKKAK-SLGLP-TSLIQDAG 83 (115)
T ss_pred CcEEEEecCCHHHHHHHHHHHH-HcCCC-eEEEEeCC
Confidence 4556667788899999888776 46875 77777999
No 68
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=24.99 E-value=88 Score=28.87 Aligned_cols=29 Identities=24% Similarity=0.253 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 019218 132 GFACLVFSLAKLMNLKENQSQLSAIARQG 160 (344)
Q Consensus 132 ~~vA~i~Al~~l~~~~ls~~el~~lA~~~ 160 (344)
+++.++.++|+++|++.|.++|.+-|.++
T Consensus 188 AAa~vve~lnk~~~l~V~td~L~keAe~i 216 (244)
T COG1938 188 AAARVVEALNKMLGLNVDTDKLEKEAEEI 216 (244)
T ss_pred HHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 45667889999999999998888877544
No 69
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=23.23 E-value=1.3e+02 Score=25.91 Aligned_cols=39 Identities=8% Similarity=0.018 Sum_probs=33.2
Q ss_pred ccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcc
Q 019218 124 AGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSA 164 (344)
Q Consensus 124 ~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~~~~Gs~ 164 (344)
.+.||+.--+.+...|+.+.- +++.+|+++-+..+.|+.
T Consensus 124 ~aIGSGgnyAl~AarAl~~~~--~lsA~eIa~~sl~iA~ei 162 (178)
T COG5405 124 IAIGSGGNYALSAARALMENT--ELSAREIAEKSLKIAGDI 162 (178)
T ss_pred EEEcCCchHHHHHHHHHHhcc--CCCHHHHHHHHHhhhheE
Confidence 678999999888888887754 799999999999888775
Done!