Query 019221
Match_columns 344
No_of_seqs 301 out of 2465
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 07:42:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019221.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019221hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3798 Predicted Zn-dependent 100.0 4.8E-42 1E-46 303.2 16.6 245 77-336 79-340 (343)
2 PRK11709 putative L-ascorbate 100.0 3.3E-36 7.2E-41 288.9 25.8 249 73-340 32-327 (355)
3 COG2220 Predicted Zn-dependent 100.0 5.4E-35 1.2E-39 270.7 24.8 234 76-340 4-253 (258)
4 PRK00685 metal-dependent hydro 100.0 1.9E-34 4.2E-39 261.7 24.8 217 79-337 1-228 (228)
5 PF13483 Lactamase_B_3: Beta-l 100.0 2E-27 4.3E-32 205.2 14.7 158 80-290 1-163 (163)
6 PF12706 Lactamase_B_2: Beta-l 99.8 1.3E-19 2.9E-24 159.4 13.7 151 130-291 26-194 (194)
7 PRK11244 phnP carbon-phosphoru 99.8 2.5E-18 5.5E-23 158.5 21.5 174 86-293 37-223 (250)
8 TIGR02651 RNase_Z ribonuclease 99.8 5.2E-18 1.1E-22 160.1 19.1 211 85-337 17-299 (299)
9 PRK02113 putative hydrolase; P 99.8 2.9E-17 6.2E-22 151.5 20.1 174 86-293 35-225 (252)
10 TIGR03307 PhnP phosphonate met 99.8 3.6E-17 7.8E-22 149.6 20.1 174 86-293 27-213 (238)
11 TIGR02649 true_RNase_BN ribonu 99.7 7.5E-17 1.6E-21 152.8 19.2 213 85-337 16-303 (303)
12 PRK00055 ribonuclease Z; Revie 99.7 3.8E-17 8.3E-22 151.5 16.2 222 79-340 2-269 (270)
13 PRK05184 pyrroloquinoline quin 99.6 2E-14 4.4E-19 136.1 19.7 191 86-293 39-271 (302)
14 COG1234 ElaC Metal-dependent h 99.6 9.4E-14 2E-18 130.8 18.1 95 229-337 190-291 (292)
15 TIGR02108 PQQ_syn_pqqB coenzym 99.6 3.2E-13 6.9E-18 127.7 18.9 194 86-293 38-271 (302)
16 PRK02126 ribonuclease Z; Provi 99.5 4.1E-13 8.9E-18 128.7 19.1 180 82-293 12-315 (334)
17 PRK04286 hypothetical protein; 99.5 3.4E-12 7.4E-17 120.7 21.7 217 86-329 15-276 (298)
18 TIGR00649 MG423 conserved hypo 99.5 6.6E-13 1.4E-17 131.5 16.8 190 85-292 13-227 (422)
19 TIGR03675 arCOG00543 arCOG0054 99.5 1.4E-12 3.1E-17 134.2 19.7 192 76-289 172-409 (630)
20 smart00849 Lactamase_B Metallo 99.4 8.3E-13 1.8E-17 114.2 10.0 168 82-290 2-183 (183)
21 COG0595 mRNA degradation ribon 99.4 1E-11 2.2E-16 125.1 16.4 172 77-266 7-208 (555)
22 COG1782 Predicted metal-depend 99.3 7E-11 1.5E-15 114.7 17.2 191 77-290 179-416 (637)
23 PRK11921 metallo-beta-lactamas 99.3 1.5E-11 3.2E-16 120.8 10.0 127 87-238 34-163 (394)
24 PLN02398 hydroxyacylglutathion 99.2 2.9E-10 6.4E-15 108.3 13.7 159 84-295 84-249 (329)
25 PLN02469 hydroxyacylglutathion 99.2 3.4E-10 7.4E-15 104.9 13.7 162 84-295 9-179 (258)
26 TIGR03413 GSH_gloB hydroxyacyl 99.2 2.6E-10 5.6E-15 105.2 11.1 155 88-294 12-168 (248)
27 COG1236 YSH1 Predicted exonucl 99.1 2.8E-09 6E-14 105.6 18.1 175 85-289 13-223 (427)
28 PRK05452 anaerobic nitric oxid 99.1 3E-10 6.5E-15 114.0 11.3 128 87-238 36-167 (479)
29 COG0426 FpaA Uncharacterized f 99.1 8.6E-11 1.9E-15 112.8 6.6 182 87-295 37-227 (388)
30 COG2248 Predicted hydrolase (m 99.1 3.3E-09 7.2E-14 95.2 15.1 216 88-328 17-274 (304)
31 PF00753 Lactamase_B: Metallo- 99.1 7.7E-11 1.7E-15 101.6 4.4 179 83-290 3-194 (194)
32 PLN02962 hydroxyacylglutathion 99.1 1.8E-09 3.9E-14 99.6 12.4 163 85-291 22-192 (251)
33 PRK10241 hydroxyacylglutathion 99.0 1.8E-09 3.9E-14 99.7 11.0 155 88-295 14-170 (251)
34 TIGR02650 RNase_Z_T_toga ribon 99.0 1E-08 2.3E-13 94.9 15.2 156 130-293 37-246 (277)
35 COG1237 Metal-dependent hydrol 99.0 4.4E-08 9.6E-13 88.9 16.6 72 88-172 24-96 (259)
36 KOG1136 Predicted cleavage and 98.9 6.7E-08 1.4E-12 90.0 16.2 182 84-290 15-240 (501)
37 KOG2121 Predicted metal-depend 98.9 7.8E-10 1.7E-14 111.9 3.8 201 76-293 440-688 (746)
38 KOG1137 mRNA cleavage and poly 98.9 2.3E-08 5E-13 98.2 12.2 159 76-257 11-207 (668)
39 TIGR00361 ComEC_Rec2 DNA inter 98.9 1E-07 2.3E-12 99.6 18.0 201 78-319 439-651 (662)
40 COG1235 PhnP Metal-dependent h 98.8 5E-08 1.1E-12 91.0 13.7 152 132-295 61-239 (269)
41 PRK11539 ComEC family competen 98.8 8.5E-08 1.8E-12 101.6 16.2 181 76-290 498-689 (755)
42 KOG0813 Glyoxylase [General fu 98.8 2.5E-08 5.3E-13 91.4 9.2 132 130-296 48-183 (265)
43 COG2333 ComEC Predicted hydrol 98.7 4.9E-07 1.1E-11 84.9 15.9 182 79-289 44-238 (293)
44 COG0491 GloB Zn-dependent hydr 98.7 3.6E-08 7.9E-13 89.1 7.7 131 86-242 25-172 (252)
45 KOG1135 mRNA cleavage and poly 98.0 4.2E-05 9.1E-10 77.5 11.3 149 87-256 16-197 (764)
46 KOG0814 Glyoxylase [General fu 97.7 2.7E-05 5.8E-10 66.7 3.7 116 89-239 24-142 (237)
47 PF02112 PDEase_II: cAMP phosp 97.7 0.0017 3.8E-08 62.2 15.5 189 133-332 79-335 (335)
48 KOG1361 Predicted hydrolase in 97.5 0.00049 1.1E-08 68.2 9.9 131 133-281 112-252 (481)
49 PF14597 Lactamase_B_5: Metall 97.5 0.00062 1.3E-08 58.9 8.5 155 85-291 22-181 (199)
50 KOG4736 Uncharacterized conser 96.1 0.021 4.6E-07 53.0 7.4 161 84-296 94-260 (302)
51 COG5212 PDE1 Low-affinity cAMP 92.8 4 8.7E-05 38.0 13.5 189 132-335 111-354 (356)
52 KOG1137 mRNA cleavage and poly 85.7 6.1 0.00013 40.2 9.6 60 267-340 397-460 (668)
53 TIGR00649 MG423 conserved hypo 85.5 1.5 3.2E-05 43.5 5.5 62 264-339 357-419 (422)
54 COG2015 Alkyl sulfatase and re 83.8 0.32 7E-06 48.4 -0.1 70 87-168 127-201 (655)
55 PF07521 RMMBL: RNA-metabolisi 78.4 2.7 5.9E-05 27.5 3.0 27 266-292 15-41 (43)
56 PF13691 Lactamase_B_4: tRNase 70.3 7.5 0.00016 27.9 3.7 46 86-147 12-61 (63)
57 KOG3798 Predicted Zn-dependent 69.0 2.1 4.4E-05 39.4 0.7 61 91-155 99-160 (343)
58 KOG3592 Microtubule-associated 59.3 4.3 9.3E-05 42.5 1.0 46 88-147 50-95 (934)
59 COG0595 mRNA degradation ribon 53.8 21 0.00046 36.9 5.0 60 267-340 370-430 (555)
60 TIGR03675 arCOG00543 arCOG0054 50.3 32 0.0007 36.1 5.8 58 265-337 570-629 (630)
61 KOG1136 Predicted cleavage and 36.8 98 0.0021 29.9 6.1 61 265-340 388-448 (501)
62 PF00478 IMPDH: IMP dehydrogen 34.9 27 0.00059 33.9 2.2 45 133-178 120-170 (352)
63 COG3669 Alpha-L-fucosidase [Ca 34.3 53 0.0011 32.3 4.0 29 268-296 53-83 (430)
64 PRK05096 guanosine 5'-monophos 33.1 34 0.00073 33.1 2.5 47 132-179 121-173 (346)
65 TIGR01305 GMP_reduct_1 guanosi 32.9 61 0.0013 31.3 4.2 46 132-178 120-171 (343)
66 PF07522 DRMBL: DNA repair met 32.4 48 0.001 26.1 3.0 25 265-289 81-105 (110)
67 COG4090 Uncharacterized protei 27.5 96 0.0021 25.7 3.9 72 220-298 46-132 (154)
68 PF13478 XdhC_C: XdhC Rossmann 25.3 65 0.0014 26.7 2.6 32 131-166 54-85 (136)
69 PF00797 Acetyltransf_2: N-ace 23.5 89 0.0019 28.0 3.4 24 83-106 85-108 (240)
No 1
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=100.00 E-value=4.8e-42 Score=303.19 Aligned_cols=245 Identities=21% Similarity=0.293 Sum_probs=200.7
Q ss_pred CceEEEEEeCcEEEEEeCCcEEEEccccCCCCCCCcccccccCCcccC-CCCCCCCCCccEEEecCCCCCCCChhhHHHh
Q 019221 77 DVFKLTYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLK-SFQLSDLPQVDCLLITQSLDDHCHLKTLKPL 155 (344)
Q Consensus 77 ~~~~it~lGhss~li~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~-~~~~~~lp~iD~VlISH~H~DHld~~tl~~L 155 (344)
..+--|||||||.++..+|.++++||+|+.++++ -..||+|..+ +..++++|++|.+++||+||||+|..+++.+
T Consensus 79 ~~~~~twlg~a~~~~~~~g~~~~tdpvf~d~~if----~s~gPkry~~pp~~~~~~p~~d~~~vsh~h~dhld~~~~~~~ 154 (343)
T KOG3798|consen 79 SDLFATWLGHATVLVDLEGVKFVTDPVWADRASF----TSFGPKRYRPPPMKLEDLPDLDFAVVSHDHYDHLDADAVKKI 154 (343)
T ss_pred CcHHHhhhcceeEEEeccCcEEecchhhccchhh----cccCcccccCCchhhccCCCCceeccccccccccchHHHHhh
Confidence 3456799999999999999999999999987764 2236766555 6778999999999999999999999999999
Q ss_pred hhcCCCceEEEccchHH-HHhhcC-CceEEeCCCceEEeCcccCCcEEEEEeecCCcC-CC-CCCC---CCeEEEEeCCC
Q 019221 156 SKMSPNLKVIATPNAKT-LLDPLF-QNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLG-PP-WQRP---ENGYLVNSSQG 228 (344)
Q Consensus 156 ~~~~p~~~v~~~~~~~~-~l~~~~-~~i~~l~~~~~~~~~~~~~~~~~i~~~p~~~~g-~~-~~~~---~~g~vi~~~~g 228 (344)
..+. .++.++|++.. ++...+ ..++++.||++.++- +++..++|.++|++|++ |+ ++.| |+||.+...+
T Consensus 155 ~~~~--~~~wfvp~g~k~~m~~~gc~~v~el~wwe~~~~v-kn~~~~ti~~tPaqHw~~R~L~D~Nk~LW~sw~v~g~~- 230 (343)
T KOG3798|consen 155 TDRN--PQIWFVPLGMKKWMEGDGSSTVTELNWGESSEFV-KNGKTYTIWCLPAQHWGQRGLFDRNKRLWSSWAVIGEN- 230 (343)
T ss_pred hccC--ccceeehhhhhheecCCCCCceeEeeccchhcee-cCCcEEEEEEcchhhhcccccccCCcceeeeeEEecCC-
Confidence 8874 55577888765 555554 568999999987763 22457999999999875 54 3333 9999999885
Q ss_pred ceEEEEcCCCCCcc-hhhcc----cCccEEEEccccccCCCccc---ccCHHHHHHHHHHcCCCEEEEeeeCCccCcccc
Q 019221 229 QLTLYYEPHCVYNQ-NFLEK----ERSDIIITPVIKQLLPKFTL---VSGQEDAVKLAKLLHAKFIVPMKNGDLDSKGFL 300 (344)
Q Consensus 229 ~~~i~~sGDt~~~~-~~~~~----~~~Dl~il~~~g~~~~~~~~---h~~~eea~~~~~~l~~k~vip~H~~~f~~~~~~ 300 (344)
.++||+|||||++ .|++| |++|||.+|| |||.|+|.| |.+|+||+++++++++|.+|.+|||||.+.+
T Consensus 231 -nrfffaGDTGyc~~~F~~IgerfGpfdLAaiPi-GaYePrWfmK~~HInPeEav~Ihkdv~arns~gIHWGTf~l~~-- 306 (343)
T KOG3798|consen 231 -NRFFFAGDTGYCDGEFKKIGERFGPFDLAAIPI-GAYEPRWFMKSQHINPEEAVEIHKDVRAKNSIGIHWGTFHLGS-- 306 (343)
T ss_pred -ceEEecCCCCcccHHHHHHHHhcCCcceeeccc-cccCchhhcccccCCHHHHHHHHHHHhhhcceeEeeeeeeccc--
Confidence 5999999999998 78776 5999999999 999999987 9999999999999999999999999999733
Q ss_pred cccccccCCHHHHHHHHHhcCCC-CeeeccCCCCeEE
Q 019221 301 ASIIQSEGTVESFKELLSKELPD-AQLLEPTPGEPLE 336 (344)
Q Consensus 301 ~~~l~~~~~~e~~~~~~~~~~~~-~~~~~~~~Ge~~~ 336 (344)
... -...+.+++++++.+.. ..+++++.||..+
T Consensus 307 Eyy---LEP~~KL~el~e~~glkd~~f~~~e~Ge~~e 340 (343)
T KOG3798|consen 307 EYY---LEPRDKLKELMEAEGLKDTSFVTIEMGEIWE 340 (343)
T ss_pred cee---cCcHHHHHHHHHhcCCCCceEEeeccccccc
Confidence 111 23467888888887754 5599999999554
No 2
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=100.00 E-value=3.3e-36 Score=288.85 Aligned_cols=249 Identities=16% Similarity=0.206 Sum_probs=187.1
Q ss_pred ccCCCceEEEEEeCcEEEEEe-CCcEEEEccccCCCCC--CCcccc--------cccCCc-----cc-C-CCCCCCCCCc
Q 019221 73 AVATDVFKLTYLEGNSWLWDL-DGVKVLVDPILVGNLD--FGIPWL--------FDAGKK-----FL-K-SFQLSDLPQV 134 (344)
Q Consensus 73 ~~~~~~~~it~lGhss~li~~-~g~~ILiDP~~~g~~s--~p~~~~--------~~~~~~-----~~-~-~~~~~~lp~i 134 (344)
..++++++++|||||+++|++ +|.+||||++++ +++ ...|+. ..|+++ |. + +++++++++|
T Consensus 32 ~~~~~~~~~~wlG~a~~li~~~~g~~ILiD~~~~-~g~~~~~~~~~~~~~~~~~~~G~~~~~P~lr~~p~~idp~~i~~I 110 (355)
T PRK11709 32 VVPPGTFAMWWLGCTGIWLKTEGGTNVCVDLWCG-TGKQTHGNPLMKRGHQMARMAGVRKLQPNLRTQPFVLDPFAIREI 110 (355)
T ss_pred ccCCCcEEEEEecceEEEEEcCCCcEEEEeecCC-CCCccccccccccccchhhhccccccCCCCCCCCcccCHHHCCCC
Confidence 335688999999999999998 689999998775 322 001111 012211 12 2 4666789999
Q ss_pred cEEEecCCCCCCCChhhHHHhhhcC-CCceEEEccchHHHHhhcC---CceEEeCCCceEEeCcccCCcEEEEEeecCC-
Q 019221 135 DCLLITQSLDDHCHLKTLKPLSKMS-PNLKVIATPNAKTLLDPLF---QNVTYVEPGQSSEIEGRNGSKLRVKATAGPV- 209 (344)
Q Consensus 135 D~VlISH~H~DHld~~tl~~L~~~~-p~~~v~~~~~~~~~l~~~~---~~i~~l~~~~~~~~~~~~~~~~~i~~~p~~~- 209 (344)
|+|||||.|+||+|.+++..|.+.+ ++++++++.....++.+++ .++++++||++++++ +++|+++|+.+
T Consensus 111 DaVLiTH~H~DHlD~~tl~~l~~~~~~~~~~v~p~~~~~~~~~~Gvp~~rv~~v~~Ge~i~ig-----~v~It~lpa~h~ 185 (355)
T PRK11709 111 DAVLATHDHSDHIDVNVAAAVLQNCADHVKFIGPQACVDLWIGWGVPKERCIVVKPGDVVKVK-----DIKIHALDSFDR 185 (355)
T ss_pred CEEEECCCcccccChHHHHHHHhhcCCCcEEEEcHHHHHHHHhcCCCcceEEEecCCCcEEEC-----CEEEEEEecccc
Confidence 9999999999999999999987754 2455655444455777775 579999999999997 89999999843
Q ss_pred ----------cC---CC---CCCCCCeEEEEeCCCceEEEEcCCCCCcchhhccc---CccEEEEccccccCCCc-cccc
Q 019221 210 ----------LG---PP---WQRPENGYLVNSSQGQLTLYYEPHCVYNQNFLEKE---RSDIIITPVIKQLLPKF-TLVS 269 (344)
Q Consensus 210 ----------~g---~~---~~~~~~g~vi~~~~g~~~i~~sGDt~~~~~~~~~~---~~Dl~il~~~g~~~~~~-~~h~ 269 (344)
+. +. ....+.||+|++++ .+|||+|||+|.+.|.+++ ++|++++++ |+ .|.+ ..||
T Consensus 186 ~~~i~~p~~h~~~~~~~~~d~~~~~~gyvie~~~--~tvy~sGDT~~~~~~~~i~~~~~iDvall~i-G~-~p~~~~~hm 261 (355)
T PRK11709 186 TALVTLPADGKAAGGVLPDDMDRRAVNYLFKTPG--GNIYHSGDSHYSNYFAKHGNDHQIDVALGSY-GE-NPRGITDKM 261 (355)
T ss_pred ccccccccccccccccccccCCcceEEEEEEeCC--eEEEEeCCCCccHHHHHHHhcCCCCEEEecC-CC-CCCCCcCCC
Confidence 21 11 11135799999884 7999999999998887653 799999999 65 4543 4599
Q ss_pred CHHHHHHHHHHcCCCEEEEeeeCCccCcccccccccccCCHHHHHHHHHhcC--CC--CeeeccCCCCeEEcCCC
Q 019221 270 GQEDAVKLAKLLHAKFIVPMKNGDLDSKGFLASIIQSEGTVESFKELLSKEL--PD--AQLLEPTPGEPLEIPAP 340 (344)
Q Consensus 270 ~~eea~~~~~~l~~k~vip~H~~~f~~~~~~~~~l~~~~~~e~~~~~~~~~~--~~--~~~~~~~~Ge~~~l~~~ 340 (344)
+++||++++++++++++||+||++|.. . ..++++++++.+-+. .. .+-.+.+.|..+....+
T Consensus 262 ~p~ea~~~a~~l~ak~vIpiH~dtf~~-------~--~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (355)
T PRK11709 262 TSIDILRMAESLNAKVVIPVHHDIWSN-------F--QADPQEILVLWKMRKDRLQYGFHPFIWQVGGKFTYPQD 327 (355)
T ss_pred CHHHHHHHHHHcCCCEEEEEChhhccc-------c--ccCHHHHHHHHHhhhhhccccccceEEecCCEecCCCC
Confidence 999999999999999999999999985 3 677999999987532 22 34456788888877655
No 3
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=100.00 E-value=5.4e-35 Score=270.71 Aligned_cols=234 Identities=23% Similarity=0.291 Sum_probs=186.5
Q ss_pred CCceEEEEEeCcEEEEEeCCcEEEEccccCCCCCCCcccccccCCcccCCCCCCCCCCccEEEecCCCCCCCChhhHHHh
Q 019221 76 TDVFKLTYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPL 155 (344)
Q Consensus 76 ~~~~~it~lGhss~li~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~L 155 (344)
...|+|||+||||++|++++++|||||+++++.+ +..+.. ......++++|+|+|||+|+||+|..++..+
T Consensus 4 ~~~m~itwlGha~~lie~~~~~iliDP~~~~~~~-~~~~~~--------~~~~~~~~~~D~ilitH~H~DHl~~~~~~~~ 74 (258)
T COG2220 4 AEDMKITWLGHAAFLIETGGKRILIDPVLSGAPS-PSNFPG--------GLFEDLLPPIDYILITHDHYDHLDDETLIAL 74 (258)
T ss_pred CcCceEEEecceEEEEEECCEEEEECcccCCCCC-cccccC--------cCChhhcCCCCEEEEeCCCccccCHHHHHHH
Confidence 5689999999999999999999999999998766 322210 1234556789999999999999999998888
Q ss_pred hhcCCCceEEEccchHH-HHhhcC---CceEEeCCCceEEeCcccCCcEEEEEeecCCcC-CCC-------CCCCCeEEE
Q 019221 156 SKMSPNLKVIATPNAKT-LLDPLF---QNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLG-PPW-------QRPENGYLV 223 (344)
Q Consensus 156 ~~~~p~~~v~~~~~~~~-~l~~~~---~~i~~l~~~~~~~~~~~~~~~~~i~~~p~~~~g-~~~-------~~~~~g~vi 223 (344)
... +++++++|.+.. .+.+++ .++++++||+.++++ +++|+++++.|+. +.. ...|+||+|
T Consensus 75 ~~~--~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----~~~i~~~~a~h~~~~~~~~~~~~~~~~~~~~vi 147 (258)
T COG2220 75 RTN--KAPVVVVPLGAGDLLIRDGVEAERVHELGWGDVIELG-----DLEITAVPAYHVSARHLPGRGIRPTGLWVGYVI 147 (258)
T ss_pred hcC--CCcEEEeHHHHHHHHHhcCCCcceEEeecCCceEEec-----CcEEEEEEeecccccccCCCCccccCCceEEEE
Confidence 742 477888998875 565775 469999999999997 8999888887543 222 134899999
Q ss_pred EeCCCceEEEEcCCCCCcchhhcc---cCccEEEEccccccCCCcccccCHHHHHHHHHHcCCCEEEEeeeC-CccCccc
Q 019221 224 NSSQGQLTLYYEPHCVYNQNFLEK---ERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPMKNG-DLDSKGF 299 (344)
Q Consensus 224 ~~~~g~~~i~~sGDt~~~~~~~~~---~~~Dl~il~~~g~~~~~~~~h~~~eea~~~~~~l~~k~vip~H~~-~f~~~~~ 299 (344)
+.++ .++|++||++| ..+... +++|++++|+ |.|...+ +|++++++++.+.++++.++|+||+ +|..
T Consensus 148 ~~~g--~~iyh~GDt~~-~~~~~~~~~~~~DvallPi-g~~~~~~--~~~~~~~~~~~~~l~~~~viP~Hy~~~~~~--- 218 (258)
T COG2220 148 ETPG--GRVYHAGDTGY-LFLIIEELDGPVDVALLPI-GGYPNAT--MMPPEAAVAAAEVLRPKRVIPMHYGPTFPP--- 218 (258)
T ss_pred EeCC--ceEEeccCccH-HHHhhhhhcCCccEEEecc-CCCCCCc--cCCHHHHHHHHHHhcCCeEEeecccccCcc---
Confidence 9984 79999999999 333222 3689999999 7676433 4589999999999999999999999 7764
Q ss_pred ccccccccCCHHHHHHHHHhcCCCCeeeccCCCCeEEcCCC
Q 019221 300 LASIIQSEGTVESFKELLSKELPDAQLLEPTPGEPLEIPAP 340 (344)
Q Consensus 300 ~~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~Ge~~~l~~~ 340 (344)
+ ....+.|+..+...+...++.+++.||.+.+...
T Consensus 219 ----~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 253 (258)
T COG2220 219 ----I--EEDPEEFLHALDAGGEPVKVFILELGESVELEQS 253 (258)
T ss_pred ----c--cCCHHHHHHhhhhcCCCceeeEecCCceEEcccc
Confidence 3 5668999999888665678899999999987644
No 4
>PRK00685 metal-dependent hydrolase; Provisional
Probab=100.00 E-value=1.9e-34 Score=261.67 Aligned_cols=217 Identities=24% Similarity=0.363 Sum_probs=172.5
Q ss_pred eEEEEEeCcEEEEEeCCcEEEEccccCCCCCCCcccccccCCcccCCCCCCCCCCccEEEecCCCCCCCChhhHHHhhhc
Q 019221 79 FKLTYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKM 158 (344)
Q Consensus 79 ~~it~lGhss~li~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~L~~~ 158 (344)
|+|+|+||||++|+.+|.+|||||++++++.. .+..+++ ++|+|||||.|+||++ .+..+..+
T Consensus 1 m~i~~lG~s~~li~~~~~~iLiDP~~~~~~~~--------------~~~~~~~-~id~vliTH~H~DH~~--~~~~~~~~ 63 (228)
T PRK00685 1 MKITWLGHSAFLIETGGKKILIDPFITGNPLA--------------DLKPEDV-KVDYILLTHGHGDHLG--DTVEIAKR 63 (228)
T ss_pred CEEEEEcceEEEEEECCEEEEECCCCCCCCCC--------------CCChhcC-cccEEEeCCCCccccc--cHHHHHHh
Confidence 68999999999999999999999998753321 1223344 8999999999999986 33344433
Q ss_pred CCCceEEEccchHHHHhhcC-CceEEeCCCceEEeCcccCCcEEEEEeecCCcCCCC-------CCCCCeEEEEeCCCce
Q 019221 159 SPNLKVIATPNAKTLLDPLF-QNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPW-------QRPENGYLVNSSQGQL 230 (344)
Q Consensus 159 ~p~~~v~~~~~~~~~l~~~~-~~i~~l~~~~~~~~~~~~~~~~~i~~~p~~~~g~~~-------~~~~~g~vi~~~~g~~ 230 (344)
+++++|+++....++++.+ .++++++++++++++ +++|+++|+.|+.... .+++.||+|+.++ .
T Consensus 64 -~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~p~~H~~~~~~~~~~~~~~~~~g~~i~~~~--~ 135 (228)
T PRK00685 64 -TGATVIANAELANYLSEKGVEKTHPMNIGGTVEFD-----GGKVKLTPALHSSSFIDEDGITYLGNPTGFVITFEG--K 135 (228)
T ss_pred -CCCEEEEeHHHHHHHHhcCCCceeeccCCCcEEEC-----CEEEEEEEEEcCCCCcCCCCcccCCCceEEEEEECC--e
Confidence 3788888777666777664 488999999999997 8999999998754311 1236899999874 7
Q ss_pred EEEEcCCCCCcchhhcc---cCccEEEEccccccCCCcccccCHHHHHHHHHHcCCCEEEEeeeCCccCccccccccccc
Q 019221 231 TLYYEPHCVYNQNFLEK---ERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPMKNGDLDSKGFLASIIQSE 307 (344)
Q Consensus 231 ~i~~sGDt~~~~~~~~~---~~~Dl~il~~~g~~~~~~~~h~~~eea~~~~~~l~~k~vip~H~~~f~~~~~~~~~l~~~ 307 (344)
+|||+||++|.+.+.++ .++|++++++++ ..||+++||+++++.++||+++|+||++|.. . .
T Consensus 136 ~i~~~GDt~~~~~~~~~~~~~~~D~~~~~~~~------~~h~~~~ea~~~~~~~~~k~~v~~H~~~~~~-------~--~ 200 (228)
T PRK00685 136 TIYHAGDTGLFSDMKLIGELHKPDVALLPIGD------NFTMGPEDAALAVELIKPKIVIPMHYNTFPL-------I--E 200 (228)
T ss_pred EEEEecCccchhHHHHHHHhhCCCEEEEecCC------ccccCHHHHHHHHHhhCCCEEEEeccCCCcC-------C--c
Confidence 99999999998776554 489999999843 2478999999999999999999999999874 2 4
Q ss_pred CCHHHHHHHHHhcCCCCeeeccCCCCeEEc
Q 019221 308 GTVESFKELLSKELPDAQLLEPTPGEPLEI 337 (344)
Q Consensus 308 ~~~e~~~~~~~~~~~~~~~~~~~~Ge~~~l 337 (344)
...+.+++.+++ .+.++..+++||++++
T Consensus 201 ~~~~~~~~~~~~--~~~~~~~~~~G~~~~~ 228 (228)
T PRK00685 201 QDPEKFKALVEG--LGTKVVILKPGESIEL 228 (228)
T ss_pred CCHHHHHHHHHh--cCCcEEECCCCCEeeC
Confidence 568889888887 4578889999999875
No 5
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=99.95 E-value=2e-27 Score=205.16 Aligned_cols=158 Identities=28% Similarity=0.508 Sum_probs=108.7
Q ss_pred EEEEEeCcEEEEEeCCcEEEEccccCCCCCCCcccccccCCcccCCCCCCCCCCccEEEecCCCCCCCChhhHHHhhhcC
Q 019221 80 KLTYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMS 159 (344)
Q Consensus 80 ~it~lGhss~li~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~L~~~~ 159 (344)
+|||+|||||+|+.+|++||||||.+. .. +. ....++|+|+|||.|+||++..+++.+.
T Consensus 1 ~It~lgha~~~ie~~g~~iliDP~~~~-~~----~~-------------~~~~~~D~IlisH~H~DH~~~~~l~~~~--- 59 (163)
T PF13483_consen 1 KITWLGHASFLIETGGKRILIDPWFSS-VG----YA-------------PPPPKADAILISHSHPDHFDPETLKRLD--- 59 (163)
T ss_dssp EEEEEETTEEEEEETTEEEEES--TTT-------T--------------TSS-B-SEEEESSSSTTT-CCCCCCCHH---
T ss_pred CEEEEEeeEEEEEECCEEEEECCCCCc-cC----cc-------------cccCCCCEEEECCCccccCChhHhhhcc---
Confidence 699999999999999999999998641 21 10 0114899999999999999887766553
Q ss_pred CCceEEEccchHHHHhhcCCceEEeCCCceEEeCcccCCcEEEEEeecCCcCCC--CCCCCCeEEEEeCCCceEEEEcCC
Q 019221 160 PNLKVIATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPP--WQRPENGYLVNSSQGQLTLYYEPH 237 (344)
Q Consensus 160 p~~~v~~~~~~~~~l~~~~~~i~~l~~~~~~~~~~~~~~~~~i~~~p~~~~g~~--~~~~~~g~vi~~~~g~~~i~~sGD 237 (344)
.++..+.++++++++ +++|+.+++.+.... .....++|+|+.+ +.+||+.||
T Consensus 60 -------------------~~~~vv~~~~~~~~~-----~~~i~~v~~~~~~~~~~~~~~~~~~~i~~~--g~~i~~~Gd 113 (163)
T PF13483_consen 60 -------------------RDIHVVAPGGEYRFG-----GFKITAVPAYHDGPGGHPRGENVGYLIEVG--GVTIYHAGD 113 (163)
T ss_dssp -------------------TSSEEE-TTEEEECT-----TEEEEEEEEEE-STGTS-TTCCEEEEEEET--TEEEEE-TT
T ss_pred -------------------cccEEEccceEEEEe-----eeEEEEEeeeccccCCCCcCCeEEEEEEeC--CCEEEEECC
Confidence 234455668889987 899999998753221 1123679999996 589999999
Q ss_pred CCCc---chhhcccCccEEEEccccccCCCcccccCHHHHHHHHHHcCCCEEEEee
Q 019221 238 CVYN---QNFLEKERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPMK 290 (344)
Q Consensus 238 t~~~---~~~~~~~~~Dl~il~~~g~~~~~~~~h~~~eea~~~~~~l~~k~vip~H 290 (344)
++.. ..+.+.+++|+++++++| .+ .|++++|+++++.++||++||+|
T Consensus 114 ~~~~~~~~~~~~~~~vDvl~~p~~g----~~--~~~~~~a~~~~~~l~pk~viP~H 163 (163)
T PF13483_consen 114 TGFPPDDEQLKQLGKVDVLFLPVGG----PF--TMGPEEAAELAERLKPKLVIPMH 163 (163)
T ss_dssp --S---HHHHHHH-S-SEEEEE--T----TT--S--HHHHHHHHHHCT-SEEEEES
T ss_pred CccCCCHHHHhcccCCCEEEecCCC----Cc--ccCHHHHHHHHHHcCCCEEEeCC
Confidence 9874 344555799999999965 33 34999999999999999999999
No 6
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=99.82 E-value=1.3e-19 Score=159.43 Aligned_cols=151 Identities=25% Similarity=0.372 Sum_probs=115.6
Q ss_pred CCCCccEEEecCCCCCC-CChhhHHHhhhcCCCceEEEccchHHHHh--hcC----------CceEEeCCCceEEeCccc
Q 019221 130 DLPQVDCLLITQSLDDH-CHLKTLKPLSKMSPNLKVIATPNAKTLLD--PLF----------QNVTYVEPGQSSEIEGRN 196 (344)
Q Consensus 130 ~lp~iD~VlISH~H~DH-ld~~tl~~L~~~~p~~~v~~~~~~~~~l~--~~~----------~~i~~l~~~~~~~~~~~~ 196 (344)
+++++|+|+|||.|+|| +++.++.......++ ++|+++...+.++ .++ .++.++..++.++++
T Consensus 26 ~~~~id~v~iTH~H~DH~~gl~~l~~~~~~~~~-~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 101 (194)
T PF12706_consen 26 DLPDIDAVFITHSHPDHIAGLPSLIPAWAKHPK-PIYGPPETKEFLREYKFGILDLYPEEDNFDIIEISPGDEFEIG--- 101 (194)
T ss_dssp SSGCEEEEE-SBSSHHHHTTHHHHHHHHHHCTT-EEEECHHHHHHHHHHHHTHHTTCCTTSGEEEEEECTTEEEEET---
T ss_pred ccCCCCEEEECCCCccccCChHHHHHHhhcccc-eEEecHHHHHHHHhhhcccccccccccceeEEEeccCceEEec---
Confidence 55799999999999999 787777777665444 8888888877776 431 357888888889997
Q ss_pred CCcEEEEEeecCCcCCCCCCCCCeEEEEeCCCceEEEEcCCCCCcchhhcccCccEEEEccccccCC-----CcccccCH
Q 019221 197 GSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQNFLEKERSDIIITPVIKQLLP-----KFTLVSGQ 271 (344)
Q Consensus 197 ~~~~~i~~~p~~~~g~~~~~~~~g~vi~~~~g~~~i~~sGDt~~~~~~~~~~~~Dl~il~~~g~~~~-----~~~~h~~~ 271 (344)
+++|+++|+.|.......+. ||+|+.+ +.+|+|+||+.+ .+.++.++|+++++++..+.. .-..|++.
T Consensus 102 --~~~i~~~~~~H~~~~~~~~~-g~~i~~~--~~~i~~~gD~~~--~~~~~~~~D~li~~~~~~~~~~~~~~~~~~h~~~ 174 (194)
T PF12706_consen 102 --DFRITPFPANHGPPSYGGNK-GFVIEPD--GKKIFYSGDTNY--DFEELKNIDLLILECGYIDEEEEPPARGPGHMTL 174 (194)
T ss_dssp --TEEEEEEEEESSSCCEEECC-EEEEEET--TEEEEEETSSSS--CHHHHTTBSEEEEEBCBSSGGHHCHHCCTTSBBH
T ss_pred --eEEEEEEeccccccccccCc-eEEEecC--CcceEEeeccch--hhhhhccCCEEEEeCCCcchhhcccccCCCCCCH
Confidence 89999999987542110001 3999977 589999999999 354556899999998433211 22459999
Q ss_pred HHHHHHHHHcCCCEEEEeee
Q 019221 272 EDAVKLAKLLHAKFIVPMKN 291 (344)
Q Consensus 272 eea~~~~~~l~~k~vip~H~ 291 (344)
++++++++++++|+++++||
T Consensus 175 ~~~~~~~~~~~~~~~il~H~ 194 (194)
T PF12706_consen 175 EEALELAKELKAKKVILIHF 194 (194)
T ss_dssp HHHHHHHHHHTTSEEEEESB
T ss_pred HHHHHHHHHcCCCEEEEECC
Confidence 99999999999999999997
No 7
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=99.81 E-value=2.5e-18 Score=158.45 Aligned_cols=174 Identities=19% Similarity=0.235 Sum_probs=123.0
Q ss_pred CcEEEEEeCCcEEEEccccCCCCCCCcccccccCCcccCCCCCCCCCCccEEEecCCCCCCCChhhHHHhhh-cCCCceE
Q 019221 86 GNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSK-MSPNLKV 164 (344)
Q Consensus 86 hss~li~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~L~~-~~p~~~v 164 (344)
.+|++|+.++..||||| |... + .++ +. ..+||+|||||.|.||+ .++..+.. +.+.+++
T Consensus 37 ~~s~li~~~~~~iLiD~---G~~~-----~----~~~---~~---~~~i~~i~iTH~H~DHi--~gl~~l~~~~~~~i~i 96 (250)
T PRK11244 37 PCSALIEFNGARTLIDA---GLPD-----L----AER---FP---PGSLQQILLTHYHMDHV--QGLFPLRWGVGDPIPV 96 (250)
T ss_pred eeEEEEEECCCEEEEEC---CChH-----H----hhc---CC---cccCCEEEEccCchhhh--ccHHHHHhhcCCceeE
Confidence 46899999999999999 4211 1 011 11 23789999999999996 44544422 1236788
Q ss_pred EEccchHH---HHhhcC-Cce-EEeCCCceEEeCcccCCcEEEEEeecCCcCCCCCCCCCeEEEEeCCCceEEEEcCCCC
Q 019221 165 IATPNAKT---LLDPLF-QNV-TYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCV 239 (344)
Q Consensus 165 ~~~~~~~~---~l~~~~-~~i-~~l~~~~~~~~~~~~~~~~~i~~~p~~~~g~~~~~~~~g~vi~~~~g~~~i~~sGDt~ 239 (344)
|+++.... +++..+ .+. .++++++.++++ +++|+++|..|+.+ ..||+|+.+ +.+|+|+|||+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~I~~~~~~H~~~-----s~g~~i~~~--~~~i~ysgDt~ 164 (250)
T PRK11244 97 YGPPDPEGCDDLFKHPGILDFSHPLEPFEPFDLG-----GLQVTPLPLNHSKL-----TFGYLLETA--HSRVAYLTDTV 164 (250)
T ss_pred EeCCchhhHHHHhcCccccccccccCCCCCeeEC-----CEEEEEEeeCCCcc-----eeEEEEecC--CeEEEEEcCCC
Confidence 87765322 222111 122 458889999997 89999999887532 369999987 47999999998
Q ss_pred Ccc-hhhcc---cCccEEEEccccccCCC---cccccCHHHHHHHHHHcCCCEEEEeeeCC
Q 019221 240 YNQ-NFLEK---ERSDIIITPVIKQLLPK---FTLVSGQEDAVKLAKLLHAKFIVPMKNGD 293 (344)
Q Consensus 240 ~~~-~~~~~---~~~Dl~il~~~g~~~~~---~~~h~~~eea~~~~~~l~~k~vip~H~~~ 293 (344)
+.. .+.+. .++|++++++. |.+. ...|+++++++++++.+++|+++++|++.
T Consensus 165 ~~~~~~~~~~~~~~~Dlli~e~~--~~~~~~~~~~H~~~~~a~~~a~~~~~k~lvltH~~~ 223 (250)
T PRK11244 165 GLPEDTLKFLRNNQPDLLVLDCS--HPPQEDAPRNHNDLTTALAIIEVLRPPRVILTHISH 223 (250)
T ss_pred CCCHHHHHHHhcCCCCEEEEeCc--CCCCCCCCCCCCCHHHHHHHHHhcCCceEEEEcccC
Confidence 753 34332 48999999973 3221 12499999999999999999999999864
No 8
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=99.79 E-value=5.2e-18 Score=160.09 Aligned_cols=211 Identities=19% Similarity=0.170 Sum_probs=142.3
Q ss_pred eCcEEEEEeCCcEEEEccccCCCCCCCcccccccCCcccCCCCCCCCCCccEEEecCCCCCCCChhhHHHhhh------c
Q 019221 85 EGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSK------M 158 (344)
Q Consensus 85 Ghss~li~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~L~~------~ 158 (344)
+++|++|+.++.+||||+ |... . +++..... ++.++|+|||||.|+||+ .++..|.. +
T Consensus 17 ~~~~~~v~~~~~~iLiD~---G~g~--~--------~~l~~~~~-~~~~i~~IfiTH~H~DH~--~Gl~~l~~~~~~~~~ 80 (299)
T TIGR02651 17 NLPSIALKLNGELWLFDC---GEGT--Q--------RQMLRSGI-SPMKIDRIFITHLHGDHI--LGLPGLLSTMSFQGR 80 (299)
T ss_pred CCceEEEEECCeEEEEEC---CHHH--H--------HHHHHcCC-CHHHCcEEEEECCchhhh--cChHHHHHhhccCCC
Confidence 468999999999999999 5322 0 11111111 234789999999999996 44443321 1
Q ss_pred CCCceEEEccchHHHHhhc--------C--CceEEeCCCc-eEEeCcccCCcEEEEEeecCCcCCCCCCCCCeEEEEeCC
Q 019221 159 SPNLKVIATPNAKTLLDPL--------F--QNVTYVEPGQ-SSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQ 227 (344)
Q Consensus 159 ~p~~~v~~~~~~~~~l~~~--------~--~~i~~l~~~~-~~~~~~~~~~~~~i~~~p~~~~g~~~~~~~~g~vi~~~~ 227 (344)
...+++|+++.....++.. . .++.++++++ .+..+ +++|+++|..|+.+ ..||.|+.++
T Consensus 81 ~~~i~Iy~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~H~~~-----~~gy~i~~~~ 150 (299)
T TIGR02651 81 KEPLTIYGPPGIKEFIETSLRVSYTYLNYPIKIHEIEEGGLVFEDD-----GFKVEAFPLDHSIP-----SLGYRFEEKD 150 (299)
T ss_pred CceEEEECCccHHHHHHHHHHHcccCCCceEEEEEccCCCceEecC-----CEEEEEEEcCCCCc-----eEEEEEEECC
Confidence 1246777776665555432 1 2467788887 47776 89999999887432 2578877531
Q ss_pred ------------------------------------------------CceEEEEcCCCCCcchhhcc-cCccEEEEccc
Q 019221 228 ------------------------------------------------GQLTLYYEPHCVYNQNFLEK-ERSDIIITPVI 258 (344)
Q Consensus 228 ------------------------------------------------g~~~i~~sGDt~~~~~~~~~-~~~Dl~il~~~ 258 (344)
.+.+|+|+||+++.+.+.+. .+.|++++++.
T Consensus 151 ~~~~~~~~k~~~~~l~~g~~~~~L~~g~~v~~~~G~~~~~~~~~~~~~~g~~i~y~gDt~~~~~~~~~~~~~dlLi~E~~ 230 (299)
T TIGR02651 151 RPGKFDREKAKELGIPPGPLYGKLKRGETVTLIDGRIIDPEDVLGPPRKGRKIAYTGDTRPCEEVIEFAKNADLLIHEAT 230 (299)
T ss_pred CCCCcCHHHHHHCCCCcchhHHHhhCCCeEEeCCCeEEeHHHcccCCcCCcEEEEecCCCChHHHHHHHcCCCEEEEECC
Confidence 13589999999998877665 48999999973
Q ss_pred cccCC---Cc---ccccCHHHHHHHHHHcCCCEEEEeeeCCccCcccccccccccCCHHHHHHHHHhcCCCCeeeccCCC
Q 019221 259 KQLLP---KF---TLVSGQEDAVKLAKLLHAKFIVPMKNGDLDSKGFLASIIQSEGTVESFKELLSKELPDAQLLEPTPG 332 (344)
Q Consensus 259 g~~~~---~~---~~h~~~eea~~~~~~l~~k~vip~H~~~f~~~~~~~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G 332 (344)
|.. .+ ..|++++||+++++..++|+++.+|++.-. .. .+.+.+.+++... .+.....|
T Consensus 231 --~~~~~~~~~~~~~H~t~~~a~~~~~~~~~k~lvltH~s~~~-----------~~-~~~~~~~~~~~~~--~~~~a~dg 294 (299)
T TIGR02651 231 --FLDEDKKLAKEYGHSTAAQAAEIAKEANVKRLILTHISPRY-----------SD-EEELLEEAKKIFP--NTYIAEDF 294 (299)
T ss_pred --CCchhHHHHhhcCCCCHHHHHHHHHHcCCCEEEEEeccccc-----------CC-hHHHHHHHHHhCC--CcEEccCc
Confidence 332 11 249999999999999999999999997521 11 3444444444333 35566788
Q ss_pred CeEEc
Q 019221 333 EPLEI 337 (344)
Q Consensus 333 e~~~l 337 (344)
.++++
T Consensus 295 ~~~~~ 299 (299)
T TIGR02651 295 MEIEI 299 (299)
T ss_pred cEeeC
Confidence 88764
No 9
>PRK02113 putative hydrolase; Provisional
Probab=99.77 E-value=2.9e-17 Score=151.45 Aligned_cols=174 Identities=18% Similarity=0.225 Sum_probs=124.1
Q ss_pred CcEEEEEeCCcEEEEccccCCCCCCCcccccccCCcccCCCCCCCCCCccEEEecCCCCCCCC-hhhHHHhhhcCCCceE
Q 019221 86 GNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCH-LKTLKPLSKMSPNLKV 164 (344)
Q Consensus 86 hss~li~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld-~~tl~~L~~~~p~~~v 164 (344)
.+|++|+.+|.+||||+ |... . +++.. .++.++|+|||||.|+||+. +..+..+... .++++
T Consensus 35 ~~s~li~~~~~~iLiD~---G~g~---~-------~~l~~---~~~~~id~I~lTH~H~DH~~gl~~l~~~~~~-~~~~i 97 (252)
T PRK02113 35 RTSALVETEGARILIDC---GPDF---R-------EQMLR---LPFGKIDAVLITHEHYDHVGGLDDLRPFCRF-GEVPI 97 (252)
T ss_pred eeEEEEEECCeEEEEEC---CchH---H-------HHHHh---cCccccCEEEECCCChhhhCCHHHHHHhccC-CCceE
Confidence 47899999999999999 5321 0 11111 13458999999999999962 3334333222 36889
Q ss_pred EEccchHHHHhhcC--------------CceEEeCCCceEEeCcccCCcEEEEEeecCCcCCCCCCCCCeEEEEeCCCce
Q 019221 165 IATPNAKTLLDPLF--------------QNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQL 230 (344)
Q Consensus 165 ~~~~~~~~~l~~~~--------------~~i~~l~~~~~~~~~~~~~~~~~i~~~p~~~~g~~~~~~~~g~vi~~~~g~~ 230 (344)
|+++.....+++.. .+++++++++.++++ +++|++++..|... ...||.+ +
T Consensus 98 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-----~~~i~~~~~~H~~~----~~~gy~i--~---- 162 (252)
T PRK02113 98 YAEQYVAERLRSRMPYCFVEHSYPGVPNIPLREIEPDRPFLVN-----HTEVTPLRVMHGKL----PILGYRI--G---- 162 (252)
T ss_pred EECHHHHHHHHhhCCeeeccCCCCCCcceeeEEcCCCCCEEEC-----CeEEEEEEecCCCc----cEEEEEe--C----
Confidence 98887666554320 247888899999997 89999998877421 1358888 2
Q ss_pred EEEEcCCCCCc-chhhcc-cCccEEEEccccccCCCcccccCHHHHHHHHHHcCCCEEEEeeeCC
Q 019221 231 TLYYEPHCVYN-QNFLEK-ERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPMKNGD 293 (344)
Q Consensus 231 ~i~~sGDt~~~-~~~~~~-~~~Dl~il~~~g~~~~~~~~h~~~eea~~~~~~l~~k~vip~H~~~ 293 (344)
++.|+||+.+. +...+. .+.|++++++. +......|+++++++++++++++|+++.+|++.
T Consensus 163 ~i~y~~Dt~~~~~~~~~~~~~~DlLi~e~~--~~~~~~~H~t~~~a~~~~~~~~~k~l~l~H~s~ 225 (252)
T PRK02113 163 KMAYITDMLTMPEEEYEQLQGIDVLVMNAL--RIAPHPTHQSLEEALENIKRIGAKETYLIHMSH 225 (252)
T ss_pred CEEEccCCCCCCHHHHHHhcCCCEEEEhhh--cCCCCCCcCCHHHHHHHHHHhCCCEEEEEcccc
Confidence 79999999864 333332 48999999862 222223599999999999999999999999864
No 10
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=99.77 E-value=3.6e-17 Score=149.64 Aligned_cols=174 Identities=18% Similarity=0.185 Sum_probs=121.7
Q ss_pred CcEEEEEeCCcEEEEccccCCCCCCCcccccccCCcccCCCCCCCCCCccEEEecCCCCCCCChhhHHHhhhc-CCCceE
Q 019221 86 GNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKM-SPNLKV 164 (344)
Q Consensus 86 hss~li~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~L~~~-~p~~~v 164 (344)
.+|++|+.+|.+||||| |... + .+. +. ..+||+|||||.|+||+ ..+..+... ..++++
T Consensus 27 ~~s~~i~~~~~~iliD~---G~~~-----~----~~~---~~---~~~id~i~iTH~H~DHi--~gl~~l~~~~~~~~~v 86 (238)
T TIGR03307 27 PCSAVIEFNGARTLIDA---GLTD-----L----AER---FP---PGSLQAILLTHYHMDHV--QGLFPLRWGVGEPIPV 86 (238)
T ss_pred ceEEEEEECCcEEEEEC---CChh-----H----hhc---cC---ccCCCEEEEecCchhhh--cchHHHHHhcCCceeE
Confidence 35788999999999999 4111 1 011 11 23789999999999996 334333221 136788
Q ss_pred EEccchHH---HHhhcC-Cce-EEeCCCceEEeCcccCCcEEEEEeecCCcCCCCCCCCCeEEEEeCCCceEEEEcCCCC
Q 019221 165 IATPNAKT---LLDPLF-QNV-TYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCV 239 (344)
Q Consensus 165 ~~~~~~~~---~l~~~~-~~i-~~l~~~~~~~~~~~~~~~~~i~~~p~~~~g~~~~~~~~g~vi~~~~g~~~i~~sGDt~ 239 (344)
|+++.... +++..+ .+. .++.+++.++++ +++|+++|..|... ..||+|+.+ +.+++|+||++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~H~~~-----~~g~~i~~~--~~~i~y~gDt~ 154 (238)
T TIGR03307 87 YGPPDEEGCDDLFKHPGILDFSKPLEAFEPFDLG-----GLRVTPLPLVHSKL-----TFGYLLETD--GQRVAYLTDTA 154 (238)
T ss_pred EeCchHhhHHHHhcCcccccccccccCCceEEEC-----CEEEEEEecCCCCc-----ceEEEEecC--CcEEEEEecCC
Confidence 87765432 222111 122 347788899997 89999999887532 369999876 47999999998
Q ss_pred Ccc-hhhcc---cCccEEEEccccccCC---CcccccCHHHHHHHHHHcCCCEEEEeeeCC
Q 019221 240 YNQ-NFLEK---ERSDIIITPVIKQLLP---KFTLVSGQEDAVKLAKLLHAKFIVPMKNGD 293 (344)
Q Consensus 240 ~~~-~~~~~---~~~Dl~il~~~g~~~~---~~~~h~~~eea~~~~~~l~~k~vip~H~~~ 293 (344)
+.. .+.+. .++|+++++++ |.+ ....|+++++++++++.+++++++.+|++.
T Consensus 155 ~~~~~~~~~~~~~~~D~li~e~~--~~~~~~~~~~H~~~~~~~~~~~~~~~~~lil~H~~~ 213 (238)
T TIGR03307 155 GLPPDTEAFLKNHPLDVLILDCS--HPPQSDAPRNHNDLTRALAINEQLRPKQVILTHISH 213 (238)
T ss_pred CCCHHHHHHHhcCCCCEEEEeCC--cCccccCCCCcCCHHHHHHHHHHcCCCEEEEEeccc
Confidence 653 33332 37999999973 322 113599999999999999999999999964
No 11
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=99.75 E-value=7.5e-17 Score=152.79 Aligned_cols=213 Identities=13% Similarity=0.057 Sum_probs=140.4
Q ss_pred eCcEEEEEeC----CcEEEEccccCCCCCCCcccccccCCcccCCCCCCCCCCccEEEecCCCCCCCChhhHHHhh----
Q 019221 85 EGNSWLWDLD----GVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLS---- 156 (344)
Q Consensus 85 Ghss~li~~~----g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~L~---- 156 (344)
+.+|++|+.+ +.+||||+ |.... +++....+ ++.+||+|||||.|+||+ .++..|.
T Consensus 16 ~~s~~lv~~~~~~~~~~iLiD~---G~g~~----------~~l~~~~i-~~~~id~IfiTH~H~DHi--~Gl~~ll~~~~ 79 (303)
T TIGR02649 16 NVTAILLNLQHPTQSGLWLFDC---GEGTQ----------HQLLHTAF-NPGKLDKIFISHLHGDHL--FGLPGLLCSRS 79 (303)
T ss_pred CccEEEEEccCCCCCCEEEEEC---CccHH----------HHHHHhCC-CHHHCcEEEEeCCChhhc--CCHHHHHHHHH
Confidence 4689999974 37899999 53321 11111111 234899999999999996 4444332
Q ss_pred --hcCCCceEEEccchHHHHhhc---------C-CceEEeCCCceEEeCcccCCcEEEEEeecCCcCCCCCCCCCeEEEE
Q 019221 157 --KMSPNLKVIATPNAKTLLDPL---------F-QNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVN 224 (344)
Q Consensus 157 --~~~p~~~v~~~~~~~~~l~~~---------~-~~i~~l~~~~~~~~~~~~~~~~~i~~~p~~~~g~~~~~~~~g~vi~ 224 (344)
.+...+++|+++.....++.. + .++++++.++.+..+ +++|+++|..|... ..||.|+
T Consensus 80 ~~~~~~~l~Iygp~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~v~~~~~~H~~~-----~~gy~i~ 149 (303)
T TIGR02649 80 MSGIIQPLTIYGPQGIREFVETALRISGSWTDYPLEIVEIGAGEILDDG-----LRKVTAYPLEHPLE-----CYGYRIE 149 (303)
T ss_pred hcCCCCCeEEEechhHHHHHHHHHHhcccccCCceEEEEcCCCceEecC-----CeEEEEEEccCccc-----eEEEEEe
Confidence 111257788777665555432 1 245777777777665 79999998876432 3578876
Q ss_pred eCC------------------------------------------------CceEEEEcCCCCCcchhhcc-cCccEEEE
Q 019221 225 SSQ------------------------------------------------GQLTLYYEPHCVYNQNFLEK-ERSDIIIT 255 (344)
Q Consensus 225 ~~~------------------------------------------------g~~~i~~sGDt~~~~~~~~~-~~~Dl~il 255 (344)
..+ .+.+|.|+|||++.+.+.+. .+.|++|+
T Consensus 150 ~~~~~g~~~~~kl~~lgi~~g~~~~~L~~g~~v~~~dg~~~~~~~~~~~~~~g~~i~y~gDt~~~~~~~~~~~~adlLi~ 229 (303)
T TIGR02649 150 EHDKPGALNAQALKAAGVPPGPLFQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGPCDAALDLAKGVDVMVH 229 (303)
T ss_pred ccCCcCCCCHHHHHHCCCCCChHHHHhcCCCeEEeCCCcEEcHHHeeCCCCCCcEEEEecCCCChHHHHHHhcCCCEEEE
Confidence 521 14799999999998776664 49999999
Q ss_pred ccccccCCC------cccccCHHHHHHHHHHcCCCEEEEeeeCCccCcccccccccccCCHHHHHHHHHhcCCCCeeecc
Q 019221 256 PVIKQLLPK------FTLVSGQEDAVKLAKLLHAKFIVPMKNGDLDSKGFLASIIQSEGTVESFKELLSKELPDAQLLEP 329 (344)
Q Consensus 256 ~~~g~~~~~------~~~h~~~eea~~~~~~l~~k~vip~H~~~f~~~~~~~~~l~~~~~~e~~~~~~~~~~~~~~~~~~ 329 (344)
++. |... -..|++.+||+++++.+++|+++.+|++.-.. ....+.+.+..++...+ ....
T Consensus 230 Eat--~~~~~~~~a~~~~H~t~~~a~~~a~~~~~k~lvL~H~s~~y~----------~~~~~~~~~~~~~~~~~--~~~a 295 (303)
T TIGR02649 230 EAT--LDITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRYD----------DKGCQHLLRECRSIFPA--TELA 295 (303)
T ss_pred ecc--CChhhHHHHhhcCCCCHHHHHHHHHHcCCCEEEEEEeccccC----------CccHHHHHHHHHHHCCC--CEec
Confidence 973 4321 12399999999999999999999999975211 12234444444443333 3566
Q ss_pred CCCCeEEc
Q 019221 330 TPGEPLEI 337 (344)
Q Consensus 330 ~~Ge~~~l 337 (344)
+.|+++.+
T Consensus 296 ~d~~~~~~ 303 (303)
T TIGR02649 296 NDFTVFNV 303 (303)
T ss_pred ccccEEeC
Confidence 78888764
No 12
>PRK00055 ribonuclease Z; Reviewed
Probab=99.75 E-value=3.8e-17 Score=151.47 Aligned_cols=222 Identities=17% Similarity=0.157 Sum_probs=133.2
Q ss_pred eEEEEEe-----------CcEEEEEeCCcEEEEccccCCCCCCCcccccccCCcccC--CCCCCCCCCccEEEecCCCCC
Q 019221 79 FKLTYLE-----------GNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLK--SFQLSDLPQVDCLLITQSLDD 145 (344)
Q Consensus 79 ~~it~lG-----------hss~li~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~--~~~~~~lp~iD~VlISH~H~D 145 (344)
|+|+.|| .+|++|+.++.+||||+ |... . +++. .+ ++.++|+|||||.|.|
T Consensus 2 m~i~~LGsg~~~~~~~r~~~~~li~~~~~~iLiD~---G~g~--~--------~~l~~~~~---~~~~i~~i~lTH~H~D 65 (270)
T PRK00055 2 MELTFLGTGSGVPTPTRNVSSILLRLGGELFLFDC---GEGT--Q--------RQLLKTGI---KPRKIDKIFITHLHGD 65 (270)
T ss_pred eEEEEEecCCCCCcCCCCCCEEEEEECCcEEEEEC---CHHH--H--------HHHHHcCC---CHHHCCEEEEeCCCch
Confidence 6788887 68999999999999999 5322 0 1111 12 2347899999999999
Q ss_pred CCChhhHHHhhh------cCCCceEEEccchHHHHhhc---CC----ceEEeCCCceEE--------eC-c----ccCCc
Q 019221 146 HCHLKTLKPLSK------MSPNLKVIATPNAKTLLDPL---FQ----NVTYVEPGQSSE--------IE-G----RNGSK 199 (344)
Q Consensus 146 Hld~~tl~~L~~------~~p~~~v~~~~~~~~~l~~~---~~----~i~~l~~~~~~~--------~~-~----~~~~~ 199 (344)
|+ .++..|.. +...+++|+++.....++.. .. .+.+-+....+. +. + ....+
T Consensus 66 Hi--~Gl~~l~~~~~~~~~~~~l~iy~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 143 (270)
T PRK00055 66 HI--FGLPGLLSTRSLSGRTEPLTIYGPKGIKEFVETLLRASGSLGYRIAEKDKPGKLDAEKLKALGVPPGPLFGKLKRG 143 (270)
T ss_pred hh--CcHHHHHHHhhhcCCCceEEEECCccHHHHHHHHHHHhhceeEEEEEcCCCCCCCHHHHHHCCCCCCchHHHhhCC
Confidence 95 55544431 11256788766655544332 00 111100000000 00 0 00001
Q ss_pred EEEEEeecCCcCCCCCCCCCeEEEEeCCCceEEEEcCCCCCcchhhcc-cCccEEEEccccccCCC------cccccCHH
Q 019221 200 LRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQNFLEK-ERSDIIITPVIKQLLPK------FTLVSGQE 272 (344)
Q Consensus 200 ~~i~~~p~~~~g~~~~~~~~g~vi~~~~g~~~i~~sGDt~~~~~~~~~-~~~Dl~il~~~g~~~~~------~~~h~~~e 272 (344)
.++......... ...+|.++.+ +.+|+|+||+++.+.+.+. .++|++++++. |... ...|++++
T Consensus 144 ~~~~~~~~~~i~-----~~~~~~~~~~--g~~~~y~~Dt~~~~~~~~~~~~~d~li~E~~--~~~~~~~~~~~~~H~~~~ 214 (270)
T PRK00055 144 EDVTLEDGRIIN-----PADVLGPPRK--GRKVAYCGDTRPCEALVELAKGADLLVHEAT--FGDEDEELAKEYGHSTAR 214 (270)
T ss_pred CeEEeCCCcEEe-----HHHeeccCCC--CcEEEEeCCCCCcHHHHHHhCCCCEEEEecc--CCcchhhHHhhcCCCCHH
Confidence 111110000000 1246667665 4799999999998877654 48999999973 3321 12499999
Q ss_pred HHHHHHHHcCCCEEEEeeeCCccCcccccccccccCCHHHHHHHHHhcCCCCeeeccCCCCeEEcCCC
Q 019221 273 DAVKLAKLLHAKFIVPMKNGDLDSKGFLASIIQSEGTVESFKELLSKELPDAQLLEPTPGEPLEIPAP 340 (344)
Q Consensus 273 ea~~~~~~l~~k~vip~H~~~f~~~~~~~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~Ge~~~l~~~ 340 (344)
+++++++++++|+++++|++.-. ....+.+.+.+++... .+..+..|++++|+..
T Consensus 215 ~a~~~~~~~~~~~~vl~H~~~~~-----------~~~~~~~~~~~~~~~~--~v~~a~Dg~~i~l~~~ 269 (270)
T PRK00055 215 QAAEIAKEAGVKRLILTHFSPRY-----------TGDPEELLKEAREIFP--NTELAEDLMRVEVPFR 269 (270)
T ss_pred HHHHHHHHcCCCEEEEEeecccc-----------CCCHHHHHHHHHHHcC--CcEEccCCcEEEecCC
Confidence 99999999999999999997521 1145566666554332 5567789999998543
No 13
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=99.64 E-value=2e-14 Score=136.06 Aligned_cols=191 Identities=16% Similarity=0.135 Sum_probs=121.9
Q ss_pred CcEEEEEeCCc-EEEEccccCCCCCCCcccccccCCcccCCCCCC---CCCCccEEEecCCCCCCCChhhHHHhhhcCCC
Q 019221 86 GNSWLWDLDGV-KVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLS---DLPQVDCLLITQSLDDHCHLKTLKPLSKMSPN 161 (344)
Q Consensus 86 hss~li~~~g~-~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~---~lp~iD~VlISH~H~DHld~~tl~~L~~~~p~ 161 (344)
.+|++|+.+|. +||||+ |.... .. + .+...+.+. .+.++|+|||||.|+||+ ..+..|.... .
T Consensus 39 ~ss~li~~~g~~~iLiD~---G~g~~-~q-l-----~~~~~~~~~~g~~~~~ldav~lTH~H~DHi--~Gl~~l~~~~-~ 105 (302)
T PRK05184 39 QSSIAVSADGEDWVLLNA---SPDIR-QQ-I-----QATPALQPARGLRDTPIAAVVLTDGQIDHT--TGLLTLREGQ-P 105 (302)
T ss_pred ccEEEEEcCCCEEEEEEC---ChhHH-HH-H-----HhchhcCccccCCcccccEEEEeCCchhhh--hChHhhccCC-C
Confidence 57899987764 699999 63321 00 0 011011111 234799999999999994 6676665443 7
Q ss_pred ceEEEccchHHHHhhc---C--------CceEEeCCCceEEeCcccCCcEEEEEeecCCcCCCC-------C-CCCCeEE
Q 019221 162 LKVIATPNAKTLLDPL---F--------QNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPW-------Q-RPENGYL 222 (344)
Q Consensus 162 ~~v~~~~~~~~~l~~~---~--------~~i~~l~~~~~~~~~~~~~~~~~i~~~p~~~~g~~~-------~-~~~~g~v 222 (344)
++||.++.....+++. + .+++++..++.++++. .++++|+++|..|.-+.| + ....||.
T Consensus 106 l~Vyg~~~~~~~l~~~~~~f~~~~~~~~~~~~~i~~~~~~~i~~--~~~~~Vt~~~v~H~~~~~~~~~~~~h~~~~~gyr 183 (302)
T PRK05184 106 FPVYATPAVLEDLSTGFPIFNVLDHYGGVQRRPIALDGPFAVPG--LPGLRFTAFPVPSKAPPYSPHRSDPEPGDNIGLR 183 (302)
T ss_pred eEEEeCHHHHHHHHhcCCcccccccccceeeEEecCCCceEecC--CCCcEEEEEEcCCCCCcccccccCCCCCCeEEEE
Confidence 8899888777666543 1 1346677777777730 126999999986542111 1 1246999
Q ss_pred EE-eCCCceEEEEcCCC-CCcchhhcc-cCccEEEEccccccCC-------------CcccccCH---HHHHHHHHHcCC
Q 019221 223 VN-SSQGQLTLYYEPHC-VYNQNFLEK-ERSDIIITPVIKQLLP-------------KFTLVSGQ---EDAVKLAKLLHA 283 (344)
Q Consensus 223 i~-~~~g~~~i~~sGDt-~~~~~~~~~-~~~Dl~il~~~g~~~~-------------~~~~h~~~---eea~~~~~~l~~ 283 (344)
|+ ..+ +++++|++|+ .+.+.+.+. .+.|++++++. .|.. ....|++. .++++.+...++
T Consensus 184 i~~~~~-g~~~~y~tD~~~~~~~~~~~~~gaDlli~da~-~~~~~~~~~~g~~~~~~~~~~H~~~~~~~~~l~~~~~~~~ 261 (302)
T PRK05184 184 IEDRAT-GKRLFYAPGLAEVTDALRARLAGADCVLFDGT-LWTDDEMIRAGVGTKTGRRMGHLPQSGPGGMIAALARLPI 261 (302)
T ss_pred EEecCC-CcEEEEECCCCCCCHHHHHHHhcCCEEEEeCC-CCcCHHHHhcccCccccccCCCCCCCChHHHHHHhhcCCC
Confidence 96 222 4788888655 666665553 48999999873 1221 11237774 456777777889
Q ss_pred CEEEEeeeCC
Q 019221 284 KFIVPMKNGD 293 (344)
Q Consensus 284 k~vip~H~~~ 293 (344)
|+++.+|...
T Consensus 262 k~l~ltHl~h 271 (302)
T PRK05184 262 ARKILIHINN 271 (302)
T ss_pred CcEEEEEcCC
Confidence 9999999873
No 14
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=99.58 E-value=9.4e-14 Score=130.79 Aligned_cols=95 Identities=14% Similarity=0.106 Sum_probs=72.3
Q ss_pred ceEEEEcCCCCCcchhhccc-CccEEEEccccccCC---C---cccccCHHHHHHHHHHcCCCEEEEeeeCCccCccccc
Q 019221 229 QLTLYYEPHCVYNQNFLEKE-RSDIIITPVIKQLLP---K---FTLVSGQEDAVKLAKLLHAKFIVPMKNGDLDSKGFLA 301 (344)
Q Consensus 229 ~~~i~~sGDt~~~~~~~~~~-~~Dl~il~~~g~~~~---~---~~~h~~~eea~~~~~~l~~k~vip~H~~~f~~~~~~~ 301 (344)
+.+|.|+|||.++..+.+.. +.|+++.++. +.+ . ...|++.+||++.+++.++|.++.+|++...
T Consensus 190 G~~v~ysGDT~p~~~~~~~a~~aDlLiHEat--~~~~~~~~a~~~~HsT~~eAa~iA~~A~vk~LiLtH~s~ry------ 261 (292)
T COG1234 190 GKSVVYSGDTRPCDELIDLAKGADLLIHEAT--FEDDLEDLANEGGHSTAEEAAEIAKEAGVKKLILTHFSPRY------ 261 (292)
T ss_pred CcEEEEECCCCCCHHHHHHhcCCCEEEEecc--CCchhhhHHhhcCCCCHHHHHHHHHHcCCCeEEEEeecccc------
Confidence 47999999999999888764 9999999973 322 1 1129999999999999999999999998632
Q ss_pred ccccccCCHHHHHHHHHhcCCCCeeeccCCCCeEEc
Q 019221 302 SIIQSEGTVESFKELLSKELPDAQLLEPTPGEPLEI 337 (344)
Q Consensus 302 ~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~Ge~~~l 337 (344)
....+.+.+..++.-++ ++..++.|+++++
T Consensus 262 -----~~~~~~~~~ea~~~f~~-~~~~a~D~~~~~v 291 (292)
T COG1234 262 -----PKDDEELLKEARAIFPG-ETIVARDGLVFEV 291 (292)
T ss_pred -----cchHHHHHHHHHHhCCC-ceEEeccceEEec
Confidence 12455555555554444 6777789988876
No 15
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=99.55 E-value=3.2e-13 Score=127.73 Aligned_cols=194 Identities=14% Similarity=0.081 Sum_probs=121.2
Q ss_pred CcEEEEEeC-CcEEEEccccCCCCCCCcccccccCCcccCCCC---CCCCCCccEEEecCCCCCCCChhhHHHhhhcCCC
Q 019221 86 GNSWLWDLD-GVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQ---LSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPN 161 (344)
Q Consensus 86 hss~li~~~-g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~---~~~lp~iD~VlISH~H~DHld~~tl~~L~~~~p~ 161 (344)
.+|++|+.+ +.+||||+ | +++ .... .++..+. --++.+||+|||||.|+|| +..|..|.++. .
T Consensus 38 rss~ll~~~g~~~iLID~---G-pd~--r~ql----~~~~~~~~~~gl~~~~IdaI~lTH~H~DH--i~GL~~L~~~~-~ 104 (302)
T TIGR02108 38 QSSIAVSADGERWVLLNA---S-PDI--RQQI----QATPALHPQRGLRHTPIAGVVLTDGEIDH--TTGLLTLREGQ-P 104 (302)
T ss_pred ccEEEEEeCCCEEEEEEC---C-HHH--HHHH----HhCcccccccCCCcccCCEEEEeCCCcch--hhCHHHHcCCC-C
Confidence 467889764 46899999 4 221 0000 0111110 0123479999999999999 46677776554 7
Q ss_pred ceEEEccchHHHHhhc--CC-------ceEEeCCCceEEeCcccCCcEEEEEeecCCc------CC---CCCCCCCeEEE
Q 019221 162 LKVIATPNAKTLLDPL--FQ-------NVTYVEPGQSSEIEGRNGSKLRVKATAGPVL------GP---PWQRPENGYLV 223 (344)
Q Consensus 162 ~~v~~~~~~~~~l~~~--~~-------~i~~l~~~~~~~~~~~~~~~~~i~~~p~~~~------g~---~~~~~~~g~vi 223 (344)
++||+++.....|++. +. +...+..++.+.++....++++|+++|..|. +| .-.....||.|
T Consensus 105 lpVya~~~t~~~L~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~I~~f~v~h~~~~~~~H~~~d~~~~~~~Gy~i 184 (302)
T TIGR02108 105 FTLYATEMVLQDLSDNPIFNVLDHWNVRRQPIALNEKFEFRIVARPGLEFTPFAVPGKAPLYSEHRAGDPHPGDTLGLKI 184 (302)
T ss_pred ceEEECHHHHHHHHhCCCccccchhhccceEecCCCcEEecccccCCEEEEEEEcCCCCCccccccccCCCCCCcEEEEE
Confidence 9999999988766531 11 1245566667766410012599999998744 21 10013469999
Q ss_pred EeCCCceEEEEcCCCCCc-chhhcc-cCccEEEEccccccCC-------------CcccccCHH---HHHHHHHHcCCCE
Q 019221 224 NSSQGQLTLYYEPHCVYN-QNFLEK-ERSDIIITPVIKQLLP-------------KFTLVSGQE---DAVKLAKLLHAKF 285 (344)
Q Consensus 224 ~~~~g~~~i~~sGDt~~~-~~~~~~-~~~Dl~il~~~g~~~~-------------~~~~h~~~e---ea~~~~~~l~~k~ 285 (344)
+.+..++++.|++|+++. +...+. .+.|++++++. -|.. ...-|++.+ ++++.+...++++
T Consensus 185 ~~~~~g~~~~y~tD~g~~~~~~~~~l~~~d~liida~-~~~d~e~l~~g~ypri~~~~gHls~~~~~~al~~~~~~~~~~ 263 (302)
T TIGR02108 185 EDGTTGKRLFYIPGCAEITDDLKARMAGADLVFFDGT-LWRDDEMIRAGVGTKTGRRMGHVSMSGEGGSLAVLADLEIAR 263 (302)
T ss_pred EeCCCCcEEEEECCCCCCCHHHHHHHhCCCEEEEeCC-CCCcHHHHhcCCCCCcCCCCCCCCccchHHHHHHhhcCCCCc
Confidence 875212799999999854 344443 47899999973 1221 111266655 6666666679999
Q ss_pred EEEeeeCC
Q 019221 286 IVPMKNGD 293 (344)
Q Consensus 286 vip~H~~~ 293 (344)
++.+|.+.
T Consensus 264 ~~l~Hl~h 271 (302)
T TIGR02108 264 KVLIHINN 271 (302)
T ss_pred EEEEecCC
Confidence 99999876
No 16
>PRK02126 ribonuclease Z; Provisional
Probab=99.54 E-value=4.1e-13 Score=128.67 Aligned_cols=180 Identities=16% Similarity=0.201 Sum_probs=118.4
Q ss_pred EEEeCcEEEEEe--CCcEEEEccccCCCCCCCcccccccCCcccCCCCCCCCCCccEEEecCCCCCCCChhhHHHhhhc-
Q 019221 82 TYLEGNSWLWDL--DGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKM- 158 (344)
Q Consensus 82 t~lGhss~li~~--~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~L~~~- 158 (344)
.-+..+|++|.. +|.++|||| |. . +++ ...++.+||+|||||.|+||+ ..+..|...
T Consensus 12 g~~~dn~~~l~~~~~~~~iLiD~---G~-~-----------~~l---~~~~~~~i~~I~iTH~H~DHi--~Gl~~l~~~~ 71 (334)
T PRK02126 12 GPFDDPGLYVDFLFERRALLFDL---GD-L-----------HHL---PPRELLRISHIFVSHTHMDHF--IGFDRLLRHC 71 (334)
T ss_pred CCCCCcEEEEEECCCCeEEEEcC---CC-H-----------HHH---hhcCCCccCEEEEcCCChhHh--CcHHHHHHHh
Confidence 346778999986 478999999 53 1 111 112456899999999999996 444444322
Q ss_pred ---CCCceEEEccchHHHHhhcC--------------CceEEeC--C--------------------------CceEEeC
Q 019221 159 ---SPNLKVIATPNAKTLLDPLF--------------QNVTYVE--P--------------------------GQSSEIE 193 (344)
Q Consensus 159 ---~p~~~v~~~~~~~~~l~~~~--------------~~i~~l~--~--------------------------~~~~~~~ 193 (344)
.+.+++|+++.....++... ..+...+ . +..++.
T Consensus 72 ~~r~~~l~iygp~~~~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 150 (334)
T PRK02126 72 LGRPRRLRLFGPPGFADQVEHKLAGYTWNLVENYPTTFRVHEVELHDGRIRRALFSCRRAFAREAEEELSLPDGVLLDE- 150 (334)
T ss_pred ccCCCCeEEEECHHHHHHHHHHhccccccCcccCCCceEEEEEEccCccceeeeecccccccccccccccCCCCeEEeC-
Confidence 23578888877766443321 1222221 1 111222
Q ss_pred cccCCcEEEEEeecCCcCCCCCCCCCeEEEEeC-------------------------------------------C---
Q 019221 194 GRNGSKLRVKATAGPVLGPPWQRPENGYLVNSS-------------------------------------------Q--- 227 (344)
Q Consensus 194 ~~~~~~~~i~~~p~~~~g~~~~~~~~g~vi~~~-------------------------------------------~--- 227 (344)
++++|+++|..|.-+. .||.|+.+ +
T Consensus 151 ----~~~~V~a~~~~H~vp~-----~gy~~~e~~~~~~~~ek~~~~gi~~g~~~~~Lk~~~~~~~~~~~~v~~~~~~g~~ 221 (334)
T PRK02126 151 ----PWFRVRAAFLDHGIPC-----LAFALEEKAHINIDKNRLAELGLPPGPWLRELKHAVLRGEPDDTPIRVLWRDGGG 221 (334)
T ss_pred ----CCEEEEEEEccCCCce-----eEEEEEecCCcCcCHHHHHHcCCCCChHHHHHHhhhhccCCCCceEEeeccCCCc
Confidence 4899999998774321 35555421 0
Q ss_pred -------------------CceEEEEcCCCCCcch----hhcc-cCccEEEEccccccCCC------cccccCHHHHHHH
Q 019221 228 -------------------GQLTLYYEPHCVYNQN----FLEK-ERSDIIITPVIKQLLPK------FTLVSGQEDAVKL 277 (344)
Q Consensus 228 -------------------g~~~i~~sGDt~~~~~----~~~~-~~~Dl~il~~~g~~~~~------~~~h~~~eea~~~ 277 (344)
.+.+|.|+|||++.+. +.+. .+.|++|+++. |... -..|+++++++++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~g~~v~y~gDT~~~~~~~~~l~~~a~~aDlLI~Eat--~~~~~~~~a~~~gH~t~~~a~~l 299 (334)
T PRK02126 222 EHERVRPLGELKERVLRIEPGQKIGYVTDIGYTEENLARIVELAAGVDLLFIEAV--FLDEDAEKARRKNHLTARQAGRL 299 (334)
T ss_pred cceeEecHHHHHHHhccCCCCCEEEEECCCCCCcccHHHHHHHHcCCCEEEEEcc--cChHHhhhcccCCCCCHHHHHHH
Confidence 1469999999999864 3442 48999999973 3321 1249999999999
Q ss_pred HHHcCCCEEEEeeeCC
Q 019221 278 AKLLHAKFIVPMKNGD 293 (344)
Q Consensus 278 ~~~l~~k~vip~H~~~ 293 (344)
++..+++.++.+|++.
T Consensus 300 A~~a~vk~LvLtH~sp 315 (334)
T PRK02126 300 AREAGVKRLLPFHFSP 315 (334)
T ss_pred HHHcCCCEEEEEecCc
Confidence 9999999999999875
No 17
>PRK04286 hypothetical protein; Provisional
Probab=99.50 E-value=3.4e-12 Score=120.69 Aligned_cols=217 Identities=15% Similarity=0.169 Sum_probs=115.7
Q ss_pred CcEEEEEeCCcEEEEccccCC-CC--CC-CcccccccCCcccC--CCC-CCCCCCccEEEecCCCCCCCChhhHHHh---
Q 019221 86 GNSWLWDLDGVKVLVDPILVG-NL--DF-GIPWLFDAGKKFLK--SFQ-LSDLPQVDCLLITQSLDDHCHLKTLKPL--- 155 (344)
Q Consensus 86 hss~li~~~g~~ILiDP~~~g-~~--s~-p~~~~~~~~~~~~~--~~~-~~~lp~iD~VlISH~H~DHld~~tl~~L--- 155 (344)
+||++|+.++.+|||||+.+. .. .+ |.|.. .+.+. ... .+.+.+||+|||||.|+||++--.....
T Consensus 15 ~~~~~I~~~~~~iLID~G~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~id~IliTH~H~DHi~g~~~~~y~~~ 90 (298)
T PRK04286 15 SMATFVETKDVRILIDPGVSLAPRRYGLPPHPIE----LERLEEVREKILEYAKKADVITISHYHYDHHTPFYEDPYELS 90 (298)
T ss_pred eeEEEEEECCeEEEEcCCCCcCccccCCCCcchh----HHHHHHHHHHhhcccccCCEEEecCCccccCCCccccccccc
Confidence 489999999999999996431 00 00 11111 01111 001 2445689999999999999842221100
Q ss_pred hhcCCCceEEEccchH-----H------------HHhhc--CCceEEeCCCceEEeCcccCCcEEEEEe-ecCCcCCCCC
Q 019221 156 SKMSPNLKVIATPNAK-----T------------LLDPL--FQNVTYVEPGQSSEIEGRNGSKLRVKAT-AGPVLGPPWQ 215 (344)
Q Consensus 156 ~~~~p~~~v~~~~~~~-----~------------~l~~~--~~~i~~l~~~~~~~~~~~~~~~~~i~~~-p~~~~g~~~~ 215 (344)
.++. .++++...... . ++... ......+..++.+.++ +++|+++ |..|...
T Consensus 91 ~~~~-~i~iy~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~~ig-----~~~V~~~~~v~H~~~--- 161 (298)
T PRK04286 91 DEEI-PKEIYKGKIVLIKDPTENINWSQRRRAPRFLKAVKDIAKKIEYADGKTFRFG-----GTTIEFSPPVPHGAD--- 161 (298)
T ss_pred cccc-hHHHhcCceecccCHHHHcCHHHHhhHHhHHHHHHhcCCceEECCCCEEEEC-----CEEEEEeccCCCCCC---
Confidence 0110 12222221110 0 11111 1134567778888987 8999876 5445321
Q ss_pred CCCCeEE----EEeCCCceEEEEcCCCC--Ccchhhcc---cCccEEEEccccccCC--Cc---ccccCHHHHHHHHHHc
Q 019221 216 RPENGYL----VNSSQGQLTLYYEPHCV--YNQNFLEK---ERSDIIITPVIKQLLP--KF---TLVSGQEDAVKLAKLL 281 (344)
Q Consensus 216 ~~~~g~v----i~~~~g~~~i~~sGDt~--~~~~~~~~---~~~Dl~il~~~g~~~~--~~---~~h~~~eea~~~~~~l 281 (344)
....||+ |+.+ +.+++|+||++ +.+...+. ..+|++++.+--.|.. +. ..|+..+.+.++++.
T Consensus 162 ~~~~Gy~i~~ri~~g--g~~~~~~gDt~~~~~~~~~~~l~~~d~dlLi~~~~p~~lk~~ri~~~~~h~s~~~~~~l~~~- 238 (298)
T PRK04286 162 GSKLGYVIMVRISDG--DESFVFASDVQGPLNDEAVEFILEKKPDVVIIGGPPTYLLGRRLSEEDLEKGIENLEEIVKN- 238 (298)
T ss_pred CCccceEEEEEEEeC--CEEEEEECCCCCCCCHHHHHHHhcCCCCEEEeCCcchhhhhhhhccccHHHHHHHHHHHHhc-
Confidence 0124554 4544 58999999999 44444432 3889998853111221 11 124455555555555
Q ss_pred CCCEEEEeeeCCccCcccccccccccCCHHHHHHHHHh-cCCCCeeecc
Q 019221 282 HAKFIVPMKNGDLDSKGFLASIIQSEGTVESFKELLSK-ELPDAQLLEP 329 (344)
Q Consensus 282 ~~k~vip~H~~~f~~~~~~~~~l~~~~~~e~~~~~~~~-~~~~~~~~~~ 329 (344)
++|+++.+|.-.-. ..+++-..++.+. +...+++++.
T Consensus 239 ~~k~liLtHHls~~-----------~n~~~~~~~l~~~~~~~~~~~~~~ 276 (298)
T PRK04286 239 TPETLILDHHLLRD-----------KNYREKLKELYERAEDRGVRVLTA 276 (298)
T ss_pred CCCEEEEecccccc-----------CCcHHHHHHHHHHHhhcCceEEeH
Confidence 99999999543211 2345556666542 2234566553
No 18
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=99.50 E-value=6.6e-13 Score=131.49 Aligned_cols=190 Identities=14% Similarity=0.169 Sum_probs=121.9
Q ss_pred eCcEEEEEeCCcEEEEccccCCCCCCCcccccccCCcccCCCC-C-CCCCCccEEEecCCCCCCCChhhHHHhhhcCCCc
Q 019221 85 EGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQ-L-SDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNL 162 (344)
Q Consensus 85 Ghss~li~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~-~-~~lp~iD~VlISH~H~DHld~~tl~~L~~~~p~~ 162 (344)
|-||++|+.++..|||||.. .. +-.-+. +....++.+. + +...++|+|+|||.|.|| ++.+..|....+.+
T Consensus 13 G~n~~ll~~~~~~iliD~G~---~~-~~~~~~-g~~~~iPd~~~l~~~~~~i~~I~iTH~H~DH--iggl~~l~~~~~~~ 85 (422)
T TIGR00649 13 GKNMYVVEIDDDVFIFDAGI---LF-PEDAML-GVDGVIPDFSYLQENQDKVKGIFITHGHEDH--IGAVPYLFHTVGFP 85 (422)
T ss_pred CCeEEEEEECCeEEEEeCCC---CC-Cccccc-CCccccCCHHHHHhccccCCEEEECCCChHH--hCcHHHHHHhCCCC
Confidence 57999999999999999933 21 100000 0000011010 0 123489999999999999 57888877665346
Q ss_pred eEEEccchHHHHhhc--------CCceEEeCCCceEEeCcccCCcEEEEEeecCCcCCCCCCCCCeEEEEeCCCceEEEE
Q 019221 163 KVIATPNAKTLLDPL--------FQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYY 234 (344)
Q Consensus 163 ~v~~~~~~~~~l~~~--------~~~i~~l~~~~~~~~~~~~~~~~~i~~~p~~~~g~~~~~~~~g~vi~~~~g~~~i~~ 234 (344)
++|+++.+...++.. ..++.+++.++.++++ ++++|+++++.|+.+ ...||.+++++ .+++|
T Consensus 86 ~Vy~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ig----~~~~v~~~~~~H~~p----~s~g~~i~~~~--~~ivy 155 (422)
T TIGR00649 86 PIYGTPLTIALIKSKIKENKLNVRTDLLEIHEGEPIETG----ENHTIEFIRITHSIP----DSVGFALHTPL--GYIVY 155 (422)
T ss_pred eEEeCHHHHHHHHHHHHhcCCCCCCceEEeCCCCEEEeC----CceEEEEEECCCCCc----ceEEEEEEeCC--cEEEE
Confidence 899998877655431 1356788899999995 369999999877532 13689998874 58999
Q ss_pred cCCCCCcc--------h---hhcc--cCccEEEEccccccCCCcc--cccCHHHHHHHHHHcCCCEEEEeeeC
Q 019221 235 EPHCVYNQ--------N---FLEK--ERSDIIITPVIKQLLPKFT--LVSGQEDAVKLAKLLHAKFIVPMKNG 292 (344)
Q Consensus 235 sGDt~~~~--------~---~~~~--~~~Dl~il~~~g~~~~~~~--~h~~~eea~~~~~~l~~k~vip~H~~ 292 (344)
+||+.+.. . +.+. .++|+++++.+....+... -|...++..+.++..+.+ ++-.|++
T Consensus 156 tGD~~~~~~~~~~~~~d~~~l~~~~~~g~d~Li~EsT~~~~~~~~~~e~~~~~~i~~~~~~~~~~-viv~~fa 227 (422)
T TIGR00649 156 TGDFKFDNTPVIGEPPDLNRIAEYGKKGVLLLISDSTNVENPGFTPSEAKVLEQLNDIFKNAKGR-VIVATFA 227 (422)
T ss_pred CCCcCCCCCccCCcccCHHHHHhhcccCeEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHhCCCE-EEEEEcc
Confidence 99987631 1 2222 2689999997433223222 144455666666555544 7777875
No 19
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=99.50 E-value=1.4e-12 Score=134.24 Aligned_cols=192 Identities=17% Similarity=0.221 Sum_probs=121.0
Q ss_pred CCceEEEEEeC------cEEEEEeCCcEEEEccccCCCCCCCcccccccCCcccCCCCCC--CCCCccEEEecCCCCCCC
Q 019221 76 TDVFKLTYLEG------NSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLS--DLPQVDCLLITQSLDDHC 147 (344)
Q Consensus 76 ~~~~~it~lGh------ss~li~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~--~lp~iD~VlISH~H~DHl 147 (344)
.+.|+|+.||- ||++|+.++.+|||||.+..... .. ..++.+... ++.++|+|||||.|.||+
T Consensus 172 ~~~m~i~~LGg~~eVG~Sc~Ll~~~~~~ILIDcG~~~~~~-~~--------~~~p~l~~~~~~~~~IDaVlITHaH~DHi 242 (630)
T TIGR03675 172 DRWVRVTALGGFREVGRSALLLSTPESRILLDCGVNVGAN-GD--------NAYPYLDVPEFQLDELDAVVITHAHLDHS 242 (630)
T ss_pred CCeEEEEEEecCCccCCCEEEEEECCCEEEEECCCCcccc-ch--------hhcccccccCCCHHHCcEEEECCCCHHHH
Confidence 34689999974 89999999999999995431100 00 011111111 245899999999999995
Q ss_pred ChhhHHHhhhcCCCceEEEccchHHHHh----h-------c--------------CCceEEeCCCceEEeCcccCCcEEE
Q 019221 148 HLKTLKPLSKMSPNLKVIATPNAKTLLD----P-------L--------------FQNVTYVEPGQSSEIEGRNGSKLRV 202 (344)
Q Consensus 148 d~~tl~~L~~~~p~~~v~~~~~~~~~l~----~-------~--------------~~~i~~l~~~~~~~~~~~~~~~~~i 202 (344)
+.+..|.+...+.++|+++.+..++. . . ..+++.++.++++++. ++++|
T Consensus 243 --G~LP~L~k~g~~gpIY~T~pT~~l~~~ll~D~~~i~~~~g~~~~y~~~dv~~~~~~~~~l~yg~~~~i~----~~i~v 316 (630)
T TIGR03675 243 --GLVPLLFKYGYDGPVYCTPPTRDLMTLLQLDYIDVAQREGKKPPYSSKDVREALKHTITLDYGEVTDIA----PDIKL 316 (630)
T ss_pred --hhHHHHHHhCCCCceeecHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhccEEeCCCCeEEec----CCEEE
Confidence 77887765423678999887544211 0 0 1246788999999885 47999
Q ss_pred EEeecCCcCCCCCCCCCeEEEEeCCCceEEEEcCCCCCcchh-h-----cccCccEEEEccccccCCCcccccCHHHHH-
Q 019221 203 KATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQNF-L-----EKERSDIIITPVIKQLLPKFTLVSGQEDAV- 275 (344)
Q Consensus 203 ~~~p~~~~g~~~~~~~~g~vi~~~~g~~~i~~sGDt~~~~~~-~-----~~~~~Dl~il~~~g~~~~~~~~h~~~eea~- 275 (344)
++.++-|+- ..+.+.++..++..+|+|+||.++.... . ...++|+++++.. |...-..|.+.+++.
T Consensus 317 t~~~AGHil-----Gsa~~~~~i~dg~~~IvYTGD~~~~~~~ll~~a~~~~~~vD~LI~EST--Yg~~~~~~~~r~~~e~ 389 (630)
T TIGR03675 317 TFYNAGHIL-----GSAIAHLHIGDGLYNIVYTGDFKYEKTRLLDPAVNKFPRVETLIMEST--YGGRDDYQPSREEAEK 389 (630)
T ss_pred EEecCcccc-----CceEEEEEECCCCEEEEEeCCCCCCCCcCccchhhcCCCCCEEEEeCc--cCCCCCCCCCHHHHHH
Confidence 998776531 1245566655434799999999886421 1 1247899999963 432211233333332
Q ss_pred ---HHHHH---cCCCEEEEe
Q 019221 276 ---KLAKL---LHAKFIVPM 289 (344)
Q Consensus 276 ---~~~~~---l~~k~vip~ 289 (344)
+.+++ -+.+.+||+
T Consensus 390 ~l~~~I~~tl~~gG~VLIP~ 409 (630)
T TIGR03675 390 ELIKVVNETIKRGGKVLIPV 409 (630)
T ss_pred HHHHHHHHHHhCCCEEEEEe
Confidence 22222 267788887
No 20
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=99.42 E-value=8.3e-13 Score=114.20 Aligned_cols=168 Identities=17% Similarity=0.158 Sum_probs=106.3
Q ss_pred EEEeCcEEEEEeCCcEEEEccccCCCCCCCcccccccCCcccCCCCCCCCCCccEEEecCCCCCCCChhhHHHhhhcCCC
Q 019221 82 TYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPN 161 (344)
Q Consensus 82 t~lGhss~li~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~L~~~~p~ 161 (344)
.+.+++|++|+.++.+|||||..+... ..+ +.+..+. ..++|+|+|||.|.|| +.++..+.++ ++
T Consensus 2 ~~~~~~~~li~~~~~~iliD~g~~~~~----~~~-----~~l~~~~---~~~i~~i~iTH~H~DH--~~g~~~~~~~-~~ 66 (183)
T smart00849 2 GGVGVNSYLVEGDGGAILIDTGPGEAE----DLL-----AELKKLG---PKDIDAIILTHGHPDH--IGGLPELLEA-PG 66 (183)
T ss_pred CccceeEEEEEeCCceEEEeCCCChhH----HHH-----HHHHHcC---chhhcEEEecccCcch--hccHHHHHhC-CC
Confidence 357889999999999999999432110 000 0011121 3489999999999999 5777777665 47
Q ss_pred ceEEEccchHHHHhh---------c----CCceEEeCCCceEEeCcccCCcEEEEEeecC-CcCCCCCCCCCeEEEEeCC
Q 019221 162 LKVIATPNAKTLLDP---------L----FQNVTYVEPGQSSEIEGRNGSKLRVKATAGP-VLGPPWQRPENGYLVNSSQ 227 (344)
Q Consensus 162 ~~v~~~~~~~~~l~~---------~----~~~i~~l~~~~~~~~~~~~~~~~~i~~~p~~-~~g~~~~~~~~g~vi~~~~ 227 (344)
+++|+++....+++. . ..++..++.+++++++ +.+++.++.. |+. ...++.++.
T Consensus 67 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~h~~-----~~~~~~~~~-- 134 (183)
T smart00849 67 APVYAPEGTAELLKDLLKLGGALGAEAPPPPPDRTLKDGEELDLG-----GLELEVIHTPGHTP-----GSIVLYLPE-- 134 (183)
T ss_pred CcEEEchhhhHHHhccchhccccCcCCCCCccceecCCCCEEEeC-----CceEEEEECCCCCC-----CcEEEEECC--
Confidence 889988777776652 1 2456778899999997 4555555442 111 123555543
Q ss_pred CceEEEEcCCCCCcchhhcccCccEEEEccccccCCCcccccCHHHHHHHHHHcCCCEEEEee
Q 019221 228 GQLTLYYEPHCVYNQNFLEKERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPMK 290 (344)
Q Consensus 228 g~~~i~~sGDt~~~~~~~~~~~~Dl~il~~~g~~~~~~~~h~~~eea~~~~~~l~~k~vip~H 290 (344)
.+++|+||+.+..... + ..... + .+ .+....++++...+.+.+.++|.|
T Consensus 135 --~~vl~~gD~~~~~~~~-----~-~~~~~-~----~~-~~~~~~~~~~~~~~~~~~~i~~~H 183 (183)
T smart00849 135 --GKILFTGDLLFSGGIG-----R-TDDDG-G----DA-SASDSLESLLKLLALDPELVVPGH 183 (183)
T ss_pred --CCEEEECCeeeccCCC-----C-cccCC-C----Cc-cHHHHHHHHHHhhcCCccEeecCC
Confidence 5899999998765420 0 00000 0 11 122446666777777888898887
No 21
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=99.38 E-value=1e-11 Score=125.11 Aligned_cols=172 Identities=18% Similarity=0.239 Sum_probs=123.9
Q ss_pred CceEEEEE------eCcEEEEEeCCcEEEEccccCCCCCCCcccccccCCcccCCC--CCCCCCCccEEEecCCCCCCCC
Q 019221 77 DVFKLTYL------EGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSF--QLSDLPQVDCLLITQSLDDHCH 148 (344)
Q Consensus 77 ~~~~it~l------Ghss~li~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~--~~~~lp~iD~VlISH~H~DHld 148 (344)
+.++|.-| |.|+++++.++.-+++|+.. .||-..+. |-.-.++.+ -.+...++++|||||.|.||
T Consensus 7 ~~i~i~~lGG~~EiGkN~~vve~~~~i~i~D~G~----~fp~~~~~-gvDliIPd~~yl~~n~~kvkgI~lTHgHeDH-- 79 (555)
T COG0595 7 AKIKIFALGGVGEIGKNMYVVEYGDDIIILDAGL----KFPEDDLL-GVDLIIPDFSYLEENKDKVKGIFLTHGHEDH-- 79 (555)
T ss_pred CceEEEEecChhhhccceEEEEECCcEEEEECcc----ccCccccc-cccEEecChHHhhhccccceEEEecCCchhh--
Confidence 45666665 57999999999999999933 23311110 111111211 11223489999999999999
Q ss_pred hhhHHHhhhcCCCceEEEccchHHHHhhc---------CCceEEeCCCceEEeCcccCCcEEEEEeecCCcCCCCCCCCC
Q 019221 149 LKTLKPLSKMSPNLKVIATPNAKTLLDPL---------FQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPEN 219 (344)
Q Consensus 149 ~~tl~~L~~~~p~~~v~~~~~~~~~l~~~---------~~~i~~l~~~~~~~~~~~~~~~~~i~~~p~~~~g~~~~~~~~ 219 (344)
++++..|..+...+++|+++.+..+++.. ..++++++.+++++++ +++|.++|..||-+ ...
T Consensus 80 IGaip~ll~~~~~~piy~s~lt~~Li~~k~~~~~~~~~~~~~~ev~~~~~i~~~-----~~~v~f~~vtHSIP----ds~ 150 (555)
T COG0595 80 IGALPYLLKQVLFAPIYASPLTAALIKEKLKEHGLFKNENELHEVKPGSEIKFG-----SFEVEFFPVTHSIP----DSL 150 (555)
T ss_pred ccchHHHHhcCCcCceecCHhhHHHHHHHHHHhccccccCceEEeCCCCeEEeC-----cEEEEEEeecccCc----cce
Confidence 68999998876459999999998865543 1478999999999997 89999999888765 247
Q ss_pred eEEEEeCCCceEEEEcCCCCCcc-----------hhhccc--CccEEEEccccccCCCcc
Q 019221 220 GYLVNSSQGQLTLYYEPHCVYNQ-----------NFLEKE--RSDIIITPVIKQLLPKFT 266 (344)
Q Consensus 220 g~vi~~~~g~~~i~~sGDt~~~~-----------~~~~~~--~~Dl~il~~~g~~~~~~~ 266 (344)
|++|+++.| .|+|+||-.++. .+.+++ ++++++.+.+.+..|.++
T Consensus 151 g~~i~Tp~G--~Iv~TGDFk~d~~~~~g~~~d~~r~~~~g~eGVl~LisdsTna~~pg~t 208 (555)
T COG0595 151 GIVIKTPEG--NIVYTGDFKFDPTPVDGEPTDLARLAEIGKEGVLALISDSTNAENPGFT 208 (555)
T ss_pred EEEEECCCc--cEEEeCCEEecCCcCCCCcCCHHHHHHhccCCcEEEEeCCcccCCCCCC
Confidence 999999975 899999975542 233444 789999998777666554
No 22
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=99.32 E-value=7e-11 Score=114.74 Aligned_cols=191 Identities=19% Similarity=0.237 Sum_probs=123.1
Q ss_pred CceEEEEEe------CcEEEEEeCCcEEEEccccCCCCCCCcccccccCCcccCCCCCCCCC--CccEEEecCCCCCCCC
Q 019221 77 DVFKLTYLE------GNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLP--QVDCLLITQSLDDHCH 148 (344)
Q Consensus 77 ~~~~it~lG------hss~li~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp--~iD~VlISH~H~DHld 148 (344)
.=++||.|| -||+|+++...++|+||..+. ++.+ + ..++-+...++. .+|+|+|||.|.|||
T Consensus 179 ~wvRvt~LGg~~EVGRSa~lv~T~eSrVLlDcG~n~-a~~~--~------~~~Pyl~vpE~~~~~lDAViiTHAHLDH~- 248 (637)
T COG1782 179 RWVRVTALGGFREVGRSALLVSTPESRVLLDCGVNV-AGNG--E------DAFPYLDVPEFQPDELDAVIITHAHLDHC- 248 (637)
T ss_pred ceEEEEeeccchhccceeEEEecCCceEEEeccccC-CCCc--c------ccCcccccccccccccceEEEeecccccc-
Confidence 346889886 489999999999999997642 2101 1 112212222221 689999999999997
Q ss_pred hhhHHHhhhcCCCceEEEccchHH---HHhh--------cC--------------CceEEeCCCceEEeCcccCCcEEEE
Q 019221 149 LKTLKPLSKMSPNLKVIATPNAKT---LLDP--------LF--------------QNVTYVEPGQSSEIEGRNGSKLRVK 203 (344)
Q Consensus 149 ~~tl~~L~~~~p~~~v~~~~~~~~---~l~~--------~~--------------~~i~~l~~~~~~~~~~~~~~~~~i~ 203 (344)
+.|..|-+.--+-|||+++.+.+ +|+. -| ...+.+|-++...+. .+++++
T Consensus 249 -G~lP~LfkYgy~GPVY~T~PTRDlm~LLq~Dyi~va~keg~~ppY~~k~v~~~lkhtItldYgevTDIa----PDirLT 323 (637)
T COG1782 249 -GFLPLLFKYGYDGPVYCTPPTRDLMVLLQLDYIEVAEKEGGEPPYESKDVRKVLKHTITLDYGEVTDIA----PDIRLT 323 (637)
T ss_pred -cchhhhhhcCCCCCeeeCCCcHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHheeeeeccCcccccC----CccEEE
Confidence 55777765422569999998755 2221 11 256889999988886 588888
Q ss_pred EeecCC-cCCCCCCCCCeEEEEeCCCceEEEEcCCCCCcc-hhhc-----ccCccEEEEccccccCCCcccccCHHHHHH
Q 019221 204 ATAGPV-LGPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQ-NFLE-----KERSDIIITPVIKQLLPKFTLVSGQEDAVK 276 (344)
Q Consensus 204 ~~p~~~-~g~~~~~~~~g~vi~~~~g~~~i~~sGDt~~~~-~~~~-----~~~~Dl~il~~~g~~~~~~~~h~~~eea~~ 276 (344)
+-.|-| .|. +..-+..++|.+.|.|+||..|.. .+.+ ..+++.++++. .|..+-+.+.+-+||-+
T Consensus 324 f~NAGHILGS------A~~HlHIGdGlyNi~yTGDfk~~~trLl~~A~n~FpRvEtlimEs--TYGg~~d~q~~R~eaE~ 395 (637)
T COG1782 324 FYNAGHILGS------AMAHLHIGDGLYNIVYTGDFKFEKTRLLEPANNKFPRVETLIMES--TYGGRDDVQPPREEAEK 395 (637)
T ss_pred Eecccchhcc------eeeEEEecCCceeEEEecccccceeeecChhhccCcchhheeeee--ccCCccccCccHHHHHH
Confidence 765433 222 222344555569999999998864 2332 23788899986 34433333445566655
Q ss_pred HHHHc-------CCCEEEEee
Q 019221 277 LAKLL-------HAKFIVPMK 290 (344)
Q Consensus 277 ~~~~l-------~~k~vip~H 290 (344)
.+..+ +.|.+||+-
T Consensus 396 ~L~~vi~~t~~rGGKvLIP~f 416 (637)
T COG1782 396 ELIKVINDTLKRGGKVLIPVF 416 (637)
T ss_pred HHHHHHHHHHhcCCeEEEEee
Confidence 43332 689999874
No 23
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.27 E-value=1.5e-11 Score=120.80 Aligned_cols=127 Identities=20% Similarity=0.212 Sum_probs=82.8
Q ss_pred cEEEEEeCCcEEEEccccCCCCCCCcccccccCCcccCCCCCCCCCCccEEEecCCCCCCCChhhHHHhhhcCCCceEEE
Q 019221 87 NSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVIA 166 (344)
Q Consensus 87 ss~li~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~L~~~~p~~~v~~ 166 (344)
|||||+. +.++||||+...... .++ ..+.. .-++.+||+|++||.|.|| .+++..|.+++|++++++
T Consensus 34 NsyLI~~-~~~vLIDtg~~~~~~---~~~-----~~l~~--~~~~~~Id~IilTH~H~DH--iggl~~l~~~~p~a~V~~ 100 (394)
T PRK11921 34 NSYLIKD-EKTVLIDTVWQPFAK---EFV-----ENLKK--EIDLDKIDYIVANHGEIDH--SGALPELMKEIPDTPIYC 100 (394)
T ss_pred EEEEEeC-CCEEEEeCCCCCcHH---HHH-----HHHHh--hcCcccCCEEEeCCCCCch--hhHHHHHHHHCCCCEEEE
Confidence 7899974 678999995431100 111 01111 1123479999999999999 588888887778899999
Q ss_pred ccchHHHHhhcC---CceEEeCCCceEEeCcccCCcEEEEEeecCCcCCCCCCCCCeEEEEeCCCceEEEEcCCC
Q 019221 167 TPNAKTLLDPLF---QNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHC 238 (344)
Q Consensus 167 ~~~~~~~l~~~~---~~i~~l~~~~~~~~~~~~~~~~~i~~~p~~~~g~~~~~~~~g~vi~~~~g~~~i~~sGDt 238 (344)
++.....+.... .++..++++++++++ +..+++..+|+.|+.. .+.+.+.. .+++|+||+
T Consensus 101 ~~~~~~~l~~~~~~~~~~~~v~~g~~l~lG---~~~l~~i~tP~~H~p~-----~~~~y~~~----~~vLFsgD~ 163 (394)
T PRK11921 101 TKNGAKSLKGHYHQDWNFVVVKTGDRLEIG---SNELIFIEAPMLHWPD-----SMFTYLTG----DNILFSNDA 163 (394)
T ss_pred CHHHHHHHHHHhCCCCceEEeCCCCEEeeC---CeEEEEEeCCCCCCCC-----ceEEEEcC----CCEEEecCc
Confidence 988776665432 256778999999997 2234555557634321 12333332 489999997
No 24
>PLN02398 hydroxyacylglutathione hydrolase
Probab=99.19 E-value=2.9e-10 Score=108.31 Aligned_cols=159 Identities=18% Similarity=0.197 Sum_probs=100.7
Q ss_pred EeCc-EEEEEeC--CcEEEEccccCCCCCCCcccccccCCcccCCCCCCCCCCccEEEecCCCCCCCChhhHHHhhhcCC
Q 019221 84 LEGN-SWLWDLD--GVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSP 160 (344)
Q Consensus 84 lGhs-s~li~~~--g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~L~~~~p 160 (344)
+..| +|+|... +..++||| +.+. ++ + ..+....+ ++++||+||.|+|| .+++..|.+++
T Consensus 84 l~dNy~Yli~d~~t~~~~vVDP---~~a~-~v--l--------~~l~~~g~-~L~~ILlTH~H~DH--~GG~~~L~~~~- 145 (329)
T PLN02398 84 LKDNYAYLLHDEDTGTVGVVDP---SEAV-PV--I--------DALSRKNR-NLTYILNTHHHYDH--TGGNLELKARY- 145 (329)
T ss_pred eCceEEEEEEECCCCEEEEEcC---CCHH-HH--H--------HHHHhcCC-CceEEEECCCCchh--hCCHHHHHHhc-
Confidence 4555 9999754 46899999 4332 11 1 01111222 68999999999999 68888998876
Q ss_pred CceEEEccchHHHHhhcCCceEEeCCCceEEeCcccCCcEEEEEeecCCcCCCCCCCCCeEEEEeCCCceEEEEcCCCCC
Q 019221 161 NLKVIATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCVY 240 (344)
Q Consensus 161 ~~~v~~~~~~~~~l~~~~~~i~~l~~~~~~~~~~~~~~~~~i~~~p~~~~g~~~~~~~~g~vi~~~~g~~~i~~sGDt~~ 240 (344)
++++|++......+.. --+.++.|+++.++ +..+++..+||+..| ..+|.+.. ..++|+||+-+
T Consensus 146 ga~V~g~~~~~~~i~~---~d~~v~dGd~i~lg---g~~l~vi~tPGHT~G------hI~~~~~~----~~vLFtGDtLf 209 (329)
T PLN02398 146 GAKVIGSAVDKDRIPG---IDIVLKDGDKWMFA---GHEVLVMETPGHTRG------HISFYFPG----SGAIFTGDTLF 209 (329)
T ss_pred CCEEEEehHHhhhccC---CcEEeCCCCEEEEC---CeEEEEEeCCCcCCC------CEEEEECC----CCEEEECCCcC
Confidence 7899888765433321 12457888999887 335777778886433 35776642 36899999976
Q ss_pred cchhhcccCccEEEEccccccCCCcccccCHH---HHHHHHHHcCCCE-EEEeeeCCcc
Q 019221 241 NQNFLEKERSDIIITPVIKQLLPKFTLVSGQE---DAVKLAKLLHAKF-IVPMKNGDLD 295 (344)
Q Consensus 241 ~~~~~~~~~~Dl~il~~~g~~~~~~~~h~~~e---ea~~~~~~l~~k~-vip~H~~~f~ 295 (344)
.... |. . + .-+++ ++++.+..+..+. ++|.|-.+..
T Consensus 210 ~~g~--------------Gr-~--f--eg~~~~~~~SL~rL~~L~~~t~VypGHgyt~~ 249 (329)
T PLN02398 210 SLSC--------------GK-L--F--EGTPEQMLSSLQKIISLPDDTNIYCGHEYTLS 249 (329)
T ss_pred CCCc--------------CC-C--C--CCCHHHHHHHHHHHHcCCCCeEEECCCCChhc
Confidence 5321 10 0 0 11333 4455566666665 7799987654
No 25
>PLN02469 hydroxyacylglutathione hydrolase
Probab=99.18 E-value=3.4e-10 Score=104.88 Aligned_cols=162 Identities=16% Similarity=0.166 Sum_probs=99.2
Q ss_pred EeCc-EEEEEeC--CcEEEEccccCCCCCCCcccccccCCcccCCCCCCCCCCccEEEecCCCCCCCChhhHHHhhhcCC
Q 019221 84 LEGN-SWLWDLD--GVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSP 160 (344)
Q Consensus 84 lGhs-s~li~~~--g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~L~~~~p 160 (344)
+..| +|||..+ +..+|||| +.+. + .+ ..+.-..+ ++++||+||.|+|| .+++..|.++++
T Consensus 9 ~~dNy~Yli~d~~~~~~vlIDp---~~~~-~--il--------~~l~~~g~-~l~~Il~TH~H~DH--~gG~~~l~~~~~ 71 (258)
T PLN02469 9 LEDNYAYLIIDESTKDAAVVDP---VDPE-K--VL--------QAAHEHGA-KIKLVLTTHHHWDH--AGGNEKIKKLVP 71 (258)
T ss_pred ccceEEEEEEeCCCCeEEEECC---CChH-H--HH--------HHHHHcCC-cccEEEecCCCCcc--ccCHHHHHHHCC
Confidence 4456 8999765 47899999 3222 1 11 01111122 68999999999999 588899988877
Q ss_pred CceEEEccchHHHHhhcCCceEEeCCCceEEeCcccCC-cEEEEEeecCCcCCCCCCCCCeEEEEeCCCceEEEEcCCCC
Q 019221 161 NLKVIATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGS-KLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCV 239 (344)
Q Consensus 161 ~~~v~~~~~~~~~l~~~~~~i~~l~~~~~~~~~~~~~~-~~~i~~~p~~~~g~~~~~~~~g~vi~~~~g~~~i~~sGDt~ 239 (344)
+++||+..... +. + ....+..++++.++ +. .+++..+||+..| ..+|.+....+...++|+||+-
T Consensus 72 ~~~V~~~~~~~--~~--~-~~~~v~~gd~i~lg---~~~~~~vi~tPGHT~g------hi~~~~~~~~~~~~~lFtGDtL 137 (258)
T PLN02469 72 GIKVYGGSLDN--VK--G-CTHPVENGDKLSLG---KDVNILALHTPCHTKG------HISYYVTGKEGEDPAVFTGDTL 137 (258)
T ss_pred CCEEEEechhc--CC--C-CCeEeCCCCEEEEC---CceEEEEEECCCCCCC------CEEEEeccCCCCCCEEEecCcc
Confidence 89998765321 00 1 12457788899986 11 4677888887543 3677775421123699999986
Q ss_pred CcchhhcccCccEEEEccccccCCCcccccCHHHHHHHH----HHc-CCCEEEEeeeCCcc
Q 019221 240 YNQNFLEKERSDIIITPVIKQLLPKFTLVSGQEDAVKLA----KLL-HAKFIVPMKNGDLD 295 (344)
Q Consensus 240 ~~~~~~~~~~~Dl~il~~~g~~~~~~~~h~~~eea~~~~----~~l-~~k~vip~H~~~f~ 295 (344)
+... + |.. +. -++++..+.+ ..+ ....++|.|..+..
T Consensus 138 f~~g-------------~-Gr~-~~----g~~~~~~~Sl~~~l~~Lp~~t~vypGH~yt~~ 179 (258)
T PLN02469 138 FIAG-------------C-GKF-FE----GTAEQMYQSLCVTLGSLPKPTQVYCGHEYTVK 179 (258)
T ss_pred cCCC-------------c-CCC-CC----CCHHHHHHHHHHHHHcCCCCeEEEcCCCCchh
Confidence 5421 1 211 01 1334444433 345 34579999987644
No 26
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=99.15 E-value=2.6e-10 Score=105.16 Aligned_cols=155 Identities=19% Similarity=0.256 Sum_probs=93.5
Q ss_pred EEEEEeCC-cEEEEccccCCCCCCCcccccccCCcccCCCCCCCCCCccEEEecCCCCCCCChhhHHHhhhcCCCceEEE
Q 019221 88 SWLWDLDG-VKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVIA 166 (344)
Q Consensus 88 s~li~~~g-~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~L~~~~p~~~v~~ 166 (344)
+|+|..++ ..+|||| |... . .+ +.+.. ..+ ++++|++||.|.|| .+++..|.+++ ++++|+
T Consensus 12 ~yli~~~~~~~ilID~---g~~~-~--i~-----~~l~~---~g~-~l~~Il~TH~H~DH--igG~~~l~~~~-~~~V~~ 73 (248)
T TIGR03413 12 IWLLHDPDGQAAVVDP---GEAE-P--VL-----DALEA---RGL-TLTAILLTHHHHDH--VGGVAELLEAF-PAPVYG 73 (248)
T ss_pred EEEEEcCCCCEEEEcC---CChH-H--HH-----HHHHH---cCC-eeeEEEeCCCCccc--cCCHHHHHHHC-CCeEEe
Confidence 57777654 8999999 4221 1 11 11111 122 58999999999999 57888888776 488887
Q ss_pred ccchHHHHhhcCCceEEeCCCceEEeCcccCCcEEEEEeecCCcCCCCCCCCCeEEEEeCCCceEEEEcCCCCCcchhhc
Q 019221 167 TPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQNFLE 246 (344)
Q Consensus 167 ~~~~~~~l~~~~~~i~~l~~~~~~~~~~~~~~~~~i~~~p~~~~g~~~~~~~~g~vi~~~~g~~~i~~sGDt~~~~~~~~ 246 (344)
+... ........+..++++.++ +..+++..+||+..| ..+|.+.. .+++|+||+.+....
T Consensus 74 ~~~~-----~~~~~~~~v~~g~~~~~g---~~~i~v~~tpGHT~g------~i~~~~~~----~~~lftGDtl~~~g~-- 133 (248)
T TIGR03413 74 PAEE-----RIPGITHPVKDGDTVTLG---GLEFEVLAVPGHTLG------HIAYYLPD----SPALFCGDTLFSAGC-- 133 (248)
T ss_pred cccc-----cCCCCcEEeCCCCEEEEC---CEEEEEEECCCCCcc------cEEEEECC----CCEEEEcCccccCCc--
Confidence 7643 111123568889999997 234555556665322 35777753 379999999765321
Q ss_pred ccCccEEEEccccccCCCcccccCHHHHHHHHHHcCCCE-EEEeeeCCc
Q 019221 247 KERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKF-IVPMKNGDL 294 (344)
Q Consensus 247 ~~~~Dl~il~~~g~~~~~~~~h~~~eea~~~~~~l~~k~-vip~H~~~f 294 (344)
|... ..+. ...-++++.++.+.++. ++|.|-.+.
T Consensus 134 ------------g~~~-~~~~-~~~~~Sl~~l~~l~~~~~i~pGH~~~~ 168 (248)
T TIGR03413 134 ------------GRLF-EGTP-EQMYDSLQRLAALPDDTLVYCAHEYTL 168 (248)
T ss_pred ------------CCCC-CCCH-HHHHHHHHHHHcCCCCeEEECCCCchH
Confidence 1000 0010 01234555666777775 789997654
No 27
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=2.8e-09 Score=105.60 Aligned_cols=175 Identities=18% Similarity=0.188 Sum_probs=112.9
Q ss_pred eCcEEEEEeCCcEEEEccccCCCCCCCcccccccCCcccCCCCCCCCCCccEEEecCCCCCCCChhhHHHhhhcCCCceE
Q 019221 85 EGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKV 164 (344)
Q Consensus 85 Ghss~li~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~L~~~~p~~~v 164 (344)
|-+|.+++.++.+||+||.+.. . +- . ..+ ++.. ..+++|+|+|||.|.|| .+.+..+....-+.++
T Consensus 13 g~s~~~l~~~~~~il~D~G~~~--~----~~--~--~~~-p~~~-~~~~vDavllTHaHlDH--~g~lp~l~~~~~~~~v 78 (427)
T COG1236 13 GRSCVLLETGGTRILLDCGLFP--G----DP--S--PER-PLLP-PFPKVDAVLLTHAHLDH--IGALPYLVRNGFEGPV 78 (427)
T ss_pred CcEEEEEEECCceEEEECCCCc--C----cC--C--ccC-CCCC-CCCCcCEEEeccCchhh--hcccHHHHHhccCCce
Confidence 5689999999999999995431 1 00 0 011 2222 23379999999999999 5777777653114689
Q ss_pred EEccchHHHHh----hc--------------------CCceEEeCCCceEEeCcccCCcEEEEEeecCCcCCCCCCCCCe
Q 019221 165 IATPNAKTLLD----PL--------------------FQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENG 220 (344)
Q Consensus 165 ~~~~~~~~~l~----~~--------------------~~~i~~l~~~~~~~~~~~~~~~~~i~~~p~~~~g~~~~~~~~g 220 (344)
|+++.+....+ .. ..+++.++.++.++++ +++|++.++-|.- ..++
T Consensus 79 ~aT~~T~~l~~~~l~d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~yg~~~~v~-----~~~v~~~~AGHil-----Gsa~ 148 (427)
T COG1236 79 YATPPTAALLKVLLGDSLKLAEGPDKPPYSEEDVERVPDLIRPLPYGEPVEVG-----GVKVTFYNAGHIL-----GSAA 148 (427)
T ss_pred eeccCHHHHHHHHHHHHHhhhcCCCCCCCchhHHHhhHhhEEEecCCCceEee-----eEEEEEecCCCcc-----ceeE
Confidence 99998755221 11 1356779999999998 6999998876531 1368
Q ss_pred EEEEeCCCceEEEEcCCCCCcch--hh--cc-cCccEEEEccccccCCCcccccCHHHHHH----HHHH---cCCCEEEE
Q 019221 221 YLVNSSQGQLTLYYEPHCVYNQN--FL--EK-ERSDIIITPVIKQLLPKFTLVSGQEDAVK----LAKL---LHAKFIVP 288 (344)
Q Consensus 221 ~vi~~~~g~~~i~~sGDt~~~~~--~~--~~-~~~Dl~il~~~g~~~~~~~~h~~~eea~~----~~~~---l~~k~vip 288 (344)
|.++.++ .+|+|+||.+.... .. +. ..+|++|++. .|.- ..|.+.++..+ .+++ -+...+||
T Consensus 149 ~~le~~~--~~ilytGD~~~~~~~l~~~a~~~~~~DvLI~Es--TYg~--~~~~~r~~~e~~f~~~v~~~l~~GG~vlip 222 (427)
T COG1236 149 ILLEVDG--GRILYTGDVKRRKDRLLNGAELPPCIDVLIVES--TYGD--RLHPNRDEVERRFIESVKAALERGGTVLIP 222 (427)
T ss_pred EEEEeCC--ceEEEEeccCCCcCCCCCccccCCCCcEEEEec--ccCC--ccCCCHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 8898875 57999999875332 11 11 2369999996 3432 23444433322 2222 24567777
Q ss_pred e
Q 019221 289 M 289 (344)
Q Consensus 289 ~ 289 (344)
+
T Consensus 223 a 223 (427)
T COG1236 223 A 223 (427)
T ss_pred c
Confidence 6
No 28
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.13 E-value=3e-10 Score=114.03 Aligned_cols=128 Identities=21% Similarity=0.298 Sum_probs=83.8
Q ss_pred cEEEEEeCCcEEEEccccCCCCCCCcccccccCCcccCCCCCCCCCCccEEEecCCCCCCCChhhHHHhhhcCCCceEEE
Q 019221 87 NSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVIA 166 (344)
Q Consensus 87 ss~li~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~L~~~~p~~~v~~ 166 (344)
|||||+ +++.+||||+- ..+.-.++ ..+. ..-++.+||+|++||.|.||. +++..|.+++|++++++
T Consensus 36 NsYLI~-~~~~vLIDtg~---~~~~~~~l-----~~l~--~~~~~~~Id~IilTH~H~DH~--Ggl~~Ll~~~p~a~V~~ 102 (479)
T PRK05452 36 NSYLIR-EEKNVLIDTVD---HKFSREFV-----QNLR--NEIDLADIDYIVINHAEEDHA--GALTELMAQIPDTPIYC 102 (479)
T ss_pred EEEEEE-CCCEEEEeCCC---cccHHHHH-----HHHH--hcCCHhhCCEEEeCCCCcchh--chHHHHHHHCCCCEEEE
Confidence 899998 56899999942 22100111 1111 011234799999999999994 88888887777899999
Q ss_pred ccchHHHHhhcC----CceEEeCCCceEEeCcccCCcEEEEEeecCCcCCCCCCCCCeEEEEeCCCceEEEEcCCC
Q 019221 167 TPNAKTLLDPLF----QNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHC 238 (344)
Q Consensus 167 ~~~~~~~l~~~~----~~i~~l~~~~~~~~~~~~~~~~~i~~~p~~~~g~~~~~~~~g~vi~~~~g~~~i~~sGDt 238 (344)
++.+...+.... .++..++.++++.+++ +..+++..+|+-|+.. ...+.+.. .+++||||.
T Consensus 103 s~~~~~~l~~~~~~~~~~~~~v~~G~~l~lG~--~~~l~~i~tP~~H~pg-----s~~~y~~~----~~vLFsgD~ 167 (479)
T PRK05452 103 TANAIDSINGHHHHPEWNFNVVKTGDTLDIGN--GKQLIFVETPMLHWPD-----SMMTYLTG----DAVLFSNDA 167 (479)
T ss_pred CHHHHHHHHHhhcCCcCeEEEeCCCCEEecCC--CcEEEEEECCCCCCCC-----ceEEEEcC----CCEEEeccc
Confidence 988877665431 2567889999999961 0136666677534311 12333332 489999995
No 29
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=99.12 E-value=8.6e-11 Score=112.81 Aligned_cols=182 Identities=18% Similarity=0.248 Sum_probs=109.8
Q ss_pred cEEEEEeCCcEEEEccccCCCCCCCcccccccCCcccCCCCCCCCCCccEEEecCCCCCCCChhhHHHhhhcCCCceEEE
Q 019221 87 NSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVIA 166 (344)
Q Consensus 87 ss~li~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~L~~~~p~~~v~~ 166 (344)
|||||+ +++++|||| +...+--.++ ..++ ..-++.+||+|+++|.-.|| .++++.|.+..|++++++
T Consensus 37 NSYLI~-~~k~aLID~---~~~~~~~~~l-----~~l~--~~id~k~iDYIi~~H~ePDh--sg~l~~ll~~~p~a~ii~ 103 (388)
T COG0426 37 NSYLIV-GDKTALIDT---VGEKFFDEYL-----ENLS--KYIDPKEIDYIIVNHTEPDH--SGSLPELLELAPNAKIIC 103 (388)
T ss_pred eeEEEe-CCcEEEECC---CCcchHHHHH-----HHHH--hhcChhcCeEEEECCCCcch--hhhHHHHHHhCCCCEEEe
Confidence 799999 999999999 4333210111 1111 12233479999999999999 699999999889999999
Q ss_pred ccchHHHHhhcC---CceEEeCCCceEEeCcccCCcEEEEEeecCCcCCCCCCCCCeEEEEeCCCceEEEEcCCCCCcch
Q 019221 167 TPNAKTLLDPLF---QNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQN 243 (344)
Q Consensus 167 ~~~~~~~l~~~~---~~i~~l~~~~~~~~~~~~~~~~~i~~~p~~~~g~~~~~~~~g~vi~~~~g~~~i~~sGDt~~~~~ 243 (344)
+..++..|+..+ ..+..++.|+++.+| +..+++...|--||.. +++.-.. ..+|+||+|.+- .+
T Consensus 104 s~~~~~~L~~~~~~~~~~~ivk~Gd~ldlG---g~tL~Fi~ap~LHWPd-------~m~TYd~--~~kILFS~D~fG-~h 170 (388)
T COG0426 104 SKLAARFLKGFYHDPEWFKIVKTGDTLDLG---GHTLKFIPAPFLHWPD-------TMFTYDP--EDKILFSCDAFG-AH 170 (388)
T ss_pred eHHHHHHHHHhcCCccceeecCCCCEeccC---CcEEEEEeCCCCCCCC-------ceeEeec--CCcEEEcccccc-cc
Confidence 999999888773 237889999999998 2345444444335422 2222222 248999999641 11
Q ss_pred hhcc----cCccEEEEccccccCCCccc--ccCHHHHHHHHHHcCCCEEEEeeeCCcc
Q 019221 244 FLEK----ERSDIIITPVIKQLLPKFTL--VSGQEDAVKLAKLLHAKFIVPMKNGDLD 295 (344)
Q Consensus 244 ~~~~----~~~Dl~il~~~g~~~~~~~~--h~~~eea~~~~~~l~~k~vip~H~~~f~ 295 (344)
+-.. ..+. .+++-...|.-...+ +.....+++.+..++.+.+.|.|...|.
T Consensus 171 ~~~~~~fded~~-~~~~~~~~Y~~~lm~p~~~~v~~~l~~~~~l~i~~IaP~HG~i~~ 227 (388)
T COG0426 171 VCDDYRFDEDIE-ELLPDMRKYYANLMAPNARLVLWALKKIKLLKIEMIAPSHGPIWR 227 (388)
T ss_pred ccchhccccCHH-HHHHHHHHHHHHhhcccHHHHHHHHhhhcccCccEEEcCCCceee
Confidence 1110 0111 011100001000001 1123455555556678888898887665
No 30
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=99.09 E-value=3.3e-09 Score=95.21 Aligned_cols=216 Identities=15% Similarity=0.232 Sum_probs=114.2
Q ss_pred EEEEEeCCcEEEEccccCCCCCCCcccccccCCcccC--CCC-----C-CCCCCccEEEecCCCCCCCCh-------h--
Q 019221 88 SWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLK--SFQ-----L-SDLPQVDCLLITQSLDDHCHL-------K-- 150 (344)
Q Consensus 88 s~li~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~--~~~-----~-~~lp~iD~VlISH~H~DHld~-------~-- 150 (344)
+.+|++.+..|||||.-| . .|-.+..|..+.+ .+. + +-..+.|.|.|||.||||.+. +
T Consensus 17 At~vet~dv~ILiDpGVs----L-aPkRy~LPPh~~E~erl~~~r~~i~~~ak~a~VitISHYHYDHhtPf~~~~y~~s~ 91 (304)
T COG2248 17 ATFVETKDVGILIDPGVS----L-APKRYGLPPHQRELERLRQAREKIQRYAKKADVITISHYHYDHHTPFFDGIYEASG 91 (304)
T ss_pred hheeecCCeeEEECCccc----c-CccccCCCCCHHHHHHHHHHHHHHHHHHhhCCEEEEeeeccccCCccccchhhhcc
Confidence 668999999999999332 1 1111111110000 000 0 112578999999999999865 2
Q ss_pred -hHHHhhhcCCCceEEEccch-H---------HHHhhcC--CceEEeCCCceEEeCcccCCcEEEEEeecCCcCCCCCCC
Q 019221 151 -TLKPLSKMSPNLKVIATPNA-K---------TLLDPLF--QNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRP 217 (344)
Q Consensus 151 -tl~~L~~~~p~~~v~~~~~~-~---------~~l~~~~--~~i~~l~~~~~~~~~~~~~~~~~i~~~p~~~~g~~~~~~ 217 (344)
+-+.|.+ .+.-++-.|.. . .+|++.+ .+-++...+.+++++ +..|.+-|...-|+ .+.
T Consensus 92 e~~~eiY~--gK~lLlKhPte~IN~SQ~~Ra~~fl~~~~~~~~~ie~ADgk~f~fG-----~t~IefS~pvpHG~--eGs 162 (304)
T COG2248 92 ETAKEIYK--GKLLLLKHPTENINRSQRRRAYRFLESLKDIAREIEYADGKTFEFG-----GTVIEFSPPVPHGR--EGS 162 (304)
T ss_pred cchHHHhc--CcEEEecCchhhhCHHHHHHHHHHHHHhhhhcceeEecCCceEEeC-----CEEEEecCCCCCCC--ccc
Confidence 3344443 13333334421 1 1344432 345677788999997 78887655431122 123
Q ss_pred CCeEEEEe--CCCceEEEEcCCCC-C--cch--hhcccCccEEEEccccccCCCccc-ccCHHHHHHHHHHc---CCCEE
Q 019221 218 ENGYLVNS--SQGQLTLYYEPHCV-Y--NQN--FLEKERSDIIITPVIKQLLPKFTL-VSGQEDAVKLAKLL---HAKFI 286 (344)
Q Consensus 218 ~~g~vi~~--~~g~~~i~~sGDt~-~--~~~--~~~~~~~Dl~il~~~g~~~~~~~~-h~~~eea~~~~~~l---~~k~v 286 (344)
..|||+.. .+++.+|.|+.|+- . +.. |.....+|++|+.-.-.|.-.+.. -.+.|-+++=++.+ ..+.+
T Consensus 163 kLGyVl~v~V~dg~~~i~faSDvqGp~~~~~l~~i~e~~P~v~ii~GPpty~lg~r~~~~~~E~~irNl~~ii~~~~~~l 242 (304)
T COG2248 163 KLGYVLMVAVTDGKSSIVFASDVQGPINDEALEFILEKRPDVLIIGGPPTYLLGYRVGPKSLEKGIRNLERIIEETNATL 242 (304)
T ss_pred ccceEEEEEEecCCeEEEEcccccCCCccHHHHHHHhcCCCEEEecCCchhHhhhhcChHHHHHHHHHHHHHHHhCcceE
Confidence 46888643 23368999999973 2 222 333359999998521122211111 11335454433333 23555
Q ss_pred EEeeeCCccCcccccccccccCCHHHHHHHHHh-cCCCCeeec
Q 019221 287 VPMKNGDLDSKGFLASIIQSEGTVESFKELLSK-ELPDAQLLE 328 (344)
Q Consensus 287 ip~H~~~f~~~~~~~~~l~~~~~~e~~~~~~~~-~~~~~~~~~ 328 (344)
|--|.- +.+..|.+-++++.+. .+.++++.+
T Consensus 243 ViDHHl-----------lRD~~y~e~l~~l~~~~~~~GV~v~T 274 (304)
T COG2248 243 VIDHHL-----------LRDKNYREFLEELFERAEKAGVEVAT 274 (304)
T ss_pred EEeehh-----------hcCCCHHHHHHHHHhhHhhcCceeee
Confidence 555553 3446677777777654 233455544
No 31
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=99.09 E-value=7.7e-11 Score=101.64 Aligned_cols=179 Identities=15% Similarity=0.163 Sum_probs=94.6
Q ss_pred EEeCcEEEEEeCCcEEEEccccCCCCCCCcccccccCCcccCCCCCCCCCCccEEEecCCCCCCCChhhHHHhhhcCCCc
Q 019221 83 YLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNL 162 (344)
Q Consensus 83 ~lGhss~li~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~L~~~~p~~ 162 (344)
+.+.+||+|+.++..|||||...... .-.. ....... ...+|++||+||.|+|| .+++..|.++.+.
T Consensus 3 ~~~~n~~li~~~~~~iliD~G~~~~~----~~~~---~~~~~~~---~~~~i~~vi~TH~H~DH--~ggl~~~~~~~~~- 69 (194)
T PF00753_consen 3 EGGSNSYLIEGGDGAILIDTGLDPDF----AKEL---ELALLGI---SGEDIDAVILTHAHPDH--IGGLPELLEAGPV- 69 (194)
T ss_dssp SEEEEEEEEEETTEEEEESEBSSHHH----HHHH---HHHHHHH---TGGGEEEEEESSSSHHH--HTTHHHHHHHTTE-
T ss_pred CeeEEEEEEEECCEEEEEeCCCCchh----hHHh---hhhHhhc---cCCCeEEEEECcccccc--cccccccccccce-
Confidence 46789999999999999999443111 0000 0000012 22489999999999999 6899999888643
Q ss_pred eEEEccchHH-HHhhc------------CCceEEeCCCceEEeCcccCCcEEEEEeecCCcCCCCCCCCCeEEEEeCCCc
Q 019221 163 KVIATPNAKT-LLDPL------------FQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQ 229 (344)
Q Consensus 163 ~v~~~~~~~~-~l~~~------------~~~i~~l~~~~~~~~~~~~~~~~~i~~~p~~~~g~~~~~~~~g~vi~~~~g~ 229 (344)
..+....... ..... ..........+..... ....+...+++.- ...++++..++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~------~~~~~~~~~~~-- 137 (194)
T PF00753_consen 70 VIIYSSADAAKAIRPPDRDSASRRGPAVPPPPIIDEDEDDLEIG----GDRILFIIPGPGH------GSDSLIIYLPG-- 137 (194)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHHHHHESEEEEEETTTEEEEE----TTEEEEEEESSSS------STTEEEEEETT--
T ss_pred eeeeccccccccccccccccccccccccccccceeeeccccccc----ccccccceecccc------CCcceEEEeCC--
Confidence 3333333322 11111 0111222222333332 2444444443311 23577777663
Q ss_pred eEEEEcCCCCCcchhhcccCccEEEEccccccCCCcccccCHHHHHHHHHHcCCCEEEEee
Q 019221 230 LTLYYEPHCVYNQNFLEKERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPMK 290 (344)
Q Consensus 230 ~~i~~sGDt~~~~~~~~~~~~Dl~il~~~g~~~~~~~~h~~~eea~~~~~~l~~k~vip~H 290 (344)
.+++|+||..+........ .+ ....+.............++++.+..+++++++|.|
T Consensus 138 ~~vlftGD~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ii~gH 194 (194)
T PF00753_consen 138 GKVLFTGDLLFSNEHPNPD-PD---LPLRGADVRYGSNWEESIEALRRLEALDPEVIIPGH 194 (194)
T ss_dssp TTEEEEETTSCTTTSSSSS-TS---HTTTTHTTSHTTHHHHHHHHHHHHHTSTTSEEEESS
T ss_pred CcEEEeeeEeccCCccccc-cc---cccccccccCcHHHHHHHHHHHHHHCCCCCEEEeCc
Confidence 6999999998764322110 00 000000000000011235556667777999999987
No 32
>PLN02962 hydroxyacylglutathione hydrolase
Probab=99.06 E-value=1.8e-09 Score=99.59 Aligned_cols=163 Identities=20% Similarity=0.226 Sum_probs=97.7
Q ss_pred eCcEEEEEe----CCcEEEEccccCCCCCCCcccccccCCcccCCCCCCCCCCccEEEecCCCCCCCChhhHHHhhhcCC
Q 019221 85 EGNSWLWDL----DGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSP 160 (344)
Q Consensus 85 Ghss~li~~----~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~L~~~~p 160 (344)
+++||+|-. .+..+||||.. .. .+.+ +..+.-..+ +|.+||+||.|.|| .+.+..|.++++
T Consensus 22 ~~~~Yll~d~~~~~~~avlIDP~~---~~--~~~~-------l~~l~~~g~-~i~~Il~TH~H~DH--igg~~~l~~~~~ 86 (251)
T PLN02962 22 STYTYLLADVSHPDKPALLIDPVD---KT--VDRD-------LSLVKELGL-KLIYAMNTHVHADH--VTGTGLLKTKLP 86 (251)
T ss_pred eeEEEEEEeCCCCCCEEEEECCCC---Cc--HHHH-------HHHHHHCCC-eeEEEEcCCCCchh--HHHHHHHHHHCC
Confidence 678999975 35789999932 11 0111 011111122 57899999999999 688888988777
Q ss_pred CceEEEccchHHHHhhcCCceEEeCCCceEEeCcccCCcEEEEEeecCCcCCCCCCCCCeEEEEeC--CCceEEEEcCCC
Q 019221 161 NLKVIATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSS--QGQLTLYYEPHC 238 (344)
Q Consensus 161 ~~~v~~~~~~~~~l~~~~~~i~~l~~~~~~~~~~~~~~~~~i~~~p~~~~g~~~~~~~~g~vi~~~--~g~~~i~~sGDt 238 (344)
++++++..... ..--..++.++++.++ +..+++..+||+..| ..+|++... +...+++|+||+
T Consensus 87 ~a~v~~~~~~~------~~~d~~l~~g~~i~~g---~~~l~vi~tPGHT~g------~v~~~~~d~~~~~~~~~lftGD~ 151 (251)
T PLN02962 87 GVKSIISKASG------SKADLFVEPGDKIYFG---DLYLEVRATPGHTAG------CVTYVTGEGPDQPQPRMAFTGDA 151 (251)
T ss_pred CCeEEeccccC------CCCCEEeCCCCEEEEC---CEEEEEEECCCCCcC------cEEEEeccCCCCCccceEEECCe
Confidence 88888765321 1111347888999987 335677778887433 257776431 112479999998
Q ss_pred CCcchhhcccCccEEEEccccccCCCcccccCHHHHHH-HHHHcCCC-EEEEeee
Q 019221 239 VYNQNFLEKERSDIIITPVIKQLLPKFTLVSGQEDAVK-LAKLLHAK-FIVPMKN 291 (344)
Q Consensus 239 ~~~~~~~~~~~~Dl~il~~~g~~~~~~~~h~~~eea~~-~~~~l~~k-~vip~H~ 291 (344)
-+.... +..|+ + +| .. ...-++++ .+..+..+ .++|.|.
T Consensus 152 Lf~~g~---Gr~d~---~-~g------~~-~~l~~Sl~~~l~~L~~~~~i~PGHg 192 (251)
T PLN02962 152 LLIRGC---GRTDF---Q-GG------SS-DQLYKSVHSQIFTLPKDTLIYPAHD 192 (251)
T ss_pred eccCCc---CCCCC---C-CC------CH-HHHHHHHHHHHHcCCCCeEEECCCC
Confidence 654321 33332 1 11 10 01234443 55566665 5899997
No 33
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=99.03 E-value=1.8e-09 Score=99.73 Aligned_cols=155 Identities=21% Similarity=0.306 Sum_probs=92.5
Q ss_pred EEEEEe-CCcEEEEccccCCCCCCCcccccccCCcccCCCCCCCCCCccEEEecCCCCCCCChhhHHHhhhcCCCceEEE
Q 019221 88 SWLWDL-DGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVIA 166 (344)
Q Consensus 88 s~li~~-~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~L~~~~p~~~v~~ 166 (344)
+|+|.. ++..+|||| |.+. + .+ .. +....+ ++++||+||.|+|| .+++..|.++++.+++|+
T Consensus 14 ~~li~~~~~~~ilIDp---g~~~-~--vl-----~~---l~~~g~-~l~~IllTH~H~DH--igG~~~l~~~~~~~~V~~ 76 (251)
T PRK10241 14 IWVLNDEAGRCLIVDP---GEAE-P--VL-----NA---IAENNW-QPEAIFLTHHHHDH--VGGVKELVEKFPQIVVYG 76 (251)
T ss_pred EEEEEcCCCcEEEECC---CChH-H--HH-----HH---HHHcCC-ccCEEEeCCCCchh--hccHHHHHHHCCCCEEEe
Confidence 366654 567999999 4322 1 11 01 111112 56899999999999 578889988877788887
Q ss_pred ccchHHHHhhcCCceEEeCCCceEEeCcccCCcEEEEEeecCCcCCCCCCCCCeEEEEeCCCceEEEEcCCCCCcchhhc
Q 019221 167 TPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQNFLE 246 (344)
Q Consensus 167 ~~~~~~~l~~~~~~i~~l~~~~~~~~~~~~~~~~~i~~~p~~~~g~~~~~~~~g~vi~~~~g~~~i~~sGDt~~~~~~~~ 246 (344)
+..... ....+.+..++++.++ +..+++..+||+..| ..+|+. . .++|+||+-+....
T Consensus 77 ~~~~~~-----~~~~~~v~~g~~i~ig---~~~~~vi~tPGHT~g------hi~~~~--~----~~lFtGDtlf~~g~-- 134 (251)
T PRK10241 77 PQETQD-----KGTTQVVKDGETAFVL---GHEFSVFATPGHTLG------HICYFS--K----PYLFCGDTLFSGGC-- 134 (251)
T ss_pred cccccc-----cCCceEeCCCCEEEeC---CcEEEEEEcCCCCcc------ceeeec--C----CcEEEcCeeccCCc--
Confidence 654211 1123567788889986 335777778886433 245542 2 47999998764321
Q ss_pred ccCccEEEEccccccCCCcccccCHHHHHHHHHHcCCCE-EEEeeeCCcc
Q 019221 247 KERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKF-IVPMKNGDLD 295 (344)
Q Consensus 247 ~~~~Dl~il~~~g~~~~~~~~h~~~eea~~~~~~l~~k~-vip~H~~~f~ 295 (344)
|... ..+. ...-++++.+..+.++. ++|.|-.+..
T Consensus 135 ------------gr~f-~g~~-~~~~~Sl~kl~~l~~~t~i~pgH~y~~~ 170 (251)
T PRK10241 135 ------------GRLF-EGTA-SQMYQSLKKINALPDDTLICCAHEYTLS 170 (251)
T ss_pred ------------CCCC-CCCH-HHHHHHHHHHHcCCCCEEEECCCCChhh
Confidence 1100 0010 01244555666677876 5578976643
No 34
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=99.01 E-value=1e-08 Score=94.89 Aligned_cols=156 Identities=12% Similarity=0.090 Sum_probs=92.9
Q ss_pred CCCCccEEEecCCCCCCCChhhHHHhh-------hcCCCceEEEccchHHHHh-------hc-----C-CceEEeCCCce
Q 019221 130 DLPQVDCLLITQSLDDHCHLKTLKPLS-------KMSPNLKVIATPNAKTLLD-------PL-----F-QNVTYVEPGQS 189 (344)
Q Consensus 130 ~lp~iD~VlISH~H~DHld~~tl~~L~-------~~~p~~~v~~~~~~~~~l~-------~~-----~-~~i~~l~~~~~ 189 (344)
.+..++.|||||.|.||. +++..+. .+.+...||+++......+ ++ + .++..+..++.
T Consensus 37 k~~~l~~vFlTH~H~DHi--~gL~~~~~~~~~~~~~~~p~~Vy~P~g~~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~e~ 114 (277)
T TIGR02650 37 KVAAFKVFFLHGGHDDHA--AGLGGVNIINNGGGDDEEKLDDFFPKEGNAAEEETSEFIKAANEDLFFFFNHHLEEEDER 114 (277)
T ss_pred hHhhcCEEEeecCchhhh--cchHHHHhhhhhcccCCCCCeEECCcchhHHHHHHHHHHHHhhhhhccCcccCCCCCCcE
Confidence 345789999999999995 5552221 1223455776666444443 22 1 12222333333
Q ss_pred EEeCcccCCcEEEEEeecCCcCCCCCCCCCeEEEE------------------------------eCCCceEEEEcCCCC
Q 019221 190 SEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVN------------------------------SSQGQLTLYYEPHCV 239 (344)
Q Consensus 190 ~~~~~~~~~~~~i~~~p~~~~g~~~~~~~~g~vi~------------------------------~~~g~~~i~~sGDt~ 239 (344)
+.+. ..|....|.+++..|.-.. ....||+|. +.....+|.|+|||.
T Consensus 115 ~~~r-~~~~~~~V~~f~t~H~v~~--~~s~GY~~~~~r~KLK~E~~~l~~~eI~~l~~~gg~~~t~e~~~~~vvysGDT~ 191 (277)
T TIGR02650 115 FFLD-AAGFFKRVQPFFRKHHASE--ESFFGHHFEERRKKKEEEFGGDDKKEARLLKEEGGDDFTREEHHKILLIIGDDL 191 (277)
T ss_pred EEee-cCCccEEEecCccccccCc--cCccCeEEEEEeecchHhHcCCCHHHHHHHHHhCCccccccccCcEEEEeCCCC
Confidence 3332 0112467777766653100 001244432 111137899999999
Q ss_pred CcchhhcccCccEEEEccccccCC----CcccccCHHHHHHHHHHcCCCEEEEeeeCC
Q 019221 240 YNQNFLEKERSDIIITPVIKQLLP----KFTLVSGQEDAVKLAKLLHAKFIVPMKNGD 293 (344)
Q Consensus 240 ~~~~~~~~~~~Dl~il~~~g~~~~----~~~~h~~~eea~~~~~~l~~k~vip~H~~~ 293 (344)
+... ....+.|++|+++. |.. .-..|++.+|+++.++..+++.++.+|+..
T Consensus 192 ~~~~-~~a~~adlLIhEaT--f~d~~~~~~~gH~t~~eaa~~A~~a~vk~LiLtH~Ss 246 (277)
T TIGR02650 192 AADD-EEEEGGEELIHECC--FFDDADDRRKKHAAADDEMEESKKAAGKKKIILHHIS 246 (277)
T ss_pred CCCh-HHhcCCCEEEEecc--cccccccccCCCCCHHHHHHHHHHcCCCEEEEEeecc
Confidence 8853 22359999999983 221 112499999999999999999999999865
No 35
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=98.95 E-value=4.4e-08 Score=88.91 Aligned_cols=72 Identities=26% Similarity=0.364 Sum_probs=51.8
Q ss_pred EEEEEeCCcEEEEccccCCCCCCCcccccccCCcccCCCCCCCCCCccEEEecCCCCCCCChhhHHHhhhc-CCCceEEE
Q 019221 88 SWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKM-SPNLKVIA 166 (344)
Q Consensus 88 s~li~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~L~~~-~p~~~v~~ 166 (344)
|+||+.++++||+|+ |..+ ..++. ....+.+ ++.+||+|+|||.|||| .+.|+.+.+. .+++++|+
T Consensus 24 S~LVE~~~~riLFDt---G~~~--~~ll~-----Na~~lgv-d~~did~vvlSHgH~DH--~GGL~~~~~~~~~~i~v~a 90 (259)
T COG1237 24 SALVEDEGTRILFDT---GTDS--DVLLH-----NARLLGV-DLRDIDAVVLSHGHYDH--TGGLPYLLEENNPGIPVYA 90 (259)
T ss_pred EEEEEcCCeEEEEeC---CCCc--HHHHH-----HHHHcCC-CcccCcEEEEeCCCccc--cCchHhHHhccCCCceEEe
Confidence 689999999999999 5222 22331 1112222 23488999999999999 5888888664 37899999
Q ss_pred ccchHH
Q 019221 167 TPNAKT 172 (344)
Q Consensus 167 ~~~~~~ 172 (344)
+|....
T Consensus 91 hp~af~ 96 (259)
T COG1237 91 HPDAFK 96 (259)
T ss_pred ChHHHh
Confidence 998755
No 36
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=98.90 E-value=6.7e-08 Score=90.03 Aligned_cols=182 Identities=18% Similarity=0.287 Sum_probs=110.6
Q ss_pred EeCcEEEEEeCCcEEEEccccCCCCCCCcccccccCCcccCCC---C-CCCC-CCccEEEecCCCCCCCChhhHHHhhhc
Q 019221 84 LEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSF---Q-LSDL-PQVDCLLITQSLDDHCHLKTLKPLSKM 158 (344)
Q Consensus 84 lGhss~li~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~---~-~~~l-p~iD~VlISH~H~DHld~~tl~~L~~~ 158 (344)
+|-||+|+.++|++|++|+...- ++ .-.||++.+ . -..+ ..||.|+|||.|.||| ++|..+.+.
T Consensus 15 vGrSCilvsi~Gk~iM~DCGMHM----G~-----nD~rRfPdFSyI~~~g~~~~~idCvIIsHFHlDHc--GaLPyfsEv 83 (501)
T KOG1136|consen 15 VGRSCILVSIGGKNIMFDCGMHM----GF-----NDDRRFPDFSYISKSGRFTDAIDCVIISHFHLDHC--GALPYFSEV 83 (501)
T ss_pred cCceEEEEEECCcEEEEeccccc----cc-----CccccCCCceeecCCCCcccceeEEEEeeeccccc--ccccchHhh
Confidence 36799999999999999994431 11 112455421 1 1122 2689999999999997 667666553
Q ss_pred C-CCceEEEccchHH----HHhhc--------C--------------CceEEeCCCceEEeCcccCCcEEEEEeecCC-c
Q 019221 159 S-PNLKVIATPNAKT----LLDPL--------F--------------QNVTYVEPGQSSEIEGRNGSKLRVKATAGPV-L 210 (344)
Q Consensus 159 ~-p~~~v~~~~~~~~----~l~~~--------~--------------~~i~~l~~~~~~~~~~~~~~~~~i~~~p~~~-~ 210 (344)
. -+-++|.+-.+.. +|+.. | ++++.++-.|+++++ .++.|++.-+-| .
T Consensus 84 ~GY~GPIYMt~PTkaicPvlLeDyRkv~vd~kGe~n~FT~q~I~nCMKKVv~i~l~qt~~vD----~dl~IrayYAGHVL 159 (501)
T KOG1136|consen 84 VGYDGPIYMTYPTKAICPVLLEDYRKVAVDRKGESNFFTTQDIKNCMKKVVAIDLHQTIQVD----EDLQIRAYYAGHVL 159 (501)
T ss_pred hCCCCceEEecchhhhchHHHHHHHHHhccccCcccceeHHHHHHHHhheeEeeehheEEec----ccceeeeeeccccc
Confidence 2 1456666544432 23221 1 478888888999986 589998765432 2
Q ss_pred CCCCCCCCCeEEEEeCCCceEEEEcCCCCCcc--hhh----cccCccEEEEccccccCC--CcccccCHHHHHHHHH---
Q 019221 211 GPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQ--NFL----EKERSDIIITPVIKQLLP--KFTLVSGQEDAVKLAK--- 279 (344)
Q Consensus 211 g~~~~~~~~g~vi~~~~g~~~i~~sGDt~~~~--~~~----~~~~~Dl~il~~~g~~~~--~~~~h~~~eea~~~~~--- 279 (344)
| ..-|.+..++ ++|+|+||-...+ |+- ..-++||+|.+. .|.- +-.-...-.+-++++.
T Consensus 160 G------AaMf~ikvGd--~svvYTGDYnmTpDrHLGaA~id~~rpdlLIsES--TYattiRdskr~rERdFLk~VhecV 229 (501)
T KOG1136|consen 160 G------AAMFYIKVGD--QSVVYTGDYNMTPDRHLGAAWIDKCRPDLLISES--TYATTIRDSKRCRERDFLKKVHECV 229 (501)
T ss_pred c------eeEEEEEecc--eeEEEecCccCCcccccchhhhccccCceEEeec--cceeeeccccchhHHHHHHHHHHHH
Confidence 2 2455666653 7999999966543 332 224999999886 2332 0000112233344333
Q ss_pred HcCCCEEEEee
Q 019221 280 LLHAKFIVPMK 290 (344)
Q Consensus 280 ~l~~k~vip~H 290 (344)
.-+.|.+||+-
T Consensus 230 a~GGkvlIPvF 240 (501)
T KOG1136|consen 230 ARGGKVLIPVF 240 (501)
T ss_pred hcCCeEEEEee
Confidence 33788899873
No 37
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=98.90 E-value=7.8e-10 Score=111.90 Aligned_cols=201 Identities=16% Similarity=0.203 Sum_probs=119.4
Q ss_pred CCceEEEEEeC-----------cEEEEEeCCcE-EEEccccCCCCCCCcccccccCCcccC-CCCCCCCCCccEEEecCC
Q 019221 76 TDVFKLTYLEG-----------NSWLWDLDGVK-VLVDPILVGNLDFGIPWLFDAGKKFLK-SFQLSDLPQVDCLLITQS 142 (344)
Q Consensus 76 ~~~~~it~lGh-----------ss~li~~~g~~-ILiDP~~~g~~s~p~~~~~~~~~~~~~-~~~~~~lp~iD~VlISH~ 142 (344)
.+.++|.+||. |+++++++... ||.|| |..+++ -+ .|++- ......+.+.-+|+|||.
T Consensus 440 ~~~~eIi~LGTGSaiPskyRNVSS~lv~i~~~~~IlLDC---GEgTlg--ql----~R~YG~~~~~~~lr~LraI~ISHl 510 (746)
T KOG2121|consen 440 KKDPEIIFLGTGSAIPSKYRNVSSILVRIDSDDSILLDC---GEGTLG--QL----VRHYGVENVDTALRKLRAIFISHL 510 (746)
T ss_pred cCCcEEEEecCCccCCCcccceEEEEEeccCCccEEeec---CCchHH--HH----HHHhhhcchHHHHHhHHHHHHHhh
Confidence 35789999995 68999996655 99999 766531 11 12222 111223457789999999
Q ss_pred CCCCC-ChhhHHHhh-hcC---CCceEEEc-cc-hHHHHhhcC-------CceEEeC-CCceEE-----------eCc--
Q 019221 143 LDDHC-HLKTLKPLS-KMS---PNLKVIAT-PN-AKTLLDPLF-------QNVTYVE-PGQSSE-----------IEG-- 194 (344)
Q Consensus 143 H~DHl-d~~tl~~L~-~~~---p~~~v~~~-~~-~~~~l~~~~-------~~i~~l~-~~~~~~-----------~~~-- 194 (344)
|.||- ++..+.+-+ +.. ..-+++++ |. ...||+.+- ....-+. .++.+. +..
T Consensus 511 HADHh~Gl~~vL~~r~k~~k~~~~~pl~vv~P~ql~~wl~~y~~~~~~~~~~~~~i~~~g~lf~~~s~~s~~~~~~~~~l 590 (746)
T KOG2121|consen 511 HADHHLGLISVLQARTKLLKGVENSPLLVVAPRQLKKWLQEYHRCPSFPASSVAKIGAPGALFAQKSPDSVPERLLSYLL 590 (746)
T ss_pred cccccccHHHHHHHHHHhccccccCceEEeChHHHHHHHHHHhcCcccchhhhhhhcCchhhhhccCccccchhhhhHHH
Confidence 99985 232222111 111 12233333 22 344776652 0000011 111111 000
Q ss_pred ccCCcEEEEEeecCCcCCCCCCCCCeEEEEeCCCceEEEEcCCCCCcchhhccc-CccEEEEccccccCCCc------cc
Q 019221 195 RNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQNFLEKE-RSDIIITPVIKQLLPKF------TL 267 (344)
Q Consensus 195 ~~~~~~~i~~~p~~~~g~~~~~~~~g~vi~~~~g~~~i~~sGDt~~~~~~~~~~-~~Dl~il~~~g~~~~~~------~~ 267 (344)
...+...|...|..|... ..|..|.... +.+|.|+|||..++.+.+.+ +.||+|.+.. ..-.- .-
T Consensus 591 ~~~~l~~i~tc~viHCp~-----syg~~i~~~~-~~Ki~YSGDTrP~~~~v~~g~datlLIHEAT--~ED~l~EeAv~k~ 662 (746)
T KOG2121|consen 591 RELGLESIQTCPVIHCPQ-----SYGCSITHGS-GWKIVYSGDTRPCEDLVKAGKDATLLIHEAT--LEDDLEEEAVEKG 662 (746)
T ss_pred HhcCceeEEecCcEecCh-----hhceeEeccc-ceEEEEcCCCCCchhHhhhccCCceEEeehh--hchhHHHHHHHhC
Confidence 001245555556555321 2355555443 47999999999999999887 9999999862 11100 12
Q ss_pred ccCHHHHHHHHHHcCCCEEEEeeeCC
Q 019221 268 VSGQEDAVKLAKLLHAKFIVPMKNGD 293 (344)
Q Consensus 268 h~~~eea~~~~~~l~~k~vip~H~~~ 293 (344)
|.+..||++..+..++|.+|.+|++-
T Consensus 663 HST~sEAi~V~~~m~ar~liLTHFSQ 688 (746)
T KOG2121|consen 663 HSTTSEAISVAKKMNAKRLILTHFSQ 688 (746)
T ss_pred CCCHHHHHHHHHhccchhhhhhhhhc
Confidence 89999999999999999999999874
No 38
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=98.86 E-value=2.3e-08 Score=98.20 Aligned_cols=159 Identities=18% Similarity=0.224 Sum_probs=104.7
Q ss_pred CCceEEEEEe------CcEEEEEeCCcEEEEccccCCCCCCCcccccccCCcccCCCCCCCCCCccEEEecCCCCCCCCh
Q 019221 76 TDVFKLTYLE------GNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHL 149 (344)
Q Consensus 76 ~~~~~it~lG------hss~li~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~ 149 (344)
.+.+.++-|| -||.++|..|++|+.||......+ + + ..++-++.-|++.||.++|||.|.||+
T Consensus 11 ~d~l~~~pLGag~EVGRSC~ile~kGk~iMld~gvhpays-g---~-----aslpf~d~vd~s~id~llIthFhldh~-- 79 (668)
T KOG1137|consen 11 SDQLKFTPLGAGNEVGRSCHILEYKGKTIMLDCGVHPAYS-G---M-----ASLPFYDEVDLSAIDPLLITHFHLDHA-- 79 (668)
T ss_pred CCcEEEEECCCCcccCceEEEEEecCeEEEeccccCcccc-c---c-----ccccchhhcccccccHHHHhhhhhhhc--
Confidence 4566777775 599999999999999993321100 0 0 011223455678999999999999996
Q ss_pred hhHHHhhhcC-CCceEEEccchH---HHHhhc----------------------CCceEEeCCCceEEeCcccCCcEEEE
Q 019221 150 KTLKPLSKMS-PNLKVIATPNAK---TLLDPL----------------------FQNVTYVEPGQSSEIEGRNGSKLRVK 203 (344)
Q Consensus 150 ~tl~~L~~~~-p~~~v~~~~~~~---~~l~~~----------------------~~~i~~l~~~~~~~~~~~~~~~~~i~ 203 (344)
..+..+.++. -.-++|.+-.+. +||.+- ..+|..+|-.|.++++ +++|+
T Consensus 80 aslp~~~qkTsf~grvfmth~TkAi~kwllsdyvrvs~~s~~~~Ly~e~dl~~s~dKie~idfhe~~ev~-----gIkf~ 154 (668)
T KOG1137|consen 80 ASLPFTLQKTSFIGRVFMTHPTKAIYKWLLSDYVRVSNRSGDDRLYTEGDLMESMDKIETIDFHETVEVN-----GIKFW 154 (668)
T ss_pred ccccceeeeccccceeEEecchHHHHHhhhhcceEeeeccCccccccchhHHHhhhhheeeeeccccccC-----CeEEE
Confidence 6777766542 123455544432 244321 1356667777777776 89998
Q ss_pred EeecCCcCCCCCCCCCeEEEEeCCCceEEEEcCCCC--Ccchhhcc----cCccEEEEcc
Q 019221 204 ATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCV--YNQNFLEK----ERSDIIITPV 257 (344)
Q Consensus 204 ~~p~~~~g~~~~~~~~g~vi~~~~g~~~i~~sGDt~--~~~~~~~~----~~~Dl~il~~ 257 (344)
+..+-|.. ..|-|+++.. +.+|+|+||-. ++.+.... -.+|+++.+.
T Consensus 155 p~~aGhVl-----gacMf~veia--gv~lLyTGd~sreeDrhl~aae~P~~~~dvli~es 207 (668)
T KOG1137|consen 155 PYHAGHVL-----GACMFMVEIA--GVRLLYTGDYSREEDRHLIAAEMPPTGPDVLITES 207 (668)
T ss_pred eeccchhh-----hheeeeeeec--eEEEEeccccchhhcccccchhCCCCCccEEEEEe
Confidence 87644332 2478999988 58999999964 44555432 2889999885
No 39
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=98.86 E-value=1e-07 Score=99.59 Aligned_cols=201 Identities=10% Similarity=0.115 Sum_probs=119.3
Q ss_pred ceEEEEE--eC-cEEEEEeCCcEEEEccccCCCCCCCcccccccCCccc-CCCCCCCCCCccEEEecCCCCCCCChhhHH
Q 019221 78 VFKLTYL--EG-NSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFL-KSFQLSDLPQVDCLLITQSLDDHCHLKTLK 153 (344)
Q Consensus 78 ~~~it~l--Gh-ss~li~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~-~~~~~~~lp~iD~VlISH~H~DHld~~tl~ 153 (344)
..+|+++ || .|++|+.+++++|||+ |... +.... + ++.+ +-+.-..+. +|+|+|||.|.|| .+++.
T Consensus 439 ~~~v~~lDVGqGdaili~~~~~~iLIDt---G~~~-~~~~~--~-~~~l~p~L~~~Gi~-ID~lilTH~d~DH--iGGl~ 508 (662)
T TIGR00361 439 SWQVDMLDVGQGLAMFIGANGKGILYDT---GEPW-REGSL--G-EKVIIPFLTAKGIK-LEALILSHADQDH--IGGAE 508 (662)
T ss_pred CEEEEEEecCCceEEEEEECCeEEEEeC---CCCC-CCCCc--c-HHHHHHHHHHcCCC-cCEEEECCCchhh--hCcHH
Confidence 5678886 55 5788999999999999 4221 10000 0 1111 112233454 9999999999999 68888
Q ss_pred HhhhcCCCceEEEccchHHHHhhcCCceEEeCCCceEEeCcccCCcEEEEEe-ecCCcCCCCCCCCCeEEEEeCCCceEE
Q 019221 154 PLSKMSPNLKVIATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKAT-AGPVLGPPWQRPENGYLVNSSQGQLTL 232 (344)
Q Consensus 154 ~L~~~~p~~~v~~~~~~~~~l~~~~~~i~~l~~~~~~~~~~~~~~~~~i~~~-p~~~~g~~~~~~~~g~vi~~~~g~~~i 232 (344)
.+.++++-..++ .+.+.. .....+.++..|+.++++ +++++++ |..... ...|..|.++....++.++
T Consensus 509 ~ll~~~~v~~i~-~~~~~~---~~~~~~~~~~~G~~~~~~-----~~~~~vL~P~~~~~--~~~N~~S~vl~i~~~~~~~ 577 (662)
T TIGR00361 509 IILKHHPVKRLV-IPKGFV---EEGVAIEECKRGDVWQWQ-----GLQFHVLSPEAPDP--ASKNNHSCVLWVDDGGNSW 577 (662)
T ss_pred HHHHhCCccEEE-eccchh---hCCCceEecCCCCEEeEC-----CEEEEEECCCCccC--CCCCCCceEEEEEECCeeE
Confidence 888877433454 443321 112345667888888887 7888776 322111 1234445554333235899
Q ss_pred EEcCCCCCcch--hhcc---cCccEEEEccccccCCCcccccCHHHHHHHHHHcCCCEEEEeeeC--CccCccccccccc
Q 019221 233 YYEPHCVYNQN--FLEK---ERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPMKNG--DLDSKGFLASIIQ 305 (344)
Q Consensus 233 ~~sGDt~~~~~--~~~~---~~~Dl~il~~~g~~~~~~~~h~~~eea~~~~~~l~~k~vip~H~~--~f~~~~~~~~~l~ 305 (344)
+++||.....+ +.+. .+.|++.++--|... ..+.+.++.++|+.++-.-.. .|.
T Consensus 578 L~tGD~~~~~E~~l~~~~~~l~~dvLk~~HHGS~~---------Sss~~fl~~v~P~~aiiS~g~~N~yg---------- 638 (662)
T TIGR00361 578 LLTGDLEAEGEQEVMRVFPNIKADVLQVGHHGSKT---------STSEELIQQVQPKVAIISAGRNNRWH---------- 638 (662)
T ss_pred EEecCCCHHHHHHHHhcccCcCccEEEeCCCCCCC---------CChHHHHHhcCCCEEEEECCCCCCCC----------
Confidence 99999976532 2222 267788776533211 123468888999997754321 222
Q ss_pred ccCCHHHHHHHHHh
Q 019221 306 SEGTVESFKELLSK 319 (344)
Q Consensus 306 ~~~~~e~~~~~~~~ 319 (344)
|...|-++++-+.
T Consensus 639 -hP~~~vl~rl~~~ 651 (662)
T TIGR00361 639 -HPHQKVLQRLQRH 651 (662)
T ss_pred -CChHHHHHHHHHC
Confidence 6666666666554
No 40
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=98.85 E-value=5e-08 Score=90.96 Aligned_cols=152 Identities=18% Similarity=0.135 Sum_probs=86.3
Q ss_pred CCccEEEecCCCCCCCChhhHHHhhhcCCCceEEEccchHH-----HHhhcC--CceEEeCCCceEEeCcccCCcEEEEE
Q 019221 132 PQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVIATPNAKT-----LLDPLF--QNVTYVEPGQSSEIEGRNGSKLRVKA 204 (344)
Q Consensus 132 p~iD~VlISH~H~DHld~~tl~~L~~~~p~~~v~~~~~~~~-----~l~~~~--~~i~~l~~~~~~~~~~~~~~~~~i~~ 204 (344)
+.+|+||+||.|+|| +.++..|.+.+ ..++++.+.... .+...+ .........+...++ +++++.
T Consensus 61 ~~idai~~TH~H~DH--i~Gl~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 132 (269)
T COG1235 61 SDLDAILLTHEHSDH--IQGLDDLRRAY-TLPIYVNPGTLRASTSDRLLGGFPYLFRHPFPPFSLPAIG-----GLEVTP 132 (269)
T ss_pred cccCeEEEecccHHh--hcChHHHHHHh-cCCcccccceecccchhhhhccchhhhcCCCCcccccccc-----ceeeec
Confidence 479999999999999 57777777644 334444433211 112221 011111222333343 455544
Q ss_pred eecCCcC------------CC-CCCCCCeEEEEeCCCceEEEEcCCCCCcchhhc-----ccCccEEEEccccccCC--C
Q 019221 205 TAGPVLG------------PP-WQRPENGYLVNSSQGQLTLYYEPHCVYNQNFLE-----KERSDIIITPVIKQLLP--K 264 (344)
Q Consensus 205 ~p~~~~g------------~~-~~~~~~g~vi~~~~g~~~i~~sGDt~~~~~~~~-----~~~~Dl~il~~~g~~~~--~ 264 (344)
.+..|.- .. ....-.||.++... ..+.|.+|+.+.+...+ ....++.+.+. .+.+ +
T Consensus 133 ~~~~hd~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~vay~~Dt~~~~~~~d~~l~~~~~~~~~~~~~--~~~~~gh 208 (269)
T COG1235 133 FPVPHDAIEPVGFVIIRTGRKLHGGTDIGYGLEWRI--GDVAYLTDTELFPSNHDVELLDNGLYPLDIKDR--ILPDPGH 208 (269)
T ss_pred CCCCCccccCCCcccccCcccccccccceeeeeeee--ccEEEccccccCcchhHHHHhcCCccceeeeec--cccccCC
Confidence 3322210 00 01123477766542 47889999986643222 23566665553 2222 2
Q ss_pred cccccCHHHHHHHHHHcCCCEEEEeeeCCcc
Q 019221 265 FTLVSGQEDAVKLAKLLHAKFIVPMKNGDLD 295 (344)
Q Consensus 265 ~~~h~~~eea~~~~~~l~~k~vip~H~~~f~ 295 (344)
...|+..++++++++++++|+++.+|.+...
T Consensus 209 ~~~h~~~~~a~~~~~~~~~~rivLtHls~~~ 239 (269)
T COG1235 209 LSNHLSAEEALELIEKLKPKRLVLTHLSHKN 239 (269)
T ss_pred CCCchhHHHHHHHHHhCCcceEEEEecCCCC
Confidence 3458889999999999999999999998643
No 41
>PRK11539 ComEC family competence protein; Provisional
Probab=98.83 E-value=8.5e-08 Score=101.60 Aligned_cols=181 Identities=12% Similarity=0.126 Sum_probs=107.1
Q ss_pred CCceEEEEE--eC-cEEEEEeCCcEEEEccccCCCCCCCcccccccCCccc-CCCCCCCCCCccEEEecCCCCCCCChhh
Q 019221 76 TDVFKLTYL--EG-NSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFL-KSFQLSDLPQVDCLLITQSLDDHCHLKT 151 (344)
Q Consensus 76 ~~~~~it~l--Gh-ss~li~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~-~~~~~~~lp~iD~VlISH~H~DHld~~t 151 (344)
+...+|+.+ || .+++|+.+|+++|+|+ |... +.... + ++.+ +-+....+ ++|+|+|||.|.|| .++
T Consensus 498 ~~~~~v~~lDVGqG~a~li~~~~~~lLiDt---G~~~-~~~~~--~-~~~i~P~L~~~Gi-~lD~lilSH~d~DH--~GG 567 (755)
T PRK11539 498 EYEWRVDMLDVGHGLAVVIERNGKAILYDT---GNAW-PTGDS--A-QQVIIPWLRWHGL-TPEGIILSHEHLDH--RGG 567 (755)
T ss_pred CCcEEEEEEEccCceEEEEEECCEEEEEeC---CCCC-CCCcc--h-HHHHHHHHHHcCC-CcCEEEeCCCCccc--CCC
Confidence 456788876 66 5778999999999999 4221 10000 0 1111 11233345 58999999999999 588
Q ss_pred HHHhhhcCCCceEEEccchHHHHhhcCCceEEeCCCceEEeCcccCCcEEEEEe-ecCCcCCCCCCCCCeEEEEeCCCce
Q 019221 152 LKPLSKMSPNLKVIATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKAT-AGPVLGPPWQRPENGYLVNSSQGQL 230 (344)
Q Consensus 152 l~~L~~~~p~~~v~~~~~~~~~l~~~~~~i~~l~~~~~~~~~~~~~~~~~i~~~-p~~~~g~~~~~~~~g~vi~~~~g~~ 230 (344)
+..+.+.+|..+++.+.... +..++..|+..+.+ +++++++ |..+..+ ..|..|.++....++.
T Consensus 568 l~~Ll~~~~~~~i~~~~~~~--------~~~~~~~g~~~~~~-----~~~~~vL~P~~~~~~--~~N~~S~Vl~i~~~~~ 632 (755)
T PRK11539 568 LASLLHAWPMAWIRSPLNWA--------NHLPCVRGEQWQWQ-----GLTFSVHWPLEQSND--AGNNDSCVIRVDDGKH 632 (755)
T ss_pred HHHHHHhCCcceeeccCccc--------CcccccCCCeEeEC-----CEEEEEEecCcccCC--CCCCccEEEEEEECCE
Confidence 88888877656665432111 12234557777776 6777666 3222111 2244455554333368
Q ss_pred EEEEcCCCCCcch--hhcc----cCccEEEEccccccCCCcccccCHHHHHHHHHHcCCCEEEEee
Q 019221 231 TLYYEPHCVYNQN--FLEK----ERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPMK 290 (344)
Q Consensus 231 ~i~~sGDt~~~~~--~~~~----~~~Dl~il~~~g~~~~~~~~h~~~eea~~~~~~l~~k~vip~H 290 (344)
+++++||.....+ +.+. .+.|++.++--|.. + .-+.+.++.++|+.++-.-
T Consensus 633 ~~LltGDi~~~~E~~Ll~~~~~~l~~dvL~vpHHGS~----t-----Sss~~fl~~v~P~~aiiS~ 689 (755)
T PRK11539 633 SILLTGDLEAQAEQKLLSRYWQQLAATLLQVPHHGSN----T-----SSSLPFIRAVNGKVALASA 689 (755)
T ss_pred EEEEEeCCChHHHHHHHhcCccCcCCCEEEeCCCCCC----C-----CChHHHHHhcCCCEEEEeC
Confidence 9999999865432 2221 26788877653311 1 1224588888998877543
No 42
>KOG0813 consensus Glyoxylase [General function prediction only]
Probab=98.79 E-value=2.5e-08 Score=91.40 Aligned_cols=132 Identities=15% Similarity=0.224 Sum_probs=81.9
Q ss_pred CCCCccEEEecCCCCCCCChhhHHHhhhcCC-CceEEEccchHHHHhhcCCceEEeCCCceEEeCcccCCcEEEEE--ee
Q 019221 130 DLPQVDCLLITQSLDDHCHLKTLKPLSKMSP-NLKVIATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKA--TA 206 (344)
Q Consensus 130 ~lp~iD~VlISH~H~DHld~~tl~~L~~~~p-~~~v~~~~~~~~~l~~~~~~i~~l~~~~~~~~~~~~~~~~~i~~--~p 206 (344)
+-..+++||.||.|+|| .+++..|.+.++ ++.+|.... +....+ -..++.++.+.++ +++|++ ||
T Consensus 48 ~~~~l~~Il~THhH~DH--sGGn~~i~~~~~~~~~v~g~~~--~r~~~i---~~~~~~~e~~~~~-----g~~v~~l~TP 115 (265)
T KOG0813|consen 48 ENRRLTAILTTHHHYDH--SGGNEDIKREIPYDIKVIGGAD--DRIPGI---TRGLKDGETVTVG-----GLEVRCLHTP 115 (265)
T ss_pred ccCceeEEEeccccccc--cCcHHHHHhhccCCcEEecCCh--hcCccc---cccCCCCcEEEEC-----CEEEEEEeCC
Confidence 44589999999999999 578888887643 677776641 111111 1237888999998 555554 56
Q ss_pred cCCcCCCCCCCCCeEEEEeCCCceEEEEcCCCCCcchhhcccCccEEEEccccccCCCcccccCHHHHHHHHHHcCCC-E
Q 019221 207 GPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQNFLEKERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAK-F 285 (344)
Q Consensus 207 ~~~~g~~~~~~~~g~vi~~~~g~~~i~~sGDt~~~~~~~~~~~~Dl~il~~~g~~~~~~~~h~~~eea~~~~~~l~~k-~ 285 (344)
++..+ ..+|.+.... +.+.+|+||+-+.. .| |.+... +++....+++.+..|+.+ +
T Consensus 116 gHT~~------hi~~~~~~~~-~e~~iFtGDtlf~~-------------Gc-G~~FEg--t~~~M~~sl~~l~~L~~~t~ 172 (265)
T KOG0813|consen 116 GHTAG------HICYYVTEST-GERAIFTGDTLFGA-------------GC-GRFFEG--TAEQMDSSLNELIALPDDTR 172 (265)
T ss_pred CccCC------cEEEEeecCC-CCCeEEeCCceeec-------------Cc-cchhcC--CHHHHHHhHHHhhcCCCCce
Confidence 55332 3677777411 35899999986542 12 322211 111224455557778777 8
Q ss_pred EEEeeeCCccC
Q 019221 286 IVPMKNGDLDS 296 (344)
Q Consensus 286 vip~H~~~f~~ 296 (344)
++|-|--+-+.
T Consensus 173 iypGHeYt~~n 183 (265)
T KOG0813|consen 173 IYPGHEYTKSN 183 (265)
T ss_pred EccCccccccc
Confidence 99999844443
No 43
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=98.72 E-value=4.9e-07 Score=84.85 Aligned_cols=182 Identities=13% Similarity=0.128 Sum_probs=109.8
Q ss_pred eEEEEE--eC-cEEEEEeCCcEEEEccccCCCCCCCcccccccCCcccCCCCCCCCCCccEEEecCCCCCCCChhhHHHh
Q 019221 79 FKLTYL--EG-NSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPL 155 (344)
Q Consensus 79 ~~it~l--Gh-ss~li~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~L 155 (344)
.++..+ |+ .+++++.++.++|+|+..+ .+. +..++-+.-..+.+||.+++||.|.|| ++.+..+
T Consensus 44 ~~~~~lDvGqg~a~li~~~~~~~l~dtg~~-~~~----------~~iip~Lk~~GV~~iD~lIlTH~d~DH--iGg~~~v 110 (293)
T COG2333 44 WKVHMLDVGQGLATLIRSEGKTILYDTGNS-MGQ----------DVIIPYLKSLGVRKLDQLILTHPDADH--IGGLDEV 110 (293)
T ss_pred ceEEEEEcCCCeEEEEeeCCceEEeecCcc-cCc----------eeehhhHhHcCCccccEEEeccCCccc--cCCHHHH
Confidence 455554 55 4899999999999999331 011 111222333455689999999999999 6888888
Q ss_pred hhcC--CCceEEEccchHH--HHhhcCCceEEeCCCceEEeCcccCCcEEEEEe-ecCCcCCCCCCCCCeEEEEeCCCce
Q 019221 156 SKMS--PNLKVIATPNAKT--LLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKAT-AGPVLGPPWQRPENGYLVNSSQGQL 230 (344)
Q Consensus 156 ~~~~--p~~~v~~~~~~~~--~l~~~~~~i~~l~~~~~~~~~~~~~~~~~i~~~-p~~~~g~~~~~~~~g~vi~~~~g~~ 230 (344)
.+.+ |.+-+........ .+++.+..+..+.-|+.++++ ++.+.++ |....++ ..|..+.++....++.
T Consensus 111 l~~~~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~-----~~~f~vl~P~~~~~~--~~N~~S~Vl~v~~g~~ 183 (293)
T COG2333 111 LKTIKVPELWIYAGSDSTSTFVLRDAGIPVRSCKAGDSWQWG-----GVVFQVLSPVGGVSD--DLNNDSCVLRVTFGGN 183 (293)
T ss_pred HhhCCCCcEEEeCCCCccchhhhhhcCCceeccccCceEEEC-----CeEEEEEcCCccccc--cccCcceEEEEEeCCe
Confidence 8743 2222221111111 234445667888889999997 6777655 3222222 2344455654433368
Q ss_pred EEEEcCCCCCcch--hhccc---CccEEEEccccccCCCcccccCHHHHHHHHHHcCCCEEEEe
Q 019221 231 TLYYEPHCVYNQN--FLEKE---RSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPM 289 (344)
Q Consensus 231 ~i~~sGDt~~~~~--~~~~~---~~Dl~il~~~g~~~~~~~~h~~~eea~~~~~~l~~k~vip~ 289 (344)
+++++||..-..+ +++.+ ..|++-++--|. .-.....+++.++||+.+..
T Consensus 184 s~LlTGD~e~~~E~~l~~~~~~l~~dVLkV~HHGS---------~tSss~~Fl~~v~Pk~AliS 238 (293)
T COG2333 184 SFLLTGDLEEKGEKLLKKYGPDLRADVLKVGHHGS---------KTSSSLAFLEAVKPKVALIS 238 (293)
T ss_pred eEEEecCCCchhHHHHHhhCCCccceEEEeccCCc---------cccCcHHHHHhcCCcEEEEE
Confidence 9999999864433 22222 466666654232 12344568888999986644
No 44
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=98.71 E-value=3.6e-08 Score=89.09 Aligned_cols=131 Identities=22% Similarity=0.263 Sum_probs=76.9
Q ss_pred CcEEEEEeCC-cEEEEccccCCCCCCCcccccccCCcccCCCCCCCCCCccEEEecCCCCCCCChhhHHHhhhcCCCceE
Q 019221 86 GNSWLWDLDG-VKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKV 164 (344)
Q Consensus 86 hss~li~~~g-~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~L~~~~p~~~v 164 (344)
.+++++..++ ..+|||+.+..... ..+ ...+..... +|++|++||.|+|| .+.+..+.+..+.+++
T Consensus 25 ~~~~~~~~~~~~~~liD~G~~~~~~---~~~-------~~~l~~~~~-~i~~vilTH~H~DH--~gg~~~~~~~~~~~~~ 91 (252)
T COG0491 25 NSVYLLVDGEGGAVLIDTGLGDADA---EAL-------LEALAALGL-DVDAILLTHGHFDH--IGGAAVLKEAFGAAPV 91 (252)
T ss_pred ccEEEEEcCCCceEEEeCCCCchHH---HHH-------HHHHHHcCC-ChheeeecCCchhh--hccHHHHHhhcCCceE
Confidence 3445555544 89999995432100 011 011111112 79999999999999 5888888776423666
Q ss_pred EEccchHHHHhh------------c----CCceEEeCCCceEEeCcccCCcEEEEEeecCCcCCCCCCCCCeEEEEeCCC
Q 019221 165 IATPNAKTLLDP------------L----FQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQG 228 (344)
Q Consensus 165 ~~~~~~~~~l~~------------~----~~~i~~l~~~~~~~~~~~~~~~~~i~~~p~~~~g~~~~~~~~g~vi~~~~g 228 (344)
+..+........ . ......+..++.+.++ +..+++..+||+..| ..+|.++..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~tpGHT~g------~~~~~~~~~-- 160 (252)
T COG0491 92 IAPAEVPLLLREEILRKAGVTAEAYAAPGASPLRALEDGDELDLG---GLELEVLHTPGHTPG------HIVFLLEDG-- 160 (252)
T ss_pred EccchhhhhhhcccccccccccccCCCCccccceecCCCCEEEec---CeEEEEEECCCCCCC------eEEEEECCc--
Confidence 333332221111 1 0223445567778886 235888888887543 357777654
Q ss_pred ceEEEEcCCCCCcc
Q 019221 229 QLTLYYEPHCVYNQ 242 (344)
Q Consensus 229 ~~~i~~sGDt~~~~ 242 (344)
+++|+||..+..
T Consensus 161 --~~l~~gD~~~~~ 172 (252)
T COG0491 161 --GVLFTGDTLFAG 172 (252)
T ss_pred --cEEEecceeccC
Confidence 499999987664
No 45
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]
Probab=98.03 E-value=4.2e-05 Score=77.45 Aligned_cols=149 Identities=20% Similarity=0.274 Sum_probs=97.9
Q ss_pred cEEEEEeCCcEEEEccccCCCCCCCcccccccCCcccCCCCCCCCCCccEEEecCCCCCCCChhhHHHhhhcC-CCceEE
Q 019221 87 NSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMS-PNLKVI 165 (344)
Q Consensus 87 ss~li~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~L~~~~-p~~~v~ 165 (344)
=|+++|++|.+|||||.|... |..+.+ +++ ...++.||+||+||-..=| +++|..+..++ =+++||
T Consensus 16 ~cyllqiD~~~iLiDcGwd~~--f~~~~i--------~~l-~~~i~~iDaILLShpd~~h--lGaLpY~~~k~gl~~~VY 82 (764)
T KOG1135|consen 16 LCYLLQIDGVRILIDCGWDES--FDMSMI--------KEL-KPVIPTIDAILLSHPDILH--LGALPYAVGKLGLNAPVY 82 (764)
T ss_pred ceEEEEEcCeEEEEeCCCcch--hccchh--------hhh-hcccccccEEEecCCChHH--hccchhhHhhCCccceEE
Confidence 489999999999999988532 223332 122 2346799999999988888 57787776543 257888
Q ss_pred EccchHH--------HHhh-----------------cCCceEEeCCCceEEeCcccCCcEEEEEeecCCcCCCCCCCCCe
Q 019221 166 ATPNAKT--------LLDP-----------------LFQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENG 220 (344)
Q Consensus 166 ~~~~~~~--------~l~~-----------------~~~~i~~l~~~~~~~~~~~~~~~~~i~~~p~~~~g~~~~~~~~g 220 (344)
++-...+ .+.+ .|++|+++.-.|.+.+.++ +.+++|++.++-|+- ..+-
T Consensus 83 AT~PV~~mG~m~myD~~~S~~~~~df~l~sldDvd~aFd~I~~LKYsQ~v~L~gk-~~Gl~itaynAGhmi-----GGsI 156 (764)
T KOG1135|consen 83 ATLPVIKMGQMFMYDLYRSHGNVGDFDLFSLDDVDAAFDKIIQLKYSQPVALKGK-GSGLTITAYNAGHMI-----GGSI 156 (764)
T ss_pred EecchhhhhhhhHHHHHhcccccccccccchhhhHHHHhheeeeeccceEEeccc-cCceEEeeecCCCcc-----CceE
Confidence 7755422 2222 1368999999999888633 358999998876531 0134
Q ss_pred EEEEeCCCceEEEEcCCCCCcc--h-----hhcccCccEEEEc
Q 019221 221 YLVNSSQGQLTLYYEPHCVYNQ--N-----FLEKERSDIIITP 256 (344)
Q Consensus 221 ~vi~~~~g~~~i~~sGDt~~~~--~-----~~~~~~~Dl~il~ 256 (344)
|-|... +.+|.|+-|-.... | |-...++-++|..
T Consensus 157 WkI~k~--~E~ivYavd~NHkKe~HLNG~~l~~l~RPsllITd 197 (764)
T KOG1135|consen 157 WKISKV--GEDIVYAVDFNHKKERHLNGCSLSGLNRPSLLITD 197 (764)
T ss_pred EEEEec--CceEEEEEecccchhcccCCccccccCCcceEEec
Confidence 556554 36899988866432 1 1123477777754
No 46
>KOG0814 consensus Glyoxylase [General function prediction only]
Probab=97.73 E-value=2.7e-05 Score=66.71 Aligned_cols=116 Identities=25% Similarity=0.341 Sum_probs=67.6
Q ss_pred EEEEe--CCcEEEEccccCCCCCCCcccccccCCcccCCCCCCCCC-CccEEEecCCCCCCCChhhHHHhhhcCCCceEE
Q 019221 89 WLWDL--DGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLP-QVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVI 165 (344)
Q Consensus 89 ~li~~--~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp-~iD~VlISH~H~DHld~~tl~~L~~~~p~~~v~ 165 (344)
||+-. .|+.+|||||+. .++ |..+- +.||. +.-+-+=||.|.||. -.-..|+..+|.++-+
T Consensus 24 Yll~d~~~~~AviIDPV~e-t~~-----------RD~ql--ikdLgl~LiYa~NTH~HADHi--TGtg~Lkt~~pg~kSV 87 (237)
T KOG0814|consen 24 YLLGDHKTGKAVIIDPVLE-TVS-----------RDAQL--IKDLGLDLIYALNTHVHADHI--TGTGLLKTLLPGCKSV 87 (237)
T ss_pred EEeeeCCCCceEEecchhh-ccc-----------chHHH--HHhcCceeeeeecceeecccc--cccchHHHhcccHHHH
Confidence 45543 678999999985 232 11111 12331 345778899999996 3334444433444433
Q ss_pred EccchHHHHhhcCCceEEeCCCceEEeCcccCCcEEEEEeecCCcCCCCCCCCCeEEEEeCCCceEEEEcCCCC
Q 019221 166 ATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCV 239 (344)
Q Consensus 166 ~~~~~~~~l~~~~~~i~~l~~~~~~~~~~~~~~~~~i~~~p~~~~g~~~~~~~~g~vi~~~~g~~~i~~sGDt~ 239 (344)
++.... .+.-.-++.|+.++++ +-.+++.++||+..|. .-||+.. .+..|+||+-
T Consensus 88 is~~SG------akAD~~l~~Gd~i~~G---~~~le~ratPGHT~GC------~TyV~~d----~~~aFTGDal 142 (237)
T KOG0814|consen 88 ISSASG------AKADLHLEDGDIIEIG---GLKLEVRATPGHTNGC------VTYVEHD----LRMAFTGDAL 142 (237)
T ss_pred hhhccc------cccccccCCCCEEEEc---cEEEEEecCCCCCCce------EEEEecC----cceeeeccee
Confidence 332210 1222457789999998 3457778889875432 3455543 4788999863
No 47
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=97.68 E-value=0.0017 Score=62.17 Aligned_cols=189 Identities=12% Similarity=0.046 Sum_probs=102.7
Q ss_pred CccEEEecCCCCCCCChhhHHH----hhhc-CCCceEEEccchHHHHhhc-CC-------------------ceEEeCCC
Q 019221 133 QVDCLLITQSLDDHCHLKTLKP----LSKM-SPNLKVIATPNAKTLLDPL-FQ-------------------NVTYVEPG 187 (344)
Q Consensus 133 ~iD~VlISH~H~DHld~~tl~~----L~~~-~p~~~v~~~~~~~~~l~~~-~~-------------------~i~~l~~~ 187 (344)
.|...||||.|.||+ .++-- +... ..+-++|+.+.+.+.|+.. |. +...+..+
T Consensus 79 ~I~~ylItH~HLDHi--~gLvinsp~~~~~~~~~K~i~gl~~ti~alk~hiFN~~iWPNl~~~~~~~~~~~~~~~~l~~~ 156 (335)
T PF02112_consen 79 HIKGYLITHPHLDHI--AGLVINSPEDYLPNSSPKTIYGLPSTIEALKNHIFNDIIWPNLSDEGEGDYLYKYRYFDLSPG 156 (335)
T ss_pred hhheEEecCCchhhH--HHHHhcCcccccccCCCCcEEECHHHHHHHHHcccCCccCCCCCCcCcccceeeeeeeecccc
Confidence 688999999999994 55431 1110 0144688888887766642 11 22334444
Q ss_pred ceEEeCcc--------cCCcEEEEEeecCCcCCCCC-CCCCeEEEEeCCCceEEEEcCCCCCcch--------hhc----
Q 019221 188 QSSEIEGR--------NGSKLRVKATAGPVLGPPWQ-RPENGYLVNSSQGQLTLYYEPHCVYNQN--------FLE---- 246 (344)
Q Consensus 188 ~~~~~~~~--------~~~~~~i~~~p~~~~g~~~~-~~~~g~vi~~~~g~~~i~~sGDt~~~~~--------~~~---- 246 (344)
+...+... ......|+++|-.|...... -..++|+|+....+..|+|-||++.+.- +.+
T Consensus 157 ~~~~~~~~~~s~~~~~~~~~~~v~~~~l~H~~~~~~~~~SsAfli~~~~t~~~il~fGD~e~Ds~s~~~~~~~iW~~~ap 236 (335)
T PF02112_consen 157 ELIPLNNTTLSVIPNEFPNSSSVTPFPLSHGNSVSSPVYSSAFLIRDNITGDEILFFGDTEPDSVSKSPRNQKIWRYAAP 236 (335)
T ss_pred ceeeccccccccccccccccccceeeecCCCCcccCCCcceEEEEEeCCCCCEEEEEeCCCCCccccCchHHHHHHHHHh
Confidence 33332200 00123334455444321100 0146899987653478999999987521 111
Q ss_pred ---ccCccEEEEccccccCC-Cc--ccccCHHHHHHHHHHcCCC-----------EEEEeeeCCccCcccccccccccCC
Q 019221 247 ---KERSDIIITPVIKQLLP-KF--TLVSGQEDAVKLAKLLHAK-----------FIVPMKNGDLDSKGFLASIIQSEGT 309 (344)
Q Consensus 247 ---~~~~Dl~il~~~g~~~~-~~--~~h~~~eea~~~~~~l~~k-----------~vip~H~~~f~~~~~~~~~l~~~~~ 309 (344)
.+...-.++||.-.-.. .- .-|++|...++-++.|..+ .+|-+|--.-. ....+
T Consensus 237 ~I~~~~LkaI~IEcS~~~~~~d~~LyGHLtP~~Li~EL~~L~~~~~~~~~~L~gL~VIItHIK~~~---------~~~~d 307 (335)
T PF02112_consen 237 KIASGKLKAIFIECSYPNSQPDSQLYGHLTPKHLIEELKVLASKVGQTSPPLKGLNVIITHIKPSL---------NDGPD 307 (335)
T ss_pred hccccccCEEEEEeCCCCCCCchHhhccCCHHHHHHHHHHHHhccccccCCCCCCeEEEEEeCCcc---------cCCCC
Confidence 24778889998421111 11 1299998877766665321 26777864311 11112
Q ss_pred -----HHHHHHHHHhcCCCCeeeccCCC
Q 019221 310 -----VESFKELLSKELPDAQLLEPTPG 332 (344)
Q Consensus 310 -----~e~~~~~~~~~~~~~~~~~~~~G 332 (344)
.+.++++.++.+.+++|+.|.-|
T Consensus 308 pr~~Il~il~qL~~~n~LGv~fii~~QG 335 (335)
T PF02112_consen 308 PRDVILEILRQLAEENNLGVNFIIPEQG 335 (335)
T ss_pred hHHHHHHHHHHHHhccCCceEEEEcCCC
Confidence 24455555556677999888765
No 48
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair]
Probab=97.54 E-value=0.00049 Score=68.23 Aligned_cols=131 Identities=15% Similarity=0.133 Sum_probs=89.9
Q ss_pred CccEEEecCCCCCCCChhhHHHhhhcCCCceEEEccchHHHHhhc----CCceEEeCCCceEEeCcccCCcEEEEEeecC
Q 019221 133 QVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVIATPNAKTLLDPL----FQNVTYVEPGQSSEIEGRNGSKLRVKATAGP 208 (344)
Q Consensus 133 ~iD~VlISH~H~DHld~~tl~~L~~~~p~~~v~~~~~~~~~l~~~----~~~i~~l~~~~~~~~~~~~~~~~~i~~~p~~ 208 (344)
.+-+=++||.|.|| +-.|..-.. .-++|+++.+++++... ...++.++-++.+.+. ++.++++++.
T Consensus 112 ~~s~yFLsHFHSDH--y~GL~~sW~---~p~lYCS~ita~Lv~~~~~v~~~~i~~l~l~~~~~i~-----~~~vt~ldAn 181 (481)
T KOG1361|consen 112 GCSAYFLSHFHSDH--YIGLTKSWS---HPPLYCSPITARLVPLKVSVTKQSIQALDLNQPLEIP-----GIQVTLLDAN 181 (481)
T ss_pred ccceeeeecccccc--ccccccccc---CCcccccccchhhhhhhcccChhhceeecCCCceeec-----ceEEEEeccc
Confidence 56788999999999 455433332 33489999998865543 2568888889999997 7999999998
Q ss_pred CcCCCCCCCCCeEEEEeCCCceEEEEcCCCCCcchhhc------ccCccEEEEccccccCCCcccccCHHHHHHHHHHc
Q 019221 209 VLGPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQNFLE------KERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLL 281 (344)
Q Consensus 209 ~~g~~~~~~~~g~vi~~~~g~~~i~~sGDt~~~~~~~~------~~~~Dl~il~~~g~~~~~~~~h~~~eea~~~~~~l 281 (344)
|.. ....|+++... +.++|++||..+...+.+ ...+|.+.+++ -.-+|.+.. -+.+++++.+.++
T Consensus 182 HCP-----Ga~mf~F~~~~-~~~~lhtGDFR~s~~m~~~p~~~~~~~i~~lyLDt-Tycnp~y~F-psq~esvq~v~~~ 252 (481)
T KOG1361|consen 182 HCP-----GAVMFLFELSF-GPCILHTGDFRASADMSKEPALTLEQTIDILYLDT-TYCNPKYDF-PSQEESVQEVVDV 252 (481)
T ss_pred cCC-----CceEEEeecCC-CceEEecCCcccChhhhhChHHhcCCccceEEEee-cccCCCCCC-ccHHHHHHHHHHH
Confidence 742 12467777765 379999999988765443 13889999987 223332221 1345666655544
No 49
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=97.48 E-value=0.00062 Score=58.94 Aligned_cols=155 Identities=15% Similarity=0.216 Sum_probs=79.9
Q ss_pred eCcEEEEEeCCcEEEEccccCCCCCC-CcccccccCCcccCCCCCCCCCCccEEEecCCCCCCCChhhHHHhhhcCCCce
Q 019221 85 EGNSWLWDLDGVKVLVDPILVGNLDF-GIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLK 163 (344)
Q Consensus 85 Ghss~li~~~g~~ILiDP~~~g~~s~-p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~L~~~~p~~~ 163 (344)
+-+|++....+.+||||| -+.+- -..| +..+..+++|+||| .|| ......+++.+ +++
T Consensus 22 dfng~~~~~p~GnilIDP---~~ls~~~~~~-------------l~a~ggv~~IvLTn--~dH--vR~A~~ya~~~-~a~ 80 (199)
T PF14597_consen 22 DFNGHAWRRPEGNILIDP---PPLSAHDWKH-------------LDALGGVAWIVLTN--RDH--VRAAEDYAEQT-GAK 80 (199)
T ss_dssp EEEEEEE--TT--EEES--------HHHHHH-------------HHHTT--SEEE-SS--GGG---TTHHHHHHHS---E
T ss_pred CceeEEEEcCCCCEEecC---ccccHHHHHH-------------HHhcCCceEEEEeC--Chh--HhHHHHHHHHh-CCe
Confidence 456788888889999999 32220 0111 23345889999997 589 57888888887 899
Q ss_pred EEEccchHHHHhhcCCceEEeCCCceEEeCcccCCcEEEEEeecCCcCCCCCCCCCeEEEEeCCCceEEEEcCCCCCcch
Q 019221 164 VIATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQN 243 (344)
Q Consensus 164 v~~~~~~~~~l~~~~~~i~~l~~~~~~~~~~~~~~~~~i~~~p~~~~g~~~~~~~~g~vi~~~~g~~~i~~sGDt~~~~~ 243 (344)
++++......+.- .--..++.|+++ + +++++..++++++. .+..++++ .+++++||...+.
T Consensus 81 i~~p~~d~~~~p~--~~D~~l~dge~i-~-----~g~~vi~l~G~ktp-----GE~ALlle-----d~vLi~GDl~~~~- 141 (199)
T PF14597_consen 81 IYGPAADAAQFPL--ACDRWLADGEEI-V-----PGLWVIHLPGSKTP-----GELALLLE-----DRVLITGDLLRSH- 141 (199)
T ss_dssp EEEEGGGCCC-SS----SEEE-TT-BS-S-----TTEEEEEE-SSSST-----TEEEEEET-----TTEEEESSSEEBS-
T ss_pred eeccHHHHhhCCC--CCccccccCCCc-c-----CceEEEEcCCCCCC-----ceeEEEec-----cceEEecceeeec-
Confidence 9988776431110 111456667632 2 38999999986421 12344443 2699999954331
Q ss_pred hhcccCccEEEEccccccCCCcccccCHHHHHHHHHHc----CCCEEEEeee
Q 019221 244 FLEKERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLL----HAKFIVPMKN 291 (344)
Q Consensus 244 ~~~~~~~Dl~il~~~g~~~~~~~~h~~~eea~~~~~~l----~~k~vip~H~ 291 (344)
.+-++.++|- ..| +++.++.+.++.| +-+.+++.|.
T Consensus 142 ----~~g~l~lLpd-~k~-------~d~~~a~~sl~RLa~~~~fe~lLvGdG 181 (199)
T PF14597_consen 142 ----PAGSLSLLPD-EKL-------YDPTEARASLRRLAAYPDFEWLLVGDG 181 (199)
T ss_dssp ----STTS-EE--G-GG--------S-HHHHHHHHHHHHT-TT--EEEESBB
T ss_pred ----CCCCeEECCh-HHc-------CCHHHHHHHHHHHhccccccEEeecCC
Confidence 2346666664 211 2677777766665 5677888774
No 50
>KOG4736 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.07 E-value=0.021 Score=53.04 Aligned_cols=161 Identities=19% Similarity=0.147 Sum_probs=90.4
Q ss_pred EeCcEEEEEeCCcEEEEccccCCCCCCCcccccccCCcccCCCCCCCCCCccEEEecCCCCCCCChhhHHHhhhcCCCce
Q 019221 84 LEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLK 163 (344)
Q Consensus 84 lGhss~li~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~L~~~~p~~~ 163 (344)
.|.+ .++..++..+++|..++ ..+ ++ .+.++ .||.|+|||.|.+|+ +.+..+.. .+
T Consensus 94 ~~~~-tl~~d~~~v~v~~~gls-~la----------k~---~vt~d---~i~~vv~t~~~~~hl--gn~~~f~~----sp 149 (302)
T KOG4736|consen 94 QGQI-TLVVDGGDVVVVDTGLS-VLA----------KE---GVTLD---QIDSVVITHKSPGHL--GNNNLFPQ----SP 149 (302)
T ss_pred hccc-ceeecCCceEEEecCCc-hhh----------hc---CcChh---hcceeEEeccCcccc--cccccccC----CH
Confidence 3434 45666788899999554 111 11 23344 789999999999996 44433332 22
Q ss_pred EEEccchHHHHhhcCCc--eEEeCCCceEEeCcccCCcEEEEEeecCCcCCCCCCCCCeEEEEeCCCceEEEEcCCCCCc
Q 019221 164 VIATPNAKTLLDPLFQN--VTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCVYN 241 (344)
Q Consensus 164 v~~~~~~~~~l~~~~~~--i~~l~~~~~~~~~~~~~~~~~i~~~p~~~~g~~~~~~~~g~vi~~~~g~~~i~~sGDt~~~ 241 (344)
++. .-++..+.+ -++++....+++. .++.|..+||+... ..+.++...+...+++++||....
T Consensus 150 ~l~-----~s~e~~gr~~~pt~l~e~~~~~l~----~~~~V~~TpGht~~------~isvlv~n~~~~GTv~itGDLf~~ 214 (302)
T KOG4736|consen 150 ILY-----HSMEYIGRHVTPTELDERPYLKLS----PNVEVWKTPGHTQH------DISVLVHNVDLYGTVAITGDLFPR 214 (302)
T ss_pred HHh-----hhhhhcCCccChhhhccCCccccC----CceeEeeCCCCCCc------ceEEEEEeecccceEEEEeecccC
Confidence 211 112222222 2456777778886 58999999987321 235556544434699999997544
Q ss_pred chhhcccCccEEEEccccccCCCcccccCHHHHHHHHHH----cCCCEEEEeeeCCccC
Q 019221 242 QNFLEKERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKL----LHAKFIVPMKNGDLDS 296 (344)
Q Consensus 242 ~~~~~~~~~Dl~il~~~g~~~~~~~~h~~~eea~~~~~~----l~~k~vip~H~~~f~~ 296 (344)
.+-.. ..|.++.+. + .++.+++.=.. .=|+.++|.|...|..
T Consensus 215 ~~dld--e~d~i~~~e-~----------s~d~~~kr~~r~~~v~l~D~ivpgHg~~f~v 260 (302)
T KOG4736|consen 215 EEDLD--EKDDIMSQE-G----------SEDNAAKRQSRNRYVCLADWIVPGHGPPFRV 260 (302)
T ss_pred Ccccc--chhhhhhhc-c----------CCchhhhhhhhhcEEEEeeeeecCCCCceee
Confidence 32211 233222222 2 12222222111 1378899999988875
No 51
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=92.83 E-value=4 Score=37.99 Aligned_cols=189 Identities=13% Similarity=0.006 Sum_probs=99.5
Q ss_pred CCccEEEecCCCCCCCChhhH---HHhhhcCCCceEEEccchHHHHhhc-C---------------CceEEeCCCceEEe
Q 019221 132 PQVDCLLITQSLDDHCHLKTL---KPLSKMSPNLKVIATPNAKTLLDPL-F---------------QNVTYVEPGQSSEI 192 (344)
Q Consensus 132 p~iD~VlISH~H~DHld~~tl---~~L~~~~p~~~v~~~~~~~~~l~~~-~---------------~~i~~l~~~~~~~~ 192 (344)
..|.--+|||.|.||.. +.+ ....++. +-++|..+.+.+.|++. + -+...+++-+...+
T Consensus 111 Q~I~~y~ITH~HLDHIs-GlVinSp~~~~qk-kkTI~gl~~tIDvL~khvFN~lvWP~lt~~gs~~~~~qvv~P~~~~sl 188 (356)
T COG5212 111 QSINSYFITHAHLDHIS-GLVINSPDDSKQK-KKTIYGLADTIDVLRKHVFNWLVWPNLTDSGSGTYRMQVVRPAQSLSL 188 (356)
T ss_pred hhhhheEeccccccchh-ceeecCccccccC-CceEEechhHHHHHHHHhhcccccCCcccccCceEEEEEeChhHeeee
Confidence 36888899999999962 211 1222222 44688888887766653 1 13455555555444
Q ss_pred CcccCCcEEEEEeecCCcCCCCCC-C-CCeEEEEeCCCceEEEEcCCCCCcchhhc-------------c--cCccEEEE
Q 019221 193 EGRNGSKLRVKATAGPVLGPPWQR-P-ENGYLVNSSQGQLTLYYEPHCVYNQNFLE-------------K--ERSDIIIT 255 (344)
Q Consensus 193 ~~~~~~~~~i~~~p~~~~g~~~~~-~-~~g~vi~~~~g~~~i~~sGDt~~~~~~~~-------------~--~~~Dl~il 255 (344)
. -..+++..+|.+|.. .+.. . ...|++.....+.-+.+.||...++.-.+ + .+..=.++
T Consensus 189 t---~t~l~~~pfpv~Hg~-ktG~p~ySs~~lfr~nkS~~~f~~fGDvepD~vese~ll~~~Wr~~ae~I~q~~Lkgili 264 (356)
T COG5212 189 T---LTRLTGEPFPVSHGK-KTGSPSYSSMLLFRSNKSNEFFAYFGDVEPDDVESEKLLDTVWRKLAEKITQQQLKGILI 264 (356)
T ss_pred e---eeeecceeeeccCCc-ccCCcccceEEEEecCCCcceEEEecCCCcchhhhhHHHHHHHHHHHHhhhHHhhCceEE
Confidence 3 013455566655421 1111 1 23455555422356777799987632111 0 14445677
Q ss_pred ccccccCCCc---ccccCHHHHHHHHHHc----------CCCEEEEeeeCCccCcccccccccccCC-----HHHHHHHH
Q 019221 256 PVIKQLLPKF---TLVSGQEDAVKLAKLL----------HAKFIVPMKNGDLDSKGFLASIIQSEGT-----VESFKELL 317 (344)
Q Consensus 256 ~~~g~~~~~~---~~h~~~eea~~~~~~l----------~~k~vip~H~~~f~~~~~~~~~l~~~~~-----~e~~~~~~ 317 (344)
+|.-.-.+.- .-||.|.-.+.-+..| +.=.++-+|.-.-.. ...+ .|+++-+.
T Consensus 265 EcS~P~~~~~~~LfGH~~P~~L~nEL~~L~~l~~s~~~l~gL~vviTHiKs~p~---------q~~~pr~~ILeeL~fLa 335 (356)
T COG5212 265 ECSYPNDVADNKLFGHMTPTWLLNELKKLEQLSGSGQPLKGLPVVITHIKSSPQ---------QGQDPRKLILEELQFLA 335 (356)
T ss_pred EecCCCCCChhHhhcccChHHHHHHHHHHHHHhccCCCCCCccEEEEeccCccc---------ccCCHHHHHHHHHHHHH
Confidence 7732222211 2388886665544433 223366677643221 1221 25555444
Q ss_pred HhcCC-CCeeeccCCCCeE
Q 019221 318 SKELP-DAQLLEPTPGEPL 335 (344)
Q Consensus 318 ~~~~~-~~~~~~~~~Ge~~ 335 (344)
++.+. +++|.++.-|++.
T Consensus 336 e~~nl~~~~f~i~~~G~~~ 354 (356)
T COG5212 336 EQGNLMGIEFIIMEQGDSQ 354 (356)
T ss_pred hcCCccceEEEeeeccccc
Confidence 45443 4789998888864
No 52
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=85.74 E-value=6.1 Score=40.22 Aligned_cols=60 Identities=10% Similarity=0.088 Sum_probs=44.7
Q ss_pred cccCHHHHHHHHHHcCCCEEEEeeeCCccCcccccccccccCCHHHHHHHHHh----cCCCCeeeccCCCCeEEcCCC
Q 019221 267 LVSGQEDAVKLAKLLHAKFIVPMKNGDLDSKGFLASIIQSEGTVESFKELLSK----ELPDAQLLEPTPGEPLEIPAP 340 (344)
Q Consensus 267 ~h~~~eea~~~~~~l~~k~vip~H~~~f~~~~~~~~~l~~~~~~e~~~~~~~~----~~~~~~~~~~~~Ge~~~l~~~ 340 (344)
.|.+..+..+++++++|+.+|.+|...-. -..++..+.+ .+.++.+.+|+-+|.+++.-+
T Consensus 397 Ahvdy~q~s~fi~~i~~~~lilVHGE~ne--------------M~rLKs~L~~~f~d~kv~i~v~tprn~e~v~l~f~ 460 (668)
T KOG1137|consen 397 AHVDYLQNSEFIADITPPHLILVHGEANE--------------MMRLKSALEAAFRDGKVPIDVSTPRNCEDVELYFP 460 (668)
T ss_pred echhhhhhHHHHHHhCCCeEEEEecccch--------------hHHHHHHHHHHhccCCCcceecCCccceEeeeecC
Confidence 48899999999999999999999975322 2334444443 334688899999999988644
No 53
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=85.53 E-value=1.5 Score=43.54 Aligned_cols=62 Identities=24% Similarity=0.318 Sum_probs=46.9
Q ss_pred CcccccCHHHHHHHHHHcCCCEEEEeeeCCccCcccccccccccCCHHHHHHHHHhcCC-CCeeeccCCCCeEEcCC
Q 019221 264 KFTLVSGQEDAVKLAKLLHAKFIVPMKNGDLDSKGFLASIIQSEGTVESFKELLSKELP-DAQLLEPTPGEPLEIPA 339 (344)
Q Consensus 264 ~~~~h~~~eea~~~~~~l~~k~vip~H~~~f~~~~~~~~~l~~~~~~e~~~~~~~~~~~-~~~~~~~~~Ge~~~l~~ 339 (344)
++..|-+.+|-.++++.++||++||+|... . ....+.+++++.|. +.+++.|+-|+.+.+.+
T Consensus 357 h~SgHa~~~dl~~~i~~~~Pk~~ipvHge~-~-------------~~~~~~~~a~~~g~~~~~~~~~~nG~~~~~~~ 419 (422)
T TIGR00649 357 HVSGHASQEDHKLLLRLLKPKYIIPVHGEY-R-------------MLINHTKLAEEEGYPGENIFILRNGDVLEING 419 (422)
T ss_pred EecCCCCHHHHHHHHHHhCCCEEEecCCcH-H-------------HHHHHHHHHHHcCCCcccEEEecCCcEEEecC
Confidence 345688999999999999999999999642 2 13555566665553 35788999999999865
No 54
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=83.80 E-value=0.32 Score=48.38 Aligned_cols=70 Identities=19% Similarity=0.218 Sum_probs=40.0
Q ss_pred cEEEEEeCCcEEEEccccCCCCCC-CcccccccCCcccCCCCCCCCCCccEEEecCCCCCCCChhhHHHhhhc----CCC
Q 019221 87 NSWLWDLDGVKVLVDPILVGNLDF-GIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKM----SPN 161 (344)
Q Consensus 87 ss~li~~~g~~ILiDP~~~g~~s~-p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~L~~~----~p~ 161 (344)
|-.+|+.+-.-|+|||..+....- ...... +. .-+ .+|-+|+-||.|.||+ +.++-+.+. ..+
T Consensus 127 NITfveGdtg~IViDpL~t~~tA~aAldl~~-------~~--~g~-rPV~aVIYtHsH~DHf--GGVkGiv~eadV~sGk 194 (655)
T COG2015 127 NITFVEGDTGWIVIDPLVTPETAKAALDLYN-------QH--RGQ-RPVVAVIYTHSHSDHF--GGVKGIVSEADVKSGK 194 (655)
T ss_pred ceEEEcCCcceEEEcccCCcHHHHHHHHHHH-------Hh--cCC-CCeEEEEeeccccccc--CCeeeccCHHHcccCc
Confidence 445577777789999966521110 000000 00 112 2789999999999995 666655321 146
Q ss_pred ceEEEcc
Q 019221 162 LKVIATP 168 (344)
Q Consensus 162 ~~v~~~~ 168 (344)
++++++.
T Consensus 195 V~iiAP~ 201 (655)
T COG2015 195 VQIIAPA 201 (655)
T ss_pred eeEecch
Confidence 7776543
No 55
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=78.38 E-value=2.7 Score=27.54 Aligned_cols=27 Identities=7% Similarity=0.215 Sum_probs=23.3
Q ss_pred ccccCHHHHHHHHHHcCCCEEEEeeeC
Q 019221 266 TLVSGQEDAVKLAKLLHAKFIVPMKNG 292 (344)
Q Consensus 266 ~~h~~~eea~~~~~~l~~k~vip~H~~ 292 (344)
..|.+.++..+.++.++|+.++++|..
T Consensus 15 SgHad~~~L~~~i~~~~p~~vilVHGe 41 (43)
T PF07521_consen 15 SGHADREELLEFIEQLNPRKVILVHGE 41 (43)
T ss_dssp SSS-BHHHHHHHHHHHCSSEEEEESSE
T ss_pred cCCCCHHHHHHHHHhcCCCEEEEecCC
Confidence 348899999999999999999999963
No 56
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=70.32 E-value=7.5 Score=27.90 Aligned_cols=46 Identities=17% Similarity=0.234 Sum_probs=32.8
Q ss_pred CcEEEEEeCCcEEEE-ccccCCCCCCCcccccccCCcccC--CCCCCCCCCccEEEecCCC-CCCC
Q 019221 86 GNSWLWDLDGVKVLV-DPILVGNLDFGIPWLFDAGKKFLK--SFQLSDLPQVDCLLITQSL-DDHC 147 (344)
Q Consensus 86 hss~li~~~g~~ILi-DP~~~g~~s~p~~~~~~~~~~~~~--~~~~~~lp~iD~VlISH~H-~DHl 147 (344)
+.|++|..+..+.|+ ++ +... .|.+. .+. +.++..|++|+.. +|++
T Consensus 12 ~p~l~l~~d~~rYlFGn~---gEGt----------QR~~~e~~ik---l~kl~~IFlT~~~~w~~~ 61 (63)
T PF13691_consen 12 GPSLLLFFDSRRYLFGNC---GEGT----------QRACNEHKIK---LSKLNDIFLTGLSSWENI 61 (63)
T ss_pred CCEEEEEeCCceEEeccC---CcHH----------HHHHHHcCCC---ccccceEEECCCCccccc
Confidence 368999999999999 88 4332 12221 233 3589999999999 8874
No 57
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=69.00 E-value=2.1 Score=39.42 Aligned_cols=61 Identities=7% Similarity=-0.189 Sum_probs=44.4
Q ss_pred EEeCCcEEEEccccCCCCCCCcccccccCCcccC-CCCCCCCCCccEEEecCCCCCCCChhhHHHh
Q 019221 91 WDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLK-SFQLSDLPQVDCLLITQSLDDHCHLKTLKPL 155 (344)
Q Consensus 91 i~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~-~~~~~~lp~iD~VlISH~H~DHld~~tl~~L 155 (344)
..+.+-..+.||+++.. + |- .++++++.+. ..+++.++.++.++++|+|+||.++.++..+
T Consensus 99 ~~~tdpvf~d~~if~s~-g-Pk--ry~~pp~~~~~~p~~d~~~vsh~h~dhld~~~~~~~~~~~~~ 160 (343)
T KOG3798|consen 99 KFVTDPVWADRASFTSF-G-PK--RYRPPPMKLEDLPDLDFAVVSHDHYDHLDADAVKKITDRNPQ 160 (343)
T ss_pred EEecchhhccchhhccc-C-cc--cccCCchhhccCCCCceeccccccccccchHHHHhhhccCcc
Confidence 44567788999999754 3 43 3345655554 5667788899999999999999987766544
No 58
>KOG3592 consensus Microtubule-associated proteins [Cytoskeleton]
Probab=59.33 E-value=4.3 Score=42.46 Aligned_cols=46 Identities=24% Similarity=0.433 Sum_probs=32.9
Q ss_pred EEEEEeCCcEEEEccccCCCCCCCcccccccCCcccCCCCCCCCCCccEEEecCCCCCCC
Q 019221 88 SWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHC 147 (344)
Q Consensus 88 s~li~~~g~~ILiDP~~~g~~s~p~~~~~~~~~~~~~~~~~~~lp~iD~VlISH~H~DHl 147 (344)
+-|+-.+|.+||++-.- .+-+ ++ |-. +.-|.+||+||+||--.|.|
T Consensus 50 aALFavnGf~iLv~Ggs-erKS-~f-wkl-----------VrHldrVdaVLLthpg~dNL 95 (934)
T KOG3592|consen 50 AALFAVNGFNILVNGGS-ERKS-CF-WKL-----------VRHLDRVDAVLLTHPGADNL 95 (934)
T ss_pred ceeEeecceEEeecCCc-cccc-ch-HHH-----------HHHHhhhhhhhhcccccCcc
Confidence 56788999999999833 3333 22 311 23455899999999999997
No 59
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=53.85 E-value=21 Score=36.86 Aligned_cols=60 Identities=18% Similarity=0.339 Sum_probs=43.5
Q ss_pred cccCHHHHHHHHHHcCCCEEEEeeeCCccCcccccccccccCCHHHHHHHHHhcC-CCCeeeccCCCCeEEcCCC
Q 019221 267 LVSGQEDAVKLAKLLHAKFIVPMKNGDLDSKGFLASIIQSEGTVESFKELLSKEL-PDAQLLEPTPGEPLEIPAP 340 (344)
Q Consensus 267 ~h~~~eea~~~~~~l~~k~vip~H~~~f~~~~~~~~~l~~~~~~e~~~~~~~~~~-~~~~~~~~~~Ge~~~l~~~ 340 (344)
.|-+.+|-..++..++|+++||+|.. +.. .-...++..+.+ ....++.++.|+.+.+...
T Consensus 370 GHas~eel~~mi~~l~Pky~iPvHGe-yr~-------------~~~~a~la~~~G~~~~~i~i~~nG~v~~l~~~ 430 (555)
T COG0595 370 GHASREELKLMINLLRPKYLIPVHGE-YRM-------------LVAHAKLAEEEGIPQENIFILRNGDVLELEGG 430 (555)
T ss_pred CCCChHHHHHHHHhhCCceecccCCC-cHH-------------HHHHHHHHHhcCCCcccEEEecCceEEEecCC
Confidence 48899999999999999999999954 332 223333444444 2346888899999998754
No 60
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=50.25 E-value=32 Score=36.14 Aligned_cols=58 Identities=10% Similarity=0.184 Sum_probs=43.5
Q ss_pred cccccCHHHHHHHHHHcCC--CEEEEeeeCCccCcccccccccccCCHHHHHHHHHhcCCCCeeeccCCCCeEEc
Q 019221 265 FTLVSGQEDAVKLAKLLHA--KFIVPMKNGDLDSKGFLASIIQSEGTVESFKELLSKELPDAQLLEPTPGEPLEI 337 (344)
Q Consensus 265 ~~~h~~~eea~~~~~~l~~--k~vip~H~~~f~~~~~~~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~Ge~~~l 337 (344)
+..|.+.+|.++.++.+++ +.++.+|...- ..+.|.+.+.+.. ++++.+|+.||++.+
T Consensus 570 fSaHaD~~~L~~~v~~~~p~p~~v~lvHGe~~--------------~~~~la~~l~~~~-~~~~~~P~~~e~~~~ 629 (630)
T TIGR03675 570 FSGHSDRRQLMNYVRRMQPKPEKILLNHGEPS--------------KILDLASSIYKKF-NIETYAPKNLETIRL 629 (630)
T ss_pred ccccCCHHHHHHHHHhcCCCCCEEEEEcCCHH--------------HHHHHHHHHHHHh-CCcEEeCCCCCEEEe
Confidence 4569999999999999965 99999996531 2455666655432 367889999999986
No 61
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=36.80 E-value=98 Score=29.94 Aligned_cols=61 Identities=20% Similarity=0.284 Sum_probs=45.8
Q ss_pred cccccCHHHHHHHHHHcCCCEEEEeeeCCccCcccccccccccCCHHHHHHHHHhcCCCCeeeccCCCCeEEcCCC
Q 019221 265 FTLVSGQEDAVKLAKLLHAKFIVPMKNGDLDSKGFLASIIQSEGTVESFKELLSKELPDAQLLEPTPGEPLEIPAP 340 (344)
Q Consensus 265 ~~~h~~~eea~~~~~~l~~k~vip~H~~~f~~~~~~~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~Ge~~~l~~~ 340 (344)
+..|.+.....++.+...||.++.+|...-. -+-+++.++++ -++....|.-||++.+...
T Consensus 388 FSaHaDAkGIm~li~~csPknVmlVHGE~~k--------------M~~Lk~ki~~e-~~ip~~mPaNGetv~i~s~ 448 (501)
T KOG1136|consen 388 FSAHADAKGIMQLIKQCSPKNVMLVHGEKSK--------------MKFLKEKIESE-FDIPTFMPANGETVVISST 448 (501)
T ss_pred eccccCchhHHHHHHhcCcceEEEEeccchh--------------hHHHHHhhHhh-cCCceeeCCCCCEEEeccc
Confidence 3448888999999999999999999976433 23344444443 2578888999999998765
No 62
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=34.93 E-value=27 Score=33.89 Aligned_cols=45 Identities=24% Similarity=0.306 Sum_probs=34.3
Q ss_pred CccEEEe--cCCCCCCCChhhHHHhhhcCCCceEEEccc----hHHHHhhcC
Q 019221 133 QVDCLLI--TQSLDDHCHLKTLKPLSKMSPNLKVIATPN----AKTLLDPLF 178 (344)
Q Consensus 133 ~iD~VlI--SH~H~DHld~~tl~~L~~~~p~~~v~~~~~----~~~~l~~~~ 178 (344)
.+|+++| +|.|..|. ...++.|++.+|++++++..- +...|..+|
T Consensus 120 gvD~ivID~a~g~s~~~-~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aG 170 (352)
T PF00478_consen 120 GVDVIVIDSAHGHSEHV-IDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAG 170 (352)
T ss_dssp T-SEEEEE-SSTTSHHH-HHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT
T ss_pred CCCEEEccccCccHHHH-HHHHHHHHHhCCCceEEecccCCHHHHHHHHHcC
Confidence 6788888 89999998 788999999998899886543 344565554
No 63
>COG3669 Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=34.32 E-value=53 Score=32.35 Aligned_cols=29 Identities=14% Similarity=0.163 Sum_probs=26.3
Q ss_pred ccCHHHHHHHHHHcCCCEEEEe--eeCCccC
Q 019221 268 VSGQEDAVKLAKLLHAKFIVPM--KNGDLDS 296 (344)
Q Consensus 268 h~~~eea~~~~~~l~~k~vip~--H~~~f~~ 296 (344)
+-+|+|-+++++..+||++|++ |.+-|.+
T Consensus 53 ~wDP~eWar~fK~aGAKyvilvakHHDGFaL 83 (430)
T COG3669 53 NWDPREWARLFKEAGAKYVILVAKHHDGFAL 83 (430)
T ss_pred cCCHHHHHHHHHHcCCcEEEEeeeecCCeee
Confidence 5599999999999999999998 8888887
No 64
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=33.06 E-value=34 Score=33.06 Aligned_cols=47 Identities=13% Similarity=0.121 Sum_probs=34.8
Q ss_pred CCccEEEe--cCCCCCCCChhhHHHhhhcCCCceEEEccc----hHHHHhhcCC
Q 019221 132 PQVDCLLI--TQSLDDHCHLKTLKPLSKMSPNLKVIATPN----AKTLLDPLFQ 179 (344)
Q Consensus 132 p~iD~VlI--SH~H~DHld~~tl~~L~~~~p~~~v~~~~~----~~~~l~~~~~ 179 (344)
+.+|+|+| +|.|.++. +..++.+++.+|++.+++..- ++..|..+|.
T Consensus 121 ~g~D~iviD~AhGhs~~~-i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGA 173 (346)
T PRK05096 121 PALNFICIDVANGYSEHF-VQFVAKAREAWPDKTICAGNVVTGEMVEELILSGA 173 (346)
T ss_pred CCCCEEEEECCCCcHHHH-HHHHHHHHHhCCCCcEEEecccCHHHHHHHHHcCC
Confidence 46788876 99999997 788999999999888776443 3445555553
No 65
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=32.90 E-value=61 Score=31.29 Aligned_cols=46 Identities=15% Similarity=0.197 Sum_probs=33.9
Q ss_pred CCccEEEe--cCCCCCCCChhhHHHhhhcCCCceEEEc----cchHHHHhhcC
Q 019221 132 PQVDCLLI--TQSLDDHCHLKTLKPLSKMSPNLKVIAT----PNAKTLLDPLF 178 (344)
Q Consensus 132 p~iD~VlI--SH~H~DHld~~tl~~L~~~~p~~~v~~~----~~~~~~l~~~~ 178 (344)
+.+|+|+| +|.|.++. ++.++.+++.+|+..++.. +.++..|..+|
T Consensus 120 ~~~d~iviD~AhGhs~~~-i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aG 171 (343)
T TIGR01305 120 PQLKFICLDVANGYSEHF-VEFVKLVREAFPEHTIMAGNVVTGEMVEELILSG 171 (343)
T ss_pred CCCCEEEEECCCCcHHHH-HHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcC
Confidence 46788876 99999998 8889999998888776654 34455555555
No 66
>PF07522 DRMBL: DNA repair metallo-beta-lactamase; InterPro: IPR011084 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in DNA repair [].
Probab=32.41 E-value=48 Score=26.14 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=22.7
Q ss_pred cccccCHHHHHHHHHHcCCCEEEEe
Q 019221 265 FTLVSGQEDAVKLAKLLHAKFIVPM 289 (344)
Q Consensus 265 ~~~h~~~eea~~~~~~l~~k~vip~ 289 (344)
+..|++..|..++++.++++.++|+
T Consensus 81 YSeHSSf~EL~~Fv~~l~P~~IiPt 105 (110)
T PF07522_consen 81 YSEHSSFSELKEFVSFLKPKKIIPT 105 (110)
T ss_pred cccCCCHHHHHHHHHhcCCcEEEcc
Confidence 3569999999999999999999986
No 67
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.52 E-value=96 Score=25.72 Aligned_cols=72 Identities=17% Similarity=0.316 Sum_probs=46.0
Q ss_pred eEEEEeCCCceEEEEcCCCCCcch----hhc----------ccCccEEEEccccccCCCcccccCHHHHHHHHHHcCCCE
Q 019221 220 GYLVNSSQGQLTLYYEPHCVYNQN----FLE----------KERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKF 285 (344)
Q Consensus 220 g~vi~~~~g~~~i~~sGDt~~~~~----~~~----------~~~~Dl~il~~~g~~~~~~~~h~~~eea~~~~~~l~~k~ 285 (344)
+|.|... ..||+.|+.+... +.+ ....|++++= +|.-.|.... +|+++.++++.+.++.
T Consensus 46 ~favRDk----e~~fipd~d~ek~rkl~~~d~G~ql~e~e~~n~aDvvVLl-GGLaMP~~gv--~~d~~kel~ee~~~kk 118 (154)
T COG4090 46 AFAVRDK----EQYFIPDLDFEKARKLELTDHGYQLGEREELNSADVVVLL-GGLAMPKIGV--TPDDAKELLEELGNKK 118 (154)
T ss_pred HHHhhch----heeecCCcChhHhheeeeeccceecCCccccccccEEEEE-cccccCcCCC--CHHHHHHHHHhcCCCc
Confidence 6677643 5677776654321 111 1258887765 3655554434 8999999999999998
Q ss_pred EEEeee-CCccCcc
Q 019221 286 IVPMKN-GDLDSKG 298 (344)
Q Consensus 286 vip~H~-~~f~~~~ 298 (344)
+|.+-+ ..|..+|
T Consensus 119 liGvCfm~mF~rag 132 (154)
T COG4090 119 LIGVCFMNMFERAG 132 (154)
T ss_pred eEEeeHHHHHHHcC
Confidence 888765 5565433
No 68
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=25.29 E-value=65 Score=26.69 Aligned_cols=32 Identities=9% Similarity=0.136 Sum_probs=17.8
Q ss_pred CCCccEEEecCCCCCCCChhhHHHhhhcCCCceEEE
Q 019221 131 LPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVIA 166 (344)
Q Consensus 131 lp~iD~VlISH~H~DHld~~tl~~L~~~~p~~~v~~ 166 (344)
+++-++|++||+| ..|...++.+.++ ++.++.
T Consensus 54 ~~~~t~Vv~th~h--~~D~~~L~~~l~~--~~~YiG 85 (136)
T PF13478_consen 54 IDPNTAVVMTHDH--ELDAEALEAALAS--PARYIG 85 (136)
T ss_dssp S-TT-EEE--S-C--CCHHHHHHHHTTS--S-SEEE
T ss_pred CCCCeEEEEcCCc--hhHHHHHHHHHcC--CCCEEE
Confidence 4566789999998 5566888888764 455443
No 69
>PF00797 Acetyltransf_2: N-acetyltransferase; InterPro: IPR001447 Arylamine N-acetyltransferase (NAT) is a cytosolic enzyme of approximately 30 kDa. It facilitates the transfer of an acetyl group from acetyl coenzyme A on to a wide range of arylamine, N-hydroxyarylamines and hydrazines. Acetylation of these compounds generally results in inactivation. NAT is found in many species from Mycobacteria (Mycobacterium tuberculosis, Mycobacterium smegmatis etc) to Homo sapiens (Human). It was the first enzyme to be observed to have polymorphic activity amongst human individuals. NAT is responsible for the inactivation of Isoniazid (a drug used to treat tuberculosis) in humans. The NAT protein has also been shown to be involved in the breakdown of folic acid. NAT catalyses the reaction: Acetyl-coA + arylamine = coA + N-acetylarylamine NAT is the target of a common genetic polymorphism of clinical relevance in humans. The N-acetylation polymorphism is determined by low or high NAT activity in liver. NAT has been implicated in the action and toxicity of amine-containing drugs, and in the susceptibility to cancer and systematic lupus erythematosus. Two highly similar human genes for NAT, termed NAT1 and NAT2, encode genetically invariant and variant NAT proteins, respectively. ; GO: 0016407 acetyltransferase activity, 0008152 metabolic process; PDB: 1W6F_A 1W5R_A 1GX3_D 2PQT_A 2IJA_A 1W4T_A 2BSZ_B 3D9W_B 3LTW_A 3LNB_A ....
Probab=23.48 E-value=89 Score=28.05 Aligned_cols=24 Identities=29% Similarity=0.207 Sum_probs=19.9
Q ss_pred EEeCcEEEEEeCCcEEEEccccCC
Q 019221 83 YLEGNSWLWDLDGVKVLVDPILVG 106 (344)
Q Consensus 83 ~lGhss~li~~~g~~ILiDP~~~g 106 (344)
...|-+.+|+.+|...|+|..|++
T Consensus 85 ~~~H~~liV~~~~~~ylvDvGfG~ 108 (240)
T PF00797_consen 85 PRTHLVLIVTLDGERYLVDVGFGG 108 (240)
T ss_dssp SEEEEEEEEEETTEEEEE-SSSTT
T ss_pred CCceEEEEEEECCEEEEEeccCCC
Confidence 457999999999999999998864
Done!