BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019221
(344 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7VNP2|DUSB_HAEDU tRNA-dihydrouridine synthase B OS=Haemophilus ducreyi (strain
35000HP / ATCC 700724) GN=dusB PE=3 SV=1
Length = 320
Score = 37.4 bits (85), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 100 VDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVD--CLLITQSLDDHCHL 149
D +++G FG PWLF K+FL++ + DL +D C L+ + ++D H
Sbjct: 218 ADAVMIGRGSFGRPWLFQELKQFLETGDIIDLS-IDEKCQLMLKHIEDLHHF 268
>sp|P36022|DYHC_YEAST Dynein heavy chain, cytoplasmic OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=DYN1 PE=1 SV=1
Length = 4092
Score = 36.6 bits (83), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 75/187 (40%), Gaps = 39/187 (20%)
Query: 145 DHC------HLKTLKPLSKMSPNLKVIATPNAKTLLDPLFQNVTYVEPGQSSE------- 191
DHC +L KPL ++ P +KV N + LL + +++ +E G
Sbjct: 516 DHCPTEKLSYLVKFKPLMELCPRIKVKVLENQQILLLEIKKDIRQLETGLELLPKILHVE 575
Query: 192 -------IEGRNGSKLRVKATAGPVL-------GPPWQRPENGYLVNSSQGQLTLYYEPH 237
I R L V++ ++ G W G +++S QL PH
Sbjct: 576 ALNNIPPISARISYFLNVQSRIDNIVQYLEALFGSNWNDTLEGRSISTSIVQLRKETNPH 635
Query: 238 CVYNQ---NFLEKERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPMKNGDL 294
V+ NF EK ++++ TP++K L+ ED +L ++ F + +L
Sbjct: 636 DVFLHWLGNFPEKATANLLTTPILK-------LIRNNEDDYELK--VNFDFALAAAYSEL 686
Query: 295 DSKGFLA 301
S ++A
Sbjct: 687 RSLTYMA 693
>sp|B0TEP6|Y1673_HELMI UPF0173 metal-dependent hydrolase Helmi_16730 OS=Heliobacterium
modesticaldum (strain ATCC 51547 / Ice1) GN=Helmi_16730
PE=3 SV=1
Length = 238
Score = 36.6 bits (83), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 108/279 (38%), Gaps = 65/279 (23%)
Query: 78 VFKLTYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCL 137
+ +T+ ++L D KVL+DP GN I +D D +
Sbjct: 1 MLHVTFFGHANFLLDDGQTKVLIDPFFTGNPVCPIK---------------ADAVSADYI 45
Query: 138 LITQSLDDHCHLKTLKPLSKMSPNLKVIATPNAKTLLDPLFQNVTYVE----PGQSSEIE 193
L++ DH + IA T++ F+ +Y + I
Sbjct: 46 LVSHGHGDHL------------GDAIDIAKGTGATIISS-FELASYCQRKGVKAHGMAIG 92
Query: 194 GRNGSKL-RVKATA-----GPVLGPPWQRPEN--GYLVNSSQGQLTLYYEPHC------- 238
G+ RV+ TA G + G + N G+LVN G ++Y+
Sbjct: 93 GKRDFPFGRVRLTAAVHGSGIIEGDNYLDVGNPCGFLVN--MGGKSVYHAGDTGLTRDME 150
Query: 239 VYNQNFLEKERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPMKNGDLDSKG 298
+ N FL+ R D+ + P+ F + G EDA+ K+LH + IVPM
Sbjct: 151 LINMCFLKGGRLDLALLPIGDN----FGM--GPEDALYATKMLHPRMIVPMHYNTF---- 200
Query: 299 FLASIIQSEGTVESFKELLSKELPDAQLLEPTPGEPLEI 337
+I+ + V +FK +++ EL D++ PG+ L +
Sbjct: 201 ---PVIEQD--VAAFKRVVT-ELTDSECHVLAPGDTLTL 233
>sp|Q8U053|Y1764_PYRFU UPF0173 metal-dependent hydrolase PF1764 OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
GN=PF1764 PE=3 SV=1
Length = 225
Score = 35.8 bits (81), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 90/220 (40%), Gaps = 43/220 (19%)
Query: 80 KLTYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLI 139
K+T+L G++ + K+L+DP L GN + S + D VD +L+
Sbjct: 3 KVTFL-GHAAFYIEGSKKILIDPFLSGNP--------------VASAKPDDFKSVDLILV 47
Query: 140 TQSLDDHCHLKTLKPLSKMSPNLKVIATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSK 199
T + D HL + ++K + KV+A + + ++ V E G N
Sbjct: 48 THAHGD--HLGDVGTIAKRT-GAKVVAMYDLANYIAEKYKGV---------ETIGMNYGP 95
Query: 200 LRVKATAGPVLGPPWQRPENG-YLVNSSQGQL------TLYYEPHCVYNQNFLEKERSDI 252
+V V P W +G Y + ++ G + T+Y H F + E
Sbjct: 96 TKVDEVE-IVQVPAWHSSSDGKYSIGNACGYIVKLDGVTIY---HAGDTYVFKDMELFAE 151
Query: 253 IITPVIKQLLP---KFTLVSGQEDAVKLAKLLHAKFIVPM 289
+ P+ LLP FT+ G +A K +LL + ++PM
Sbjct: 152 LYGPIDVALLPIGGHFTM--GVREAAKAVELLKPRHVIPM 189
>sp|Q8U4Q7|AUBA_PYRFU RNA-binding protein AU-1 OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=aubA PE=1 SV=1
Length = 469
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 9/75 (12%)
Query: 263 PKFTLVSGQEDAVKLAKLLHAKFIVPMKNGDLDSKGFLASIIQSEGTVESFKELLSKELP 322
P+FTL AV +A+ + AK +P + + SKGFL +II S+G + L+ P
Sbjct: 279 PEFTL------AVDVAEGILAK--LPSQRQKI-SKGFLEAIITSKGPKVGWIFTLNHVKP 329
Query: 323 DAQLLEPTPGEPLEI 337
D Q+++ PGE +E+
Sbjct: 330 DGQIIKIGPGEVIEV 344
>sp|Q9V1C7|Y500_PYRAB UPF0173 metal-dependent hydrolase PYRAB05000 OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=PYRAB05000 PE=3 SV=1
Length = 225
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 84/217 (38%), Gaps = 50/217 (23%)
Query: 83 YLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQS 142
Y+EG+ K+L+DP L GN + D VD +L+T +
Sbjct: 13 YIEGSK--------KILIDPFLTGNPQ--------------AVAKPEDFKDVDLILVTHA 50
Query: 143 LDDHCHLKTLKPLSKMSPNLKVIATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRV 202
D H+ ++K+S K++A + + F+ V E G N V
Sbjct: 51 HGD--HIGDAGEIAKIS-GAKIVAMYDIANYIAEKFKGV---------ETVGMNYGPTEV 98
Query: 203 KATAGPVLGPPWQRPENG-YLVNSSQGQL------TLYYEPHCVYNQNFLEKERSDIIIT 255
V P W +G Y + ++ G + T+Y H F + E +
Sbjct: 99 DGVF-IVQVPAWHSSSDGKYSIGNASGFIVKLDGKTIY---HAGDTYVFKDMELFSELYG 154
Query: 256 PVIKQLLP---KFTLVSGQEDAVKLAKLLHAKFIVPM 289
P+ LLP FT+ G ++A K +LL + +VPM
Sbjct: 155 PIDVALLPIGGHFTM--GVKEAAKAVELLKPRTVVPM 189
>sp|A7GHK2|OBG_CLOBL GTPase obg OS=Clostridium botulinum (strain Langeland / NCTC 10281
/ Type F) GN=obg PE=3 SV=1
Length = 424
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 11/74 (14%)
Query: 161 NLKVIATPNAKTLLDPLFQNVTYVEP---GQSSEIEGRNGSKLRVKATAGPVLG------ 211
N+ ++ PN TLLD ++ EP G S+ G+NG L +K G ++
Sbjct: 43 NVVLVVDPNMTTLLDFTYKRKYKAEPGGNGAGSKCFGKNGKDLHIKVPMGTIVKDAETDK 102
Query: 212 --PPWQRPENGYLV 223
+PE+ Y+V
Sbjct: 103 IMADLSKPEDSYVV 116
>sp|B1ILY5|OBG_CLOBK GTPase obg OS=Clostridium botulinum (strain Okra / Type B1) GN=obg
PE=3 SV=1
Length = 424
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 11/74 (14%)
Query: 161 NLKVIATPNAKTLLDPLFQNVTYVEP---GQSSEIEGRNGSKLRVKATAGPVLG------ 211
N+ ++ PN TLLD ++ EP G S+ G+NG L +K G ++
Sbjct: 43 NVVLVVDPNMTTLLDFTYKRKYKAEPGGNGAGSKCFGKNGKDLHIKVPMGTIVKDVETDK 102
Query: 212 --PPWQRPENGYLV 223
+PE+ Y+V
Sbjct: 103 IMADLSKPEDSYVV 116
>sp|A5I666|OBG_CLOBH GTPase obg OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC
13319 / Type A) GN=obg PE=3 SV=1
Length = 424
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 11/74 (14%)
Query: 161 NLKVIATPNAKTLLDPLFQNVTYVEP---GQSSEIEGRNGSKLRVKATAGPVLG------ 211
N+ ++ PN TLLD ++ EP G S+ G+NG L +K G ++
Sbjct: 43 NVVLVVDPNMTTLLDFTYKRKYKAEPGGNGAGSKCFGKNGKDLHIKVPMGTIVKDAETDK 102
Query: 212 --PPWQRPENGYLV 223
+PE+ Y+V
Sbjct: 103 IMADLSKPEDSYVV 116
>sp|A7FXU6|OBG_CLOB1 GTPase obg OS=Clostridium botulinum (strain ATCC 19397 / Type A)
GN=obg PE=3 SV=1
Length = 424
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 11/74 (14%)
Query: 161 NLKVIATPNAKTLLDPLFQNVTYVEP---GQSSEIEGRNGSKLRVKATAGPVLG------ 211
N+ ++ PN TLLD ++ EP G S+ G+NG L +K G ++
Sbjct: 43 NVVLVVDPNMTTLLDFTYKRKYKAEPGGNGAGSKCFGKNGKDLHIKVPMGTIVKDAETDK 102
Query: 212 --PPWQRPENGYLV 223
+PE+ Y+V
Sbjct: 103 IMADLSKPEDSYVV 116
>sp|B1KZR3|OBG_CLOBM GTPase obg OS=Clostridium botulinum (strain Loch Maree / Type A3)
GN=obg PE=3 SV=1
Length = 424
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 11/74 (14%)
Query: 161 NLKVIATPNAKTLLDPLFQNVTYVEP---GQSSEIEGRNGSKLRVKATAGPVLG------ 211
N+ ++ PN TLLD ++ EP G S+ G+NG L +K G ++
Sbjct: 43 NVVLVVDPNMTTLLDFTYKRKYKAEPGGNGAGSKCFGKNGKDLHIKVPMGTIVKDAETDK 102
Query: 212 --PPWQRPENGYLV 223
+PE+ Y+V
Sbjct: 103 IMADLSKPEDSYVV 116
>sp|Q317E4|Y151_DESDG UPF0173 metal-dependent hydrolase Dde_0151 OS=Desulfovibrio
desulfuricans (strain G20) GN=Dde_0151 PE=3 SV=1
Length = 240
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 11/79 (13%)
Query: 265 FTLVSGQEDAVKLAKLLHAKFIVPMKNGDLDSKGFLASIIQSEGTVESFKELLSKELPDA 324
FT+ + Q A +LL A+ +VPM G EG FKE L PD
Sbjct: 169 FTMDAKQ--AALACRLLRARSVVPMHWGTFPVL---------EGNTARFKEQLMNFAPDC 217
Query: 325 QLLEPTPGEPLEIPAPSDN 343
+L + PGE L + S+
Sbjct: 218 RLFDMKPGETLTLETASEG 236
>sp|P18035|TRBB_ECOLI Protein TrbB OS=Escherichia coli (strain K12) GN=trbB PE=4 SV=2
Length = 181
Score = 33.1 bits (74), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 40/104 (38%), Gaps = 19/104 (18%)
Query: 171 KTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLG---------PPWQRPENGY 221
K+LL L + V+ EIE + A P G P W R NG
Sbjct: 5 KSLLFTLLLSAAAVQASTRDEIERLWNPQGMATQPAQPAAGTSARTAKPAPRWFRLSNGR 64
Query: 222 LVNSSQGQLTLYYEPHCVYNQNFLEKERSDIIITPVIKQLLPKF 265
VN + ++ L+ + HC Y F PV+KQL ++
Sbjct: 65 QVNLADWKVVLFMQGHCPYCHQF----------DPVLKQLAQQY 98
>sp|O59330|Y1671_PYRHO UPF0173 metal-dependent hydrolase PH1671 OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=PH1671 PE=3 SV=2
Length = 225
Score = 32.7 bits (73), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 87/218 (39%), Gaps = 52/218 (23%)
Query: 83 YLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQS 142
Y+EG+ K+L+DP L GN + + D VD +L+T +
Sbjct: 13 YIEGSK--------KILIDPFLTGNPQ--------------AAARPEDFKDVDLILVTHA 50
Query: 143 LDDHCHLKTLKPLSKMSPNLKVIATPNAKTLLDPLFQNVTYVEPGQS-SEIEGRNGSKLR 201
D HL ++++S K++A + + +++V + +EI+G ++
Sbjct: 51 HGD--HLGDAGEIARIS-GAKIVAMYDLANYISEKYKDVETIGMNYGPTEIDGVFIVQV- 106
Query: 202 VKATAGPVLGPPWQRPENG-YLVNSSQGQL------TLYYEPHCVYNQNFLEKERSDIII 254
P W +G Y + + G + T+Y H F + E +
Sbjct: 107 ----------PAWHSSSDGKYSIGNPSGYIVKLDDVTIY---HAGDTYVFKDMELFAELY 153
Query: 255 TPVIKQLLP---KFTLVSGQEDAVKLAKLLHAKFIVPM 289
P+ LLP FT+ G +A K +LL + +VPM
Sbjct: 154 GPIDVALLPIGGHFTM--GVREAAKAVELLKPRKVVPM 189
>sp|O57857|AUBA_PYRHO RNA-binding protein AU-1 OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=aubA PE=3 SV=2
Length = 469
Score = 32.7 bits (73), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 9/75 (12%)
Query: 263 PKFTLVSGQEDAVKLAKLLHAKFIVPMKNGDLDSKGFLASIIQSEGTVESFKELLSKELP 322
P+FTL AV++A+ + AK P + + S+GF+ +I+ S+G + L+ P
Sbjct: 279 PEFTL------AVEVAEGILAKM--PSQRQKI-SEGFIEAIVNSKGPKLGWMFTLNHVKP 329
Query: 323 DAQLLEPTPGEPLEI 337
D Q+++ PGE +E+
Sbjct: 330 DGQVIKIGPGEVIEV 344
>sp|Q8TV58|Y1542_METKA UPF0173 metal-dependent hydrolase MK1542 OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
GN=MK1542 PE=3 SV=1
Length = 230
Score = 32.0 bits (71), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 47/228 (20%), Positives = 87/228 (38%), Gaps = 48/228 (21%)
Query: 79 FKLTYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLL 138
++T+L ++ ++DGV VL+DP L GN K+ + D D +L
Sbjct: 1 MRITWLGHAAFEVEIDGVNVLIDPFLSGN---------------PKAAKSPDEVDPDLVL 45
Query: 139 ITQSLDDHCHLKTLKPLSKMSPNLKVIATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGS 198
+T D HL + K + V A +NV + G + E+EG +
Sbjct: 46 VTHGHGD--HLGDAVEICKRTGATLVGIYEIAVYAQGQGVENVEEMNIGGTIEVEGLEIT 103
Query: 199 KLRVKATAGPVLGPPWQRPE-------------NGYLVNSSQGQLTLYYEPHCVYNQNFL 245
++ P W E GY+V+ +G + + + +
Sbjct: 104 QV-----------PAWHSSEIVEDGEIVAGGTPVGYVVSGEEGSVYHAGDTGLSMDMKLI 152
Query: 246 -EKERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPMKNG 292
E ++ + P+ +FT+ G ++A K +L+ + +PM G
Sbjct: 153 GELYEPEVALLPIGS----RFTM--GPKEAAKAVELIEPEVAIPMHYG 194
>sp|Q5RBD9|TBCE_PONAB Tubulin-specific chaperone E OS=Pongo abelii GN=TBCE PE=2 SV=1
Length = 527
Score = 32.0 bits (71), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 16/134 (11%)
Query: 187 GQSSEIEGRNGSKLR----VKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQ 242
GQ E+ G + + +R V AGP LG W PE G S +G T+Y++
Sbjct: 11 GQRVEVNGEHAT-VRFAGVVPPVAGPWLGVEWDNPERGKHDGSHEG--TVYFQCRHPTGG 67
Query: 243 NFLEKERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPMKNGDLDSKGFLAS 302
+F+ + + T + + ++ L G E+ K + IV + N +++ GF S
Sbjct: 68 SFIRPNKVN-FGTDFLTAIKNRYVLEDGPEEDRK-------EQIVTIGNKPVETIGF-DS 118
Query: 303 IIQSEGTVESFKEL 316
I++ + + +E+
Sbjct: 119 IMKQQSQLSKLQEV 132
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 130,581,142
Number of Sequences: 539616
Number of extensions: 5491930
Number of successful extensions: 14352
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 14346
Number of HSP's gapped (non-prelim): 28
length of query: 344
length of database: 191,569,459
effective HSP length: 118
effective length of query: 226
effective length of database: 127,894,771
effective search space: 28904218246
effective search space used: 28904218246
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)