Query 019218
Match_columns 344
No_of_seqs 217 out of 1477
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 12:42:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019218.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019218hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f0n_A Mevalonate pyrophosphat 100.0 4.2E-65 1.4E-69 493.3 30.9 323 8-337 22-346 (414)
2 3lto_A Mevalonate diphosphate 100.0 6.6E-62 2.2E-66 461.5 32.7 296 8-336 1-309 (323)
3 3qt5_A Mevalonate diphosphate 100.0 2E-58 6.7E-63 441.6 29.9 309 5-337 5-315 (332)
4 2hke_A Diphosphomevalonate dec 100.0 1.8E-56 6.1E-61 435.5 33.4 310 9-336 5-319 (380)
5 1fi4_A Mevalonate 5-diphosphat 100.0 1.1E-53 3.7E-58 420.3 33.2 322 9-336 25-348 (416)
6 2gs8_A Mevalonate pyrophosphat 100.0 1.6E-48 5.6E-53 370.4 28.0 292 9-333 8-302 (317)
7 3hul_A HSK, HK, homoserine kin 100.0 9.4E-35 3.2E-39 273.7 24.6 264 8-334 1-270 (298)
8 3pyf_A 4-diphosphocytidyl-2-C- 100.0 2.3E-32 7.8E-37 258.4 20.5 270 8-334 6-281 (306)
9 1h72_C HK, homoserine kinase; 100.0 4.1E-31 1.4E-35 247.7 24.8 268 8-335 1-281 (296)
10 2v8p_A 4-diphosphocytidyl-2-C- 100.0 6E-30 2E-34 237.6 18.4 243 9-322 6-251 (271)
11 2hfs_A Mevalonate kinase, puta 100.0 4.5E-27 1.5E-31 223.8 29.4 287 2-337 8-315 (332)
12 2oi2_A Mevalonate kinase; enzy 100.0 6.7E-27 2.3E-31 218.3 27.8 264 9-335 5-283 (292)
13 4hac_A Mevalonate kinase; GHMP 100.0 2.4E-26 8.2E-31 218.4 28.9 266 9-334 21-304 (321)
14 1uek_A 4-(cytidine 5'-diphosph 99.9 1.5E-27 5.2E-32 221.7 14.3 249 12-332 5-255 (275)
15 2x7i_A Mevalonate kinase; tran 99.9 2.3E-25 7.7E-30 209.9 28.3 268 9-335 6-297 (308)
16 2cz9_A Probable galactokinase; 99.9 9.4E-25 3.2E-29 209.0 30.6 274 10-337 2-331 (350)
17 2pg9_A Phosphomevalonate kinas 99.9 3.7E-25 1.3E-29 211.6 26.9 282 8-333 2-320 (337)
18 1pie_A Galactokinase; galactos 99.9 1.1E-24 3.6E-29 214.2 30.6 278 10-337 49-396 (419)
19 2ww4_A 4-diphosphocytidyl-2C-m 99.9 1.2E-26 4.1E-31 216.8 15.5 237 10-321 5-249 (283)
20 1kkh_A Mevalonate kinase; mixe 99.9 4.6E-24 1.6E-28 201.7 25.6 264 10-332 6-304 (317)
21 1wuu_A Galactokinase; galactos 99.9 2.6E-23 9E-28 203.0 25.5 274 9-335 36-379 (399)
22 3gon_A Phosphomevalonate kinas 99.9 9E-23 3.1E-27 193.5 28.2 285 9-339 1-320 (335)
23 3k17_A LIN0012 protein; protei 99.9 1.8E-22 6.1E-27 195.0 28.7 290 9-340 6-344 (365)
24 3k85_A D-glycero-D-manno-hepto 99.9 1.7E-23 5.8E-28 201.6 18.6 283 8-333 2-321 (357)
25 2a2c_A N-acetylgalactosamine k 99.9 7.6E-22 2.6E-26 197.0 29.0 281 10-337 56-450 (478)
26 1kvk_A MK, mevalonate kinase; 99.9 3.4E-21 1.2E-25 187.7 29.0 277 9-338 5-363 (395)
27 3v2u_C Protein GAL3; rossmann 99.6 1.8E-12 6.2E-17 129.8 27.9 149 10-177 40-226 (520)
28 4hhu_A OR280; engineered prote 85.0 2.9 0.0001 32.8 6.9 51 287-337 56-107 (170)
29 2zv3_A PTH, peptidyl-tRNA hydr 36.6 1.4E+02 0.0048 22.8 8.2 36 276-313 49-84 (115)
30 1wn2_A Peptidyl-tRNA hydrolase 24.4 2.4E+02 0.0083 21.7 7.5 37 276-314 55-91 (121)
31 1q7s_A BIT1, protein CGI-147; 23.7 2.5E+02 0.0084 21.5 7.4 37 276-314 51-87 (117)
32 1xty_A PTH, peptidyl-tRNA hydr 21.4 2.8E+02 0.0095 21.2 7.2 36 276-313 54-89 (120)
33 1rlk_A Hypothetical protein TA 20.2 2.9E+02 0.01 21.0 7.4 37 276-314 51-87 (117)
No 1
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A
Probab=100.00 E-value=4.2e-65 Score=493.31 Aligned_cols=323 Identities=53% Similarity=0.815 Sum_probs=275.3
Q ss_pred eEEEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecCcccCCCcchHHHHHHHHH
Q 019218 8 LMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIR 87 (344)
Q Consensus 8 ~~~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g~~~~~~~~~~~~~~~~~~ 87 (344)
.+++++||+||||||||||||+.+++|.+||||++|++++|||+|+|+++++.+++++++||++.+....++.+|++.+|
T Consensus 22 ~~~t~~A~~NIAlIKYWGKrd~~l~lP~n~SiS~TL~~~~l~T~TtV~~s~~~~~D~i~LNG~~~~~~~~ri~~~l~~iR 101 (414)
T 3f0n_A 22 LMVTCTAPVNIAVIKYWGKRDEALILPINSSLSVTLHQDQLKTTTTVAISKDFTEDRIWLNGREEDVGQPRLQACLREIR 101 (414)
T ss_dssp EEEEEEECCEEEEECCCCEEETTTTEESSCEEEEEBCTTTSCEEEEEEECTTCCSCEEEETTEEECTTCHHHHHHHHHHH
T ss_pred ceEEEEecccchhhhhcccccccccCCCCCceEEEecCCCceEEEEEEEecCCCceEEEECCEecCcccHHHHHHHHHHH
Confidence 45899999999999999999999999999999999998889999999998765568999999976655688999999999
Q ss_pred HHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCccccc
Q 019218 88 SRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRS 167 (344)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~~~~Gs~a~s 167 (344)
+.++......-|. ..+++...+++|+++|+||+++|||||||++||++.|+|+++++ .++|+++|++++||+++|
T Consensus 102 ~~~~~~~~~~~~~--~~~~~~~~~~~I~~~~~iP~aaGLgSSaA~~aA~~~a~n~l~~l---~~el~~lA~~~sGs~~~s 176 (414)
T 3f0n_A 102 RLARKRRSTEDGD--TLPLSLSYKVHVASVNNFPTAAGLASSAAGYACLAYTLAQVYGV---EGDLSEVARRGSGSACRS 176 (414)
T ss_dssp HHHHC-------C--CHHHHHHSCEEEEEEECCCGGGCCCHHHHHHHHHHHHHHHHHTC---CSCCHHHHHHHCGGGGGG
T ss_pred HHhcccccccccc--cccccccCcEEEEEEeCCCCCcCcchhHHHHHHHHHHHHHHhCC---hHHHHHHHHHhCCCcchH
Confidence 9877521000000 01112236899999999999999999999999999999999997 368999999999999999
Q ss_pred cccCEEEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCchhhhhhhhhhchhHHHHHhhhhHHHHHHHHH
Q 019218 168 LFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEE 247 (344)
Q Consensus 168 ~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 247 (344)
+|||+|+|..+...++.+++..++++..+||++.++++++|...++++||++|++++++++++++++.+.+..++..|+.
T Consensus 177 ~~GG~v~w~~~~~~d~~ds~a~~i~~~~~wp~L~ivvlv~~~~~K~vsST~~mr~~l~ts~~~~~~v~~~~~~~~~~l~~ 256 (414)
T 3f0n_A 177 LYGGFVEWQMGEQADGKDSIARQIAPEWHWPQLRILILVVSADKKQTGSTVGMQTSVETSTLLKFRAESVVPERMKEMTR 256 (414)
T ss_dssp GSSSEEEECCCSCTTCTTCCEEEEECTTSCTTEEEEEEEESCCC-CCCHHHHHHHHHHHCHHHHHHHHHTHHHHHHHHHH
T ss_pred hhCCEEEEEeccCCCCCceEEEEcccccCCCCceEEEEEeCccccCCCchHHHHhhcccCccHHHHHHHHHHHHHHHHHH
Confidence 99999999765323344667788865567999999999999998999999999999999999999997523789999999
Q ss_pred HHHhCCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhc-CCceEEEEecCCCCcEEEeecCCc-h
Q 019218 248 AIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSV-GSPQVCSFFAALSGRCYEFCDLKH-I 325 (344)
Q Consensus 248 al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~-g~~~~~~~sgAGpt~~~~~~~~~~-~ 325 (344)
||.++||++|+++++.|+++||++++.++||+.||+|.+.++++.++++|+.. |++ ++||||||||++ +++++++ +
T Consensus 257 AL~~gD~~~~g~l~e~Ds~~lHa~~~~s~P~~~yl~p~s~~ii~~v~~~r~~~~g~~-~~~tsdAGPnv~-vl~~~~~~~ 334 (414)
T 3f0n_A 257 CIQEQDFQGFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNTHHGQTK-VAYTFDAGPNAV-IFTLEDTVA 334 (414)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCC-EEEECCSSSCEE-EEEEHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHhccCCCeeeeCccHHHHHHHHHHHHHhcCCce-EEEEECCCCCEE-EEEecccHH
Confidence 99999999999999999999999999999999999999999999999998543 776 999999999999 6665544 7
Q ss_pred HHHHHHHHHhhh
Q 019218 326 FVLSILSASARE 337 (344)
Q Consensus 326 ~~~~~l~~~~~~ 337 (344)
++.+.|+..|..
T Consensus 335 ~v~~~l~~~f~~ 346 (414)
T 3f0n_A 335 EFVAAVRHSFPP 346 (414)
T ss_dssp HHHHHHHHHSCC
T ss_pred HHHHHHHHhcCC
Confidence 788898877764
No 2
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila}
Probab=100.00 E-value=6.6e-62 Score=461.47 Aligned_cols=296 Identities=27% Similarity=0.361 Sum_probs=254.9
Q ss_pred eEEEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceE---EecCccc---CCC-cchHH
Q 019218 8 LMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRM---WLNGKEI---SLG-GGRYQ 80 (344)
Q Consensus 8 ~~~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i---~i~g~~~---~~~-~~~~~ 80 (344)
|--+|+||+||||||||||||+.+|+|.+||||++|+ ++||+|+|++ ++.+.|++ ++||++. ... ...+.
T Consensus 1 ~~~~a~a~~nialiKYwGk~d~~l~lP~n~SiS~tl~--~~~t~T~v~~-~~~~~d~~~~~~lng~~~~~~~~~~~~~~~ 77 (323)
T 3lto_A 1 MHWFAQAPANIALIKYMGKKDENSNLPDNSSLSYTLS--NLLSSVKLEK-LPTKKDIWEPLTIPGAPEFNLSVEAQKRFI 77 (323)
T ss_dssp CEEEEEEEEEEEEECCTTCBCTTTCCBSSCEEEEEEE--EEEEEEEEEE-CSSSSCEECCBCTTSSBCCCCCSHHHHHHH
T ss_pred CceEEEecchhHHhHhcCcccccccCCCCCceeEEcC--CCeeEEEEEe-cCCCCCeeeeEEECCEeccccccccchhHH
Confidence 3457999999999999999999999999999999999 5999999999 55456889 9999843 221 12334
Q ss_pred HHHHHHHHHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHH----HHHHHHhCCCC-CHHHHHH
Q 019218 81 NCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLV----FSLAKLMNLKE-NQSQLSA 155 (344)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i----~Al~~l~~~~l-s~~el~~ 155 (344)
..++.+.+.++. ..+++|+++|+||+++|||||||++||++ .|+|+++|+++ |++||++
T Consensus 78 ~~i~~~l~~~~~----------------~~gv~I~~~n~IP~aaGLgSSAA~~aA~~~~~~~aln~l~gl~l~s~~eL~~ 141 (323)
T 3lto_A 78 DHLVRLKEYFGY----------------VGGFLIQSSNNFPHSSGLASSASSFAALTKCASIALSELTQKPLPSIDEQAQ 141 (323)
T ss_dssp HHHHHHHHHHTC----------------CCCEEEEEEESSCTTTTCCCHHHHHHHHHHHHHHHHHHHHTCCCCCHHHHHH
T ss_pred HHHHHHHHHhCC----------------CCCEEEEEEeCCCCccCcchhHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 555555555554 46799999999999999999999999999 99999999999 9999999
Q ss_pred HHHhccCccccccccCEEEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCchhhhhhhhhhchhHHHHHh
Q 019218 156 IARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAK 235 (344)
Q Consensus 156 lA~~~~Gs~a~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 235 (344)
+|++++||+++|+|||+++|..+ +.+++. .+||++.++++++|..++.++|+++++. +++++++++++.
T Consensus 142 lA~~gsGsaa~si~GG~v~~~~g--------~~~~l~--~~~~~l~~~v~vi~~~~~~vsT~~~~~~-l~~~~~~~~~~~ 210 (323)
T 3lto_A 142 LSRLGSGSSCRSFYAPWALWTGD--------KVSAID--LPYKDLLHQVIVISSQEKEIPSRVAHKL-VKTSPFYETRSE 210 (323)
T ss_dssp HHHTTCGGGGGGGSCSEEEEETT--------EEEECC--CSCCSCEEEEEECCCCTTCCCHHHHHHH-GGGSTTTTTHHH
T ss_pred HHHHhCCCcchhhhCCEEEEecC--------cEEEcc--CCCCCCeEEEEEECCCCCCCCCHHHHhh-cccChhHHHHHH
Confidence 99999999999999999988654 255664 2478899888888887788999999887 688888888886
Q ss_pred hhhHHHHHHHHHHHHhCCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCCCc
Q 019218 236 EVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGR 315 (344)
Q Consensus 236 ~~~~~~~~~l~~al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGpt~ 315 (344)
+ ...++..|+.||.++|++.|+++++.|++.||++++.++||+.|++|.+.++++.++++|++.|++ ++||||||||+
T Consensus 211 ~-~~~~~~~l~~AL~~gD~~~l~~~~~~d~~~LHa~~~~~~P~~~~l~p~s~~i~~~v~~~r~~~G~~-~~~tsgAGPnv 288 (323)
T 3lto_A 211 R-AEANLKLLLNAFENKDWTSIYQICWHEFLDMHQLFKTCEKPFSYITDNTLHILSVIEKFWNEKGDG-PVVTMDAGPNV 288 (323)
T ss_dssp H-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHHHHHHHHHHHHHHSCC-CEEECCSSSCE
T ss_pred H-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhHHHhccCCCceecCchHHHHHHHHHHHHHhCCCe-EEEEECCCCCe
Confidence 4 488999999999999999999999999999999999999999999999999999999998557987 99999999999
Q ss_pred EEEeecCCc-hHHHHHHHHHhh
Q 019218 316 CYEFCDLKH-IFVLSILSASAR 336 (344)
Q Consensus 316 ~~~~~~~~~-~~~~~~l~~~~~ 336 (344)
+ +++++++ +++.+.|+..+.
T Consensus 289 ~-~l~~~~~~~~v~~~l~~~~~ 309 (323)
T 3lto_A 289 H-LLYRSDQTDLARQFKSDHLV 309 (323)
T ss_dssp E-EEECGGGHHHHHHHHHHHTT
T ss_pred E-EEEecccHHHHHHHHHHHhH
Confidence 9 6666555 778889887765
No 3
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A
Probab=100.00 E-value=2e-58 Score=441.57 Aligned_cols=309 Identities=35% Similarity=0.511 Sum_probs=262.8
Q ss_pred cceeEEEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecCcccCC-CcchHHHHH
Q 019218 5 KWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISL-GGGRYQNCL 83 (344)
Q Consensus 5 ~~~~~~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g~~~~~-~~~~~~~~~ 83 (344)
.++|+++++||+||||||||||||+++++|+|||||++|+ .+|++++|+.+++.+.+++.++|+..+. ..+++.+++
T Consensus 5 ~~~~~~~~~ap~nialiky~gk~~~~~~lP~~dslglal~--~~~~~~~v~~~~~~~~~~~~i~g~~~~~~~~n~v~~~~ 82 (332)
T 3qt5_A 5 SMVKSGKARAHTNIALIKYWGKADETYIIPMNNSLSVTLD--RFYTETKVTFDPDFTEDCLILNGNEVNAKEKEKIQNYM 82 (332)
T ss_dssp TTCEEEEEEEEEEEEEECCCCEEETTTTEESSCEEEEEEE--EEEEEEEEEEETTCSSCEEEETTEECCHHHHHHHHHHH
T ss_pred cceEEEEEEecCcEEEEeeeeeccCCccccCCCceEEEec--CCCCeeEEEEcCCCCccEEEECCccCCcchHHHHHHHH
Confidence 5789999999999999999999999999999999999998 4799999998754334789999986543 257888999
Q ss_pred HHHHHHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCc
Q 019218 84 KEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGS 163 (344)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~~~~Gs 163 (344)
+.+++.++. ..+++|+++++||.++|||||||+++|++.|++++++++++.+||+++|.+++|+
T Consensus 83 ~~~~~~~~~----------------~~~~~i~~~~~iP~~~GLgSSaa~~~a~~~a~~~l~~~~l~~~el~~la~~~~g~ 146 (332)
T 3qt5_A 83 NIVRDLAGN----------------RLHARIESENYVPTAAGLASSASAYAALAAACNEALSLNLSDTDLSRLARRGSGS 146 (332)
T ss_dssp HHHHHHHTC----------------CCEEEEEEEEESCGGGTCCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHCGG
T ss_pred HHHHHhcCC----------------CCCEEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcCC
Confidence 999988765 3579999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCEEEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCchhhhhhhhhhchhHHHHHhhhhHHHHH
Q 019218 164 ACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIV 243 (344)
Q Consensus 164 ~a~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (344)
+++|+|||+++|..+.+ +.+++..++++...||++++++++++.+.+++++|.++++.+++++.+++++.+ +..++.
T Consensus 147 ~~~~~~GG~~~~~~g~~--~~~~~~~~l~~~~~~~~l~~vv~vp~~~~~~~ss~~~~~~~~~~s~~~~~~v~~-~~~~~~ 223 (332)
T 3qt5_A 147 ASRSIFGGFAEWEKGHD--DLTSYAHGINSNGWEKDLSMIFVVINNQSKKVSSRSGMSLTRDTSRFYQYWLDH-VDEDLN 223 (332)
T ss_dssp GGGGGSCSEEEEECCSS--TTTCEEEEECCTTGGGGEEEEEECCCCCCCC--CHHHHHHHHHHCTTHHHHHHH-HHHHHH
T ss_pred chhhhcCCeEEEecCCC--CccceeeecccccCCCCcEEEEEEEcCCCCCCchHHHHHHhhhcChhHHHHHHH-HHHHHH
Confidence 99999999999865432 234456677532235788888888777767788999999877777778888876 356899
Q ss_pred HHHHHHHhCCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCCCcEEEeecCC
Q 019218 244 QMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRCYEFCDLK 323 (344)
Q Consensus 244 ~l~~al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGpt~~~~~~~~~ 323 (344)
.++.||.++|++.|+++|+.|+++||+++++++|++.|++|.+.++++.+++++ +.|++ ++++||||||++ ++++++
T Consensus 224 ~l~~Al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~yl~p~~~~i~~~~~~~~-~~Ga~-~a~~SGaGPtv~-~l~~~~ 300 (332)
T 3qt5_A 224 EAKEAVKNQDFQRLGEVIEANGLRMHATNLGAQPPFTYLVQESYDAMAIVEQCR-KANLP-CYFTMDAGPNVK-VLVEKK 300 (332)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHHHHHHHHHHH-HTTCC-EEEECCSSSCEE-EEEEHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhcccCCCceeeChHHHHHHHHHHHHH-hCCCc-EEEEeCCCCcEE-EEECHH
Confidence 999999999999999999889999999999999999999999999999999887 47997 889999999999 555544
Q ss_pred c-hHHHHHHHHHhhh
Q 019218 324 H-IFVLSILSASARE 337 (344)
Q Consensus 324 ~-~~~~~~l~~~~~~ 337 (344)
+ +++.+.|+..+..
T Consensus 301 ~a~~v~~~l~~~~~~ 315 (332)
T 3qt5_A 301 NKQAVMEQFLKVFDE 315 (332)
T ss_dssp HHHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHhCCC
Confidence 4 6688888776653
No 4
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei}
Probab=100.00 E-value=1.8e-56 Score=435.52 Aligned_cols=310 Identities=38% Similarity=0.620 Sum_probs=259.3
Q ss_pred EEEEEecceeEeeeecccccCCC--CCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecCcccCC-CcchHHHHHHH
Q 019218 9 MVTAQTPTNIAVIKYWGKRDETL--ILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISL-GGGRYQNCLKE 85 (344)
Q Consensus 9 ~~~~~a~~nial~ky~Gk~d~~~--~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g~~~~~-~~~~~~~~~~~ 85 (344)
+++|+||+||||+|||||||++| ++|+|||||++|++++||++++|+..++.++++++++|++.+. .++++.++++.
T Consensus 5 ~~~a~A~~Nial~ky~Gkrddg~~~~vP~~dslglaL~~~~l~~~~~v~~~~~~~~~~i~i~g~~~~~~~~~~v~~~~~~ 84 (380)
T 2hke_A 5 CVTVEAPINIAFIKYWGKREGGETLILPTNDSFSITLSASPFRSKTSVELRDDIETDTLRLNGTEVDVGKTPRVQSMLLH 84 (380)
T ss_dssp EEEEEECCEEEEECCCCBCTTCTTTTCBSSCEEEEEBCSSSCCEEEEEEEESSCSSCEEEETTEEECGGGCHHHHHHHHH
T ss_pred cEEEEcCccchhhhhcccccCcccccCCCCCceEEEecCCCCceEEEEEECCCCCccEEEECCcccCchhHHHHHHHHHH
Confidence 58999999999999999999655 9999999999999666999999997642224789999986544 46788889999
Q ss_pred HHHHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCccc
Q 019218 86 IRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSAC 165 (344)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~~~~Gs~a 165 (344)
+++.++.. .+..+++|+++|+||+++|||||||+++|++.|+|+++|++ +||+++|++++||++
T Consensus 85 ~~~~~~~~-------------~~~~~v~I~~~~~IP~aaGLGSSAA~aaA~l~Aln~l~gl~---~eL~~lA~~g~Gsva 148 (380)
T 2hke_A 85 LRSTCPEE-------------LKNKKVNIVSENNFPTAAGMASSASGYCAMSAALIRAFKST---TNVSMLARLGSGSAC 148 (380)
T ss_dssp HHTSSCHH-------------HHTCEEEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHTCS---SCHHHHHHHHCGGGG
T ss_pred HHHHhccc-------------CCCCCEEEEEeccCCCccCcchHHHHHHHHHHHHHHHcCCH---HHHHHHHhhcCccee
Confidence 98876530 01357999999999999999999999999999999999987 899999999999999
Q ss_pred cccccCEEEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCchhhhhhhhhhchhHHHHHhhhhHHHHHHH
Q 019218 166 RSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQM 245 (344)
Q Consensus 166 ~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 245 (344)
+|+|||+++|..+.+.++.+++..+++++.+||+++++++++|...+.+++|..+++++++++.+++++.++...++..+
T Consensus 149 ~s~~GG~v~~~~g~~~~~~~~~~~~l~~~~~~p~l~~~vlv~~~~~~~~sst~~~r~~~~~~~~~~~~~~~~~~~~~~~l 228 (380)
T 2hke_A 149 RSAFGGFVIWNKGEKPDGSDCVATQFVDETHWPEIQVMCAVLKGAQKDVSSTKGMQQSLKTSPLMKKRISETVPERMKIA 228 (380)
T ss_dssp GGGSSSEEEEECCSCTTSTTCEEEEEECTTSCTTEEEEEEECCCCSCCCCHHHHHHHHHHHCTTHHHHHHTHHHHHHHHH
T ss_pred eehhCCeEEEecCCCCCCCcceEEeccCcccCCcceEEEEEecCCCCCCCCHHHHHHHHhcChhHHHHHHHHHHHHHHHH
Confidence 99999999886553222234567777644458899988888776667788999999888888888887764348899999
Q ss_pred HHHHHhCCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcC-CceEEEEecCCCCcEEEeecCCc
Q 019218 246 EEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVG-SPQVCSFFAALSGRCYEFCDLKH 324 (344)
Q Consensus 246 ~~al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g-~~~~~~~sgAGpt~~~~~~~~~~ 324 (344)
+.||.++|++.|+++++.|++.||+++++.+|++.+++|.+.++++.++++++..| +. ++++||||||++ +++++++
T Consensus 229 ~~Al~~~D~~~lg~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~i~~~~~~~~~~~Ga~~-~a~~SGaGPtv~-~l~~~~~ 306 (380)
T 2hke_A 229 SRAIKARDFATFAEIAMLESDDLQEICATTEPKITYATEDSYAMIRLVKAYNAKKGRTA-LAYTFDAGANCF-LFVLKED 306 (380)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCC-EEEECCSSSCEE-EEEEGGG
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhhhccCCCeeEECHHHHHHHHHHHHHHHhcCCcc-eEEEECCCCcEE-EEECHHH
Confidence 99999999999999999999999999999999999999999999999999875338 64 899999999999 5555443
Q ss_pred -hHHHHHHHHHhh
Q 019218 325 -IFVLSILSASAR 336 (344)
Q Consensus 325 -~~~~~~l~~~~~ 336 (344)
+++.+.|+..+.
T Consensus 307 ~~~v~~~l~~~~~ 319 (380)
T 2hke_A 307 LPEAVAMLMEHFP 319 (380)
T ss_dssp HHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhcc
Confidence 668888887765
No 5
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2
Probab=100.00 E-value=1.1e-53 Score=420.26 Aligned_cols=322 Identities=47% Similarity=0.742 Sum_probs=263.1
Q ss_pred EEEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecCcccCCCcchHHHHHHHHHH
Q 019218 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIRS 88 (344)
Q Consensus 9 ~~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g~~~~~~~~~~~~~~~~~~~ 88 (344)
+++++||+||||||||||||+++++|.+||||++|+.+++|++++|+.+++.+.++++++|+..+..++++.++++.+++
T Consensus 25 ~~~~~Ap~nialik~~gkr~~~~~~P~~dslg~aL~~~~l~~~~~v~~~~~~~~~~i~i~G~~~~~~~~~v~~~~~~~~~ 104 (416)
T 1fi4_A 25 TASVTAPVNIATLKYWGKRDTKLNLPTNSSISVTLSQDDLRTLTSAATAPEFERDTLWLNGEPHSIDNERTQNCLRDLRQ 104 (416)
T ss_dssp EEEEEECCEEEEECCCCEEETTTTEESSCEEEEEBCTTTSCEEEEEEECTTCCSCBCTTTCCBSSSSSSSHHHHHHHHHH
T ss_pred EEEEEecceEEEEecccccCCceecccccceEEEEEcCCCcceEEEEEcCCCCccEEEECCccccccchHHHHHHHHHHH
Confidence 58999999999999999999999999999999999855599999999864312467888887544346789999999998
Q ss_pred HccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcccccc
Q 019218 89 RACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSL 168 (344)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~~~~Gs~a~s~ 168 (344)
.++..++.+.. .+.+...+++|+++|+||.++|||||||+++|++.|+|+++|++++.+||+++|++++||+++|+
T Consensus 105 ~~~~~~~~~~~----~~~~~~~gv~I~i~~~IP~~aGLGSSAA~aaA~l~Aln~l~gl~Ls~~eLa~lA~~g~Gs~~~sl 180 (416)
T 1fi4_A 105 LRKEMESKDAS----LPTLSQWKLHIVSENNFPTAAGLASSAAGFAALVSAIAKLYQLPQSTSEISRIARKGSGSACRSL 180 (416)
T ss_dssp HHHHHHTTCTT----SCCGGGSCEEEEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHGGGGGGG
T ss_pred Hhccccccccc----cccccCCcEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhccCCchheEe
Confidence 76531000000 00111357999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCEEEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCchhhhhhhhhhchhHHHHHhhhhHHHHHHHHHH
Q 019218 169 FGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEA 248 (344)
Q Consensus 169 ~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 248 (344)
|||+++|..+.+.++.+++..+++....||++++++++++...+.+++|.++++.+++++.+++++.++...++..++.|
T Consensus 181 ~GG~v~~~~G~~~~~~~~~~~~l~~~~~~p~l~~vvlv~~~~~~~~sst~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~A 260 (416)
T 1fi4_A 181 FGGYVAWEMGKAEDGHDSMAVQIADSSDWPQMKACVLVVSDIKKDVSSTQGMQLTVATSELFKERIEHVVPKRFEVMRKA 260 (416)
T ss_dssp SSSEEEEECCSCTTCTTCEEEEEECGGGSTTEEEEEEEECCCSCCCCHHHHHHHHHHHCSHHHHHHHTHHHHHHHHHHHH
T ss_pred eCCcEEEecCCcCCCCCceeEEecCccCCcccEEEEEEECCCCCCcCCHHHHHHHhhcCHhHHHHHHHHHHHHHHHHHHH
Confidence 99999986553222234556676543457889888888877667788999999877777777777765347899999999
Q ss_pred HHhCCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcC-CceEEEEecCCCCcEEEeecCCc-hH
Q 019218 249 IQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVG-SPQVCSFFAALSGRCYEFCDLKH-IF 326 (344)
Q Consensus 249 l~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g-~~~~~~~sgAGpt~~~~~~~~~~-~~ 326 (344)
|.++|++.|+++|+.|++.||+++++++|++.+++|.+.++++.+++++...| +. ++++||||||++ +++++++ ++
T Consensus 261 L~~gD~~~~g~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~i~~~~~~~r~~~Ga~~-~a~~SGaGPtv~-al~~~~~~~~ 338 (416)
T 1fi4_A 261 IVEKDFATFAKETMMDSNSFHATCLDSFPPIFYMNDTSKRIISWCHTINQFYGETI-VAYTFDAGPNAV-LYYLAENESK 338 (416)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCC-EEEEECSSSCEE-EEEEGGGHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHhhccCCceeeecHHHHHHHHHHHHHHHhcCCce-EEEEecCCCcEE-EEECHHHHHH
Confidence 99999999999999999999999999999999999999999999998874237 65 889999999999 5555443 66
Q ss_pred HHHHHHHHhh
Q 019218 327 VLSILSASAR 336 (344)
Q Consensus 327 ~~~~l~~~~~ 336 (344)
+.+.|+..+.
T Consensus 339 v~~~l~~~~~ 348 (416)
T 1fi4_A 339 LFAFIYKLFG 348 (416)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhcc
Confidence 8888887776
No 6
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas}
Probab=100.00 E-value=1.6e-48 Score=370.38 Aligned_cols=292 Identities=26% Similarity=0.404 Sum_probs=232.9
Q ss_pred EEEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEE-cCCCCcceEEecCcccCCC-cchHHHHHHHH
Q 019218 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAV-SPSFDQDRMWLNGKEISLG-GGRYQNCLKEI 86 (344)
Q Consensus 9 ~~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~-~~~~~~~~i~i~g~~~~~~-~~~~~~~~~~~ 86 (344)
+++++||+||+|+|||||||++|++|+|||+|++|+ ++|++++|+. +++.+.+++.++|++.+.. .+.+.++++.+
T Consensus 8 ~~~~~ap~~i~l~~~~g~~~~g~~lp~~dslg~al~--~l~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~n~v~~~~~~~ 85 (317)
T 2gs8_A 8 VITVTSYANIAIIKYWGKENQAKMIPSTSSISLTLE--NMFTTTSVSFLPDTATSDQFYINGILQNDEEHTKISAIIDQF 85 (317)
T ss_dssp EEEEEEEEEEEEECCCCEEETTTTEESSCEEEEEEE--EEEEEEEEEECCTTCCSCEEEETTEECCHHHHHHHHHHHTTT
T ss_pred cEEEEecCcEEEEeeeeeccCCcccCCCCceEEEee--cccceEEEEEEcCCCCeEEEEECCCccccchHHHHHHHHHHH
Confidence 378999999999999999999999999999999995 3999999997 5321246788888643321 23344444433
Q ss_pred HHHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcccc
Q 019218 87 RSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACR 166 (344)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~~~~Gs~a~ 166 (344)
++.. ..+++|+++++||.++|||||||+++|++.|+++++|++++.+||+++|.+++|++++
T Consensus 86 ~~~~------------------~~g~~I~i~~~IP~~~GLGSSaA~~vA~~~al~~l~g~~ls~~el~~la~~~~G~~~~ 147 (317)
T 2gs8_A 86 RQPG------------------QAFVKMETQNNMPTAAGLSSSSSGLSALVKACDQLFDTQLDQKALAQKAKFASGSSSR 147 (317)
T ss_dssp CCTT------------------CCCEEEEEECCSCGGGCCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGG
T ss_pred HHhc------------------CCCeEEEEeCCCCCCCchHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcchhHh
Confidence 3221 1468999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCEEEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCchhhhhhhhhhchhHHHHHhhhhHHHHHHHH
Q 019218 167 SLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQME 246 (344)
Q Consensus 167 s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 246 (344)
|++||++++... +.++...+++ ++++++++++|...+.+++++++++.+++.+.++++..+ ...++..++
T Consensus 148 ~~~GG~~~~~~~----~~~~~~~~~~-----~~~~~~v~i~~~~~~~~~tt~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 217 (317)
T 2gs8_A 148 SFFGPVAAWDKD----SGAIYKVETD-----LKMAMIMLVLNAAKKPISSREGMKLCRDTSTTFDQWVEQ-SAIDYQHML 217 (317)
T ss_dssp GGSCSEEEECTT----TCCEEECCCC-----CCEEEEEEECCCSSCCSCHHHHHHHHHHHCTTHHHHHHH-HHHHHHHHH
T ss_pred hhcCChheEeeC----CCceeEEEcc-----ccccEEEEEEECCCcCcccHHHHHHHhhcCHHHHHHHHH-HHHHHHHHH
Confidence 999999987531 1222233332 256766777676556777888888777776666665543 378899999
Q ss_pred HHHHhCCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCCCcEEEeecCCc-h
Q 019218 247 EAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRCYEFCDLKH-I 325 (344)
Q Consensus 247 ~al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGpt~~~~~~~~~~-~ 325 (344)
.||.++|++.|+++|+.|++.||++++.+.|++.+++|.+.++++.+++++. .|+. ++++||||||++ +++++++ +
T Consensus 218 ~al~~~d~~~lg~~~~~~~~~l~~~~~~~~p~~~~l~~~~~~i~~~~~~~~~-~G~~-~~~~SGaGptv~-~l~~~~~~~ 294 (317)
T 2gs8_A 218 TYLKTNNFEKVGQLTEANALAMHATTKTANPPFSYLTKESYQAMEAVKELRQ-EGFA-CYFTMDAGPNVK-VLCLEKDLA 294 (317)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTSSSCCCSCCHHHHHHHHHHHHHHH-TTCC-EEEECCSSSCEE-EEEEGGGHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhhccCCCceeEhHHHHHHHHHHHHHHh-cCCc-EEEEecCCCeEE-EEEcHHHHH
Confidence 9999999999999999999999999999999999999999999999988884 6875 899999999999 5555433 5
Q ss_pred HHHHHHHH
Q 019218 326 FVLSILSA 333 (344)
Q Consensus 326 ~~~~~l~~ 333 (344)
++.+.++.
T Consensus 295 ~v~~~l~~ 302 (317)
T 2gs8_A 295 QLAERLGK 302 (317)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 56666654
No 7
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}
Probab=100.00 E-value=9.4e-35 Score=273.74 Aligned_cols=264 Identities=16% Similarity=0.146 Sum_probs=181.9
Q ss_pred eEEEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecC-cccCC-CcchHHHHHHH
Q 019218 8 LMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNG-KEISL-GGGRYQNCLKE 85 (344)
Q Consensus 8 ~~~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g-~~~~~-~~~~~~~~~~~ 85 (344)
||+++++|++.|++ +|||||+|++|+ +|++++++... ++.++..++ ..++. .++.+.++++.
T Consensus 1 ~m~~v~vPat~anl-----------G~Gfd~lg~al~---l~d~v~~~~~~--~~~~i~~~~~~~~p~~~~nlv~~a~~~ 64 (298)
T 3hul_A 1 MSLRIRVPATTANL-----------GPGFDSCGLALT---LYLTLDIGAEA--DSWYIEHNIGGGIPHDETNVIIETALN 64 (298)
T ss_dssp -CEEEEEEEEEESC-----------TTCTTTEEEEEE---EEEEEEEEEEC--SSCEEECCCCTTCCSSTTSHHHHHHHH
T ss_pred CeEEEEEeeceecc-----------CCCcchhhhhcc---cceEEEEEEcC--CceEEEecCcccCCCCCCcHHHHHHHH
Confidence 57999999999998 899999999999 99999997432 234444333 22222 24556666555
Q ss_pred HHHHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccC---
Q 019218 86 IRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSG--- 162 (344)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~~~~G--- 162 (344)
+++ . ..+++|+++++||.++|||||||+++|++.|++++++.+++.+||+++|.+++|
T Consensus 65 ~~~---~----------------~~g~~i~i~~~iP~~~GLGsssa~~~a~~~al~~~~~~~l~~~el~~la~~~eg~~d 125 (298)
T 3hul_A 65 LAP---N----------------LTPHHLVMTCDIPPARGLGSSSAAVVAGIELANTLAELNLSKEEKVRIAAEIEGHPD 125 (298)
T ss_dssp HCT---T----------------CCCEEEEEEECSCTTSSSSHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHSCST
T ss_pred Hhc---c----------------CCceEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCcc
Confidence 543 2 356899999999999999999999999999999999999999999999999998
Q ss_pred ccccccccCEEEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCchhhhhhhhhhchhHHHHHhhhhHHHH
Q 019218 163 SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRI 242 (344)
Q Consensus 163 s~a~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (344)
++++|++||+++. .+.++ .....+++ +|++++++++++. .++|.++++ .++....+.+.+.+ ..++
T Consensus 126 dv~~~~~GG~~~~-~g~ge---~~~~~~~~----~p~~~~vlv~p~~---~~sT~~a~~-~l~~~~~~~~~~~~--~~~~ 191 (298)
T 3hul_A 126 NVAPAVLGNWVVG-AKLDG---EDFYVRHL----FPDCALIAFIPKA---ELLTSESRG-VLPDTLPFKEAVQA--SSIA 191 (298)
T ss_dssp THHHHHHCSEEEE-EEETT---EEEEEEEC----CC-CEEEEEECCC---CCC---------CCEEEHHHHHHH--HHHH
T ss_pred cCcccccCCEEEE-EeCCC---cEEEEEcC----CCCeEEEEEECCC---CCCcHHHHH-HHhhhccHHHHHHH--HHHH
Confidence 5788999999873 33211 12233553 4667766665433 355555443 44443223444544 4568
Q ss_pred HHHHHHHHhCCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCCCcEEEeecC
Q 019218 243 VQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRCYEFCDL 322 (344)
Q Consensus 243 ~~l~~al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGpt~~~~~~~~ 322 (344)
..++.+|.++|++.++++|.+| .+|+.++ ..+.|.+.++++.+++ .|++ ++.+||||||++ .++++
T Consensus 192 ~~~~~al~~~d~~~l~~~l~nd--~~~e~~~------~~~~p~l~~l~~~~~~----~Ga~-ga~~SGsGptv~-al~~~ 257 (298)
T 3hul_A 192 NVMIAAILRNDMTLAGEMMERD--LWHEKYR------SQLVPHLAQIRDVAKN----QGAY-AACLSGAGPTVL-VFAPR 257 (298)
T ss_dssp HHHHHHHTTTCHHHHHHHHTCC--CC-----------CTTGGGHHHHHHHHHT----TTCC-EEEECTTSSCEE-EEECG
T ss_pred HHHHHHHHcCCHHHHHHHHhhh--HHHHHHH------HhhCchHHHHHHHHHH----CCCE-EEEEeccchheE-EEECH
Confidence 8999999999999999987543 6785444 4478888888887654 6887 777889999988 55553
Q ss_pred Cc-hHHHHHHHHH
Q 019218 323 KH-IFVLSILSAS 334 (344)
Q Consensus 323 ~~-~~~~~~l~~~ 334 (344)
++ +++.+.|++.
T Consensus 258 ~~a~~v~~~l~~~ 270 (298)
T 3hul_A 258 NLANKLQTSLQTL 270 (298)
T ss_dssp GGHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhc
Confidence 33 5566666543
No 8
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Probab=100.00 E-value=2.3e-32 Score=258.37 Aligned_cols=270 Identities=14% Similarity=0.116 Sum_probs=197.1
Q ss_pred eEEEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecCc---ccCC-CcchHHHHH
Q 019218 8 LMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGK---EISL-GGGRYQNCL 83 (344)
Q Consensus 8 ~~~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g~---~~~~-~~~~~~~~~ 83 (344)
+.++|.|+.|+.| ...|||+|+|| ..+|+.++++ ||++++|+..+ ..++.+.|. .++. .++.+.+++
T Consensus 6 ~~~~apAKiNL~L-~v~~~r~DGyh--~l~s~~~al~---l~D~l~~~~~~---~~~i~~~g~~~~~~p~~~~Nlv~~A~ 76 (306)
T 3pyf_A 6 VTVRVPGKVNLYL-AVGDRREDGYH--ELTTVFHAVS---LVDEVTVRNAD---VLSLELVGEGADQLPTDERNLAWQAA 76 (306)
T ss_dssp EEEEEEEEEEEEE-EECCCCTTSCC--CEEEEEEEEE---EEEEEEEEECS---SCEEEEESTTGGGSCCSTTSHHHHHH
T ss_pred EEEEecceEEeec-ccCCcCCCCCc--chheeEEEcc---cCCEEEEEECC---CCEEEEeCCCccCCCCCCccHHHHHH
Confidence 4577888888888 45799999999 5899999999 99999998764 456777664 2332 368899999
Q ss_pred HHHHHHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCc
Q 019218 84 KEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGS 163 (344)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~~~~Gs 163 (344)
+.+++.++. ..+++|+++++||.++|||||||+++|++.|++++++.+++.++|.++|.+++.+
T Consensus 77 ~~l~~~~g~----------------~~~~~i~i~~~iP~~~GLGsssa~a~a~l~al~~~~~~~l~~~~l~~la~~~~~D 140 (306)
T 3pyf_A 77 ELMAEHVGR----------------APDVSIMIDKSIPVAGGMAGGSADAAAVLVAMNSLWELNVPRRDLRMLAARLGSD 140 (306)
T ss_dssp HHHHHHTTC----------------CCCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHCTT
T ss_pred HHHHHHhCC----------------CCCeEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCC
Confidence 999988875 3579999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCEEEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCchhhhhhhhhhchhHHHHHhhhhHHHHH
Q 019218 164 ACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIV 243 (344)
Q Consensus 164 ~a~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (344)
+++|++||+++. .+.++ ...+++. .++++++++. |.. .++|.++++ .++......+ +.+ ..++.
T Consensus 141 v~~~~~Gg~~~~-~g~ge-----~~~~l~~---~~~~~~vl~~-P~~--~vsT~~a~~-~l~~~~~~~~-~~~--~~~~~ 204 (306)
T 3pyf_A 141 VPFALHGGTALG-TGRGE-----ELATVLS---RNTFHWVLAF-ADS--GLLTSAVYN-ELDRLREVGD-PPR--LGEPG 204 (306)
T ss_dssp HHHHHHBSEEEE-CSSSS-----CCEEECC---SSCEEEEEEE-CSS--CCCHHHHHH-HHHHHHHHSC-CCC--CCCHH
T ss_pred CceeecCceEEE-EeeCC-----eEEEccC---CCCcEEEEEE-CCC--CCcHHHHHH-hhhhhccccc-ccc--ccCHH
Confidence 999999999764 33322 1345542 1456655554 432 455555444 3332110000 111 22578
Q ss_pred HHHHHHHhCCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCCCcEEEeecCC
Q 019218 244 QMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRCYEFCDLK 323 (344)
Q Consensus 244 ~l~~al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGpt~~~~~~~~~ 323 (344)
.++.+|.++|++.+++.+. | .|+. ++..+.|.+.++++.+.+ .|++ ++..||+|||++ .+++++
T Consensus 205 ~~~~al~~~d~~~l~~~l~-n--~le~-------~~~~~~P~l~~i~~~~~~----~Ga~-ga~mSGsGptvf-al~~~~ 268 (306)
T 3pyf_A 205 PVLAALAAGDPDQLAPLLG-N--EMQA-------AAVSLDPALARALRAGVE----AGAL-AGIVSGSGPTCA-FLCTSA 268 (306)
T ss_dssp HHHHHHHHTCHHHHGGGCE-E--TTHH-------HHHHHCTHHHHHHHHHHH----TTCS-EEEECTTSSEEE-EEESSH
T ss_pred HHHHHHHhCCHHHHHHHhc-c--chHH-------HHHHhChHHHHHHHHHHh----cCCC-EEEEcCcchhhe-EEeCCH
Confidence 8999999999999998763 3 3432 333467888888888765 6887 777789999998 555432
Q ss_pred c--hHHHHHHHHH
Q 019218 324 H--IFVLSILSAS 334 (344)
Q Consensus 324 ~--~~~~~~l~~~ 334 (344)
. +++.+.|++.
T Consensus 269 ~~a~~~~~~l~~~ 281 (306)
T 3pyf_A 269 SSAIDVGAQLSGA 281 (306)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 2 4455555543
No 9
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*
Probab=99.98 E-value=4.1e-31 Score=247.72 Aligned_cols=268 Identities=16% Similarity=0.104 Sum_probs=191.5
Q ss_pred eEEEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCc-eeEEEEEEcCCCCcceEEecCcccCC--CcchHHHHHH
Q 019218 8 LMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHL-CTTTTVAVSPSFDQDRMWLNGKEISL--GGGRYQNCLK 84 (344)
Q Consensus 8 ~~~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l-~~~~~v~~~~~~~~~~i~i~g~~~~~--~~~~~~~~~~ 84 (344)
++++++||..|+++ +|+||++|+++| . +++++++..++ +..++..++...+. ..+.+.++++
T Consensus 1 ~~i~v~aPaki~nl-----------G~g~~vl~~a~d---~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~n~v~~a~~ 65 (296)
T 1h72_C 1 MKVRVKAPCTSANL-----------GVGFDVFGLCLK---EPYDVIEVEAIDD-KEIIIEVDDKNIPTDPDKNVAGIVAK 65 (296)
T ss_dssp CEEEEEEEEEEECT-----------GGGTTTEEEEEE---EEEEEEEEEEESS-SSEEEEESCTTSCCCTTTSHHHHHHH
T ss_pred CeEEEEEEeehhcc-----------ccchhhhHHhcc---cccEEEEEEecCC-CeEEEEEcCCcCCCCCccCcHHHHHH
Confidence 45788999999996 589999999999 5 55566665432 12344446643322 2577888999
Q ss_pred HHHHHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccC--
Q 019218 85 EIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSG-- 162 (344)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~~~~G-- 162 (344)
.+++.++. ..+++|+++++||.++|||||||+++|++.|++++++++++.++|+++|.++++
T Consensus 66 ~~~~~~g~----------------~~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~l~~~~l~~~~l~~la~~~e~~~ 129 (296)
T 1h72_C 66 KMIDDFNI----------------GKGVKITIKKGVKAGSGLGSSAASSAGTAYAINELFKLNLDKLKLVDYASYGELAS 129 (296)
T ss_dssp HHHHHTTC----------------CCEEEEEEECSSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCC----------------CCCeEEEEEcCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcCcc
Confidence 98887765 357999999999999999999999999999999999999999999999988876
Q ss_pred -------ccccccccCEEEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCchhhhhhhhhhchhHHHHHh
Q 019218 163 -------SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAK 235 (344)
Q Consensus 163 -------s~a~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 235 (344)
++++|++||++++..+. +....+++.+ ++++++++. |. ..++|.+.+. .++....+.+.+.
T Consensus 130 ~g~~~~ddv~~~~~gg~~~~~~~~-----~~~~~~~~~~---~~~~~vl~~-p~--~~~~T~~~~~-~l~~~~~~~~~~~ 197 (296)
T 1h72_C 130 SGAKHADNVAPAIFGGFTMVTNYE-----PLEVLHIPID---FKLDILIAI-PN--ISINTKEARE-ILPKAVGLKDLVN 197 (296)
T ss_dssp HSSCCCTTHHHHHHCSEEEEEETT-----TTEEEEECCC---SCCCEEEEC-CS--SCCCHHHHHH-TSCSCCCHHHHHH
T ss_pred cCCCCccchHHHHhCCEEEEEeCC-----ceEEEEEcCC---CCeEEEEEe-CC--CCccHHHHHH-hccCcCcHHHHHH
Confidence 66779999999874321 1224555421 356655543 33 2354555443 4443322334555
Q ss_pred hhhHHHHHHHHHHHHhCCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCCCc
Q 019218 236 EVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGR 315 (344)
Q Consensus 236 ~~~~~~~~~l~~al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGpt~ 315 (344)
+ ..++..++.+|.++|++.|+++|+.| .+|+.++ ..+.|.+.++++.+++ . ++ ++.+|||||++
T Consensus 198 ~--~~~~~~~~~al~~~d~~~~~~~~~~n--~~h~~~~------~~~~p~l~~~~~~~~~----~-a~-ga~~sGsG~~v 261 (296)
T 1h72_C 198 N--VGKACGMVYALYNKDKSLFGRYMMSD--KVIEPVR------GKLIPNYFKIKEEVKD----K-VY-GITISGSGPSI 261 (296)
T ss_dssp H--HHHHHHHHHHHHTTCHHHHHHHHTTC--CSSHHHH------HTTSTTHHHHHHHHTT----T-EE-EEEECTTSSCE
T ss_pred H--HHHHHHHHHHHHcCCHHHHHHHHhcC--cchhhhh------hccCccHHHHHHHHHh----h-cc-eEEEecCChhe
Confidence 4 45677899999999999999987454 6687665 3478888888887654 3 45 56677999998
Q ss_pred EEEeecCCc-hHHHHHHHHHh
Q 019218 316 CYEFCDLKH-IFVLSILSASA 335 (344)
Q Consensus 316 ~~~~~~~~~-~~~~~~l~~~~ 335 (344)
+ .+++++. +++.+.|+..+
T Consensus 262 ~-~l~~~~~~~~~~~~l~~~~ 281 (296)
T 1h72_C 262 I-AFPKEEFIDEVENILRDYY 281 (296)
T ss_dssp E-EEECGGGHHHHHHHHHHHC
T ss_pred E-EEecHHHHHHHHHHHHHhc
Confidence 8 4444433 55777776544
No 10
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
Probab=99.97 E-value=6e-30 Score=237.58 Aligned_cols=243 Identities=13% Similarity=0.053 Sum_probs=178.9
Q ss_pred EEEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecCcccCC-CcchHHHHHHHHH
Q 019218 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISL-GGGRYQNCLKEIR 87 (344)
Q Consensus 9 ~~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g~~~~~-~~~~~~~~~~~~~ 87 (344)
.++|.|+.|++| +++|+|+++|| ..+|++++++ +|+++ ++. + ..+.+++...+. ..+.+.++++.++
T Consensus 6 ~~~aPakinl~l-~v~g~r~dgyh--~~~sl~~ai~---l~~~v-~~~-~----~~i~i~~~~~~~~~~nlv~~a~~~~~ 73 (271)
T 2v8p_A 6 KVLSPAKINLGL-WVLGRLPSGYH--EILTLYQEIP---FYDEI-YIR-E----GVLRVETNIGIPQEENLVYKGLREFE 73 (271)
T ss_dssp EEEEEEEEEEEE-EEEEECTTSCE--EEEEEEEEEE---EEEEE-EEE-E----SSCEEEESSCCCTTTCHHHHHHHHHH
T ss_pred EEeecceEEeeE-eecccCCCCCc--eEEEEEEEcC---cccEE-EEe-C----CeEEEEeCCCCCCCchHHHHHHHHHH
Confidence 467778888886 78999999999 6899999999 99999 876 2 134454432222 2577888999888
Q ss_pred HHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCccccc
Q 019218 88 SRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRS 167 (344)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~~~~Gs~a~s 167 (344)
+.++. ..+++|+++++||+++|||||||+++|++.|++++++.+++.+||.++|.+++++++++
T Consensus 74 ~~~g~----------------~~g~~i~i~~~IP~g~GLGsSsa~a~a~l~al~~l~~~~l~~~el~~la~~~e~dv~~~ 137 (271)
T 2v8p_A 74 RITGI----------------EINYSIFIQKNIPPGAGLGGGSSNLAVVLKKVNELLGSPLSEEELRELVGSISADAPFF 137 (271)
T ss_dssp HHHCC----------------CCCEEEEEECCSCTTSSSCHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHCTTTGGG
T ss_pred HHhCC----------------CCCeEEEEEeCCCCCCCCchHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCCHHHH
Confidence 87765 35699999999999999999999999999999999999999999999999999999999
Q ss_pred cccCEEEEecccCCCCCCceEEEcCCCCCCC-CceEEEEEECCCCcccCchhhhhhhhhhchhHHHHHhhhhHHHHHHHH
Q 019218 168 LFGGFVKWILGKEGNGSDSLAVQLVDEEHWN-DLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQME 246 (344)
Q Consensus 168 ~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~-~l~~~vlv~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 246 (344)
++||+++.. +.++ ...+++ +| +++++++. |. ..++|.+.++ .++... + .++..+
T Consensus 138 ~~gg~~~~~-g~g~-----~~~~l~----~~~~~~~vl~~-p~--~~~sT~~~~~-~~~~~~---~-------~~~~~~- 192 (271)
T 2v8p_A 138 LLGKSAIGR-GKGE-----VLEPVE----TEISGKITLVI-PQ--VSSSTGRVYS-SLREEH---F-------VTPEYA- 192 (271)
T ss_dssp GTCSEEEEE-TTTT-----EEEECC----CCCCSEEEEEE-CS--SCCCHHHHHH-TCCTTS---C-------CCHHHH-
T ss_pred hcCCeEEEE-EcCC-----EEEEcc----CCCCcEEEEEe-CC--CCCCHHHHHH-hccccc---C-------cchhHH-
Confidence 999998754 3211 245554 25 67766654 43 2455544443 333221 1 123445
Q ss_pred HHHHhCCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEE-EecCCCCcEEEeecC
Q 019218 247 EAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCS-FFAALSGRCYEFCDL 322 (344)
Q Consensus 247 ~al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~-~sgAGpt~~~~~~~~ 322 (344)
.+|.++|++.+++++ . +.||+... .+.|.+.++++.+++ .|+ +. +||+||+++ .++++
T Consensus 193 ~al~~~d~~~~~~~~-~--n~l~~~~~-------~~~p~l~~~~~~~~~----~Ga---a~~mSGsG~~v~-~l~~~ 251 (271)
T 2v8p_A 193 EEKIQRIISGEVEEI-E--NVLGDIAR-------ELYPEINEVYRFVEY----LGF---KPFVSGSGSTVY-FFGGA 251 (271)
T ss_dssp HHHHHHHHTTCGGGC-C--BHHHHHHH-------HHCHHHHHHHHHHHH----TTC---CCEECTTSSCEE-ESSCC
T ss_pred HHhhcCCHHHHHHHH-h--CChhhHhH-------HhChHHHHHHHHHHh----CCC---ccCccccCcCeE-EEeCC
Confidence 899999999998875 3 36787532 356777777776654 565 45 679999988 66553
No 11
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Probab=99.96 E-value=4.5e-27 Score=223.78 Aligned_cols=287 Identities=12% Similarity=0.114 Sum_probs=186.8
Q ss_pred ccccceeEEEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecCcc-cC----CCc
Q 019218 2 AAEKWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE-IS----LGG 76 (344)
Q Consensus 2 ~~~~~~~~~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g~~-~~----~~~ 76 (344)
|.+... ++++||..|-|+ |.+.+.+ +.++++++++ +|++++|+..++.+...+ .++.. .+ ...
T Consensus 8 ~~~~~~--~~~~ApgKi~L~---Geh~~~~---G~~~l~~ai~---~~~~v~v~~~~~~~~~~~-~~~~~~~~~~~~~~~ 75 (332)
T 2hfs_A 8 VKSKTT--GKNIGYGKVILF---GEHFVVH---GAEAIVAGIS---EYTECRLEINPGVPGLQV-DDQRPAIPGYIAQKR 75 (332)
T ss_dssp CCSBCC--SCCEEEEEEEEE---CTTGGGG---TCCEEEEEEE---EEEEEEEEEETTCCSEEE-EECCCCCTTHHHHHH
T ss_pred ccCCCe--EEEEEeEEEEEe---cCCEEEc---CCeEEEEEec---ccEEEEEEEcCCCCCeEE-EecCccccccccccc
Confidence 444445 455666666664 7666543 4679999999 999999987531112233 23321 11 113
Q ss_pred chHHHHHHHHHHHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHH
Q 019218 77 GRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAI 156 (344)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~l 156 (344)
+.+.++++.+++.++.. .+..+++|+++++||.++|||||||+++|++.|++++++.+++.++|.++
T Consensus 76 ~~~~~a~~~~~~~~g~~-------------~~~~g~~i~i~~~iP~g~GLGSSsA~~~a~~~al~~l~~~~l~~~~l~~~ 142 (332)
T 2hfs_A 76 DEQIKAHQLVLDHLKVD-------------LSGDGLKMFIGGPLVPSSGIGASASDVVAFSRALSELYQLNLTDEEVNLS 142 (332)
T ss_dssp HHHHHHHHHHHHHTTBC-------------CSSSEEEEEEECSCCCCTTSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred hhHHHHHHHHHHHcCCc-------------cCCCceEEEEEcCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 44566677776666541 01257999999999999999999999999999999999999999999999
Q ss_pred HHhccC---------ccccccccCEEEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCchhhhhhhhhhc
Q 019218 157 ARQGSG---------SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETS 227 (344)
Q Consensus 157 A~~~~G---------s~a~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~~~~~~~ 227 (344)
|.++|+ +.++|++||++++..+.+ +....+++. .++++++++. |. .+.+|.+.++.+.+..
T Consensus 143 a~~~E~~~~G~~~G~D~~~~~~Gg~~~~~~~~g----~~~~~~~~~---~~~~~~vl~~-~~--~~~~T~~~~~~~~~~~ 212 (332)
T 2hfs_A 143 AFVGEGGYHGTPSGADNTAATYGGLILYRRQNG----KSVFKPIAF---QQRLYLVVVG-TG--INASTAKVVNDVHKMK 212 (332)
T ss_dssp HHHHGGGSSSCCCSHHHHHHHHCEEEEEEECSS----SEEEEEECC---CSCEEEEEEE-CS--CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCcHhHHHHhcCCeEEEecCCC----CcceeeecC---CCCcEEEEEE-CC--CCccHHHHHHHHHHHH
Confidence 987763 457789999988754421 123556642 1466655544 33 3455655554322110
Q ss_pred ----hhHHHHHhhhhHHHHHHHHHHHHhCCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCc
Q 019218 228 ----LLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSP 303 (344)
Q Consensus 228 ----~~~~~~~~~~~~~~~~~l~~al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~ 303 (344)
+.++...++ +..++..++.+|.++|++.|+++|+.|++.++.+ . ...|.+.++++.+++ .|++
T Consensus 213 ~~~~~~~~~~~~~-~~~~~~~~~~al~~~d~~~l~~~~~~~~~~l~~~-~-------~~~p~l~~l~~~~~~----~Ga~ 279 (332)
T 2hfs_A 213 QQQPVQFKRLYDN-YTHIVSQAREALQKGDLQRLGQLMNANHDLCRQI-D-------VSCRELESIVQTCRT----YGAL 279 (332)
T ss_dssp HHCHHHHHHHHHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-T-------CCCHHHHHHHHHHHH----TTCS
T ss_pred HhCHHHHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-C-------CCCHHHHHHHHHHHH----cCCc
Confidence 111112222 3456788999999999999999988776665542 2 245666677666554 6887
Q ss_pred eEEEEecCCCCcEE-EeecCCc--hHHHHHHHHHhhh
Q 019218 304 QVCSFFAALSGRCY-EFCDLKH--IFVLSILSASARE 337 (344)
Q Consensus 304 ~~~~~sgAGpt~~~-~~~~~~~--~~~~~~l~~~~~~ 337 (344)
++.+|||||++++ .+++++. +++.+.|++.+.+
T Consensus 280 -ga~~sGaG~gg~v~~l~~~~~~a~~~~~~l~~~~~~ 315 (332)
T 2hfs_A 280 -GAKLSGTGRGGIAVALAASSDQRDAIVKGLKAKCPE 315 (332)
T ss_dssp -EEEEESSCSSSEEEEEESSHHHHHHHHHHHHHHCTT
T ss_pred -eEEeccCCCCcEEEEEecCcccHHHHHHHHHHHHhc
Confidence 6667799995442 4555432 5677788776543
No 12
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae}
Probab=99.96 E-value=6.7e-27 Score=218.31 Aligned_cols=264 Identities=12% Similarity=0.047 Sum_probs=172.0
Q ss_pred EEEEEecceeEeeeecccccCCCCCCCCCeeEEEe-CCCCceeEEEEEEcCCCCcceEEecCcccCCCcchHHHHHHHHH
Q 019218 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTL-DPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIR 87 (344)
Q Consensus 9 ~~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal-~~~~l~~~~~v~~~~~~~~~~i~i~g~~~~~~~~~~~~~~~~~~ 87 (344)
+++++||..|-|+ |+|.+. +++|++++++ + +|++++|+..+ ..+.+++... .+.+.++.+.+
T Consensus 5 ~~~~~aP~ki~L~---Ge~~~~---~g~~~l~~ai~~---~~~~v~v~~~~----~~~~i~~~~~---~~~~~~~~~~~- 67 (292)
T 2oi2_A 5 VGVGQAHSKIILI---GEHAVV---YGYPAISLPLLE---VEVTCKVVPAE----SPWRLYEEDT---LSMAVYASLEY- 67 (292)
T ss_dssp CEEEEEEEEEEEE---CTTGGG---GTCCEEEEEEEE---EEEEEEEEECS----SCCCCCCCSH---HHHHHHHHHHH-
T ss_pred cEEEEeeeEEEEE---eCCeee---cCCcEEEEEEcC---cEEEEEEEECC----CceEEEecCc---cchhhhhhHHH-
Confidence 3678888888875 888763 4899999999 7 99999998752 2344444311 23333333322
Q ss_pred HHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcc--Cccc
Q 019218 88 SRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGS--GSAC 165 (344)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~~~~--Gs~a 165 (344)
.+. ...+++|+++++||.++|||||||+++|++.|++++++.+++.++|.++|.++| ++..
T Consensus 68 --~~~---------------~~~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~~~~~~l~~~~l~~la~~~E~~~~~~ 130 (292)
T 2oi2_A 68 --LNI---------------TEACIRCEIDSAIPEKRGMGSSAAISIAAIRAVFDYYQADLPHDVLEILVNRAEMIAHMN 130 (292)
T ss_dssp --HTC---------------SCCCEEEEEC----CCGGGSCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHTTCC
T ss_pred --hcc---------------cCCceEEEEEecCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCC
Confidence 232 124689999999999999999999999999999999999999999999998875 3322
Q ss_pred c-------ccccCEEEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCchhhhhhhhhh-chhHHHHHhhh
Q 019218 166 R-------SLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVET-SLLLQHRAKEV 237 (344)
Q Consensus 166 ~-------s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~~~~~~-~~~~~~~~~~~ 237 (344)
| +.+||++.+..+. ...+++. +++.+ +++++.+ .+.+|.+.+. .++. .+..++.+.+
T Consensus 131 p~g~d~~~~~~gg~~~~~~~~-------~~~~~~~--~~~~~---~~i~~~~-~~~sT~~~~~-~l~~~~~~~~~~~~~- 195 (292)
T 2oi2_A 131 PSGLDAKTCLSDQPIRFIKNV-------GFTELEM--DLSAY---LVIADTG-VYGHTREAIQ-VVQNKGKDALPFLHA- 195 (292)
T ss_dssp CCSHHHHHHTCSSCEEEETTT-------EEEECCC--CCSCE---EEEEECS-SCCCHHHHHH-HHHHTGGGGHHHHHH-
T ss_pred CCchhHHHHhcCceEEEEcCC-------CceeecC--CCCCE---EEEEECC-CCCcHHHHHH-HHHHHHhhhHHHHHH-
Confidence 2 5699998774321 1455542 23332 3333432 3455555444 3333 2221333333
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCC--Cc
Q 019218 238 VPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALS--GR 315 (344)
Q Consensus 238 ~~~~~~~l~~al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGp--t~ 315 (344)
....+..++.+|.++|++.|+++|+.+++.|+++. ...|.+.++++.+++ .|++ ++.+||||| ++
T Consensus 196 ~~~~~~~~~~al~~~d~~~l~~~~~~~~~~l~~~~--------~~~p~l~~l~~~~~~----~Ga~-ga~~sGaG~Gg~v 262 (292)
T 2oi2_A 196 LGELTQQAEIAISQKDAEGLGQILSQAHLHLKEIG--------VSSLEADSLVETALS----HGAL-GAKMSGGGLGGCI 262 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------CCCHHHHHHHHHHHT----TTCS-EEEEESSSSSSEE
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHh----CCCc-eeeeccCCCCcEE
Confidence 23356788999999999999999988888888642 355666666666543 6887 666779999 55
Q ss_pred EEEeecC-Cc-hHHHHHHHHHh
Q 019218 316 CYEFCDL-KH-IFVLSILSASA 335 (344)
Q Consensus 316 ~~~~~~~-~~-~~~~~~l~~~~ 335 (344)
+ .++++ +. +++.+.|+...
T Consensus 263 ~-~l~~~~~~~~~~~~~l~~~~ 283 (292)
T 2oi2_A 263 I-ALVTNLTHAQELAERLEEKG 283 (292)
T ss_dssp E-EEESCHHHHHHHHHHHHHHT
T ss_pred E-EEecCchHHHHHHHHHHhcC
Confidence 5 45554 22 45666666554
No 13
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei}
Probab=99.95 E-value=2.4e-26 Score=218.44 Aligned_cols=266 Identities=15% Similarity=0.162 Sum_probs=177.0
Q ss_pred EEEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecCc--ccCCC-cchHHHHHHH
Q 019218 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGK--EISLG-GGRYQNCLKE 85 (344)
Q Consensus 9 ~~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g~--~~~~~-~~~~~~~~~~ 85 (344)
|++++||.-|-|+ |.+.+. +++++|+++++ +|++++++..+ ..++..++. ..+.. ++.+..++..
T Consensus 21 mi~~~APgkinL~---GeH~~~---~Gg~~l~~aI~---~~~~v~v~~~~---~i~i~~~~~~~~~~~~~~~~~~~~~~~ 88 (321)
T 4hac_A 21 MVSCSAPGKIYLF---GEHAVV---YGETAIACAVE---LRTRVRAELND---SITIQSQIGRTGLDFEKHPYVSAVIEK 88 (321)
T ss_dssp CEEEEEEEEEEEE---CTTTGG---GTCCEEEEEEE---EEEEEEEEECS---SEEEEETTEEESSCTTTSHHHHHHHHH
T ss_pred EEEEEeeEEEEEE---ccCEEE---cCCEEEEEEec---cCEEEEEEECC---CEEEEECCCCcccccchhHHHHHHHHH
Confidence 3778888888875 766544 36899999999 99999998653 334443332 12222 2334344444
Q ss_pred HHHHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcc----
Q 019218 86 IRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGS---- 161 (344)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~~~~---- 161 (344)
+++ ++. ..+++|+++++||.++|||||||+++|++.|++++++.+++.++|+++|.++|
T Consensus 89 l~~-~~~----------------~~g~~i~i~~~iP~g~GLGSSsa~~va~~~al~~l~~~~l~~~~l~~la~~~e~~~~ 151 (321)
T 4hac_A 89 MRK-SIP----------------INGVFLTVDSDIPVGSGLGSSAAVTIASIGALNELFGFGLSLQEIAKLGHEIEIKVQ 151 (321)
T ss_dssp HTT-TSC----------------CCCEEEEEEECCCSCTTCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH
T ss_pred HHH-hCC----------------CCCEEEEEECCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Confidence 332 222 35799999999999999999999999999999999999999999999998877
Q ss_pred --C---ccccccccCEEEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCchhhhhhh--hh-hchh-HHH
Q 019218 162 --G---SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRES--VE-TSLL-LQH 232 (344)
Q Consensus 162 --G---s~a~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~~~--~~-~~~~-~~~ 232 (344)
+ ++++|++||++++ +.. +++. +|+++++++. |. .+.+|.+.++.+ ++ ..+. +++
T Consensus 152 g~~~~~D~~~~~~Gg~~~~--~~~--------~~l~----~p~~~~vlv~-p~--~~~sT~~~~~~~~~l~~~~~~~~~~ 214 (321)
T 4hac_A 152 GAASPTDTYVSTFGGVVTI--PER--------RKLK----TPDCGIVIGD-TG--VFSSTKELVANVRQLRESYPDLIEP 214 (321)
T ss_dssp SCCCSHHHHHHHHCSEEEE--TTC--------CEEC----CCCCEEEEEE-CC--CCCCHHHHHHHHHHHHHHCHHHHHH
T ss_pred CCCcHHHHHHHHcCCeEEE--cCC--------ceec----cCCCEEEEEE-CC--CCccHHHHHHHHHHHHhcCHHHHHH
Confidence 3 4578999999876 221 1222 2456665554 33 234454443332 11 1121 233
Q ss_pred HHhhhhHHHHHHHHHHHHhCCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCC
Q 019218 233 RAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAAL 312 (344)
Q Consensus 233 ~~~~~~~~~~~~l~~al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAG 312 (344)
.+.+ ....+..++.+|.++|++.|+++|+.++..+.+... ..|.+.++++.+++ .|++ ++..||||
T Consensus 215 ~~~~-~~~~~~~~~~al~~~d~~~lg~~~~~~~~~~~~~~v--------~~p~l~~l~~~a~~----~Ga~-ga~~SGaG 280 (321)
T 4hac_A 215 LMTS-IGKISRIGEQLVLSGDYASIGRLMNVNQGLLDALGV--------NILELSQLIYSARA----AGAF-GAKITGAG 280 (321)
T ss_dssp HHHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC--------CCHHHHHHHHHHHH----TTCS-EEEECSSC
T ss_pred HHHH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCC--------CCHHHHHHHHHHHH----CCCC-EEEECccC
Confidence 3333 244567789999999999999999876655543322 46677777777654 6887 56666999
Q ss_pred CCcEE-EeecCCc-hHHHHHHHHH
Q 019218 313 SGRCY-EFCDLKH-IFVLSILSAS 334 (344)
Q Consensus 313 pt~~~-~~~~~~~-~~~~~~l~~~ 334 (344)
|++++ .+++++. +++.+.|++.
T Consensus 281 ~GG~v~al~~~~~a~~~~~~l~~~ 304 (321)
T 4hac_A 281 GGGCMVALTAPEKCNQVAEAVAGA 304 (321)
T ss_dssp SSSEEEEEECSTTHHHHHHHHHHT
T ss_pred CCCEEEEEcCHHHHHHHHHHHHhC
Confidence 96442 4554443 6677777654
No 14
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5
Probab=99.95 E-value=1.5e-27 Score=221.67 Aligned_cols=249 Identities=13% Similarity=0.078 Sum_probs=174.4
Q ss_pred EEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecCcccCCCcchHHHHHHHHHHHcc
Q 019218 12 AQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIRSRAC 91 (344)
Q Consensus 12 ~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g~~~~~~~~~~~~~~~~~~~~~~ 91 (344)
|.|+.|+.| ...|+|.++|| ..+|++++++ +|++++++.+ ..++..++ ..+ ..+.+.++++.+++.++
T Consensus 5 aPakinl~l-~v~g~r~dgyh--~~~sl~~ai~---l~~~v~~~~~----~~~i~~~~-~~~-~~n~v~~a~~~~~~~~g 72 (275)
T 1uek_A 5 APAKVNLGL-SVRFRREDGYH--ELHTLFAPFS---LADRLVVEPV----SSGLHFQG-PYG-RENLAYRAASLYLEAAG 72 (275)
T ss_dssp EEEEEEEEE-EEEEECTTSSE--EEEEEEEEEE---EEEEEEEEEE----SSCEEEES-TTG-GGSHHHHHHHHHHHHTT
T ss_pred ecCeEEEee-eecCcCCCCCc--eeeEEEEEcC---CCCEEEEEEC----cEEEEEcC-CCC-CccHHHHHHHHHHHHhC
Confidence 777777776 45799999999 6999999999 9999999862 24566665 223 35778889998888776
Q ss_pred ccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCccccccccC
Q 019218 92 DVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGG 171 (344)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~~~~Gs~a~s~~GG 171 (344)
. ..+++|+++++||.++|||||||+++|++.|++++++.++ +|+++|.+++++++++++||
T Consensus 73 ~----------------~~g~~i~i~~~IP~g~GLGSSsa~a~a~l~al~~l~~~~l---~l~~la~~~g~dv~~~~~Gg 133 (275)
T 1uek_A 73 Q----------------PGGVRILLEKRIPEGAGLGGGSSDAAQVLLALQALYPAEV---DLFALARTLGADVPFFLLGR 133 (275)
T ss_dssp C----------------CCEEEEEEECCSCSSSSSCHHHHHHHHHHHHHHHHSCSCC---CHHHHHHHHCTTHHHHHHCS
T ss_pred C----------------CCCEEEEEecCCCCcCcccHHHHHHHHHHHHHHHHcCCCh---HHHHHHHHhCCChHHHhcCC
Confidence 4 3579999999999999999999999999999999999998 89999999999999999999
Q ss_pred EEEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCchhhhhhhhhhchhHHHHHhhhhHHHHHHHHHHHHh
Q 019218 172 FVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQN 251 (344)
Q Consensus 172 ~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~ 251 (344)
+++.. +.++ ...+++ .|+++++++. |. ..++|.+.++. ++... +.. ...+..++.+|.+
T Consensus 134 ~~~~~-g~g~-----~~~~l~----~~~~~~vl~~-p~--~~~sT~~~~~~-~~~~~-----~~~--~~~~~~~~~al~~ 192 (275)
T 1uek_A 134 GAEAR-GVGE-----RLKPLA----LPPVPAVVFF-PG--LRVPTPLVYRA-VRPED-----FGP--DLPVEAILEALAR 192 (275)
T ss_dssp EEEEE-TTTT-----EEEEEC----CCCEEEEEEE-CC--CCCCHHHHHHT-CCGGG-----CCC--CCCHHHHHHHHHH
T ss_pred eEEEE-ccCc-----eeEEcc----CCCcEEEEEe-CC--CCCchHHHHHh-Cchhh-----ccc--CCChHHHHHHHHh
Confidence 98754 3211 245553 2566666554 43 34555554443 22110 100 1234567788887
Q ss_pred CCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCCCcEEEeecCC-c-hHHHH
Q 019218 252 HDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRCYEFCDLK-H-IFVLS 329 (344)
Q Consensus 252 ~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGpt~~~~~~~~~-~-~~~~~ 329 (344)
+ ++. +.| | .|+. ++..+.|.+.++++.+++ .|++ ++.+|||||+++ ++++++ . +++.+
T Consensus 193 ~-~~~--~~~--n--~l~~-------~~~~~~p~l~~l~~~~~~----~Ga~-ga~~SGsG~~v~-~l~~~~~~~~~~~~ 252 (275)
T 1uek_A 193 G-EEP--PYW--N--SLEG-------PAFRLFPELKEVRGRMRA----LGLR-GVLMSGSGSAFF-GLAEGPDHARRAAE 252 (275)
T ss_dssp T-CCC--SCC--B--TTHH-------HHHHHCTHHHHHHHHHHH----TTCE-EEEECTTSSCEE-EECSSHHHHHHHHH
T ss_pred c-ccc--ccc--c--chHH-------HHHHhChHHHHHHHHHHh----CCCC-EEEEeccccCeE-EEeCCHHHHHHHHH
Confidence 7 544 333 3 2432 223356788888877654 6886 677789999988 555432 1 33444
Q ss_pred HHH
Q 019218 330 ILS 332 (344)
Q Consensus 330 ~l~ 332 (344)
.++
T Consensus 253 ~l~ 255 (275)
T 1uek_A 253 ALR 255 (275)
T ss_dssp HHT
T ss_pred Hhh
Confidence 443
No 15
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus}
Probab=99.95 E-value=2.3e-25 Score=209.85 Aligned_cols=268 Identities=15% Similarity=0.136 Sum_probs=171.2
Q ss_pred EEEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCce-eEEEEEEcCCCCc-ceEEecCc--ccCC---CcchHHH
Q 019218 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLC-TTTTVAVSPSFDQ-DRMWLNGK--EISL---GGGRYQN 81 (344)
Q Consensus 9 ~~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~-~~~~v~~~~~~~~-~~i~i~g~--~~~~---~~~~~~~ 81 (344)
+++++||.+|.|+ |+|.+ |+ +.++|+++++ ++ ++++|+..++. . .++...+. ..+. ..+.+.+
T Consensus 6 ~~~~~APgkinL~---Ge~~d-~~--g~~~l~~ai~---~~~~~v~v~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~v~~ 75 (308)
T 2x7i_A 6 KGYGESTGKIILI---GEHAV-TF--GEPAIAVPFN---AGKIKVLIEALESG-NYSSIKSDVYDGMLYDAPDHLKSLVN 75 (308)
T ss_dssp EEEEEEEEEEEEE---EBTTC-CT--TSCEEEEEEE---EEEEEEEEEECCTT-CCCEEEEEECSSCCCCTTSCHHHHHH
T ss_pred ceEEEEeeEEEEE---ecCee-ec--CCeEEEEEEc---CCEEEEEEEECCCC-CeeEEEecCCCCChhhhhHHHHHHHH
Confidence 3788999999886 88877 54 7899999999 74 88888875421 2 33332211 1111 1234445
Q ss_pred HHHHHHHHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcc
Q 019218 82 CLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGS 161 (344)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~~~~ 161 (344)
+++.+++. ..+++|+++++||.++|||||||+++|++.|++++++.++++++|+++|.++|
T Consensus 76 ~~~~~~~~-------------------~~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~l~~~~l~~~~l~~la~~~E 136 (308)
T 2x7i_A 76 RFVELNNI-------------------TEPLAVTIQTNLPPSRGLGSSAAVAVAFVRASYDFLGKSLTKEELIEKANWAE 136 (308)
T ss_dssp HHHHHTTC-------------------CSCEEEEEEECCCTTSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHhh-------------------CCCeEEEEeccCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 55444321 13689999999999999999999999999999999999999999999999885
Q ss_pred --------C-ccccccccCEEEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCchhhhhhhhhh----ch
Q 019218 162 --------G-SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVET----SL 228 (344)
Q Consensus 162 --------G-s~a~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~~~~~~----~~ 228 (344)
| +++.+.+||++.++.+. ...+++. + +++. +++++.+ .+.+|.+.++. ++. .+
T Consensus 137 ~~~~g~~sG~d~~~~~~g~~~~~~~g~-------~~~~~~~--~-~~~~--~vi~~~~-~~~sT~~~~~~-l~~~~~~~~ 202 (308)
T 2x7i_A 137 QIAHGKPSGIDTQTIVSGKPVWFQKGH-------AETLKTL--S-LDGY--MVVIDTG-VKGSTRQAVHD-VHKLCEDPQ 202 (308)
T ss_dssp HHHHSSCCHHHHHHHHHTSCEEEETTE-------EEECSCC--C-BSSE--EEEEECC-C--CCSCCCC---------CC
T ss_pred HHHCCCCchHHHHHhhCCceEEEEcCC-------CceEecc--C-CCce--EEEEECc-CCCCHHHHHHH-HHHHHhcCc
Confidence 3 23556789998776331 1344432 1 2333 3333433 33445444332 221 11
Q ss_pred hHHHHHhhhhHHHHHHHHHHHHhCCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEE
Q 019218 229 LLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSF 308 (344)
Q Consensus 229 ~~~~~~~~~~~~~~~~l~~al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~ 308 (344)
.... +.+ ...++..++.+|.++|++.|+++|++++..++++. ...|.+.++++.+++ .|++ ++.+
T Consensus 203 ~~~~-~~~-~~~~~~~~~~al~~~d~~~l~~~~~~~~~~~~~~~--------~~~p~l~~l~~~~~~----~Ga~-ga~~ 267 (308)
T 2x7i_A 203 YMSH-VKH-IGKLVLRASDVIEHHKFEALADIFNECHADLKALT--------VSHDKIEQLMKIGKE----NGAI-AGKL 267 (308)
T ss_dssp HHHH-HHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS--------CCCHHHHHHHHHHHH----TTCS-EEEE
T ss_pred hHHH-HHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHH----CCCc-EEEe
Confidence 1111 222 13456778899999999999999866555555421 245667777766654 6887 6677
Q ss_pred ecCCC--CcEEEeecC-Cc-hHHHHHHHHHh
Q 019218 309 FAALS--GRCYEFCDL-KH-IFVLSILSASA 335 (344)
Q Consensus 309 sgAGp--t~~~~~~~~-~~-~~~~~~l~~~~ 335 (344)
||||| +++ .++++ +. +++.+.|+..+
T Consensus 268 sGaG~GG~v~-~l~~~~~~~~~~~~~l~~~~ 297 (308)
T 2x7i_A 268 TGAGRGGSML-LLAKDLPTAKNIVKAVEKAG 297 (308)
T ss_dssp SBTTTCSSEE-EEESSHHHHHHHHHHHHHTT
T ss_pred eccCCCcEEE-EEeCChhHHHHHHHHHHhCC
Confidence 79999 666 55554 22 45666665544
No 16
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A*
Probab=99.94 E-value=9.4e-25 Score=208.95 Aligned_cols=274 Identities=12% Similarity=0.105 Sum_probs=178.0
Q ss_pred EEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecCcc-------c--C--CC-cc
Q 019218 10 VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE-------I--S--LG-GG 77 (344)
Q Consensus 10 ~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g~~-------~--~--~~-~~ 77 (344)
++++||..|.|+ |++.+.+. ..+++++++ +|++++|+..+ ...+.+.+.. . + .. .+
T Consensus 2 ~~~~aP~ki~L~---Ge~~d~~~---~~~l~~ai~---~~~~v~v~~~~---~~~i~i~~~~~~~~~~~l~~~~~~~~~~ 69 (350)
T 2cz9_A 2 IKVKSPGRVNLI---GEHTDYTY---GYVMPMAIN---LYTKIEAEKHG---EVILYSEHFGEERKFSLNDLRKENSWID 69 (350)
T ss_dssp EEEEEEEEEEEE---CTTCGGGT---CEEEEEEEE---EEEEEEEEEES---SEEEEETTTTEEEEECTTCCCCCSSTHH
T ss_pred eEEEeccEEEEe---ecChhhCC---CEEEEEEee---ceEEEEEEECC---CCeEEEEECCCCccccccCCCCCCcHHH
Confidence 677888888885 88888544 358999999 99999998754 2345553321 1 1 11 23
Q ss_pred hHHHHHHHHHHHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHH
Q 019218 78 RYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIA 157 (344)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA 157 (344)
.+..+++.+++ .+. ...+++|+++++||.++|||||||+++|++.|++++++.+++.++|+++|
T Consensus 70 ~~~~~~~~l~~-~~~---------------~~~g~~i~i~s~IP~g~GLGSSaA~~vA~~~al~~l~~~~l~~~el~~la 133 (350)
T 2cz9_A 70 YVKGIFWVLKE-SDY---------------EVGGIKGRVSGNLPLGAGLSSSASFEVGILETLDKLYNLKLDSLSKVLLA 133 (350)
T ss_dssp HHHHHHHHHHH-TTC---------------CCCEEEEEEECSCCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHh-cCC---------------CCCCeEEEEECCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 44445555544 232 12578999999999999999999999999999999999999999999999
Q ss_pred HhccCc---cccc-------cccC---EEEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCchhhhhh--
Q 019218 158 RQGSGS---ACRS-------LFGG---FVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRE-- 222 (344)
Q Consensus 158 ~~~~Gs---~a~s-------~~GG---~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~~-- 222 (344)
.++|.+ ++.+ .+|| ++.++... ....+++.+ ++++++++. |.....+++.. +..
T Consensus 134 ~~~e~~~~g~~~gi~d~~~~~~g~~~~~~~~d~~~------~~~~~l~~~---~~~~~vl~~-~~~~~~~~t~~-~~~r~ 202 (350)
T 2cz9_A 134 KKAENEFVGVPCGILDQFAVVFGREGNVIFLDTHT------LDYEYIPFP---KDVSILVFY-TGVRRELASSE-YAERK 202 (350)
T ss_dssp HHHHHHTTCCCCCSHHHHHHHHCCTTEEEEEETTT------CCEEEEECC---TTEEEEEEE-CSCC----CHH-HHHHH
T ss_pred HHHHHHhcCCCccchhHHHHHhcCCCeEEEEecCC------CcEEEEcCC---CCcEEEEEE-CCCCCccccch-HHHHH
Confidence 988752 2233 3443 33333211 124555421 466666554 33222233322 211
Q ss_pred ------------------------hhhhch--hHHHHHhhhhHHHHHHHHHHHHhCCHHHHHHHHHHhhhHHhhhhccCC
Q 019218 223 ------------------------SVETSL--LLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTS 276 (344)
Q Consensus 223 ------------------------~~~~~~--~~~~~~~~~~~~~~~~l~~al~~~D~~~l~~~~~~d~~~lh~~~~~~~ 276 (344)
.++... ...+.+.+ ..++..++.+|.++|++.|+++|+.+++.||+++.
T Consensus 203 ~~~~~a~~~~~~~~lr~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~al~~~d~~~lg~~~~~~~~~l~~~~~--- 277 (350)
T 2cz9_A 203 HIAEESLKILGKGSSKEVREGELSKLPPLHRKFFGYIVRE--NARVLEVRDALKEGNVEEVGKILTTAHWDLAKNYE--- 277 (350)
T ss_dssp HHHHHHHHHHTCSCGGGCCGGGGGGSCHHHHHHHHHHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHhChhhhhhCCHHHHhhCCHHHHHHHHHHhhH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhc---
Confidence 011100 11222222 34588899999999999999999999899997433
Q ss_pred CCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCC--CCcEEEeecCC-chHHHHHHHHHhhh
Q 019218 277 PPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAAL--SGRCYEFCDLK-HIFVLSILSASARE 337 (344)
Q Consensus 277 p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAG--pt~~~~~~~~~-~~~~~~~l~~~~~~ 337 (344)
. ..|.+.++++.+++ .|++ ++.+|||| |+++ .+++++ .+++.+.|++.+++
T Consensus 278 ---~-~~p~l~~l~~~~~~----~Ga~-ga~lsGaG~G~~v~-~l~~~~~~~~~~~~l~~~~~~ 331 (350)
T 2cz9_A 278 ---V-SCKELDFFVERALK----LGAY-GARLTGAGFGGSAI-ALVDKEDAETIGEEILREYLK 331 (350)
T ss_dssp ---C-CCHHHHHHHHHHHH----TTCS-EEEECSSCSSSEEE-EEEEGGGHHHHHHHHHHHHHH
T ss_pred ---C-CCHHHHHHHHHHHH----cCCC-EEEEecCCCceEEE-EEEchhhHHHHHHHHHHHHHH
Confidence 2 56777777777654 6887 66677999 8877 555544 36688888776654
No 17
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A* 3gon_A*
Probab=99.94 E-value=3.7e-25 Score=211.64 Aligned_cols=282 Identities=11% Similarity=0.064 Sum_probs=185.4
Q ss_pred eEEEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecCcc--cC---C-CcchHHH
Q 019218 8 LMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE--IS---L-GGGRYQN 81 (344)
Q Consensus 8 ~~~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g~~--~~---~-~~~~~~~ 81 (344)
|+++++||..+-|+ |.|-..|+ ++|+|++||+ +|++++|+..+ ..++.-++.+ .. . ..+.+..
T Consensus 2 mmi~~~aPgkv~L~---GeH~v~y~--G~~~l~~Ai~---~~~~v~v~~~~---~~~i~s~~~~~~~~~~~~~~~~~v~~ 70 (337)
T 2pg9_A 2 MMIAVKTCGKLYWA---GEYAILEP--GQLALIKDIP---IYMRAEIAFSD---SYRIYSDMFDFAVDLRPNPDYSLIQE 70 (337)
T ss_dssp -CEEEEEEEEEEEE---CTTGGGST--TCEEEEEEEE---EEEEEEEEECS---SCEEEETTSSSCBCSSCCTTTHHHHH
T ss_pred ceEEEeeCceEEEe---ccceEecC--CCEEEEEEcc---ccEEEEEEeCC---cEEEecCCCCceeeecCCCCcHHHHH
Confidence 78899999999885 77766664 8999999999 99999998653 2344433211 11 1 1245566
Q ss_pred HHHHHHHHccccccccccccccccccccccEEEEEeeCCCCc---ccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 019218 82 CLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTA---AGLASSAAGFACLVFSLAKLMNLKENQSQLSAIAR 158 (344)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~---~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~ 158 (344)
+++.+.++++.. |. +..+++|+++++||.+ +|||||||+++|++.|++++++++++.++|.++|.
T Consensus 71 ~i~~~~~~~~~~-----g~-------~~~g~~i~i~s~iP~~g~k~GLgSSaa~~va~~~al~~~~~~~l~~~~l~~la~ 138 (337)
T 2pg9_A 71 TIALMGDFLAVR-----GQ-------NLRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTS 138 (337)
T ss_dssp HHHHHHHHHHHT-----TC-------CCCCEEEEEECCSEETTEECSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhc-----CC-------CCCCEEEEEEccCCCCCCCccccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 777777655321 11 1357999999999999 99999999999999999999999999999999998
Q ss_pred hcc--------C-ccccccccCEEEEec-ccCC---------------CCCCceEEEcCCCCCCCCceEEEEEECCCCcc
Q 019218 159 QGS--------G-SACRSLFGGFVKWIL-GKEG---------------NGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKE 213 (344)
Q Consensus 159 ~~~--------G-s~a~s~~GG~v~~~~-~~~~---------------~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~ 213 (344)
+.| | +.++|+|||++.+.. +... ........+++.+ ++++++++.+. .+
T Consensus 139 ~~E~~~~~~~~~~D~~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~---~~~~lvl~~~~---~~ 212 (337)
T 2pg9_A 139 AVLLKRGDNGSMGDLACIAAEDLVLYQSFDRQKVAAWLEEENLATVLERDWGFSISQVKPT---LECDFLVGWTK---EV 212 (337)
T ss_dssp HHHHHTTCCSCSHHHHHHHHTSCEEEECCCHHHHHHHHHHSCHHHHHHSCCCCEEEECCCC---SCCEEEEEECC---CC
T ss_pred HHHHHhCCCCCHHHHHHHHhCCEEEEecCChHHhhhhhcccchhhhcccccccceeeecCC---CCceEEEEECC---Cc
Confidence 764 2 357899999987642 1100 0001124556431 35666555433 23
Q ss_pred cCchhhhhhhhhhchhHHHHHhhhhHHHHHHHHHHHHhCCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHH
Q 019218 214 TSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYV 293 (344)
Q Consensus 214 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v 293 (344)
.+|.+ +++.++... .++.+.+ ...++..++.+|.++|++.|+++|..++..|+++.. ....|.+.++++.+
T Consensus 213 ~~T~~-~~~~~~~~~-~~~~~~~-~~~~~~~~~~aL~~~d~~~lg~~m~~~~~~l~~l~~------~v~~p~l~~l~~~a 283 (337)
T 2pg9_A 213 AVSSH-MVQQIKQNI-NQNFLTS-SKETVVSLVEALEQGKSEKIIEQVEVASKLLEGLST------DIYTPLLRQLKEAS 283 (337)
T ss_dssp CCHHH-HHHHHGGGC-CHHHHHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCT------TTCCHHHHHHHHTT
T ss_pred cchHH-HHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC------cCCCHHHHHHHHHH
Confidence 44444 443333321 1334443 356778899999999999999999888777776542 12566777777765
Q ss_pred HHHHhhcCCceEEEEecCCCCcE-EEeecCCc--hHHHHHHHH
Q 019218 294 ERWNRSVGSPQVCSFFAALSGRC-YEFCDLKH--IFVLSILSA 333 (344)
Q Consensus 294 ~~~~~~~g~~~~~~~sgAGpt~~-~~~~~~~~--~~~~~~l~~ 333 (344)
++ .|++ + ..||||.+.| +++++++. +++.+.+++
T Consensus 284 ~~----~Ga~-a-k~sGaGgGg~vial~~~~~~~~~~~~~l~~ 320 (337)
T 2pg9_A 284 QD----LQAV-A-KSSGAGGGDCGIALSFDAQSTKTLKNRWAD 320 (337)
T ss_dssp TT----SSEE-E-EECTTCSSSEEEEEECSHHHHHHHHHHHHH
T ss_pred HH----CCCE-E-EEeCCCCccEEEEEECCHHHHHHHHHHHHH
Confidence 43 6875 5 4559994443 15554321 334444443
No 18
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Probab=99.94 E-value=1.1e-24 Score=214.19 Aligned_cols=278 Identities=14% Similarity=0.107 Sum_probs=180.4
Q ss_pred EEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecCcc--------cCC------C
Q 019218 10 VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE--------ISL------G 75 (344)
Q Consensus 10 ~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g~~--------~~~------~ 75 (344)
++++||..|.|+ |.+.+.+ ++++|+++++ +|++++++..++ ...++...+.. .+. .
T Consensus 49 ~~~~APgkv~L~---Geh~d~~---G~~~l~~aI~---l~~~v~v~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 118 (419)
T 1pie_A 49 EYFFSPGRINLI---GEHTDYN---GGYVFPASIT---IGTTGLARLRED-KKVKLYSENFPKLGVIEFDLDEVEKKDGE 118 (419)
T ss_dssp EEEEEEEEEEEE---CCSCTTT---TCEEEEEEEE---EEEEEEEEECSS-SEEEEEETTCGGGCCEEEETTCTTSCCTT
T ss_pred EEEEeeEEEEEc---ccceeeC---CCEEEEEEEc---ccEEEEEEECCC-CEEEEEECCCCCcceeEEecccccCCCCc
Confidence 678999999995 8887643 5789999999 999999987542 12233333211 110 1
Q ss_pred --cchHHHHHHHHHHHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHH
Q 019218 76 --GGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQL 153 (344)
Q Consensus 76 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el 153 (344)
.+.+..+++.+++. +.. + ..+++|+++++||.++|||||||+++|++.|++++++.+++.++|
T Consensus 119 ~~~n~v~~~~~~l~~~-g~~-------------~-~~g~~i~i~s~IP~gaGLGSSaA~~vA~~~al~~l~g~~ls~~el 183 (419)
T 1pie_A 119 LWSNYVKGMIVMLKGA-GYE-------------I-DKGFELLIKGEIPTASGLSSSASLELLVGVVLDDLFNLNVPRLEL 183 (419)
T ss_dssp CTHHHHHHHHHHHHHT-TCC-------------C-CSCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred CHHHHHHHHHHHHHHh-CCC-------------C-CCCEEEEEECCCCCCCChhHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 24455566666553 210 0 257899999999999999999999999999999999999999999
Q ss_pred HHHHHhcc--------C--ccccccccC--EEEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCch----
Q 019218 154 SAIARQGS--------G--SACRSLFGG--FVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSST---- 217 (344)
Q Consensus 154 ~~lA~~~~--------G--s~a~s~~GG--~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~---- 217 (344)
+++|.++| | +.++|+||| .+++..+.+ ....+++. ++++++++++. |.. +.++.
T Consensus 184 ~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~d~~~-----~~~~~l~~--~~~~~~~vl~~-~~~--~~~t~~~~y 253 (419)
T 1pie_A 184 VQLGQKTENDYIGVNSGILDQFAIGFGEVKKAIELDCNT-----LKYEMVPV--ELRDYDIVIMN-TNK--PRALTESKY 253 (419)
T ss_dssp HHHHHHHHHHTTCCCCCSHHHHHHHHCBTTEEEEEETTT-----CCEEEEEC--CCTTEEEEEEE-CCC--CCCTTCHHH
T ss_pred HHHHHHHHHHhcCCCccchhHHHHHhccCCeEEEeecCC-----CceEEeec--CCCCcEEEEEE-CCC--ccccccchH
Confidence 99998864 2 447799998 333322211 12455542 12456655543 332 12221
Q ss_pred -------hhhhhhhhh----------ch--------------hH---HHHHhhhhHHHHHHHHHHHHhCCHHHHHHHHHH
Q 019218 218 -------TGMRESVET----------SL--------------LL---QHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCA 263 (344)
Q Consensus 218 -------~~~~~~~~~----------~~--------------~~---~~~~~~~~~~~~~~l~~al~~~D~~~l~~~~~~ 263 (344)
+..++.+++ .+ .+ ...+.+ ..++..++.+|.++|++.|+++|+.
T Consensus 254 ~~r~~~~~~a~~~l~~~~~v~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~v~e--~~r~~~~~~al~~~d~~~lg~lm~~ 331 (419)
T 1pie_A 254 NERFAETREALKRMQTRLDIQSLGELSNEEFDANTDLIGDETLIKRARHAVYE--NNRTKIAQKAFVAGNLTKFGELLNA 331 (419)
T ss_dssp HHHHHHHHHHHHHHHHHCCCSSGGGCCHHHHHHTGGGTCCHHHHHHHHHHHHH--HHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccCchhhCCHHHHHHHHhhcCcHHHHHHHHHHHHH--HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 111112210 00 00 111222 2357889999999999999999998
Q ss_pred hhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhc-CCceEEEEecCC--CCcEEEeecCCc-hHHHHHHHHHhhh
Q 019218 264 DSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSV-GSPQVCSFFAAL--SGRCYEFCDLKH-IFVLSILSASARE 337 (344)
Q Consensus 264 d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~-g~~~~~~~sgAG--pt~~~~~~~~~~-~~~~~~l~~~~~~ 337 (344)
+++.|++.+. ...|.+.++++.+++ . |++ ++.+|||| |+++ .+++++. +++.+.|++.+++
T Consensus 332 ~~~~l~~~~~-------~~~p~l~~l~~~a~~----~~Ga~-ga~lsGaG~Gg~v~-al~~~~~a~~~~~~l~~~~~~ 396 (419)
T 1pie_A 332 SHASLKDDYE-------VTGLELDTLAETAQK----QAGVL-GARMTGAGFGGCAI-ALVAHDNVSAFRKAVGQVYEE 396 (419)
T ss_dssp HHHHHHHTSC-------CCCHHHHHHHHHHHH----STTEE-EEEECSSCSSSEEE-EEEEGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhC-------CCCHHHHHHHHHHHh----cCCCc-eeeEecCCCCeEEE-EEEchhhHHHHHHHHHHHHHH
Confidence 8888886432 256677777777654 5 887 56677999 6666 4555443 6788888776553
No 19
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A*
Probab=99.94 E-value=1.2e-26 Score=216.81 Aligned_cols=237 Identities=11% Similarity=0.057 Sum_probs=162.2
Q ss_pred EEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecCc--ccCCCcchHHHHHHHHH
Q 019218 10 VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGK--EISLGGGRYQNCLKEIR 87 (344)
Q Consensus 10 ~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g~--~~~~~~~~~~~~~~~~~ 87 (344)
++|.|+.|+.| +..|+|.|+|| ..+|++++++ +|++++++..++ ..+.+.+. ..+...+.+.++++.++
T Consensus 5 ~~apaKinL~L-~v~g~~~dGyh--~l~sl~~ai~---l~~~v~v~~~~~---~~i~i~~~~~~~~~~~nlv~~a~~~~~ 75 (283)
T 2ww4_A 5 WPSPAKLNLFL-YITGQRADGYH--TLQTLFQFLD---YGDTISIELRDD---GDIRLLTPVEGVEHEDNLIVRAARLLM 75 (283)
T ss_dssp EEEEEEEEEEE-EEEEECTTSCE--EEEEEEEEEE---EEEEEEEEEESS---SCEEECSCBTTBCGGGSHHHHHHHHHH
T ss_pred ccCceeEEeee-eccCCCCCCCc--ceEEEEEECC---CCcEEEEEECCC---CcEEEEeCCCCCCCcccHHHHHHHHHH
Confidence 44778888888 45899999999 5889999999 999999987542 24666543 12222577888888888
Q ss_pred HHc------cccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcc
Q 019218 88 SRA------CDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGS 161 (344)
Q Consensus 88 ~~~------~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~~~~ 161 (344)
+.+ +. ..+++|+++++||.++|||||||+++|++.|++++++.+++.++|+++|.+++
T Consensus 76 ~~~~~~~~~g~----------------~~g~~i~i~~~IP~g~GLGsSsa~~~a~l~al~~l~~~~l~~~~l~~la~~~e 139 (283)
T 2ww4_A 76 KTAADSGRLPT----------------GSGANISIDKRLPMGGGLGGGSSNAATVLVALNHLWQCGLSMDELAEMGLTLG 139 (283)
T ss_dssp HHHHHTTCSCT----------------TCEEEEEEECCCC-CTTSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTC
T ss_pred HHhhhhcccCC----------------CCceEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhC
Confidence 766 43 35799999999999999999999999999999999999999999999999999
Q ss_pred CccccccccCEEEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCchhhhhhhhhhchhHHHHHhhhhHHH
Q 019218 162 GSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKR 241 (344)
Q Consensus 162 Gs~a~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (344)
++++++++||+++.. +.++ ...+++ +|+++++++. |. ..++|.+.+.. .+ .+ .++...+
T Consensus 140 ~dv~~~~~gg~~~~~-g~g~-----~~~~l~----~~~~~~vl~~-p~--~~~sT~~~~~~-~~-~~-~~~~~~~----- 198 (283)
T 2ww4_A 140 ADVPVFVRGHAAFAE-GVGE-----ILTPVD----PPEKWYLVAH-PG--VSIPTPVIFKD-PE-LP-RNTPKRS----- 198 (283)
T ss_dssp TTHHHHHHTBCEEEE-TTTT-----EEEECC----CCCCEEEEEC-CS--CCCCHHHHHTC-TT-SC-CCCCCCC-----
T ss_pred CCHHHhhcCCeEEEE-ecCc-----cceEcC----CCCcEEEEEe-CC--CCCchHHHHhc-cc-cc-ccchHHH-----
Confidence 999999999998643 3211 245553 2566655543 43 34555554432 21 11 1111111
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCCCcEEEeec
Q 019218 242 IVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRCYEFCD 321 (344)
Q Consensus 242 ~~~l~~al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGpt~~~~~~~ 321 (344)
+ .+|.++++ . | .++ |++..+.|.+.++++.+++ .| ++.+||||||++ .+++
T Consensus 199 l----~~l~~~~~-------~-n--d~~-------~~~~~~~p~l~~i~~~~~~----~G---~a~~SGsG~tvf-~l~~ 249 (283)
T 2ww4_A 199 I----ETLLKCEF-------S-N--DCE-------VIARKRFREVDAVLSWLLE----YA---PSRLTGTGACVF-AEFD 249 (283)
T ss_dssp H----HHHHTSCC-------C-B--TTH-------HHHHHHCHHHHHHHHHHHT----TS---CEEECTTSSCEE-EEES
T ss_pred H----HHHHhhhh-------c-C--chH-------HHHHhcChHHHHHHHHHHH----cC---CceECCcccceE-EEeC
Confidence 1 13444442 1 1 222 3334567777887777553 56 346779999998 5554
No 20
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Probab=99.93 E-value=4.6e-24 Score=201.67 Aligned_cols=264 Identities=14% Similarity=0.188 Sum_probs=164.3
Q ss_pred EEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecCcc------------cCCC-c
Q 019218 10 VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE------------ISLG-G 76 (344)
Q Consensus 10 ~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g~~------------~~~~-~ 76 (344)
++++||..|-|+ |.+.+. .|+++++++++ +|++++|+..++ ..+.+.+.. .+.. +
T Consensus 6 ~~~~APgki~L~---geh~~~---~G~~~l~~ai~---~~~~v~v~~~~~---~~i~i~~~~~~~~~~~~~~~~~~~~~~ 73 (317)
T 1kkh_A 6 MIIETPSKVILF---GEHAVV---YGYRAISMAID---LTSTIEIKETQE---DEIILNLNDLNKSLGLNLNEIKNINPN 73 (317)
T ss_dssp EEEEEEEEEEEE---CTTGGG---GTCCEEEEEEE---EEEEEEEEECCS---SEEEEEETTTTEEEEEETTTGGGCCGG
T ss_pred EEEEccEEEEEE---cCCeeE---cCCEEEEEEec---CeEEEEEEECCC---CeEEEEeCCCCCceEEEeccCCccCcc
Confidence 445566665553 333222 36889999999 999999987542 234443211 1111 1
Q ss_pred c--hHHHHHHHHHHH---ccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHH
Q 019218 77 G--RYQNCLKEIRSR---ACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQS 151 (344)
Q Consensus 77 ~--~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~ 151 (344)
+ .+..+++.++.. ++.. ...+++|+++++||.++|||||||.++|++.|++++++.+++.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~--------------~~~g~~i~i~~~iP~~~GLGsSsa~~~a~~~al~~l~~~~l~~~ 139 (317)
T 1kkh_A 74 NFGDFKYCLCAIKNTLDYLNIE--------------PKTGFKINISSKIPISCGLGSSASITIGTIKAVSGFYNKELKDD 139 (317)
T ss_dssp GSGGGHHHHHHHHHHHHHTTCC--------------CCSCEEEEEEECSCSSSSSCHHHHHHHHHHHHHHHTTTCCCCHH
T ss_pred cchHHHHHHHHHHHHHHhhccc--------------CCCCeEEEEecCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 2 255565555442 2210 02578999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcc--------C-ccccccccCEEEEecccCCCCCCceEEEcCCCCCCCC-----ceEEEEEECCCCcccCch
Q 019218 152 QLSAIARQGS--------G-SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWND-----LVIIIAVVSSRQKETSST 217 (344)
Q Consensus 152 el~~lA~~~~--------G-s~a~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~-----l~~~vlv~~~~~~~~~s~ 217 (344)
+|+++|.++| | ++++|++||++++ .+. . ..+++. +||+ ++++++. |. .+.+|.
T Consensus 140 ~l~~~a~~~E~~~~g~~sg~D~~~~~~Gg~~~~-~~~----~---~~~~~~--~~~~~l~~~~~~vl~~-~~--~~~~T~ 206 (317)
T 1kkh_A 140 EIAKLGYMVEKEIQGKASITDTSTITYKGILEI-KNN----K---FRKIKG--EFEEFLKNCKFLIVYA-EK--RKKKTA 206 (317)
T ss_dssp HHHHHHHHHHHHHSSSCCSHHHHHHHHCSEEEE-SSS----C---EEEECH--HHHHHHHTCCEEEEEE-EC--CCSCHH
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHhCCeEEE-cCC----C---ceEecC--CcccccccCcEEEEEE-CC--CcCcHH
Confidence 9999998875 4 5688999999876 321 1 344431 1221 2444444 33 234444
Q ss_pred hhhhhhhhhchhHHHHHhhhhHHHHHHHHHHHHhCCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHH
Q 019218 218 TGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWN 297 (344)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~ 297 (344)
+.++ .++.....++.+. .....+..++..+|++.|+++|++++..++++. ...|.+.++++.+++
T Consensus 207 ~~~~-~~~~~~~~~~~~~----~~~~~~~~a~~~~d~~~l~~~~~~~~~~~~~~~--------~~~p~l~~~~~~~~~-- 271 (317)
T 1kkh_A 207 ELVN-EVAKIENKDEIFK----EIDKVIDEALKIKNKEDFGKLMTKNHELLKKLN--------ISTPKLDRIVDIGNR-- 271 (317)
T ss_dssp HHHH-HHHTCTTHHHHHH----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTTT--------CCCHHHHHHHHHHHH--
T ss_pred HHHH-HHHHhhccHHHHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHh--
Confidence 4433 3332111122222 223456788999999999999876655555422 246677777777654
Q ss_pred hhcCCceEEEEecCCC--CcEEEeecCCc-hHHHHHHH
Q 019218 298 RSVGSPQVCSFFAALS--GRCYEFCDLKH-IFVLSILS 332 (344)
Q Consensus 298 ~~~g~~~~~~~sgAGp--t~~~~~~~~~~-~~~~~~l~ 332 (344)
.| + ++.+||||| +++ .+++++. +++.+.|+
T Consensus 272 --~G-~-ga~~sGaG~GG~v~-~l~~~~~~~~~~~~l~ 304 (317)
T 1kkh_A 272 --FG-F-GAKLTGAGGGGCVI-ILVNEEKEKELLKELN 304 (317)
T ss_dssp --HS-S-EEEECSSSSSEEEE-EECCGGGHHHHHHHHH
T ss_pred --cC-c-eeEEeecCCCCEEE-EEechhhHHHHHHHHH
Confidence 57 6 666779999 544 4554332 34444444
No 21
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Probab=99.92 E-value=2.6e-23 Score=202.98 Aligned_cols=274 Identities=12% Similarity=0.089 Sum_probs=172.5
Q ss_pred EEEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecCcc----------cC-----
Q 019218 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE----------IS----- 73 (344)
Q Consensus 9 ~~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g~~----------~~----- 73 (344)
+++++||..|.|+ |.+.| |+ +..+++++++ +|++++++..++ +..++...+.. .+
T Consensus 36 ~~~~~APgkv~L~---Geh~D-y~--~~~~l~~ai~---~~~~v~v~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 105 (399)
T 1wuu_A 36 ELAVSAPGRVNLI---GEHTD-YN--QGLVLPMALE---LMTVLVGSPRKD-GLVSLLTTSEGADEPQRLQFPLPTAQRS 105 (399)
T ss_dssp SEEEEEEEEEEEE---CTTCG-GG--TCEEEEEEEE---EEEEEEEEEETT-CEEEEEECCSSSCSCSEEEEECCCSSCC
T ss_pred CEEEEeeeeEEEe---ccccc-cC--CCEEEeEEec---ccEEEEEEECCC-CeEEEEECCCCCccccceEEecCccccc
Confidence 4778999999996 88777 76 3459999999 999999987542 12233332211 11
Q ss_pred --C----CcchHHHHHHHHHHHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCC
Q 019218 74 --L----GGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLK 147 (344)
Q Consensus 74 --~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ 147 (344)
. ..+.+..+++.+ . +. +..+++|+++++||.++|||||||+++|++.|++++++.+
T Consensus 106 ~~~~~~~~~n~v~~a~~~l-~--~~---------------~~~g~~i~i~s~IP~gaGLGSSaA~~vA~~~al~~l~~~~ 167 (399)
T 1wuu_A 106 LEPGTPRWANYVKGVIQYY-P--AA---------------PLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDS 167 (399)
T ss_dssp CCCCSSGGGHHHHHHHHHC-S--SS---------------CCCEEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHSCCC
T ss_pred cccCCCCHHHHHHHHHHHh-c--CC---------------CCCCeEEEEECCCCCCCCccHHHHHHHHHHHHHHHHhCCC
Confidence 0 013344444333 1 11 1247899999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcc--------C--ccccccccCE---EEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCccc
Q 019218 148 ENQSQLSAIARQGS--------G--SACRSLFGGF---VKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKET 214 (344)
Q Consensus 148 ls~~el~~lA~~~~--------G--s~a~s~~GG~---v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~ 214 (344)
++.++|+++|.++| | +.++|++||+ +.++.. + ....+++. +.++++++++.+... .
T Consensus 168 l~~~~l~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~~~~-~-----~~~~~~~~--~~~~~~~vl~~~~~~---~ 236 (399)
T 1wuu_A 168 GTIAARAQVCQQAEHSFAGMPCGIMDQFISLMGQKGHALLIDCR-S-----LETSLVPL--SDPKLAVLITNSNVR---H 236 (399)
T ss_dssp SCHHHHHHHHHHHHHHHTCCCCCSHHHHHHHHCCTTEEEEEETT-T-----CCEEEEEC--CCSSEEEEEEEEEEE---C
T ss_pred CCHHHHHHHHHHHHHHhcCCCCccHHHHHHHhccCCeEEEEecC-C-----CceEEecC--CCCCeEEEEEECCCc---c
Confidence 99999999998763 3 4467899993 444422 1 12445542 124666666544322 2
Q ss_pred Cchh-hh----------hhhhh-----h-------------ch-h---HHHHHhhhhHHHHHHHHHHHHhCCHHHHHHHH
Q 019218 215 SSTT-GM----------RESVE-----T-------------SL-L---LQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLT 261 (344)
Q Consensus 215 ~s~~-~~----------~~~~~-----~-------------~~-~---~~~~~~~~~~~~~~~l~~al~~~D~~~l~~~~ 261 (344)
++.. ++ ++.+. . .+ . ....+.+ ..++..++.+|.++|++.|+++|
T Consensus 237 ~t~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~l~~~~~~r~~~~~~e--~~r~~~~~~al~~~d~~~lg~~m 314 (399)
T 1wuu_A 237 SLASSEYPVRRRQCEEVARALGKESLREVQLEELEAARDLVSKEGFRRARHVVGE--IRRTAQAAAALRRGDYRAFGRLM 314 (399)
T ss_dssp --CTTTHHHHHHHHHHHHHHTTCSSTTSCCHHHHTTGGGGSCHHHHHHHHHHHHH--HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHhChhhhhcCCHHHHHHHHhhcCHHHHHHHHHHHhh--HHHHHHHHHHHHcCCHHHHHHHH
Confidence 2211 11 11110 0 00 0 0112222 33578899999999999999999
Q ss_pred HHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCC--CCcEEEeecCCc-hHHHHHHHHHh
Q 019218 262 CADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAAL--SGRCYEFCDLKH-IFVLSILSASA 335 (344)
Q Consensus 262 ~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAG--pt~~~~~~~~~~-~~~~~~l~~~~ 335 (344)
+++++.|+..+. ...|.+.++++.+++ ..|++ ++.+|||| |+++ .+++++. +++.+.|++.+
T Consensus 315 ~~~h~~l~~~~~-------~~~p~l~~l~~~a~~---~~Ga~-ga~~sGaG~Gg~v~-~l~~~~~~~~~~~~l~~~~ 379 (399)
T 1wuu_A 315 VESHRSLRDDYE-------VSCPELDQLVEAALA---VPGVY-GSRMTGGGFGGCTV-TLLEASAAPHAMRHIQEHY 379 (399)
T ss_dssp HHHHHHHHHTSC-------CCCHHHHHHHHHHHT---STTEE-EEEECSSCSEEEEE-EEEEGGGHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc-------CCCHHHHHHHHHHHh---cCCce-EEeeecCCCccEEE-EEEccchHHHHHHHHHHHh
Confidence 887766664332 245666666666543 14876 66667999 7766 4555443 66777776654
No 22
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A
Probab=99.92 E-value=9e-23 Score=193.45 Aligned_cols=285 Identities=13% Similarity=0.074 Sum_probs=186.0
Q ss_pred EEEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecCcc--cCC----CcchHHHH
Q 019218 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE--ISL----GGGRYQNC 82 (344)
Q Consensus 9 ~~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g~~--~~~----~~~~~~~~ 82 (344)
|++++||-.+=| .|.+...|. |.++|.+|++ +|++++|+.++ ..++..+..+ ... ..+.+..+
T Consensus 1 mi~v~apGKviL---~GEhaVv~~--G~~Ala~ai~---~~~~v~i~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~ 69 (335)
T 3gon_A 1 MIAVKTCGKLYW---AGEYAILEP--GQLALIKDIP---IYMRAEIAFSD---SYRIYSDMFDFAVDLRPNPDYSLIQET 69 (335)
T ss_dssp CEEEEEEEEEEE---ECTTGGGST--TCEEEEEEEE---EEEEEEEEECS---SCEEEETTSSSCBCSSCCTTTHHHHHH
T ss_pred CEEEEECCEEEE---EeeeeEEcC--CCcEEEEEec---ceEEEEEEECC---CCEEEEeCCCcccccCcCCCcHHHHHH
Confidence 578899988877 587766553 7899999999 89999998764 3455543221 111 12344555
Q ss_pred HHHHHHHccccccccccccccccccccccEEEEEeeCCCCc---ccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHh
Q 019218 83 LKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTA---AGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQ 159 (344)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~---~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~~ 159 (344)
++.+.+++... | .+..+++|++.+++|.+ +|||||||.++|++.|++++++++++++++.++|..
T Consensus 70 i~~~~~~l~~~-----~-------~~~~~~~i~I~s~lp~~~~~~GLgSSaa~~va~~~al~~~~~~~~~~~~l~~la~~ 137 (335)
T 3gon_A 70 IALMGDFLAVR-----G-------QNLRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSA 137 (335)
T ss_dssp HHHHHHHHHHT-----T-------CCCCCEEEEEECCSEETTEECSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHc-----C-------CCCCceEEEEEecCCcccCCCCcchHHHHHHHHHHhhhhcccccchHHHHHHHHHH
Confidence 55555444321 1 11356888889999987 599999999999999999999999999999999976
Q ss_pred cc------C---ccccccccCEEEEecccCC----------------CCCCceEEEcCCCCCCCCceEEEEEECCCCccc
Q 019218 160 GS------G---SACRSLFGGFVKWILGKEG----------------NGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKET 214 (344)
Q Consensus 160 ~~------G---s~a~s~~GG~v~~~~~~~~----------------~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~ 214 (344)
.| | +.++|.|||++.+...... ........+++.+ +++++++..+.. ..
T Consensus 138 ~E~~~~g~~sg~D~a~a~~Gg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~---~~ 211 (335)
T 3gon_A 138 VLLKRGDNGSMGDLACIAAEDLVLYQSFDRQKVAAWLEEENLATVLERDWGFSISQVKPT---LECDFLVGWTKE---VA 211 (335)
T ss_dssp HHHHTTCCSCSHHHHHHHHTSCEEEECCCHHHHHHHHHHSCHHHHHHSCCCCEEEECCCC---SCCEEEEEECCC---CC
T ss_pred HHHHhcCCCCCCCcceeecCCeEEEEeCCccccceeecccchhheecccccceeEEcCCc---cccceEEeecCC---hh
Confidence 54 3 3478999999876532100 0001123444321 345555444322 23
Q ss_pred CchhhhhhhhhhchhHHHHHhhhhHHHHHHHHHHHHhCCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHH
Q 019218 215 SSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVE 294 (344)
Q Consensus 215 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~ 294 (344)
+|.+.... ++... .+..+.+ ...++..++.+|.++|++.|+++|+.+|..|+++++. ..+|.+.++++.++
T Consensus 212 ~t~~~v~~-v~~~~-~~~~~~~-~~~~~~~~~~aL~~~d~~~lg~lm~~~h~~l~~l~~~------is~p~ld~l~~~a~ 282 (335)
T 3gon_A 212 VSSHMVQQ-IKQNI-NQNFLTS-SKETVVSLVEALEQGKSEKIIEQVEVASKLLEGLSTD------IYTPLLRQLKEASQ 282 (335)
T ss_dssp CHHHHHHH-HGGGC-CHHHHHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCTT------TCCHHHHHHHHTTT
T ss_pred hHHHHHHH-HHHHh-HHHHHHH-HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCCc------CCCHHHHHHHHHHH
Confidence 34443332 22211 1222322 3677899999999999999999999999999987653 35677777777755
Q ss_pred HHHhhcCCceEEEEecCCCCcEE-EeecCCchHHHHHHHHHhhhCC
Q 019218 295 RWNRSVGSPQVCSFFAALSGRCY-EFCDLKHIFVLSILSASARENS 339 (344)
Q Consensus 295 ~~~~~~g~~~~~~~sgAGpt~~~-~~~~~~~~~~~~~l~~~~~~~~ 339 (344)
+ .|+ ++++| |||.+.|+ ++++ +++..+.+++.+++.+
T Consensus 283 ~----~g~-~aklt-GAG~Ggc~ial~~--~~~~~~~i~~~~~~~G 320 (335)
T 3gon_A 283 D----LQA-VAKSS-GAGGGDCGIALSF--DAQSTKTLKNRWADLG 320 (335)
T ss_dssp T----SSE-EEEEC-TTCSSSEEEEEEC--SHHHHHHHHHHHHHTT
T ss_pred h----CCc-EEEEc-cccchheEEEEEC--CHHHHHHHHHHHHHCC
Confidence 4 565 46655 99998874 3554 3344455555555544
No 23
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}
Probab=99.91 E-value=1.8e-22 Score=194.99 Aligned_cols=290 Identities=12% Similarity=0.095 Sum_probs=185.9
Q ss_pred EEEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecCcc----------cCCC---
Q 019218 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE----------ISLG--- 75 (344)
Q Consensus 9 ~~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g~~----------~~~~--- 75 (344)
+++++||--+-|+ |.+-+-+ |++++|.+|++ +|++++|+..++ .++...+.+ ....
T Consensus 6 ~i~~~APGrv~L~---GEh~~~~--~g~~~l~~Ai~---~~~~v~v~~~~~---~~i~s~~~~~~~~~~~~~~~~~~~~~ 74 (365)
T 3k17_A 6 KLQVKIPGKLYVA---GEYAVVE--SGHTAILTAVN---RYITLTLEDSER---NELWIPHYENPVSWPIGGELKPDGEH 74 (365)
T ss_dssp CEEEEEEEEEEEE---CTTGGGS--TTCEEEEEEEE---EEEEEEEEECSS---CEEECTTCSSCBCCCTTSCCCCSCGG
T ss_pred EEEEEecceEEEe---cccEEec--CCCEEEEEEcc---CcEEEEEEECCC---cEEEecCCCcceeeecccCCCCCCCh
Confidence 5789999999885 6555432 57899999999 899998887642 234432211 0000
Q ss_pred cchHHHHHHHHHHHccccccccccccccccccccccEEEEEeeCCCC----cccccchhhhHHHHHHHHHHHhCCCCCHH
Q 019218 76 GGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPT----AAGLASSAAGFACLVFSLAKLMNLKENQS 151 (344)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~----~~GLGSSaA~~vA~i~Al~~l~~~~ls~~ 151 (344)
.+.+..+++.+.+++... | .+..+++|+++++||. ++|||||||.++|++.|++++++++++.+
T Consensus 75 ~~yv~~~i~~~~~~~~~~-----g-------~~~~g~~i~i~s~iP~~~g~~~GLgSSaa~~va~~~al~~~~~~~l~~~ 142 (365)
T 3k17_A 75 WTFTAEAINIATTFLKSE-----G-------IELTPVKMVIETELIDQSGAKYGLGSSAAATVAVINALMTKFYPEISML 142 (365)
T ss_dssp GHHHHHHHHHHHHHHHHT-----T-------CCCCCEEEEEEESSBCTTSCBCSSCHHHHHHHHHHHHHHHHHCTTSCHH
T ss_pred HHHHHHHHHHHHHHHHhc-----C-------CCCCCEEEEEEcCCCCCCCCCCcccHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 134556666665544221 1 1135789999999996 67999999999999999999999999999
Q ss_pred HHHHHHHhcc------C---ccccccccCEEEEecccC------CC----------CC-CceEEEcCCCCCCCCceEEEE
Q 019218 152 QLSAIARQGS------G---SACRSLFGGFVKWILGKE------GN----------GS-DSLAVQLVDEEHWNDLVIIIA 205 (344)
Q Consensus 152 el~~lA~~~~------G---s~a~s~~GG~v~~~~~~~------~~----------~~-~~~~~~l~~~~~~~~l~~~vl 205 (344)
+|.++|.+.| + +.++|+|||++.+..... .. .+ .....+++.+ ++ +++++
T Consensus 143 ~l~~~a~~~E~~~~g~~~g~D~~~~~~Gg~~~~~~~~~~~~~~~~~~~~l~~l~~~~w~~~~~~~l~~~---~~-~lll~ 218 (365)
T 3k17_A 143 KKFKLAALSHLVVQGNGSCGDIASCMYGGWIAYTTFDQEWVKHRLAYKSLEWFMKEPWPMLQIETLEEP---VP-TFSVG 218 (365)
T ss_dssp HHHHHHHHHHHHHHSSCCSHHHHHHHHCSEEEEECCCHHHHHHHHTTSCHHHHHHSCCTTCEEEEECCC---SS-EEEEE
T ss_pred HHHHHHHHHHHHhCCCCCcccHHHHhcCCEEEEecCCHHHhhhhcccchhhhhhccCCCCcceeeccCC---cc-cEEEE
Confidence 9999997543 2 358899999988753210 00 00 1124555421 34 54444
Q ss_pred EECCCCcccCchhhhhhhhhh----ch-hHHHHHhhhhHHHHHHHHHHHHhCCHHHHHHHHHHhhhHHhhhhccCCCCee
Q 019218 206 VVSSRQKETSSTTGMRESVET----SL-LLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIF 280 (344)
Q Consensus 206 v~~~~~~~~~s~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~l~~al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~ 280 (344)
.+. .+.+|.+.+.. ++. .+ .+++.+.+ ...++..++.+|.++|++.|+++|..++..|+++.. .+++.
T Consensus 219 ~t~---~~~sT~~~~~~-v~~~~~~~~~~~~~~~~~-~~~~~~~~~~aL~~gd~~~lg~lm~~~~~~l~~l~v--~~~~~ 291 (365)
T 3k17_A 219 WTG---TPVSTGKLVSQ-IHAFKQEDSKNYQHFLTR-NNEIMKQIIQAFHTKDEELLYSSIKENRRILQELGT--KAGVN 291 (365)
T ss_dssp ECS---CCCCHHHHHHH-HHHHHHHCHHHHHHHHHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH--HHTCC
T ss_pred ECC---CccchHHHHHH-HHHHHHhChHHHHHHHHH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhh--hcCCc
Confidence 332 23444444333 221 11 13344443 245678999999999999999999999899988665 23445
Q ss_pred eecccHHHHHHHHHHHHhhcCCceEEEEecCCCCcEE-EeecCCchHHHHHHHHHhhhCCc
Q 019218 281 YMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRCY-EFCDLKHIFVLSILSASARENSY 340 (344)
Q Consensus 281 ~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGpt~~~-~~~~~~~~~~~~~l~~~~~~~~~ 340 (344)
+..|.+.++++.+++ .|+. ++. +|||.+.|+ ++++++ ...+.+.+..++.++
T Consensus 292 is~p~ld~l~~~a~~----~Ga~-ak~-sGAGgGg~vial~~~~--~~~~~l~~~l~~~g~ 344 (365)
T 3k17_A 292 IETSLLKELADSAEN----MGGA-GKS-SGSGGGDCGIAFSKTK--ELAEKLVNEWEKLGI 344 (365)
T ss_dssp CSCHHHHHHHHHHHH----TTSE-EEE-CTTCSSSEEEEEESSH--HHHHHHHHHHHHTTC
T ss_pred ccCHHHHHHHHHHHh----cCCE-EEe-cCCCCCCEEEEEECCH--HHHHHHHHHHHHCCC
Confidence 577888888888765 6775 554 599965552 455432 233344444444443
No 24
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=1.7e-23 Score=201.62 Aligned_cols=283 Identities=13% Similarity=0.153 Sum_probs=162.7
Q ss_pred eEEEEEecceeEeeeecccccCCC-----CCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecCc----cc------
Q 019218 8 LMVTAQTPTNIAVIKYWGKRDETL-----ILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGK----EI------ 72 (344)
Q Consensus 8 ~~~~~~a~~nial~ky~Gk~d~~~-----~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g~----~~------ 72 (344)
|+++++||.-|-|+ |.+-|-+ + .++ +|.+|++ +|++++++..++ +..++.-++. ..
T Consensus 2 Mmi~~~APgRvnL~---GehtD~~~~~~~~-gG~-vl~~AId---~~~~v~i~~~~d-~~i~i~s~~~~~~~~~~~~~~~ 72 (357)
T 3k85_A 2 SLVRSKAPLRLGLA---GGGSDVSPYSDIY-GGL-ILNATIN---LYAYCTIEETNS-GRIEINAYDAQCCKSYLSMSQL 72 (357)
T ss_dssp -CEEEEEEEEEEEE---CTTTTSTTHHHHT-CEE-EEEEEEE---EEEEEEEEECSS-SEEEEEETTTTEEEEEECCSSC
T ss_pred cEEEEECceEEEEe---cCCccCcchhhcC-CCE-EEEEEEe---CcEEEEEEECCC-CeEEEEECCCCceEEEeccccc
Confidence 57899999999996 6555441 2 233 9999999 999999987642 1222322211 01
Q ss_pred --CCCcchHHHHHHHHHHHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCH
Q 019218 73 --SLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQ 150 (344)
Q Consensus 73 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~ 150 (344)
....+.+..+++.+++..+. ...+++|+++++||.++|||||||.++|++.|++++++.+++.
T Consensus 73 ~~~~~~~~v~~~~~~l~~~~~~---------------~~~g~~i~i~~~iP~g~GLgSSaa~~va~~~al~~~~~~~l~~ 137 (357)
T 3k85_A 73 EIDGEASLIKGVYNRIIRDYRL---------------EPKSFKITTYNDAPAGSGLGTSSTMVVCILKAFIEWLSLPLGD 137 (357)
T ss_dssp CCCSSSHHHHHHHHHHHHHTTC---------------CCCCEEEEEEESSCSSSSSCHHHHHHHHHHHHHHHHHTCCCCH
T ss_pred cccchHHHHHHHHHHHHHhcCC---------------CCCCEEEEEecCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCH
Confidence 11246677788877765431 1357999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcc--------C--ccccccccCEEEEecccCCCCCCceEEEcCCCCCCC----CceEEEEEECCCCcccCc
Q 019218 151 SQLSAIARQGS--------G--SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWN----DLVIIIAVVSSRQKETSS 216 (344)
Q Consensus 151 ~el~~lA~~~~--------G--s~a~s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~----~l~~~vlv~~~~~~~~~s 216 (344)
++|+++|.++| | +.+.|+|||++.+.... +......+++.+ ++. ++.+++ .... .+.++
T Consensus 138 ~~l~~~a~~~E~~~~G~~~G~~D~~a~~~Gg~~~~~~~~---~~~~~~~~l~~~-~~~~~~l~~~lvi--~~t~-~~~~a 210 (357)
T 3k85_A 138 YETSRLAYEIERKDLGLSGGKQDQYAAAFGGFNYMEFLQ---NDLVIVNPLKMK-RWIVDELESSMVL--YFTG-RSRSS 210 (357)
T ss_dssp HHHHHHHHHHHHTTTCCCCCSHHHHHHHHCSEEEEEEET---TTEEEEEEECCC-HHHHHHHHHTEEE--ECC-------
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHhCCceEEEEeC---CCceeEEEEecC-hhhhhhcCceEEE--EECC-CcccH
Confidence 99999998876 4 33567899998643211 111224555421 110 123333 3333 33445
Q ss_pred hhhhhhhhhhch----hHHHHHhhhhHHHHHHHHHHHHhCCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHH
Q 019218 217 TTGMRESVETSL----LLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISY 292 (344)
Q Consensus 217 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~ 292 (344)
++.++..++... .+...+.+ ...++..++.||.++|++.|+++|.+++ |++.... ...-.|.+.++++.
T Consensus 211 ~~~l~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~aL~~~d~~~lg~lm~~~~---~~l~~~~---~~vs~p~ld~l~~~ 283 (357)
T 3k85_A 211 AAIINEQKKNTSEGNQTAIEAMHK-IKQSAIDTKLALLKGDVGEFARILGEGW---ENKKKMA---GAITNPMIQEAFDV 283 (357)
T ss_dssp ---------------CCTTHHHHH-HHHHHHHHHHHHTTTCHHHHHHHHHHHH---HHTTC--------------CCSCT
T ss_pred HHHHHHHHHHhhcCcHHHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHH---HHHHhcC---CCCCCHHHHHHHHH
Confidence 554443322111 01112332 2357788999999999999999987643 3322210 01123666666666
Q ss_pred HHHHHhhcCCceEEEEecCCCCcEE-EeecCCc-hHHHHHHHH
Q 019218 293 VERWNRSVGSPQVCSFFAALSGRCY-EFCDLKH-IFVLSILSA 333 (344)
Q Consensus 293 v~~~~~~~g~~~~~~~sgAGpt~~~-~~~~~~~-~~~~~~l~~ 333 (344)
+++ .|++ ++.++||||++|+ ++++++. +++.+.|++
T Consensus 284 a~~----~Ga~-GaklsGaG~gG~vial~~~~~~~~~~~~l~~ 321 (357)
T 3k85_A 284 ATG----AGAM-AGKVSGAGGGGFIMFVVEPTRKEEVVRALNN 321 (357)
T ss_dssp TTT----SCCS-EEEECCCC---CEEEECCHHHHHHHHHHHHT
T ss_pred HHh----cCCe-EeEecccCCCCEEEEEecHHHHHHHHHHHHH
Confidence 543 6888 5556699999763 3454332 445555554
No 25
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Probab=99.90 E-value=7.6e-22 Score=197.00 Aligned_cols=281 Identities=12% Similarity=0.114 Sum_probs=176.4
Q ss_pred EEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecCc----------ccC--CC-c
Q 019218 10 VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGK----------EIS--LG-G 76 (344)
Q Consensus 10 ~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g~----------~~~--~~-~ 76 (344)
+.++||..+.|+ |.+.+. |++++|++|++ +|++++|+..++ +..++...+. ... .. .
T Consensus 56 ~~~~APgrv~L~---Geh~D~---~g~~vl~~AI~---~~~~v~v~~~~~-~~i~i~~~~~~~~~~~~~~~~l~~~~~~~ 125 (478)
T 2a2c_A 56 FYVRAPGRVNII---GEHIDY---CGYSVLPMAVE---QDVLIAVEPVKT-YALQLANTNPLYPDFSTSANNIQIDKTKP 125 (478)
T ss_dssp EEEEEEEEEEEE---CTTCGG---GTCCBEEEEEE---EEEEEEEEECSS-SCEEEEESSTTSCCEEECCCCC--CCSSC
T ss_pred EEEEeceEEEEe---ccceee---CCCeEEEEEec---ccEEEEEEECCC-CeEEEEECCCCCcceeccchhcccCCCcc
Confidence 678999999885 877663 46899999999 999999987542 1233332221 000 11 1
Q ss_pred ---chHHHHHHHHHHHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHH
Q 019218 77 ---GRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQL 153 (344)
Q Consensus 77 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el 153 (344)
+.+..+++.+.+.++.. ...+++|.++++||.++|||||||+++|++.|++.+++.++++++|
T Consensus 126 ~~~n~v~~a~~~v~~~~~~~--------------~~~g~~i~i~s~IP~g~GLgSSAA~~va~~~al~~~~~~~ls~~~l 191 (478)
T 2a2c_A 126 LWHNYFLCGLKGIQEHFGLS--------------NLTGMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGRNLSKVEL 191 (478)
T ss_dssp CHHHHHHHHHHHHHHHTTCC--------------SCCCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHHTCCCCHHHH
T ss_pred cHHHHHHHHHHHHHHHHhcc--------------CCCceEEEEECCCCCCCCchHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 33444456666555430 0357899999999999999999999999999999999999999999
Q ss_pred HHHHHhccC---------cccccccc---CEEEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCch----
Q 019218 154 SAIARQGSG---------SACRSLFG---GFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSST---- 217 (344)
Q Consensus 154 ~~lA~~~~G---------s~a~s~~G---G~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~---- 217 (344)
+++|.++|. +.+.|++| |++..+..+ ....+++.+ +++.++++.+.....+..+.
T Consensus 192 ~~la~~~E~~~g~~~g~~D~~a~~~G~~g~~~~i~f~~------~~~~~~~~~---~~~~~vi~~s~~~~~t~~t~~yn~ 262 (478)
T 2a2c_A 192 AEICAKSERYIGTEGGGMDQSISFLAEEGTAKLIEFSP------LRATDVKLP---SGAVFVIANSCVEMNKAATSHFNI 262 (478)
T ss_dssp HHHHHHHHGGGTCCCCSHHHHHHHHCBTTBEEEEETTT------TEEEEECCC---TTEEEEEEECCCCCCGGGSSHHHH
T ss_pred HHHHHHHHhhcCCCCccHHHHHHHhccCCcEEEEEcCC------CceEEecCC---CCcEEEEEeCCCcccccccchhHH
Confidence 999988863 22457887 776554321 224555421 35555444322211111110
Q ss_pred -----hhhhhhhhhc--------------------------------------h--------------------------
Q 019218 218 -----TGMRESVETS--------------------------------------L-------------------------- 228 (344)
Q Consensus 218 -----~~~~~~~~~~--------------------------------------~-------------------------- 228 (344)
+..++++++. .
T Consensus 263 r~~e~~~A~~~L~~~~~~~~~~~~~l~d~~~~~~~~~~~~v~~v~~~~~~~~~~~~~i~~~l~~~~~~~~~~~l~~~~~~ 342 (478)
T 2a2c_A 263 RVMECRLAAKLLAKYKSLQWDKVLRLEEVQAKLGISLEEMLLVTEDALHPEPYNPEEICRCLGISLEELRTQILSPNTQD 342 (478)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTCCCHHHHHHHHTCCHHHHHHHHHHHSCSSCBCHHHHHHHHTCCHHHHHHHTSCGGGTT
T ss_pred HHHHHHHHHHHHHhhhcccccccchHHhhhhhhcccHHHHHHHHHHhcccccccHHHHHHHhCccHHHHHhhcccccccc
Confidence 0111111110 0
Q ss_pred -----hHH---HHHhhhhHHHHHHHHHHHHh---CCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHH
Q 019218 229 -----LLQ---HRAKEVVPKRIVQMEEAIQN---HDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWN 297 (344)
Q Consensus 229 -----~~~---~~~~~~~~~~~~~l~~al~~---~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~ 297 (344)
.++ ..+.+ ..++..++.+|.+ +|++.|+++|+.++..+..++ ....|.+.++++.+++
T Consensus 343 ~~~~~~~~ra~h~~~e--~~rv~~~~~aL~~~~~~d~~~lg~lm~~sh~slr~l~-------~vs~peld~l~~~a~~-- 411 (478)
T 2a2c_A 343 VLIFKLYQRAKHVYSE--AARVLQFKKICEEAPENMVQLLGELMNQSHMSCRDMY-------ECSCPELDQLVDICRK-- 411 (478)
T ss_dssp CCCBCHHHHHHHHHHH--HHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHTS-------CCCCHHHHHHHHHHHH--
T ss_pred chhHHHHHHHHHHHHH--HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcc-------cCCCHHHHHHHHHHHh--
Confidence 000 12222 4567888999999 999999999976655444332 1246777777777654
Q ss_pred hhcCCceEEEEecCCCCcEE-EeecCCc-hHHHHHHHHHhhh
Q 019218 298 RSVGSPQVCSFFAALSGRCY-EFCDLKH-IFVLSILSASARE 337 (344)
Q Consensus 298 ~~~g~~~~~~~sgAGpt~~~-~~~~~~~-~~~~~~l~~~~~~ 337 (344)
.|++++ -++|||.++|+ .+++++. +.+.+.|++.+.+
T Consensus 412 --~Ga~Ga-rltGAG~GG~viaLv~~~~~~~~~~~l~~~y~~ 450 (478)
T 2a2c_A 412 --FGAQGS-RLTGAGWGGCTVSMVPADKLPSFLANVHKAYYQ 450 (478)
T ss_dssp --TTCSEE-EECTTCSSSEEEEEEEGGGHHHHHHHHHHHHHC
T ss_pred --CCCcEE-EeccCCCccEEEEEEcHHHHHHHHHHHHHHHHH
Confidence 688844 45599865553 4555543 6688888776554
No 26
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A
Probab=99.89 E-value=3.4e-21 Score=187.72 Aligned_cols=277 Identities=14% Similarity=0.128 Sum_probs=166.3
Q ss_pred EEEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecCcc---------cC------
Q 019218 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE---------IS------ 73 (344)
Q Consensus 9 ~~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g~~---------~~------ 73 (344)
+++++||.-+.|+ |.|-+ |+ +.++|++|++ +|++++|+..++ +..++...+.. ..
T Consensus 5 ~~~~~APgrv~L~---Geh~d-~~--g~~~l~~ai~---~~~~v~v~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 74 (395)
T 1kvk_A 5 VLLVSAPGKVILH---GEHAV-VH--GKVALAVALN---LRTFLVLRPQSN-GKVSLNLPNVGIKQVWDVATLQLLDTGF 74 (395)
T ss_dssp CEEEEEEEEEEEE---CTTGG-GG--TCCEEEEEEE---EEEEEEEEECSS-SEEEEEETTTTEEEEEEHHHHHTSCC--
T ss_pred cEEEEeCeEEEEe---cCCee-eE--CCEeeeeEee---ccEEEEEEECCC-CeEEEEcCCCCceEEEEhHhhhhhhccc
Confidence 4779999999995 88777 44 5889999999 999999987642 12222222110 00
Q ss_pred ------------------------CCcch-----HHHHHHHHHHHccccccccccccccccccccccEEEEEeeCCCCcc
Q 019218 74 ------------------------LGGGR-----YQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAA 124 (344)
Q Consensus 74 ------------------------~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~ 124 (344)
...+. +..+++.+++..+.. ....+++|+++++||.++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~-------------~~~~g~~i~i~s~iP~g~ 141 (395)
T 1kvk_A 75 LEQGDVPAPTLEQLEKLKKVAGLPRDCVGNEGLSLLAFLYLYLAICRKQ-------------RTLPSLDIMVWSELPPGA 141 (395)
T ss_dssp --------------CHHHHHHTSSCCCSCTTHHHHHHHHHHHHHHHTTS-------------SSCCCEEEEEEESSCTTS
T ss_pred ccccccccccHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHhccc-------------cCCCCEEEEEEecCCCCC
Confidence 00011 222333333322210 002478999999999999
Q ss_pred cccchhhhHHHHHHHHHHHhCC-----CCC-------HHH---HHHHHHhcc----C-----ccccccccCEEEEecccC
Q 019218 125 GLASSAAGFACLVFSLAKLMNL-----KEN-------QSQ---LSAIARQGS----G-----SACRSLFGGFVKWILGKE 180 (344)
Q Consensus 125 GLGSSaA~~vA~i~Al~~l~~~-----~ls-------~~e---l~~lA~~~~----G-----s~a~s~~GG~v~~~~~~~ 180 (344)
|||||||.++|++.|++++++. +++ .++ |.++|.++| | +.+.|++||++++..+
T Consensus 142 GLGSSaA~~va~~~al~~l~~~~~~~~~l~~~~~~~~~~~l~~l~~~A~~~E~~~~G~~sG~D~~~~~~Gg~~~~~~~-- 219 (395)
T 1kvk_A 142 GLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIGSWPEEDLKSINKWAYEGERVIHGNPSGVDNSVSTWGGALRYQQG-- 219 (395)
T ss_dssp SSCHHHHHHHHHHHHHHHHTTSSCCGGGGCCSEECCCHHHHHHHHHHHHHHHHHHHSSCCSHHHHHHHHCSEEEESSS--
T ss_pred CccHHHHHHHHHHHHHHHHhCcccccccccccccccchhhHHHHHHHHHHhhheEecCCCCcchHHhhhcceEEEcCC--
Confidence 9999999999999999999999 888 754 444454444 3 3456899999886322
Q ss_pred CCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCchhhhhhhhh---hch-hHHHHHhhhhHHHHHHHHH-------HH
Q 019218 181 GNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVE---TSL-LLQHRAKEVVPKRIVQMEE-------AI 249 (344)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~l~~-------al 249 (344)
...+++. .++++++++. |. .+.+|.+.+..+.. ..+ .++....+ ....+..+.. ++
T Consensus 220 ------~~~~l~~---~~~~~~vl~~-~~--~~~~T~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~al 286 (395)
T 1kvk_A 220 ------KMSSLKR---LPALQILLTN-TK--VPRSTKALVAGVRSRLIKFPEIMAPLLTS-IDAISLECERVLGEMAAAP 286 (395)
T ss_dssp ------CEEECSC---CCCEEEEEEE-CC--CCCCHHHHHHHHHHHHHHSHHHHHHHHHH-HHHHHHHHHHHHHHHTTCC
T ss_pred ------CceeccC---CCCcEEEEEE-CC--CCCchHHHHHHHHHHHHHCHHHHHHHHHH-HHHHHHHHHHHHHhhhccc
Confidence 1456642 2566655544 32 23344433221111 111 11222222 1222333333 34
Q ss_pred HhCCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCC--CCcEEEeecCC-chH
Q 019218 250 QNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAAL--SGRCYEFCDLK-HIF 326 (344)
Q Consensus 250 ~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAG--pt~~~~~~~~~-~~~ 326 (344)
.++|++.|+++|+.+++.||+... ..|.+.++++.+++ .|+ +++. +||| |+++ ++++++ .+.
T Consensus 287 ~~~d~~~lg~lm~~~~~~l~~~~~--------~~p~l~~l~~~a~~----~Ga-ga~~-sGaG~Gg~v~-~l~~~~~~~~ 351 (395)
T 1kvk_A 287 VPEQYLVLEELMDMNQHHLNALGV--------GHASLDQLCQVTAA----HGL-HSKL-TGAGGGGCGI-TLLKPGLERA 351 (395)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTC--------CCHHHHHHHHHHHH----TTC-EEEE-CSSCSSSEEE-EEECTTCCHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCC--------CCHHHHHHHHHHHH----cCC-ceee-ccCCCCCEEE-EEecCCCCHH
Confidence 458999999999999999997322 46677777777654 577 4555 5999 5555 455544 355
Q ss_pred HHHHHHHHhhhC
Q 019218 327 VLSILSASAREN 338 (344)
Q Consensus 327 ~~~~l~~~~~~~ 338 (344)
+.+.+++.+++.
T Consensus 352 ~~~~~~~~~~~~ 363 (395)
T 1kvk_A 352 KVEAAKQALTGC 363 (395)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc
Confidence 666665555543
No 27
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Probab=99.56 E-value=1.8e-12 Score=129.77 Aligned_cols=149 Identities=15% Similarity=0.187 Sum_probs=93.2
Q ss_pred EEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEc--CCCCcceEE------------e--cCc--c
Q 019218 10 VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVS--PSFDQDRMW------------L--NGK--E 71 (344)
Q Consensus 10 ~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~--~~~~~~~i~------------i--~g~--~ 71 (344)
..++||--+-|| |.+-| |+ +.-++.+|++ +++.+.|... ++ +..++. + ++. .
T Consensus 40 ~v~~APGRVnLi---GEHtD-yn--gG~VLp~AI~---~~~~vav~~~~~~d-~~i~i~S~~~~~~~~~~~l~~~~~~~~ 109 (520)
T 3v2u_C 40 FIARSPGRVNLI---GEHID-YC--DFSVLPLAID---VDMLCAVKILDEKN-PSITLTNADPKFAQRKFDLPLDGSYMA 109 (520)
T ss_dssp EEEEEEEEEEEE---CTTCG-GG--TCCBEEEEEE---EEEEEEEEECCCSS-CEEEEEESSTTSCCEEEECCTTCCCCC
T ss_pred EEEEcceeEEEe---ccCee-eC--CCEEEEEEee---cceEEEEEeccCCC-CEEEEEECCCCCCceEEEeccCccccc
Confidence 568899888885 76665 43 4669999999 8888888764 21 112221 1 110 0
Q ss_pred cCCCc----chHHHHHHHHHHHcccccc-ccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHh--
Q 019218 72 ISLGG----GRYQNCLKEIRSRACDVED-TEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLM-- 144 (344)
Q Consensus 72 ~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~-- 144 (344)
++... +.+..+++.+.+.+..... ...| .+..+++|.+.++||.++|| |||..+|++.|+++++
T Consensus 110 i~~~~~~W~~Yv~g~i~~v~~~l~~~~~~~~~g-------~~~~G~~i~i~s~vP~gsGL--SAA~~va~~~Al~~~~~g 180 (520)
T 3v2u_C 110 IDPSVSEWSNYFKCGLHVAHSYLKKIAPERFNN-------TPLVGAQIFCQSDIPTGGGL--SSAFTCAAALATIRANMG 180 (520)
T ss_dssp CCTTSCCHHHHHHHHHHHHHHHHHHHCHHHHSS-------SCCCCEEEEEEECCCTTSSH--HHHHHHHHHHHHHHHHHC
T ss_pred cCcccccHHHHHHHHHHHHHHHHHhhccccccc-------CCCCceEEEEecCCCCCCCH--HHHHHHHHHHHHHHHhhc
Confidence 11011 2222222222221111000 0000 01357899999999999999 9999999999999998
Q ss_pred -CCCCCHHHHHHHHHhccC---------ccccccccC---EEEEec
Q 019218 145 -NLKENQSQLSAIARQGSG---------SACRSLFGG---FVKWIL 177 (344)
Q Consensus 145 -~~~ls~~el~~lA~~~~G---------s~a~s~~GG---~v~~~~ 177 (344)
++++++.+|+++|.+.|- +-..|++|| +++.+.
T Consensus 181 ~~~~l~~~~la~la~~aE~~vG~~~G~mDQ~as~~G~~g~~l~id~ 226 (520)
T 3v2u_C 181 KNFDISKKDLTRITAVAEHYVGVNNGGMDQATSVYGEEDHALYVEF 226 (520)
T ss_dssp TTCCCBHHHHHHHHTTGGGGGTCCCCSHHHHHHHHCBTTBEEEEEC
T ss_pred cCCCCCHHHHHHHHHHHHHHhCCCCchhhHHHHHhCCCCeEEEEEc
Confidence 788999999999987752 114588997 766654
No 28
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=84.96 E-value=2.9 Score=32.78 Aligned_cols=51 Identities=12% Similarity=0.035 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhhcCCceEEEEecCCCCcEEEeecCCc-hHHHHHHHHHhhh
Q 019218 287 HRIISYVERWNRSVGSPQVCSFFAALSGRCYEFCDLKH-IFVLSILSASARE 337 (344)
Q Consensus 287 ~~l~~~v~~~~~~~g~~~~~~~sgAGpt~~~~~~~~~~-~~~~~~l~~~~~~ 337 (344)
+++-..++++..+.++..-+-++|+|++++.+....++ +...++|++.-|.
T Consensus 56 kelakeaerl~~efni~v~y~imgsgsgvm~i~f~gddlea~ekalkemirq 107 (170)
T 4hhu_A 56 KELAKEAERLKAEFNINVQYQIMGSGSGVMVIVFEGDDLEALEKALKEMIRQ 107 (170)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEEEECSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcceEEEEEEEeCCceEEEEEEecCcHHHHHHHHHHHHHH
Confidence 34445555555567775345566999999954444455 6677788887653
No 29
>2zv3_A PTH, peptidyl-tRNA hydrolase; cytoplasm, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=36.59 E-value=1.4e+02 Score=22.80 Aligned_cols=36 Identities=14% Similarity=0.133 Sum_probs=27.0
Q ss_pred CCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCC
Q 019218 276 SPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALS 313 (344)
Q Consensus 276 ~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGp 313 (344)
+|.+..-.++..++.++.++++ +.|.. .+..-|||-
T Consensus 49 ~~kivlk~~~e~~l~~l~~~a~-~~gl~-~~~i~DAG~ 84 (115)
T 2zv3_A 49 QKKVVVKVNSEKELIDIYNKAR-SEGLP-CSIIRDAGH 84 (115)
T ss_dssp CCEEEEEESSHHHHHHHHHHHH-HHTCC-EEEEEECC-
T ss_pred CeEEEEecCCHHHHHHHHHHHH-HcCCC-EEEEEeCCc
Confidence 5667677888899988888776 46875 667779993
No 30
>1wn2_A Peptidyl-tRNA hydrolase; riken structural genomics/proteomics initiative, structural genomics; 1.20A {Pyrococcus horikoshii} PDB: 2d3k_A
Probab=24.41 E-value=2.4e+02 Score=21.67 Aligned_cols=37 Identities=8% Similarity=0.048 Sum_probs=28.0
Q ss_pred CCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCCC
Q 019218 276 SPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSG 314 (344)
Q Consensus 276 ~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGpt 314 (344)
+|.+..-.++..++.++..+++ +.|.. .+..-|||-|
T Consensus 55 ~~Kvvlk~~~e~el~~l~~~a~-~~gl~-~~~i~DAG~T 91 (121)
T 1wn2_A 55 QKKVVVKVESEEELFKLKAEAE-KLGLP-NALIRDAGLT 91 (121)
T ss_dssp CCEEEEEESSHHHHHHHHHHHH-HTTCC-EEEEECTTCT
T ss_pred CcEEEEecCCHHHHHHHHHHHH-HCCCC-EEEEEcCCcc
Confidence 6667677888899998888776 46875 6667699863
No 31
>1q7s_A BIT1, protein CGI-147; apoptosis; 2.00A {Homo sapiens} SCOP: c.131.1.1
Probab=23.75 E-value=2.5e+02 Score=21.47 Aligned_cols=37 Identities=14% Similarity=0.146 Sum_probs=28.4
Q ss_pred CCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCCC
Q 019218 276 SPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSG 314 (344)
Q Consensus 276 ~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGpt 314 (344)
+|.+..-.++..++.++..+++ +.|.. .+...|||-|
T Consensus 51 ~~KVvlk~~~e~~l~~l~~~a~-~~gl~-~~~i~DAG~T 87 (117)
T 1q7s_A 51 QPKVVVKAPDEETLIALLAHAK-MLGLT-VSLIQDAGRT 87 (117)
T ss_dssp CCEEEEEESSHHHHHHHHHHHH-HTTCC-EEEEEECSSS
T ss_pred CeeEEEEcCCHHHHHHHHHHHH-HCCCC-EEEEEECCCc
Confidence 5666777888999999888776 46875 6667799963
No 32
>1xty_A PTH, peptidyl-tRNA hydrolase; mixed beta sheet; 1.80A {Pyrococcus abyssi}
Probab=21.40 E-value=2.8e+02 Score=21.25 Aligned_cols=36 Identities=19% Similarity=0.205 Sum_probs=28.2
Q ss_pred CCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCC
Q 019218 276 SPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALS 313 (344)
Q Consensus 276 ~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGp 313 (344)
+|.+..-.++..++.++..+++ +.|.. .+..-|||-
T Consensus 54 ~~KiVlk~~~e~el~~l~~~a~-~~gl~-~~~i~DAG~ 89 (120)
T 1xty_A 54 QPKIIVKVNSLDEIISRAKKAE-TMNLP-FSIIEDAGK 89 (120)
T ss_dssp CCEEEEEESSHHHHHHHHHHHH-HTTCC-EEEEECCSS
T ss_pred CcEEEEecCCHHHHHHHHHHHH-HCCCC-EEEEEcCCc
Confidence 6777777888899999888776 46875 667779993
No 33
>1rlk_A Hypothetical protein TA0108; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; HET: SO4; 1.95A {Thermoplasma acidophilum} SCOP: c.131.1.1
Probab=20.22 E-value=2.9e+02 Score=21.02 Aligned_cols=37 Identities=11% Similarity=-0.091 Sum_probs=27.8
Q ss_pred CCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCCC
Q 019218 276 SPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSG 314 (344)
Q Consensus 276 ~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGpt 314 (344)
+|.+..-.++..++.++..+++ +.|.. .+..-|||-|
T Consensus 51 ~~kiVlk~~~e~~l~~l~~~a~-~~gl~-~~~v~DAG~T 87 (117)
T 1rlk_A 51 QRKIVVKVNDLDEIMEIKRMAD-SMGIV-NEIVQDRGYT 87 (117)
T ss_dssp CCEEEEEESSHHHHHHHHHHHH-HHTCC-EEEEECCCSS
T ss_pred CeEEEEecCCHHHHHHHHHHHH-HCCCC-EEEEEeCCcc
Confidence 5666666788889988888776 46875 6677799864
Done!