Query 019222
Match_columns 344
No_of_seqs 189 out of 1512
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 07:42:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019222.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019222hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 5.4E-70 1.2E-74 502.0 33.1 306 9-319 1-310 (316)
2 KOG1575 Voltage-gated shaker-l 100.0 4.6E-69 1E-73 485.9 31.7 318 5-328 8-335 (336)
3 COG0656 ARA1 Aldo/keto reducta 100.0 3E-64 6.4E-69 446.8 26.7 258 9-321 3-267 (280)
4 TIGR01293 Kv_beta voltage-depe 100.0 8.2E-63 1.8E-67 457.7 31.4 298 11-316 1-316 (317)
5 PRK09912 L-glyceraldehyde 3-ph 100.0 1.7E-62 3.6E-67 460.2 33.0 310 5-319 9-334 (346)
6 PRK10625 tas putative aldo-ket 100.0 1.8E-62 3.8E-67 460.8 33.1 306 9-318 1-339 (346)
7 PLN02587 L-galactose dehydroge 100.0 4.7E-60 1E-64 438.8 30.4 287 11-319 1-301 (314)
8 KOG1577 Aldo/keto reductase fa 100.0 2.5E-59 5.3E-64 415.2 24.4 260 11-322 6-289 (300)
9 cd06660 Aldo_ket_red Aldo-keto 100.0 2.8E-58 6.1E-63 421.9 31.2 281 11-316 1-285 (285)
10 PRK10376 putative oxidoreducta 100.0 8.8E-58 1.9E-62 418.7 30.5 274 11-319 9-289 (290)
11 PRK11172 dkgB 2,5-diketo-D-glu 100.0 4.7E-57 1E-61 409.1 27.8 246 19-319 1-253 (267)
12 PF00248 Aldo_ket_red: Aldo/ke 100.0 2.4E-57 5.2E-62 415.4 25.3 276 23-317 1-282 (283)
13 PRK14863 bifunctional regulato 100.0 5.7E-56 1.2E-60 406.1 24.6 270 18-317 2-281 (292)
14 PRK11565 dkgA 2,5-diketo-D-glu 100.0 8.1E-55 1.8E-59 395.8 27.9 254 11-320 6-264 (275)
15 COG4989 Predicted oxidoreducta 100.0 7.3E-55 1.6E-59 370.5 22.6 286 9-320 1-295 (298)
16 COG1453 Predicted oxidoreducta 100.0 8.8E-51 1.9E-55 364.0 24.2 271 9-317 1-284 (391)
17 KOG1576 Predicted oxidoreducta 100.0 1.2E-49 2.5E-54 341.1 22.6 282 8-307 21-310 (342)
18 KOG3023 Glutamate-cysteine lig 98.0 1.7E-05 3.6E-10 68.4 6.2 72 142-214 155-228 (285)
19 cd03319 L-Ala-DL-Glu_epimerase 93.8 2.4 5.3E-05 39.2 14.4 155 40-218 134-291 (316)
20 cd03316 MR_like Mandelate race 87.7 11 0.00025 35.4 12.6 154 40-214 139-299 (357)
21 cd03315 MLE_like Muconate lact 87.6 21 0.00045 32.1 14.7 157 40-218 85-243 (265)
22 cd00739 DHPS DHPS subgroup of 83.1 23 0.00049 31.9 11.5 101 107-213 21-127 (257)
23 PRK08392 hypothetical protein; 82.2 15 0.00032 32.0 9.8 154 43-210 15-178 (215)
24 PRK07535 methyltetrahydrofolat 81.9 28 0.00061 31.3 11.7 136 108-271 23-158 (261)
25 cd00423 Pterin_binding Pterin 81.4 40 0.00086 30.2 13.6 103 107-215 21-129 (258)
26 cd03174 DRE_TIM_metallolyase D 80.5 11 0.00023 33.7 8.6 106 106-213 15-135 (265)
27 PRK07945 hypothetical protein; 79.8 22 0.00047 33.4 10.6 152 42-209 111-287 (335)
28 PRK13958 N-(5'-phosphoribosyl) 79.3 5.9 0.00013 34.4 6.2 68 119-188 16-84 (207)
29 cd03323 D-glucarate_dehydratas 79.3 61 0.0013 31.1 13.9 149 40-215 168-321 (395)
30 cd00308 enolase_like Enolase-s 78.0 14 0.00029 32.4 8.3 87 128-218 120-208 (229)
31 cd02930 DCR_FMN 2,4-dienoyl-Co 78.0 52 0.0011 31.0 12.7 15 47-61 142-156 (353)
32 COG1748 LYS9 Saccharopine dehy 77.0 14 0.00029 35.4 8.3 81 42-139 79-159 (389)
33 PRK10550 tRNA-dihydrouridine s 76.7 64 0.0014 29.9 12.6 134 40-187 73-225 (312)
34 PRK08609 hypothetical protein; 76.5 46 0.001 33.7 12.4 149 44-209 351-521 (570)
35 PRK13352 thiamine biosynthesis 75.4 39 0.00084 32.4 10.6 147 40-219 75-228 (431)
36 PRK13796 GTPase YqeH; Provisio 75.2 76 0.0017 30.1 13.3 120 39-171 54-176 (365)
37 cd03325 D-galactonate_dehydrat 74.3 78 0.0017 29.8 13.5 154 40-213 123-285 (352)
38 PRK14017 galactonate dehydrata 73.8 41 0.00089 32.0 10.9 156 40-215 124-288 (382)
39 PRK04452 acetyl-CoA decarbonyl 73.4 41 0.00089 31.3 10.2 95 118-215 83-184 (319)
40 PRK10558 alpha-dehydro-beta-de 73.2 30 0.00066 31.0 9.2 67 149-216 10-79 (256)
41 cd03321 mandelate_racemase Man 72.5 82 0.0018 29.6 12.5 152 40-212 141-294 (355)
42 PRK01222 N-(5'-phosphoribosyl) 72.3 10 0.00022 32.9 5.9 66 121-188 20-86 (210)
43 COG0135 TrpF Phosphoribosylant 72.2 20 0.00043 31.1 7.5 81 121-210 19-102 (208)
44 TIGR02534 mucon_cyclo muconate 72.1 61 0.0013 30.7 11.6 87 128-218 213-301 (368)
45 cd04740 DHOD_1B_like Dihydroor 70.4 86 0.0019 28.6 12.6 151 40-207 100-286 (296)
46 TIGR00190 thiC thiamine biosyn 70.4 31 0.00066 32.9 8.7 147 40-219 75-225 (423)
47 TIGR01928 menC_lowGC/arch o-su 70.0 94 0.002 28.8 14.4 153 40-218 132-286 (324)
48 PRK00164 moaA molybdenum cofac 70.0 93 0.002 28.8 13.9 152 39-211 49-228 (331)
49 PF07021 MetW: Methionine bios 69.5 22 0.00048 30.4 7.0 102 116-219 64-172 (193)
50 TIGR02370 pyl_corrinoid methyl 69.4 49 0.0011 28.3 9.3 148 40-207 10-164 (197)
51 cd03322 rpsA The starvation se 67.6 19 0.0004 34.1 7.0 83 129-215 190-274 (361)
52 cd03318 MLE Muconate Lactonizi 66.6 1.2E+02 0.0025 28.7 13.5 84 129-216 215-300 (365)
53 PLN02363 phosphoribosylanthran 66.6 32 0.0007 30.9 7.9 75 108-188 56-131 (256)
54 PRK00730 rnpA ribonuclease P; 66.2 34 0.00074 27.6 7.1 63 83-155 46-110 (138)
55 PRK10128 2-keto-3-deoxy-L-rham 66.1 60 0.0013 29.3 9.6 66 149-215 9-77 (267)
56 cd04731 HisF The cyclase subun 65.8 57 0.0012 28.8 9.4 85 118-205 156-243 (243)
57 cd00740 MeTr MeTr subgroup of 65.6 1E+02 0.0022 27.6 12.3 105 107-215 23-128 (252)
58 TIGR00735 hisF imidazoleglycer 64.9 42 0.00091 29.9 8.4 89 118-209 162-253 (254)
59 COG3172 NadR Predicted ATPase/ 64.7 36 0.00078 28.4 7.0 104 47-156 70-185 (187)
60 PRK09856 fructoselysine 3-epim 63.9 51 0.0011 29.5 8.9 51 196-265 93-143 (275)
61 TIGR01502 B_methylAsp_ase meth 63.9 35 0.00077 32.9 8.1 86 129-215 265-357 (408)
62 PRK09427 bifunctional indole-3 63.2 30 0.00064 33.9 7.5 73 108-189 266-339 (454)
63 COG1140 NarY Nitrate reductase 62.8 3.1 6.8E-05 38.9 0.7 54 155-208 263-317 (513)
64 TIGR03239 GarL 2-dehydro-3-deo 62.4 61 0.0013 28.9 8.9 64 151-215 5-71 (249)
65 PRK15072 bifunctional D-altron 62.2 39 0.00084 32.5 8.1 83 129-215 233-317 (404)
66 PRK13803 bifunctional phosphor 60.8 58 0.0013 33.3 9.4 76 108-188 12-88 (610)
67 PRK05406 LamB/YcsF family prot 60.1 38 0.00082 30.2 6.9 82 25-124 13-96 (246)
68 cd03314 MAL Methylaspartate am 60.0 56 0.0012 31.1 8.6 84 131-214 230-320 (369)
69 PRK09613 thiH thiamine biosynt 59.7 1.8E+02 0.004 28.6 13.9 171 40-212 29-238 (469)
70 PRK12581 oxaloacetate decarbox 59.2 1.9E+02 0.0041 28.6 13.6 113 40-168 103-216 (468)
71 PRK12569 hypothetical protein; 58.8 37 0.00079 30.2 6.6 82 25-124 14-99 (245)
72 PF04476 DUF556: Protein of un 58.7 1.2E+02 0.0026 26.8 9.6 151 40-209 9-183 (235)
73 TIGR03247 glucar-dehydr glucar 58.3 1.9E+02 0.0041 28.3 13.2 86 130-215 252-338 (441)
74 COG0635 HemN Coproporphyrinoge 58.0 81 0.0017 30.6 9.5 109 21-168 148-276 (416)
75 cd03327 MR_like_2 Mandelate ra 57.7 1.6E+02 0.0036 27.4 14.8 153 40-213 120-280 (341)
76 PF11242 DUF2774: Protein of u 56.1 17 0.00036 24.7 3.1 22 255-276 15-36 (63)
77 cd07944 DRE_TIM_HOA_like 4-hyd 55.8 1.3E+02 0.0027 27.2 9.9 104 105-211 15-127 (266)
78 PRK00208 thiG thiazole synthas 55.8 1.5E+02 0.0033 26.4 13.9 105 106-212 72-181 (250)
79 PRK03892 ribonuclease P protei 55.8 1.4E+02 0.003 26.0 11.3 168 85-304 28-197 (216)
80 PRK07379 coproporphyrinogen II 55.5 78 0.0017 30.4 8.9 59 108-168 180-255 (400)
81 PRK00507 deoxyribose-phosphate 55.4 59 0.0013 28.5 7.4 75 40-126 134-208 (221)
82 cd02070 corrinoid_protein_B12- 55.2 1.3E+02 0.0029 25.6 10.3 149 40-207 9-162 (201)
83 PRK14457 ribosomal RNA large s 55.1 1.9E+02 0.0041 27.3 12.2 136 83-219 99-266 (345)
84 TIGR02026 BchE magnesium-proto 54.3 1.4E+02 0.0029 29.7 10.7 152 40-207 223-392 (497)
85 PRK02083 imidazole glycerol ph 53.4 1.3E+02 0.0029 26.7 9.6 84 121-209 163-251 (253)
86 TIGR01496 DHPS dihydropteroate 53.3 1.7E+02 0.0037 26.2 13.7 99 107-213 20-125 (257)
87 PRK08446 coproporphyrinogen II 52.9 1.9E+02 0.004 27.2 10.9 59 108-168 163-231 (350)
88 PRK14461 ribosomal RNA large s 52.8 1E+02 0.0022 29.3 8.9 87 131-217 232-352 (371)
89 PRK06294 coproporphyrinogen II 52.5 1.1E+02 0.0024 29.1 9.3 60 107-168 167-243 (370)
90 PF13378 MR_MLE_C: Enolase C-t 52.1 19 0.00042 27.3 3.5 54 164-218 3-57 (111)
91 cd07943 DRE_TIM_HOA 4-hydroxy- 51.9 1.3E+02 0.0029 26.9 9.4 102 106-212 18-131 (263)
92 COG2102 Predicted ATPases of P 51.7 49 0.0011 28.9 6.1 104 141-268 74-177 (223)
93 COG4130 Predicted sugar epimer 51.4 88 0.0019 27.3 7.4 80 167-265 50-136 (272)
94 PRK02901 O-succinylbenzoate sy 51.1 1.1E+02 0.0023 28.6 8.8 71 146-218 173-244 (327)
95 TIGR03822 AblA_like_2 lysine-2 50.6 2.1E+02 0.0046 26.5 12.3 109 108-219 120-240 (321)
96 cd06543 GH18_PF-ChiA-like PF-C 50.4 2E+02 0.0044 26.3 12.8 187 17-217 66-264 (294)
97 PRK08255 salicylyl-CoA 5-hydro 50.3 3.3E+02 0.0072 28.7 13.4 115 83-208 615-737 (765)
98 COG2949 SanA Uncharacterized m 49.4 1.6E+02 0.0034 25.7 8.6 99 110-214 76-181 (235)
99 PRK09058 coproporphyrinogen II 49.4 93 0.002 30.4 8.5 27 107-134 227-253 (449)
100 PF05690 ThiG: Thiazole biosyn 48.6 1.9E+02 0.004 25.7 9.1 114 22-159 9-126 (247)
101 PF00682 HMGL-like: HMGL-like 48.1 1.3E+02 0.0029 26.1 8.7 119 39-174 11-142 (237)
102 PLN00191 enolase 47.9 1.4E+02 0.003 29.4 9.3 97 107-212 295-394 (457)
103 cd02932 OYE_YqiM_FMN Old yello 47.7 2.4E+02 0.0051 26.3 12.6 95 83-185 218-319 (336)
104 PRK13347 coproporphyrinogen II 47.3 1.2E+02 0.0026 29.7 8.9 60 107-168 216-291 (453)
105 cd03326 MR_like_1 Mandelate ra 47.2 2.6E+02 0.0057 26.7 11.9 147 40-209 160-314 (385)
106 PF00682 HMGL-like: HMGL-like 46.6 80 0.0017 27.6 7.0 98 106-209 10-124 (237)
107 cd07948 DRE_TIM_HCS Saccharomy 46.3 2E+02 0.0043 25.9 9.5 103 40-164 20-133 (262)
108 cd07943 DRE_TIM_HOA 4-hydroxy- 46.3 2.2E+02 0.0047 25.5 15.6 103 39-163 19-132 (263)
109 TIGR02311 HpaI 2,4-dihydroxyhe 46.1 1.7E+02 0.0038 26.0 9.1 64 149-214 3-70 (249)
110 COG0282 ackA Acetate kinase [E 45.6 1.2E+02 0.0026 29.0 8.0 123 146-299 160-290 (396)
111 cd04728 ThiG Thiazole synthase 45.0 2.3E+02 0.0049 25.3 13.9 104 106-211 72-180 (248)
112 PF03102 NeuB: NeuB family; I 44.8 1.3E+02 0.0029 26.7 8.0 108 39-168 53-182 (241)
113 PRK05660 HemN family oxidoredu 44.7 1.8E+02 0.0039 27.6 9.5 60 107-168 171-243 (378)
114 PRK08195 4-hyroxy-2-oxovalerat 44.7 2.5E+02 0.0054 26.3 10.3 104 104-212 19-134 (337)
115 TIGR01278 DPOR_BchB light-inde 44.5 3.3E+02 0.0072 27.1 13.5 100 72-185 70-194 (511)
116 COG1121 ZnuC ABC-type Mn/Zn tr 44.3 1.2E+02 0.0025 27.3 7.5 66 107-175 112-206 (254)
117 PRK06424 transcription factor; 44.3 68 0.0015 26.1 5.6 82 195-277 22-110 (144)
118 TIGR03217 4OH_2_O_val_ald 4-hy 44.3 2.7E+02 0.0059 26.0 10.6 105 105-212 19-133 (333)
119 PRK00077 eno enolase; Provisio 44.0 2.3E+02 0.0049 27.6 10.2 96 107-211 261-361 (425)
120 TIGR00126 deoC deoxyribose-pho 43.8 1.9E+02 0.0041 25.1 8.7 74 40-128 130-206 (211)
121 PF05913 DUF871: Bacterial pro 43.8 41 0.00089 31.8 4.9 211 40-300 12-235 (357)
122 COG0422 ThiC Thiamine biosynth 43.6 2.3E+02 0.005 27.0 9.4 147 40-219 76-226 (432)
123 PRK05692 hydroxymethylglutaryl 43.5 40 0.00087 30.8 4.6 103 106-211 22-138 (287)
124 TIGR01927 menC_gamma/gm+ o-suc 43.4 1.4E+02 0.003 27.5 8.3 73 147-219 196-270 (307)
125 cd03324 rTSbeta_L-fuconate_deh 43.1 3.2E+02 0.0069 26.4 14.3 151 40-213 196-352 (415)
126 PRK14465 ribosomal RNA large s 42.4 2.3E+02 0.005 26.6 9.6 93 84-176 104-207 (342)
127 PRK05628 coproporphyrinogen II 42.0 1.9E+02 0.0042 27.3 9.3 27 107-134 172-198 (375)
128 TIGR03822 AblA_like_2 lysine-2 41.4 2.9E+02 0.0064 25.6 13.0 103 40-157 120-228 (321)
129 PRK05283 deoxyribose-phosphate 41.3 1.9E+02 0.0042 26.0 8.4 79 40-129 144-227 (257)
130 TIGR00381 cdhD CO dehydrogenas 41.2 3.3E+02 0.0071 26.1 10.9 104 110-218 128-252 (389)
131 TIGR01060 eno phosphopyruvate 40.8 2.7E+02 0.0057 27.1 10.1 96 107-211 262-362 (425)
132 COG1801 Uncharacterized conser 40.6 2.8E+02 0.006 25.0 10.7 81 50-139 31-115 (263)
133 PRK14457 ribosomal RNA large s 40.5 3.2E+02 0.0069 25.7 11.3 106 112-217 196-330 (345)
134 COG0761 lytB 4-Hydroxy-3-methy 40.5 78 0.0017 28.9 5.8 44 254-298 228-277 (294)
135 PF00809 Pterin_bind: Pterin b 40.1 1.3E+02 0.0027 26.0 7.1 89 121-215 29-125 (210)
136 PRK01045 ispH 4-hydroxy-3-meth 40.1 1.6E+02 0.0036 27.1 8.0 108 156-298 156-275 (298)
137 PRK14463 ribosomal RNA large s 40.0 2.1E+02 0.0045 27.0 9.0 92 83-176 101-203 (349)
138 COG2987 HutU Urocanate hydrata 39.9 42 0.00092 32.5 4.2 108 69-183 148-261 (561)
139 PRK07259 dihydroorotate dehydr 39.7 2.9E+02 0.0064 25.1 11.3 153 40-207 102-289 (301)
140 TIGR00048 radical SAM enzyme, 39.5 1.7E+02 0.0037 27.6 8.4 88 130-217 218-333 (355)
141 TIGR00216 ispH_lytB (E)-4-hydr 39.4 1.3E+02 0.0028 27.5 7.1 44 254-298 224-273 (280)
142 TIGR00126 deoC deoxyribose-pho 38.9 2.6E+02 0.0057 24.3 9.7 100 39-155 15-114 (211)
143 PRK08599 coproporphyrinogen II 38.6 1.9E+02 0.0042 27.3 8.7 59 107-167 164-239 (377)
144 PRK14462 ribosomal RNA large s 38.3 2.8E+02 0.006 26.3 9.4 86 132-217 225-338 (356)
145 smart00642 Aamy Alpha-amylase 38.2 31 0.00067 28.7 2.8 21 196-216 73-93 (166)
146 PF01876 RNase_P_p30: RNase P 38.1 61 0.0013 26.3 4.5 59 158-216 25-85 (150)
147 PRK14459 ribosomal RNA large s 37.8 2.4E+02 0.0051 27.0 9.0 89 129-217 240-359 (373)
148 KOG0059 Lipid exporter ABCA1 a 37.8 1.6E+02 0.0034 31.7 8.6 71 106-178 669-768 (885)
149 PRK15108 biotin synthase; Prov 37.6 3.5E+02 0.0076 25.4 12.0 105 39-159 76-187 (345)
150 PF14871 GHL6: Hypothetical gl 37.5 55 0.0012 26.1 4.0 22 195-216 46-67 (132)
151 PRK12360 4-hydroxy-3-methylbut 37.5 1.9E+02 0.0041 26.4 7.9 44 254-298 225-274 (281)
152 cd03320 OSBS o-Succinylbenzoat 37.3 1.3E+02 0.0027 26.9 6.9 85 128-217 153-238 (263)
153 TIGR00538 hemN oxygen-independ 36.9 2.2E+02 0.0048 27.8 9.0 60 107-168 215-290 (455)
154 PF07994 NAD_binding_5: Myo-in 36.5 1.6E+02 0.0035 27.0 7.4 145 108-294 130-283 (295)
155 KOG0173 20S proteasome, regula 36.3 34 0.00074 30.3 2.8 42 14-56 153-200 (271)
156 PRK00912 ribonuclease P protei 36.2 3E+02 0.0064 24.1 11.8 25 41-65 15-39 (237)
157 TIGR02026 BchE magnesium-proto 35.9 3.1E+02 0.0067 27.2 9.9 103 106-212 221-342 (497)
158 KOG0259 Tyrosine aminotransfer 35.8 4.1E+02 0.0088 25.6 11.1 50 39-93 78-135 (447)
159 cd01974 Nitrogenase_MoFe_beta 35.7 4.2E+02 0.0091 25.7 12.9 109 62-184 64-192 (435)
160 PF01402 RHH_1: Ribbon-helix-h 35.6 64 0.0014 19.2 3.3 22 251-272 9-30 (39)
161 PTZ00081 enolase; Provisional 35.5 3.1E+02 0.0067 26.8 9.5 96 107-211 281-381 (439)
162 cd00739 DHPS DHPS subgroup of 35.2 3.3E+02 0.0072 24.4 10.2 57 110-167 146-209 (257)
163 COG1751 Uncharacterized conser 35.2 1.5E+02 0.0032 24.5 6.0 73 40-126 12-85 (186)
164 PLN02746 hydroxymethylglutaryl 35.2 72 0.0016 30.1 5.0 100 106-211 64-180 (347)
165 PRK06740 histidinol-phosphatas 35.0 3.8E+02 0.0082 25.0 10.5 49 114-163 156-221 (331)
166 cd07948 DRE_TIM_HCS Saccharomy 35.0 2.8E+02 0.006 24.9 8.6 100 105-212 17-131 (262)
167 cd03317 NAAAR N-acylamino acid 34.9 3.8E+02 0.0083 25.0 14.4 149 42-216 139-289 (354)
168 PRK10415 tRNA-dihydrouridine s 34.8 3.8E+02 0.0081 24.9 11.8 138 40-189 75-227 (321)
169 cd04734 OYE_like_3_FMN Old yel 34.7 3.9E+02 0.0084 25.0 13.5 23 39-61 131-160 (343)
170 TIGR02082 metH 5-methyltetrahy 34.6 7E+02 0.015 27.9 13.2 90 121-214 378-472 (1178)
171 COG2355 Zn-dependent dipeptida 34.6 2.5E+02 0.0053 26.1 8.2 107 42-165 149-260 (313)
172 PRK14466 ribosomal RNA large s 34.3 1.8E+02 0.0039 27.4 7.5 105 83-191 101-217 (345)
173 PF02401 LYTB: LytB protein; 34.2 85 0.0018 28.6 5.2 108 156-298 155-274 (281)
174 cd03313 enolase Enolase: Enola 33.8 3.6E+02 0.0079 26.0 9.8 96 107-211 261-361 (408)
175 PRK15440 L-rhamnonate dehydrat 33.6 1E+02 0.0023 29.5 6.0 68 145-212 247-318 (394)
176 PRK09061 D-glutamate deacylase 33.5 3.2E+02 0.0069 27.2 9.6 113 43-164 170-283 (509)
177 PF10668 Phage_terminase: Phag 33.4 97 0.0021 21.1 4.1 17 255-271 24-40 (60)
178 PRK07328 histidinol-phosphatas 33.4 3.5E+02 0.0077 24.1 13.2 108 43-164 19-161 (269)
179 PRK08208 coproporphyrinogen II 33.2 3.2E+02 0.007 26.4 9.4 59 107-168 205-275 (430)
180 PRK05799 coproporphyrinogen II 33.2 3.4E+02 0.0073 25.6 9.4 27 107-134 163-189 (374)
181 TIGR02351 thiH thiazole biosyn 33.0 4.1E+02 0.0088 25.1 9.8 102 39-157 103-215 (366)
182 PRK14456 ribosomal RNA large s 32.8 2.5E+02 0.0054 26.7 8.3 87 131-217 238-353 (368)
183 COG1151 6Fe-6S prismane cluste 32.7 2.4E+02 0.0052 28.4 8.2 95 110-209 360-463 (576)
184 PRK06582 coproporphyrinogen II 32.6 2.8E+02 0.0061 26.5 8.7 28 106-134 173-200 (390)
185 PRK05588 histidinol-phosphatas 32.5 1.7E+02 0.0036 26.0 6.8 105 42-162 16-143 (255)
186 TIGR01228 hutU urocanate hydra 32.4 1.5E+02 0.0032 29.3 6.6 116 48-177 109-245 (545)
187 COG2069 CdhD CO dehydrogenase/ 32.2 3.1E+02 0.0068 25.3 8.2 96 117-217 157-262 (403)
188 PRK05414 urocanate hydratase; 32.2 1.5E+02 0.0033 29.3 6.7 116 48-177 118-254 (556)
189 cd01965 Nitrogenase_MoFe_beta_ 31.9 4.8E+02 0.01 25.2 12.8 109 63-185 61-188 (428)
190 COG3623 SgaU Putative L-xylulo 31.4 50 0.0011 29.2 3.0 75 16-93 65-155 (287)
191 PRK14455 ribosomal RNA large s 31.4 2.3E+02 0.0049 26.8 7.8 87 131-217 223-337 (356)
192 CHL00162 thiG thiamin biosynth 31.4 3.9E+02 0.0085 24.1 8.8 53 106-158 80-139 (267)
193 PRK14465 ribosomal RNA large s 31.3 3E+02 0.0065 25.9 8.4 87 131-217 216-329 (342)
194 PRK14466 ribosomal RNA large s 31.0 4.4E+02 0.0096 24.8 9.5 88 130-217 210-325 (345)
195 PRK11194 ribosomal RNA large s 31.0 3.4E+02 0.0073 25.9 8.8 97 120-217 207-337 (372)
196 cd01973 Nitrogenase_VFe_beta_l 31.0 5.2E+02 0.011 25.3 14.8 113 62-185 65-194 (454)
197 PLN02444 HMP-P synthase 31.0 2.6E+02 0.0056 28.2 8.0 88 106-219 296-383 (642)
198 PRK12570 N-acetylmuramic acid- 30.9 3.8E+02 0.0082 24.6 8.9 56 116-174 116-171 (296)
199 PRK13361 molybdenum cofactor b 30.8 4.4E+02 0.0094 24.4 14.8 97 39-157 45-154 (329)
200 smart00052 EAL Putative diguan 30.8 2.7E+02 0.0058 23.8 7.8 99 110-212 99-209 (241)
201 PRK13210 putative L-xylulose 5 30.6 3.9E+02 0.0084 23.7 9.1 51 196-265 97-147 (284)
202 TIGR00035 asp_race aspartate r 30.3 2.1E+02 0.0045 25.0 6.9 63 107-170 14-88 (229)
203 COG0820 Predicted Fe-S-cluster 30.2 3.3E+02 0.0072 25.7 8.4 94 83-176 99-207 (349)
204 PRK09490 metH B12-dependent me 30.2 8.4E+02 0.018 27.5 13.3 168 40-214 290-488 (1229)
205 cd03329 MR_like_4 Mandelate ra 29.9 4.8E+02 0.01 24.6 14.2 152 40-213 143-299 (368)
206 PF01904 DUF72: Protein of unk 29.9 3.8E+02 0.0082 23.4 10.3 136 48-212 12-148 (230)
207 PRK01313 rnpA ribonuclease P; 29.7 2.9E+02 0.0062 22.0 7.0 62 83-154 47-113 (129)
208 COG2256 MGS1 ATPase related to 29.7 2.6E+02 0.0056 27.1 7.6 104 46-168 37-143 (436)
209 PF00762 Ferrochelatase: Ferro 29.6 3.4E+02 0.0073 25.2 8.5 91 109-217 206-299 (316)
210 PRK09249 coproporphyrinogen II 29.5 1.8E+02 0.0039 28.5 7.0 16 207-222 317-332 (453)
211 KOG0023 Alcohol dehydrogenase, 29.4 2.7E+02 0.0059 26.1 7.5 147 6-209 171-324 (360)
212 COG1831 Predicted metal-depend 29.1 3.1E+02 0.0067 24.9 7.6 131 71-207 21-185 (285)
213 PF13407 Peripla_BP_4: Peripla 29.1 1.3E+02 0.0029 26.1 5.6 53 109-167 13-65 (257)
214 TIGR01862 N2-ase-Ialpha nitrog 28.9 5.5E+02 0.012 25.0 12.7 104 63-183 97-221 (443)
215 CHL00076 chlB photochlorophyll 28.8 6E+02 0.013 25.4 14.2 57 127-183 116-197 (513)
216 PRK14461 ribosomal RNA large s 28.6 2.6E+02 0.0056 26.7 7.5 96 83-178 105-225 (371)
217 COG0218 Predicted GTPase [Gene 28.4 3.9E+02 0.0084 23.1 8.3 99 43-155 92-198 (200)
218 PRK09284 thiamine biosynthesis 28.4 3.1E+02 0.0067 27.6 8.1 146 40-219 230-378 (607)
219 PRK12928 lipoyl synthase; Prov 28.3 4E+02 0.0087 24.3 8.6 161 39-215 87-280 (290)
220 TIGR03597 GTPase_YqeH ribosome 28.3 5.1E+02 0.011 24.4 12.2 120 39-171 48-170 (360)
221 PRK06015 keto-hydroxyglutarate 28.3 1.2E+02 0.0025 26.3 4.8 59 145-211 42-102 (201)
222 cd00248 Mth938-like Mth938-lik 28.2 1.4E+02 0.0031 22.8 4.9 52 164-215 37-88 (109)
223 PF00697 PRAI: N-(5'phosphorib 28.0 65 0.0014 27.5 3.2 67 119-189 14-81 (197)
224 TIGR01290 nifB nitrogenase cof 27.9 5.8E+02 0.013 24.9 12.2 108 106-218 59-199 (442)
225 PHA02128 hypothetical protein 27.7 1.6E+02 0.0034 22.5 4.8 69 144-212 61-150 (151)
226 TIGR00737 nifR3_yhdG putative 27.7 4.9E+02 0.011 24.0 11.5 137 40-190 73-226 (319)
227 cd07937 DRE_TIM_PC_TC_5S Pyruv 27.7 4.6E+02 0.0099 23.6 14.1 123 39-173 18-153 (275)
228 PF11020 DUF2610: Domain of un 27.6 1.5E+02 0.0033 21.3 4.4 27 247-273 48-74 (82)
229 PF01118 Semialdhyde_dh: Semia 27.4 88 0.0019 24.2 3.7 28 40-67 75-102 (121)
230 PF09989 DUF2229: CoA enzyme a 27.2 1.4E+02 0.0031 26.0 5.3 32 182-213 188-219 (221)
231 PRK08195 4-hyroxy-2-oxovalerat 26.9 5.3E+02 0.011 24.1 15.7 24 39-62 22-45 (337)
232 TIGR03217 4OH_2_O_val_ald 4-hy 26.4 5.4E+02 0.012 24.0 15.7 24 39-62 21-44 (333)
233 PRK02714 O-succinylbenzoate sy 26.4 5.2E+02 0.011 23.8 14.7 85 128-218 192-277 (320)
234 PRK14453 chloramphenicol/florf 26.2 5.6E+02 0.012 24.1 9.6 92 126-217 203-330 (347)
235 PRK14460 ribosomal RNA large s 26.0 5.6E+02 0.012 24.2 9.9 98 119-217 207-332 (354)
236 TIGR02090 LEU1_arch isopropylm 26.0 5.7E+02 0.012 24.2 10.6 25 39-63 19-43 (363)
237 PRK05458 guanosine 5'-monophos 26.0 3.6E+02 0.0077 25.2 7.9 125 78-211 16-145 (326)
238 COG2896 MoaA Molybdenum cofact 25.9 5.5E+02 0.012 24.0 10.0 134 39-217 43-193 (322)
239 PLN02522 ATP citrate (pro-S)-l 25.9 1.1E+02 0.0024 31.2 4.8 86 68-160 233-325 (608)
240 cd02810 DHOD_DHPD_FMN Dihydroo 25.7 4.9E+02 0.011 23.4 11.1 131 40-185 109-271 (289)
241 PRK01903 rnpA ribonuclease P; 25.7 3.5E+02 0.0075 21.6 6.8 47 108-154 66-128 (133)
242 PRK04390 rnpA ribonuclease P; 25.6 3.2E+02 0.007 21.2 7.2 64 83-155 44-110 (120)
243 COG0001 HemL Glutamate-1-semia 25.6 6.4E+02 0.014 24.6 13.1 145 40-215 70-243 (432)
244 cd04747 OYE_like_5_FMN Old yel 25.4 5.9E+02 0.013 24.1 13.0 23 39-61 134-163 (361)
245 PRK07094 biotin synthase; Prov 25.3 5.2E+02 0.011 23.6 9.1 96 40-157 71-179 (323)
246 PRK09856 fructoselysine 3-epim 25.3 4.7E+02 0.01 23.1 8.6 50 168-217 15-71 (275)
247 cd00945 Aldolase_Class_I Class 25.1 3.9E+02 0.0084 22.0 9.3 98 40-155 11-109 (201)
248 TIGR01182 eda Entner-Doudoroff 25.1 1.5E+02 0.0032 25.7 4.9 88 108-211 18-106 (204)
249 KOG1549 Cysteine desulfurase N 24.8 6E+02 0.013 24.7 9.2 18 73-92 92-109 (428)
250 PRK00499 rnpA ribonuclease P; 24.7 3.2E+02 0.007 20.9 6.9 63 83-155 38-104 (114)
251 PF10171 DUF2366: Uncharacteri 24.6 1.6E+02 0.0035 24.7 4.8 40 128-167 78-117 (173)
252 COG1131 CcmA ABC-type multidru 24.5 1.8E+02 0.0039 26.6 5.6 61 113-176 142-205 (293)
253 PRK03459 rnpA ribonuclease P; 24.4 3.5E+02 0.0076 21.2 6.9 63 83-155 48-114 (122)
254 cd05007 SIS_Etherase N-acetylm 24.4 5.1E+02 0.011 23.1 9.9 56 117-175 108-163 (257)
255 PRK04527 argininosuccinate syn 24.4 3.3E+02 0.0071 26.3 7.5 75 40-137 40-118 (400)
256 cd02801 DUS_like_FMN Dihydrour 24.3 4.6E+02 0.0099 22.5 9.6 134 40-186 65-213 (231)
257 PF02679 ComA: (2R)-phospho-3- 24.3 1.7E+02 0.0037 26.1 5.2 98 113-211 24-131 (244)
258 TIGR03471 HpnJ hopanoid biosyn 24.3 5.9E+02 0.013 24.9 9.7 156 39-207 227-392 (472)
259 TIGR03849 arch_ComA phosphosul 24.2 3.1E+02 0.0068 24.3 6.8 97 113-211 11-118 (237)
260 PRK00087 4-hydroxy-3-methylbut 24.1 2.8E+02 0.006 28.6 7.5 43 254-297 222-270 (647)
261 PF02525 Flavodoxin_2: Flavodo 24.0 3.9E+02 0.0084 22.4 7.4 86 41-137 94-180 (199)
262 cd02069 methionine_synthase_B1 24.0 4.7E+02 0.01 22.6 9.8 149 40-207 13-168 (213)
263 PTZ00413 lipoate synthase; Pro 24.0 6.5E+02 0.014 24.2 11.3 160 39-217 177-373 (398)
264 TIGR00262 trpA tryptophan synt 23.9 5.2E+02 0.011 23.0 8.4 72 142-215 71-150 (256)
265 PRK08776 cystathionine gamma-s 23.7 6.5E+02 0.014 24.1 10.0 86 129-218 100-187 (405)
266 cd00959 DeoC 2-deoxyribose-5-p 23.7 4.6E+02 0.0099 22.3 9.2 99 40-155 15-113 (203)
267 COG3215 PilZ Tfp pilus assembl 23.7 3.1E+02 0.0068 20.9 5.6 80 40-122 18-106 (117)
268 PF05368 NmrA: NmrA-like famil 23.6 2.5E+02 0.0054 24.1 6.3 85 126-218 21-106 (233)
269 PRK14464 ribosomal RNA large s 23.4 4.4E+02 0.0096 24.8 8.0 79 139-217 222-317 (344)
270 cd01948 EAL EAL domain. This d 23.2 4.7E+02 0.01 22.2 8.5 101 110-213 98-209 (240)
271 cd01301 rDP_like renal dipepti 23.1 5.5E+02 0.012 23.7 8.6 107 42-165 154-263 (309)
272 PF07287 DUF1446: Protein of u 23.1 1.6E+02 0.0034 28.0 5.0 17 196-212 61-77 (362)
273 cd02803 OYE_like_FMN_family Ol 22.9 5.9E+02 0.013 23.3 12.9 93 85-185 207-310 (327)
274 PF14502 HTH_41: Helix-turn-he 22.9 85 0.0018 20.3 2.2 29 253-281 6-36 (48)
275 PRK14470 ribosomal RNA large s 22.6 4.8E+02 0.01 24.4 8.1 87 131-217 208-322 (336)
276 COG0626 MetC Cystathionine bet 22.4 3.8E+02 0.0082 25.8 7.5 82 142-223 112-196 (396)
277 cd08556 GDPD Glycerophosphodie 22.4 4.2E+02 0.0092 21.6 7.3 151 41-214 12-168 (189)
278 PRK07003 DNA polymerase III su 22.3 9.7E+02 0.021 25.6 11.6 95 108-208 100-197 (830)
279 PF01175 Urocanase: Urocanase; 22.2 2.7E+02 0.0059 27.7 6.4 118 46-177 106-244 (546)
280 cd04742 NPD_FabD 2-Nitropropan 22.2 3.1E+02 0.0067 26.6 6.9 89 119-214 6-103 (418)
281 COG2200 Rtn c-di-GMP phosphodi 22.0 5.6E+02 0.012 22.7 9.2 130 72-214 69-214 (256)
282 COG0502 BioB Biotin synthase a 21.8 4.2E+02 0.0091 24.9 7.4 134 39-193 84-234 (335)
283 TIGR02660 nifV_homocitr homoci 21.7 6.8E+02 0.015 23.6 10.2 24 39-62 20-43 (365)
284 PRK03031 rnpA ribonuclease P; 21.7 3.9E+02 0.0085 20.8 6.8 64 83-155 47-114 (122)
285 PRK11840 bifunctional sulfur c 21.7 6.7E+02 0.014 23.4 11.5 70 106-176 146-216 (326)
286 cd00668 Ile_Leu_Val_MetRS_core 21.6 1.4E+02 0.0031 27.4 4.4 49 109-160 81-131 (312)
287 PRK06298 type III secretion sy 21.4 90 0.002 29.5 3.1 26 196-221 293-318 (356)
288 PRK06256 biotin synthase; Vali 21.3 6.5E+02 0.014 23.2 11.7 102 39-157 91-201 (336)
289 PF01081 Aldolase: KDPG and KH 21.3 1.1E+02 0.0025 26.2 3.4 45 159-211 60-106 (196)
290 PF00388 PI-PLC-X: Phosphatidy 21.3 64 0.0014 25.9 1.9 21 46-66 30-50 (146)
291 PF13518 HTH_28: Helix-turn-he 21.3 1.2E+02 0.0026 19.0 2.8 22 255-277 14-35 (52)
292 PLN02389 biotin synthase 21.3 7.2E+02 0.016 23.7 12.4 102 39-157 116-227 (379)
293 PF08418 Pol_alpha_B_N: DNA po 21.2 91 0.002 27.7 3.0 49 250-299 9-60 (253)
294 COG0159 TrpA Tryptophan syntha 21.2 6.2E+02 0.013 22.9 11.3 121 110-267 2-150 (265)
295 PRK14463 ribosomal RNA large s 20.9 7.1E+02 0.015 23.4 10.0 87 131-217 211-325 (349)
296 PRK05441 murQ N-acetylmuramic 20.9 6.5E+02 0.014 23.0 8.7 58 115-175 119-176 (299)
297 PF13167 GTP-bdg_N: GTP-bindin 20.8 44 0.00096 25.0 0.7 67 251-319 8-81 (95)
298 COG0820 Predicted Fe-S-cluster 20.8 5E+02 0.011 24.5 7.7 87 130-217 215-330 (349)
299 cd08590 PI-PLCc_Rv2075c_like C 20.7 3.9E+02 0.0084 24.1 6.9 18 144-161 150-167 (267)
300 PF00072 Response_reg: Respons 20.7 3.2E+02 0.0069 19.8 5.6 55 126-183 42-98 (112)
301 PRK13523 NADPH dehydrogenase N 20.6 7E+02 0.015 23.3 11.3 23 39-61 132-161 (337)
302 COG4626 Phage terminase-like p 20.5 3.2E+02 0.007 27.4 6.7 46 138-183 408-453 (546)
303 cd07944 DRE_TIM_HOA_like 4-hyd 20.4 6.3E+02 0.014 22.6 13.9 24 39-62 17-40 (266)
304 cd02933 OYE_like_FMN Old yello 20.4 7.1E+02 0.015 23.2 13.4 24 39-62 142-172 (338)
305 TIGR00789 flhB_rel flhB C-term 20.3 1.4E+02 0.003 21.7 3.2 25 196-220 30-54 (82)
306 COG2159 Predicted metal-depend 20.1 4.3E+02 0.0093 24.1 7.2 94 120-215 55-166 (293)
307 PRK14468 ribosomal RNA large s 20.1 7.3E+02 0.016 23.3 10.5 95 83-177 91-199 (343)
308 cd00885 cinA Competence-damage 20.1 2.2E+02 0.0047 23.7 4.8 42 46-91 22-65 (170)
309 PRK10551 phage resistance prot 20.1 4.3E+02 0.0094 26.3 7.8 98 111-212 365-473 (518)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=5.4e-70 Score=502.02 Aligned_cols=306 Identities=42% Similarity=0.633 Sum_probs=273.6
Q ss_pred CCceecCCCCcccccceeccCcCCCCCCCCCCHHHHHHHHHHHHHcCCCEEeCccCcCCCChHHHHHHHHhccCC-CCcE
Q 019222 9 VPRVKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLP-RDKI 87 (344)
Q Consensus 9 m~~~~lg~tg~~vs~lg~G~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lG~~l~~~~-R~~~ 87 (344)
|++++||++|++||+||||||.+|+.+.. .+.+++.++|++|+++||||||||+.||. |.||++||++|++.. |+++
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~~~~-~~~~~a~~il~~A~d~Gin~~DTA~~Yg~-g~sE~ilG~~l~~~~~Rd~v 78 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGDTDD-EEEAEAIEILDAALDAGINFFDTADVYGD-GRSEEILGEALKERGRRDKV 78 (316)
T ss_pred CCceecCCCCceecceeeeccccCCCCCc-hhhhHHHHHHHHHHHcCCCEEECccccCC-CchHHHHHHHHhccCCCCeE
Confidence 78999999999999999999999875332 24557788999999999999999999998 899999999999864 8999
Q ss_pred EEEeccCcccCCCccc-CCCCCHHHHHHHHHHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCceeeEecCCC
Q 019222 88 QLATKFGCFMLDGVSI-GVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEA 166 (344)
Q Consensus 88 ~I~tK~~~~~~~~~~~-~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir~iGvS~~ 166 (344)
+|+||++......... ..+.++++|+++++.||+||||||||||++|||++..+.++++++|.+|+++||||+||+||+
T Consensus 79 vIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p~~e~~~aL~~l~~~G~ir~iG~S~~ 158 (316)
T COG0667 79 VIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETPIEETLEALDELVREGKIRYIGVSNY 158 (316)
T ss_pred EEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEecCC
Confidence 9999998776432111 257899999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHhhc-CCceEEeeeccccccccccchHHHHHHhCCcEEEcccCcccccCCCCCCCCCCchhhhhc-CCCCCch
Q 019222 167 SADTIRRAHAV-HPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAM-HPRFSGE 244 (344)
Q Consensus 167 ~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~l~~~~~~~~~~~~~~~~~-~~~~~~~ 244 (344)
+.+++.++++. .+++++|.+||+++++.+.+++++|+++||++++||||++|+|++++... ..+.+.. .+.|..+
T Consensus 159 ~~~~i~~a~~~~~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~G~Ltgk~~~~---~~~~r~~~~~~~~~~ 235 (316)
T COG0667 159 SAEQIAEALAVAAPIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLASGLLTGKYLPG---PEGSRASELPRFQRE 235 (316)
T ss_pred CHHHHHHHHHhcCCceeecccCccccccchhHHHHHHHHcCCeEEEecCccccccCCCcCCC---cchhhccccccchhh
Confidence 99999999999 59999999999999877777999999999999999999999999994332 1222222 2556667
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeccCCCCHHHHHHhHcccCCCCCHHHHHHHHhhCCC
Q 019222 245 NLEKNKLLYTRLETLAAKYGCTTPQLALAWLLHQGDDIVPIPGTTKITNLDNNIGSLALKLKEEDLKEICKTIPV 319 (344)
Q Consensus 245 ~~~~~~~~~~~l~~la~~~g~s~~q~al~w~l~~~~v~~~i~g~~~~~~l~~nl~a~~~~L~~e~~~~i~~~~~~ 319 (344)
..+........+.++|+++|+|++|+||+|++++|.|++||+|+++++||++|+++++..|++++++.|++....
T Consensus 236 ~~~~~~~~~~~l~~~a~~~g~t~aq~ALawvl~~~~v~~~I~Ga~~~~qL~en~~A~~~~L~~~~~~~l~~~~~~ 310 (316)
T COG0667 236 LTERGLAILRALEELAKELGATPAQVALAWVLAQPGVTSPIVGASKAEQLEENLAALDIKLSEEELAALDEISAE 310 (316)
T ss_pred hhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceEeecCCCHHHHHHHHHHhcCCCCHHHHHHHHHHhhh
Confidence 788889999999999999999999999999999999999999999999999999999999999999999988664
No 2
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=4.6e-69 Score=485.93 Aligned_cols=318 Identities=44% Similarity=0.693 Sum_probs=282.8
Q ss_pred CCCCCCceecCCCCcccccceeccCcCCCCCCCCCCHHHHHHHHHHHHHcCCCEEeCccCcCCCChHHHHHHHHhccC--
Q 019222 5 PQVHVPRVKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQL-- 82 (344)
Q Consensus 5 ~~~~m~~~~lg~tg~~vs~lg~G~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lG~~l~~~-- 82 (344)
....|.|+++|++|++||++|||||.+.. |+...+++++++++++|+++|+||||||++||+ +.||.++|++|++.
T Consensus 8 ~~~~~~~~~lg~~gl~Vs~lglG~m~~~~-~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~-~~~E~llg~~i~~~~~ 85 (336)
T KOG1575|consen 8 TELGMLRRKLGNSGLKVSPLGLGCMGWTT-FGGQIDKEEAFELLDHAYEAGINFFDTAEVYGN-GQSEELLGEFIKSRGW 85 (336)
T ss_pred chhcceeeeccCCCceecceeecceeeec-cccCCCHHHHHHHHHHHHHcCCCEEehhhhcCC-cccHHHHHHHHHhcCC
Confidence 45668999999999999999999975433 444468999999999999999999999999999 99999999999985
Q ss_pred CCCcEEEEeccCcccCCCcccCCCCCHHHHHHHHHHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCceeeEe
Q 019222 83 PRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIG 162 (344)
Q Consensus 83 ~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir~iG 162 (344)
+|++++|+||++.... +......++..+...++.||++||++||||||+||+|+..++++++++|.+++++|||||||
T Consensus 86 ~R~~vviaTK~~~~~~--~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~piee~m~aL~~lve~Gki~yiG 163 (336)
T KOG1575|consen 86 RRDKVVIATKFGFDYG--GETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVPIEETMRALTDLVEQGKIRYWG 163 (336)
T ss_pred cCCcEEEEEEEeccCC--CcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCCHHHHHHHHHHHHhcCceEEEE
Confidence 8999999999987651 22245778999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHhhcCC--ceEEeeecccccccc-ccchHHHHHHhCCcEEEcccCcccccCCC-CCCCCCCchhhhh--
Q 019222 163 LSEASADTIRRAHAVHP--ITAVQMEYSLWTREI-EDDIIPLCRELGIGIVAYSPLGRGFFAGK-AVVESLPSESILA-- 236 (344)
Q Consensus 163 vS~~~~~~l~~~~~~~~--~~~~q~~~n~~~~~~-~~~l~~~~~~~gi~v~a~spl~~G~l~~~-~~~~~~~~~~~~~-- 236 (344)
+|+++.+++.+++...+ +.++|++||++.++. +.+++++|+++||++++||||++|+|+++ ...++.+.++.+.
T Consensus 164 lSe~sa~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk~~~~e~~~~~~~~~~~ 243 (336)
T KOG1575|consen 164 LSEWSAEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTGKYKLGEDSRNGDKRFQF 243 (336)
T ss_pred eccCCHHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceeccCcccccccccccccccc
Confidence 99999999999999987 999999999999984 46799999999999999999999999999 4445555544332
Q ss_pred --cCCCCCchhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeccCCCCHHHHHHhHcccCCCCCHHHHHHHH
Q 019222 237 --MHPRFSGENLEKNKLLYTRLETLAAKYGCTTPQLALAWLLHQGDDIVPIPGTTKITNLDNNIGSLALKLKEEDLKEIC 314 (344)
Q Consensus 237 --~~~~~~~~~~~~~~~~~~~l~~la~~~g~s~~q~al~w~l~~~~v~~~i~g~~~~~~l~~nl~a~~~~L~~e~~~~i~ 314 (344)
..+++... +.++..++++.++|+++|+|++|+||+|+++++.|++||||+++++||+||++|+.+.|+++++.+|+
T Consensus 244 ~~~~~~~~~~--~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~ve~l~eni~Al~~~Lt~e~~~~l~ 321 (336)
T KOG1575|consen 244 LGLSPQTEEG--DKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKVSSPIPGASKIEQLKENIGALSVKLTPEEIKELE 321 (336)
T ss_pred cccccccchh--hhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCcHHHHHHHHhhhhccCCHHHHHHHH
Confidence 23333333 66788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCcCCCCCc
Q 019222 315 KTIPVDEVGGHRDY 328 (344)
Q Consensus 315 ~~~~~~~~~~~~~~ 328 (344)
++.+.....+.++.
T Consensus 322 ~~~~~~~~~~~~~~ 335 (336)
T KOG1575|consen 322 EIIDKILGFGPRSI 335 (336)
T ss_pred HhhccccCcCCCCC
Confidence 99998888887764
No 3
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=3e-64 Score=446.82 Aligned_cols=258 Identities=32% Similarity=0.540 Sum_probs=232.6
Q ss_pred CCceecCCCCcccccceeccCcCCCCCCCCCCHHHHHHHHHHHHHcCCCEEeCccCcCCCChHHHHHHHHhccC--CCCc
Q 019222 9 VPRVKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQL--PRDK 86 (344)
Q Consensus 9 m~~~~lg~tg~~vs~lg~G~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lG~~l~~~--~R~~ 86 (344)
+++.+| ++|.+||.||||||+++. .+.+.+.+.+|++.|+|+||||..||+ |+.+|+++++. +|++
T Consensus 3 ~~~~~l-~~g~~iP~iGlGt~~~~~-------~~~~~~av~~Al~~Gyr~IDTA~~Ygn----E~~VG~aI~~s~v~Ree 70 (280)
T COG0656 3 KTKVTL-NNGVEIPAIGLGTWQIGD-------DEWAVRAVRAALELGYRLIDTAEIYGN----EEEVGEAIKESGVPREE 70 (280)
T ss_pred Cceeec-CCCCcccCcceEeeecCC-------chhHHHHHHHHHHhCcceEecHhHhcC----HHHHHHHHHhcCCCHHH
Confidence 456677 677889999999999742 233889999999999999999999998 99999999985 8999
Q ss_pred EEEEeccCcccCCCcccCCCCCHHHHHHHHHHHHhhcCCCcceEEEecCCCCC--CCHHHHHHHHHHHHHcCceeeEecC
Q 019222 87 IQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS--VSIEDTMGELKKLVEEGKIKYIGLS 164 (344)
Q Consensus 87 ~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~--~~~~e~~~~L~~l~~~G~ir~iGvS 164 (344)
+||+||++.. ..+++.+.+++++||++||+||||||+||||.+. ..+.|+|++||+++++||||+||||
T Consensus 71 lFittKvw~~---------~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ir~IGVS 141 (280)
T COG0656 71 LFITTKVWPS---------DLGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGLIRAIGVS 141 (280)
T ss_pred eEEEeecCCc---------cCCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCCccEEEee
Confidence 9999999977 4478999999999999999999999999999763 2368999999999999999999999
Q ss_pred CCcHHHHHHHhhcC--CceEEeeeccccccccccchHHHHHHhCCcEEEcccCcccc-cCCCCCCCCCCchhhhhcCCCC
Q 019222 165 EASADTIRRAHAVH--PITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGF-FAGKAVVESLPSESILAMHPRF 241 (344)
Q Consensus 165 ~~~~~~l~~~~~~~--~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~-l~~~~~~~~~~~~~~~~~~~~~ 241 (344)
||+.++|+++++.. .|++||++||++.+.. +++++|+++||.++|||||++|. +...
T Consensus 142 NF~~~~L~~l~~~~~~~p~~NQIe~hp~~~q~--el~~~~~~~gI~v~AysPL~~g~~l~~~------------------ 201 (280)
T COG0656 142 NFGVEHLEELLSLAKVKPAVNQIEYHPYLRQP--ELLPFCQRHGIAVEAYSPLAKGGKLLDN------------------ 201 (280)
T ss_pred CCCHHHHHHHHHhcCCCCceEEEEeccCCCcH--HHHHHHHHcCCEEEEECCcccccccccC------------------
Confidence 99999999998874 4899999999999965 49999999999999999999653 3221
Q ss_pred CchhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeccCCCCHHHHHHhHcccCCCCCHHHHHHHHhhCCCCC
Q 019222 242 SGENLEKNKLLYTRLETLAAKYGCTTPQLALAWLLHQGDDIVPIPGTTKITNLDNNIGSLALKLKEEDLKEICKTIPVDE 321 (344)
Q Consensus 242 ~~~~~~~~~~~~~~l~~la~~~g~s~~q~al~w~l~~~~v~~~i~g~~~~~~l~~nl~a~~~~L~~e~~~~i~~~~~~~~ 321 (344)
+.+.+||++||.|++|++|+|+++++ ++|||.+++++|+++|++++++.||+|||++|+++.....
T Consensus 202 ------------~~l~~Ia~k~g~t~AQv~L~W~i~~g--v~~Ipks~~~~ri~eN~~~~~f~Ls~ed~~~i~~l~~~~~ 267 (280)
T COG0656 202 ------------PVLAEIAKKYGKTPAQVALRWHIQRG--VIVIPKSTTPERIRENLAAFDFELSEEDMAAIDALDRGYG 267 (280)
T ss_pred ------------hHHHHHHHHhCCCHHHHHHHHHHhCC--cEEecCCCCHHHHHHHHhhhcCCCCHHHHHHHHhhccccC
Confidence 48999999999999999999999999 8999999999999999999999999999999999988653
No 4
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=8.2e-63 Score=457.67 Aligned_cols=298 Identities=30% Similarity=0.452 Sum_probs=250.4
Q ss_pred ceecCCCCcccccceeccCcCCCCCCCCCCHHHHHHHHHHHHHcCCCEEeCccCcCCCChHHHHHHHHhccC--CCCcEE
Q 019222 11 RVKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQL--PRDKIQ 88 (344)
Q Consensus 11 ~~~lg~tg~~vs~lg~G~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lG~~l~~~--~R~~~~ 88 (344)
||+||++|++||+||||||++ +|...+.+++.++|+.|+++|||+||||+.||. |.||++||++|++. .|++++
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~---~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~-g~sE~~lG~~l~~~~~~R~~~~ 76 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVT---FGGQISDEMAEQLLTLAYENGINLFDTAEVYAA-GKAEVVLGNILKKKGWRRSSYV 76 (317)
T ss_pred CcccCCCCCeecceeecCCcc---CCCCCCHHHHHHHHHHHHHcCCCeEECccccCC-CccHHHHHHHHHhcCCCcccEE
Confidence 578999999999999999974 222347788999999999999999999999998 89999999999863 699999
Q ss_pred EEeccCcccCCCcccCCCCCHHHHHHHHHHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCceeeEecCCCcH
Q 019222 89 LATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASA 168 (344)
Q Consensus 89 I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir~iGvS~~~~ 168 (344)
|+||++...... .....+++.+++++++||+||||||||+|++|||++..+++++|++|++|+++||||+||+||++.
T Consensus 77 iaTK~~~~~~~~--~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~~~e~~~aL~~l~~~G~ir~iGvSn~~~ 154 (317)
T TIGR01293 77 ITTKIFWGGKAE--TERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTPMEETVRAMTYVINQGMAMYWGTSRWSS 154 (317)
T ss_pred EEeeeccCCCCC--CCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCCH
Confidence 999985421100 112468999999999999999999999999999998888999999999999999999999999999
Q ss_pred HHHHHHhhc------CCceEEeeecccccccc-ccchHHHHHHhCCcEEEcccCcccccCCCCCCCCCCchhhhhcCC--
Q 019222 169 DTIRRAHAV------HPITAVQMEYSLWTREI-EDDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAMHP-- 239 (344)
Q Consensus 169 ~~l~~~~~~------~~~~~~q~~~n~~~~~~-~~~l~~~~~~~gi~v~a~spl~~G~l~~~~~~~~~~~~~~~~~~~-- 239 (344)
+++.++... .+++++|++||+++++. +.+++++|+++||++++|+||++|+|++++... .+... +...+
T Consensus 155 ~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Ltg~~~~~-~~~~~-~~~~~~~ 232 (317)
T TIGR01293 155 MEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVSGKYDSG-IPPYS-RATLKGY 232 (317)
T ss_pred HHHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccCCCCCCC-CCCcc-ccccccc
Confidence 988776442 46789999999999863 567999999999999999999999999984322 22211 11111
Q ss_pred -CC----CchhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeccCCCCHHHHHHhHcccCC--CCCHHHHHH
Q 019222 240 -RF----SGENLEKNKLLYTRLETLAAKYGCTTPQLALAWLLHQGDDIVPIPGTTKITNLDNNIGSLAL--KLKEEDLKE 312 (344)
Q Consensus 240 -~~----~~~~~~~~~~~~~~l~~la~~~g~s~~q~al~w~l~~~~v~~~i~g~~~~~~l~~nl~a~~~--~L~~e~~~~ 312 (344)
.+ .++........++.|.++|+++|+|++|+||+|++++|+|+++|+|+++++|+++|++++++ +||++++++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~~~~Ls~e~~~~ 312 (317)
T TIGR01293 233 QWLKDKILSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSAEQLMENLGSLQVLPKLSSSIIHE 312 (317)
T ss_pred chhhhhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHHHhhccCCCCHHHHHH
Confidence 01 11222334567788999999999999999999999999999999999999999999999987 999999999
Q ss_pred HHhh
Q 019222 313 ICKT 316 (344)
Q Consensus 313 i~~~ 316 (344)
|+++
T Consensus 313 l~~~ 316 (317)
T TIGR01293 313 IDSI 316 (317)
T ss_pred HHhh
Confidence 9875
No 5
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=1.7e-62 Score=460.23 Aligned_cols=310 Identities=27% Similarity=0.471 Sum_probs=255.8
Q ss_pred CCCCCCceecCCCCcccccceeccCcCCCCCCCCCCHHHHHHHHHHHHHcCCCEEeCccCcCC-CChHHHHHHHHhccC-
Q 019222 5 PQVHVPRVKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGV-DHDNEIMVGKALKQL- 82 (344)
Q Consensus 5 ~~~~m~~~~lg~tg~~vs~lg~G~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~-~g~sE~~lG~~l~~~- 82 (344)
....|+|++||+||++||+||||||+. +|...+.+++.++|+.|+++||||||||+.||+ .|.||+.||++|++.
T Consensus 9 ~~~~m~~r~lg~tg~~vs~lglG~~~~---~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~ 85 (346)
T PRK09912 9 RYGQMQYRYCGKSGLRLPALSLGLWHN---FGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDF 85 (346)
T ss_pred CCCCcceeecCCCCcccccccccCccc---cCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhcc
Confidence 456699999999999999999999972 232235678899999999999999999999993 378999999999863
Q ss_pred --CCCcEEEEeccCcccCCCcccCCCCCHHHHHHHHHHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCceee
Q 019222 83 --PRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKY 160 (344)
Q Consensus 83 --~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir~ 160 (344)
.|+++||+||++...... ......+++.+++++++||+|||+||||+|++|+|+...+++++|++|++|+++||||+
T Consensus 86 ~~~Rd~~~I~TK~g~~~~~~-~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~GkIr~ 164 (346)
T PRK09912 86 AAYRDELIISTKAGYDMWPG-PYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALY 164 (346)
T ss_pred cCCCCeEEEEEEecccCCCC-cCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeE
Confidence 699999999997531111 11124689999999999999999999999999999988889999999999999999999
Q ss_pred EecCCCcHHHHHHHhhc-----CCceEEeeeccccccccc-cchHHHHHHhCCcEEEcccCcccccCCCCCCCCCCchhh
Q 019222 161 IGLSEASADTIRRAHAV-----HPITAVQMEYSLWTREIE-DDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESI 234 (344)
Q Consensus 161 iGvS~~~~~~l~~~~~~-----~~~~~~q~~~n~~~~~~~-~~l~~~~~~~gi~v~a~spl~~G~l~~~~~~~~~~~~~~ 234 (344)
||||||++++++++.+. .+++++|++||++++..+ .+++++|+++||++++|+||++|+|++++... .|....
T Consensus 165 iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt~~~~~~-~~~~~~ 243 (346)
T PRK09912 165 VGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGKYLNG-IPQDSR 243 (346)
T ss_pred EEecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCccccCCCCCC-CCCCcc
Confidence 99999999988765442 367899999999998654 46999999999999999999999999874221 121100
Q ss_pred hh----cCCCCCchh-hHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeccCCCCHHHHHHhHccc-CCCCCHH
Q 019222 235 LA----MHPRFSGEN-LEKNKLLYTRLETLAAKYGCTTPQLALAWLLHQGDDIVPIPGTTKITNLDNNIGSL-ALKLKEE 308 (344)
Q Consensus 235 ~~----~~~~~~~~~-~~~~~~~~~~l~~la~~~g~s~~q~al~w~l~~~~v~~~i~g~~~~~~l~~nl~a~-~~~L~~e 308 (344)
.. ..+.|.+.. .+..+...+.+.++|+++|+|++|+||+|++++|.|++||+|+++++||++|++++ .++|+++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~~~L~~e 323 (346)
T PRK09912 244 MHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIGASRAEQLEENVQALNNLTFSTE 323 (346)
T ss_pred ccccccchhhhchhhccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHhhhcCCCCCHH
Confidence 00 001121111 13345667889999999999999999999999999999999999999999999998 4899999
Q ss_pred HHHHHHhhCCC
Q 019222 309 DLKEICKTIPV 319 (344)
Q Consensus 309 ~~~~i~~~~~~ 319 (344)
++++|+++.+.
T Consensus 324 ~~~~l~~~~~~ 334 (346)
T PRK09912 324 ELAQIDQHIAD 334 (346)
T ss_pred HHHHHHHhhCc
Confidence 99999998754
No 6
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=1.8e-62 Score=460.76 Aligned_cols=306 Identities=28% Similarity=0.370 Sum_probs=253.5
Q ss_pred CCceecCCCCcccccceeccCcCCCCCCCCCCHHHHHHHHHHHHHcCCCEEeCccCcCC------CChHHHHHHHHhccC
Q 019222 9 VPRVKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGV------DHDNEIMVGKALKQL 82 (344)
Q Consensus 9 m~~~~lg~tg~~vs~lg~G~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~------~g~sE~~lG~~l~~~ 82 (344)
|+|++||+||++||+||||||++|. ..+.+++.++|+.|+++||||||||+.||. +|.||..||++|++.
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~----~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~ 76 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGE----QNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKR 76 (346)
T ss_pred CCceecCCCCCccccEeEeccccCC----CCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhc
Confidence 6899999999999999999999864 236788999999999999999999999983 278999999999854
Q ss_pred -CCCcEEEEeccCcccCCCc---ccCCCCCHHHHHHHHHHHHhhcCCCcceEEEecCCCC-----------------CCC
Q 019222 83 -PRDKIQLATKFGCFMLDGV---SIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDT-----------------SVS 141 (344)
Q Consensus 83 -~R~~~~I~tK~~~~~~~~~---~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~-----------------~~~ 141 (344)
.|++++|+||++....... ......+++.+++++++||+|||+||||||++|||+. ..+
T Consensus 77 ~~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~ 156 (346)
T PRK10625 77 GSREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVS 156 (346)
T ss_pred CCcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccccCCCC
Confidence 6999999999864221100 0112468999999999999999999999999999964 246
Q ss_pred HHHHHHHHHHHHHcCceeeEecCCCcHHHHHHHhhc------CCceEEeeeccccccccccchHHHHHHhCCcEEEcccC
Q 019222 142 IEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV------HPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPL 215 (344)
Q Consensus 142 ~~e~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~------~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl 215 (344)
++++|++|++|+++||||+||+|||+.+++++++.. ..++++|++||++++..+.+++++|+++||++++|+||
T Consensus 157 ~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via~spL 236 (346)
T PRK10625 157 LLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCL 236 (346)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEEeccc
Confidence 789999999999999999999999999888765432 35788999999999876678999999999999999999
Q ss_pred cccccCCCCCCCCCCchhhhhcCCCCCchhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeccCCCCHHHHH
Q 019222 216 GRGFFAGKAVVESLPSESILAMHPRFSGENLEKNKLLYTRLETLAAKYGCTTPQLALAWLLHQGDDIVPIPGTTKITNLD 295 (344)
Q Consensus 216 ~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~s~~q~al~w~l~~~~v~~~i~g~~~~~~l~ 295 (344)
++|+|+++......+..........|.....+...+..+.+.++|+++|+|++|+||+|++++|.|+++|+|+++++||+
T Consensus 237 ~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~~v~~~I~G~~~~~~l~ 316 (346)
T PRK10625 237 AFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTLLGATTMEQLK 316 (346)
T ss_pred cCeeccCCCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEeCCCCHHHHH
Confidence 99999987432222221100001112221223456677899999999999999999999999999999999999999999
Q ss_pred HhHcccCCCCCHHHHHHHHhhCC
Q 019222 296 NNIGSLALKLKEEDLKEICKTIP 318 (344)
Q Consensus 296 ~nl~a~~~~L~~e~~~~i~~~~~ 318 (344)
+|+++++++|++++++.|+++.+
T Consensus 317 en~~a~~~~L~~~~~~~l~~~~~ 339 (346)
T PRK10625 317 TNIESLHLTLSEEVLAEIEAVHQ 339 (346)
T ss_pred HHHhhccCCCCHHHHHHHHHHHh
Confidence 99999999999999999999864
No 7
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=4.7e-60 Score=438.78 Aligned_cols=287 Identities=29% Similarity=0.472 Sum_probs=244.9
Q ss_pred ceecCCCCcccccceeccCcCCCCCCCCCCHHHHHHHHHHHHHcCCCEEeCccCcCCCChHHHHHHHHhccC--CCCcEE
Q 019222 11 RVKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQL--PRDKIQ 88 (344)
Q Consensus 11 ~~~lg~tg~~vs~lg~G~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lG~~l~~~--~R~~~~ 88 (344)
||+||+||++||+||||||++|..|+. .+.+++.+++++|++.||||||||+.||+ |.||+.+|++|++. .|+++|
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~~~~-~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~-g~sE~~lG~al~~~~~~R~~v~ 78 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSVFGP-VSEEDAIASVREAFRLGINFFDTSPYYGG-TLSEKVLGKALKALGIPREKYV 78 (314)
T ss_pred CCcCCCCCCcccCcccccccccCCCCC-CCHHHHHHHHHHHHHcCCCEEECcCccCC-CchHHHHHHHHHhCCCCcceEE
Confidence 688999999999999999999876664 47889999999999999999999999998 99999999999873 699999
Q ss_pred EEeccCcccCCCcccCCCCCHHHHHHHHHHHHhhcCCCcceEEEecCCCCC---CCHHHHHHHHHHHHHcCceeeEecCC
Q 019222 89 LATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS---VSIEDTMGELKKLVEEGKIKYIGLSE 165 (344)
Q Consensus 89 I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~---~~~~e~~~~L~~l~~~G~ir~iGvS~ 165 (344)
|+||++.... ..+++++.+++++++||++||+||||+|++|+|+.. .+++++|++|++|+++||||+||+||
T Consensus 79 I~TK~~~~~~-----~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn 153 (314)
T PLN02587 79 VSTKCGRYGE-----GFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGKVRFIGITG 153 (314)
T ss_pred EEeccccCCC-----CCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCCeEEEEecC
Confidence 9999974321 024689999999999999999999999999999642 35678999999999999999999999
Q ss_pred CcHHHHHHHhhc---C--CceEEeeeccccccccccchHHHHHHhCCcEEEcccCcccccCCCCCCCCCCchhhhhcCCC
Q 019222 166 ASADTIRRAHAV---H--PITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAMHPR 240 (344)
Q Consensus 166 ~~~~~l~~~~~~---~--~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~l~~~~~~~~~~~~~~~~~~~~ 240 (344)
++.++++.+... . .+..+|+.||+.++.. .+++++|+++||++++|+||++|+|+++..+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ll~~~~~~gi~v~a~spl~~G~L~~~~~~~------------- 219 (314)
T PLN02587 154 LPLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSL-EDLLPYLKSKGVGVISASPLAMGLLTENGPPE------------- 219 (314)
T ss_pred CCHHHHHHHHHhhhcCCCCeEEeccccCcchhhH-HHHHHHHHHcCceEEEechhhccccCCCCCCC-------------
Confidence 999888776543 2 2344678999887643 47999999999999999999999999862110
Q ss_pred CCchhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeccCCCCHHHHHHhHcccC----CCCCHHHHHHHHhh
Q 019222 241 FSGENLEKNKLLYTRLETLAAKYGCTTPQLALAWLLHQGDDIVPIPGTTKITNLDNNIGSLA----LKLKEEDLKEICKT 316 (344)
Q Consensus 241 ~~~~~~~~~~~~~~~l~~la~~~g~s~~q~al~w~l~~~~v~~~i~g~~~~~~l~~nl~a~~----~~L~~e~~~~i~~~ 316 (344)
+.+ ..+......+.+.++|+++|+|++|+||+|++++|.|++||+|+++++|+++|++++. .+|+++++++|+++
T Consensus 220 ~~~-~~~~~~~~~~~l~~~a~~~~~s~aq~al~~~l~~~~v~~~i~G~~~~~~l~~nl~a~~~~~~~~l~~~~~~~l~~~ 298 (314)
T PLN02587 220 WHP-APPELKSACAAAATHCKEKGKNISKLALQYSLSNKDISTTLVGMNSVQQVEENVAAATELETSGIDEELLSEVEAI 298 (314)
T ss_pred CCC-CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEecCCCHHHHHHHHHHHhhcccCCCCHHHHHHHHHh
Confidence 110 1133456677889999999999999999999999999999999999999999999976 37999999999998
Q ss_pred CCC
Q 019222 317 IPV 319 (344)
Q Consensus 317 ~~~ 319 (344)
...
T Consensus 299 ~~~ 301 (314)
T PLN02587 299 LAP 301 (314)
T ss_pred hcc
Confidence 763
No 8
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=2.5e-59 Score=415.20 Aligned_cols=260 Identities=30% Similarity=0.466 Sum_probs=232.8
Q ss_pred ceecCCCCcccccceeccCcCCCCCCCCCCHHHHHHHHHHHHHcCCCEEeCccCcCCCChHHHHHHHHhccC------CC
Q 019222 11 RVKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQL------PR 84 (344)
Q Consensus 11 ~~~lg~tg~~vs~lg~G~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lG~~l~~~------~R 84 (344)
+.+| ++|.+||.||||||+. +..++...++.|++.||||||||..||| |..+|++|++. +|
T Consensus 6 ~~~L-n~G~~mP~iGlGTw~~--------~~~~~~~aV~~Al~~GYRHIDtA~~Y~N----E~evG~aik~~i~~~~v~R 72 (300)
T KOG1577|consen 6 TVKL-NNGFKMPIIGLGTWQS--------PPGQVAEAVKAAIKAGYRHIDTAHVYGN----EKEVGEAIKELLAEGGVKR 72 (300)
T ss_pred eEec-cCCCccceeeeEeccc--------ChhhHHHHHHHHHHhCcceeechhhhCC----hHHHHHHHHHHhhhCCcch
Confidence 6778 9999999999999983 5678999999999999999999999999 99999999852 99
Q ss_pred CcEEEEeccCcccCCCcccCCCCCHHHHHHHHHHHHhhcCCCcceEEEecCCCCC----------------CCHHHHHHH
Q 019222 85 DKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS----------------VSIEDTMGE 148 (344)
Q Consensus 85 ~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~----------------~~~~e~~~~ 148 (344)
+++||+||+++.. ..++.++.++++||++||+||+|||++|||-.. .+..++|++
T Consensus 73 ediFiTSKlw~~~---------~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~tW~a 143 (300)
T KOG1577|consen 73 EDIFITSKLWPTD---------HAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIETWKA 143 (300)
T ss_pred hhheeeeccCccc---------cChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHHHHHH
Confidence 9999999999763 478999999999999999999999999999553 346789999
Q ss_pred HHHHHHcCceeeEecCCCcHHHHHHHhhc--CCceEEeeeccccccccccchHHHHHHhCCcEEEcccCcccccCCCCCC
Q 019222 149 LKKLVEEGKIKYIGLSEASADTIRRAHAV--HPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGFFAGKAVV 226 (344)
Q Consensus 149 L~~l~~~G~ir~iGvS~~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~l~~~~~~ 226 (344)
||+++++|++|+||||||+..++++++.. .+|.++|++++++.+ +.+++++|+++||.|.|||||+.+-- +.
T Consensus 144 mE~~~~~Gl~rsIGVSNF~~~~le~ll~~~ki~P~vnQvE~HP~~~--Q~~L~~fCk~~~I~v~AYSpLg~~~~-~~--- 217 (300)
T KOG1577|consen 144 MEKLVDEGLVRSIGVSNFNIKQLEELLNLAKIKPAVNQVECHPYLQ--QKKLVEFCKSKGIVVTAYSPLGSPGR-GS--- 217 (300)
T ss_pred HHHHHHcCCceEeeeecCCHHHHHHHHhcCCCCCccceeeccCCcC--hHHHHHHHhhCCcEEEEecCCCCCCC-cc---
Confidence 99999999999999999999999999887 568999999999888 45799999999999999999997521 00
Q ss_pred CCCCchhhhhcCCCCCchhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeccCCCCHHHHHHhHcccCCCCC
Q 019222 227 ESLPSESILAMHPRFSGENLEKNKLLYTRLETLAAKYGCTTPQLALAWLLHQGDDIVPIPGTTKITNLDNNIGSLALKLK 306 (344)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~s~~q~al~w~l~~~~v~~~i~g~~~~~~l~~nl~a~~~~L~ 306 (344)
. .-..+.+.+||++||.|++|++|||.++++ ++|||.++++++++||++++++.||
T Consensus 218 -~---------------------ll~~~~l~~iA~K~~kt~aQIlLrw~~q~g--~~vipKS~~~~Ri~eN~~vfdf~Lt 273 (300)
T KOG1577|consen 218 -D---------------------LLEDPVLKEIAKKYNKTPAQILLRWALQRG--VSVIPKSSNPERIKENFKVFDFELT 273 (300)
T ss_pred -c---------------------cccCHHHHHHHHHhCCCHHHHHHHHHHhCC--cEEEeccCCHHHHHHHHhhccccCC
Confidence 0 011258999999999999999999999999 8999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCCc
Q 019222 307 EEDLKEICKTIPVDEV 322 (344)
Q Consensus 307 ~e~~~~i~~~~~~~~~ 322 (344)
++|++.|+......+.
T Consensus 274 ~ed~~~i~~~~~~~r~ 289 (300)
T KOG1577|consen 274 EEDMKKLDSLNSNERY 289 (300)
T ss_pred HHHHHHHhhcccccee
Confidence 9999999988776543
No 9
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=2.8e-58 Score=421.92 Aligned_cols=281 Identities=41% Similarity=0.664 Sum_probs=249.8
Q ss_pred ceecCCCCcccccceeccCcCCCCCCCCCCHHHHHHHHHHHHHcCCCEEeCccCcCCCChHHHHHHHHhccCC-CCcEEE
Q 019222 11 RVKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLP-RDKIQL 89 (344)
Q Consensus 11 ~~~lg~tg~~vs~lg~G~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lG~~l~~~~-R~~~~I 89 (344)
+++||+||++||+||||||.++..+ .+.+++.++++.|++.|||+||||+.||+ |.||+.+|++|++.. |++++|
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~~---~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~-g~sE~~lG~al~~~~~R~~~~i 76 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGGY---VDEEEAAAAVRAALDAGINFIDTADVYGD-GESEELLGEALKERGPREEVFI 76 (285)
T ss_pred CcccCCCCceecCcceeccccCCCC---CCHHHHHHHHHHHHHcCCCeEECccccCC-CCCHHHHHHHHhccCCcCcEEE
Confidence 5789999999999999999987655 36789999999999999999999999998 899999999999864 999999
Q ss_pred EeccCcccCCCcccCCCCCHHHHHHHHHHHHhhcCCCcceEEEecCCCCCCC-HHHHHHHHHHHHHcCceeeEecCCCcH
Q 019222 90 ATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVS-IEDTMGELKKLVEEGKIKYIGLSEASA 168 (344)
Q Consensus 90 ~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~-~~e~~~~L~~l~~~G~ir~iGvS~~~~ 168 (344)
+||++...... .+.+++.+++++++||++|++||||+|+||+|+.... ..++|++|++++++|+||+|||||++.
T Consensus 77 ~tK~~~~~~~~----~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~ 152 (285)
T cd06660 77 ATKVGPRPGDG----RDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIGVSNFSA 152 (285)
T ss_pred EeeecCCCCCC----CCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEEEeeCCCH
Confidence 99998653211 3568999999999999999999999999999987766 889999999999999999999999999
Q ss_pred HHHHHHhhc--CCceEEeeeccccccccccchHHHHHHhCCcEEEcccCcccccCCCCCCCCCCchhhhhcCCCCCchhh
Q 019222 169 DTIRRAHAV--HPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAMHPRFSGENL 246 (344)
Q Consensus 169 ~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (344)
+.+.+++.. .+++++|++||++++....+++++|+++||++++|+||++|.++++......+.
T Consensus 153 ~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~~~~~~--------------- 217 (285)
T cd06660 153 EQLEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAGGLLTGKYLPGAPPP--------------- 217 (285)
T ss_pred HHHHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccCceecCCCCCCCCCC---------------
Confidence 999999888 799999999999999765579999999999999999999999887622111100
Q ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeccCCCCHHHHHHhHcccCCCCCHHHHHHHHhh
Q 019222 247 EKNKLLYTRLETLAAKYGCTTPQLALAWLLHQGDDIVPIPGTTKITNLDNNIGSLALKLKEEDLKEICKT 316 (344)
Q Consensus 247 ~~~~~~~~~l~~la~~~g~s~~q~al~w~l~~~~v~~~i~g~~~~~~l~~nl~a~~~~L~~e~~~~i~~~ 316 (344)
.......+..++++++.|++|+||+|++++|.+++||+|+++++|+++|++++.++|++++++.|+++
T Consensus 218 --~~~~~~~~~~~~~~~~~s~~q~al~~~l~~p~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~l~~~ 285 (285)
T cd06660 218 --EGDLLEALKEIAEKHGVTPAQVALRWLLQQPGVTSVIPGASSPERLEENLAALDFELSDEDLAALDAL 285 (285)
T ss_pred --hhhHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHhhccCCCCHHHHHHHhhC
Confidence 01134679999999999999999999999999999999999999999999999999999999999863
No 10
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=8.8e-58 Score=418.71 Aligned_cols=274 Identities=31% Similarity=0.468 Sum_probs=237.1
Q ss_pred ceecCCCCcccccceeccCcCCC--CCCCCCCHHHHHHHHHHHHHcCCCEEeCccCcCCCChHHHHHHHHhccCCCCcEE
Q 019222 11 RVKLGSQGLEVSRLGFGCGGLSG--IYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQ 88 (344)
Q Consensus 11 ~~~lg~tg~~vs~lg~G~~~~g~--~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lG~~l~~~~R~~~~ 88 (344)
+.+|+ |++||+||||||++|+ .||...+.+++.++|+.|++.||||||||+.||+ |.+|+.+|++++. .|++++
T Consensus 9 ~~~l~--g~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~-~~sE~~lg~~l~~-~R~~~~ 84 (290)
T PRK10376 9 TFTLG--GRSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGP-HVTNQLIREALHP-YPDDLT 84 (290)
T ss_pred ceecC--CeeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCC-CcHHHHHHHHHhc-CCCeEE
Confidence 44563 8999999999999975 3665457788999999999999999999999998 8899999999975 699999
Q ss_pred EEeccCcccCCCcccCCCCCHHHHHHHHHHHHhhcCCCcceEEEecCCC-----CCCCHHHHHHHHHHHHHcCceeeEec
Q 019222 89 LATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVD-----TSVSIEDTMGELKKLVEEGKIKYIGL 163 (344)
Q Consensus 89 I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~-----~~~~~~e~~~~L~~l~~~G~ir~iGv 163 (344)
|+||++......+.+....+++.+++++++||+||||||||+|++|+++ ...+++++|++|++|+++||||+|||
T Consensus 85 i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~l~~~Gkir~iGv 164 (290)
T PRK10376 85 IVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAELQRQGLVRHIGL 164 (290)
T ss_pred EEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHHHHHCCceeEEEe
Confidence 9999875432211122356899999999999999999999999988742 12357899999999999999999999
Q ss_pred CCCcHHHHHHHhhcCCceEEeeeccccccccccchHHHHHHhCCcEEEcccCcccccCCCCCCCCCCchhhhhcCCCCCc
Q 019222 164 SEASADTIRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAMHPRFSG 243 (344)
Q Consensus 164 S~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~l~~~~~~~~~~~~~~~~~~~~~~~ 243 (344)
|||+.++++++.+..+++++|++||++++.. .+++++|+++||++++|+||+++.. +
T Consensus 165 Sn~~~~~l~~~~~~~~~~~~q~~~~~~~~~~-~~~~~~~~~~gi~v~a~~pL~g~~~--------------------~-- 221 (290)
T PRK10376 165 SNVTPTQVAEARKIAEIVCVQNHYNLAHRAD-DALIDALARDGIAYVPFFPLGGFTP--------------------L-- 221 (290)
T ss_pred cCCCHHHHHHHHhhCCeEEEecccCCCcCCh-HHHHHHHHHcCCEEEEeecCCCCCh--------------------h--
Confidence 9999999999988889999999999999753 5799999999999999999974310 0
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeccCCCCHHHHHHhHcccCCCCCHHHHHHHHhhCCC
Q 019222 244 ENLEKNKLLYTRLETLAAKYGCTTPQLALAWLLHQGDDIVPIPGTTKITNLDNNIGSLALKLKEEDLKEICKTIPV 319 (344)
Q Consensus 244 ~~~~~~~~~~~~l~~la~~~g~s~~q~al~w~l~~~~v~~~i~g~~~~~~l~~nl~a~~~~L~~e~~~~i~~~~~~ 319 (344)
..+.+.++|+++|+|++|+||+|+++++.++++|+|+++++|+++|+++++++|++++++.|+++.+.
T Consensus 222 --------~~~~l~~ia~~~~~t~aq~al~w~l~~~~~~~~i~G~~~~~~l~en~~a~~~~L~~e~~~~l~~~~~~ 289 (290)
T PRK10376 222 --------QSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENLAAAELVLSEEVLAELDGIARE 289 (290)
T ss_pred --------hhHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEeeCCCCHHHHHHHHhhccCCCCHHHHHHHHHHHhc
Confidence 02578999999999999999999999877788999999999999999999999999999999988653
No 11
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=4.7e-57 Score=409.15 Aligned_cols=246 Identities=28% Similarity=0.418 Sum_probs=221.0
Q ss_pred cccccceeccCcCCCCCCCCCCHHHHHHHHHHHHHcCCCEEeCccCcCCCChHHHHHHHHhccC--CCCcEEEEeccCcc
Q 019222 19 LEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQL--PRDKIQLATKFGCF 96 (344)
Q Consensus 19 ~~vs~lg~G~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lG~~l~~~--~R~~~~I~tK~~~~ 96 (344)
++||+||||||++ ..+++.++++.|++.||||||||+.||+ |+.+|++|++. +|+++||+||++..
T Consensus 1 ~~vs~lglGt~~~--------~~~~~~~~i~~A~~~Gi~~~DTA~~Yg~----E~~lG~al~~~~~~R~~v~i~TK~~~~ 68 (267)
T PRK11172 1 MSIPAFGLGTFRL--------KDQVVIDSVKTALELGYRAIDTAQIYDN----EAAVGQAIAESGVPRDELFITTKIWID 68 (267)
T ss_pred CCCCCEeeEcccc--------ChHHHHHHHHHHHHcCCCEEEccchhCC----HHHHHHHHHHcCCChhHeEEEEEeCCC
Confidence 3699999999986 3467999999999999999999999997 99999999853 69999999998532
Q ss_pred cCCCcccCCCCCHHHHHHHHHHHHhhcCCCcceEEEecCCCCC--CCHHHHHHHHHHHHHcCceeeEecCCCcHHHHHHH
Q 019222 97 MLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS--VSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRA 174 (344)
Q Consensus 97 ~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~--~~~~e~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~ 174 (344)
..+++.+++++++||+|||+||||+|++|||++. .+.+++|++|++|+++||||+||||||+.++++++
T Consensus 69 ---------~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~ 139 (267)
T PRK11172 69 ---------NLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTREIGISNFTIALMKQA 139 (267)
T ss_pred ---------CCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHH
Confidence 3478999999999999999999999999999763 56789999999999999999999999999999888
Q ss_pred hhc---CCceEEeeeccccccccccchHHHHHHhCCcEEEcccCcccccCCCCCCCCCCchhhhhcCCCCCchhhHHHHH
Q 019222 175 HAV---HPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAMHPRFSGENLEKNKL 251 (344)
Q Consensus 175 ~~~---~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (344)
++. .+++++|++||++++. .+++++|+++||++++|+||++|.+...
T Consensus 140 ~~~~~~~~~~~~Q~~~~~~~~~--~~ll~~~~~~gi~v~a~spl~~G~~~~~---------------------------- 189 (267)
T PRK11172 140 IAAVGAENIATNQIELSPYLQN--RKVVAFAKEHGIHVTSYMTLAYGKVLKD---------------------------- 189 (267)
T ss_pred HHhcCCCCCeEEeeecCCCCCc--HHHHHHHHHCCCEEEEECCCCCCcccCC----------------------------
Confidence 764 3689999999999884 5799999999999999999999864321
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeccCCCCHHHHHHhHcccCCCCCHHHHHHHHhhCCC
Q 019222 252 LYTRLETLAAKYGCTTPQLALAWLLHQGDDIVPIPGTTKITNLDNNIGSLALKLKEEDLKEICKTIPV 319 (344)
Q Consensus 252 ~~~~l~~la~~~g~s~~q~al~w~l~~~~v~~~i~g~~~~~~l~~nl~a~~~~L~~e~~~~i~~~~~~ 319 (344)
+.+.++|+++|+|++|+||+|+++++ .+||+|+++++|+++|+++++++||++++++|+++.+.
T Consensus 190 --~~l~~~a~~~~~s~aqval~w~l~~~--~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~i~~~~~~ 253 (267)
T PRK11172 190 --PVIARIAAKHNATPAQVILAWAMQLG--YSVIPSSTKRENLASNLLAQDLQLDAEDMAAIAALDRN 253 (267)
T ss_pred --HHHHHHHHHhCCCHHHHHHHHHHhCC--CEeecCCCCHHHHHHHHhhcCCCcCHHHHHHHhhhccC
Confidence 36889999999999999999999997 57999999999999999999999999999999999754
No 12
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=2.4e-57 Score=415.35 Aligned_cols=276 Identities=36% Similarity=0.571 Sum_probs=231.8
Q ss_pred cceeccCcCCCCCCCCCCHHHHHHHHHHHHHcCCCEEeCccCcCCCChHHHHHHHHhcc--CCCCcEEEEeccCcccCCC
Q 019222 23 RLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ--LPRDKIQLATKFGCFMLDG 100 (344)
Q Consensus 23 ~lg~G~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lG~~l~~--~~R~~~~I~tK~~~~~~~~ 100 (344)
+||||||++|+. ..+.+++.++|+.|++.|||+||||+.||+ |.||+.+|++|++ .+|++++|+||+...
T Consensus 1 ~l~lG~~~~~~~---~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~-g~sE~~lg~~l~~~~~~r~~~~i~tK~~~~---- 72 (283)
T PF00248_consen 1 PLGLGTWRLGGE---RVSEEEAEAILRRALEAGINFFDTADSYGN-GRSERILGRALRKSRVPRDDIFISTKVYGD---- 72 (283)
T ss_dssp SBEEECTTBTTT---TSTHHHHHHHHHHHHHTT--EEEECGGGGG-GTHHHHHHHHHHHTSSTGGGSEEEEEEESS----
T ss_pred CEEEEccccCCC---CCCHHHHHHHHHHHHHcCCCeecccccccc-cccccccccccccccccccccccccccccc----
Confidence 589999998754 358999999999999999999999999987 8899999999998 499999999999211
Q ss_pred cccCCCCCHHHHHHHHHHHHhhcCCCcceEEEecCCCCCCC-HHHHHHHHHHHHHcCceeeEecCCCcHHHHHHH--hhc
Q 019222 101 VSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVS-IEDTMGELKKLVEEGKIKYIGLSEASADTIRRA--HAV 177 (344)
Q Consensus 101 ~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~-~~e~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~--~~~ 177 (344)
.......+++.+++++++||++||+||||+|++|+|+.... .+++|++|++|+++|+||+||||||+++.++.+ ...
T Consensus 73 ~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~ 152 (283)
T PF00248_consen 73 GKPEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQLEAALKIGS 152 (283)
T ss_dssp SSTGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHTCTS
T ss_pred ccccccccccccccccccccccccccchhccccccccccccccchhhhhhhhcccccccccccccccccccccccccccc
Confidence 11233679999999999999999999999999999999888 999999999999999999999999999999999 555
Q ss_pred CCceEEeeeccccccccccchHHHHHHhCCcEEEcccCcccccCCCCCCC-CCCchhhhhcCCCCCchhhHHHHHHHHHH
Q 019222 178 HPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGFFAGKAVVE-SLPSESILAMHPRFSGENLEKNKLLYTRL 256 (344)
Q Consensus 178 ~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 256 (344)
.+++++|++||++++....+++++|+++||++++|+||++|+|+++.... ..+....+ .......+.+
T Consensus 153 ~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~G~l~~~~~~~~~~~~~~~~-----------~~~~~~~~~l 221 (283)
T PF00248_consen 153 IPPDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAGGLLTGKYKSPPPPPSRASL-----------RDAQELADAL 221 (283)
T ss_dssp S-ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGGGCGGTTTTTTTTSTTTSGS-----------STHGGGHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccCccccccccCCCccccccc-----------chhhhhhhhh
Confidence 78999999999997766789999999999999999999999999873221 11110000 0033456789
Q ss_pred HHHHHHhCCCHHHHHHHHHHhCCCCeEeccCCCCHHHHHHhHcccCCCCCHHHHHHHHhhC
Q 019222 257 ETLAAKYGCTTPQLALAWLLHQGDDIVPIPGTTKITNLDNNIGSLALKLKEEDLKEICKTI 317 (344)
Q Consensus 257 ~~la~~~g~s~~q~al~w~l~~~~v~~~i~g~~~~~~l~~nl~a~~~~L~~e~~~~i~~~~ 317 (344)
.++++++|+|++|+||+|+++++.+.+||+|+++++|+++|+++++++||++++++|++++
T Consensus 222 ~~~a~~~g~s~~q~al~~~l~~~~~~~~i~g~~~~~~l~en~~a~~~~L~~~~~~~i~~~~ 282 (283)
T PF00248_consen 222 RELAEEHGVSPAQLALRWVLSHPGVASVIVGASSPEHLEENLAALDFPLTEEELAEIDQIL 282 (283)
T ss_dssp HHHHHHHTSSHHHHHHHHHHTSHTTEEEEEB-SSHHHHHHHHGGSSSG--HHHHHHHHTTH
T ss_pred hhhhhhcccccchhhhhhhhhccccccccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999999999999874
No 13
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=5.7e-56 Score=406.05 Aligned_cols=270 Identities=17% Similarity=0.226 Sum_probs=229.7
Q ss_pred CcccccceeccCcCCCC-------CCCCCCHHHHHHHHHHHHHcCCCEEeCccCcCCCChHHHHHHHHhccCCCCcEEEE
Q 019222 18 GLEVSRLGFGCGGLSGI-------YNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLA 90 (344)
Q Consensus 18 g~~vs~lg~G~~~~g~~-------~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lG~~l~~~~R~~~~I~ 90 (344)
+++||+||||||++|+. |+. .+.+++.++|+.|++.||||||||+.||. ||+.+|++|++..+++++|+
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~-~~~~ea~~~l~~A~~~Gin~~DTA~~YG~---SE~~lG~al~~~~~~~~~i~ 77 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGR-TPEAEARDILNIAARAGLSVLDASGLFGR---AETVLGQLIPRPVPFRVTLS 77 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCC-CCHHHHHHHHHHHHHcCCCEEecchhhhh---HHHHHhhhhccCCceEeecc
Confidence 57899999999999854 443 48899999999999999999999999987 99999999985334678999
Q ss_pred eccCcccCCCcccCCCCCHHHHHHHHHHHHhhcCCCcceEEEecCCCCC-CCH-HHHHHHHHHHHHcCceeeEecCCCcH
Q 019222 91 TKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS-VSI-EDTMGELKKLVEEGKIKYIGLSEASA 168 (344)
Q Consensus 91 tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~-~~~-~e~~~~L~~l~~~G~ir~iGvS~~~~ 168 (344)
||.. ..+++.+++++++||+|||+||||+|++|+|++. .+. +++|++|++|+++||||+|||||+++
T Consensus 78 tk~~-----------~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~ 146 (292)
T PRK14863 78 TVRA-----------DRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAKIGVSAHAS 146 (292)
T ss_pred cccc-----------cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceEeeeccCH
Confidence 9842 2368999999999999999999999999999763 233 57899999999999999999999999
Q ss_pred HHHHHHhhcCCceEEeeeccccccccc-cchHHHHHHhCCcEEEcccCcccccCCCCCCCCCCchhhhhcCCCCCchhhH
Q 019222 169 DTIRRAHAVHPITAVQMEYSLWTREIE-DDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAMHPRFSGENLE 247 (344)
Q Consensus 169 ~~l~~~~~~~~~~~~q~~~n~~~~~~~-~~l~~~~~~~gi~v~a~spl~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (344)
+++.++....+++++|++||+++++.+ .+++++|+++||++++|+||++|+|++... ..+. . +.
T Consensus 147 ~~~~~~~~~~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~~~~~--~~~~--------~-----~~ 211 (292)
T PRK14863 147 DDPVGVARRFKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLFLPPD--RVPA--------Q-----LK 211 (292)
T ss_pred HHHHHHHhcCCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCccccCCcc--cCcc--------c-----hh
Confidence 998888777889999999999998654 469999999999999999999999975310 1110 1 11
Q ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeccCCCCHHHHHHhHcccCCCCCHHHHHHHHhhC
Q 019222 248 KNKLLYTRLETLAAKYGCTTPQLALAWLLHQGDDIVPIPGTTKITNLDNNIGSLALKLKEEDLKEICKTI 317 (344)
Q Consensus 248 ~~~~~~~~l~~la~~~g~s~~q~al~w~l~~~~v~~~i~g~~~~~~l~~nl~a~~~~L~~e~~~~i~~~~ 317 (344)
.....+..+.++++++++|++|+||+|++++|.|+++|+|+++++|+++|+++.+.+++++.+++|..-.
T Consensus 212 ~~~~~~~~~~~~~~~~~~s~aqlalaw~l~~p~v~~~I~G~~~~~ql~~n~~a~~~~~~~~~~~~l~~~~ 281 (292)
T PRK14863 212 GASGRLSRVRRMIAEGRSDPLQAALGFALSRPEGSAVLVGVNSAAELSAVVAAASSPPPDLDWDDMAIDD 281 (292)
T ss_pred hhhHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHHHhcCCCccchhhccCCh
Confidence 1234456778888889999999999999999999999999999999999999999899998887775443
No 14
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=8.1e-55 Score=395.78 Aligned_cols=254 Identities=28% Similarity=0.406 Sum_probs=224.4
Q ss_pred ceecCCCCcccccceeccCcCCCCCCCCCCHHHHHHHHHHHHHcCCCEEeCccCcCCCChHHHHHHHHhccC--CCCcEE
Q 019222 11 RVKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQL--PRDKIQ 88 (344)
Q Consensus 11 ~~~lg~tg~~vs~lg~G~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lG~~l~~~--~R~~~~ 88 (344)
+.+| ++|++||+||||||++ +.+++.++|+.|++.||||||||+.||+ |+.+|++|++. +|++++
T Consensus 6 ~~~l-~~g~~v~~lglG~~~~--------~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~----E~~lG~al~~~~~~R~~~~ 72 (275)
T PRK11565 6 VIKL-QDGNVMPQLGLGVWQA--------SNEEVITAIHKALEVGYRSIDTAAIYKN----EEGVGKALKEASVAREELF 72 (275)
T ss_pred eEEc-CCCCccCCcceECccC--------CHHHHHHHHHHHHHhCCCEEEchhhhCC----HHHHHHHHHHcCCCHHHEE
Confidence 3557 8999999999999975 4578999999999999999999999997 99999999864 689999
Q ss_pred EEeccCcccCCCcccCCCCCHHHHHHHHHHHHhhcCCCcceEEEecCCCCCC-CHHHHHHHHHHHHHcCceeeEecCCCc
Q 019222 89 LATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSV-SIEDTMGELKKLVEEGKIKYIGLSEAS 167 (344)
Q Consensus 89 I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~-~~~e~~~~L~~l~~~G~ir~iGvS~~~ 167 (344)
|+||++.. +++.+++++++||++|++||||+|++|+|++.. +..++|++|++|+++|+||+||||||+
T Consensus 73 i~tK~~~~-----------~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~ 141 (275)
T PRK11565 73 ITTKLWND-----------DHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSIGVCNFQ 141 (275)
T ss_pred EEEEecCc-----------chHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCeeEEeeccCC
Confidence 99998532 568999999999999999999999999998753 478999999999999999999999999
Q ss_pred HHHHHHHhhcC--CceEEeeeccccccccccchHHHHHHhCCcEEEcccCcccccCCCCCCCCCCchhhhhcCCCCCchh
Q 019222 168 ADTIRRAHAVH--PITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAMHPRFSGEN 245 (344)
Q Consensus 168 ~~~l~~~~~~~--~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (344)
.+++++++... .++++|++|+++.+. .+++++|+++||++++|+||++|. .. .|.
T Consensus 142 ~~~l~~~~~~~~v~~~~~Q~~~~~~~~~--~~~~~~~~~~~i~~~a~spl~~G~---~~---------------~~~--- 198 (275)
T PRK11565 142 IHHLQRLIDETGVTPVINQIELHPLMQQ--RQLHAWNATHKIQTESWSPLAQGG---KG---------------VFD--- 198 (275)
T ss_pred HHHHHHHHHhCCCCceeeeeecCCccch--HHHHHHHHHCCCEEEEEccCCCCC---cc---------------ccc---
Confidence 99999887543 468999999999874 579999999999999999999762 00 010
Q ss_pred hHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeccCCCCHHHHHHhHcccCCCCCHHHHHHHHhhCCCC
Q 019222 246 LEKNKLLYTRLETLAAKYGCTTPQLALAWLLHQGDDIVPIPGTTKITNLDNNIGSLALKLKEEDLKEICKTIPVD 320 (344)
Q Consensus 246 ~~~~~~~~~~l~~la~~~g~s~~q~al~w~l~~~~v~~~i~g~~~~~~l~~nl~a~~~~L~~e~~~~i~~~~~~~ 320 (344)
.+.|.++|+++|+|++|+||+|+++++ .+||+|+++++|+++|+++++++|+++++++|+++....
T Consensus 199 -------~~~l~~ia~~~g~s~aq~aL~w~l~~~--~~~I~g~~~~~~i~~n~~a~~~~Ls~~~~~~i~~~~~~~ 264 (275)
T PRK11565 199 -------QKVIRDLADKYGKTPAQIVIRWHLDSG--LVVIPKSVTPSRIAENFDVFDFRLDKDELGEIAKLDQGK 264 (275)
T ss_pred -------CHHHHHHHHHhCCCHHHHHHHHHHcCC--CEeeCCCCCHHHHHHHHhccCCCcCHHHHHHHHhhcccC
Confidence 147899999999999999999999997 569999999999999999999999999999999997643
No 15
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=7.3e-55 Score=370.48 Aligned_cols=286 Identities=29% Similarity=0.432 Sum_probs=254.3
Q ss_pred CCceecCCCCcccccceeccCcCCCCCCCCCCHHHHHHHHHHHHHcCCCEEeCccCcCCCChHHHHHHHHhccC--CCCc
Q 019222 9 VPRVKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQL--PRDK 86 (344)
Q Consensus 9 m~~~~lg~tg~~vs~lg~G~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lG~~l~~~--~R~~ 86 (344)
|++.+|++.|+++|+|.+|+|++. .|+ ++.++....++.|++.|||+||-|+.||+ +++|+++|.+|+-. .|++
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~-d~~--~~~~e~~~~Ie~~le~Gitt~DhADIYGg-y~cE~~fg~aL~l~p~lRek 76 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLN-DWN--MSARELLSFIETALELGITTFDHADIYGG-YQCEALFGEALKLAPGLREK 76 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhh-hcc--CCHHHHHHHHHHHHHcCcccchhhhhcCC-ccHHHHHHHHHhcChhhhhh
Confidence 788999999999999999999985 344 36689999999999999999999999998 99999999999865 9999
Q ss_pred EEEEeccCcccCCCc---ccCCCCCHHHHHHHHHHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCceeeEec
Q 019222 87 IQLATKFGCFMLDGV---SIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGL 163 (344)
Q Consensus 87 ~~I~tK~~~~~~~~~---~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir~iGv 163 (344)
+.|.||+|...+... ...+++|.++|..++|+||++|+|||+|+++||+||+..+.+|+.+|+..|+++||||++||
T Consensus 77 ieivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd~eeVAeAf~~L~~sGKVr~fGV 156 (298)
T COG4989 77 IEIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMDAEEVAEAFTHLHKSGKVRHFGV 156 (298)
T ss_pred eEeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCCHHHHHHHHHHHHhcCCeeeeec
Confidence 999999997654322 12468999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHhhc--CCceEEeeeccccccc-cccchHHHHHHhCCcEEEcccCcccccCCCCCCCCCCchhhhhcCCC
Q 019222 164 SEASADTIRRAHAV--HPITAVQMEYSLWTRE-IEDDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAMHPR 240 (344)
Q Consensus 164 S~~~~~~l~~~~~~--~~~~~~q~~~n~~~~~-~~~~l~~~~~~~gi~v~a~spl~~G~l~~~~~~~~~~~~~~~~~~~~ 240 (344)
|||++.+++-+.+. .++++||++.|+++.. ...+.+++|+++.|..+|||||++|.+....
T Consensus 157 SNf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~g~---------------- 220 (298)
T COG4989 157 SNFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLGD---------------- 220 (298)
T ss_pred CCCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCccccCC----------------
Confidence 99999998877665 3578999999999875 3478999999999999999999988544220
Q ss_pred CCchhhHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHhCCCCeEeccCCCCHHHHHHhHcccCCCCCHHHHHHHHhhCCC
Q 019222 241 FSGENLEKNKLLYTRLETLAAKYG-CTTPQLALAWLLHQGDDIVPIPGTTKITNLDNNIGSLALKLKEEDLKEICKTIPV 319 (344)
Q Consensus 241 ~~~~~~~~~~~~~~~l~~la~~~g-~s~~q~al~w~l~~~~v~~~i~g~~~~~~l~~nl~a~~~~L~~e~~~~i~~~~~~ 319 (344)
+..+....+|..||.++| .|..++|++|++.+|.-..||+|+.+++++++.++|+++.||.++|-+|..+..+
T Consensus 221 ------~~~q~l~~~l~~ia~e~ga~s~~~VaiAWllR~Pa~~~PiiGt~~~eRi~~a~~Al~~~LtRqqWf~Iy~Aa~G 294 (298)
T COG4989 221 ------DKFQRLRKVLDRIAEEYGAVSITAVAIAWLLRHPAKPQPIIGTGNLERIRAAIKALSLTLTRQQWFEIYTAAIG 294 (298)
T ss_pred ------cchHHHHHHHHHHHHHhCcccHHHHHHHHHHhCcCcccceecCCCHHHHHHHHHHhhccccHHHHHHHHHHhcc
Confidence 122445578999999999 7999999999999999999999999999999999999999999999999988755
Q ss_pred C
Q 019222 320 D 320 (344)
Q Consensus 320 ~ 320 (344)
.
T Consensus 295 ~ 295 (298)
T COG4989 295 N 295 (298)
T ss_pred C
Confidence 4
No 16
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=8.8e-51 Score=364.04 Aligned_cols=271 Identities=28% Similarity=0.386 Sum_probs=241.7
Q ss_pred CCceecCCCCcccccceeccCcCCCCCCCCCCHHHHHHHHHHHHHcCCCEEeCccCcCCCChHHHHHHHHhccCCCCcEE
Q 019222 9 VPRVKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQ 88 (344)
Q Consensus 9 m~~~~lg~tg~~vs~lg~G~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lG~~l~~~~R~~~~ 88 (344)
|.||++|+||.++|.||||||++...+....+.+.+.++|++|+++|||+||||..|.. |.||..+|++|++..|++|+
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~-g~sE~~lgkaL~~~~Rekv~ 79 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHG-GESEEFLGKALKDGYREKVK 79 (391)
T ss_pred CchhhcCCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccC-CCchHHHHHHhhhcccceEE
Confidence 78999999999999999999999765655568899999999999999999999999965 67999999999999999999
Q ss_pred EEeccCcccCCCcccCCCCCHHHHHHHHHHHHhhcCCCcceEEEecCCCCCCCHH-----HHHHHHHHHHHcCceeeEec
Q 019222 89 LATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIE-----DTMGELKKLVEEGKIKYIGL 163 (344)
Q Consensus 89 I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~-----e~~~~L~~l~~~G~ir~iGv 163 (344)
++||+.... .-+++.+++-++++|++|++||+|+|+||..+.+ .++ .+++.+++++++|+||++|+
T Consensus 80 LaTKlp~~~--------~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~e-~~~k~~~~g~~df~~kak~eGkIr~~GF 150 (391)
T COG1453 80 LATKLPSWP--------VKDREDMERIFNEQLEKLGTDYIDYYLIHGLNTE-TWEKIERLGVFDFLEKAKAEGKIRNAGF 150 (391)
T ss_pred EEeecCCcc--------ccCHHHHHHHHHHHHHHhCCchhhhhhhccccHH-HHHHHHccChHHHHHHHHhcCcEEEeee
Confidence 999998643 2388999999999999999999999999998773 332 36999999999999999999
Q ss_pred CCC-cHHHHHHHhhcCCceEEeeeccccccccc--cchHHHHHHhCCcEEEcccCcccccCCCCCCCCCCchhhhhcCCC
Q 019222 164 SEA-SADTIRRAHAVHPITAVQMEYSLWTREIE--DDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAMHPR 240 (344)
Q Consensus 164 S~~-~~~~l~~~~~~~~~~~~q~~~n~~~~~~~--~~l~~~~~~~gi~v~a~spl~~G~l~~~~~~~~~~~~~~~~~~~~ 240 (344)
|.| +.+.+.+++...+++++|++||.+++... .+.+++|.++|++|+.++|+.+|-|..+ .|
T Consensus 151 SfHgs~e~~~~iv~a~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~~-----vP---------- 215 (391)
T COG1453 151 SFHGSTEVFKEIVDAYPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYN-----VP---------- 215 (391)
T ss_pred cCCCCHHHHHHHHhcCCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcccC-----CC----------
Confidence 999 67889999999999999999999998644 3789999999999999999999977643 11
Q ss_pred CCchhhHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHhCCCCeEeccCCCCHHHHHHhHcccCC--C-CCHHHHHHHHh
Q 019222 241 FSGENLEKNKLLYTRLETLAAKYG--CTTPQLALAWLLHQGDDIVPIPGTTKITNLDNNIGSLAL--K-LKEEDLKEICK 315 (344)
Q Consensus 241 ~~~~~~~~~~~~~~~l~~la~~~g--~s~~q~al~w~l~~~~v~~~i~g~~~~~~l~~nl~a~~~--~-L~~e~~~~i~~ 315 (344)
+++.+|+++++ .||+.+|+||++++|.|.++++|+++++|++||++..+. | ||++|.+.|.+
T Consensus 216 -------------~~~~~l~~~~~~~~sP~~wa~R~~~shp~V~~vlsGm~~~~~l~enLk~~~~~~p~lte~e~~il~~ 282 (391)
T COG1453 216 -------------EKLEELCRPASPKRSPAEWALRYLLSHPEVTTVLSGMNTPEQLEENLKIASELEPSLTEEELQILEK 282 (391)
T ss_pred -------------HHHHHHHHhcCCCCCcHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHHHhhcCCccCHHHHHHHHH
Confidence 47888888875 589999999999999999999999999999999998873 3 99999988887
Q ss_pred hC
Q 019222 316 TI 317 (344)
Q Consensus 316 ~~ 317 (344)
+.
T Consensus 283 v~ 284 (391)
T COG1453 283 VE 284 (391)
T ss_pred HH
Confidence 65
No 17
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=1.2e-49 Score=341.08 Aligned_cols=282 Identities=26% Similarity=0.394 Sum_probs=241.1
Q ss_pred CCCceecCCCCcccccceeccCcCCCCCCCCCCHHHHHHHHHHHHHcCCCEEeCccCcCCCChHHHHHHHHhccCCCCcE
Q 019222 8 HVPRVKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKI 87 (344)
Q Consensus 8 ~m~~~~lg~tg~~vs~lg~G~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lG~~l~~~~R~~~ 87 (344)
.|.||.||+||++||+||||...++..|+. .+.++....+..|+++|||+|||++.||. ++||..+|.++++.+|+.+
T Consensus 21 rmeyR~lg~tgl~VSk~~fGga~L~~~fgd-~~~e~~i~tv~eA~k~GINyiDTsp~Ygq-s~se~~lg~al~~vPR~aY 98 (342)
T KOG1576|consen 21 RMEYRQLGSTGLRVSKLGFGGAALGQLFGD-EDEEEGILTVIEAFKSGINYIDTSPYYGQ-SRSEEGLGLALKDVPREAY 98 (342)
T ss_pred HHHHhhcCCCcceeeeeeecchhhhhhcCC-cchhhhHHHHHHHHHccccceecCcccCc-chhHHHHHHHHhhCChhhe
Confidence 588999999999999999999999988886 37778877777799999999999999998 9999999999999999999
Q ss_pred EEEeccCcccCCCcccCCCCCHHHHHHHHHHHHhhcCCCcceEEEecCCCCC----CCHHHHHHHHHHHHHcCceeeEec
Q 019222 88 QLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS----VSIEDTMGELKKLVEEGKIKYIGL 163 (344)
Q Consensus 88 ~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~----~~~~e~~~~L~~l~~~G~ir~iGv 163 (344)
||+||++...- +.....+++++.+++++++||+||++||+|++++|..+-. ..+.|++.+|+++|++||||+|||
T Consensus 99 yIaTKvgRy~l-d~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~lk~~Gk~RfiGi 177 (342)
T KOG1576|consen 99 YIATKVGRYEL-DYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEELKQEGKIRFIGI 177 (342)
T ss_pred eeeeeeeeccc-CccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHHHHHHhcCceeEeee
Confidence 99999985432 2233468999999999999999999999999999987543 456799999999999999999999
Q ss_pred CCCcHHHHHHHhhcC--CceEEe--eeccccccccccchHHHHHHhCCcEEEcccCcccccCCCCCCCCCCchhhhhcCC
Q 019222 164 SEASADTIRRAHAVH--PITAVQ--MEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAMHP 239 (344)
Q Consensus 164 S~~~~~~l~~~~~~~--~~~~~q--~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~l~~~~~~~~~~~~~~~~~~~ 239 (344)
+.++.+.+.+..+.. .++++- ..|++.+... ...+++.+..|++|+.-++++.|+|+...++...|.
T Consensus 178 tgypldvl~~~ae~~~G~~dvvlsY~ry~l~d~tL-l~~~~~~~sk~vgVi~AsalsmgLLt~~gp~~wHPa-------- 248 (342)
T KOG1576|consen 178 TGYPLDVLTECAERGKGRLDVVLSYCRYTLNDNTL-LRYLKRLKSKGVGVINASALSMGLLTNQGPPPWHPA-------- 248 (342)
T ss_pred cccchHHHHHHHhcCCCceeeehhhhhhccccHHH-HHHHHHHHhcCceEEehhhHHHHHhhcCCCCCCCCC--------
Confidence 999999999988764 356665 5666655432 456788889999999999999999997633323222
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeccCCCCHHHHHHhHcccCCCCCH
Q 019222 240 RFSGENLEKNKLLYTRLETLAAKYGCTTPQLALAWLLHQGDDIVPIPGTTKITNLDNNIGSLALKLKE 307 (344)
Q Consensus 240 ~~~~~~~~~~~~~~~~l~~la~~~g~s~~q~al~w~l~~~~v~~~i~g~~~~~~l~~nl~a~~~~L~~ 307 (344)
.++..+...+-.++|++.|+.+..+|+.|.++.++++++++|+++.++++.|+++..-.||.
T Consensus 249 ------S~Elk~~a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~s~~~l~~nLdan~~~ls~ 310 (342)
T KOG1576|consen 249 ------SDELKEAAKAAAEYCQSRNVELGKLAMYYAMSLPGVSTVLVGMSSRQLLRINLDANFDRLSS 310 (342)
T ss_pred ------CHHHHHHHHHHHHHHHHcCccHHHHHHHHHHccCCcceEEecCchHHHHHHHHHhhhccccc
Confidence 24455666778889999999999999999999999999999999999999999976667776
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=97.97 E-value=1.7e-05 Score=68.42 Aligned_cols=72 Identities=21% Similarity=0.238 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHcCceeeEecCCCcHHHHHHHhhcC--CceEEeeeccccccccccchHHHHHHhCCcEEEccc
Q 019222 142 IEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVH--PITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSP 214 (344)
Q Consensus 142 ~~e~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~--~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~sp 214 (344)
+.++|+.||+++.+|+|..||||.|+..+|+++++.. .|..+|+...-.+.-+ .++..||.+|+|.+..++-
T Consensus 155 lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvP-pdLqafa~~hdiQLltHsD 228 (285)
T KOG3023|consen 155 LKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVP-PDLQAFADRHDIQLLTHSD 228 (285)
T ss_pred HHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccCC-HHHHHHhhhcceeeeecCC
Confidence 3468999999999999999999999999999999874 5678888877766644 5899999999999988653
No 19
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=93.81 E-value=2.4 Score=39.22 Aligned_cols=155 Identities=15% Similarity=0.089 Sum_probs=96.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCccCcCCCC-hHHHHHHHHhccCCCCcEEEEeccCcccCCCcccCCCCCHHHHHHHHHH
Q 019222 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDH-DNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEA 118 (344)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g-~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 118 (344)
+.++..+.++.+++.|++.|+.-- |.+. ...+.+- ++++.-. ++-|.-+....+ +.+.. ..+-+
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~--g~~~~~d~~~v~-~lr~~~g-~~~l~vD~n~~~----------~~~~A-~~~~~ 198 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKL--GGDLEDDIERIR-AIREAAP-DARLRVDANQGW----------TPEEA-VELLR 198 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEe--CCChhhHHHHHH-HHHHhCC-CCeEEEeCCCCc----------CHHHH-HHHHH
Confidence 556777888888999999998642 3201 1123333 3333222 566777664332 44332 22333
Q ss_pred HHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCcee-eEecCCCcHHHHHHHhhcCCceEEeeecccccc-cccc
Q 019222 119 SLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTR-EIED 196 (344)
Q Consensus 119 sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~ 196 (344)
.|+.+ ++.++-.|-+.. -++.+.+|++...|. +.|=+-++.+.+.++++....+++|+..+.+-. ....
T Consensus 199 ~l~~~-----~l~~iEeP~~~~----d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~~~~ 269 (316)
T cd03319 199 ELAEL-----GVELIEQPVPAG----DDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYDGINIKLMKTGGLTEAL 269 (316)
T ss_pred HHHhc-----CCCEEECCCCCC----CHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEeccccCCHHHHH
Confidence 44554 444555554332 366677888877666 445566788999999998889999998766422 1125
Q ss_pred chHHHHHHhCCcEEEcccCccc
Q 019222 197 DIIPLCRELGIGIVAYSPLGRG 218 (344)
Q Consensus 197 ~l~~~~~~~gi~v~a~spl~~G 218 (344)
.+..+|+++|+.++..+-+..|
T Consensus 270 ~~~~~a~~~gi~~~~~~~~~~~ 291 (316)
T cd03319 270 RIADLARAAGLKVMVGCMVESS 291 (316)
T ss_pred HHHHHHHHcCCCEEEECchhhH
Confidence 7899999999999987655433
No 20
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=87.72 E-value=11 Score=35.36 Aligned_cols=154 Identities=12% Similarity=0.073 Sum_probs=92.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCcc--CcCCC---ChHHHHHHHHhccCCCCcEEEEeccCcccCCCcccCCCCCHHHHHH
Q 019222 40 SHEVGCSIIKETFNRGITLFDTSD--VYGVD---HDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRK 114 (344)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~--~Yg~~---g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~ 114 (344)
+.++..+.++.+.+.|++.|-.-- .|... ....+.+ +++++.-.+++.|....... ++.+...
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v-~~ir~~~g~~~~l~vDaN~~----------~~~~~a~- 206 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARV-RAVREAVGPDVDLMVDANGR----------WDLAEAI- 206 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHH-HHHHHhhCCCCEEEEECCCC----------CCHHHHH-
Confidence 356677788888899999987432 22100 0012222 33343223455555554322 2444333
Q ss_pred HHHHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCcee-eEecCCCcHHHHHHHhhcCCceEEeeecccccc-
Q 019222 115 CCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTR- 192 (344)
Q Consensus 115 ~~~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~- 192 (344)
+.+++|. ..++.+++.|-+.. .++.+.+|++.-.+. ..|=|.++.+.+.++++....+++|+.....-.
T Consensus 207 ---~~~~~l~--~~~i~~iEqP~~~~----~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi 277 (357)
T cd03316 207 ---RLARALE--EYDLFWFEEPVPPD----DLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKVGGI 277 (357)
T ss_pred ---HHHHHhC--ccCCCeEcCCCCcc----CHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCCCEEecCccccCCH
Confidence 3334442 23556677775432 466677788775555 444556789999999988888999988766432
Q ss_pred ccccchHHHHHHhCCcEEEccc
Q 019222 193 EIEDDIIPLCRELGIGIVAYSP 214 (344)
Q Consensus 193 ~~~~~l~~~~~~~gi~v~a~sp 214 (344)
.....+..+|+++|+.++..+-
T Consensus 278 ~~~~~i~~~a~~~g~~~~~~~~ 299 (357)
T cd03316 278 TEAKKIAALAEAHGVRVAPHGA 299 (357)
T ss_pred HHHHHHHHHHHHcCCeEeccCC
Confidence 1125789999999999877653
No 21
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=87.58 E-value=21 Score=32.06 Aligned_cols=157 Identities=15% Similarity=0.165 Sum_probs=94.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCccCcCCCChHHHHHHHHhccCCCCcEEEEeccCcccCCCcccCCCCCHHHHHHHHHHH
Q 019222 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEAS 119 (344)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 119 (344)
+.++..+.++.+++.|++.|-.-- |.+...+...=+++++.-.+++.|...... .++.+...+-+ +.
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKv--g~~~~~d~~~v~~vr~~~g~~~~l~vDan~----------~~~~~~a~~~~-~~ 151 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKV--GRDPARDVAVVAALREAVGDDAELRVDANR----------GWTPKQAIRAL-RA 151 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEec--CCCHHHHHHHHHHHHHhcCCCCEEEEeCCC----------CcCHHHHHHHH-HH
Confidence 456677778888999999987532 220111112223344322334545444322 22444333332 33
Q ss_pred HhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCcee-eEecCCCcHHHHHHHhhcCCceEEeeecccccc-ccccc
Q 019222 120 LKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTR-EIEDD 197 (344)
Q Consensus 120 L~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~ 197 (344)
|+.+ ++.++..|-+.. -++.+.++++.-.+. +.|=+.++...+.++++...++++|+..+..-. .....
T Consensus 152 l~~~-----~i~~iEeP~~~~----d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~ 222 (265)
T cd03315 152 LEDL-----GLDYVEQPLPAD----DLEGRAALARATDTPIMADESAFTPHDAFRELALGAADAVNIKTAKTGGLTKAQR 222 (265)
T ss_pred HHhc-----CCCEEECCCCcc----cHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCEEEEecccccCHHHHHH
Confidence 3444 445566664432 356677777776555 445566788899998888889999998776543 11257
Q ss_pred hHHHHHHhCCcEEEcccCccc
Q 019222 198 IIPLCRELGIGIVAYSPLGRG 218 (344)
Q Consensus 198 l~~~~~~~gi~v~a~spl~~G 218 (344)
+..+|+++|+.++..+.+..|
T Consensus 223 ~~~~A~~~gi~~~~~~~~~s~ 243 (265)
T cd03315 223 VLAVAEALGLPVMVGSMIESG 243 (265)
T ss_pred HHHHHHHcCCcEEecCccchH
Confidence 899999999999987666544
No 22
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=83.10 E-value=23 Score=31.86 Aligned_cols=101 Identities=20% Similarity=0.165 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHHHHhhcCCCcceEEEe-cCCCCC-CCHH----HHHHHHHHHHHcCceeeEecCCCcHHHHHHHhhcCCc
Q 019222 107 GSPEYVRKCCEASLKRLDVDYIDLYYQ-HRVDTS-VSIE----DTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPI 180 (344)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~d~iDl~~l-H~~~~~-~~~~----e~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~ 180 (344)
++.+.+.+..++.+ +-|-|+||+-.- -+|... .+.+ .+...++.+++.-.+- +.|-+++++.++++++....
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~G~~ 98 (257)
T cd00739 21 LSLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVL-ISVDTFRAEVARAALEAGAD 98 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHhCCC
Confidence 46666666655554 558899998532 234332 2223 3344456666653443 88889999999999987532
Q ss_pred eEEeeeccccccccccchHHHHHHhCCcEEEcc
Q 019222 181 TAVQMEYSLWTREIEDDIIPLCRELGIGIVAYS 213 (344)
Q Consensus 181 ~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~s 213 (344)
+-+..+....+ .++++.++++|..++.+.
T Consensus 99 --iINdisg~~~~--~~~~~l~~~~~~~vV~m~ 127 (257)
T cd00739 99 --IINDVSGGSDD--PAMLEVAAEYGAPLVLMH 127 (257)
T ss_pred --EEEeCCCCCCC--hHHHHHHHHcCCCEEEEC
Confidence 23333443321 468999999999999954
No 23
>PRK08392 hypothetical protein; Provisional
Probab=82.23 E-value=15 Score=31.98 Aligned_cols=154 Identities=16% Similarity=0.116 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHcCCCEEeCccCcCC--CChHHHHHHHHhccCCCCcEEEEeccCcccCCCcccCCCCCHHHHHHHHHHHH
Q 019222 43 VGCSIIKETFNRGITLFDTSDVYGV--DHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASL 120 (344)
Q Consensus 43 ~~~~~l~~A~~~Gi~~~DtA~~Yg~--~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL 120 (344)
...++++.|.+.|++.|=.+++.-. +..-+..+-+.-+-..+.++- -..|.... ..++. ....++.+
T Consensus 15 ~~~e~v~~A~~~Gl~~i~iTdH~~~~~~~~~~~y~~~i~~l~~~~~i~--il~GiE~~--------~~~~~-~~~~~~~~ 83 (215)
T PRK08392 15 SVRDNIAEAERKGLRLVGISDHIHYFTPSKFNAYINEIRQWGEESEIV--VLAGIEAN--------ITPNG-VDITDDFA 83 (215)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCCccchhhHHHHHHHHHHHhhccCce--EEEeEEee--------ecCCc-chhHHHHH
Confidence 3678899999999999976666421 000112222211100112222 22222110 01111 12333444
Q ss_pred hhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCceeeEecCC-------C-cHHHHHHHhhcCCceEEeeecccccc
Q 019222 121 KRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSE-------A-SADTIRRAHAVHPITAVQMEYSLWTR 192 (344)
Q Consensus 121 ~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir~iGvS~-------~-~~~~l~~~~~~~~~~~~q~~~n~~~~ 192 (344)
++ .||+ +.-+|........++.++.+.++.+.|.+.-+|=-. . ..+.++++++...-.-..++.|-..+
T Consensus 84 ~~--~D~v-I~SvH~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g~~lEiNt~~~ 160 (215)
T PRK08392 84 KK--LDYV-IASVHEWFGRPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYGKAFEISSRYR 160 (215)
T ss_pred hh--CCEE-EEEeecCcCCcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhCCEEEEeCCCC
Confidence 53 4666 667894433333567788888888999876665421 1 11233333222100011222232222
Q ss_pred ccccchHHHHHHhCCcEE
Q 019222 193 EIEDDIIPLCRELGIGIV 210 (344)
Q Consensus 193 ~~~~~l~~~~~~~gi~v~ 210 (344)
.+...+++.|++.|+.++
T Consensus 161 ~p~~~~l~~~~~~G~~~~ 178 (215)
T PRK08392 161 VPDLEFIRECIKRGIKLT 178 (215)
T ss_pred CCCHHHHHHHHHcCCEEE
Confidence 334578999999997653
No 24
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=81.87 E-value=28 Score=31.34 Aligned_cols=136 Identities=15% Similarity=0.180 Sum_probs=78.4
Q ss_pred CHHHHHHHHHHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCceeeEecCCCcHHHHHHHhhcCCceEEeeec
Q 019222 108 SPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQMEY 187 (344)
Q Consensus 108 ~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~ 187 (344)
+.+.+.+..++.. .-|-|+||+-.= +......+.+...++.+++.-.+ -|.|-+++++.++.+++..+=..+-+..
T Consensus 23 d~~~i~~~A~~~~-~~GAdiIDVg~~--~~~~eE~~r~~~~v~~l~~~~~~-plsIDT~~~~v~eaaL~~~~G~~iINsI 98 (261)
T PRK07535 23 DAAFIQKLALKQA-EAGADYLDVNAG--TAVEEEPETMEWLVETVQEVVDV-PLCIDSPNPAAIEAGLKVAKGPPLINSV 98 (261)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCC--CCchhHHHHHHHHHHHHHHhCCC-CEEEeCCCHHHHHHHHHhCCCCCEEEeC
Confidence 4555555555543 668999998532 11222234455566666554232 3788899999999998862211223333
Q ss_pred cccccccccchHHHHHHhCCcEEEcccCcccccCCCCCCCCCCchhhhhcCCCCCchhhHHHHHHHHHHHHHHHHhCCCH
Q 019222 188 SLWTREIEDDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAMHPRFSGENLEKNKLLYTRLETLAAKYGCTT 267 (344)
Q Consensus 188 n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~s~ 267 (344)
+..... ...+++.++++|+.++...--..|. |. ..+.....++.+.+.+.++|+++
T Consensus 99 s~~~~~-~~~~~~l~~~~g~~vv~m~~~~~g~----------P~-------------t~~~~~~~l~~~v~~a~~~GI~~ 154 (261)
T PRK07535 99 SAEGEK-LEVVLPLVKKYNAPVVALTMDDTGI----------PK-------------DAEDRLAVAKELVEKADEYGIPP 154 (261)
T ss_pred CCCCcc-CHHHHHHHHHhCCCEEEEecCCCCC----------CC-------------CHHHHHHHHHHHHHHHHHcCCCH
Confidence 332211 2468999999999998754322231 10 11223445566667777888876
Q ss_pred HHHH
Q 019222 268 PQLA 271 (344)
Q Consensus 268 ~q~a 271 (344)
.++.
T Consensus 155 ~~Ii 158 (261)
T PRK07535 155 EDIY 158 (261)
T ss_pred hHEE
Confidence 6643
No 25
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=81.36 E-value=40 Score=30.21 Aligned_cols=103 Identities=19% Similarity=0.159 Sum_probs=65.8
Q ss_pred CCHHHHHHHHHHHHhhcCCCcceEEE-ecCCCCC-CC----HHHHHHHHHHHHHcCceeeEecCCCcHHHHHHHhhcCCc
Q 019222 107 GSPEYVRKCCEASLKRLDVDYIDLYY-QHRVDTS-VS----IEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPI 180 (344)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~d~iDl~~-lH~~~~~-~~----~~e~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~ 180 (344)
.+.+.+.+..++.+ .-|-|.||+-. --+|+.. .+ .+.+...++.+++.-.+ -|.|.+++++.++.+++....
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~-piSIDT~~~~v~~aaL~~g~~ 98 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDV-PISVDTFNAEVAEAALKAGAD 98 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCcHHHHHHHHHhCCC
Confidence 36666666666654 56889999853 2334321 11 23455666677665333 388999999999999987632
Q ss_pred eEEeeeccccccccccchHHHHHHhCCcEEEcccC
Q 019222 181 TAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPL 215 (344)
Q Consensus 181 ~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl 215 (344)
+-+..+....+ .++++.++++|..++.+..-
T Consensus 99 --iINdis~~~~~--~~~~~l~~~~~~~vV~m~~~ 129 (258)
T cd00423 99 --IINDVSGGRGD--PEMAPLAAEYGAPVVLMHMD 129 (258)
T ss_pred --EEEeCCCCCCC--hHHHHHHHHcCCCEEEECcC
Confidence 33333433221 46899999999999887543
No 26
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=80.51 E-value=11 Score=33.70 Aligned_cols=106 Identities=21% Similarity=0.181 Sum_probs=67.9
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcC-ceeeEecCCCcHHHHHHHhhcCCceEEe
Q 019222 106 KGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG-KIKYIGLSEASADTIRRAHAVHPITAVQ 184 (344)
Q Consensus 106 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G-~ir~iGvS~~~~~~l~~~~~~~~~~~~q 184 (344)
.++.+...+-++. |..+|+++|.+-..-.+......++.++.++.+++.+ .++...++....+.++.+.+. .++.++
T Consensus 15 ~~s~e~~~~i~~~-L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~-g~~~i~ 92 (265)
T cd03174 15 TFSTEDKLEIAEA-LDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEA-GVDEVR 92 (265)
T ss_pred CCCHHHHHHHHHH-HHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhC-CcCEEE
Confidence 4566666655555 7788999999866544322112245688888899888 677767776556666666654 356666
Q ss_pred eeccccc--------c------ccccchHHHHHHhCCcEEEcc
Q 019222 185 MEYSLWT--------R------EIEDDIIPLCRELGIGIVAYS 213 (344)
Q Consensus 185 ~~~n~~~--------~------~~~~~l~~~~~~~gi~v~a~s 213 (344)
+.+..-+ + +.-...+++++++|+.+...-
T Consensus 93 i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 93 IFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 6555431 1 111467888999998876543
No 27
>PRK07945 hypothetical protein; Provisional
Probab=79.83 E-value=22 Score=33.36 Aligned_cols=152 Identities=14% Similarity=0.041 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHcCCCEEeCccCcCC----CChHHHHHHHHhcc------CCCCcEEEEeccCcccCCCcccCCCCCHHH
Q 019222 42 EVGCSIIKETFNRGITLFDTSDVYGV----DHDNEIMVGKALKQ------LPRDKIQLATKFGCFMLDGVSIGVKGSPEY 111 (344)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~----~g~sE~~lG~~l~~------~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~ 111 (344)
....++++.|.+.|+..+=.++|.-. .+.+...+-+.+.. .-++ |.-+.|....- ..+.+.+.
T Consensus 111 ~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~ky~~---I~Il~GiE~d~----~~~g~~~~ 183 (335)
T PRK07945 111 SPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEELAP---FRILTGIEVDI----LDDGSLDQ 183 (335)
T ss_pred CCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHhcCC---ceEEEEeEecc----cCCCCcch
Confidence 34678999999999998877766321 01122222222221 1122 22233322100 00112222
Q ss_pred HHHHHHHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCceeeEecCC---------------CcHHHHHHHhh
Q 019222 112 VRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSE---------------ASADTIRRAHA 176 (344)
Q Consensus 112 i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir~iGvS~---------------~~~~~l~~~~~ 176 (344)
. ++.|+. .||+ +.-+|+... .+.++..+.|.++.+.+.+..+|=-. +..+.+.+++.
T Consensus 184 ~----~~~l~~--~D~v-IgSvH~~~~-~~~~~~~~~l~~ai~~~~~dvlgH~D~~~~~~~~~~~~~~~~~~~~i~~a~~ 255 (335)
T PRK07945 184 E----PELLDR--LDVV-VASVHSKLR-MDAAAMTRRMLAAVANPHTDVLGHCTGRLVTGNRGTRPESKFDAEAVFAACR 255 (335)
T ss_pred h----HHHHHh--CCEE-EEEeecCCC-CCHHHHHHHHHHHhcCCCCeEEecCchhhhccccCCCChhhcCHHHHHHHHH
Confidence 2 333443 4676 678898643 34566778888888888888777321 11122222222
Q ss_pred cCCceEEeeeccccccccccchHHHHHHhCCcE
Q 019222 177 VHPITAVQMEYSLWTREIEDDIIPLCRELGIGI 209 (344)
Q Consensus 177 ~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v 209 (344)
.... .+.+.-+.+...+...+++.|++.|+.+
T Consensus 256 e~g~-~lEINt~~~r~~P~~~il~~a~e~G~~v 287 (335)
T PRK07945 256 EHGT-AVEINSRPERRDPPTRLLRLALDAGCLF 287 (335)
T ss_pred HhCC-EEEEeCCCCCCCChHHHHHHHHHcCCeE
Confidence 2221 1222222222334456888888888875
No 28
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=79.33 E-value=5.9 Score=34.39 Aligned_cols=68 Identities=16% Similarity=0.222 Sum_probs=46.8
Q ss_pred HHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCceeeEecC-CCcHHHHHHHhhcCCceEEeeecc
Q 019222 119 SLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLS-EASADTIRRAHAVHPITAVQMEYS 188 (344)
Q Consensus 119 sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~n 188 (344)
.+..+|.||+=+.+........+.+.+ +.+.+.. .+.++.+||. |.+++.+.++++..+++++|++-+
T Consensus 16 ~~~~~GaD~iGfIf~~~SpR~V~~~~a-~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~~~~~d~vQLHG~ 84 (207)
T PRK13958 16 AASQLPIDAIGFIHYEKSKRHQTITQI-KKLASAV-PNHIDKVCVVVNPDLTTIEHILSNTSINTIQLHGT 84 (207)
T ss_pred HHHHcCCCEEEEecCCCCcccCCHHHH-HHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhCCCCEEEECCC
Confidence 345699999998754433333444433 3333332 2567889996 678999999999999999999754
No 29
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=79.26 E-value=61 Score=31.09 Aligned_cols=149 Identities=15% Similarity=0.102 Sum_probs=91.0
Q ss_pred CHHHHHHHHHHHHH-cCCCEEeCccCcCCC-ChH-HHHHHHHhccCCCCcEEEEeccCcccCCCcccCCCCCHHHHHHHH
Q 019222 40 SHEVGCSIIKETFN-RGITLFDTSDVYGVD-HDN-EIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCC 116 (344)
Q Consensus 40 ~~~~~~~~l~~A~~-~Gi~~~DtA~~Yg~~-g~s-E~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~ 116 (344)
+.++..+.++.+++ .|++.|=.-- |.. ... .+.+ +++++.- .++.|..-... .++++. .
T Consensus 168 ~~e~~~~~a~~~~~~~Gf~~~KiKv--G~~~~~~di~~v-~avRea~-~~~~l~vDaN~----------~w~~~~----A 229 (395)
T cd03323 168 TPEGVVRLARAAIDRYGFKSFKLKG--GVLPGEEEIEAV-KALAEAF-PGARLRLDPNG----------AWSLET----A 229 (395)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEec--CCCCHHHHHHHH-HHHHHhC-CCCcEEEeCCC----------CcCHHH----H
Confidence 45666666777775 6999875321 210 011 1222 2333322 13434333322 224443 3
Q ss_pred HHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCcee-eEecCCCcHHHHHHHhhcCCceEEeeeccccccc-c
Q 019222 117 EASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-I 194 (344)
Q Consensus 117 ~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~ 194 (344)
.+.+++|. - ++.++-.|-+ -++.+.+|++...+- +.|-|.++.+++.++++..-++++|......--- .
T Consensus 230 ~~~~~~l~--~-~l~~iEeP~~------d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~avdil~~d~~~~GGit~ 300 (395)
T cd03323 230 IRLAKELE--G-VLAYLEDPCG------GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNAVDIPLADHHFWGGMRG 300 (395)
T ss_pred HHHHHhcC--c-CCCEEECCCC------CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCCCcEEeeccccccCHHH
Confidence 33445553 3 7777887754 367788888887665 6677777888999998888889998887654321 1
Q ss_pred ccchHHHHHHhCCcEEEcccC
Q 019222 195 EDDIIPLCRELGIGIVAYSPL 215 (344)
Q Consensus 195 ~~~l~~~~~~~gi~v~a~spl 215 (344)
..++..+|+.+|+.+..++..
T Consensus 301 ~~kia~~A~~~gi~~~~h~~~ 321 (395)
T cd03323 301 SVRVAQVCETWGLGWGMHSNN 321 (395)
T ss_pred HHHHHHHHHHcCCeEEEecCc
Confidence 257899999999999887764
No 30
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=78.04 E-value=14 Score=32.43 Aligned_cols=87 Identities=13% Similarity=0.075 Sum_probs=61.8
Q ss_pred ceEEEecCCCCCCCHHHHHHHHHHHHHcCcee-eEecCCCcHHHHHHHhhcCCceEEeeeccccccc-cccchHHHHHHh
Q 019222 128 IDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDDIIPLCREL 205 (344)
Q Consensus 128 iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~l~~~~~~~ 205 (344)
.++.++-.|-+..+ ++.+.+|++...+. +.+=|.++.+.+.+++....++++|+..+..-.- ...++..+|+++
T Consensus 120 ~~i~~iEeP~~~~d----~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~~d~~~~k~~~~GGi~~~~~i~~~a~~~ 195 (229)
T cd00308 120 YGLAWIEEPCAPDD----LEGYAALRRRTGIPIAADESVTTVDDALEALELGAVDILQIKPTRVGGLTESRRAADLAEAF 195 (229)
T ss_pred cCCCeEECCCCccC----HHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHc
Confidence 56777777755433 56677777777665 4455566788887888877889999887765321 125788999999
Q ss_pred CCcEEEcccCccc
Q 019222 206 GIGIVAYSPLGRG 218 (344)
Q Consensus 206 gi~v~a~spl~~G 218 (344)
|+.++..+.+..|
T Consensus 196 gi~~~~~~~~~s~ 208 (229)
T cd00308 196 GIRVMVHGTLESS 208 (229)
T ss_pred CCEEeecCCCCCH
Confidence 9999998776544
No 31
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=78.02 E-value=52 Score=31.02 Aligned_cols=15 Identities=7% Similarity=-0.079 Sum_probs=10.6
Q ss_pred HHHHHHHcCCCEEeC
Q 019222 47 IIKETFNRGITLFDT 61 (344)
Q Consensus 47 ~l~~A~~~Gi~~~Dt 61 (344)
..+.|.++|+..++-
T Consensus 142 aA~~a~~aGfDgVei 156 (353)
T cd02930 142 CAALAREAGYDGVEI 156 (353)
T ss_pred HHHHHHHcCCCEEEE
Confidence 334456789999886
No 32
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=77.03 E-value=14 Score=35.40 Aligned_cols=81 Identities=15% Similarity=0.130 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHcCCCEEeCccCcCCCChHHHHHHHHhccCCCCcEEEEeccCcccCCCcccCCCCCHHHHHHHHHHHHh
Q 019222 42 EVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLK 121 (344)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 121 (344)
.....++++|++.|++++|||.+.-. ...+.... .+..+.+..-+|..+ ..+--.....+++--.
T Consensus 79 ~~~~~i~ka~i~~gv~yvDts~~~~~----~~~~~~~a---~~Agit~v~~~G~dP--------Gi~nv~a~~a~~~~~~ 143 (389)
T COG1748 79 FVDLTILKACIKTGVDYVDTSYYEEP----PWKLDEEA---KKAGITAVLGCGFDP--------GITNVLAAYAAKELFD 143 (389)
T ss_pred hhhHHHHHHHHHhCCCEEEcccCCch----hhhhhHHH---HHcCeEEEcccCcCc--------chHHHHHHHHHHHhhc
Confidence 34568999999999999999976543 32233332 345566666666443 2232223333333332
Q ss_pred hcCCCcceEEEecCCCCC
Q 019222 122 RLDVDYIDLYYQHRVDTS 139 (344)
Q Consensus 122 ~L~~d~iDl~~lH~~~~~ 139 (344)
.+++||+|..+-|++.
T Consensus 144 --~i~si~iy~g~~g~~~ 159 (389)
T COG1748 144 --EIESIDIYVGGLGEHG 159 (389)
T ss_pred --cccEEEEEEecCCCCC
Confidence 5799999999988765
No 33
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=76.74 E-value=64 Score=29.91 Aligned_cols=134 Identities=10% Similarity=0.001 Sum_probs=80.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCc---c-----CcCCCC----hHHHHHHHHhccC---CCCcEEEEeccCcccCCCcccC
Q 019222 40 SHEVGCSIIKETFNRGITLFDTS---D-----VYGVDH----DNEIMVGKALKQL---PRDKIQLATKFGCFMLDGVSIG 104 (344)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA---~-----~Yg~~g----~sE~~lG~~l~~~---~R~~~~I~tK~~~~~~~~~~~~ 104 (344)
+.++..+..+.+.+.|+..||-- + .||. | .--+.+.+.++.. ...++-|+.|+...+.
T Consensus 73 ~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~-Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~------ 145 (312)
T PRK10550 73 YPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGG-GATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWD------ 145 (312)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCC-chHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCC------
Confidence 66777777788889999999922 2 2443 3 1223444444432 2224678888754321
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCcceEEEecCCCCCCCHH--H-HHHHHHHHHHcCceeeEecCCC-cHHHHHHHhhcCCc
Q 019222 105 VKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIE--D-TMGELKKLVEEGKIKYIGLSEA-SADTIRRAHAVHPI 180 (344)
Q Consensus 105 ~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~--e-~~~~L~~l~~~G~ir~iGvS~~-~~~~l~~~~~~~~~ 180 (344)
+.+. ...+-+.|+..|+ |.+.+|.-....... . -|+...++++.-.|--||.... ++++..++++....
T Consensus 146 ---~~~~-~~~~a~~l~~~Gv---d~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~ 218 (312)
T PRK10550 146 ---SGER-KFEIADAVQQAGA---TELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGC 218 (312)
T ss_pred ---CchH-HHHHHHHHHhcCC---CEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCC
Confidence 1122 2345555677765 666778643322111 1 3777888888777888887774 78888888877777
Q ss_pred eEEeeec
Q 019222 181 TAVQMEY 187 (344)
Q Consensus 181 ~~~q~~~ 187 (344)
+.+++-=
T Consensus 219 DgVmiGR 225 (312)
T PRK10550 219 DAVMIGR 225 (312)
T ss_pred CEEEEcH
Confidence 7777643
No 34
>PRK08609 hypothetical protein; Provisional
Probab=76.52 E-value=46 Score=33.70 Aligned_cols=149 Identities=13% Similarity=0.163 Sum_probs=80.4
Q ss_pred HHHHHHHHHHcCCCEEeCccCcCC----CChHHHHHHHHh------ccC-CCCcEEEEeccCcccCCCcccCCCCCHHHH
Q 019222 44 GCSIIKETFNRGITLFDTSDVYGV----DHDNEIMVGKAL------KQL-PRDKIQLATKFGCFMLDGVSIGVKGSPEYV 112 (344)
Q Consensus 44 ~~~~l~~A~~~Gi~~~DtA~~Yg~----~g~sE~~lG~~l------~~~-~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i 112 (344)
..++++.|.+.|+..|=.++|+.. .+.+...+-..+ ++. ..=+|++-.-+... ++..
T Consensus 351 leemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l~~~~~~i~Il~GiEv~i~------------~~g~ 418 (570)
T PRK08609 351 IEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKALNEKYPEIDILSGIEMDIL------------PDGS 418 (570)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeec------------CCcc
Confidence 556999999999999988888621 022333333322 221 11123333222221 1111
Q ss_pred HHHHHHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCceeeEecCC------Cc--HHHHHHHhh---cCCce
Q 019222 113 RKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSE------AS--ADTIRRAHA---VHPIT 181 (344)
Q Consensus 113 ~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir~iGvS~------~~--~~~l~~~~~---~~~~~ 181 (344)
..-.+..|+. .||+ +.-+|++.. .+.+++++.+.++.+.|.+.-||=-. .. ...++++++ ... .
T Consensus 419 ~d~~~~~L~~--~D~v-I~SvH~~~~-~~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G-~ 493 (570)
T PRK08609 419 LDYDDEVLAE--LDYV-IAAIHSSFS-QSEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETN-T 493 (570)
T ss_pred hhhcHHHHHh--hCEE-EEEeecCCC-CCHHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhC-C
Confidence 2223335554 4776 677897643 35677888999999998877665433 11 122222222 122 2
Q ss_pred EEeeeccccccccccchHHHHHHhCCcE
Q 019222 182 AVQMEYSLWTREIEDDIIPLCRELGIGI 209 (344)
Q Consensus 182 ~~q~~~n~~~~~~~~~l~~~~~~~gi~v 209 (344)
++|+.-+.+.......++..|.+.|+.+
T Consensus 494 ~lEINa~~~r~~~~~~~~~~~~e~Gv~i 521 (570)
T PRK08609 494 ALELNANPNRLDLSAEHLKKAQEAGVKL 521 (570)
T ss_pred EEEEcCCccccCccHHHHHHHHHcCCEE
Confidence 4555555443333456888888988864
No 35
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=75.39 E-value=39 Score=32.39 Aligned_cols=147 Identities=16% Similarity=0.169 Sum_probs=87.7
Q ss_pred CHHHHHHHHHHHHHcCCCE-EeCccCcCCCChHHHHHHHHh-ccCCCCcEEEEeccCcccC-----CCcccCCCCCHHHH
Q 019222 40 SHEVGCSIIKETFNRGITL-FDTSDVYGVDHDNEIMVGKAL-KQLPRDKIQLATKFGCFML-----DGVSIGVKGSPEYV 112 (344)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~-~DtA~~Yg~~g~sE~~lG~~l-~~~~R~~~~I~tK~~~~~~-----~~~~~~~~~~~~~i 112 (344)
+.+.-.+-++.|++.|-.. -|-+ ..|+ -..+-+.+ +.. .+-|-|= ..... .......+.+.+.+
T Consensus 75 d~~~E~~K~~~A~~~GADtiMDLS-tggd----l~~iR~~il~~s---~vpvGTV-PiYqa~~~~~~k~~~~~~mt~d~~ 145 (431)
T PRK13352 75 DIEEELEKAKVAVKYGADTIMDLS-TGGD----LDEIRRAIIEAS---PVPVGTV-PIYQAAVEAARKYGSVVDMTEDDL 145 (431)
T ss_pred CHHHHHHHHHHHHHcCCCeEeecc-CCCC----HHHHHHHHHHcC---CCCCcCh-hHHHHHHHHHhcCCChhhCCHHHH
Confidence 5555566789999999764 4544 3444 33333333 321 1111111 00000 00011236788888
Q ss_pred HHHHHHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCceeeEecCCCcHHHHHHHhhcCCceEEeeecccccc
Q 019222 113 RKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTR 192 (344)
Q Consensus 113 ~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~ 192 (344)
.+.+++-.+ |=+|.+.+|.- -+.+.++.++++|+ ..||-.-...-+..++.... .=|++..
T Consensus 146 ~~~ie~qa~----~GVDfmTiHcG-------i~~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~n~------~ENPlye 206 (431)
T PRK13352 146 FDVIEKQAK----DGVDFMTIHCG-------VTRETLERLKKSGR--IMGIVSRGGSFLAAWMLHNN------KENPLYE 206 (431)
T ss_pred HHHHHHHHH----hCCCEEEEccc-------hhHHHHHHHHhcCC--ccCeecCCHHHHHHHHHHcC------CcCchHH
Confidence 888887765 56788999974 14677889998885 56777766666665544322 3355555
Q ss_pred ccccchHHHHHHhCCcEEEcccCcccc
Q 019222 193 EIEDDIIPLCRELGIGIVAYSPLGRGF 219 (344)
Q Consensus 193 ~~~~~l~~~~~~~gi~v~a~spl~~G~ 219 (344)
.+ ..+++.|++++|.+ +|+.|+
T Consensus 207 ~f-D~lLeI~~~yDVtl----SLGDgl 228 (431)
T PRK13352 207 HF-DYLLEILKEYDVTL----SLGDGL 228 (431)
T ss_pred HH-HHHHHHHHHhCeee----eccCCc
Confidence 43 57999999999998 455554
No 36
>PRK13796 GTPase YqeH; Provisional
Probab=75.18 E-value=76 Score=30.07 Aligned_cols=120 Identities=12% Similarity=0.139 Sum_probs=81.3
Q ss_pred CCHHHHHHHHHHHHHcC---CCEEeCccCcCCCChHHHHHHHHhccCCCCcEEEEeccCcccCCCcccCCCCCHHHHHHH
Q 019222 39 LSHEVGCSIIKETFNRG---ITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKC 115 (344)
Q Consensus 39 ~~~~~~~~~l~~A~~~G---i~~~DtA~~Yg~~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~ 115 (344)
.+.++..++++..-+.- +-.+|..+.-+. -...+.+.+. .+.-++|.+|.-.... ....+.+...
T Consensus 54 ~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s---~~~~L~~~~~--~kpviLViNK~DLl~~-------~~~~~~i~~~ 121 (365)
T PRK13796 54 LTDDDFLKLLNGIGDSDALVVNVVDIFDFNGS---WIPGLHRFVG--NNPVLLVGNKADLLPK-------SVKKNKVKNW 121 (365)
T ss_pred CCHHHHHHHHHhhcccCcEEEEEEECccCCCc---hhHHHHHHhC--CCCEEEEEEchhhCCC-------ccCHHHHHHH
Confidence 46667777777776655 556887664443 2334444443 4566889999865321 2245667767
Q ss_pred HHHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCceeeEecCCCcHHHH
Q 019222 116 CEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTI 171 (344)
Q Consensus 116 ~~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir~iGvS~~~~~~l 171 (344)
++...+.+|....|++++-.- ....++++++.+.+..+.+.+-.+|.+|..-..|
T Consensus 122 l~~~~k~~g~~~~~v~~vSAk-~g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTL 176 (365)
T PRK13796 122 LRQEAKELGLRPVDVVLISAQ-KGHGIDELLEAIEKYREGRDVYVVGVTNVGKSTL 176 (365)
T ss_pred HHHHHHhcCCCcCcEEEEECC-CCCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHH
Confidence 777777788665677776543 3456888999998888888899999999976654
No 37
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=74.35 E-value=78 Score=29.76 Aligned_cols=154 Identities=12% Similarity=0.083 Sum_probs=89.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCccCcCC---C-C---hHHHHHHHHhccCCCCcEEEEeccCcccCCCcccCCCCCHHHH
Q 019222 40 SHEVGCSIIKETFNRGITLFDTSDVYGV---D-H---DNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYV 112 (344)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~---~-g---~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i 112 (344)
+.++..+.++.+.+.|++.|=.--.... + + ..+...=+++++.-..++.|..=... .++.+
T Consensus 123 ~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~D~~~i~avr~~~g~~~~l~vDaN~----------~~~~~-- 190 (352)
T cd03325 123 RPSDVAEAARARREAGFTAVKMNATEELQWIDTSKKVDAAVERVAALREAVGPDIDIGVDFHG----------RVSKP-- 190 (352)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCcccCCCHHHHHHHHHHHHHHHHhhCCCCEEEEECCC----------CCCHH--
Confidence 4455666777778899998764321110 0 0 01122223343322223333332221 12433
Q ss_pred HHHHHHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCcee-eEecCCCcHHHHHHHhhcCCceEEeeeccccc
Q 019222 113 RKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWT 191 (344)
Q Consensus 113 ~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~ 191 (344)
...+.++.|. ..++.++-.|-+.. -++.+.+|++..-+. +.|=|.++...+..++...-++++|......-
T Consensus 191 --~A~~~~~~l~--~~~i~~iEeP~~~~----d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~v~~d~~~~G 262 (352)
T cd03325 191 --MAKDLAKELE--PYRLLFIEEPVLPE----NVEALAEIAARTTIPIATGERLFSRWDFKELLEDGAVDIIQPDISHAG 262 (352)
T ss_pred --HHHHHHHhcc--ccCCcEEECCCCcc----CHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCCCCEEecCccccC
Confidence 2333444443 34677777775433 367788888776555 56667788999988888777889998866542
Q ss_pred c-ccccchHHHHHHhCCcEEEcc
Q 019222 192 R-EIEDDIIPLCRELGIGIVAYS 213 (344)
Q Consensus 192 ~-~~~~~l~~~~~~~gi~v~a~s 213 (344)
- .....+.++|+++|+.++.++
T Consensus 263 Git~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 263 GITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred CHHHHHHHHHHHHHcCCcEeccC
Confidence 1 112578999999999998655
No 38
>PRK14017 galactonate dehydratase; Provisional
Probab=73.80 E-value=41 Score=32.05 Aligned_cols=156 Identities=12% Similarity=0.105 Sum_probs=92.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCcc-----CcCCC-C-hHHHHHHHHhccCCCCcEEEEeccCcccCCCcccCCCCCHHHH
Q 019222 40 SHEVGCSIIKETFNRGITLFDTSD-----VYGVD-H-DNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYV 112 (344)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~-----~Yg~~-g-~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i 112 (344)
+.++..+.++.+++.|++.|=.-- .++.+ + ..+...=+++++.--+++.|..=... .++.+.
T Consensus 124 ~~~~~~~~a~~~~~~Gf~~~KiKv~~~~~~~~~~~~~~~d~~~i~avr~~~g~~~~l~vDaN~----------~w~~~~- 192 (382)
T PRK14017 124 RPADVAEAARARVERGFTAVKMNGTEELQYIDSPRKVDAAVARVAAVREAVGPEIGIGVDFHG----------RVHKPM- 192 (382)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCcCCccccccHHHHHHHHHHHHHHHHHhCCCCeEEEECCC----------CCCHHH-
Confidence 456677778888899999885421 01100 0 00111112233321123333332221 124432
Q ss_pred HHHHHHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCcee-eEecCCCcHHHHHHHhhcCCceEEeeeccccc
Q 019222 113 RKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWT 191 (344)
Q Consensus 113 ~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~ 191 (344)
..+.++.|. .+++.++-.|-+..+ ++.+.+|++...+. +.|=|.++...+..+++..-++++|+..+..-
T Consensus 193 ---A~~~~~~l~--~~~~~~iEeP~~~~d----~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d~~~~G 263 (382)
T PRK14017 193 ---AKVLAKELE--PYRPMFIEEPVLPEN----AEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAG 263 (382)
T ss_pred ---HHHHHHhhc--ccCCCeEECCCCcCC----HHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCeEecCccccC
Confidence 333344442 346777777754433 56788888877665 66777889999999998888899998877543
Q ss_pred c-ccccchHHHHHHhCCcEEEcccC
Q 019222 192 R-EIEDDIIPLCRELGIGIVAYSPL 215 (344)
Q Consensus 192 ~-~~~~~l~~~~~~~gi~v~a~spl 215 (344)
- .....+.++|+.+||.++.++..
T Consensus 264 Git~~~~ia~~A~~~gi~~~~h~~~ 288 (382)
T PRK14017 264 GITECRKIAAMAEAYDVALAPHCPL 288 (382)
T ss_pred CHHHHHHHHHHHHHcCCeEeecCCC
Confidence 2 11367899999999999887553
No 39
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=73.36 E-value=41 Score=31.26 Aligned_cols=95 Identities=16% Similarity=0.225 Sum_probs=52.4
Q ss_pred HHHhhcCCCcceEEEecC-CCC-CCCHHHHHHHHHHHHHcCceee-EecCC---CcHHHHHHHhhcCC-ceEEeeecccc
Q 019222 118 ASLKRLDVDYIDLYYQHR-VDT-SVSIEDTMGELKKLVEEGKIKY-IGLSE---ASADTIRRAHAVHP-ITAVQMEYSLW 190 (344)
Q Consensus 118 ~sL~~L~~d~iDl~~lH~-~~~-~~~~~e~~~~L~~l~~~G~ir~-iGvS~---~~~~~l~~~~~~~~-~~~~q~~~n~~ 190 (344)
+.-+.+|.|+||+-+.-. |+. +...++....++...+.=.+=- |..|. -+++.++.+++... -.++-..-+
T Consensus 83 ~q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~~pLInSat-- 160 (319)
T PRK04452 83 KCVEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGSAE-- 160 (319)
T ss_pred HHHHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEECC--
Confidence 444689999999865432 221 2233344444444433222222 55553 26788888776532 111122222
Q ss_pred ccccccchHHHHHHhCCcEEEcccC
Q 019222 191 TREIEDDIIPLCRELGIGIVAYSPL 215 (344)
Q Consensus 191 ~~~~~~~l~~~~~~~gi~v~a~spl 215 (344)
.+-...+.+.|+++|..|++.+|.
T Consensus 161 -~en~~~i~~lA~~y~~~Vva~s~~ 184 (319)
T PRK04452 161 -EDNYKKIAAAAMAYGHAVIAWSPL 184 (319)
T ss_pred -HHHHHHHHHHHHHhCCeEEEEcHH
Confidence 111357999999999999998754
No 40
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=73.15 E-value=30 Score=31.04 Aligned_cols=67 Identities=10% Similarity=-0.015 Sum_probs=40.3
Q ss_pred HHHHHHcCceeeEec-CCCcHHHHHHHhhcCCceE--EeeeccccccccccchHHHHHHhCCcEEEcccCc
Q 019222 149 LKKLVEEGKIKYIGL-SEASADTIRRAHAVHPITA--VQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLG 216 (344)
Q Consensus 149 L~~l~~~G~ir~iGv-S~~~~~~l~~~~~~~~~~~--~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~ 216 (344)
|.+-.++|+. .+|+ ...+.-.+.+++....+|+ +=.+..+++...-..++..|+..|+..+.+-|-.
T Consensus 10 lk~~l~~g~~-~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~ 79 (256)
T PRK10558 10 FKAALAAKQV-QIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTN 79 (256)
T ss_pred HHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCC
Confidence 4455555774 3554 2232234445455544554 4557777776544678888899999888876643
No 41
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=72.53 E-value=82 Score=29.64 Aligned_cols=152 Identities=11% Similarity=0.056 Sum_probs=86.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCccCcCCCChHHHHHHHHhccCCCCcEEEEeccCcccCCCcccCCCCCHHHHHHHHHHH
Q 019222 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEAS 119 (344)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 119 (344)
+.++..+.++.+++.|++.|=.--...+ -..+...=+++++.-.+++.|..-... .++.+...+-++ .
T Consensus 141 ~~~~~~~~a~~~~~~Gf~~~KiKvg~~~-~~~d~~~v~air~~~g~~~~l~vDaN~----------~~~~~~A~~~~~-~ 208 (355)
T cd03321 141 GAKLATERAVTAAEEGFHAVKTKIGYPT-ADEDLAVVRSIRQAVGDGVGLMVDYNQ----------SLTVPEAIERGQ-A 208 (355)
T ss_pred hHHHHHHHHHHHHHhhhHHHhhhcCCCC-hHhHHHHHHHHHHhhCCCCEEEEeCCC----------CcCHHHHHHHHH-H
Confidence 3455566667777888876532111111 111222223444433334544443322 235443322222 2
Q ss_pred HhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCcee-eEecCCCcHHHHHHHhhcCCceEEeeeccccccc-cccc
Q 019222 120 LKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDD 197 (344)
Q Consensus 120 L~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~ 197 (344)
|+.+ ++.++..|-... -++.+.+|++.--|. +.|=+.++..++..+++...++++|+..+..--- ...+
T Consensus 209 l~~~-----~i~~iEeP~~~~----d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~d~i~~~~~~~GGit~~~~ 279 (355)
T cd03321 209 LDQE-----GLTWIEEPTLQH----DYEGHARIASALRTPVQMGENWLGPEEMFKALSAGACDLVMPDLMKIGGVTGWLR 279 (355)
T ss_pred HHcC-----CCCEEECCCCCc----CHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCCCCeEecCHhhhCCHHHHHH
Confidence 3333 566777775443 356677777764432 5566678899999998888889999887764321 1257
Q ss_pred hHHHHHHhCCcEEEc
Q 019222 198 IIPLCRELGIGIVAY 212 (344)
Q Consensus 198 l~~~~~~~gi~v~a~ 212 (344)
+..+|+.+|+.++.+
T Consensus 280 ia~~A~~~gi~~~~h 294 (355)
T cd03321 280 ASALAEQAGIPMSSH 294 (355)
T ss_pred HHHHHHHcCCeeccc
Confidence 899999999998643
No 42
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=72.31 E-value=10 Score=32.91 Aligned_cols=66 Identities=23% Similarity=0.287 Sum_probs=44.5
Q ss_pred hhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCceeeEecC-CCcHHHHHHHhhcCCceEEeeecc
Q 019222 121 KRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLS-EASADTIRRAHAVHPITAVQMEYS 188 (344)
Q Consensus 121 ~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~n 188 (344)
..+|.|++-+.+........+.+. .+.+.+.. .+.+..+||. +-+++.+.++++...++++|++-+
T Consensus 20 ~~~Gad~iGfI~~~~S~R~V~~~~-a~~i~~~~-~~~i~~VgVf~~~~~~~i~~~~~~~~~d~vQLHg~ 86 (210)
T PRK01222 20 AELGADAIGFVFYPKSPRYVSPEQ-AAELAAAL-PPFVKVVGVFVNASDEEIDEIVETVPLDLLQLHGD 86 (210)
T ss_pred HHcCCCEEEEccCCCCCCcCCHHH-HHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 468999999864333222334433 33333322 3568889997 568899999999999999999754
No 43
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=72.23 E-value=20 Score=31.14 Aligned_cols=81 Identities=19% Similarity=0.258 Sum_probs=52.5
Q ss_pred hhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCc-eeeEecCC-CcHHHHHHHhhcCCceEEeeeccccccccccch
Q 019222 121 KRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGK-IKYIGLSE-ASADTIRRAHAVHPITAVQMEYSLWTREIEDDI 198 (344)
Q Consensus 121 ~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~-ir~iGvS~-~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l 198 (344)
..+|.||+-+.+.-......+.+++ .++.+.-. ++.+||.. .+.+.+.++.+..+++.+|++-.. ..+.
T Consensus 19 ~~~gad~iG~If~~~SpR~Vs~~~a----~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~~ld~VQlHG~e-----~~~~ 89 (208)
T COG0135 19 AKAGADYIGFIFVPKSPRYVSPEQA----REIASAVPKVKVVGVFVNESIEEILEIAEELGLDAVQLHGDE-----DPEY 89 (208)
T ss_pred HHcCCCEEEEEEcCCCCCcCCHHHH----HHHHHhCCCCCEEEEECCCCHHHHHHHHHhcCCCEEEECCCC-----CHHH
Confidence 5689999888666532233444333 33333333 78999985 588899999999999999998662 2345
Q ss_pred HHHHHHhC-CcEE
Q 019222 199 IPLCRELG-IGIV 210 (344)
Q Consensus 199 ~~~~~~~g-i~v~ 210 (344)
++..++.. +.++
T Consensus 90 ~~~l~~~~~~~v~ 102 (208)
T COG0135 90 IDQLKEELGVPVI 102 (208)
T ss_pred HHHHHhhcCCceE
Confidence 55555543 5554
No 44
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=72.09 E-value=61 Score=30.66 Aligned_cols=87 Identities=8% Similarity=0.007 Sum_probs=61.9
Q ss_pred ceEEEecCCCCCCCHHHHHHHHHHHHHcCcee-eEecCCCcHHHHHHHhhcCCceEEeeecccccc-ccccchHHHHHHh
Q 019222 128 IDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTR-EIEDDIIPLCREL 205 (344)
Q Consensus 128 iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~~~ 205 (344)
.++.++-.|-+.. -++.+.+|++...+. +.|=|-++..++..++.....+++|+.....-. .....+...|+.+
T Consensus 213 ~~~~~iEeP~~~~----d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGi~~~~~i~~lA~~~ 288 (368)
T TIGR02534 213 AGVELIEQPTPAE----NREALARLTRRFNVPIMADESVTGPADALAIAKASAADVFALKTTKSGGLLESKKIAAIAEAA 288 (368)
T ss_pred cChhheECCCCcc----cHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHc
Confidence 3566777775433 366677787776655 677788899999898888888899987776432 1125789999999
Q ss_pred CCcEEEcccCccc
Q 019222 206 GIGIVAYSPLGRG 218 (344)
Q Consensus 206 gi~v~a~spl~~G 218 (344)
|+.++..+.+.+|
T Consensus 289 gi~~~~~~~~~s~ 301 (368)
T TIGR02534 289 GIALYGGTMLEGP 301 (368)
T ss_pred CCceeeecchhhH
Confidence 9998876554433
No 45
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=70.42 E-value=86 Score=28.56 Aligned_cols=151 Identities=13% Similarity=0.117 Sum_probs=90.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCc----------cCcCCCChHHHHHHHHhccCC-CCcEEEEeccCcccCCCcccCCCCC
Q 019222 40 SHEVGCSIIKETFNRGITLFDTS----------DVYGVDHDNEIMVGKALKQLP-RDKIQLATKFGCFMLDGVSIGVKGS 108 (344)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA----------~~Yg~~g~sE~~lG~~l~~~~-R~~~~I~tK~~~~~~~~~~~~~~~~ 108 (344)
+.++..+..+.+.+.|+..||.- ..|+. +.+.+-+.++... .-++-|..|+.+..
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~---~~~~~~eiv~~vr~~~~~Pv~vKl~~~~----------- 165 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGT---DPEAVAEIVKAVKKATDVPVIVKLTPNV----------- 165 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccC---CHHHHHHHHHHHHhccCCCEEEEeCCCc-----------
Confidence 56777888888889999999862 22332 4555555555432 12577888875431
Q ss_pred HHHHHHHHHHHHhhcCCCcceEEE------ecCCC--C-----------CCCHHHHHHHHHHHHHcCceeeEecCCC-cH
Q 019222 109 PEYVRKCCEASLKRLDVDYIDLYY------QHRVD--T-----------SVSIEDTMGELKKLVEEGKIKYIGLSEA-SA 168 (344)
Q Consensus 109 ~~~i~~~~~~sL~~L~~d~iDl~~------lH~~~--~-----------~~~~~e~~~~L~~l~~~G~ir~iGvS~~-~~ 168 (344)
+.+. .+-+.++..|.|.|++.- +|.-. + .....-.++.+.++++.=.+--||+... ++
T Consensus 166 -~~~~-~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~ 243 (296)
T cd04740 166 -TDIV-EIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASG 243 (296)
T ss_pred -hhHH-HHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCH
Confidence 1222 333457788988887641 12100 0 0001125677778877666888888875 78
Q ss_pred HHHHHHhhcCCceEEeeeccccc-cc----cccchHHHHHHhCC
Q 019222 169 DTIRRAHAVHPITAVQMEYSLWT-RE----IEDDIIPLCRELGI 207 (344)
Q Consensus 169 ~~l~~~~~~~~~~~~q~~~n~~~-~~----~~~~l~~~~~~~gi 207 (344)
+.+.+++.. ..+.+|+-=.++. +. ...++.++.+++|.
T Consensus 244 ~da~~~l~~-GAd~V~igra~l~~p~~~~~i~~~l~~~~~~~g~ 286 (296)
T cd04740 244 EDALEFLMA-GASAVQVGTANFVDPEAFKEIIEGLEAYLDEEGI 286 (296)
T ss_pred HHHHHHHHc-CCCEEEEchhhhcChHHHHHHHHHHHHHHHHcCC
Confidence 888888874 4688887444333 11 12456677777764
No 46
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=70.38 E-value=31 Score=32.94 Aligned_cols=147 Identities=16% Similarity=0.169 Sum_probs=87.5
Q ss_pred CHHHHHHHHHHHHHcCCCE-EeCccCcCCCChHHHHHHHHh-ccCCCCcEEEEeccCcccC--CCcccCCCCCHHHHHHH
Q 019222 40 SHEVGCSIIKETFNRGITL-FDTSDVYGVDHDNEIMVGKAL-KQLPRDKIQLATKFGCFML--DGVSIGVKGSPEYVRKC 115 (344)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~-~DtA~~Yg~~g~sE~~lG~~l-~~~~R~~~~I~tK~~~~~~--~~~~~~~~~~~~~i~~~ 115 (344)
+.+.-.+-++.|++.|-.. .|-+ ..|+ -..+-+.+ +.. .+-|-|= ..... .......+.+.+.+.+.
T Consensus 75 d~~~E~~K~~~A~~~GADtiMDLS-tGgd----l~~iR~~il~~s---~vpvGTV-PiYqa~~~~~~~~~~mt~d~~~~~ 145 (423)
T TIGR00190 75 DIEEEVEKALIAIKYGADTVMDLS-TGGD----LDEIRKAILDAV---PVPVGTV-PIYQAAEKVHGAVEDMDEDDMFRA 145 (423)
T ss_pred CHHHHHHHHHHHHHcCCCeEeecc-CCCC----HHHHHHHHHHcC---CCCccCc-cHHHHHHHhcCChhhCCHHHHHHH
Confidence 5555566789999999764 4544 3454 33344433 321 1111110 00000 00011236788888888
Q ss_pred HHHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCceeeEecCCCcHHHHHHHhhcCCceEEeeeccccccccc
Q 019222 116 CEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTREIE 195 (344)
Q Consensus 116 ~~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~ 195 (344)
+++-.+ |=+|.+.+|.- -+.+.++.++++|+ ..||-.-...-+..++.... .=|++...+
T Consensus 146 ie~qa~----dGVDfmTiH~G-------i~~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~~~------~ENPlye~f- 205 (423)
T TIGR00190 146 IEKQAK----DGVDFMTIHAG-------VLLEYVERLKRSGR--ITGIVSRGGAILAAWMLHHH------KENPLYKNF- 205 (423)
T ss_pred HHHHHH----hCCCEEEEccc-------hhHHHHHHHHhCCC--ccCeecCcHHHHHHHHHHcC------CcCchHHHH-
Confidence 887765 56788899974 24677889999984 66777766666665554322 234555543
Q ss_pred cchHHHHHHhCCcEEEcccCcccc
Q 019222 196 DDIIPLCRELGIGIVAYSPLGRGF 219 (344)
Q Consensus 196 ~~l~~~~~~~gi~v~a~spl~~G~ 219 (344)
..+++.|++++|.+ +|+.|+
T Consensus 206 D~lLeI~~~yDVtl----SLGDgl 225 (423)
T TIGR00190 206 DYILEIAKEYDVTL----SLGDGL 225 (423)
T ss_pred HHHHHHHHHhCeee----eccCCc
Confidence 57999999999998 455554
No 47
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=69.96 E-value=94 Score=28.84 Aligned_cols=153 Identities=17% Similarity=0.080 Sum_probs=92.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCccCcCCCChHHHHHHHHhccCCCCcEEEEeccCcccCCCcccCCCCCHHHHHHHHHHH
Q 019222 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEAS 119 (344)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 119 (344)
+.++..+.++.+.+.|++.|=.-- +. ..+...=+++++.- .++-|..=... .++.+... .
T Consensus 132 ~~~~~~~~a~~~~~~Gf~~~KiKv--~~--~~d~~~v~~vr~~~-~~~~l~vDaN~----------~~~~~~a~-----~ 191 (324)
T TIGR01928 132 NDEQMLKQIESLKATGYKRIKLKI--TP--QIMHQLVKLRRLRF-PQIPLVIDANE----------SYDLQDFP-----R 191 (324)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEe--CC--chhHHHHHHHHHhC-CCCcEEEECCC----------CCCHHHHH-----H
Confidence 446677777888899999873221 11 11222223444322 12222222211 23554431 1
Q ss_pred HhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCcee-eEecCCCcHHHHHHHhhcCCceEEeeeccccccc-cccc
Q 019222 120 LKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDD 197 (344)
Q Consensus 120 L~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~ 197 (344)
+++|. ..++.++-.|-+. +.++.+.+|++.-.+. +.|=|.++...+..++....++++|+..+..-.- ....
T Consensus 192 ~~~l~--~~~~~~iEeP~~~----~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~~~ 265 (324)
T TIGR01928 192 LKELD--RYQLLYIEEPFKI----DDLSMLDELAKGTITPICLDESITSLDDARNLIELGNVKVINIKPGRLGGLTEVQK 265 (324)
T ss_pred HHHHh--hCCCcEEECCCCh----hHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCCEEEeCcchhcCHHHHHH
Confidence 34442 2366777777432 3457788888776555 6677888999999999888899999887754321 1257
Q ss_pred hHHHHHHhCCcEEEcccCccc
Q 019222 198 IIPLCRELGIGIVAYSPLGRG 218 (344)
Q Consensus 198 l~~~~~~~gi~v~a~spl~~G 218 (344)
+..+|+.+|+.++..+.+..|
T Consensus 266 ~~~~A~~~gi~~~~~~~~es~ 286 (324)
T TIGR01928 266 AIETCREHGAKVWIGGMLETG 286 (324)
T ss_pred HHHHHHHcCCeEEEcceEccc
Confidence 899999999999887655544
No 48
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=69.95 E-value=93 Score=28.81 Aligned_cols=152 Identities=16% Similarity=0.145 Sum_probs=83.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCccCcCCC---ChHHHHHHHHhccC-CCCcEEEEeccCcccCCCcccCCCCCHHHHHH
Q 019222 39 LSHEVGCSIIKETFNRGITLFDTSDVYGVD---HDNEIMVGKALKQL-PRDKIQLATKFGCFMLDGVSIGVKGSPEYVRK 114 (344)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~---g~sE~~lG~~l~~~-~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~ 114 (344)
++.++..++++.+.+.|++.|.-.. |.+ ..-.+++-. +++. .-.++.|+|-... +.+
T Consensus 49 ls~eei~~~i~~~~~~gi~~I~~tG--GEPll~~~l~~li~~-i~~~~~~~~i~itTNG~l----------------l~~ 109 (331)
T PRK00164 49 LSLEEIERLVRAFVALGVRKVRLTG--GEPLLRKDLEDIIAA-LAALPGIRDLALTTNGYL----------------LAR 109 (331)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEC--CCCcCccCHHHHHHH-HHhcCCCceEEEEcCchh----------------HHH
Confidence 5778999999999999998886431 210 012222222 3322 1235666665321 111
Q ss_pred HHHHHHhhcCCCcceEEEecCCCC--------CCCHHHHHHHHHHHHHcCc----eeeEecCCCcHHHHHHH---hhcCC
Q 019222 115 CCEASLKRLDVDYIDLYYQHRVDT--------SVSIEDTMGELKKLVEEGK----IKYIGLSEASADTIRRA---HAVHP 179 (344)
Q Consensus 115 ~~~~sL~~L~~d~iDl~~lH~~~~--------~~~~~e~~~~L~~l~~~G~----ir~iGvS~~~~~~l~~~---~~~~~ 179 (344)
.+ +.|...|++.|- +-||..++ ...+++++++++.+++.|. |..+.+...+.+++.++ ....+
T Consensus 110 ~~-~~L~~agl~~i~-ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~g 187 (331)
T PRK00164 110 RA-AALKDAGLDRVN-VSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRG 187 (331)
T ss_pred HH-HHHHHcCCCEEE-EEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCC
Confidence 22 345555666554 34455432 2357899999999999985 33444434444454444 33345
Q ss_pred ceEEeeecccccccc---------ccchHHHHHHhCCcEEE
Q 019222 180 ITAVQMEYSLWTREI---------EDDIIPLCRELGIGIVA 211 (344)
Q Consensus 180 ~~~~q~~~n~~~~~~---------~~~l~~~~~~~gi~v~a 211 (344)
+.+.-++|.++.... ..++++..+++|+.+..
T Consensus 188 v~v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 228 (331)
T PRK00164 188 IQLRFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTLQP 228 (331)
T ss_pred CeEEEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCcccc
Confidence 555555666543310 13567777777665443
No 49
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=69.47 E-value=22 Score=30.41 Aligned_cols=102 Identities=18% Similarity=0.206 Sum_probs=69.4
Q ss_pred HHHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCceeeEecCCCcHHHHHHHh--hcCCceEEeeeccccccc
Q 019222 116 CEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAH--AVHPITAVQMEYSLWTRE 193 (344)
Q Consensus 116 ~~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~--~~~~~~~~q~~~n~~~~~ 193 (344)
+++-|..+.-+.+|.+.+..- -+.+....+.|+++..-|+---|++.||.-+....-+ .---|..-.++|+-++..
T Consensus 64 ld~gL~~f~d~sFD~VIlsqt--LQ~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTP 141 (193)
T PF07021_consen 64 LDEGLADFPDQSFDYVILSQT--LQAVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTP 141 (193)
T ss_pred HHHhHhhCCCCCccEEehHhH--HHhHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCC
Confidence 555666666667776666532 1122334555778888898888999999777654433 223355667888877653
Q ss_pred -cc----cchHHHHHHhCCcEEEcccCcccc
Q 019222 194 -IE----DDIIPLCRELGIGIVAYSPLGRGF 219 (344)
Q Consensus 194 -~~----~~l~~~~~~~gi~v~a~spl~~G~ 219 (344)
.. .+..++|++.|+.+.-..++..+.
T Consensus 142 Nih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 142 NIHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred CcccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 11 678999999999999998888653
No 50
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=69.38 E-value=49 Score=28.35 Aligned_cols=148 Identities=12% Similarity=0.022 Sum_probs=82.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCccCc-CCCChHHHHHHHHhccCCCCcEEEEeccCcccCCCcccCCCCCHHHHHHHHHH
Q 019222 40 SHEVGCSIIKETFNRGITLFDTSDVY-GVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEA 118 (344)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Y-g~~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 118 (344)
+.+++.++++.+++.|++..|.-... .. +=..+|+... +.+++++-= .+..+.+++.++.
T Consensus 10 d~~~~~~~v~~~l~~g~~~~~i~~~~l~p---~m~~iG~~w~---~gei~va~~-------------~~a~~~~~~~l~~ 70 (197)
T TIGR02370 10 EEDDVVEGAQKALDAGIDPIELIEKGLMA---GMGVVGKLFE---DGELFLPHV-------------MMSADAMLAGIKV 70 (197)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHH---HHHHHHHHHc---CCCccHHHH-------------HHHHHHHHHHHHH
Confidence 77899999999999999877643111 11 2233444432 233333111 1234455555555
Q ss_pred HHhhcCCC----cceEEEecCCCCCCCHHHHHHHHHHHHHcCc-eeeEecCCCcHHHHHHHhhcCCceEEeeeccccccc
Q 019222 119 SLKRLDVD----YIDLYYQHRVDTSVSIEDTMGELKKLVEEGK-IKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE 193 (344)
Q Consensus 119 sL~~L~~d----~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~ 193 (344)
....+... .---+++-.+..+.+--...-.-.-|+..|. +.++|.. -+.+.+.+.+....++++.+.+......
T Consensus 71 l~~~~~~~~~~~~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~-vp~e~~v~~~~~~~pd~v~lS~~~~~~~ 149 (197)
T TIGR02370 71 LTPEMEKAVETEVLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRD-VPIDTVVEKVKKEKPLMLTGSALMTTTM 149 (197)
T ss_pred HHHHhhccccCCCCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCC-CCHHHHHHHHHHcCCCEEEEccccccCH
Confidence 55555421 1112333333333332233333444566775 7778854 4667777777778888888887765543
Q ss_pred cc-cchHHHHHHhCC
Q 019222 194 IE-DDIIPLCRELGI 207 (344)
Q Consensus 194 ~~-~~l~~~~~~~gi 207 (344)
.. .++++.+++.|.
T Consensus 150 ~~~~~~i~~l~~~~~ 164 (197)
T TIGR02370 150 YGQKDINDKLKEEGY 164 (197)
T ss_pred HHHHHHHHHHHHcCC
Confidence 22 578888888864
No 51
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=67.60 E-value=19 Score=34.12 Aligned_cols=83 Identities=11% Similarity=0.034 Sum_probs=59.4
Q ss_pred eEEEecCCCCCCCHHHHHHHHHHHHHcCcee-eEecCCCcHHHHHHHhhcCCceEEeeeccccccc-cccchHHHHHHhC
Q 019222 129 DLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDDIIPLCRELG 206 (344)
Q Consensus 129 Dl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~l~~~~~~~g 206 (344)
++.++-.|-+. +-++.+.+|++...+. +.|=|.++...+..++....++++|+.....-.- ...++.++|+.+|
T Consensus 190 ~l~~iEeP~~~----~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~~ia~~A~~~g 265 (361)
T cd03322 190 RLFWMEDPTPA----ENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLIDYIRTTVSHAGGITPARKIADLASLYG 265 (361)
T ss_pred CCCEEECCCCc----ccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcC
Confidence 44455544332 2367778888887665 6777788899999998888889999887754321 1257899999999
Q ss_pred CcEEEcccC
Q 019222 207 IGIVAYSPL 215 (344)
Q Consensus 207 i~v~a~spl 215 (344)
+.++.++..
T Consensus 266 i~~~~h~~~ 274 (361)
T cd03322 266 VRTGWHGPT 274 (361)
T ss_pred CeeeccCCC
Confidence 999876543
No 52
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=66.63 E-value=1.2e+02 Score=28.66 Aligned_cols=84 Identities=7% Similarity=0.046 Sum_probs=59.5
Q ss_pred eEEEecCCCCCCCHHHHHHHHHHHHHcCcee-eEecCCCcHHHHHHHhhcCCceEEeeecccccc-ccccchHHHHHHhC
Q 019222 129 DLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTR-EIEDDIIPLCRELG 206 (344)
Q Consensus 129 Dl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~~~g 206 (344)
++.++-.|-+.. .++.+.+|+++..+. +.|=|.++...+..+++...++++|+.....-. .....+..+|+++|
T Consensus 215 ~~~~iEeP~~~~----~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~~~~~a~~~g 290 (365)
T cd03318 215 GVELIEQPVPRE----NLDGLARLRSRNRVPIMADESVSGPADAFELARRGAADVFSLKIAKSGGLRRAQKVAAIAEAAG 290 (365)
T ss_pred CcceeeCCCCcc----cHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCCCeEEEeecccCCHHHHHHHHHHHHHcC
Confidence 556677665432 367777888776665 666677788999998888778888887665422 11257899999999
Q ss_pred CcEEEcccCc
Q 019222 207 IGIVAYSPLG 216 (344)
Q Consensus 207 i~v~a~spl~ 216 (344)
+.++..+-+.
T Consensus 291 i~~~~~~~~~ 300 (365)
T cd03318 291 IALYGGTMLE 300 (365)
T ss_pred CceeecCcch
Confidence 9988654443
No 53
>PLN02363 phosphoribosylanthranilate isomerase
Probab=66.60 E-value=32 Score=30.88 Aligned_cols=75 Identities=23% Similarity=0.307 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCceeeEecC-CCcHHHHHHHhhcCCceEEeee
Q 019222 108 SPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLS-EASADTIRRAHAVHPITAVQME 186 (344)
Q Consensus 108 ~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~ 186 (344)
+.+.++.+ .++|.|++-+.+...-....+.+.+ +.+.+......++.+||- |.+++.+.++++..+++++|++
T Consensus 56 ~~eda~~a-----~~~GaD~iGfIf~~~SpR~Vs~e~a-~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~~~ld~VQLH 129 (256)
T PLN02363 56 SARDAAMA-----VEAGADFIGMILWPKSKRSISLSVA-KEISQVAREGGAKPVGVFVDDDANTILRAADSSDLELVQLH 129 (256)
T ss_pred cHHHHHHH-----HHcCCCEEEEecCCCCCCcCCHHHH-HHHHHhccccCccEEEEEeCCCHHHHHHHHHhcCCCEEEEC
Confidence 55555544 4589999998754432233444433 333333333246679986 7789999999988999999997
Q ss_pred cc
Q 019222 187 YS 188 (344)
Q Consensus 187 ~n 188 (344)
-+
T Consensus 130 G~ 131 (256)
T PLN02363 130 GN 131 (256)
T ss_pred CC
Confidence 53
No 54
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=66.24 E-value=34 Score=27.59 Aligned_cols=63 Identities=8% Similarity=0.163 Sum_probs=46.9
Q ss_pred CCCcEEEEeccCcccCCCcccCCCCCHHHHHHHHHHHHhhcC--CCcceEEEecCCCCCCCHHHHHHHHHHHHHc
Q 019222 83 PRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLD--VDYIDLYYQHRVDTSVSIEDTMGELKKLVEE 155 (344)
Q Consensus 83 ~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~--~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~ 155 (344)
.|=-+.|+-|++.- ..+..|++.+.++++.+. +...|++++.......++.++...|..+.++
T Consensus 46 ~RlG~sVSKKvg~A----------V~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~~~f~~L~~~l~~~~~~ 110 (138)
T PRK00730 46 CKVGITVSKKFGKA----------HQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQPDFLKLLQDFLQQIPE 110 (138)
T ss_pred ceEEEEEecccccc----------hhHHHHHHHHHHHHHHhhcccCCceEEEEeccccCCCHHHHHHHHHHHHHH
Confidence 45557777787643 367888888888888763 4578999999887777788877777776654
No 55
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=66.15 E-value=60 Score=29.35 Aligned_cols=66 Identities=14% Similarity=0.037 Sum_probs=38.8
Q ss_pred HHHHHHcCceeeEec-CCCcHHHHHHHhhcCCceEE--eeeccccccccccchHHHHHHhCCcEEEcccC
Q 019222 149 LKKLVEEGKIKYIGL-SEASADTIRRAHAVHPITAV--QMEYSLWTREIEDDIIPLCRELGIGIVAYSPL 215 (344)
Q Consensus 149 L~~l~~~G~ir~iGv-S~~~~~~l~~~~~~~~~~~~--q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl 215 (344)
|.+..++|+.- +|+ .....-.+.+++....+|++ =.+.++++...-..++..++..|+..+++-|-
T Consensus 9 lk~~L~~G~~~-~G~~~~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~ 77 (267)
T PRK10128 9 FKEGLRKGEVQ-IGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVE 77 (267)
T ss_pred HHHHHHcCCce-EEEEecCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCC
Confidence 44555557753 443 23322334444444445544 55777777654456788888888888776653
No 56
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=65.77 E-value=57 Score=28.75 Aligned_cols=85 Identities=11% Similarity=0.044 Sum_probs=44.2
Q ss_pred HHHhhcCCCcceEEEecCCCCCCCHH-HHHHHHHHHHHcCceeeEecCCC-cHHHHHHHhhcCCceEEeeeccccccccc
Q 019222 118 ASLKRLDVDYIDLYYQHRVDTSVSIE-DTMGELKKLVEEGKIKYIGLSEA-SADTIRRAHAVHPITAVQMEYSLWTREIE 195 (344)
Q Consensus 118 ~sL~~L~~d~iDl~~lH~~~~~~~~~-e~~~~L~~l~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~q~~~n~~~~~~~ 195 (344)
+.++.+|.|+ +.+|..+...... --|+.+.++++.-.+.-|..-.. +++.+.++++....+.+.+---++.....
T Consensus 156 ~~l~~~G~d~---i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~~~~ 232 (243)
T cd04731 156 KEVEELGAGE---ILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFGEYT 232 (243)
T ss_pred HHHHHCCCCE---EEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcCCCC
Confidence 4445666554 5555544321100 12555666666555565555543 67778777776666666664443333221
Q ss_pred -cchHHHHHHh
Q 019222 196 -DDIIPLCREL 205 (344)
Q Consensus 196 -~~l~~~~~~~ 205 (344)
.++..+|++|
T Consensus 233 ~~~~~~~~~~~ 243 (243)
T cd04731 233 IAELKEYLAER 243 (243)
T ss_pred HHHHHHHHhhC
Confidence 3455555543
No 57
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=65.58 E-value=1e+02 Score=27.59 Aligned_cols=105 Identities=13% Similarity=0.020 Sum_probs=62.2
Q ss_pred CCHHHHHHHHHHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCceeeEecCCCcHHHHHHHhhcCCceEEeee
Q 019222 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQME 186 (344)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~ 186 (344)
.+++.+.+..++.++ -|.|+||+-. .|......++.-+.+..+++.-. .-|.|-+++++.++.+++...=..+-+.
T Consensus 23 ~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~~~~~~ee~~r~v~~i~~~~~-~piSIDT~~~~v~e~aL~~~~G~~iINs 98 (252)
T cd00740 23 EDYDEALDVARQQVE-GGAQILDLNV--DYGGLDGVSAMKWLLNLLATEPT-VPLMLDSTNWEVIEAGLKCCQGKCVVNS 98 (252)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEECC--CCCCCCHHHHHHHHHHHHHHhcC-CcEEeeCCcHHHHHHHHhhCCCCcEEEe
Confidence 467777777777765 4999999854 23321222333333333332212 2378889999999999886211223334
Q ss_pred cccccc-ccccchHHHHHHhCCcEEEcccC
Q 019222 187 YSLWTR-EIEDDIIPLCRELGIGIVAYSPL 215 (344)
Q Consensus 187 ~n~~~~-~~~~~l~~~~~~~gi~v~a~spl 215 (344)
.+.... +....+++.++++|..++.+..-
T Consensus 99 Is~~~~~e~~~~~~~~~~~~~~~vV~m~~~ 128 (252)
T cd00740 99 INLEDGEERFLKVARLAKEHGAAVVVLAFD 128 (252)
T ss_pred CCCCCCccccHHHHHHHHHhCCCEEEeccC
Confidence 444331 11246789999999999887543
No 58
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=64.89 E-value=42 Score=29.95 Aligned_cols=89 Identities=17% Similarity=0.147 Sum_probs=51.2
Q ss_pred HHHhhcCCCcceEEEecCCCCCCCHH-HHHHHHHHHHHcCceeeEecCC-CcHHHHHHHhhcCCceEEeeeccccccccc
Q 019222 118 ASLKRLDVDYIDLYYQHRVDTSVSIE-DTMGELKKLVEEGKIKYIGLSE-ASADTIRRAHAVHPITAVQMEYSLWTREIE 195 (344)
Q Consensus 118 ~sL~~L~~d~iDl~~lH~~~~~~~~~-e~~~~L~~l~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~ 195 (344)
+-|+.+|. |.+.+|..+...... --++.+.++++.-.+.-|.... .+.+.+.+++.....+.+.+---+......
T Consensus 162 ~~l~~~G~---~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~ 238 (254)
T TIGR00735 162 KEVEKLGA---GEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREIT 238 (254)
T ss_pred HHHHHcCC---CEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCC
Confidence 34456665 555566554321111 1245556666655566665554 367888888887667766553333332222
Q ss_pred -cchHHHHHHhCCcE
Q 019222 196 -DDIIPLCRELGIGI 209 (344)
Q Consensus 196 -~~l~~~~~~~gi~v 209 (344)
.++.+.|+++||.+
T Consensus 239 ~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 239 IGEVKEYLAERGIPV 253 (254)
T ss_pred HHHHHHHHHHCCCcc
Confidence 56889999999865
No 59
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=64.70 E-value=36 Score=28.39 Aligned_cols=104 Identities=11% Similarity=0.098 Sum_probs=69.2
Q ss_pred HHHHHH--HcCCCEEeCccC--------cCCCChHHHHHHHHhccCCCCcEEEEeccCcccCCCcc--cCCCCCHHHHHH
Q 019222 47 IIKETF--NRGITLFDTSDV--------YGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVS--IGVKGSPEYVRK 114 (344)
Q Consensus 47 ~l~~A~--~~Gi~~~DtA~~--------Yg~~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~--~~~~~~~~~i~~ 114 (344)
..+.|+ ..+|-|+||-.. |- |+.+..+-..|++ .|-++.|.++--..|..++- .....++..+.+
T Consensus 70 ~~d~av~~a~~v~fiDTD~itT~~~~~~y~--gr~~P~~~~~i~~-~r~DL~lLl~p~t~wvaDG~R~~~~~~~R~~F~~ 146 (187)
T COG3172 70 YEDAAVRYANKVAFIDTDFLTTQAFCKKYE--GREHPFLQALIAE-YRFDLTLLLEPNTPWVADGLRSLGSSVQRQEFQN 146 (187)
T ss_pred HHHHHHhCCCceEEEeccHHHHHHHHHHHc--ccCCchHHHHHhh-cccceEEEcCCCCceeCCCccccccHhHHHHHHH
Confidence 344454 359999998643 32 3345566677776 78888888876544444332 122346788889
Q ss_pred HHHHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcC
Q 019222 115 CCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG 156 (344)
Q Consensus 115 ~~~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G 156 (344)
-|++.|++-+..|+- |..++-......++++.+++..++
T Consensus 147 ~l~~~L~~~~~~~v~---i~~~~y~eR~~~~~~aV~ell~~~ 185 (187)
T COG3172 147 LLEQMLEENNIPFVV---IEGEDYLERYLQAVEAVEELLGEK 185 (187)
T ss_pred HHHHHHHHhCCcEEE---EcCCCHHHHHHHHHHHHHHHHhcc
Confidence 999999999877754 455544455667888888888776
No 60
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=63.91 E-value=51 Score=29.47 Aligned_cols=51 Identities=14% Similarity=0.143 Sum_probs=34.9
Q ss_pred cchHHHHHHhCCcEEEcccCcccccCCCCCCCCCCchhhhhcCCCCCchhhHHHHHHHHHHHHHHHHhCC
Q 019222 196 DDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAMHPRFSGENLEKNKLLYTRLETLAAKYGC 265 (344)
Q Consensus 196 ~~l~~~~~~~gi~v~a~spl~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~ 265 (344)
...+++|+..|...+...|...|.. ......++...+.++.+.++|+++|+
T Consensus 93 ~~~i~~a~~lGa~~i~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~l~~~a~~~gv 143 (275)
T PRK09856 93 KLAMDMAKEMNAGYTLISAAHAGYL-------------------TPPNVIWGRLAENLSELCEYAENIGM 143 (275)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCCC-------------------CCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4678999999999988766543310 00122345566778889999999886
No 61
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=63.88 E-value=35 Score=32.90 Aligned_cols=86 Identities=12% Similarity=-0.005 Sum_probs=63.0
Q ss_pred eEEEecCCCCCCCHHHHHHHHHHHHHc------CceeeEecCCCcHHHHHHHhhcCCceEEeeeccccccc-cccchHHH
Q 019222 129 DLYYQHRVDTSVSIEDTMGELKKLVEE------GKIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDDIIPL 201 (344)
Q Consensus 129 Dl~~lH~~~~~~~~~e~~~~L~~l~~~------G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~l~~~ 201 (344)
++ ++-.|-+..+.++.++.|.+|++. ..=-..+=|.++.+.+.++++..-.+++|+..+-.--- ...++.++
T Consensus 265 ~~-~iEqPv~~~d~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a~d~v~iK~~k~GGIt~a~kia~l 343 (408)
T TIGR01502 265 HL-RIEGPMDVGSRQAQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKAGHMVQIKTPDVGGVNNIARAIMY 343 (408)
T ss_pred Ce-EEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHH
Confidence 44 777776554445567788888766 33445566777899999999888889999988764321 12678999
Q ss_pred HHHhCCcEEEcccC
Q 019222 202 CRELGIGIVAYSPL 215 (344)
Q Consensus 202 ~~~~gi~v~a~spl 215 (344)
|+.+||.++..+..
T Consensus 344 A~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 344 CKANGMGAYVGGTC 357 (408)
T ss_pred HHHcCCEEEEeCCC
Confidence 99999999987654
No 62
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=63.16 E-value=30 Score=33.93 Aligned_cols=73 Identities=18% Similarity=0.247 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCceeeEecC-CCcHHHHHHHhhcCCceEEeee
Q 019222 108 SPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLS-EASADTIRRAHAVHPITAVQME 186 (344)
Q Consensus 108 ~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~ 186 (344)
+++.+..+ ..+|.|++-+.+...-....+.+.+-+....+. ++.+||- |-+++.+.++++..+++++|++
T Consensus 266 ~~eda~~a-----~~~GaD~lGfIf~~~SpR~V~~~~a~~i~~~l~----v~~VgVfv~~~~~~i~~i~~~~~lD~vQLH 336 (454)
T PRK09427 266 RPQDAKAA-----YDAGAVYGGLIFVEKSPRYVSLEQAQEIIAAAP----LRYVGVFRNADIEDIVDIAKQLSLAAVQLH 336 (454)
T ss_pred CHHHHHHH-----HhCCCCEEeeEeCCCCCCCCCHHHHHHHHHhCC----CCEEEEEeCCCHHHHHHHHHHcCCCEEEeC
Confidence 45555544 458999999865433223344443333333322 8889997 6788999999988999999998
Q ss_pred ccc
Q 019222 187 YSL 189 (344)
Q Consensus 187 ~n~ 189 (344)
-+-
T Consensus 337 G~e 339 (454)
T PRK09427 337 GDE 339 (454)
T ss_pred CCC
Confidence 753
No 63
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=62.82 E-value=3.1 Score=38.92 Aligned_cols=54 Identities=20% Similarity=0.350 Sum_probs=34.9
Q ss_pred cCceeeEecCCCcHHHHHHHhhcCC-ceEEeeeccccccccccchHHHHHHhCCc
Q 019222 155 EGKIKYIGLSEASADTIRRAHAVHP-ITAVQMEYSLWTREIEDDIIPLCRELGIG 208 (344)
Q Consensus 155 ~G~ir~iGvS~~~~~~l~~~~~~~~-~~~~q~~~n~~~~~~~~~l~~~~~~~gi~ 208 (344)
-|+|||+||--++.+.+.++.+... -+..+.+..++--..+..+++.+++.||+
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~e~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTENEKDLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCccHHHHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 4999999999999999988766532 22222333333222234577777777775
No 64
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=62.43 E-value=61 Score=28.94 Aligned_cols=64 Identities=9% Similarity=-0.084 Sum_probs=37.3
Q ss_pred HHHHcCceeeEec-CCCcHHHHHHHhhcCCceE--EeeeccccccccccchHHHHHHhCCcEEEcccC
Q 019222 151 KLVEEGKIKYIGL-SEASADTIRRAHAVHPITA--VQMEYSLWTREIEDDIIPLCRELGIGIVAYSPL 215 (344)
Q Consensus 151 ~l~~~G~ir~iGv-S~~~~~~l~~~~~~~~~~~--~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl 215 (344)
+-.++|+. .+|+ ++.+.-.+.+++....+|+ +=.+..+++...-..++..++..|+..+.+-|-
T Consensus 5 ~~l~~g~~-~~G~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~ 71 (249)
T TIGR03239 5 QDLLARET-LIGCWSALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPW 71 (249)
T ss_pred HHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCC
Confidence 33445664 3443 2332233444455554554 455777777654456788888888888887664
No 65
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=62.17 E-value=39 Score=32.55 Aligned_cols=83 Identities=7% Similarity=0.013 Sum_probs=60.0
Q ss_pred eEEEecCCCCCCCHHHHHHHHHHHHHcCcee-eEecCCCcHHHHHHHhhcCCceEEeeeccccccc-cccchHHHHHHhC
Q 019222 129 DLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDDIIPLCRELG 206 (344)
Q Consensus 129 Dl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~l~~~~~~~g 206 (344)
++.++-.|-+. +-++.+.+|++.-.+. +.|=|.++...+.++++..-++++|+.....-.- ....+..+|+.+|
T Consensus 233 ~l~~iEeP~~~----~d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~a~dii~~d~~~~GGit~~~kia~lA~~~g 308 (404)
T PRK15072 233 RLFWLEDPTPA----ENQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQLIDYIRTTVTHAGGITHLRRIADFAALYQ 308 (404)
T ss_pred CCcEEECCCCc----cCHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcCCCCEEecCccccCcHHHHHHHHHHHHHcC
Confidence 55555555332 2367778888876665 6677778999999999888889999877764321 1257899999999
Q ss_pred CcEEEcccC
Q 019222 207 IGIVAYSPL 215 (344)
Q Consensus 207 i~v~a~spl 215 (344)
+.++.++..
T Consensus 309 i~~~~h~~~ 317 (404)
T PRK15072 309 VRTGSHGPT 317 (404)
T ss_pred CceeeccCc
Confidence 999987553
No 66
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=60.79 E-value=58 Score=33.27 Aligned_cols=76 Identities=16% Similarity=0.187 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCceeeEecC-CCcHHHHHHHhhcCCceEEeee
Q 019222 108 SPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLS-EASADTIRRAHAVHPITAVQME 186 (344)
Q Consensus 108 ~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~ 186 (344)
+.+.++.+ ..+|.|++=+.+........+.+.+.+.+.+....-.++.+||- |-+++.+.++.+...++++|++
T Consensus 12 ~~eda~~a-----~~~gaD~iGfIf~~~SpR~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~~~ld~vQLH 86 (610)
T PRK13803 12 DSALISKA-----VDMLPDFIGFIFYEKSPRFVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKKNGIDFVQLH 86 (610)
T ss_pred cHHHHHHH-----HHcCCCEEEEEecCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEEC
Confidence 44555444 55899999987655433445555523333333333346779995 7789999999988999999997
Q ss_pred cc
Q 019222 187 YS 188 (344)
Q Consensus 187 ~n 188 (344)
-+
T Consensus 87 G~ 88 (610)
T PRK13803 87 GA 88 (610)
T ss_pred CC
Confidence 64
No 67
>PRK05406 LamB/YcsF family protein; Provisional
Probab=60.06 E-value=38 Score=30.19 Aligned_cols=82 Identities=13% Similarity=0.144 Sum_probs=54.6
Q ss_pred eeccCcCCCCCCCCCCHHHHHHHHHHH-HHcCCCEEeCccCcCCCChHHHHHHHHhccCCCCcEEEEeccCcccC-CCcc
Q 019222 25 GFGCGGLSGIYNKPLSHEVGCSIIKET-FNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFML-DGVS 102 (344)
Q Consensus 25 g~G~~~~g~~~~~~~~~~~~~~~l~~A-~~~Gi~~~DtA~~Yg~~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~-~~~~ 102 (344)
+||.|.+| ++++...+|..| +.+|+ |.|+ ...+-+.++-.....|-|-..-+.... +-|+
T Consensus 13 ~fG~w~~g-------~D~~lmp~IssANIACG~-------HAGD----p~~M~~tv~lA~~~gV~IGAHPgypD~~gFGR 74 (246)
T PRK05406 13 SFGAWKMG-------DDEALLPLVTSANIACGF-------HAGD----PAVMRRTVRLAKENGVAIGAHPGYPDLEGFGR 74 (246)
T ss_pred CCCCCCCC-------CHHHHHHHhhhHHHhccc-------cCCC----HHHHHHHHHHHHHcCCeEccCCCCCccCCCCC
Confidence 77888765 567788888888 57887 7787 667777765445556666665443322 1244
Q ss_pred cCCCCCHHHHHHHHHHHHhhcC
Q 019222 103 IGVKGSPEYVRKCCEASLKRLD 124 (344)
Q Consensus 103 ~~~~~~~~~i~~~~~~sL~~L~ 124 (344)
.....+++.++..+...+..|.
T Consensus 75 R~m~~s~~el~~~v~yQigAL~ 96 (246)
T PRK05406 75 RNMDLSPEELYALVLYQIGALQ 96 (246)
T ss_pred CCCCCCHHHHHHHHHHHHHHHH
Confidence 4567888888887776666653
No 68
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=59.96 E-value=56 Score=31.09 Aligned_cols=84 Identities=17% Similarity=0.076 Sum_probs=57.4
Q ss_pred EEecCCCCCCCHHHHHHHHHHHHHc------CceeeEecCCCcHHHHHHHhhcCCceEEeeeccccccc-cccchHHHHH
Q 019222 131 YYQHRVDTSVSIEDTMGELKKLVEE------GKIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDDIIPLCR 203 (344)
Q Consensus 131 ~~lH~~~~~~~~~e~~~~L~~l~~~------G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~l~~~~~ 203 (344)
+++-.|-+..+.++-++.+.+|++. +.=-..|=|.++.+.+.++++..-.+++|+..+-.--- ....+.++|+
T Consensus 230 ~~iEqP~~~~d~~~~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~a~div~~kl~k~GGIt~a~kia~lA~ 309 (369)
T cd03314 230 LRIEGPMDAGSREAQIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAGAAHMVQIKTPDLGGIDNTIDAVLYCK 309 (369)
T ss_pred EEEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhCCCCEEEecchhcCCHHHHHHHHHHHH
Confidence 4555554433322346667777766 34445566777888999988888888999887764321 1267899999
Q ss_pred HhCCcEEEccc
Q 019222 204 ELGIGIVAYSP 214 (344)
Q Consensus 204 ~~gi~v~a~sp 214 (344)
.+||.++..+.
T Consensus 310 a~Gi~~~~h~~ 320 (369)
T cd03314 310 EHGVGAYLGGS 320 (369)
T ss_pred HcCCcEEEeCC
Confidence 99999998654
No 69
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=59.74 E-value=1.8e+02 Score=28.63 Aligned_cols=171 Identities=15% Similarity=0.158 Sum_probs=93.5
Q ss_pred CHHHHHHHHHHHHH-cCCCEEeCccCcCCCC--hHHHHHHHH--hccC-CCCcEEEEeccC-----c------ccCCC-c
Q 019222 40 SHEVGCSIIKETFN-RGITLFDTSDVYGVDH--DNEIMVGKA--LKQL-PRDKIQLATKFG-----C------FMLDG-V 101 (344)
Q Consensus 40 ~~~~~~~~l~~A~~-~Gi~~~DtA~~Yg~~g--~sE~~lG~~--l~~~-~R~~~~I~tK~~-----~------~~~~~-~ 101 (344)
+.++..++++++++ .+++.=|.+..+.... .-|.+.-.| +++. -.+.+++.+=+. . .+... .
T Consensus 29 ~~~~v~~il~Kal~~~~Ls~eEal~LL~~~~~~~le~L~~~A~~ir~~~~Gn~I~lfapLyiSN~C~n~C~YCgfs~~n~ 108 (469)
T PRK09613 29 DKDEIREILEKAKEKKGLSPEEAAVLLNVEDPELLEEIFEAAREIKEKIYGNRIVLFAPLYISNYCVNNCVYCGFRRSNK 108 (469)
T ss_pred CHHHHHHHHHHHHcCCCCCHHHHHHHHcCCChhHHHHHHHHHHHHHHHHcCCEEEEEEeccccCCCCCCCccCCCccCCC
Confidence 56668888888886 4677666666554311 122222222 2221 123333322211 0 00000 1
Q ss_pred -ccCCCCCHHHHHHHHHHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHH----cCceeeEecCC--CcHHHHHHH
Q 019222 102 -SIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVE----EGKIKYIGLSE--ASADTIRRA 174 (344)
Q Consensus 102 -~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~----~G~ir~iGvS~--~~~~~l~~~ 174 (344)
......+.+.|.+.++. ++.+|...+-|+.=..| +..+++.+.++++.+++ .|.++.++|+- .+.++++++
T Consensus 109 ~i~r~~Ls~EEI~~ea~~-~~~~G~~~i~LvsGe~p-~~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~eey~~L 186 (469)
T PRK09613 109 EIKRKKLTQEEIREEVKA-LEDMGHKRLALVAGEDP-PNCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVENYKKL 186 (469)
T ss_pred CCCceECCHHHHHHHHHH-HHHCCCCEEEEEeCCCC-CCCCHHHHHHHHHHHHHhccccCcceeeEEEeecCCHHHHHHH
Confidence 11245789999999986 57799887766422222 34467777777777775 57777777753 567778777
Q ss_pred hhcC--CceEEeeeccc-----ccc-----cc--ccchHHHHHHhCCcEEEc
Q 019222 175 HAVH--PITAVQMEYSL-----WTR-----EI--EDDIIPLCRELGIGIVAY 212 (344)
Q Consensus 175 ~~~~--~~~~~q~~~n~-----~~~-----~~--~~~l~~~~~~~gi~v~a~ 212 (344)
.+.. ...++|--||. +++ .. ..+.++.+++.|+.-+..
T Consensus 187 keaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~ 238 (469)
T PRK09613 187 KEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGI 238 (469)
T ss_pred HHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCe
Confidence 6643 34445555432 111 11 135788888989874443
No 70
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=59.23 E-value=1.9e+02 Score=28.55 Aligned_cols=113 Identities=10% Similarity=0.097 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCccCcCCCChHHHHHHHHhccCCC-CcEEEEeccCcccCCCcccCCCCCHHHHHHHHHH
Q 019222 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPR-DKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEA 118 (344)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lG~~l~~~~R-~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 118 (344)
+++.....++.|.++||..|=..+.-.+-.-.+..+. +.++... -.+.|+-...+ .++.+++.+.+++
T Consensus 103 pddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~-~ak~~G~~~~~~i~yt~sp----------~~t~~y~~~~a~~ 171 (468)
T PRK12581 103 ADDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALR-AVKKTGKEAQLCIAYTTSP----------VHTLNYYLSLVKE 171 (468)
T ss_pred cchHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHH-HHHHcCCEEEEEEEEEeCC----------cCcHHHHHHHHHH
Confidence 3456777899999999999888877765111333333 2232111 11222222211 3466777776666
Q ss_pred HHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCceeeEecCCCcH
Q 019222 119 SLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASA 168 (344)
Q Consensus 119 sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir~iGvS~~~~ 168 (344)
+..+|.|. +.|-...-.....++.+.+..+++...+ -||+-.|+.
T Consensus 172 -l~~~Gad~---I~IkDtaG~l~P~~v~~Lv~alk~~~~~-pi~~H~Hnt 216 (468)
T PRK12581 172 -LVEMGADS---ICIKDMAGILTPKAAKELVSGIKAMTNL-PLIVHTHAT 216 (468)
T ss_pred -HHHcCCCE---EEECCCCCCcCHHHHHHHHHHHHhccCC-eEEEEeCCC
Confidence 45678654 4444433334456666666666665443 477766643
No 71
>PRK12569 hypothetical protein; Provisional
Probab=58.83 E-value=37 Score=30.24 Aligned_cols=82 Identities=16% Similarity=0.154 Sum_probs=55.7
Q ss_pred eeccCcCCCCCCCCCC--HHHHHHHHHHH-HHcCCCEEeCccCcCCCChHHHHHHHHhccCCCCcEEEEeccCcccC-CC
Q 019222 25 GFGCGGLSGIYNKPLS--HEVGCSIIKET-FNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFML-DG 100 (344)
Q Consensus 25 g~G~~~~g~~~~~~~~--~~~~~~~l~~A-~~~Gi~~~DtA~~Yg~~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~-~~ 100 (344)
+||.|.+| + +++...+|..| +.+|+ |.|+ ...+-+.++-.....|-|-..-+.... +-
T Consensus 14 sfG~~~~g-------~~~D~~lmp~ItsaNIACG~-------HAGD----p~~M~~tv~lA~~~~V~IGAHPsyPD~~gF 75 (245)
T PRK12569 14 GFGPWRIG-------DGVDEALMPLISSANIATGF-------HAGD----PNIMRRTVELAKAHGVGIGAHPGFRDLVGF 75 (245)
T ss_pred CCCCcCCC-------CccHHHHHHHhhhHHHhccc-------cCCC----HHHHHHHHHHHHHcCCEeccCCCCCcCCCC
Confidence 77888875 4 67788888888 58887 7788 777777776545566666655443322 12
Q ss_pred cccCCCCCHHHHHHHHHHHHhhcC
Q 019222 101 VSIGVKGSPEYVRKCCEASLKRLD 124 (344)
Q Consensus 101 ~~~~~~~~~~~i~~~~~~sL~~L~ 124 (344)
|+.....+++.++..+...+..|+
T Consensus 76 GRr~m~~s~~el~~~v~yQigaL~ 99 (245)
T PRK12569 76 GRRHINASPQELVNDVLYQLGALR 99 (245)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHH
Confidence 444567888888888776666663
No 72
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=58.71 E-value=1.2e+02 Score=26.83 Aligned_cols=151 Identities=13% Similarity=0.172 Sum_probs=86.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCcc-CcCCCC-hHHHHHHHHhccCCCCcEEEEeccCcccCCCcccCCCCCHHHHHHHHH
Q 019222 40 SHEVGCSIIKETFNRGITLFDTSD-VYGVDH-DNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCE 117 (344)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~-~Yg~~g-~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 117 (344)
+.+|+ ..|++.|..+||.=+ .-|.-| -...++.+.. +.-..+.-||..+|-.. +.+..+..+..
T Consensus 9 ~~~EA----~~a~~~gaDiID~K~P~~GaLGA~~~~vi~~i~-~~~~~~~pvSAtiGDlp---------~~p~~~~~aa~ 74 (235)
T PF04476_consen 9 NVEEA----EEALAGGADIIDLKNPAEGALGALFPWVIREIV-AAVPGRKPVSATIGDLP---------MKPGTASLAAL 74 (235)
T ss_pred CHHHH----HHHHhCCCCEEEccCCCCCCCCCCCHHHHHHHH-HHcCCCCceEEEecCCC---------CCchHHHHHHH
Confidence 44555 467889999999653 333212 2344444333 33333466888877553 24555555554
Q ss_pred HHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHH-------HHHcCceeeEecCCCc------HHHHHHHhhcCCceEEe
Q 019222 118 ASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKK-------LVEEGKIKYIGLSEAS------ADTIRRAHAVHPITAVQ 184 (344)
Q Consensus 118 ~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~-------l~~~G~ir~iGvS~~~------~~~l~~~~~~~~~~~~q 184 (344)
..- .-|+|||-+-+.-.. +.++..+.|+. ...+.++-+++.+.+. +..+.++.....++.++
T Consensus 75 ~~a-~~GvdyvKvGl~g~~----~~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvM 149 (235)
T PF04476_consen 75 GAA-ATGVDYVKVGLFGCK----DYDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFDGVM 149 (235)
T ss_pred HHH-hcCCCEEEEecCCCC----CHHHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCCEEE
Confidence 443 459999998665433 23333333333 3334568888888873 45565666666677777
Q ss_pred eec------ccccccc---ccchHHHHHHhCCcE
Q 019222 185 MEY------SLWTREI---EDDIIPLCRELGIGI 209 (344)
Q Consensus 185 ~~~------n~~~~~~---~~~l~~~~~~~gi~v 209 (344)
+.- ++++.-. -.+.++.|+++|+.+
T Consensus 150 lDTa~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~ 183 (235)
T PF04476_consen 150 LDTADKDGGSLFDHLSEEELAEFVAQARAHGLMC 183 (235)
T ss_pred EecccCCCCchhhcCCHHHHHHHHHHHHHccchh
Confidence 632 2332211 146788888888765
No 73
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=58.28 E-value=1.9e+02 Score=28.28 Aligned_cols=86 Identities=9% Similarity=0.096 Sum_probs=57.6
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHHcCcee-eEecCCCcHHHHHHHhhcCCceEEeeeccccccccccchHHHHHHhCCc
Q 019222 130 LYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIG 208 (344)
Q Consensus 130 l~~lH~~~~~~~~~e~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~ 208 (344)
+.++-.|-+..+..+-++.|.+|++...|- +.|-+.++...+..+++..-++++|......--.....+.++|+.+|+.
T Consensus 252 ~~~iEePv~~~d~~~~~~~la~Lr~~~~iPIa~dEs~~~~~~~~~li~~~avdi~~~d~~~gGIt~~~kIa~lA~a~Gi~ 331 (441)
T TIGR03247 252 LAYAEDPCGAEQGYSGREVMAEFRRATGLPTATNMIATDWRQMGHALQLQAVDIPLADPHFWTMQGSVRVAQMCHDWGLT 331 (441)
T ss_pred hceEeCCCCcccccchHHHHHHHHHhCCCCEEcCCccCCHHHHHHHHHhCCCCEEeccCCcchHHHHHHHHHHHHHcCCE
Confidence 456777755433112366777887765544 4466677888999988888888888876421111125789999999999
Q ss_pred EEEcccC
Q 019222 209 IVAYSPL 215 (344)
Q Consensus 209 v~a~spl 215 (344)
+..++.+
T Consensus 332 v~~h~~~ 338 (441)
T TIGR03247 332 WGSHSNN 338 (441)
T ss_pred EEEeCCc
Confidence 8876643
No 74
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=57.97 E-value=81 Score=30.56 Aligned_cols=109 Identities=18% Similarity=0.263 Sum_probs=65.7
Q ss_pred cccceeccCcCCC----CCCCCCCHHHHHHHHHHHHHcCCCEEeCccCcCCCChHHHHHHHHhccCCCCcEEEEeccCcc
Q 019222 21 VSRLGFGCGGLSG----IYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCF 96 (344)
Q Consensus 21 vs~lg~G~~~~g~----~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lG~~l~~~~R~~~~I~tK~~~~ 96 (344)
|.+|.+|..+|.. .-|+.-+.+++...++.+.+.|+.-|-.==.||-+
T Consensus 148 vNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIyglP---------------------------- 199 (416)
T COG0635 148 VNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYGLP---------------------------- 199 (416)
T ss_pred CCEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC----------------------------
Confidence 4477777766642 12333355666677777777777665444455541
Q ss_pred cCCCcccCCCCCHHHHHHHHHHHHhhcCCCcceEEEe-cCCCCC----------CC-HH---HHHHHH-HHHHHcCceee
Q 019222 97 MLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQ-HRVDTS----------VS-IE---DTMGEL-KKLVEEGKIKY 160 (344)
Q Consensus 97 ~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~l-H~~~~~----------~~-~~---e~~~~L-~~l~~~G~ir~ 160 (344)
.-+.+.+.+.++..++ |+.|+|.+|.+ |-|... .+ .+ +.++.. +.|.+.|- +.
T Consensus 200 ---------~QT~~~~~~~l~~a~~-l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~ 268 (416)
T COG0635 200 ---------GQTLESLKEDLEQALE-LGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGY-RQ 268 (416)
T ss_pred ---------CCCHHHHHHHHHHHHh-CCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCC-cE
Confidence 2266777777777654 67999999966 444210 11 11 344444 44556666 99
Q ss_pred EecCCCcH
Q 019222 161 IGLSEASA 168 (344)
Q Consensus 161 iGvS~~~~ 168 (344)
+|+|||..
T Consensus 269 yeisnfa~ 276 (416)
T COG0635 269 YEISNFAK 276 (416)
T ss_pred EeechhcC
Confidence 99999975
No 75
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=57.74 E-value=1.6e+02 Score=27.42 Aligned_cols=153 Identities=15% Similarity=0.116 Sum_probs=89.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCccCcCC-CC-----hHHHHHHHHhccCCCCcEEEEeccCcccCCCcccCCCCCHHHHH
Q 019222 40 SHEVGCSIIKETFNRGITLFDTSDVYGV-DH-----DNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVR 113 (344)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~-~g-----~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~ 113 (344)
+.++..+.++.+++.|++.|=.--..+. .+ ...+.+ +++++.-.+++-|..=... .++.+...
T Consensus 120 ~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~~~~~~~d~~~v-~avr~~~g~~~~l~vDan~----------~~~~~~A~ 188 (341)
T cd03327 120 DLDELPDEAKEYLKEGYRGMKMRFGYGPSDGHAGLRKNVELV-RAIREAVGYDVDLMLDCYM----------SWNLNYAI 188 (341)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCcchHHHHHHHHHH-HHHHHHhCCCCcEEEECCC----------CCCHHHHH
Confidence 4566667778888999998753211110 00 111222 2333321122323222111 22444322
Q ss_pred HHHHHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCcee-eEecCCCcHHHHHHHhhcCCceEEeeecccccc
Q 019222 114 KCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTR 192 (344)
Q Consensus 114 ~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~ 192 (344)
+.+++| +..++.++-.|-+.. -++.+.+|++...+. +.|=|.++...+.++++...++++|...+..-.
T Consensus 189 ----~~~~~l--~~~~~~~iEeP~~~~----d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a~d~i~~d~~~~GG 258 (341)
T cd03327 189 ----KMARAL--EKYELRWIEEPLIPD----DIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGRAVDILQPDVNWVGG 258 (341)
T ss_pred ----HHHHHh--hhcCCccccCCCCcc----CHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcCCCCEEecCccccCC
Confidence 333444 234677777775443 366677888887666 667777889999999988888999988765432
Q ss_pred -ccccchHHHHHHhCCcEEEcc
Q 019222 193 -EIEDDIIPLCRELGIGIVAYS 213 (344)
Q Consensus 193 -~~~~~l~~~~~~~gi~v~a~s 213 (344)
.....+..+|+.+|+.++.++
T Consensus 259 it~~~~i~~~A~~~g~~~~~h~ 280 (341)
T cd03327 259 ITELKKIAALAEAYGVPVVPHA 280 (341)
T ss_pred HHHHHHHHHHHHHcCCeecccc
Confidence 112678999999999987653
No 76
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=56.09 E-value=17 Score=24.74 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=19.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHHH
Q 019222 255 RLETLAAKYGCTTPQLALAWLL 276 (344)
Q Consensus 255 ~l~~la~~~g~s~~q~al~w~l 276 (344)
-+.+||+++|+++.++|..|+.
T Consensus 15 ~FveIAr~~~i~a~e~a~~w~~ 36 (63)
T PF11242_consen 15 SFVEIARKIGITAKEVAKAWAE 36 (63)
T ss_pred cHHHHHHHhCCCHHHHHHHHHH
Confidence 4678999999999999999975
No 77
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=55.84 E-value=1.3e+02 Score=27.19 Aligned_cols=104 Identities=13% Similarity=0.209 Sum_probs=59.8
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCcceEEEecCCCCC------CCHHHHHHHHHHHHHcCceeeEecCCCc---HHHHHHHh
Q 019222 105 VKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS------VSIEDTMGELKKLVEEGKIKYIGLSEAS---ADTIRRAH 175 (344)
Q Consensus 105 ~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~------~~~~e~~~~L~~l~~~G~ir~iGvS~~~---~~~l~~~~ 175 (344)
..++.+...+ +-+.|.++|+|+|.+-+....... ....+.++.+..+.+ +..+..+++... .+.++.+.
T Consensus 15 ~~f~~~~~~~-ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~a~ 92 (266)
T cd07944 15 WDFGDEFVKA-IYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDIDLLEPAS 92 (266)
T ss_pred ccCCHHHHHH-HHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc-cCCEEEEEECCCCCCHHHHHHHh
Confidence 4567776555 445599999999999776543211 011456666665553 245555555443 45555553
Q ss_pred hcCCceEEeeeccccccccccchHHHHHHhCCcEEE
Q 019222 176 AVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVA 211 (344)
Q Consensus 176 ~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a 211 (344)
+ ..++.+.+.+..-..+.-.+.+++++++|+.+..
T Consensus 93 ~-~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~ 127 (266)
T cd07944 93 G-SVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFF 127 (266)
T ss_pred c-CCcCEEEEecccccHHHHHHHHHHHHHCCCeEEE
Confidence 3 3355544443332222225688999999987654
No 78
>PRK00208 thiG thiazole synthase; Reviewed
Probab=55.81 E-value=1.5e+02 Score=26.45 Aligned_cols=105 Identities=13% Similarity=0.060 Sum_probs=68.5
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcceEEEecCCCCC-CCHHHHHHHHHHHHHcCceeeEecCCCcHHHHHHHhhcCCceEEe
Q 019222 106 KGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS-VSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQ 184 (344)
Q Consensus 106 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~-~~~~e~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q 184 (344)
+.+.+.-.+-.+-..+-++++.|-|=.+..+... .+..+++++.++|+++|.+-. =+++-++...+++.+. .+++++
T Consensus 72 ~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vl-pyc~~d~~~ak~l~~~-G~~~vm 149 (250)
T PRK00208 72 CRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVL-PYCTDDPVLAKRLEEA-GCAAVM 149 (250)
T ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHc-CCCEeC
Confidence 4577777888888889999999998777766543 467899999999999999763 3555566666665554 344442
Q ss_pred eeccccccc--c-ccchHHHHHH-hCCcEEEc
Q 019222 185 MEYSLWTRE--I-EDDIIPLCRE-LGIGIVAY 212 (344)
Q Consensus 185 ~~~n~~~~~--~-~~~l~~~~~~-~gi~v~a~ 212 (344)
.--++.-.. . ..+.++...+ .++.|++-
T Consensus 150 Plg~pIGsg~gi~~~~~i~~i~e~~~vpVIve 181 (250)
T PRK00208 150 PLGAPIGSGLGLLNPYNLRIIIEQADVPVIVD 181 (250)
T ss_pred CCCcCCCCCCCCCCHHHHHHHHHhcCCeEEEe
Confidence 211222111 0 1345666665 47777763
No 79
>PRK03892 ribonuclease P protein component 3; Provisional
Probab=55.80 E-value=1.4e+02 Score=25.96 Aligned_cols=168 Identities=11% Similarity=0.007 Sum_probs=96.7
Q ss_pred CcEEEEeccCcccCCCcccCCCCCHHHHHHHHHHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCceeeEecC
Q 019222 85 DKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLS 164 (344)
Q Consensus 85 ~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir~iGvS 164 (344)
++++.+-|+..... ...+..++.+++.-+..|.+ -+.|-..++. + +..++++=+.--|.|-
T Consensus 28 ~~~~~~~~~~~~~~--------~~~~~~~~d~~~l~~~yg~~---gv~i~~~np~----~----l~~~V~k~~~~vv~V~ 88 (216)
T PRK03892 28 DEVVFTKKLVLEDS--------PDFGSLKEELKELKKEYGKV---AILLVTPKPS----L----IREVKQRFLNYLIYVQ 88 (216)
T ss_pred hheEEEEEEeccCC--------CChhhhHHHHHHHHHhcCcc---eEEEecCCHH----H----HHHHHHhccceEEEEE
Confidence 56888888754321 14456778888888888866 4455444332 2 2233333345566665
Q ss_pred CCcHHHHHHHhhcCCceEEeeec-cccccccccchHHHHHHhCCcE-EEcccCcccccCCCCCCCCCCchhhhhcCCCCC
Q 019222 165 EASADTIRRAHAVHPITAVQMEY-SLWTREIEDDIIPLCRELGIGI-VAYSPLGRGFFAGKAVVESLPSESILAMHPRFS 242 (344)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~q~~~-n~~~~~~~~~l~~~~~~~gi~v-~a~spl~~G~l~~~~~~~~~~~~~~~~~~~~~~ 242 (344)
.-+...-+.+++. .+|++-.++ +.-+...+.-+...+.++||++ +..+|+-...
T Consensus 89 GGd~~vNR~AvE~-~VDVL~~P~~~Rkd~g~dHVLAKlAa~n~VAIe~~L~plL~~~----------------------- 144 (216)
T PRK03892 89 GGDLRVNRYAIER-GVDAIISPWVGRKDPGIDHVLARMAAKRGVAIGFSLSPLLRAN----------------------- 144 (216)
T ss_pred CCcHHHHHHHHhc-ccceeecccccCcCCCccHHHHHHHHHcCeEEEEecHHHHhhC-----------------------
Confidence 5555555555554 566543332 1212223345889999999998 6677775321
Q ss_pred chhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeccCCCCHHHHHHhHcccCCC
Q 019222 243 GENLEKNKLLYTRLETLAAKYGCTTPQLALAWLLHQGDDIVPIPGTTKITNLDNNIGSLALK 304 (344)
Q Consensus 243 ~~~~~~~~~~~~~l~~la~~~g~s~~q~al~w~l~~~~v~~~i~g~~~~~~l~~nl~a~~~~ 304 (344)
+..-.+.+..+..+..++++|+.+ ++++.. ..-+.+.++|.++..-...++++
T Consensus 145 G~~Rar~L~~~r~~l~L~rKYd~P-------~VISS~--A~s~~~lRsPRdl~aL~~~iGme 197 (216)
T PRK03892 145 PYERANILRFMMKAWQLVNKYKVP-------RFITSS--AESKWEVRGPRDLMSLGINIGME 197 (216)
T ss_pred chhHHHHHHHHHHHHHHHHHcCCC-------EEEecC--cchhccCCCHHHHHHHHHHhCCC
Confidence 011123455666777888888765 334433 34456667777777777666654
No 80
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=55.45 E-value=78 Score=30.40 Aligned_cols=59 Identities=19% Similarity=0.071 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHHhhcCCCcceEEEecC-CCCC------------CCHHH---HH-HHHHHHHHcCceeeEecCCCcH
Q 019222 108 SPEYVRKCCEASLKRLDVDYIDLYYQHR-VDTS------------VSIED---TM-GELKKLVEEGKIKYIGLSEASA 168 (344)
Q Consensus 108 ~~~~i~~~~~~sL~~L~~d~iDl~~lH~-~~~~------------~~~~e---~~-~~L~~l~~~G~ir~iGvS~~~~ 168 (344)
+.+.+++.++..+ +|+.++|.+|.+.- |... .+.++ .+ .+.+.|.+.|-. .+++|||..
T Consensus 180 t~e~~~~tl~~~~-~l~p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~Gy~-~yeisnfa~ 255 (400)
T PRK07379 180 TLEDWQASLEAAI-ALNPTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQAGYE-HYEISNYAK 255 (400)
T ss_pred CHHHHHHHHHHHH-cCCCCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCc-eeeeeheEC
Confidence 7777777777665 48889999887652 2110 01111 22 345567777764 578888863
No 81
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=55.37 E-value=59 Score=28.51 Aligned_cols=75 Identities=15% Similarity=0.058 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCccCcCCCChHHHHHHHHhccCCCCcEEEEeccCcccCCCcccCCCCCHHHHHHHHHHH
Q 019222 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEAS 119 (344)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 119 (344)
+.++..++.+.+.+.|..|+=|+.-|+.+|.+.+.+....+. -+.++-|-.-.|.. +.+...+-++.-
T Consensus 134 ~~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~~-~~~~~~IKasGGIr-----------t~~~a~~~i~aG 201 (221)
T PRK00507 134 TDEEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRET-VGPRVGVKASGGIR-----------TLEDALAMIEAG 201 (221)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHH-hCCCceEEeeCCcC-----------CHHHHHHHHHcC
Confidence 677889999999999999999999987556666666555443 22222222222222 566666666665
Q ss_pred HhhcCCC
Q 019222 120 LKRLDVD 126 (344)
Q Consensus 120 L~~L~~d 126 (344)
-.|+||.
T Consensus 202 A~riGtS 208 (221)
T PRK00507 202 ATRLGTS 208 (221)
T ss_pred cceEccC
Confidence 5666654
No 82
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=55.21 E-value=1.3e+02 Score=25.62 Aligned_cols=149 Identities=13% Similarity=0.073 Sum_probs=79.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCccCcCCCChHHHHHHHHhccCCCCcEEEEeccCcccCCCcccCCCCCHHHHHHHHHHH
Q 019222 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEAS 119 (344)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 119 (344)
+.+++.++++.+++.|+...|.-..+= -.+=..+|+.. .+++++++-= .+..+.++..+...
T Consensus 9 D~~~~~~~v~~~l~~g~~~~~i~~~~l--~p~m~~vG~~w---~~~~i~va~e-------------~~as~~~~~~l~~l 70 (201)
T cd02070 9 DEEETVELVKKALEAGIDPQDIIEEGL--APGMDIVGDKY---EEGEIFVPEL-------------LMAADAMKAGLDLL 70 (201)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHH--HHHHHHHHHHH---ccCCeeHHHH-------------HHHHHHHHHHHHHH
Confidence 778899999999999986655321110 00223344443 2233333221 12334444444444
Q ss_pred HhhcCCCc---ceEEEecCCCCCCCHHHHHHHHHHHHHcCc-eeeEecCCCcHHHHHHHhhcCCceEEeeeccccccccc
Q 019222 120 LKRLDVDY---IDLYYQHRVDTSVSIEDTMGELKKLVEEGK-IKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTREIE 195 (344)
Q Consensus 120 L~~L~~d~---iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~ 195 (344)
...+.... ---+++-.+..+.+.-...=.-.-|+..|. +.++| .+.+.+.+.+......++++-+..+.-.....
T Consensus 71 ~~~~~~~~~~~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG-~~~p~~~l~~~~~~~~~d~v~lS~~~~~~~~~ 149 (201)
T cd02070 71 KPLLGKSKSAKKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLG-RDVPPEEFVEAVKEHKPDILGLSALMTTTMGG 149 (201)
T ss_pred HHHHhhcCCCCCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECC-CCCCHHHHHHHHHHcCCCEEEEeccccccHHH
Confidence 44443222 113344444333332223223334566776 46678 55577777777777788888777765444222
Q ss_pred -cchHHHHHHhCC
Q 019222 196 -DDIIPLCRELGI 207 (344)
Q Consensus 196 -~~l~~~~~~~gi 207 (344)
.++++.+++.+.
T Consensus 150 ~~~~i~~lr~~~~ 162 (201)
T cd02070 150 MKEVIEALKEAGL 162 (201)
T ss_pred HHHHHHHHHHCCC
Confidence 567888887754
No 83
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=55.10 E-value=1.9e+02 Score=27.28 Aligned_cols=136 Identities=11% Similarity=0.106 Sum_probs=81.8
Q ss_pred CCCcEEEEeccCcccCC----Cc--ccCCCCCHHHHHHHHHHHHhhcCCCcceEE-EecCCCCCCCHHHHHHHHHHHHHc
Q 019222 83 PRDKIQLATKFGCFMLD----GV--SIGVKGSPEYVRKCCEASLKRLDVDYIDLY-YQHRVDTSVSIEDTMGELKKLVEE 155 (344)
Q Consensus 83 ~R~~~~I~tK~~~~~~~----~~--~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~-~lH~~~~~~~~~e~~~~L~~l~~~ 155 (344)
.|.-++|+|.+|....- .+ ......+++.|..++....+.++. .++-+ +...-++....+.+.++++.+.+.
T Consensus 99 ~r~t~cvSsqvGC~~~C~FC~tg~~g~~rnlt~~EIv~qv~~~~~~~~~-~~~~IvfmGmGEPlln~~~v~~~i~~l~~~ 177 (345)
T PRK14457 99 KRLTVCVSSQVGCPMACDFCATGKGGLKRSLKAHEIVDQVLTVQEDMQR-RVSHVVFMGMGEPLLNIDEVLAAIRCLNQD 177 (345)
T ss_pred CCCEEEEeCCCCCCCcCCcCCCCCCCCccccCHHHHHHHHHHHHHHhcC-CCCEEEEEecCccccCHHHHHHHHHHHhcc
Confidence 47778899888765432 11 223357899999999988877752 34533 333344555577899999999875
Q ss_pred -Cc-eeeEecCCC-cHHHHHHHhhcC------CceEEeeeccccccccc----------------cchHHHHHHhCCcEE
Q 019222 156 -GK-IKYIGLSEA-SADTIRRAHAVH------PITAVQMEYSLWTREIE----------------DDIIPLCRELGIGIV 210 (344)
Q Consensus 156 -G~-ir~iGvS~~-~~~~l~~~~~~~------~~~~~q~~~n~~~~~~~----------------~~l~~~~~~~gi~v~ 210 (344)
|. .|.|-||+. -+..++++.... ....+.+.+|..+.+.. ..+.+++.+.|..+.
T Consensus 178 ~~i~~r~itvST~G~~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr~I~ 257 (345)
T PRK14457 178 LGIGQRRITVSTVGVPKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAITGRRVS 257 (345)
T ss_pred cCCccCceEEECCCchhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCEEE
Confidence 43 356666665 334555555433 12234555555443211 233456667787777
Q ss_pred EcccCcccc
Q 019222 211 AYSPLGRGF 219 (344)
Q Consensus 211 a~spl~~G~ 219 (344)
..-||-.|.
T Consensus 258 iey~LIpGv 266 (345)
T PRK14457 258 FEYILLGGV 266 (345)
T ss_pred EEEEEECCc
Confidence 777776653
No 84
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=54.35 E-value=1.4e+02 Score=29.70 Aligned_cols=152 Identities=9% Similarity=0.002 Sum_probs=78.5
Q ss_pred CHHHHHHHHHHHH-HcCCCEEeCccCc--CCCChHHHHHHHHhccC-CCCcEEEEeccCcccCCCcccCCCCCHHHHHHH
Q 019222 40 SHEVGCSIIKETF-NRGITLFDTSDVY--GVDHDNEIMVGKALKQL-PRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKC 115 (344)
Q Consensus 40 ~~~~~~~~l~~A~-~~Gi~~~DtA~~Y--g~~g~sE~~lG~~l~~~-~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~ 115 (344)
+.+...+-|+... +.|+++|.-++.- .+..+.++++-..+++. ..-.+.+.|.+... ..+. .
T Consensus 223 s~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i---------~~d~-----e 288 (497)
T TIGR02026 223 DPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDI---------VRDA-----D 288 (497)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccc---------cCCH-----H
Confidence 5566666666665 4799987544321 12012333333333321 11112233332111 0022 2
Q ss_pred HHHHHhhcCCCcceE-------EEecCCCCCCCHHHHHHHHHHHHHcCceee----EecCCCcHHHHHHHhhc---CCce
Q 019222 116 CEASLKRLDVDYIDL-------YYQHRVDTSVSIEDTMGELKKLVEEGKIKY----IGLSEASADTIRRAHAV---HPIT 181 (344)
Q Consensus 116 ~~~sL~~L~~d~iDl-------~~lH~~~~~~~~~e~~~~L~~l~~~G~ir~----iGvS~~~~~~l~~~~~~---~~~~ 181 (344)
+-+.+++.|..++-+ -.+.........++..++++.+++.|..-. +|+-+.+.+.+++.++. .+++
T Consensus 289 ll~~l~~aG~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~~~ 368 (497)
T TIGR02026 289 ILHLYRRAGLVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDWDPD 368 (497)
T ss_pred HHHHHHHhCCcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHcCCC
Confidence 334455556554443 222222334567788999999999997433 46667777776554433 3343
Q ss_pred EEeeeccccccccccchHHHHHHhCC
Q 019222 182 AVQMEYSLWTREIEDDIIPLCRELGI 207 (344)
Q Consensus 182 ~~q~~~n~~~~~~~~~l~~~~~~~gi 207 (344)
++.++.+.+.+...+.+.+++.+.
T Consensus 369 --~~~~~~~tP~PGT~l~~~~~~~~~ 392 (497)
T TIGR02026 369 --QANWLMYTPWPFTSLFGELSDRVE 392 (497)
T ss_pred --ceEEEEecCCCCcHHHHHHHhhcc
Confidence 334456666556678888877654
No 85
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=53.44 E-value=1.3e+02 Score=26.65 Aligned_cols=84 Identities=12% Similarity=0.095 Sum_probs=46.8
Q ss_pred hhcCCCcceEEEecCCCCC---CCHHHHHHHHHHHHHcCceeeEecCC-CcHHHHHHHhhcCCceEEeeecccccccc-c
Q 019222 121 KRLDVDYIDLYYQHRVDTS---VSIEDTMGELKKLVEEGKIKYIGLSE-ASADTIRRAHAVHPITAVQMEYSLWTREI-E 195 (344)
Q Consensus 121 ~~L~~d~iDl~~lH~~~~~---~~~~e~~~~L~~l~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~q~~~n~~~~~~-~ 195 (344)
..+|. |-+.+|..+.. ... -|+.+.++++.-.+.-|.-.. .+.+.+.++.+....+.+.+---+..... -
T Consensus 163 ~~~g~---~~ii~~~i~~~g~~~g~--d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~~ 237 (253)
T PRK02083 163 EELGA---GEILLTSMDRDGTKNGY--DLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEITI 237 (253)
T ss_pred HHcCC---CEEEEcCCcCCCCCCCc--CHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCCH
Confidence 45554 45667654332 112 256666666655555554443 36777877776655655555322222221 1
Q ss_pred cchHHHHHHhCCcE
Q 019222 196 DDIIPLCRELGIGI 209 (344)
Q Consensus 196 ~~l~~~~~~~gi~v 209 (344)
.++.+.|++.||.+
T Consensus 238 ~~~~~~~~~~~~~~ 251 (253)
T PRK02083 238 GELKAYLAEQGIPV 251 (253)
T ss_pred HHHHHHHHHCCCcc
Confidence 46788898888765
No 86
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=53.29 E-value=1.7e+02 Score=26.23 Aligned_cols=99 Identities=20% Similarity=0.162 Sum_probs=63.3
Q ss_pred CCHHHHHHHHHHHHhhcCCCcceEEE-ecCCCCC-CCHH-H---HHHHHHHHHHc-CceeeEecCCCcHHHHHHHhhcCC
Q 019222 107 GSPEYVRKCCEASLKRLDVDYIDLYY-QHRVDTS-VSIE-D---TMGELKKLVEE-GKIKYIGLSEASADTIRRAHAVHP 179 (344)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~d~iDl~~-lH~~~~~-~~~~-e---~~~~L~~l~~~-G~ir~iGvS~~~~~~l~~~~~~~~ 179 (344)
.+++.+.+..++.+ .-|.++||+-- --+|+.. .+.+ | +...++.+++. +. -+.+-+++++.++.+++...
T Consensus 20 ~~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~--plsiDT~~~~vi~~al~~G~ 96 (257)
T TIGR01496 20 LSVDKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDV--PISVDTYRAEVARAALEAGA 96 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC--eEEEeCCCHHHHHHHHHcCC
Confidence 46677776666654 56889999932 1223322 1222 2 55556666665 43 38888999999999998743
Q ss_pred ceEEeeeccccccccccchHHHHHHhCCcEEEcc
Q 019222 180 ITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYS 213 (344)
Q Consensus 180 ~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~s 213 (344)
.-+|-+ +... ..++++.++++|..++.+.
T Consensus 97 ~iINsi--s~~~---~~~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 97 DIINDV--SGGQ---DPAMLEVAAEYGVPLVLMH 125 (257)
T ss_pred CEEEEC--CCCC---CchhHHHHHHcCCcEEEEe
Confidence 323322 3322 3468999999999999854
No 87
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=52.94 E-value=1.9e+02 Score=27.21 Aligned_cols=59 Identities=15% Similarity=0.117 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHHhhcCCCcceEEEecC-CCCC--------CCHHHHH-HHHHHHHHcCceeeEecCCCcH
Q 019222 108 SPEYVRKCCEASLKRLDVDYIDLYYQHR-VDTS--------VSIEDTM-GELKKLVEEGKIKYIGLSEASA 168 (344)
Q Consensus 108 ~~~~i~~~~~~sL~~L~~d~iDl~~lH~-~~~~--------~~~~e~~-~~L~~l~~~G~ir~iGvS~~~~ 168 (344)
+.+.+++.++..+ +++.++|.+|.+.- |... .+.++.+ .+.+.|.+.|- ..+++|||..
T Consensus 163 t~~~~~~~l~~~~-~l~~~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~l~~~Gy-~~yeis~fa~ 231 (350)
T PRK08446 163 NKKLLKEELKLAK-ELPINHLSAYSLTIEENTPFFEKNHKKKDDENLAKFFIEQLEELGF-KQYEISNFGK 231 (350)
T ss_pred CHHHHHHHHHHHH-hcCCCEEEeccceecCCChhHHhhhcCCCHHHHHHHHHHHHHHCCC-cEEEeehhhC
Confidence 7777888776654 58889998887652 2110 1122333 33555666675 4688888763
No 88
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=52.81 E-value=1e+02 Score=29.28 Aligned_cols=87 Identities=13% Similarity=0.159 Sum_probs=57.7
Q ss_pred EEecCCCCC-----------CCHHHHHHHHHHHHHcCc----eeeEecC--CCcHHHHHH---HhhcC------CceEEe
Q 019222 131 YYQHRVDTS-----------VSIEDTMGELKKLVEEGK----IKYIGLS--EASADTIRR---AHAVH------PITAVQ 184 (344)
Q Consensus 131 ~~lH~~~~~-----------~~~~e~~~~L~~l~~~G~----ir~iGvS--~~~~~~l~~---~~~~~------~~~~~q 184 (344)
+-||.|+.+ -+++++++++.+..++.. +-|+=+. |.+.++..+ ++... +..+|-
T Consensus 232 iSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNL 311 (371)
T PRK14461 232 ISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNL 311 (371)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEE
Confidence 679998643 367899999998865443 2233222 445555444 44444 568999
Q ss_pred eeccccccc----cc----cchHHHHHHhCCcEEEcccCcc
Q 019222 185 MEYSLWTRE----IE----DDIIPLCRELGIGIVAYSPLGR 217 (344)
Q Consensus 185 ~~~n~~~~~----~~----~~l~~~~~~~gi~v~a~spl~~ 217 (344)
++||+.... +. ....+..+++||.+......+.
T Consensus 312 Ip~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~ 352 (371)
T PRK14461 312 IPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGV 352 (371)
T ss_pred ecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCc
Confidence 999997532 11 3466777899999999888764
No 89
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=52.54 E-value=1.1e+02 Score=29.06 Aligned_cols=60 Identities=18% Similarity=0.157 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHHHhhcCCCcceEEEec-CCCCC-----------CC-HH---HH-HHHHHHHHHcCceeeEecCCCcH
Q 019222 107 GSPEYVRKCCEASLKRLDVDYIDLYYQH-RVDTS-----------VS-IE---DT-MGELKKLVEEGKIKYIGLSEASA 168 (344)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~d~iDl~~lH-~~~~~-----------~~-~~---e~-~~~L~~l~~~G~ir~iGvS~~~~ 168 (344)
-+.+.+.+.++..++ |+.++|.+|.+. .|... .+ .+ +. ..+.+.|.+.|-. .+++|||..
T Consensus 167 qt~~~~~~~l~~~~~-l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~-~yeis~fa~ 243 (370)
T PRK06294 167 QSLSDFIVDLHQAIT-LPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGFT-RYELASYAK 243 (370)
T ss_pred CCHHHHHHHHHHHHc-cCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCCC-eeeeeeeeC
Confidence 388888888888764 899999999775 22210 01 11 11 2244556667764 478888753
No 90
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=52.08 E-value=19 Score=27.34 Aligned_cols=54 Identities=22% Similarity=0.174 Sum_probs=40.6
Q ss_pred CCCcHHHHHHHhhcCCceEEeeecccccc-ccccchHHHHHHhCCcEEEcccCccc
Q 019222 164 SEASADTIRRAHAVHPITAVQMEYSLWTR-EIEDDIIPLCRELGIGIVAYSPLGRG 218 (344)
Q Consensus 164 S~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~~~gi~v~a~spl~~G 218 (344)
|.++...++++++...++++|+.....-- .....+.++|+++|+.++..+. ..+
T Consensus 3 ~~~~~~~~~~li~~~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~~ 57 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAGAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ESG 57 (111)
T ss_dssp TSSSHHHHHHHHHTTSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SSH
T ss_pred CCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CCc
Confidence 56788889999988888999988665422 1126789999999999999886 543
No 91
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=51.91 E-value=1.3e+02 Score=26.88 Aligned_cols=102 Identities=18% Similarity=0.201 Sum_probs=58.5
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcceEEEecCC--------CCCCCHHHHHHHHHHHHHc-CceeeEecC---CCcHHHHHH
Q 019222 106 KGSPEYVRKCCEASLKRLDVDYIDLYYQHRV--------DTSVSIEDTMGELKKLVEE-GKIKYIGLS---EASADTIRR 173 (344)
Q Consensus 106 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~--------~~~~~~~e~~~~L~~l~~~-G~ir~iGvS---~~~~~~l~~ 173 (344)
.++.+...+-++ .|.++|+++|.+-+.... ....+ .++.++.+++. ...+...++ ....+.++.
T Consensus 18 ~~~~~~k~~i~~-~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~---~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 93 (263)
T cd07943 18 QFTLEQVRAIAR-ALDAAGVPLIEVGHGDGLGGSSLNYGFAAHT---DEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKM 93 (263)
T ss_pred ecCHHHHHHHHH-HHHHcCCCEEEeecCCCCCCcccccCCCCCC---hHHHHHHHHHhccCCEEEEEecCCccCHHHHHH
Confidence 556666655554 489999999999755321 11122 34555555333 346655554 224566766
Q ss_pred HhhcCCceEEeeeccccccccccchHHHHHHhCCcEEEc
Q 019222 174 AHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAY 212 (344)
Q Consensus 174 ~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~ 212 (344)
+.+. .++.+.+..+.-+...-.+.+++++++|+.+...
T Consensus 94 a~~~-g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 94 AADL-GVDVVRVATHCTEADVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred HHHc-CCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEE
Confidence 6653 4555555443322222256889999999876553
No 92
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=51.72 E-value=49 Score=28.93 Aligned_cols=104 Identities=15% Similarity=0.223 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHHcCceeeEecCCCcHHHHHHHhhcCCceEEeeeccccccccccchHHHHHHhCCcEEEcccCccccc
Q 019222 141 SIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGFF 220 (344)
Q Consensus 141 ~~~e~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~l 220 (344)
..++..++|+.|+-+|.+--==.|.+....++.+++...+.+ |.|+=+....+++...-+.|..++.-++-+.|+-
T Consensus 74 eve~L~~~l~~l~~d~iv~GaI~s~yqk~rve~lc~~lGl~~----~~PLWg~d~~ell~e~~~~Gf~~~Iv~Vsa~gL~ 149 (223)
T COG2102 74 EVEELKEALRRLKVDGIVAGAIASEYQKERVERLCEELGLKV----YAPLWGRDPEELLEEMVEAGFEAIIVAVSAEGLD 149 (223)
T ss_pred hHHHHHHHHHhCcccEEEEchhhhHHHHHHHHHHHHHhCCEE----eecccCCCHHHHHHHHHHcCCeEEEEEEeccCCC
Confidence 466777888888733332222234555566777777655443 3333332235778888888888777777777752
Q ss_pred CCCCCCCCCCchhhhhcCCCCCchhhHHHHHHHHHHHHHHHHhCCCHH
Q 019222 221 AGKAVVESLPSESILAMHPRFSGENLEKNKLLYTRLETLAAKYGCTTP 268 (344)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~s~~ 268 (344)
... .. ..+ ..+.++.+..+.++||+.|+
T Consensus 150 ~~~-lG------------r~i-------~~~~~e~l~~l~~~ygi~~~ 177 (223)
T COG2102 150 ESW-LG------------RRI-------DREFLEELKSLNRRYGIHPA 177 (223)
T ss_pred hHH-hC------------Ccc-------CHHHHHHHHHHHHhcCCCcc
Confidence 100 00 011 12456789999999998764
No 93
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=51.36 E-value=88 Score=27.34 Aligned_cols=80 Identities=19% Similarity=0.315 Sum_probs=49.9
Q ss_pred cHHHHHHHhhcCCceEEe----eecccccccc---ccchHHHHHHhCCcEEEcccCcccccCCCCCCCCCCchhhhhcCC
Q 019222 167 SADTIRRAHAVHPITAVQ----MEYSLWTREI---EDDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAMHP 239 (344)
Q Consensus 167 ~~~~l~~~~~~~~~~~~q----~~~n~~~~~~---~~~l~~~~~~~gi~v~a~spl~~G~l~~~~~~~~~~~~~~~~~~~ 239 (344)
++.+++.+.+...+.++- .+||.++... ..++.++++.-|-.-+...|+..|-.-+. .
T Consensus 50 p~a~vka~Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd~s~~~~----~----------- 114 (272)
T COG4130 50 PAAEVKALAEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLNDGSWPGT----A----------- 114 (272)
T ss_pred CHHHHHHHHHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccCCCCCCc----c-----------
Confidence 455555555555443332 2566665432 26899999999999999999987632211 0
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHhCC
Q 019222 240 RFSGENLEKNKLLYTRLETLAAKYGC 265 (344)
Q Consensus 240 ~~~~~~~~~~~~~~~~l~~la~~~g~ 265 (344)
...+.....+++|+.|-.++|+
T Consensus 115 ----vr~~~lv~AlkaLkpil~~~gi 136 (272)
T COG4130 115 ----VRREDLVEALKALKPILDEYGI 136 (272)
T ss_pred ----cchHHHHHHHHHhhHHHHHhCc
Confidence 0113345567788888888876
No 94
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=51.08 E-value=1.1e+02 Score=28.62 Aligned_cols=71 Identities=14% Similarity=0.138 Sum_probs=49.7
Q ss_pred HHHHHHHHHcCcee-eEecCCCcHHHHHHHhhcCCceEEeeeccccccccccchHHHHHHhCCcEEEcccCccc
Q 019222 146 MGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRG 218 (344)
Q Consensus 146 ~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G 218 (344)
++.|.++++.-.+. +.|=|-++...+.+++.....+++|+..+.+-. -.++++.|+++||.++..|.+..+
T Consensus 173 ~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~~a~dvi~ik~~~~GG--it~~lkiA~~~gi~v~v~s~~es~ 244 (327)
T PRK02901 173 VEELAELRRRVGVPIAADESIRRAEDPLRVARAGAADVAVLKVAPLGG--VRAALDIAEQIGLPVVVSSALDTS 244 (327)
T ss_pred HHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCcchhCC--HHHHHHHHHHcCCcEEEeCCcccH
Confidence 45566665553332 445556677788888877788888888776543 245788999999999988777654
No 95
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=50.62 E-value=2.1e+02 Score=26.53 Aligned_cols=109 Identities=15% Similarity=0.089 Sum_probs=58.4
Q ss_pred CHHHHHHHHHHHHhhcCCCcceEEEecCCCCCC-CHHHHHHHHHHHHHcCceeeEecCC---------CcHHHHHHHhhc
Q 019222 108 SPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSV-SIEDTMGELKKLVEEGKIKYIGLSE---------ASADTIRRAHAV 177 (344)
Q Consensus 108 ~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~-~~~e~~~~L~~l~~~G~ir~iGvS~---------~~~~~l~~~~~~ 177 (344)
+.+.+.+.++..-+..++ -+ +.+=.-++.. +...+.+.++.+++.|.++.+.+.+ .+.+.++.+.+.
T Consensus 120 ~~~e~~~~i~~i~~~~~I--~~-VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~ 196 (321)
T TIGR03822 120 SPAELDAAFAYIADHPEI--WE-VILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTS 196 (321)
T ss_pred CHHHHHHHHHHHHhCCCc--cE-EEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHc
Confidence 445555555443333232 23 3343334432 2356777788888888776444433 233444444443
Q ss_pred CCceEEeeecccccc--ccccchHHHHHHhCCcEEEcccCcccc
Q 019222 178 HPITAVQMEYSLWTR--EIEDDIIPLCRELGIGIVAYSPLGRGF 219 (344)
Q Consensus 178 ~~~~~~q~~~n~~~~--~~~~~l~~~~~~~gi~v~a~spl~~G~ 219 (344)
.....+.++.|-... ......++.+++.||.+...+++..|.
T Consensus 197 g~~v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gv 240 (321)
T TIGR03822 197 GKTVYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRGV 240 (321)
T ss_pred CCcEEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCC
Confidence 322334444432111 111456788889999999999998774
No 96
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=50.42 E-value=2e+02 Score=26.33 Aligned_cols=187 Identities=15% Similarity=0.152 Sum_probs=91.4
Q ss_pred CCcccccceeccCcCCCCCC-CCCCHHHHHHHHHHHH-HcCCCEEeCccCcCCC--ChHHHHHHHHhccC--CCCcEEEE
Q 019222 17 QGLEVSRLGFGCGGLSGIYN-KPLSHEVGCSIIKETF-NRGITLFDTSDVYGVD--HDNEIMVGKALKQL--PRDKIQLA 90 (344)
Q Consensus 17 tg~~vs~lg~G~~~~g~~~~-~~~~~~~~~~~l~~A~-~~Gi~~~DtA~~Yg~~--g~sE~~lG~~l~~~--~R~~~~I~ 90 (344)
.|.+| .|.||.|.-+ .+. ...+.++..+.+...+ ..|++.||---.|+.. ..+-..+-++|+.. .+..+.|+
T Consensus 66 ~G~kV-iiS~GG~~g~-~~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq~~~p~l~vs 143 (294)
T cd06543 66 AGGDV-IVSFGGASGT-PLATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQKEYPDLKIS 143 (294)
T ss_pred cCCeE-EEEecCCCCC-ccccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHHHHCCCcEEE
Confidence 44454 4678876632 221 1224555555555555 5699999976655530 11224455666543 22345555
Q ss_pred eccCcccCCCcccCCCCCHHHHHHHHHHHHhhcC--CCcceEEEecCCCC--CCCH-HHHHHHHHHHHHcCceeeEecCC
Q 019222 91 TKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLD--VDYIDLYYQHRVDT--SVSI-EDTMGELKKLVEEGKIKYIGLSE 165 (344)
Q Consensus 91 tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~--~d~iDl~~lH~~~~--~~~~-~e~~~~L~~l~~~G~ir~iGvS~ 165 (344)
.-+..... .++++.+ .+-+..+..| +|+|.++-+..-.. ..+. ..+..+.+.++.+=+--+=+.
T Consensus 144 ~Tlp~~p~-------gl~~~g~--~~l~~a~~~Gv~~d~VNiMtmDyg~~~~~~~mg~~a~~aa~~~~~ql~~~~~~~-- 212 (294)
T cd06543 144 FTLPVLPT-------GLTPDGL--NVLEAAAANGVDLDTVNIMTMDYGSSAGSQDMGAAAISAAESLHDQLKDLYPKL-- 212 (294)
T ss_pred EecCCCCC-------CCChhHH--HHHHHHHHcCCCcceeeeeeecCCCCCCcccHHHHHHHHHHHHHHHHHHHccCC--
Confidence 55443221 2233322 2334444444 47777776654333 2332 345555555554433222222
Q ss_pred CcHHHHHHHhhcCCce-EEeeeccccccccccchHHHHHHhCCcEEEcccCcc
Q 019222 166 ASADTIRRAHAVHPIT-AVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGR 217 (344)
Q Consensus 166 ~~~~~l~~~~~~~~~~-~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~ 217 (344)
+..++-..+...|.. .+=..-..+.......+.+|++++||+.+.|-.+.+
T Consensus 213 -s~~~~~~~ig~TpMiG~nD~~~e~ft~~da~~~~~fA~~~~l~~~s~Ws~~R 264 (294)
T cd06543 213 -SDAELWAMIGVTPMIGVNDVGSEVFTLADAQTLVDFAKEKGLGRLSMWSLNR 264 (294)
T ss_pred -CHHHHHHHccccccccccCCCCceeeHHHHHHHHHHHHhCCCCeEeeeeccC
Confidence 222322223332211 110000122222236799999999999999888764
No 97
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=50.31 E-value=3.3e+02 Score=28.70 Aligned_cols=115 Identities=13% Similarity=0.071 Sum_probs=60.6
Q ss_pred CCCcEEEEeccCcccCCCcccCCCCCHHHHHHHHHHHHhhcCCCcceEEEecCCCCCC----CHHH--HHHHHHHHHHcC
Q 019222 83 PRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSV----SIED--TMGELKKLVEEG 156 (344)
Q Consensus 83 ~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~----~~~e--~~~~L~~l~~~G 156 (344)
-.+++-|..|+.......+ ..+.+... .+-+-|+..|+|+||+ |...... .... .....+++|+.=
T Consensus 615 ~~~~~~v~~ri~~~~~~~~----g~~~~~~~-~~~~~l~~~g~d~i~v---s~g~~~~~~~~~~~~~~~~~~~~~ik~~~ 686 (765)
T PRK08255 615 WPAEKPMSVRISAHDWVEG----GNTPDDAV-EIARAFKAAGADLIDV---SSGQVSKDEKPVYGRMYQTPFADRIRNEA 686 (765)
T ss_pred cCCCCeeEEEEccccccCC----CCCHHHHH-HHHHHHHhcCCcEEEe---CCCCCCcCCCCCcCccccHHHHHHHHHHc
Confidence 3457888899875422111 23455444 3444567788777775 4221100 0000 112234555554
Q ss_pred ceeeEecCCC-cHHHHHHHhhcCCceEEeee-ccccccccccchHHHHHHhCCc
Q 019222 157 KIKYIGLSEA-SADTIRRAHAVHPITAVQME-YSLWTREIEDDIIPLCRELGIG 208 (344)
Q Consensus 157 ~ir~iGvS~~-~~~~l~~~~~~~~~~~~q~~-~n~~~~~~~~~l~~~~~~~gi~ 208 (344)
++--+++.+. +++..+++++....|.+.+- --+.+++ =+...+.+.|+.
T Consensus 687 ~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~dP~---~~~~~~~~~~~~ 737 (765)
T PRK08255 687 GIATIAVGAISEADHVNSIIAAGRADLCALARPHLADPA---WTLHEAAEIGYR 737 (765)
T ss_pred CCEEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHHhCcc---HHHHHHHHcCCC
Confidence 5666676665 77788888887777766552 2222332 145556666665
No 98
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=49.45 E-value=1.6e+02 Score=25.68 Aligned_cols=99 Identities=15% Similarity=0.317 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCc------eeeEecCCC-cHHHHHHHhhcCCceE
Q 019222 110 EYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGK------IKYIGLSEA-SADTIRRAHAVHPITA 182 (344)
Q Consensus 110 ~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~------ir~iGvS~~-~~~~l~~~~~~~~~~~ 182 (344)
......++..-+-..-..|+-+++-..+.....+|-+...++|.+.|. ..|-|+++. |.-...+......+.+
T Consensus 76 ~yy~~Ri~aA~~ly~~gKV~~LLlSGDN~~~sYnEp~tM~kdL~~~GVp~~~i~lDyAGFrTLDSvvRA~kVF~~~~ftI 155 (235)
T COG2949 76 RYYTYRIDAAIALYKAGKVNYLLLSGDNATVSYNEPRTMRKDLIAAGVPAKNIFLDYAGFRTLDSVVRARKVFGTNDFTI 155 (235)
T ss_pred HhHHHHHHHHHHHHhcCCeeEEEEecCCCcccccchHHHHHHHHHcCCCHHHeeecccCccHHHHHHHHHHHcCcCcEEE
Confidence 345556777777777789999999887777788899999999999997 457788876 3334445555555665
Q ss_pred EeeeccccccccccchHHHHHHhCCcEEEccc
Q 019222 183 VQMEYSLWTREIEDDIIPLCRELGIGIVAYSP 214 (344)
Q Consensus 183 ~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~sp 214 (344)
+--.|+. +..+=.|+.+||.-+++..
T Consensus 156 ItQ~FHc------eRAlfiA~~~gIdAic~~a 181 (235)
T COG2949 156 ITQRFHC------ERALFIARQMGIDAICFAA 181 (235)
T ss_pred Eeccccc------HHHHHHHHHhCCceEEecC
Confidence 5545542 3457789999999887644
No 99
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=49.37 E-value=93 Score=30.43 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHHHHhhcCCCcceEEEec
Q 019222 107 GSPEYVRKCCEASLKRLDVDYIDLYYQH 134 (344)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~d~iDl~~lH 134 (344)
-+.+.+++.++..++ |+.++|++|.+.
T Consensus 227 qT~e~~~~~l~~~~~-l~~~~is~y~L~ 253 (449)
T PRK09058 227 QTPEIWQQDLAIVRD-LGLDGVDLYALN 253 (449)
T ss_pred CCHHHHHHHHHHHHh-cCCCEEEEeccc
Confidence 378888888877664 899999999875
No 100
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=48.56 E-value=1.9e+02 Score=25.74 Aligned_cols=114 Identities=17% Similarity=0.122 Sum_probs=61.4
Q ss_pred ccceeccCcCCCCCCCCCCHHHHHHHHHHHH-HcCCCEEeCccCcCCC-C-hHHHHHHHHhccCCCCcEEEEeccCcccC
Q 019222 22 SRLGFGCGGLSGIYNKPLSHEVGCSIIKETF-NRGITLFDTSDVYGVD-H-DNEIMVGKALKQLPRDKIQLATKFGCFML 98 (344)
Q Consensus 22 s~lg~G~~~~g~~~~~~~~~~~~~~~l~~A~-~~Gi~~~DtA~~Yg~~-g-~sE~~lG~~l~~~~R~~~~I~tK~~~~~~ 98 (344)
|+|-+||..+. +. ++++.|+ .+|-..+=.|=---+. + ..+..+-+.| +++++.+.--..
T Consensus 9 SRL~lGTgky~-------s~----~~m~~ai~aSg~evvTvalRR~~~~~~~~~~~~~~~i---~~~~~~lLPNTa---- 70 (247)
T PF05690_consen 9 SRLILGTGKYP-------SP----EVMREAIEASGAEVVTVALRRVNLGSKPGGDNILDYI---DRSGYTLLPNTA---- 70 (247)
T ss_dssp -SEEEE-STSS-------SH----HHHHHHHHHTT-SEEEEECCGSTTTS-TTCHHCCCCT---TCCTSEEEEE-T----
T ss_pred cceEEecCCCC-------CH----HHHHHHHHHhCCcEEEEEEecccCCCCCCCccHHHHh---cccCCEECCcCC----
Confidence 78999997753 33 4455555 3566666544211110 0 0112222222 445544332211
Q ss_pred CCcccCCCCCHHHHHHHHHHHHhhcCCCcceEEEecCCCCC-CCHHHHHHHHHHHHHcCcee
Q 019222 99 DGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS-VSIEDTMGELKKLVEEGKIK 159 (344)
Q Consensus 99 ~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~-~~~~e~~~~L~~l~~~G~ir 159 (344)
-..+.+.-.+..+-..+-++++.|-|=.+..+... -+..|++++-+.|+++|-+-
T Consensus 71 ------Gc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~V 126 (247)
T PF05690_consen 71 ------GCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVV 126 (247)
T ss_dssp ------T-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EE
T ss_pred ------CCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEE
Confidence 13477888888888999999999987666655443 35679999999999999643
No 101
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=48.09 E-value=1.3e+02 Score=26.15 Aligned_cols=119 Identities=18% Similarity=0.213 Sum_probs=67.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCc-cCcCCCChHHHHHHHHhccCCCCcEEEEeccCcccCCCcccCCCCCHHHHHHHHH
Q 019222 39 LSHEVGCSIIKETFNRGITLFDTS-DVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCE 117 (344)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA-~~Yg~~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 117 (344)
.+.++..++++...+.||..|++. +..+. ...+.+-+..+..+...+...+. ...+.++..++
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~--------------~~~~~i~~~~~ 74 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASE--DDFEQVRRLREALPNARLQALCR--------------ANEEDIERAVE 74 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSH--HHHHHHHHHHHHHHSSEEEEEEE--------------SCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCH--HHHHHhhhhhhhhcccccceeee--------------ehHHHHHHHHH
Confidence 367888999999999999999999 33322 12333444443323222222222 24566666665
Q ss_pred HHHhhcCCCcceEEEecCCC-----CCC----CHHHHHHHHHHHHHcCceeeEecCC---CcHHHHHHH
Q 019222 118 ASLKRLDVDYIDLYYQHRVD-----TSV----SIEDTMGELKKLVEEGKIKYIGLSE---ASADTIRRA 174 (344)
Q Consensus 118 ~sL~~L~~d~iDl~~lH~~~-----~~~----~~~e~~~~L~~l~~~G~ir~iGvS~---~~~~~l~~~ 174 (344)
.. ...|.+.+.++.-=++. ... .++.+.+.++..++.|.-..+++-. ++++.+.++
T Consensus 75 ~~-~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~ 142 (237)
T PF00682_consen 75 AA-KEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLEL 142 (237)
T ss_dssp HH-HHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHH
T ss_pred hh-HhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHH
Confidence 44 46788887765432220 011 1445666677778888888888754 344444433
No 102
>PLN00191 enolase
Probab=47.95 E-value=1.4e+02 Score=29.38 Aligned_cols=97 Identities=8% Similarity=0.055 Sum_probs=67.4
Q ss_pred CCHHHHHHHHHHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCceeeEec-C-CCcHHHHHHHhhcCCceEEe
Q 019222 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGL-S-EASADTIRRAHAVHPITAVQ 184 (344)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir~iGv-S-~~~~~~l~~~~~~~~~~~~q 184 (344)
.+++...+-+.+.+++ .++.++-.|-+.. -|+.+.+|.+..++.-+|= + ..+++.+.++++..-.++++
T Consensus 295 ~s~~e~i~~~~~L~~~-----y~I~~IEDPl~~~----D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~ 365 (457)
T PLN00191 295 KSGDELIDLYKEFVSD-----YPIVSIEDPFDQD----DWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNALL 365 (457)
T ss_pred cCHHHHHHHHHHHhhc-----CCcEEEECCCCcc----cHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCCEEE
Confidence 4666555555555443 3577888875543 3677778888888876662 2 25688899998888888888
Q ss_pred eeccccccc-cccchHHHHHHhCCcEEEc
Q 019222 185 MEYSLWTRE-IEDDIIPLCRELGIGIVAY 212 (344)
Q Consensus 185 ~~~n~~~~~-~~~~l~~~~~~~gi~v~a~ 212 (344)
+..|-.-.- ...++.++|+.+|+.++.-
T Consensus 366 iKl~qiGGITea~~~a~lA~~~G~~~~is 394 (457)
T PLN00191 366 LKVNQIGTVTESIEAVKMSKAAGWGVMTS 394 (457)
T ss_pred ecccccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 888754321 1257899999999999763
No 103
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=47.66 E-value=2.4e+02 Score=26.28 Aligned_cols=95 Identities=14% Similarity=0.061 Sum_probs=48.3
Q ss_pred CCCcEEEEeccCcccCCCcccCCCCCHHHHHHHHHHHHhhcCCCcceEEEecCCC--CC--CCH--HHHHHHHHHHHHcC
Q 019222 83 PRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVD--TS--VSI--EDTMGELKKLVEEG 156 (344)
Q Consensus 83 ~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~--~~--~~~--~e~~~~L~~l~~~G 156 (344)
-.+++.|..|+.......+ ..+.+... .+-+.|+..|+|+|++ |... .. .+. ...++.++++++.-
T Consensus 218 vG~d~~v~vri~~~~~~~~----g~~~~e~~-~ia~~Le~~gvd~iev---~~g~~~~~~~~~~~~~~~~~~~~~ir~~~ 289 (336)
T cd02932 218 WPEDKPLFVRISATDWVEG----GWDLEDSV-ELAKALKELGVDLIDV---SSGGNSPAQKIPVGPGYQVPFAERIRQEA 289 (336)
T ss_pred cCCCceEEEEEcccccCCC----CCCHHHHH-HHHHHHHHcCCCEEEE---CCCCCCcccccCCCccccHHHHHHHHhhC
Confidence 3456778888764321111 22443333 2334456677666653 3211 00 011 11235556666665
Q ss_pred ceeeEecCCC-cHHHHHHHhhcCCceEEee
Q 019222 157 KIKYIGLSEA-SADTIRRAHAVHPITAVQM 185 (344)
Q Consensus 157 ~ir~iGvS~~-~~~~l~~~~~~~~~~~~q~ 185 (344)
.+--++.... +++.++++++....|.+++
T Consensus 290 ~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~ 319 (336)
T cd02932 290 GIPVIAVGLITDPEQAEAILESGRADLVAL 319 (336)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCCCeehh
Confidence 6666666664 6777777776655555544
No 104
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=47.29 E-value=1.2e+02 Score=29.65 Aligned_cols=60 Identities=20% Similarity=0.277 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHhhcCCCcceEEEe-cCCCCC-----------CCHHHH----HHHHHHHHHcCceeeEecCCCcH
Q 019222 107 GSPEYVRKCCEASLKRLDVDYIDLYYQ-HRVDTS-----------VSIEDT----MGELKKLVEEGKIKYIGLSEASA 168 (344)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~d~iDl~~l-H~~~~~-----------~~~~e~----~~~L~~l~~~G~ir~iGvS~~~~ 168 (344)
-+.+.+.+.++..+ +|+.++|.+|.+ |.|... .+.++. ..+.+.|.+.|-.+ +|+++|..
T Consensus 216 qt~e~~~~tl~~~~-~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~~-~~~~~far 291 (453)
T PRK13347 216 QTVESFRETLDKVI-ALSPDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGYVP-IGLDHFAL 291 (453)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCCEE-EeccceeC
Confidence 37888888887776 589999999865 433210 112222 23556788888755 89999964
No 105
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=47.16 E-value=2.6e+02 Score=26.67 Aligned_cols=147 Identities=14% Similarity=0.010 Sum_probs=84.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCccCcCCCChH--HHHHHHHhccCCCCcEEEEeccCcccCCCcccCCCCCHHHHHHHHH
Q 019222 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDN--EIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCE 117 (344)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~s--E~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 117 (344)
+.++..+.++.+++.|++.|=.-- |..... .+.+ +++++.--+++-|..=... .++.+. .-
T Consensus 160 ~~~~~~~~a~~~~~~Gf~~~Kikv--g~~~~~~di~~v-~avRe~~G~~~~l~vDaN~----------~w~~~~----A~ 222 (385)
T cd03326 160 DLGRLRDEMRRYLDRGYTVVKIKI--GGAPLDEDLRRI-EAALDVLGDGARLAVDANG----------RFDLET----AI 222 (385)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeC--CCCCHHHHHHHH-HHHHHhcCCCCeEEEECCC----------CCCHHH----HH
Confidence 445666777778899999875321 110111 1222 2333321123333222221 124332 22
Q ss_pred HHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCcee-eEecCCCcHHHHHHHhhcCCc----eEEeeecccccc
Q 019222 118 ASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPI----TAVQMEYSLWTR 192 (344)
Q Consensus 118 ~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~----~~~q~~~n~~~~ 192 (344)
+.++.|. .+++.++-.|-+..+ ++.+.+|++...+- +.|=|.++...+.++++..-. +++|+...-.--
T Consensus 223 ~~~~~l~--~~~~~~iEeP~~~~d----~~~~~~L~~~~~iPIa~gEs~~~~~~~~~li~~~a~~~~~div~~d~~~~GG 296 (385)
T cd03326 223 AYAKALA--PYGLRWYEEPGDPLD----YALQAELADHYDGPIATGENLFSLQDARNLLRYGGMRPDRDVLQFDPGLSYG 296 (385)
T ss_pred HHHHHhh--CcCCCEEECCCCccC----HHHHHHHHhhCCCCEEcCCCcCCHHHHHHHHHhCCccccCCEEEeCchhhCC
Confidence 2334442 347778888765433 66677787776554 667777889999998887655 888888765432
Q ss_pred c-cccchHHHHHHhCCcE
Q 019222 193 E-IEDDIIPLCRELGIGI 209 (344)
Q Consensus 193 ~-~~~~l~~~~~~~gi~v 209 (344)
- ....+.++|+.+|+.+
T Consensus 297 it~~~kia~lA~a~gi~~ 314 (385)
T cd03326 297 LPEYLRMLDVLEAHGWSR 314 (385)
T ss_pred HHHHHHHHHHHHHcCCCC
Confidence 1 1257899999999984
No 106
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=46.65 E-value=80 Score=27.59 Aligned_cols=98 Identities=20% Similarity=0.222 Sum_probs=55.5
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCceeeEecCCCcHHHHHHHhh---cCCceE
Q 019222 106 KGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHA---VHPITA 182 (344)
Q Consensus 106 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~---~~~~~~ 182 (344)
.++.+...+-+ +.|.++|+++|.+- .|.......+.++.+.+.....++ .+++......++.+.+ ...++.
T Consensus 10 ~~~~~~k~~i~-~~L~~~Gv~~iEvg---~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~g~~~ 83 (237)
T PF00682_consen 10 AFSTEEKLEIA-KALDEAGVDYIEVG---FPFASEDDFEQVRRLREALPNARL--QALCRANEEDIERAVEAAKEAGIDI 83 (237)
T ss_dssp T--HHHHHHHH-HHHHHHTTSEEEEE---HCTSSHHHHHHHHHHHHHHHSSEE--EEEEESCHHHHHHHHHHHHHTTSSE
T ss_pred CcCHHHHHHHH-HHHHHhCCCEEEEc---ccccCHHHHHHhhhhhhhhccccc--ceeeeehHHHHHHHHHhhHhccCCE
Confidence 35555555544 45999999999987 333333334556666666666444 4444455555555333 344554
Q ss_pred Eeeeccccc--c------------ccccchHHHHHHhCCcE
Q 019222 183 VQMEYSLWT--R------------EIEDDIIPLCRELGIGI 209 (344)
Q Consensus 183 ~q~~~n~~~--~------------~~~~~l~~~~~~~gi~v 209 (344)
+.+..+.-+ . +.-.+.+.+++++|+.+
T Consensus 84 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 84 IRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp EEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred EEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 444333322 0 01156789999999998
No 107
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=46.34 E-value=2e+02 Score=25.86 Aligned_cols=103 Identities=17% Similarity=0.103 Sum_probs=55.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCcc-CcCCCChHHHHHHHHhccCCC-CcEEEEeccCcccCCCcccCCCCCHHHHHHHHH
Q 019222 40 SHEVGCSIIKETFNRGITLFDTSD-VYGVDHDNEIMVGKALKQLPR-DKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCE 117 (344)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~-~Yg~~g~sE~~lG~~l~~~~R-~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 117 (344)
+.++..++++...+.||..|+... .++. .+.-.-+.+.+..+ ..++.. . ....+.++++++
T Consensus 20 s~~~k~~i~~~L~~~Gv~~IEvG~P~~~~---~~~~~~~~l~~~~~~~~v~~~---~-----------r~~~~di~~a~~ 82 (262)
T cd07948 20 DTEDKIEIAKALDAFGVDYIELTSPAASP---QSRADCEAIAKLGLKAKILTH---I-----------RCHMDDARIAVE 82 (262)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCH---HHHHHHHHHHhCCCCCcEEEE---e-----------cCCHHHHHHHHH
Confidence 668889999999999999999863 2222 22222333433222 222111 0 124455555443
Q ss_pred HHHhhcCCCcceEEEecCC-----CCCCCHH----HHHHHHHHHHHcCceeeEecC
Q 019222 118 ASLKRLDVDYIDLYYQHRV-----DTSVSIE----DTMGELKKLVEEGKIKYIGLS 164 (344)
Q Consensus 118 ~sL~~L~~d~iDl~~lH~~-----~~~~~~~----e~~~~L~~l~~~G~ir~iGvS 164 (344)
.|++.|.++.-=++ ......+ .+.+.++.+++.|.--.+++.
T Consensus 83 -----~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e 133 (262)
T cd07948 83 -----TGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSE 133 (262)
T ss_pred -----cCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 47777776652111 0112233 345555777788866556553
No 108
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=46.34 E-value=2.2e+02 Score=25.46 Aligned_cols=103 Identities=15% Similarity=0.105 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCccC-----------cCCCChHHHHHHHHhccCCCCcEEEEeccCcccCCCcccCCCC
Q 019222 39 LSHEVGCSIIKETFNRGITLFDTSDV-----------YGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKG 107 (344)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~-----------Yg~~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~ 107 (344)
.+.++..++++...+.||..++.... |-. -..++.+.+..+..+..++.+..- +. ..
T Consensus 19 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~-~~~~e~i~~~~~~~~~~~~~~~~~--~~---------~~ 86 (263)
T cd07943 19 FTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAA-HTDEEYLEAAAEALKQAKLGVLLL--PG---------IG 86 (263)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCC-CChHHHHHHHHHhccCCEEEEEec--CC---------cc
Confidence 47788999999999999999998721 111 123455555544334344432221 00 01
Q ss_pred CHHHHHHHHHHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCceeeEec
Q 019222 108 SPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGL 163 (344)
Q Consensus 108 ~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir~iGv 163 (344)
..+. ++..++ .|++.+-++.-- .+...+.+.++.+++.|.--.+.+
T Consensus 87 ~~~~----i~~a~~-~g~~~iri~~~~-----s~~~~~~~~i~~ak~~G~~v~~~~ 132 (263)
T cd07943 87 TVDD----LKMAAD-LGVDVVRVATHC-----TEADVSEQHIGAARKLGMDVVGFL 132 (263)
T ss_pred CHHH----HHHHHH-cCCCEEEEEech-----hhHHHHHHHHHHHHHCCCeEEEEE
Confidence 2233 333333 366665553311 123456667777777776544444
No 109
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=46.11 E-value=1.7e+02 Score=25.99 Aligned_cols=64 Identities=14% Similarity=0.016 Sum_probs=34.4
Q ss_pred HHHHHHcCceeeEec--CCCcHHHHHHHhhcCCce--EEeeeccccccccccchHHHHHHhCCcEEEccc
Q 019222 149 LKKLVEEGKIKYIGL--SEASADTIRRAHAVHPIT--AVQMEYSLWTREIEDDIIPLCRELGIGIVAYSP 214 (344)
Q Consensus 149 L~~l~~~G~ir~iGv--S~~~~~~l~~~~~~~~~~--~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~sp 214 (344)
|.+..++|+. .+|+ ...++..++.+. ..++| ++=++.++++.+.-..++..++..|..++.+-|
T Consensus 3 lk~~l~~g~~-~~g~~~~~~~p~~~e~~~-~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~ 70 (249)
T TIGR02311 3 FKQALKEGQP-QIGLWLGLADPYAAEICA-GAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPA 70 (249)
T ss_pred HHHHHHCCCc-eEEEEEeCCCcHHHHHHH-hcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECC
Confidence 3444556775 2443 333454444443 34454 444567776543223466777777877777644
No 110
>COG0282 ackA Acetate kinase [Energy production and conversion]
Probab=45.58 E-value=1.2e+02 Score=28.97 Aligned_cols=123 Identities=14% Similarity=0.166 Sum_probs=71.1
Q ss_pred HHHHHHHHHcCceeeEecCCCcHHH----HHHHhhcCCceEEeeeccccccccccchHHHHHHhCCcE---EEcccCccc
Q 019222 146 MGELKKLVEEGKIKYIGLSEASADT----IRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGI---VAYSPLGRG 218 (344)
Q Consensus 146 ~~~L~~l~~~G~ir~iGvS~~~~~~----l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v---~a~spl~~G 218 (344)
+..-.++.++-.||.+|+-..|-.- +.+.+...--+.+.+-.++-+.. -=-|-++|..| |.+.||. |
T Consensus 160 YalP~~~y~~~gIRrYGFHGtSh~YVs~~aa~~L~k~~~~l~~I~~HLGNGA-----SicAiknGkSvDTSMGfTPLe-G 233 (396)
T COG0282 160 YALPYELYEKYGIRRYGFHGTSHKYVSQRAAEILGKPLEDLNLITCHLGNGA-----SICAIKNGKSVDTSMGFTPLE-G 233 (396)
T ss_pred ecCCHHHHHhcCceecccCccchHHHHHHHHHHhCCCccccCEEEEEecCch-----hhhhhhCCeeeccCCCCCccc-c
Confidence 3344678888999999998766543 33333333236667777775542 11233777665 6788887 5
Q ss_pred ccCCCCCCCCCCchhhhhcCCCCCchhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeccCCC-CHHHHHHh
Q 019222 219 FFAGKAVVESLPSESILAMHPRFSGENLEKNKLLYTRLETLAAKYGCTTPQLALAWLLHQGDDIVPIPGTT-KITNLDNN 297 (344)
Q Consensus 219 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~s~~q~al~w~l~~~~v~~~i~g~~-~~~~l~~n 297 (344)
+.-|.+..+--| ..+.-++++.|+|+.|+.---.-+.+ ..=|.|-+ +...++++
T Consensus 234 l~MGTRsGdiDP-----------------------~ii~~l~~~~~~s~~~i~~~LNkkSG--llGlSg~ssD~R~l~~~ 288 (396)
T COG0282 234 LMMGTRSGDIDP-----------------------GIILYLMEQEGMSAEEIDTLLNKKSG--LLGLSGLSSDMRDLEEA 288 (396)
T ss_pred eeccCCCCCCCh-----------------------HHHHHHHHhcCCCHHHHHHHHhhhcc--ccccccccchHHHHHHH
Confidence 555543221111 25667788889999997644333333 34455533 35555555
Q ss_pred Hc
Q 019222 298 IG 299 (344)
Q Consensus 298 l~ 299 (344)
.+
T Consensus 289 ~~ 290 (396)
T COG0282 289 AA 290 (396)
T ss_pred hc
Confidence 54
No 111
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=45.01 E-value=2.3e+02 Score=25.33 Aligned_cols=104 Identities=15% Similarity=0.077 Sum_probs=68.1
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcceEEEecCCCCC-CCHHHHHHHHHHHHHcCceeeEecCCCcHHHHHHHhhcCCceEEe
Q 019222 106 KGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS-VSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQ 184 (344)
Q Consensus 106 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~-~~~~e~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q 184 (344)
..+.+.-.+-.+-..+-++++.|-|=.+..+... .+..+++++.++|+++|.+- +=+++-++...+++.+. .+++++
T Consensus 72 ~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~v-lpyc~dd~~~ar~l~~~-G~~~vm 149 (248)
T cd04728 72 CRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTV-LPYCTDDPVLAKRLEDA-GCAAVM 149 (248)
T ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHc-CCCEeC
Confidence 4577777788888889899999998777766543 46789999999999999976 33555566666665554 344443
Q ss_pred eeccccccc--c-ccchHHHHHH-hCCcEEE
Q 019222 185 MEYSLWTRE--I-EDDIIPLCRE-LGIGIVA 211 (344)
Q Consensus 185 ~~~n~~~~~--~-~~~l~~~~~~-~gi~v~a 211 (344)
.--++.-.. . ..++++...+ .++.|++
T Consensus 150 Plg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~ 180 (248)
T cd04728 150 PLGSPIGSGQGLLNPYNLRIIIERADVPVIV 180 (248)
T ss_pred CCCcCCCCCCCCCCHHHHHHHHHhCCCcEEE
Confidence 312222211 0 1345555555 4677776
No 112
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=44.80 E-value=1.3e+02 Score=26.68 Aligned_cols=108 Identities=19% Similarity=0.145 Sum_probs=58.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCccCcCCCChHHHHHHH--------------------HhccCCCCcEEEEeccCcccC
Q 019222 39 LSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGK--------------------ALKQLPRDKIQLATKFGCFML 98 (344)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lG~--------------------~l~~~~R~~~~I~tK~~~~~~ 98 (344)
.+.++..++.+.|-+.||.||=|.-.-. +-..+-+ .+++ ....++|+|=..
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~----s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~-tgkPvIlSTG~s---- 123 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEE----SVDFLEELGVPAYKIASGDLTNLPLLEYIAK-TGKPVILSTGMS---- 123 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHH----HHHHHHHHT-SEEEE-GGGTT-HHHHHHHHT-T-S-EEEE-TT-----
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHH----HHHHHHHcCCCEEEeccccccCHHHHHHHHH-hCCcEEEECCCC----
Confidence 4778889999999999999997664322 1222211 1111 344466666533
Q ss_pred CCcccCCCCCHHHHHHHHHHHHhhcCCCcceEEEecCCCCC-CCHH-HHHHHHHHHHHcCceeeEecCCCcH
Q 019222 99 DGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS-VSIE-DTMGELKKLVEEGKIKYIGLSEASA 168 (344)
Q Consensus 99 ~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~-~~~~-e~~~~L~~l~~~G~ir~iGvS~~~~ 168 (344)
+.+.|.++++-..++- .-++.++|....- .+.+ --++.|..|++.=- --||.|.|+.
T Consensus 124 ---------tl~EI~~Av~~~~~~~---~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~ 182 (241)
T PF03102_consen 124 ---------TLEEIERAVEVLREAG---NEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG-VPVGYSDHTD 182 (241)
T ss_dssp ----------HHHHHHHHHHHHHHC---T--EEEEEE-SSSS--GGG--TTHHHHHHHHST-SEEEEEE-SS
T ss_pred ---------CHHHHHHHHHHHHhcC---CCCEEEEecCCCCCCChHHcChHHHHHHHHhcC-CCEEeCCCCC
Confidence 5677777777664443 4588999976432 2333 23666777775433 4679998874
No 113
>PRK05660 HemN family oxidoreductase; Provisional
Probab=44.74 E-value=1.8e+02 Score=27.62 Aligned_cols=60 Identities=13% Similarity=0.010 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHHhhcCCCcceEEEec-CCCCC--------CCHHHHHH----HHHHHHHcCceeeEecCCCcH
Q 019222 107 GSPEYVRKCCEASLKRLDVDYIDLYYQH-RVDTS--------VSIEDTMG----ELKKLVEEGKIKYIGLSEASA 168 (344)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~d~iDl~~lH-~~~~~--------~~~~e~~~----~L~~l~~~G~ir~iGvS~~~~ 168 (344)
.+.+.+.+.++..++ ++.++|.+|.+- .|... .+.++.++ +.+.|.+.|-. .+++|||..
T Consensus 171 qt~~~~~~~l~~~~~-l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~-~yei~~fa~ 243 (378)
T PRK05660 171 QSLEEALDDLRQAIA-LNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGYQ-QYETSAYAK 243 (378)
T ss_pred CCHHHHHHHHHHHHh-cCCCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHHcCCc-EeecccccC
Confidence 377888888877655 899999998663 22210 11222232 33456666764 478888863
No 114
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=44.67 E-value=2.5e+02 Score=26.29 Aligned_cols=104 Identities=20% Similarity=0.243 Sum_probs=57.8
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCcceEEEec---------CCCCCCCHHHHHHHHHHHHHcCceeeEecC---CCcHHHH
Q 019222 104 GVKGSPEYVRKCCEASLKRLDVDYIDLYYQH---------RVDTSVSIEDTMGELKKLVEEGKIKYIGLS---EASADTI 171 (344)
Q Consensus 104 ~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH---------~~~~~~~~~e~~~~L~~l~~~G~ir~iGvS---~~~~~~l 171 (344)
.+.++.+.+.+-++. |.+.|+++|.+-..- .+ +..+..+.++.+.+.+ ...+...+. ....+.+
T Consensus 19 ~~~f~~~~~~~i~~~-L~~aGv~~IEvg~~~g~g~~s~~~g~-~~~~~~e~i~~~~~~~--~~~~~~~ll~pg~~~~~dl 94 (337)
T PRK08195 19 RHQYTLEQVRAIARA-LDAAGVPVIEVTHGDGLGGSSFNYGF-GAHTDEEYIEAAAEVV--KQAKIAALLLPGIGTVDDL 94 (337)
T ss_pred CCccCHHHHHHHHHH-HHHcCCCEEEeecCCCCCCccccCCC-CCCCHHHHHHHHHHhC--CCCEEEEEeccCcccHHHH
Confidence 346677776655554 999999999985321 11 1122334444443332 234444332 2245677
Q ss_pred HHHhhcCCceEEeeeccccccccccchHHHHHHhCCcEEEc
Q 019222 172 RRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAY 212 (344)
Q Consensus 172 ~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~ 212 (344)
+.+.+. .++.+.+..+.-+.+.-...+++++++|..+...
T Consensus 95 ~~a~~~-gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~ 134 (337)
T PRK08195 95 KMAYDA-GVRVVRVATHCTEADVSEQHIGLARELGMDTVGF 134 (337)
T ss_pred HHHHHc-CCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEE
Confidence 666653 4555554443322222356889999999877664
No 115
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=44.54 E-value=3.3e+02 Score=27.10 Aligned_cols=100 Identities=10% Similarity=0.109 Sum_probs=56.0
Q ss_pred HHHHHHHhccC----CCCcEEEEeccCcccCCCcccCCCCCHHHHHHHHHHHHhhcCCCcceEEEecCCCCCCCH----H
Q 019222 72 EIMVGKALKQL----PRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSI----E 143 (344)
Q Consensus 72 E~~lG~~l~~~----~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~----~ 143 (344)
++.|-++|++. +.+-++|.+-+ .++-|-..++...+.++.+.++++.++.|.-.... +
T Consensus 70 ~~~L~~aI~~~~~~~~P~~I~V~sTC--------------~selIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~~~g~~ 135 (511)
T TIGR01278 70 QTRLVDTVRRVDDRFKPDLIVVTPSC--------------TSSLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKENQAAD 135 (511)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCC--------------hHHHhccCHHHHHHHhccCCCcEEEecCCCcccchhHHHH
Confidence 66666666543 33334555543 23334444555555566556889999988654332 2
Q ss_pred HHHHHHHH-H----------HHcCceeeEecCCC------cHHHHHHHhhcCCceEEee
Q 019222 144 DTMGELKK-L----------VEEGKIKYIGLSEA------SADTIRRAHAVHPITAVQM 185 (344)
Q Consensus 144 e~~~~L~~-l----------~~~G~ir~iGvS~~------~~~~l~~~~~~~~~~~~q~ 185 (344)
.+++.+-+ + .+.+.|--||.++. +..+++++++...+.++.+
T Consensus 136 ~al~~lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~v 194 (511)
T TIGR01278 136 RTLTQLVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNVV 194 (511)
T ss_pred HHHHHHHHHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEEE
Confidence 23222221 1 13456888898762 4466777777766666543
No 116
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=44.32 E-value=1.2e+02 Score=27.30 Aligned_cols=66 Identities=18% Similarity=0.210 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHHHhhcCC--------------------------CcceEEEecCCCCCCCH---HHHHHHHHHHHHcCc
Q 019222 107 GSPEYVRKCCEASLKRLDV--------------------------DYIDLYYQHRVDTSVSI---EDTMGELKKLVEEGK 157 (344)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~--------------------------d~iDl~~lH~~~~~~~~---~e~~~~L~~l~~~G~ 157 (344)
.+++. ++.++++|+++|. ...|+++|..|....|. .++++-|.+|+++|+
T Consensus 112 ~~~~d-~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~ 190 (254)
T COG1121 112 LNKKD-KEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK 190 (254)
T ss_pred ccHHH-HHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence 34444 7788888888886 34588888888777665 478999999999987
Q ss_pred eeeEecCCCcHHHHHHHh
Q 019222 158 IKYIGLSEASADTIRRAH 175 (344)
Q Consensus 158 ir~iGvS~~~~~~l~~~~ 175 (344)
.|=+.+|+...+.+..
T Consensus 191 --tIl~vtHDL~~v~~~~ 206 (254)
T COG1121 191 --TVLMVTHDLGLVMAYF 206 (254)
T ss_pred --EEEEEeCCcHHhHhhC
Confidence 5666777776665543
No 117
>PRK06424 transcription factor; Provisional
Probab=44.27 E-value=68 Score=26.07 Aligned_cols=82 Identities=10% Similarity=0.090 Sum_probs=41.5
Q ss_pred ccchHHHHHHhCCcEEEc---ccCccc--ccCCCCC--CCCCCchhhhhcCCCCCchhhHHHHHHHHHHHHHHHHhCCCH
Q 019222 195 EDDIIPLCRELGIGIVAY---SPLGRG--FFAGKAV--VESLPSESILAMHPRFSGENLEKNKLLYTRLETLAAKYGCTT 267 (344)
Q Consensus 195 ~~~l~~~~~~~gi~v~a~---spl~~G--~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~s~ 267 (344)
+..+-+-|.+.|..|..+ +|...- .-..... ........ ......+.....+......+.|+.+.++.|+|.
T Consensus 22 ~l~vC~~Ca~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~g~~Ir~lRe~~GLSQ 100 (144)
T PRK06424 22 ILNVCDDCAKFGTPVIEHNKFKEVKEDIKVKLPEKKIIVPTYKKAY-KKYKKKASDEDLDIVEDYAELVKNARERLSMSQ 100 (144)
T ss_pred eeehhHHHHHcCCcccccCCCCcccccccccCccccccccccccCC-CCccCcccHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 356889999999999998 555321 0000000 00000000 000011111112223344566777788889999
Q ss_pred HHHHHHHHHh
Q 019222 268 PQLALAWLLH 277 (344)
Q Consensus 268 ~q~al~w~l~ 277 (344)
.++|-+--++
T Consensus 101 ~eLA~~iGvs 110 (144)
T PRK06424 101 ADLAAKIFER 110 (144)
T ss_pred HHHHHHhCCC
Confidence 9988665443
No 118
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=44.27 E-value=2.7e+02 Score=26.01 Aligned_cols=105 Identities=18% Similarity=0.242 Sum_probs=56.4
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCcceEEEe--------c-CCCCCCCHHHHHHHHHHHHHcCceeeEecC-CCcHHHHHHH
Q 019222 105 VKGSPEYVRKCCEASLKRLDVDYIDLYYQ--------H-RVDTSVSIEDTMGELKKLVEEGKIKYIGLS-EASADTIRRA 174 (344)
Q Consensus 105 ~~~~~~~i~~~~~~sL~~L~~d~iDl~~l--------H-~~~~~~~~~e~~~~L~~l~~~G~ir~iGvS-~~~~~~l~~~ 174 (344)
+.++.+.+.+-+ +.|.+.|+++|.+-.. . .+... +..+.++.+.+..+.-++..+-+. ....+.++.+
T Consensus 19 ~~f~~~~~~~ia-~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~-~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a 96 (333)
T TIGR03217 19 HQFTIEQVRAIA-AALDEAGVDAIEVTHGDGLGGSSFNYGFSAH-TDLEYIEAAADVVKRAKVAVLLLPGIGTVHDLKAA 96 (333)
T ss_pred CcCCHHHHHHHH-HHHHHcCCCEEEEecCCCCCCccccCCCCCC-ChHHHHHHHHHhCCCCEEEEEeccCccCHHHHHHH
Confidence 456777665544 4589999999998521 1 12222 222333333333333333322222 1246677776
Q ss_pred hhcCCceEEeeeccccccccccchHHHHHHhCCcEEEc
Q 019222 175 HAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAY 212 (344)
Q Consensus 175 ~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~ 212 (344)
.+. .++.+.+-.+.-+-+.-.+.+++++++|..+...
T Consensus 97 ~~~-gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~ 133 (333)
T TIGR03217 97 YDA-GARTVRVATHCTEADVSEQHIGMARELGMDTVGF 133 (333)
T ss_pred HHC-CCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEE
Confidence 654 4555555444322222356889999999876543
No 119
>PRK00077 eno enolase; Provisional
Probab=44.00 E-value=2.3e+02 Score=27.55 Aligned_cols=96 Identities=11% Similarity=0.071 Sum_probs=64.7
Q ss_pred CCHHHHHHHHHHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcC--ceeeEecCC--CcHHHHHHHhhcCCceE
Q 019222 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG--KIKYIGLSE--ASADTIRRAHAVHPITA 182 (344)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G--~ir~iGvS~--~~~~~l~~~~~~~~~~~ 182 (344)
.+++...+.+.+.++++ +++++-.|-+..+ |+.+.+|.+.- ++.-+|=-. .+++.+.++++....++
T Consensus 261 ~s~~e~~~~~~~l~e~y-----~i~~iEdPl~~~D----~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~~a~d~ 331 (425)
T PRK00077 261 LTSEEMIDYLAELVDKY-----PIVSIEDGLDEND----WEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEKGAANS 331 (425)
T ss_pred CCHHHHHHHHHHHHhhC-----CcEEEEcCCCCcc----HHHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHhCCCCE
Confidence 46666666666666554 5788888865543 55666666653 455433332 36899999988888888
Q ss_pred Eeeeccccccc-cccchHHHHHHhCCcEEE
Q 019222 183 VQMEYSLWTRE-IEDDIIPLCRELGIGIVA 211 (344)
Q Consensus 183 ~q~~~n~~~~~-~~~~l~~~~~~~gi~v~a 211 (344)
+|+..+-.-.- ...++..+|+.+|+.++.
T Consensus 332 v~ik~~~~GGitea~~ia~lA~~~gi~~~v 361 (425)
T PRK00077 332 ILIKVNQIGTLTETLDAIELAKRAGYTAVV 361 (425)
T ss_pred EEeCccccCCHHHHHHHHHHHHHcCCeEEE
Confidence 99887764321 125789999999998664
No 120
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=43.84 E-value=1.9e+02 Score=25.11 Aligned_cols=74 Identities=14% Similarity=0.114 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCccCcCCCChHH---HHHHHHhccCCCCcEEEEeccCcccCCCcccCCCCCHHHHHHHH
Q 019222 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNE---IMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCC 116 (344)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE---~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~ 116 (344)
+.++.....+.+.+.|..|+=|+.-|+.+|-+. +.+-+.++. + +-.|..... + +.+...+-+
T Consensus 130 ~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~~----~--v~IKaaGGi--------r-t~~~a~~~i 194 (211)
T TIGR00126 130 TDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTVGD----T--IGVKASGGV--------R-TAEDAIAMI 194 (211)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhcc----C--CeEEEeCCC--------C-CHHHHHHHH
Confidence 557778999999999999999998887424332 334444432 2 333432111 1 778888888
Q ss_pred HHHHhhcCCCcc
Q 019222 117 EASLKRLDVDYI 128 (344)
Q Consensus 117 ~~sL~~L~~d~i 128 (344)
+.--.|+|++..
T Consensus 195 ~aGa~riGts~~ 206 (211)
T TIGR00126 195 EAGASRIGASAG 206 (211)
T ss_pred HHhhHHhCcchH
Confidence 888899998753
No 121
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=43.78 E-value=41 Score=31.82 Aligned_cols=211 Identities=20% Similarity=0.131 Sum_probs=96.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCccCcCCCChHHH---HHHHHhccCCCCcEEEEeccCcccCCCcccCCCCCHHHHHHHH
Q 019222 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEI---MVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCC 116 (344)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~---~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~ 116 (344)
+.++..+.|+.|.++|++.+=|+=+... +..+. .+.+.++......+.|..=+.+..-. .-..+.+. +
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe-~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~~l~----~lg~~~~d----l 82 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPE-DDPEDYLERLKELLKLAKELGMEVIADISPKVLK----KLGISYDD----L 82 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE----------HHHHHHHHHHHHHHCT-EEEEEE-CCHHH----TTT-BTTB----T
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCC-CCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHH----HcCCCHHH----H
Confidence 5788899999999999999999976643 21122 22222222133344444443322100 00011111 1
Q ss_pred HHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCceeeEecCCCcHHHHHHHhhcC-CceEEeeeccccccccc
Q 019222 117 EASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVH-PITAVQMEYSLWTREIE 195 (344)
Q Consensus 117 ~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~-~~~~~q~~~n~~~~~~~ 195 (344)
..++.||++.+=+ |...+.++ +.+|-+.|.--.+=.|+.+.+.+..+++.. .++-+..-.|.+.+...
T Consensus 83 -~~~~~lGi~~lRl------D~Gf~~~~----ia~ls~ng~~I~LNASti~~~~l~~L~~~~~~~~~i~a~HNfYPr~~T 151 (357)
T PF05913_consen 83 -SFFKELGIDGLRL------DYGFSGEE----IAKLSKNGIKIELNASTITEEELDELIKYGANFSNIIACHNFYPRPYT 151 (357)
T ss_dssp -HHHHHHT-SEEEE------SSS-SCHH----HHHHTTT-SEEEEETTT--CCHHHHHCCTT--GGGEEEE---B-STT-
T ss_pred -HHHHHcCCCEEEE------CCCCCHHH----HHHHHhCCCEEEEECCCCChHHHHHHHHhcCCHHHeEEEecccCCCCC
Confidence 1345566544322 33333232 334444477777888888888888887764 35545555565555321
Q ss_pred -------cchHHHHHHhCCcEEEcccCcccccCCCCCCCCCCchhhhhcCCCCCchhhHHHHHHHHHHHHHHHHhCCCHH
Q 019222 196 -------DDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAMHPRFSGENLEKNKLLYTRLETLAAKYGCTTP 268 (344)
Q Consensus 196 -------~~l~~~~~~~gi~v~a~spl~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~s~~ 268 (344)
.+.-.+.++.|+.+.|+-|--. ...|. ..+.+|. .++|---+.
T Consensus 152 GLs~~~f~~~n~~~k~~gi~~~AFI~g~~-~~rGP-l~~GLPT----------------------------lE~hR~~~p 201 (357)
T PF05913_consen 152 GLSEEFFIEKNQLLKEYGIKTAAFIPGDE-NKRGP-LYEGLPT----------------------------LEKHRNLPP 201 (357)
T ss_dssp SB-HHHHHHHHHHHHHTT-EEEEEE--SS-S-BTT-T-S--BS----------------------------BGGGTTS-H
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEEecCCC-cccCC-ccCCCCc----------------------------cHHHcCCCH
Confidence 2345677899999999877542 12221 1111111 112333345
Q ss_pred HHHHHHHHhCCCCeEeccCCC--CHHHHHHhHcc
Q 019222 269 QLALAWLLHQGDDIVPIPGTT--KITNLDNNIGS 300 (344)
Q Consensus 269 q~al~w~l~~~~v~~~i~g~~--~~~~l~~nl~a 300 (344)
.+|...++..+.|.-|++|=. +.+.++.-...
T Consensus 202 ~~aa~~L~~~~~iD~V~IGD~~~s~~el~~~~~~ 235 (357)
T PF05913_consen 202 YAAALELFALGLIDDVIIGDPFASEEELKQLAQY 235 (357)
T ss_dssp HHHHHHHHHTTT--EEEE-SC---HHHHHHHHHC
T ss_pred HHHHHHHHhcCCCCEEEECCCcCCHHHHHHHHHH
Confidence 567777888887888888854 44445444433
No 122
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=43.58 E-value=2.3e+02 Score=27.02 Aligned_cols=147 Identities=10% Similarity=0.096 Sum_probs=86.0
Q ss_pred CHHHHHHHHHHHHHcCCC-EEeCccCcCCCChHHHHHHHHhccCCCCcEEEEeccCcccCC---CcccCCCCCHHHHHHH
Q 019222 40 SHEVGCSIIKETFNRGIT-LFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLD---GVSIGVKGSPEYVRKC 115 (344)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~-~~DtA~~Yg~~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~---~~~~~~~~~~~~i~~~ 115 (344)
+.++-.+-++.|.+.|.. .-|-+ ..|+ -..+-+++-+. .++=|-|= . .+.. ......+++.+.+...
T Consensus 76 ~i~~EveK~~~A~~~GADtvMDLS-tGgd----l~eiR~~ii~~--s~vPvGTV-P-IYqA~~~~~~~~~~~t~d~~~~~ 146 (432)
T COG0422 76 DIDEEVEKAVWAIKWGADTVMDLS-TGGD----LHEIREWIIRN--SPVPVGTV-P-IYQALEEVNGKVEDLTEDDFFDT 146 (432)
T ss_pred CHHHHHHHHHHHHHhCcceeEecc-cCCC----HHHHHHHHHhc--CCCCcCCc-h-HHHHHHHHhcchhhCCHHHHHHH
Confidence 556666777899999965 44555 3455 44555555321 11111110 0 0000 0011246788888888
Q ss_pred HHHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCceeeEecCCCcHHHHHHHhhcCCceEEeeeccccccccc
Q 019222 116 CEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTREIE 195 (344)
Q Consensus 116 ~~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~ 195 (344)
+++..+ +-+|.+.+|.- -.++.++.+++.|++ .|+-.-...-+...+-... .=|++...+
T Consensus 147 v~~qa~----~GVdfmTIHaG-------V~~~~~~~~~~~~R~--~giVSRGGsi~a~Wml~~~------~ENply~~f- 206 (432)
T COG0422 147 VEKQAE----QGVDFMTIHAG-------VLLEYVPRTKRSGRV--TGIVSRGGSIMAAWMLHNH------KENPLYEHF- 206 (432)
T ss_pred HHHHHH----hCCcEEEeehh-------hhHHHHHHHHhcCce--eeeeccchHHHHHHHHHcC------CcCchhhhH-
Confidence 877765 45677889963 257888899999985 5666655555554432211 224444443
Q ss_pred cchHHHHHHhCCcEEEcccCcccc
Q 019222 196 DDIIPLCRELGIGIVAYSPLGRGF 219 (344)
Q Consensus 196 ~~l~~~~~~~gi~v~a~spl~~G~ 219 (344)
.++++.|++++|.+ +|+.|+
T Consensus 207 d~lleI~k~yDvtl----SLGDgl 226 (432)
T COG0422 207 DELLEIFKEYDVTL----SLGDGL 226 (432)
T ss_pred HHHHHHHHHhCeee----eccCCC
Confidence 57999999999988 455544
No 123
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=43.45 E-value=40 Score=30.82 Aligned_cols=103 Identities=12% Similarity=0.069 Sum_probs=58.8
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCceeeEecCCCcHHHHHHHhhcCCceEEee
Q 019222 106 KGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQM 185 (344)
Q Consensus 106 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~ 185 (344)
.++.+...+ +-+.|.++|+++|.+-..+.|.......+.++.+..+.+...++...+. .....++.+.+. .++.+.+
T Consensus 22 ~~s~e~k~~-ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~-g~~~v~i 98 (287)
T PRK05692 22 FIPTADKIA-LIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAA-GADEVAV 98 (287)
T ss_pred CcCHHHHHH-HHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHc-CCCEEEE
Confidence 456665444 5555999999999997555453221222335555555544445655554 467778887765 2333333
Q ss_pred eccc--c------cccc------ccchHHHHHHhCCcEEE
Q 019222 186 EYSL--W------TREI------EDDIIPLCRELGIGIVA 211 (344)
Q Consensus 186 ~~n~--~------~~~~------~~~l~~~~~~~gi~v~a 211 (344)
-++. . .... -.+.+++++++|+.+.+
T Consensus 99 ~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~ 138 (287)
T PRK05692 99 FASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRG 138 (287)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 2222 1 0100 14688999999988764
No 124
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=43.43 E-value=1.4e+02 Score=27.50 Aligned_cols=73 Identities=12% Similarity=0.022 Sum_probs=49.4
Q ss_pred HHHHHHHHcCce-eeEecCCCcHHHHHHHhhcCCceEEeeeccccccc-cccchHHHHHHhCCcEEEcccCcccc
Q 019222 147 GELKKLVEEGKI-KYIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDDIIPLCRELGIGIVAYSPLGRGF 219 (344)
Q Consensus 147 ~~L~~l~~~G~i-r~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~l~~~~~~~gi~v~a~spl~~G~ 219 (344)
+.+..+.+.-.+ -+.|=|-++...+.++++....+++|+.....-.- .-..+.+.|+.+|+.++..+.+..|+
T Consensus 196 ~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~~~~d~i~ik~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~es~i 270 (307)
T TIGR01927 196 DEMSAFSEATGTAIALDESLWELPQLADEYGPGWRGALVIKPAIIGSPAKLRDLAQKAHRLGLQAVFSSVFESSI 270 (307)
T ss_pred HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhcCCCceEEECchhcCCHHHHHHHHHHHHHcCCCEEEECccchHH
Confidence 445555554322 24556667788888888777778888877754321 12678999999999999877666543
No 125
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=43.06 E-value=3.2e+02 Score=26.44 Aligned_cols=151 Identities=12% Similarity=0.072 Sum_probs=87.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCccCcCCCC-hHHHHHHHHhccCCCCcEEEEeccCcccCCCcccCCCCCHHHHHHHHHH
Q 019222 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDH-DNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEA 118 (344)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g-~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 118 (344)
+.++..+..+.+++.|++.|=.-- |.+. ...+.+ +++++.-.+++.|..=... .++.+.. .+
T Consensus 196 ~~~~~~~~a~~~~~~Gf~~~KiKv--g~~~~~d~~~v-~avRe~vG~~~~L~vDaN~----------~w~~~~A----~~ 258 (415)
T cd03324 196 SDEKLRRLCKEALAQGFTHFKLKV--GADLEDDIRRC-RLAREVIGPDNKLMIDANQ----------RWDVPEA----IE 258 (415)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeC--CCCHHHHHHHH-HHHHHhcCCCCeEEEECCC----------CCCHHHH----HH
Confidence 445566777777889999875321 1100 111222 2333322223333332221 1244432 23
Q ss_pred HHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcC----ceeeEecCCCcHHHHHHHhhcCCceEEeeeccccccc-
Q 019222 119 SLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG----KIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE- 193 (344)
Q Consensus 119 sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G----~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~- 193 (344)
.+++|. -.++.++-.|-+..+ ++.+.+|++.. .=-+.|=|.++...+.++++....+++|....-.---
T Consensus 259 ~~~~L~--~~~l~~iEEP~~~~d----~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~~a~dil~~d~~~~GGit 332 (415)
T cd03324 259 WVKQLA--EFKPWWIEEPTSPDD----ILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQAGAIDVVQIDSCRLGGVN 332 (415)
T ss_pred HHHHhh--ccCCCEEECCCCCCc----HHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHcCCCCEEEeCccccCCHH
Confidence 333442 336677877755433 55666676653 3335566778888999998888889999887754321
Q ss_pred cccchHHHHHHhCCcEEEcc
Q 019222 194 IEDDIIPLCRELGIGIVAYS 213 (344)
Q Consensus 194 ~~~~l~~~~~~~gi~v~a~s 213 (344)
....+..+|+.+|+.+..++
T Consensus 333 ~~~kia~lA~a~gi~~~pH~ 352 (415)
T cd03324 333 ENLAVLLMAAKFGVPVCPHA 352 (415)
T ss_pred HHHHHHHHHHHcCCeEEEcC
Confidence 12578999999999998764
No 126
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=42.37 E-value=2.3e+02 Score=26.64 Aligned_cols=93 Identities=13% Similarity=0.106 Sum_probs=60.4
Q ss_pred CCcEEEEeccCcccCC------CcccCCCCCHHHHHHHHHHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHc-C
Q 019222 84 RDKIQLATKFGCFMLD------GVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEE-G 156 (344)
Q Consensus 84 R~~~~I~tK~~~~~~~------~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~-G 156 (344)
|.-+.|+|-+|..-.- ......+.+...|..++-..-+.++....-++++---.|...++.++++++.+++. |
T Consensus 104 ~~t~CvSsQvGC~m~C~FC~tg~~g~~rnlta~EI~~qv~~~~~~~~~~~~niVFmGmGEPL~N~d~V~~~~~~l~~~~~ 183 (342)
T PRK14465 104 RKTICISSQIGCTLNCKFCATAKLEFQGNLKAHEIVDQVLQVEKIVGDRATNVVFMGMGEPMHNYFNVIRAASILHDPDA 183 (342)
T ss_pred ceEEEEEecCCCCCCCCCCcCCCCCccCCCCHHHHHHHHHHHHHhcCCCceEEEEEcCCcchhhHHHHHHHHHHHhChhh
Confidence 4568888888765331 12233567889999888776666665555566665455655667889999888775 2
Q ss_pred ---ceeeEecCCCcH-HHHHHHhh
Q 019222 157 ---KIKYIGLSEASA-DTIRRAHA 176 (344)
Q Consensus 157 ---~ir~iGvS~~~~-~~l~~~~~ 176 (344)
.-|.|-||+-.. ..+.++..
T Consensus 184 ~~~~~r~itvST~G~~~~i~~l~~ 207 (342)
T PRK14465 184 FNLGAKRITISTSGVVNGIRRFIE 207 (342)
T ss_pred hcCCCCeEEEeCCCchHHHHHHHh
Confidence 356788887643 45555543
No 127
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=41.97 E-value=1.9e+02 Score=27.29 Aligned_cols=27 Identities=26% Similarity=0.255 Sum_probs=21.3
Q ss_pred CCHHHHHHHHHHHHhhcCCCcceEEEec
Q 019222 107 GSPEYVRKCCEASLKRLDVDYIDLYYQH 134 (344)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~d~iDl~~lH 134 (344)
-+.+.+++.++..+ +++.+++.+|.+.
T Consensus 172 qt~~~~~~tl~~~~-~l~~~~i~~y~l~ 198 (375)
T PRK05628 172 ESDDDWRASLDAAL-EAGVDHVSAYALI 198 (375)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEeeeee
Confidence 47888888887654 5999999998776
No 128
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=41.42 E-value=2.9e+02 Score=25.57 Aligned_cols=103 Identities=13% Similarity=0.038 Sum_probs=55.3
Q ss_pred CHHHHHHHHHHHHHc-CCCEEeCccCcCCCC-hHHHHHHHHh---ccC-CCCcEEEEeccCcccCCCcccCCCCCHHHHH
Q 019222 40 SHEVGCSIIKETFNR-GITLFDTSDVYGVDH-DNEIMVGKAL---KQL-PRDKIQLATKFGCFMLDGVSIGVKGSPEYVR 113 (344)
Q Consensus 40 ~~~~~~~~l~~A~~~-Gi~~~DtA~~Yg~~g-~sE~~lG~~l---~~~-~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~ 113 (344)
+.++..++++...+. ||+-+--+- |++- .+...+-+.+ ++. ....+-|.|+.... .+..+.
T Consensus 120 ~~~e~~~~i~~i~~~~~I~~VilSG--GDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~-----------~p~rit 186 (321)
T TIGR03822 120 SPAELDAAFAYIADHPEIWEVILTG--GDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVA-----------DPARVT 186 (321)
T ss_pred CHHHHHHHHHHHHhCCCccEEEEeC--CCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCccc-----------ChhhcC
Confidence 556777788776644 887552110 2100 1122233333 222 23345677765422 223334
Q ss_pred HHHHHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCc
Q 019222 114 KCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGK 157 (344)
Q Consensus 114 ~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ 157 (344)
..+-+.|++.|. . ..+-+|...+..-.++++++++.|++.|.
T Consensus 187 ~ell~~L~~~g~-~-v~i~l~~~h~~el~~~~~~ai~~L~~~Gi 228 (321)
T TIGR03822 187 PALIAALKTSGK-T-VYVALHANHARELTAEARAACARLIDAGI 228 (321)
T ss_pred HHHHHHHHHcCC-c-EEEEecCCChhhcCHHHHHHHHHHHHcCC
Confidence 444456666663 2 35677875444445788999999999985
No 129
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=41.30 E-value=1.9e+02 Score=25.99 Aligned_cols=79 Identities=11% Similarity=0.026 Sum_probs=52.3
Q ss_pred CHH-HHHHHHHHHHHcCCCEEeCccCcCCCChHH---HHHHHHhccC-CCCcEEEEeccCcccCCCcccCCCCCHHHHHH
Q 019222 40 SHE-VGCSIIKETFNRGITLFDTSDVYGVDHDNE---IMVGKALKQL-PRDKIQLATKFGCFMLDGVSIGVKGSPEYVRK 114 (344)
Q Consensus 40 ~~~-~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE---~~lG~~l~~~-~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~ 114 (344)
+.+ +...+.+.|.+.|..|+=|+.-|+.+|.+. +++-+.+++. ...+ |--|.... -.+.+....
T Consensus 144 ~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~~~~~~--vgIKAsGG---------Irt~~~A~~ 212 (257)
T PRK05283 144 KDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDMGVAKT--VGFKPAGG---------VRTAEDAAQ 212 (257)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhcccCCC--eeEEccCC---------CCCHHHHHH
Confidence 344 478899999999999999999997534333 3344444321 1122 33343211 127788888
Q ss_pred HHHHHHhhcCCCcce
Q 019222 115 CCEASLKRLDVDYID 129 (344)
Q Consensus 115 ~~~~sL~~L~~d~iD 129 (344)
-++.--+.||.++++
T Consensus 213 ~i~ag~~~lg~~~~~ 227 (257)
T PRK05283 213 YLALADEILGADWAD 227 (257)
T ss_pred HHHHHHHHhChhhcC
Confidence 899999999988876
No 130
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=41.20 E-value=3.3e+02 Score=26.08 Aligned_cols=104 Identities=16% Similarity=0.180 Sum_probs=60.9
Q ss_pred HHHHHHHHHHH-----------hhcCCCcceEEEecCCCCC-----CCHHHHHHHHHHHHHcCcee-eEecC---CCcHH
Q 019222 110 EYVRKCCEASL-----------KRLDVDYIDLYYQHRVDTS-----VSIEDTMGELKKLVEEGKIK-YIGLS---EASAD 169 (344)
Q Consensus 110 ~~i~~~~~~sL-----------~~L~~d~iDl~~lH~~~~~-----~~~~e~~~~L~~l~~~G~ir-~iGvS---~~~~~ 169 (344)
+.+++.+++.. +.++ +|++.||.-..+ .+.++..+..++..+.=.+= -|+=| ..+++
T Consensus 128 ~~i~~~~~dV~~dP~~wak~~V~~~~---aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~e 204 (389)
T TIGR00381 128 KPIRMHFEDVMEDPAEWARKCVKEFG---ADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPL 204 (389)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhC---CCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHH
Confidence 55666666655 5555 577777754322 34556777777764433222 22222 45788
Q ss_pred HHHHHhhcCCc-eEEeeeccccccccccchHHHHHHhCCcEEEcccCccc
Q 019222 170 TIRRAHAVHPI-TAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRG 218 (344)
Q Consensus 170 ~l~~~~~~~~~-~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G 218 (344)
.++.+++...= .++-..-|.=+ -...+.+.|+++|..+++++|..-|
T Consensus 205 VLeaaLe~~~G~kpLL~SAt~e~--Ny~~ia~lAk~yg~~Vvv~s~~Din 252 (389)
T TIGR00381 205 VLEKAAEVAEGERCLLASANLDL--DYEKIANAAKKYGHVVLSWTIMDIN 252 (389)
T ss_pred HHHHHHHHhCCCCcEEEecCchh--hHHHHHHHHHHhCCeEEEEcCCcHH
Confidence 88887765321 12222222210 1257999999999999999987654
No 131
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=40.76 E-value=2.7e+02 Score=27.08 Aligned_cols=96 Identities=10% Similarity=0.084 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcC--ceeeEecCC-C-cHHHHHHHhhcCCceE
Q 019222 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG--KIKYIGLSE-A-SADTIRRAHAVHPITA 182 (344)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G--~ir~iGvS~-~-~~~~l~~~~~~~~~~~ 182 (344)
++++...+-+++.++++ +++++-.|-+..+ |+.+.+|.+.- .+.-+|=-. . +.+.++++++....++
T Consensus 262 ~s~~eai~~~~~lle~~-----~i~~iEdPl~~~D----~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~~a~d~ 332 (425)
T TIGR01060 262 LTSEEMIEYYKELVEKY-----PIVSIEDGLSEED----WEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEMGVANS 332 (425)
T ss_pred cCHHHHHHHHHHHHhcC-----CcEEEEcCCCccc----HHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHhCCCCE
Confidence 35555555554444443 6778888765433 56666666654 454333332 2 5889999988888888
Q ss_pred Eeeeccccccc-cccchHHHHHHhCCcEEE
Q 019222 183 VQMEYSLWTRE-IEDDIIPLCRELGIGIVA 211 (344)
Q Consensus 183 ~q~~~n~~~~~-~~~~l~~~~~~~gi~v~a 211 (344)
+|+..+-.-.- ...++..+|+.+|+.++.
T Consensus 333 v~ik~~~iGGItea~~ia~lA~~~Gi~~vv 362 (425)
T TIGR01060 333 ILIKPNQIGTLTETLDAVELAKKAGYTAVI 362 (425)
T ss_pred EEecccccCCHHHHHHHHHHHHHcCCcEEE
Confidence 88887754321 125788999999998554
No 132
>COG1801 Uncharacterized conserved protein [Function unknown]
Probab=40.57 E-value=2.8e+02 Score=25.04 Aligned_cols=81 Identities=7% Similarity=0.016 Sum_probs=50.9
Q ss_pred HHHHcCCCEEeCcc-CcCCCChHHHHHHHHhccCCCCcEEEEeccCcccCCCcccCCCCCH---HHHHHHHHHHHhhcCC
Q 019222 50 ETFNRGITLFDTSD-VYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSP---EYVRKCCEASLKRLDV 125 (344)
Q Consensus 50 ~A~~~Gi~~~DtA~-~Yg~~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~---~~i~~~~~~sL~~L~~ 125 (344)
..+...+|.+..-. .|.. .+++.+-+|.++ ..+++.-+.|+....... .... ..+.+.+.+-++.||
T Consensus 31 ~~y~~~f~~VEiN~TFYa~--p~~~t~~~W~~~-~p~~FrFsvK~~~~iTH~-----~~l~~~~~~~~~~~~~~~~~L~- 101 (263)
T COG1801 31 AYYASHFNTVEINSTFYAP--PSPETVLRWAEE-TPDDFRFSVKAPRAITHQ-----RRLKECDFELWEFFLEPLAPLG- 101 (263)
T ss_pred HHHhccCCEEEECCcccCC--CCHHHHHHHHHh-CCCCeEEEEEecccccch-----hhhccchHHHHHHHHHHHHhhh-
Confidence 34455577776443 4553 357788888876 789999999986443211 1122 234444445555677
Q ss_pred CcceEEEecCCCCC
Q 019222 126 DYIDLYYQHRVDTS 139 (344)
Q Consensus 126 d~iDl~~lH~~~~~ 139 (344)
+.+..+++.-|..-
T Consensus 102 ~klg~il~Q~Ppsf 115 (263)
T COG1801 102 ERLGPILFQLPPSF 115 (263)
T ss_pred cccceEEEecCCcc
Confidence 68999999988654
No 133
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=40.53 E-value=3.2e+02 Score=25.73 Aligned_cols=106 Identities=12% Similarity=0.199 Sum_probs=65.6
Q ss_pred HHHHHHHHHhhcC-CCcceEEEecCCCCC-----------CCHHHHHHHHHH-HHHcCc---eeeEecC--CCcHHHHHH
Q 019222 112 VRKCCEASLKRLD-VDYIDLYYQHRVDTS-----------VSIEDTMGELKK-LVEEGK---IKYIGLS--EASADTIRR 173 (344)
Q Consensus 112 i~~~~~~sL~~L~-~d~iDl~~lH~~~~~-----------~~~~e~~~~L~~-l~~~G~---ir~iGvS--~~~~~~l~~ 173 (344)
+++-.+.-+++|+ .+....+-||.++++ .+++++++++.+ +.+.|+ ++++=|. |.+.+++++
T Consensus 196 i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~~ 275 (345)
T PRK14457 196 IPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAITGRRVSFEYILLGGVNDLPEHAEE 275 (345)
T ss_pred HHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHHHHH
Confidence 4444444444443 344577889988643 346788877766 556664 6666554 345555544
Q ss_pred H---hhcCCceEEeeeccccccc----cc----cchHHHHHHhCCcEEEcccCcc
Q 019222 174 A---HAVHPITAVQMEYSLWTRE----IE----DDIIPLCRELGIGIVAYSPLGR 217 (344)
Q Consensus 174 ~---~~~~~~~~~q~~~n~~~~~----~~----~~l~~~~~~~gi~v~a~spl~~ 217 (344)
+ +...+..++-++||++... +. ....+..+++|+.+......+.
T Consensus 276 La~~l~~l~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~~Gi~vtvR~~~G~ 330 (345)
T PRK14457 276 LANLLRGFQSHVNLIPYNPIDEVEFQRPSPKRIQAFQRVLEQRGVAVSVRASRGL 330 (345)
T ss_pred HHHHHhcCCCeEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCC
Confidence 4 4444567888999987532 11 2356667788999988777654
No 134
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=40.52 E-value=78 Score=28.85 Aligned_cols=44 Identities=18% Similarity=0.293 Sum_probs=36.7
Q ss_pred HHHHHHHHHhCC------CHHHHHHHHHHhCCCCeEeccCCCCHHHHHHhH
Q 019222 254 TRLETLAAKYGC------TTPQLALAWLLHQGDDIVPIPGTTKITNLDNNI 298 (344)
Q Consensus 254 ~~l~~la~~~g~------s~~q~al~w~l~~~~v~~~i~g~~~~~~l~~nl 298 (344)
.+|.++|+++|. ++.++=..|+-... .+.+-.|+|+|+-|-+++
T Consensus 228 ~rL~eiA~~~g~~aylId~~~ei~~~w~~~~~-~VGvTAGAStPd~lV~~V 277 (294)
T COG0761 228 NRLAEIAKRHGKPAYLIDDAEEIDPEWLKGVK-TVGVTAGASTPDWLVQEV 277 (294)
T ss_pred HHHHHHHHHhCCCeEEeCChHhCCHHHhcCcc-EEEEecCCCCCHHHHHHH
Confidence 489999999987 68888899998855 367889999999888775
No 135
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=40.11 E-value=1.3e+02 Score=26.04 Aligned_cols=89 Identities=17% Similarity=0.203 Sum_probs=54.0
Q ss_pred hhcCCCcceEEEec-CCCCC-CCHH----HHHHHHHHHHH--cCceeeEecCCCcHHHHHHHhhcCCceEEeeecccccc
Q 019222 121 KRLDVDYIDLYYQH-RVDTS-VSIE----DTMGELKKLVE--EGKIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTR 192 (344)
Q Consensus 121 ~~L~~d~iDl~~lH-~~~~~-~~~~----e~~~~L~~l~~--~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~ 192 (344)
..-|.|+||+---- +|... .+.+ .+...++.+++ .+. -+.|-++.++.++.+++. ..+++-.-.+. ..
T Consensus 29 ~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~--plSIDT~~~~v~~~aL~~-g~~~ind~~~~-~~ 104 (210)
T PF00809_consen 29 VEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDV--PLSIDTFNPEVAEAALKA-GADIINDISGF-ED 104 (210)
T ss_dssp HHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTS--EEEEEESSHHHHHHHHHH-TSSEEEETTTT-SS
T ss_pred HHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCe--EEEEECCCHHHHHHHHHc-CcceEEecccc-cc
Confidence 44588999984322 22211 2223 34555566664 233 477778999999998887 44433222222 11
Q ss_pred ccccchHHHHHHhCCcEEEcccC
Q 019222 193 EIEDDIIPLCRELGIGIVAYSPL 215 (344)
Q Consensus 193 ~~~~~l~~~~~~~gi~v~a~spl 215 (344)
..++++.++++|..++++..-
T Consensus 105 --~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 105 --DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp --STTHHHHHHHHTSEEEEESES
T ss_pred --cchhhhhhhcCCCEEEEEecc
Confidence 357999999999999987554
No 136
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=40.10 E-value=1.6e+02 Score=27.06 Aligned_cols=108 Identities=14% Similarity=0.106 Sum_probs=64.7
Q ss_pred CceeeEecCCCcHHHHHHHhhcC---CceEEeeecccccc---ccccchHHHHHHhCCcEEEcccCcccccCCCCCCCCC
Q 019222 156 GKIKYIGLSEASADTIRRAHAVH---PITAVQMEYSLWTR---EIEDDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESL 229 (344)
Q Consensus 156 G~ir~iGvS~~~~~~l~~~~~~~---~~~~~q~~~n~~~~---~~~~~l~~~~~~~gi~v~a~spl~~G~l~~~~~~~~~ 229 (344)
.++-.+--.+.+.+.+.++.+.. .+......+|-++. ..+..+.+++++.++-++.- |.=+.
T Consensus 156 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~RQ~a~~~La~~vD~miVVG-----g~~Ss------- 223 (298)
T PRK01045 156 DKLALVTQTTLSVDDTAEIIAALKERFPEIQGPPKDDICYATQNRQEAVKELAPQADLVIVVG-----SKNSS------- 223 (298)
T ss_pred CcEEEEEcCCCcHHHHHHHHHHHHHhCcCcccCCCCCcchhhHHHHHHHHHHHhhCCEEEEEC-----CCCCc-------
Confidence 55666666677777665544431 11111111232322 11356788888777666552 21111
Q ss_pred CchhhhhcCCCCCchhhHHHHHHHHHHHHHHHHhCC------CHHHHHHHHHHhCCCCeEeccCCCCHHHHHHhH
Q 019222 230 PSESILAMHPRFSGENLEKNKLLYTRLETLAAKYGC------TTPQLALAWLLHQGDDIVPIPGTTKITNLDNNI 298 (344)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~------s~~q~al~w~l~~~~v~~~i~g~~~~~~l~~nl 298 (344)
+. .+|.++|++++. ++.++-..|+.... .+.+..|+|+|+.+-+.+
T Consensus 224 ---------------NT-------~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~-~VGitaGASTP~~li~eV 275 (298)
T PRK01045 224 ---------------NS-------NRLREVAEEAGAPAYLIDDASEIDPEWFKGVK-TVGVTAGASAPEWLVQEV 275 (298)
T ss_pred ---------------cH-------HHHHHHHHHHCCCEEEECChHHCcHHHhcCCC-EEEEEecCCCCHHHHHHH
Confidence 11 478899998874 78999999996654 468889999999776554
No 137
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=40.00 E-value=2.1e+02 Score=27.01 Aligned_cols=92 Identities=12% Similarity=0.192 Sum_probs=58.8
Q ss_pred CCCcEEEEeccCcccCC----Cc--ccCCCCCHHHHHHHHHHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHH-c
Q 019222 83 PRDKIQLATKFGCFMLD----GV--SIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVE-E 155 (344)
Q Consensus 83 ~R~~~~I~tK~~~~~~~----~~--~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~-~ 155 (344)
.|.-+.|+|-.+....- .+ ......+.+.|..++....+..+++.| .++-.-++...++++.++++.+.+ .
T Consensus 101 ~~~t~cvSsq~GC~~~C~FC~tg~~~~~r~lt~~EI~~qv~~~~~~~~i~~I--vfmG~GEPl~n~~~vi~~l~~l~~~~ 178 (349)
T PRK14463 101 DRNTLCISSQVGCAMGCAFCLTGTFRLTRNLTTAEIVNQVCAVKRDVPVRNI--VFMGMGEPLANLDNVIPALQILTDPD 178 (349)
T ss_pred CCcEEEEEecCCcCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCccEE--EEecCCcchhcHHHHHHHHHHhhccc
Confidence 46778888877654331 11 123467899999999887766655544 444434455567889999999886 5
Q ss_pred Cc---eeeEecCCCc-HHHHHHHhh
Q 019222 156 GK---IKYIGLSEAS-ADTIRRAHA 176 (344)
Q Consensus 156 G~---ir~iGvS~~~-~~~l~~~~~ 176 (344)
|. .+.+.||+-. ...+.++..
T Consensus 179 gl~~s~r~itVsTnGl~~~i~~l~~ 203 (349)
T PRK14463 179 GLQFSTRKVTVSTSGLVPEMEELGR 203 (349)
T ss_pred ccCcCCceEEEECCCchHHHHHHhh
Confidence 65 4677777653 345555543
No 138
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=39.91 E-value=42 Score=32.48 Aligned_cols=108 Identities=14% Similarity=0.116 Sum_probs=69.5
Q ss_pred ChHHHHHHHHhccC---CCCcEEEEeccCcccCCCcccCCCCCHHHHHHHH--HHHHhhcCCCcceEEEecCCCCCCCHH
Q 019222 69 HDNEIMVGKALKQL---PRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCC--EASLKRLDVDYIDLYYQHRVDTSVSIE 143 (344)
Q Consensus 69 g~sE~~lG~~l~~~---~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~--~~sL~~L~~d~iDl~~lH~~~~~~~~~ 143 (344)
|.-|.++..+-+.. .+.++++++-+|.....++--......-.|.-.| .+.-.||.+.|+|. ...+++
T Consensus 148 GTyeT~~~~~r~h~~gdL~Gk~~lTaGLGGMgGAQplA~~ma~~v~i~vevd~srI~~Rl~t~y~d~-------~a~~ld 220 (561)
T COG2987 148 GTYETFAEAGRQHFGGDLKGKWVLTAGLGGMGGAQPLAATMAGAVCIAVEVDESRIDKRLRTGYLDE-------IAETLD 220 (561)
T ss_pred chHHHHHHHHHHhcCCCccceEEEecCCCcccccchHHHHhcCceEEEEEeCHHHHHHHHhcchhhh-------hcCCHH
Confidence 45666665554443 7788999998876654432100000000000111 22236788899985 234689
Q ss_pred HHHHHHHHHHHcCceeeEecCCCcHHHHHHHhhc-CCceEE
Q 019222 144 DTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV-HPITAV 183 (344)
Q Consensus 144 e~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~-~~~~~~ 183 (344)
|+++..++..++|+-.+||+-..-.+.+.++++. ..+|++
T Consensus 221 eAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~v 261 (561)
T COG2987 221 EALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLV 261 (561)
T ss_pred HHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCcee
Confidence 9999999999999999999999888888888776 344444
No 139
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=39.74 E-value=2.9e+02 Score=25.10 Aligned_cols=153 Identities=11% Similarity=0.064 Sum_probs=87.7
Q ss_pred CHHHHHHHHHHHHHcC-CCEEeC---ccC--c---CCCChHHHHHHHHhccC-CCCcEEEEeccCcccCCCcccCCCCCH
Q 019222 40 SHEVGCSIIKETFNRG-ITLFDT---SDV--Y---GVDHDNEIMVGKALKQL-PRDKIQLATKFGCFMLDGVSIGVKGSP 109 (344)
Q Consensus 40 ~~~~~~~~l~~A~~~G-i~~~Dt---A~~--Y---g~~g~sE~~lG~~l~~~-~R~~~~I~tK~~~~~~~~~~~~~~~~~ 109 (344)
+.++..+..+.+.+.| +..||- +++ + .. +...+.+-+.++.. ..-++-|..|+....
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~-~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~------------ 168 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAF-GTDPELAYEVVKAVKEVVKVPVIVKLTPNV------------ 168 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCcccc-ccCHHHHHHHHHHHHHhcCCCEEEEcCCCc------------
Confidence 5677778888888898 999975 111 1 11 22345555555542 112577888886431
Q ss_pred HHHHHHHHHHHhhcCCCcceEEE-ecCCC--CC----------------CCHHHHHHHHHHHHHcCceeeEecCCC-cHH
Q 019222 110 EYVRKCCEASLKRLDVDYIDLYY-QHRVD--TS----------------VSIEDTMGELKKLVEEGKIKYIGLSEA-SAD 169 (344)
Q Consensus 110 ~~i~~~~~~sL~~L~~d~iDl~~-lH~~~--~~----------------~~~~e~~~~L~~l~~~G~ir~iGvS~~-~~~ 169 (344)
+.+. .+-+.|+..|+|.|++.- ++... .. ....-.++.+.++++.=.+--||+... +++
T Consensus 169 ~~~~-~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~ 247 (301)
T PRK07259 169 TDIV-EIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAE 247 (301)
T ss_pred hhHH-HHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHH
Confidence 1222 334457788888887631 11110 00 000114666777777656788888875 788
Q ss_pred HHHHHhhcCCceEEeeeccccc-cc----cccchHHHHHHhCC
Q 019222 170 TIRRAHAVHPITAVQMEYSLWT-RE----IEDDIIPLCRELGI 207 (344)
Q Consensus 170 ~l~~~~~~~~~~~~q~~~n~~~-~~----~~~~l~~~~~~~gi 207 (344)
.+.+++.. ..+.+|+-=-++. +. ...++-.++.++|.
T Consensus 248 da~~~l~a-GAd~V~igr~ll~~P~~~~~i~~~l~~~~~~~g~ 289 (301)
T PRK07259 248 DAIEFIMA-GASAVQVGTANFYDPYAFPKIIEGLEAYLDKYGI 289 (301)
T ss_pred HHHHHHHc-CCCceeEcHHHhcCcHHHHHHHHHHHHHHHHcCC
Confidence 88888764 4677877444333 11 11456666666664
No 140
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=39.51 E-value=1.7e+02 Score=27.62 Aligned_cols=88 Identities=10% Similarity=0.191 Sum_probs=55.2
Q ss_pred EEEecCCCCC-----------CCHHHHHHHHHHHHH-cCc---eeeEecC--CCcHHHH---HHHhhcCCceEEeeeccc
Q 019222 130 LYYQHRVDTS-----------VSIEDTMGELKKLVE-EGK---IKYIGLS--EASADTI---RRAHAVHPITAVQMEYSL 189 (344)
Q Consensus 130 l~~lH~~~~~-----------~~~~e~~~~L~~l~~-~G~---ir~iGvS--~~~~~~l---~~~~~~~~~~~~q~~~n~ 189 (344)
.+-||.++++ .+++++++++.++.+ .|+ |+++=+. |.+.+++ .+++...++.++-++||.
T Consensus 218 aiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPynp 297 (355)
T TIGR00048 218 AISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNLIPWNP 297 (355)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEEEeccc
Confidence 3678988642 246888888887654 443 4454333 3344554 444444557788899998
Q ss_pred cccc----cc----cchHHHHHHhCCcEEEcccCcc
Q 019222 190 WTRE----IE----DDIIPLCRELGIGIVAYSPLGR 217 (344)
Q Consensus 190 ~~~~----~~----~~l~~~~~~~gi~v~a~spl~~ 217 (344)
+... +. ....++.+++|+.+......+.
T Consensus 298 ~~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~~~G~ 333 (355)
T TIGR00048 298 FPEADYERPSNEQIDRFAKTLMSYGFTVTIRKSRGD 333 (355)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 7532 11 2355667788999998877754
No 141
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=39.36 E-value=1.3e+02 Score=27.48 Aligned_cols=44 Identities=23% Similarity=0.263 Sum_probs=35.6
Q ss_pred HHHHHHHHHhCC------CHHHHHHHHHHhCCCCeEeccCCCCHHHHHHhH
Q 019222 254 TRLETLAAKYGC------TTPQLALAWLLHQGDDIVPIPGTTKITNLDNNI 298 (344)
Q Consensus 254 ~~l~~la~~~g~------s~~q~al~w~l~~~~v~~~i~g~~~~~~l~~nl 298 (344)
.+|.++|+++|. ++.++-..|.-.... +.+..|+|+|+.+-+.+
T Consensus 224 ~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~~-VGiTAGASTP~~li~eV 273 (280)
T TIGR00216 224 TRLYEIAEEHGPPSYLIETAEELPEEWLKGVKV-VGITAGASTPDWIIEEV 273 (280)
T ss_pred HHHHHHHHHhCCCEEEECChHHCCHHHhCCCCE-EEEEecCCCCHHHHHHH
Confidence 478899999874 789999999876653 68889999999876653
No 142
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=38.91 E-value=2.6e+02 Score=24.26 Aligned_cols=100 Identities=12% Similarity=0.107 Sum_probs=65.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCccCcCCCChHHHHHHHHhccCCCCcEEEEeccCcccCCCcccCCCCCHHHHHHHHHH
Q 019222 39 LSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEA 118 (344)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 118 (344)
.+.++..++++.|.+.|+.-+=..+.|= ....+.|+ ..++-|+|=++...+. .+.+.-...+++
T Consensus 15 ~t~~~i~~lc~~A~~~~~~avcv~p~~v------~~a~~~l~---~~~v~v~tVigFP~G~-------~~~~~K~~E~~~ 78 (211)
T TIGR00126 15 TTEEDIITLCAQAKTYKFAAVCVNPSYV------PLAKELLK---GTEVRICTVVGFPLGA-------STTDVKLYETKE 78 (211)
T ss_pred CCHHHHHHHHHHHHhhCCcEEEeCHHHH------HHHHHHcC---CCCCeEEEEeCCCCCC-------CcHHHHHHHHHH
Confidence 4788999999999999987776555442 34455554 2467788877765432 244444555565
Q ss_pred HHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHc
Q 019222 119 SLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEE 155 (344)
Q Consensus 119 sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~ 155 (344)
.++ +|.|-||+++-...-...+.+.+.+.+.+.++.
T Consensus 79 Av~-~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~ 114 (211)
T TIGR00126 79 AIK-YGADEVDMVINIGALKDGNEEVVYDDIRAVVEA 114 (211)
T ss_pred HHH-cCCCEEEeecchHhhhCCcHHHHHHHHHHHHHH
Confidence 554 799999998765443345566677777776653
No 143
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=38.62 E-value=1.9e+02 Score=27.33 Aligned_cols=59 Identities=12% Similarity=0.066 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHHHhhcCCCcceEEEec-CCCCC------------CCHH---H-HHHHHHHHHHcCceeeEecCCCc
Q 019222 107 GSPEYVRKCCEASLKRLDVDYIDLYYQH-RVDTS------------VSIE---D-TMGELKKLVEEGKIKYIGLSEAS 167 (344)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~d~iDl~~lH-~~~~~------------~~~~---e-~~~~L~~l~~~G~ir~iGvS~~~ 167 (344)
-+.+.+.+.++.. .+|+.+++.+|.+. .|... .+.+ + .-.+++.|.+.|- ..+++|+|.
T Consensus 164 qt~~~~~~~l~~~-~~l~~~~i~~y~l~~~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy-~~~~~~~fa 239 (377)
T PRK08599 164 QTIEDFKESLAKA-LALDIPHYSAYSLILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEMEAHGF-HQYEISNFA 239 (377)
T ss_pred CCHHHHHHHHHHH-HccCCCEEeeeceeecCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCC-cEeeeeeee
Confidence 3788888888764 66999999888653 22110 0111 1 2235566667775 457888875
No 144
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=38.28 E-value=2.8e+02 Score=26.31 Aligned_cols=86 Identities=12% Similarity=0.145 Sum_probs=55.9
Q ss_pred EecCCCCC-----------CCHHHHHHHHHHHH-HcCc---eeeEecCC--CcHHHHHHH---hhcCCceEEeeeccccc
Q 019222 132 YQHRVDTS-----------VSIEDTMGELKKLV-EEGK---IKYIGLSE--ASADTIRRA---HAVHPITAVQMEYSLWT 191 (344)
Q Consensus 132 ~lH~~~~~-----------~~~~e~~~~L~~l~-~~G~---ir~iGvS~--~~~~~l~~~---~~~~~~~~~q~~~n~~~ 191 (344)
-||.++++ .+++++++++.++. +.|+ |+|+=|.. .+.++++++ +...+..++-++||++.
T Consensus 225 SLha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPyn~~~ 304 (356)
T PRK14462 225 SLHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNGIKAKVNLILFNPHE 304 (356)
T ss_pred ECCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhhcCcEEEEEeCCCCC
Confidence 48988643 34577888887554 5555 66765553 355665544 34445688999999876
Q ss_pred cc----cc----cchHHHHHHhCCcEEEcccCcc
Q 019222 192 RE----IE----DDIIPLCRELGIGIVAYSPLGR 217 (344)
Q Consensus 192 ~~----~~----~~l~~~~~~~gi~v~a~spl~~ 217 (344)
.. +. ....+..+++||.+......+.
T Consensus 305 ~~~~~~ps~e~i~~f~~~l~~~gi~vtvR~~~G~ 338 (356)
T PRK14462 305 GSKFERPSLEDMIKFQDYLNSKGLLCTIRESKGL 338 (356)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 32 12 2345566788999988877764
No 145
>smart00642 Aamy Alpha-amylase domain.
Probab=38.19 E-value=31 Score=28.69 Aligned_cols=21 Identities=10% Similarity=0.290 Sum_probs=17.3
Q ss_pred cchHHHHHHhCCcEEEcccCc
Q 019222 196 DDIIPLCRELGIGIVAYSPLG 216 (344)
Q Consensus 196 ~~l~~~~~~~gi~v~a~spl~ 216 (344)
+.+++.|+++||.|+.=-++.
T Consensus 73 ~~lv~~~h~~Gi~vilD~V~N 93 (166)
T smart00642 73 KELVDAAHARGIKVILDVVIN 93 (166)
T ss_pred HHHHHHHHHCCCEEEEEECCC
Confidence 679999999999998755554
No 146
>PF01876 RNase_P_p30: RNase P subunit p30; InterPro: IPR002738 Members of this protein family are part of the ribonuclease P complex () that takes part in endonucleolytic cleavage of RNA, removing 5'-extra-nucleotide from tRNA precursor. This process is essential for tRNA processing.; GO: 0004540 ribonuclease activity, 0008033 tRNA processing; PDB: 1V77_A 2CZV_A.
Probab=38.08 E-value=61 Score=26.26 Aligned_cols=59 Identities=20% Similarity=0.259 Sum_probs=34.8
Q ss_pred eeeEecCCCcHHHHHHHhhcCCceEEeeecc-ccccccccchHHHHHHhCCcE-EEcccCc
Q 019222 158 IKYIGLSEASADTIRRAHAVHPITAVQMEYS-LWTREIEDDIIPLCRELGIGI-VAYSPLG 216 (344)
Q Consensus 158 ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n-~~~~~~~~~l~~~~~~~gi~v-~a~spl~ 216 (344)
..-|.|...+.+.+..++....+|++.+.+. -.........+..|.++|+.+ +.|+|+-
T Consensus 25 ~divav~p~~~~~~~~a~~~~~vDiIt~d~~~~~~~~~~~~~~~~a~~~gi~~EI~~~~~l 85 (150)
T PF01876_consen 25 YDIVAVRPGSEKAFRAACSDPRVDIITFDLTERLPFYIKRKQARLAIERGIFFEISYSPLL 85 (150)
T ss_dssp -SEEEEE-S-HHHHHHHHHTT--SEEE-TTTTSSS-S--HHHHHHHHHHT-EEEEESHHHH
T ss_pred ceEEEEEcCCHHHHHHHHhcCCCCEEEeCcccccccccCHHHHHHHHHCCEEEEEEehHhh
Confidence 4445555556677777787778888888774 122223457899999999998 5687765
No 147
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=37.85 E-value=2.4e+02 Score=26.95 Aligned_cols=89 Identities=9% Similarity=0.103 Sum_probs=59.6
Q ss_pred eEEEecCCCCC-----------CCHHHHHHHHHHHH-HcCc---eeeEecC--CCcHHH---HHHHhhcC---CceEEee
Q 019222 129 DLYYQHRVDTS-----------VSIEDTMGELKKLV-EEGK---IKYIGLS--EASADT---IRRAHAVH---PITAVQM 185 (344)
Q Consensus 129 Dl~~lH~~~~~-----------~~~~e~~~~L~~l~-~~G~---ir~iGvS--~~~~~~---l~~~~~~~---~~~~~q~ 185 (344)
=.+-||.++++ .+++++++++.+.. +.|+ |+|+=+. |.+.++ +.+++... +..++-+
T Consensus 240 LavSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLI 319 (373)
T PRK14459 240 LAVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLI 319 (373)
T ss_pred EEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEE
Confidence 34678998653 35788999988876 4465 5566554 334444 44445444 5688999
Q ss_pred eccccccc-cc-------cchHHHHHHhCCcEEEcccCcc
Q 019222 186 EYSLWTRE-IE-------DDIIPLCRELGIGIVAYSPLGR 217 (344)
Q Consensus 186 ~~n~~~~~-~~-------~~l~~~~~~~gi~v~a~spl~~ 217 (344)
+||+.... .. ....+..+++||.+......+.
T Consensus 320 pyNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G~ 359 (373)
T PRK14459 320 PLNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQ 359 (373)
T ss_pred ccCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCCc
Confidence 99997541 11 3467778899999998877764
No 148
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=37.82 E-value=1.6e+02 Score=31.70 Aligned_cols=71 Identities=13% Similarity=0.073 Sum_probs=56.4
Q ss_pred CCCHHHHHHHHHHHHhhcCC--------------------------CcceEEEecCCCCCCCH---HHHHHHHHHHHHcC
Q 019222 106 KGSPEYVRKCCEASLKRLDV--------------------------DYIDLYYQHRVDTSVSI---EDTMGELKKLVEEG 156 (344)
Q Consensus 106 ~~~~~~i~~~~~~sL~~L~~--------------------------d~iDl~~lH~~~~~~~~---~e~~~~L~~l~~~G 156 (344)
...+.++.+.++..|+.+++ ....+++|..|....|. ..+|+...++++.|
T Consensus 669 G~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g 748 (885)
T KOG0059|consen 669 GLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNG 748 (885)
T ss_pred CCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 44567888889999987774 23566788887766554 47999999999999
Q ss_pred ceeeEecCCCcHHHHHHHhhcC
Q 019222 157 KIKYIGLSEASADTIRRAHAVH 178 (344)
Q Consensus 157 ~ir~iGvS~~~~~~l~~~~~~~ 178 (344)
+ ++=+.+|+.++.+.++...
T Consensus 749 ~--aiiLTSHsMeE~EaLCtR~ 768 (885)
T KOG0059|consen 749 K--AIILTSHSMEEAEALCTRT 768 (885)
T ss_pred C--EEEEEcCCHHHHHHHhhhh
Confidence 9 8999999999998887653
No 149
>PRK15108 biotin synthase; Provisional
Probab=37.60 E-value=3.5e+02 Score=25.37 Aligned_cols=105 Identities=12% Similarity=0.133 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCccCcCCC-ChHHHHHHHHhccCCCCcEEEEeccCcccCCCcccCCCCCHHHHHHHHH
Q 019222 39 LSHEVGCSIIKETFNRGITLFDTSDVYGVD-HDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCE 117 (344)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~-g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 117 (344)
.+.++..+..+.+.+.|++.|-.....-++ ...-+.+-+.++..+...+.++.-.+. .+.+. -
T Consensus 76 ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~~~i~v~~s~G~-----------ls~e~-----l 139 (345)
T PRK15108 76 MEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLETCMTLGT-----------LSESQ-----A 139 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecCCCCCcchHHHHHHHHHHHHhCCCEEEEeCCc-----------CCHHH-----H
Confidence 577888888888889999988432221110 111244555554422122222222221 13322 2
Q ss_pred HHHhhcCCCcceEEEecCC------CCCCCHHHHHHHHHHHHHcCcee
Q 019222 118 ASLKRLDVDYIDLYYQHRV------DTSVSIEDTMGELKKLVEEGKIK 159 (344)
Q Consensus 118 ~sL~~L~~d~iDl~~lH~~------~~~~~~~e~~~~L~~l~~~G~ir 159 (344)
+-|+..|+|++.+.+==.| -.....++.++.++.+++.|.--
T Consensus 140 ~~LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v 187 (345)
T PRK15108 140 QRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKV 187 (345)
T ss_pred HHHHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCce
Confidence 3355667776543210011 11236788999999999999733
No 150
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=37.49 E-value=55 Score=26.14 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=19.3
Q ss_pred ccchHHHHHHhCCcEEEcccCc
Q 019222 195 EDDIIPLCRELGIGIVAYSPLG 216 (344)
Q Consensus 195 ~~~l~~~~~~~gi~v~a~spl~ 216 (344)
-.++++.|++.||.|++|-.+.
T Consensus 46 lge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 46 LGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred HHHHHHHHHHCCCEEEEEEeee
Confidence 3679999999999999987775
No 151
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=37.48 E-value=1.9e+02 Score=26.41 Aligned_cols=44 Identities=18% Similarity=0.121 Sum_probs=35.2
Q ss_pred HHHHHHHHHhCC------CHHHHHHHHHHhCCCCeEeccCCCCHHHHHHhH
Q 019222 254 TRLETLAAKYGC------TTPQLALAWLLHQGDDIVPIPGTTKITNLDNNI 298 (344)
Q Consensus 254 ~~l~~la~~~g~------s~~q~al~w~l~~~~v~~~i~g~~~~~~l~~nl 298 (344)
.+|.++|++.+. ++.++-..|+.... .+.+..|+|+|+.+-+.+
T Consensus 225 ~rL~eia~~~~~~t~~Ie~~~el~~~~~~~~~-~VGitaGASTP~~li~eV 274 (281)
T PRK12360 225 QKLVKICEKNCPNTFHIETADELDLEMLKDYK-IIGITAGASTPDWIIEEV 274 (281)
T ss_pred HHHHHHHHHHCCCEEEECChHHCCHHHhCCCC-EEEEEccCCCCHHHHHHH
Confidence 478899998874 68888889998764 367889999999876654
No 152
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=37.32 E-value=1.3e+02 Score=26.94 Aligned_cols=85 Identities=20% Similarity=0.148 Sum_probs=55.1
Q ss_pred ceEEEecCCCCCCCHHHHHHHHHHHHHcCceeeEecCCCcHHHHHHHhhcCCceEEeeecccccc-ccccchHHHHHHhC
Q 019222 128 IDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTR-EIEDDIIPLCRELG 206 (344)
Q Consensus 128 iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~l~~~~~~~g 206 (344)
.++.++-.|-+. +-++.+.++. .+.=-+.|=|-++...+..+++....+++|+.....-- ..-..+.++|+.+|
T Consensus 153 ~~i~~iEqP~~~----~d~~~~~~l~-~~~PIa~dEs~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~g 227 (263)
T cd03320 153 GRIEYIEQPLPP----DDLAELRRLA-AGVPIALDESLRRLDDPLALAAAGALGALVLKPALLGGPRALLELAEEARARG 227 (263)
T ss_pred cCCceEECCCCh----HHHHHHHHhh-cCCCeeeCCccccccCHHHHHhcCCCCEEEECchhcCCHHHHHHHHHHHHHcC
Confidence 355556655432 3355666665 33333566666777778888887778888888765432 11257899999999
Q ss_pred CcEEEcccCcc
Q 019222 207 IGIVAYSPLGR 217 (344)
Q Consensus 207 i~v~a~spl~~ 217 (344)
+.++..+-+..
T Consensus 228 i~~~~~~~~es 238 (263)
T cd03320 228 IPAVVSSALES 238 (263)
T ss_pred CCEEEEcchhh
Confidence 99988654443
No 153
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=36.88 E-value=2.2e+02 Score=27.77 Aligned_cols=60 Identities=22% Similarity=0.283 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHHHHhhcCCCcceEEEe-cCCCC-----------CCCHHH---HH-HHHHHHHHcCceeeEecCCCcH
Q 019222 107 GSPEYVRKCCEASLKRLDVDYIDLYYQ-HRVDT-----------SVSIED---TM-GELKKLVEEGKIKYIGLSEASA 168 (344)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~d~iDl~~l-H~~~~-----------~~~~~e---~~-~~L~~l~~~G~ir~iGvS~~~~ 168 (344)
-+.+.+.+.++..++ |+.++|.+|.+ +.|.. ..+.++ .+ .+.+.|.+.|- ..+++++|..
T Consensus 215 qt~e~~~~tl~~~~~-l~~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy-~~~~~~~fa~ 290 (455)
T TIGR00538 215 QTKESFAKTLEKVAE-LNPDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAGY-QFIGMDHFAK 290 (455)
T ss_pred CCHHHHHHHHHHHHh-cCCCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCCC-EEEeccceeC
Confidence 388888888886655 89999999976 22210 011222 22 23445666675 5699999864
No 154
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=36.54 E-value=1.6e+02 Score=27.02 Aligned_cols=145 Identities=21% Similarity=0.222 Sum_probs=80.9
Q ss_pred CHHHHHHHHHHHHhhcCCCcceEEEecCCCCC----CCHHHHHHHHHHHHHcCceeeEecCCCcHHHHHH-HhhcCCceE
Q 019222 108 SPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS----VSIEDTMGELKKLVEEGKIKYIGLSEASADTIRR-AHAVHPITA 182 (344)
Q Consensus 108 ~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~----~~~~e~~~~L~~l~~~G~ir~iGvS~~~~~~l~~-~~~~~~~~~ 182 (344)
..+.+++.+.+.+++.++|++=++.+-.-.+- ....+++++|++..+++.-. .++..+-. +.-..+..+
T Consensus 130 ~~e~~~~DI~~f~~~~~~d~vVvvn~asTE~~~~~~~~~~~t~~~l~~al~~~~~~------~~aS~~YA~AAl~~g~~f 203 (295)
T PF07994_consen 130 QVEQIREDIRDFKKENGLDRVVVVNVASTERYIPVIPGVHDTLEALEKALDENDPE------ISASMLYAYAALEAGVPF 203 (295)
T ss_dssp HHHHHHHHHHHHHHHTT-SCEEEEE-SSCC-S---CCCCCSSHHHHHHHHHTT-TT------HHHHHHHHHHHHHTTEEE
T ss_pred HHHHHHHHHHHHHHHhCCCcEEEEECCCCCCCCCCCccccCCHHHHHHHhhcCCCc------CChHHHHHHHHHHCCCCe
Confidence 45678889999999999997655555433221 12235688888888766532 23333221 111133222
Q ss_pred E-eeeccccccccccchHHHHHHhCCcEEEc---ccCcccccCCCCCCCCCCchhhhhcCCCCCchhhHHHHHHHHHHHH
Q 019222 183 V-QMEYSLWTREIEDDIIPLCRELGIGIVAY---SPLGRGFFAGKAVVESLPSESILAMHPRFSGENLEKNKLLYTRLET 258 (344)
Q Consensus 183 ~-q~~~n~~~~~~~~~l~~~~~~~gi~v~a~---spl~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 258 (344)
+ =.+-+..+ ...+.++++++|+.+..- ++++.| ..-.+-++.+
T Consensus 204 vN~tP~~~a~---~P~l~ela~~~gvpi~GdD~KT~lAAp------------------------------lvlDLirl~~ 250 (295)
T PF07994_consen 204 VNGTPSNIAD---DPALVELAEEKGVPIAGDDGKTPLAAP------------------------------LVLDLIRLAK 250 (295)
T ss_dssp EE-SSSTTTT---SHHHHHHHHHHTEEEEESSBS-HHHHH------------------------------HHHHHHHHHH
T ss_pred EeccCccccC---CHHHHHHHHHcCCCeecchHhhhhhhH------------------------------HHHHHHHHHH
Confidence 2 22222221 246899999999998652 222222 2334457889
Q ss_pred HHHHhCCCHHHHHHHHHHhCCCCeEeccCCCCHHHH
Q 019222 259 LAAKYGCTTPQLALAWLLHQGDDIVPIPGTTKITNL 294 (344)
Q Consensus 259 la~~~g~s~~q~al~w~l~~~~v~~~i~g~~~~~~l 294 (344)
+|.+.|+.-.+-.++|....|. +=.|......+
T Consensus 251 la~r~g~~Gv~~~ls~ffK~P~---~~~g~~~~~~l 283 (295)
T PF07994_consen 251 LALRRGMGGVQEWLSFFFKSPM---VPPGPPQEHDL 283 (295)
T ss_dssp HHHHTTS-EEHHHHHHHBSS-T-----TTSTT--HH
T ss_pred HHHHcCCCChhHHHHHHhcCCC---ccCCCCCCCcH
Confidence 9999999889999999999883 23444444444
No 155
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=36.30 E-value=34 Score=30.27 Aligned_cols=42 Identities=24% Similarity=0.430 Sum_probs=30.8
Q ss_pred cCCCCcccccceeccCcCC------CCCCCCCCHHHHHHHHHHHHHcCC
Q 019222 14 LGSQGLEVSRLGFGCGGLS------GIYNKPLSHEVGCSIIKETFNRGI 56 (344)
Q Consensus 14 lg~tg~~vs~lg~G~~~~g------~~~~~~~~~~~~~~~l~~A~~~Gi 56 (344)
-|+++ +.|-..+|..++. ..|...++++++.+++..|+++||
T Consensus 153 hGStd-~~Pf~alGSGslaAmsvlEsr~k~dlt~eea~~Lv~eAi~AGi 200 (271)
T KOG0173|consen 153 HGSTD-KLPFTALGSGSLAAMSVLESRWKPDLTKEEAIKLVCEAIAAGI 200 (271)
T ss_pred CCCcC-ccceeeeccchHHHHHHHHHhcCcccCHHHHHHHHHHHHHhhh
Confidence 34443 4565666665554 357777899999999999999998
No 156
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=36.21 E-value=3e+02 Score=24.10 Aligned_cols=25 Identities=16% Similarity=0.078 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHcCCCEEeCccCc
Q 019222 41 HEVGCSIIKETFNRGITLFDTSDVY 65 (344)
Q Consensus 41 ~~~~~~~l~~A~~~Gi~~~DtA~~Y 65 (344)
.....++++.|.+.|+..|=.+++.
T Consensus 15 ~~~~~e~i~~A~~~Gl~~i~itdH~ 39 (237)
T PRK00912 15 YDTVLRLISEASHLGYSGIALSNHS 39 (237)
T ss_pred cchHHHHHHHHHHCCCCEEEEecCc
Confidence 3457899999999999988766664
No 157
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=35.94 E-value=3.1e+02 Score=27.19 Aligned_cols=103 Identities=12% Similarity=0.079 Sum_probs=59.4
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcC-ceeeEecCC----C--cHHHHHHHhhcC
Q 019222 106 KGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG-KIKYIGLSE----A--SADTIRRAHAVH 178 (344)
Q Consensus 106 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G-~ir~iGvS~----~--~~~~l~~~~~~~ 178 (344)
..+++.|.+.++...++.|+.++. +...+...+.+.+.+.++++++.| .--.+++++ . +.+ +.+++...
T Consensus 221 ~rs~e~Vv~Ei~~l~~~~gv~~~~---~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~e-ll~~l~~a 296 (497)
T TIGR02026 221 HRDPKKFVDEIEWLVRTHGVGFFI---LADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDAD-ILHLYRRA 296 (497)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEE---EEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCHH-HHHHHHHh
Confidence 348899999999988888876543 333233334556777788888887 322344332 1 223 33344444
Q ss_pred CceEEeeecccccc--------c----cccchHHHHHHhCCcEEEc
Q 019222 179 PITAVQMEYSLWTR--------E----IEDDIIPLCRELGIGIVAY 212 (344)
Q Consensus 179 ~~~~~q~~~n~~~~--------~----~~~~l~~~~~~~gi~v~a~ 212 (344)
.+..+++-.--.++ . ...+.++.|+++||.+.+.
T Consensus 297 G~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~ 342 (497)
T TIGR02026 297 GLVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQ 342 (497)
T ss_pred CCcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEE
Confidence 44444443332222 1 1146788999999987553
No 158
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=35.85 E-value=4.1e+02 Score=25.57 Aligned_cols=50 Identities=12% Similarity=0.159 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCccCcCCC---ChHHHHHHHHhccC-----CCCcEEEEecc
Q 019222 39 LSHEVGCSIIKETFNRGITLFDTSDVYGVD---HDNEIMVGKALKQL-----PRDKIQLATKF 93 (344)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~---g~sE~~lG~~l~~~-----~R~~~~I~tK~ 93 (344)
....++.+.+..|++.|- .+.|+.. -.|.+.+.+.+.+. ..++|||++-+
T Consensus 78 ~ts~~a~~Av~~al~Sgk-----~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC 135 (447)
T KOG0259|consen 78 RTSQEAEQAVVDALRSGK-----GNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGC 135 (447)
T ss_pred cCCHHHHHHHHHHHhcCC-----CCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccc
Confidence 355678888888998873 4567641 24677788886542 77889988764
No 159
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=35.72 E-value=4.2e+02 Score=25.70 Aligned_cols=109 Identities=13% Similarity=0.141 Sum_probs=56.7
Q ss_pred ccCcCCCChHHHHHHHHhccC----CCCcEEEEeccCcccCCCcccCCCCCHHHHHHHHHHHHhhcCC-CcceEEEecCC
Q 019222 62 SDVYGVDHDNEIMVGKALKQL----PRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDV-DYIDLYYQHRV 136 (344)
Q Consensus 62 A~~Yg~~g~sE~~lG~~l~~~----~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~-d~iDl~~lH~~ 136 (344)
.-.||. |+.|-++|++. +.+=++|.|-+-... --+++..-+++.-++... ..+.++.++.|
T Consensus 64 d~V~Gg----~~~L~~ai~~~~~~~~p~~I~v~ttC~~~i----------iGdDi~~v~~~~~~~~~~~~~~~vi~v~tp 129 (435)
T cd01974 64 AAVFGG----QNNLIDGLKNAYAVYKPDMIAVSTTCMAEV----------IGDDLNAFIKNAKNKGSIPADFPVPFANTP 129 (435)
T ss_pred ceEECc----HHHHHHHHHHHHHhcCCCEEEEeCCchHhh----------hhccHHHHHHHHHHhccCCCCCeEEEecCC
Confidence 346776 67777777653 444456666653321 112233333333233311 14788999887
Q ss_pred CCCCC----HHHHHHHHHH-HH-------HcCceeeEe-cCCC-c-HHHHHHHhhcCCceEEe
Q 019222 137 DTSVS----IEDTMGELKK-LV-------EEGKIKYIG-LSEA-S-ADTIRRAHAVHPITAVQ 184 (344)
Q Consensus 137 ~~~~~----~~e~~~~L~~-l~-------~~G~ir~iG-vS~~-~-~~~l~~~~~~~~~~~~q 184 (344)
.-... .+.++++|-+ +. +.+.|--|| ..+. + .++++++++...+.++.
T Consensus 130 gf~gs~~~G~~~a~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~~~ 192 (435)
T cd01974 130 SFVGSHITGYDNMVKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDYTI 192 (435)
T ss_pred CCccCHHHHHHHHHHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCEEE
Confidence 54432 2234444432 22 234466665 3322 3 57788888877666654
No 160
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=35.56 E-value=64 Score=19.19 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHH
Q 019222 251 LLYTRLETLAAKYGCTTPQLAL 272 (344)
Q Consensus 251 ~~~~~l~~la~~~g~s~~q~al 272 (344)
+..+.|.++|++.|.|.+++.-
T Consensus 9 ~~~~~l~~~a~~~g~s~s~~ir 30 (39)
T PF01402_consen 9 ELYERLDELAKELGRSRSELIR 30 (39)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHH
Confidence 3557899999999999888653
No 161
>PTZ00081 enolase; Provisional
Probab=35.49 E-value=3.1e+02 Score=26.83 Aligned_cols=96 Identities=13% Similarity=0.081 Sum_probs=67.0
Q ss_pred CCHHHHHHHHHHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcC--ceeeEecC--CCcHHHHHHHhhcCCceE
Q 019222 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG--KIKYIGLS--EASADTIRRAHAVHPITA 182 (344)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G--~ir~iGvS--~~~~~~l~~~~~~~~~~~ 182 (344)
.+++.+.+-+.+.++.+ +++++-.|-+..+ |+.+.+|.++- .+.-+|=- ..+++.+.+.++....++
T Consensus 281 ~s~~eli~~~~~~l~~y-----~I~~IEDPl~~~D----~eg~~~Lt~~lg~~i~IvgDE~~~tn~~~l~~~I~~~aad~ 351 (439)
T PTZ00081 281 LTGEELVELYLDLVKKY-----PIVSIEDPFDQDD----WEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEKKACNA 351 (439)
T ss_pred cCHHHHHHHHHHHHhcC-----CcEEEEcCCCccc----HHHHHHHHHhhCCCceEEcCCcccCCHHHHHHHHHhCCCCE
Confidence 57777777777777766 4677777755433 56666666653 55544432 356899999998888889
Q ss_pred Eeeeccccccc-cccchHHHHHHhCCcEEE
Q 019222 183 VQMEYSLWTRE-IEDDIIPLCRELGIGIVA 211 (344)
Q Consensus 183 ~q~~~n~~~~~-~~~~l~~~~~~~gi~v~a 211 (344)
+|+..|-.-.- ...++..+|+++|+.++.
T Consensus 352 i~iKvnqiGGITe~l~~a~lA~~~Gi~~ii 381 (439)
T PTZ00081 352 LLLKVNQIGTVTEAIEAAKLAQKNGWGVMV 381 (439)
T ss_pred EEeccccccCHHHHHHHHHHHHHcCCcEEE
Confidence 99888854321 125689999999999876
No 162
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=35.18 E-value=3.3e+02 Score=24.36 Aligned_cols=57 Identities=21% Similarity=0.116 Sum_probs=33.0
Q ss_pred HHHHHHHHH---HHhhcCCC----cceEEEecCCCCCCCHHHHHHHHHHHHHcCceeeEecCCCc
Q 019222 110 EYVRKCCEA---SLKRLDVD----YIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEAS 167 (344)
Q Consensus 110 ~~i~~~~~~---sL~~L~~d----~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir~iGvS~~~ 167 (344)
+.+.+.+++ .+++.|++ ++|-..- .......--++++.++.+++.|.=-.+|+||-+
T Consensus 146 ~~~~~~~~~~i~~~~~~Gi~~~~Ii~DPg~g-f~ks~~~~~~~l~~i~~l~~~~~pil~G~SrkS 209 (257)
T cd00739 146 DEVLSFLEARLEAAESAGVARNRIILDPGIG-FGKTPEHNLELLRRLDELKQLGLPVLVGASRKS 209 (257)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHEEEecCCC-cccCHHHHHHHHHHHHHHHhCCCcEEEEecccH
Confidence 344444553 44566776 4454211 111111223678888888988877789999964
No 163
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=35.17 E-value=1.5e+02 Score=24.47 Aligned_cols=73 Identities=12% Similarity=0.073 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCccCcCCCChHHHHHHHHhccCCCCcEEEEecc-CcccCCCcccCCCCCHHHHHHHHHH
Q 019222 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKF-GCFMLDGVSIGVKGSPEYVRKCCEA 118 (344)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lG~~l~~~~R~~~~I~tK~-~~~~~~~~~~~~~~~~~~i~~~~~~ 118 (344)
.++...-.+++|-+.||.+|=.|..||. +-..+-+.+.. . =++++.|-- |.... ..-.+...+++
T Consensus 12 T~~tle~a~erA~elgik~~vVAS~tG~---tA~k~lemveg-~-lkvVvVthh~Gf~e~---------g~~e~~~E~~~ 77 (186)
T COG1751 12 TDETLEIAVERAKELGIKHIVVASSTGY---TALKALEMVEG-D-LKVVVVTHHAGFEEK---------GTQEMDEEVRK 77 (186)
T ss_pred hHHHHHHHHHHHHhcCcceEEEEecccH---HHHHHHHhccc-C-ceEEEEEeecccccC---------CceecCHHHHH
Confidence 4445566788888999999999999997 43333344432 1 345555543 32221 22335667888
Q ss_pred HHhhcCCC
Q 019222 119 SLKRLDVD 126 (344)
Q Consensus 119 sL~~L~~d 126 (344)
-|+..|.+
T Consensus 78 ~L~erGa~ 85 (186)
T COG1751 78 ELKERGAK 85 (186)
T ss_pred HHHHcCce
Confidence 88888853
No 164
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=35.16 E-value=72 Score=30.08 Aligned_cols=100 Identities=9% Similarity=0.003 Sum_probs=56.7
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcceEEEecCCCC---CCCHHHHHHHHHHHHHcCceeeEecCCCcHHHHHHHhhcCCceE
Q 019222 106 KGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDT---SVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITA 182 (344)
Q Consensus 106 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~---~~~~~e~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~ 182 (344)
.++.+. +-.+-+.|.++|+++|++-..-.|.. ..+.+|+++.+.+ ...++..++. .....++.+++.. .+.
T Consensus 64 ~~s~e~-Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~~---~~~~~~~~l~-~n~~die~A~~~g-~~~ 137 (347)
T PLN02746 64 IVPTSV-KVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVRN---LEGARFPVLT-PNLKGFEAAIAAG-AKE 137 (347)
T ss_pred CCCHHH-HHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHHh---ccCCceeEEc-CCHHHHHHHHHcC-cCE
Confidence 455554 44555669999999999864434421 1234455555543 2334555553 4778888887753 222
Q ss_pred Eeee---------ccccccccc-----cchHHHHHHhCCcEEE
Q 019222 183 VQME---------YSLWTREIE-----DDIIPLCRELGIGIVA 211 (344)
Q Consensus 183 ~q~~---------~n~~~~~~~-----~~l~~~~~~~gi~v~a 211 (344)
+.+. .|+-....+ .+++++++++|+.+.+
T Consensus 138 v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~ 180 (347)
T PLN02746 138 VAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRG 180 (347)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 2222 111111111 4688999999998853
No 165
>PRK06740 histidinol-phosphatase; Validated
Probab=35.04 E-value=3.8e+02 Score=25.00 Aligned_cols=49 Identities=12% Similarity=0.122 Sum_probs=32.0
Q ss_pred HHHHHHHhhcCCCcceEEEecCCCC-----CC--------C----HHHHHHHHHHHHHcCceeeEec
Q 019222 114 KCCEASLKRLDVDYIDLYYQHRVDT-----SV--------S----IEDTMGELKKLVEEGKIKYIGL 163 (344)
Q Consensus 114 ~~~~~sL~~L~~d~iDl~~lH~~~~-----~~--------~----~~e~~~~L~~l~~~G~ir~iGv 163 (344)
..+++.|+....||+ +.-+|..+. .. + .+.-++.+.++.+.|++..||=
T Consensus 156 ~~~~~~l~~~~~Dyv-IgSVH~i~g~~~~~~~~~~~~~~~~~~~~~~~Yf~~~~~~i~~~~fdvIgH 221 (331)
T PRK06740 156 QELQSLLALGDFDYV-IGSVHFLNGWGFDNPDTKEYFEEHDLYALYDTFFKTVECAIRSELFDIIAH 221 (331)
T ss_pred HHHHHHHhcCCCCEE-EEeeeEeCCcCCCCccHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCEeeC
Confidence 356667777778887 778897531 11 1 1224677888889998877763
No 166
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=34.98 E-value=2.8e+02 Score=24.93 Aligned_cols=100 Identities=19% Similarity=0.230 Sum_probs=57.2
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCc-eeeEecCCCcHHHHHHHhhcCCceEE
Q 019222 105 VKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGK-IKYIGLSEASADTIRRAHAVHPITAV 183 (344)
Q Consensus 105 ~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~~ 183 (344)
..++.+...+-++. |.++|++.|.+-. |... .+.+++.+.+.+.++ .+.++....+.+.++.+.+. .++.+
T Consensus 17 ~~~s~~~k~~i~~~-L~~~Gv~~IEvG~---P~~~---~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~-g~~~i 88 (262)
T cd07948 17 AFFDTEDKIEIAKA-LDAFGVDYIELTS---PAAS---PQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVET-GVDGV 88 (262)
T ss_pred CCCCHHHHHHHHHH-HHHcCCCEEEEEC---CCCC---HHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHc-CcCEE
Confidence 35676666555555 9999999988863 5333 233445555554443 33355556677788887764 33333
Q ss_pred eeecc--c------cccccc------cchHHHHHHhCCcEEEc
Q 019222 184 QMEYS--L------WTREIE------DDIIPLCRELGIGIVAY 212 (344)
Q Consensus 184 q~~~n--~------~~~~~~------~~l~~~~~~~gi~v~a~ 212 (344)
-+.++ . +....+ .+++.+++++|+.+...
T Consensus 89 ~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~ 131 (262)
T cd07948 89 DLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFS 131 (262)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 33221 1 111111 45678889999876554
No 167
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=34.91 E-value=3.8e+02 Score=24.99 Aligned_cols=149 Identities=18% Similarity=0.074 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHcCCCEEeCccCcCCCChHHHHHHHHhccCCCCcEEEEeccCcccCCCcccCCCCCHHHHHHHHHHHHh
Q 019222 42 EVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLK 121 (344)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 121 (344)
++..+.+..+++.|++.|=.-- +. ..-.+.+ +++++.-. ++-|..=... .++.+... .++
T Consensus 139 ~~~~~~~~~~~~~Gf~~~KiKv--~~-~~d~~~l-~~vr~~~g-~~~l~lDaN~----------~~~~~~a~-----~~~ 198 (354)
T cd03317 139 EQLLKQIERYLEEGYKRIKLKI--KP-GWDVEPL-KAVRERFP-DIPLMADANS----------AYTLADIP-----LLK 198 (354)
T ss_pred HHHHHHHHHHHHcCCcEEEEec--Ch-HHHHHHH-HHHHHHCC-CCeEEEECCC----------CCCHHHHH-----HHH
Confidence 5677788888999999873211 22 1112333 33333211 3323222211 23444431 244
Q ss_pred hcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCce-eeEecCCCcHHHHHHHhhcCCceEEeeeccccccc-cccchH
Q 019222 122 RLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKI-KYIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDDII 199 (344)
Q Consensus 122 ~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~i-r~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~l~ 199 (344)
+| +..++.++-.|-+.. -++.+.++++.-.+ -+.|=|.++.+.+..+++...++++|+..+..-.- ....+.
T Consensus 199 ~l--~~~~i~~iEeP~~~~----d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~~~ik~~~~GGit~~~~i~ 272 (354)
T cd03317 199 RL--DEYGLLMIEQPLAAD----DLIDHAELQKLLKTPICLDESIQSAEDARKAIELGACKIINIKPGRVGGLTEALKIH 272 (354)
T ss_pred Hh--hcCCccEEECCCChh----HHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHH
Confidence 44 234677777775432 35667777665432 36677788999999999888888999887654321 125789
Q ss_pred HHHHHhCCcEEEcccCc
Q 019222 200 PLCRELGIGIVAYSPLG 216 (344)
Q Consensus 200 ~~~~~~gi~v~a~spl~ 216 (344)
.+|+.+|+.++..+.+.
T Consensus 273 ~~A~~~gi~~~~g~~~e 289 (354)
T cd03317 273 DLCQEHGIPVWCGGMLE 289 (354)
T ss_pred HHHHHcCCcEEecCccc
Confidence 99999999997654443
No 168
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=34.77 E-value=3.8e+02 Score=24.87 Aligned_cols=138 Identities=9% Similarity=0.024 Sum_probs=76.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCccC----------cCCC-ChHHHHHHHHhccC-CCCcEEEEeccCcccCCCcccCCCC
Q 019222 40 SHEVGCSIIKETFNRGITLFDTSDV----------YGVD-HDNEIMVGKALKQL-PRDKIQLATKFGCFMLDGVSIGVKG 107 (344)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~----------Yg~~-g~sE~~lG~~l~~~-~R~~~~I~tK~~~~~~~~~~~~~~~ 107 (344)
+.++..+..+.+.+.|+..||.--. +|.. ...-+.+.+.++.. ..-++-|+.|+...+..
T Consensus 75 ~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~-------- 146 (321)
T PRK10415 75 DPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAP-------- 146 (321)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccC--------
Confidence 6677777777778899999994321 2210 00122333333221 11134577776533211
Q ss_pred CHHHHHHHHHHHHhhcCCCcceEEEecCCCCCCCH--HHHHHHHHHHHHcCceeeEecCCC-cHHHHHHHhhcCCceEEe
Q 019222 108 SPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSI--EDTMGELKKLVEEGKIKYIGLSEA-SADTIRRAHAVHPITAVQ 184 (344)
Q Consensus 108 ~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~--~e~~~~L~~l~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~q 184 (344)
+..... .+-+-++..|. |.+.+|.-...... ..-|+.+.++++.=.|--||...- ++++++++++....+.+|
T Consensus 147 ~~~~~~-~~a~~le~~G~---d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVm 222 (321)
T PRK10415 147 EHRNCV-EIAQLAEDCGI---QALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALM 222 (321)
T ss_pred CcchHH-HHHHHHHHhCC---CEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEE
Confidence 111111 23333566775 55677865322111 123777888888767777877764 788888888777788887
Q ss_pred eeccc
Q 019222 185 MEYSL 189 (344)
Q Consensus 185 ~~~n~ 189 (344)
+-=-+
T Consensus 223 iGR~~ 227 (321)
T PRK10415 223 IGRAA 227 (321)
T ss_pred EChHh
Confidence 75333
No 169
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=34.71 E-value=3.9e+02 Score=25.02 Aligned_cols=23 Identities=17% Similarity=0.147 Sum_probs=14.6
Q ss_pred CCHHHHHHHH-------HHHHHcCCCEEeC
Q 019222 39 LSHEVGCSII-------KETFNRGITLFDT 61 (344)
Q Consensus 39 ~~~~~~~~~l-------~~A~~~Gi~~~Dt 61 (344)
++.++..+++ +.|.++|+..+|-
T Consensus 131 mt~~eI~~ii~~f~~AA~ra~~aGfDgVei 160 (343)
T cd04734 131 MEEEDIEEIIAAFADAARRCQAGGLDGVEL 160 (343)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 4666554443 3456789999874
No 170
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=34.61 E-value=7e+02 Score=27.94 Aligned_cols=90 Identities=12% Similarity=0.075 Sum_probs=55.8
Q ss_pred hhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHc-Cce--eeEecCCCcHHHHHHHhhcCCceEEeeeccccc--cccc
Q 019222 121 KRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEE-GKI--KYIGLSEASADTIRRAHAVHPITAVQMEYSLWT--REIE 195 (344)
Q Consensus 121 ~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~-G~i--r~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~--~~~~ 195 (344)
..-|-+.||+-.= ....+-++.++.+-.+.+. -.+ --|-|-+++++.++.+++..+=..+-+..|... ...
T Consensus 378 ve~GA~iIDVn~~---~~~vd~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~v~eaaLk~~~G~~IINsIs~~~g~~~~- 453 (1178)
T TIGR02082 378 VENGAQILDINVD---YGMLDGVAAMKRFLNLLASEPDISTVPLMLDSSEWAVLEAGLKCIQGKCIVNSISLKDGEERF- 453 (1178)
T ss_pred HHCCCCEEEECCC---CCCCCHHHHHHHHHHHHHhccCCCCCeEEEeCCcHHHHHHHHHhcCCCCEEEeCCCCCCCccH-
Confidence 3568899998532 1223444555555555543 212 236777889999999988733233444555532 222
Q ss_pred cchHHHHHHhCCcEEEccc
Q 019222 196 DDIIPLCRELGIGIVAYSP 214 (344)
Q Consensus 196 ~~l~~~~~~~gi~v~a~sp 214 (344)
..+++.|+++|..++.+.-
T Consensus 454 ~~~~~l~~~yga~vV~m~~ 472 (1178)
T TIGR02082 454 IETAKLIKEYGAAVVVMAF 472 (1178)
T ss_pred HHHHHHHHHhCCCEEEEec
Confidence 3689999999999998753
No 171
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=34.59 E-value=2.5e+02 Score=26.12 Aligned_cols=107 Identities=17% Similarity=0.216 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHcCCCEEeCccCcCCCChHHHHHHHHhccCCCCcEEEEeccCcccCCCcccCCCCCHHHHHHHHHHHHh
Q 019222 42 EVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLK 121 (344)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 121 (344)
+..+++++.+-++|| .+|.|.. +++.+=+++.- .+..+|+|......- .+..+.--.++++...+
T Consensus 149 ~~Gk~lV~~~N~LgI-iiDlSH~------s~kt~~Dvl~~--s~~PviaSHSN~~al------~~h~RNl~D~qlkaI~~ 213 (313)
T COG2355 149 PFGKELVREMNELGI-IIDLSHL------SDKTFWDVLDL--SKAPVVASHSNARAL------VDHPRNLSDEQLKAIAE 213 (313)
T ss_pred HHHHHHHHHHHhcCC-EEEeccc------CCccHHHHHhc--cCCceEEecCCchhc------cCCCCCCCHHHHHHHHh
Confidence 356899999999999 9999964 35556666653 344566666543321 12223333455666655
Q ss_pred hcCCCcceEEEecCC-----CCCCCHHHHHHHHHHHHHcCceeeEecCC
Q 019222 122 RLDVDYIDLYYQHRV-----DTSVSIEDTMGELKKLVEEGKIKYIGLSE 165 (344)
Q Consensus 122 ~L~~d~iDl~~lH~~-----~~~~~~~e~~~~L~~l~~~G~ir~iGvS~ 165 (344)
+=| -|.+-++-.. ....++++..+.++.+++.+-+++||+..
T Consensus 214 ~gG--vIgv~~~~~fl~~~~~~~atldd~v~hI~h~v~~~G~dhVglGs 260 (313)
T COG2355 214 TGG--VIGVNFIPAFLRPGGAARATLDDLVRHIDHFVELVGIDHVGLGS 260 (313)
T ss_pred cCC--EEEEEeehhhccCCCCCCCCHHHHHHHHHHHHHhcCcceeEecc
Confidence 554 3343333211 23557999999999999999999999975
No 172
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=34.35 E-value=1.8e+02 Score=27.41 Aligned_cols=105 Identities=11% Similarity=0.055 Sum_probs=62.3
Q ss_pred CCCcEEEEeccCcccCC----Cc--ccCCCCCHHHHHHHHHHHHhhcCCCcceEEEecC-CCCCCCHHHHHHHHHHHHHc
Q 019222 83 PRDKIQLATKFGCFMLD----GV--SIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHR-VDTSVSIEDTMGELKKLVEE 155 (344)
Q Consensus 83 ~R~~~~I~tK~~~~~~~----~~--~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~-~~~~~~~~e~~~~L~~l~~~ 155 (344)
.|.-++|||-+|....- .+ ......+.+.|..++...-+. +.++-+.+-. -+|....++++++++.+++.
T Consensus 101 ~r~t~cvSsQvGC~~~C~FC~Tg~~g~~rnLt~~EIl~Qv~~~~~~---~~i~nIvfmGmGEPL~N~d~vi~al~~l~~~ 177 (345)
T PRK14466 101 DRATLCVSSQVGCKMNCLFCMTGKQGFTGNLTAAQILNQIYSLPER---DKLTNLVFMGMGEPLDNLDEVLKALEILTAP 177 (345)
T ss_pred CceEEEEEcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhhhhc---CCCCeEEEeeeCcCcccHHHHHHHHHHHhhc
Confidence 46778888888765432 11 123357899999998876322 2234333332 34445578899999999887
Q ss_pred Cce----eeEecCCCcHH-HHHHHhhcCCceEEeeeccccc
Q 019222 156 GKI----KYIGLSEASAD-TIRRAHAVHPITAVQMEYSLWT 191 (344)
Q Consensus 156 G~i----r~iGvS~~~~~-~l~~~~~~~~~~~~q~~~n~~~ 191 (344)
.-. |.|-||+-... .+.++....+ ..+.+.++..+
T Consensus 178 ~g~~~s~r~ItVsT~G~~~~i~~l~~~~~-~~LavSLha~~ 217 (345)
T PRK14466 178 YGYGWSPKRITVSTVGLKKGLKRFLEESE-CHLAISLHSPF 217 (345)
T ss_pred cccCcCCceEEEEcCCCchHHHHHhhccC-cEEEEEcCCCC
Confidence 544 67888876543 3666554333 23345555333
No 173
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=34.22 E-value=85 Score=28.63 Aligned_cols=108 Identities=15% Similarity=0.141 Sum_probs=59.9
Q ss_pred CceeeEecCCCcHHHHHHHhhc---CCceEEeeeccccccc---cccchHHHHHHhCCcEEEcccCcccccCCCCCCCCC
Q 019222 156 GKIKYIGLSEASADTIRRAHAV---HPITAVQMEYSLWTRE---IEDDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESL 229 (344)
Q Consensus 156 G~ir~iGvS~~~~~~l~~~~~~---~~~~~~q~~~n~~~~~---~~~~l~~~~~~~gi~v~a~spl~~G~l~~~~~~~~~ 229 (344)
.++-.+--.+++.+.+.++.+. .-+...-.-+|-++.. .+..+.+++++-++-++.- |.=
T Consensus 155 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~aT~~RQ~a~~~La~~vD~miVIG-----g~~--------- 220 (281)
T PF02401_consen 155 KKVAVVSQTTQSVEKFEEIVEALKKRFPELEGPVFNTICYATQNRQEAARELAKEVDAMIVIG-----GKN--------- 220 (281)
T ss_dssp TCEEEEE-TTS-HHHHHHHHHHHHHHSTCEE-SCC-S--CHHHHHHHHHHHHHCCSSEEEEES------TT---------
T ss_pred CeEEEEEeecccHHHHHHHHHHHHHhCccccCCCCCCCCHhHHHHHHHHHHHHhhCCEEEEec-----CCC---------
Confidence 4777788888888776655443 1111111223333321 1245777777766555441 210
Q ss_pred CchhhhhcCCCCCchhhHHHHHHHHHHHHHHHHhCC------CHHHHHHHHHHhCCCCeEeccCCCCHHHHHHhH
Q 019222 230 PSESILAMHPRFSGENLEKNKLLYTRLETLAAKYGC------TTPQLALAWLLHQGDDIVPIPGTTKITNLDNNI 298 (344)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~------s~~q~al~w~l~~~~v~~~i~g~~~~~~l~~nl 298 (344)
+++. .+|.++|++++. ++.++-..|+-... .+.+..|+|+|+.+-+.+
T Consensus 221 -------------SsNT-------~kL~eia~~~~~~t~~Ie~~~el~~~~l~~~~-~VGItaGASTP~~ii~eV 274 (281)
T PF02401_consen 221 -------------SSNT-------RKLAEIAKEHGKPTYHIETADELDPEWLKGVK-KVGITAGASTPDWIIEEV 274 (281)
T ss_dssp --------------HHH-------HHHHHHHHHCTTCEEEESSGGG--HHHHTT-S-EEEEEE-TTS-HHHHHHH
T ss_pred -------------CccH-------HHHHHHHHHhCCCEEEeCCccccCHhHhCCCC-EEEEEccCCCCHHHHHHH
Confidence 1111 478999999875 78999999988775 478899999999887654
No 174
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=33.76 E-value=3.6e+02 Score=25.96 Aligned_cols=96 Identities=14% Similarity=0.131 Sum_probs=63.3
Q ss_pred CCHHHHHHHHHHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcC--ceeeEecC--CCcHHHHHHHhhcCCceE
Q 019222 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG--KIKYIGLS--EASADTIRRAHAVHPITA 182 (344)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G--~ir~iGvS--~~~~~~l~~~~~~~~~~~ 182 (344)
++++...+-+.+.++.+ +++++-.|-+..+ |+.+.+|.+.- .+.-+|=- .++++.+.++++....++
T Consensus 261 ~t~~eai~~~~~l~e~~-----~i~~iEdPl~~~D----~eg~~~L~~~~g~~ipi~gdE~~~~~~~~~~~~i~~~a~d~ 331 (408)
T cd03313 261 LTSEELIDYYKELVKKY-----PIVSIEDPFDEDD----WEGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEKKAANA 331 (408)
T ss_pred cCHHHHHHHHHHHHHhC-----CcEEEEeCCCCcC----HHHHHHHHHhcCCCCeEEcCCcccCCHHHHHHHHHhCCCCE
Confidence 45565555555555554 5788888866554 55566666663 44332222 247899999988888888
Q ss_pred Eeeeccccccc-cccchHHHHHHhCCcEEE
Q 019222 183 VQMEYSLWTRE-IEDDIIPLCRELGIGIVA 211 (344)
Q Consensus 183 ~q~~~n~~~~~-~~~~l~~~~~~~gi~v~a 211 (344)
+|+..+-.-.- ...++..+|+.+|+.++.
T Consensus 332 v~ik~~~iGGite~~~ia~lA~~~G~~~~~ 361 (408)
T cd03313 332 LLIKVNQIGTLTETIEAIKLAKKNGYGVVV 361 (408)
T ss_pred EEEcccccCCHHHHHHHHHHHHHcCCeEEc
Confidence 88887754321 125688999999999864
No 175
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=33.56 E-value=1e+02 Score=29.54 Aligned_cols=68 Identities=16% Similarity=0.083 Sum_probs=50.3
Q ss_pred HHHHHHHHHHcCc--ee-eEecCCCcHHHHHHHhhcCCceEEeeeccccccc-cccchHHHHHHhCCcEEEc
Q 019222 145 TMGELKKLVEEGK--IK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDDIIPLCRELGIGIVAY 212 (344)
Q Consensus 145 ~~~~L~~l~~~G~--ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~l~~~~~~~gi~v~a~ 212 (344)
-++.+.+|++.-. |. ..|-+.++...+.++++..-.+++|....-.--- ....+..+|+.+|+.++.+
T Consensus 247 d~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~~a~Divq~d~~~~GGit~~~kia~lA~a~gi~~~pH 318 (394)
T PRK15440 247 DYWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEMGCIDIIQPDVGWCGGLTELVKIAALAKARGQLVVPH 318 (394)
T ss_pred cHHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHcCCCCEEeCCccccCCHHHHHHHHHHHHHcCCeeccc
Confidence 4677777877654 22 3377788889999999888889999887764321 1257899999999998765
No 176
>PRK09061 D-glutamate deacylase; Validated
Probab=33.53 E-value=3.2e+02 Score=27.23 Aligned_cols=113 Identities=9% Similarity=-0.008 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHcCCCEEeCccCcCCCChHHHHHHHHhccCCCCcEEEEeccCcccCCCcccCCCCCHHHHHHHHHHHHhh
Q 019222 43 VGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKR 122 (344)
Q Consensus 43 ~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~ 122 (344)
+..++++.|++.|+..|=+...|-. +.+...+-+.++...+.+..|.+.+..... .+......++++.++.
T Consensus 170 ~m~~ll~~al~~Ga~gis~~~~y~p-~~~~~eL~~l~~~A~~~g~~v~~H~e~~~~--------~~~~~e~~av~~~i~l 240 (509)
T PRK09061 170 EILELLEQGLDEGALGIGIGAGYAP-GTGHKEYLELARLAARAGVPTYTHVRYLSN--------VDPRSSVDAYQELIAA 240 (509)
T ss_pred HHHHHHHHHHHCCCCEEecCCccCC-CCCHHHHHHHHHHHHHcCCEEEEEecCccc--------CCchhHHHHHHHHHHH
Confidence 3677888999999999977656643 334555555555434445566665432210 0112223344444433
Q ss_pred cCCCcceEEEecCCCC-CCCHHHHHHHHHHHHHcCceeeEecC
Q 019222 123 LDVDYIDLYYQHRVDT-SVSIEDTMGELKKLVEEGKIKYIGLS 164 (344)
Q Consensus 123 L~~d~iDl~~lH~~~~-~~~~~e~~~~L~~l~~~G~ir~iGvS 164 (344)
...--.-+.+.|--.. ..+..+.++.+++++++|.--..-++
T Consensus 241 A~~~G~rv~IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt~e~~ 283 (509)
T PRK09061 241 AAETGAHMHICHVNSTSLRDIDRCLALVEKAQAQGLDVTTEAY 283 (509)
T ss_pred HHHhCCCEEEEeeccCCcccHHHHHHHHHHHHHcCCcEEEEec
Confidence 2211223666675431 23467889999999999854433443
No 177
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=33.44 E-value=97 Score=21.08 Aligned_cols=17 Identities=24% Similarity=0.528 Sum_probs=15.3
Q ss_pred HHHHHHHHhCCCHHHHH
Q 019222 255 RLETLAAKYGCTTPQLA 271 (344)
Q Consensus 255 ~l~~la~~~g~s~~q~a 271 (344)
.+.+||+++|+|..+|-
T Consensus 24 ~lkdIA~~Lgvs~~tIr 40 (60)
T PF10668_consen 24 KLKDIAEKLGVSESTIR 40 (60)
T ss_pred cHHHHHHHHCCCHHHHH
Confidence 68899999999999875
No 178
>PRK07328 histidinol-phosphatase; Provisional
Probab=33.38 E-value=3.5e+02 Score=24.15 Aligned_cols=108 Identities=12% Similarity=0.146 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHcCCCEEeCccCcCC----C-------ChHHHHHHHHhcc-------CCCCcEEEEeccCcccCCCcccC
Q 019222 43 VGCSIIKETFNRGITLFDTSDVYGV----D-------HDNEIMVGKALKQ-------LPRDKIQLATKFGCFMLDGVSIG 104 (344)
Q Consensus 43 ~~~~~l~~A~~~Gi~~~DtA~~Yg~----~-------g~sE~~lG~~l~~-------~~R~~~~I~tK~~~~~~~~~~~~ 104 (344)
...++++.|.+.|+..+=.+++.-. + +.....+-..+++ ..+=+|++-.-++..
T Consensus 19 ~~ee~v~~A~~~Gl~~i~~TdH~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~l~~~y~~i~Il~GiE~~~~-------- 90 (269)
T PRK07328 19 TPEEYVQAARRAGLKEIGFTDHLPMYFLPPEWRDPGLAMRLEELPFYVSEVERLRARFPDLYVRLGIEADYH-------- 90 (269)
T ss_pred CHHHHHHHHHHCCCCEEEEecCCCCCCcCcccccccccccHHHHHHHHHHHHHHHHHcCCCeEEEEEEeccc--------
Confidence 3678899999999998766655211 0 0111122222222 111123333332221
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCcceEEEecCCCCC-------------CCHHHHH----HHHHHHHHcCceeeEecC
Q 019222 105 VKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS-------------VSIEDTM----GELKKLVEEGKIKYIGLS 164 (344)
Q Consensus 105 ~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~-------------~~~~e~~----~~L~~l~~~G~ir~iGvS 164 (344)
+ .....+++.|++...||+ +.-+|+.+.. .+.++++ +.+.++.+.|.+..+|=-
T Consensus 91 ----~-~~~~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~ 161 (269)
T PRK07328 91 ----P-GTEEFLERLLEAYPFDYV-IGSVHYLGAWGFDNPDFVAEYEERDLDELYRRYFALVEQAARSGLFDIIGHP 161 (269)
T ss_pred ----C-CcHHHHHHHHHhCCCCeE-EEEEeecCCcCCCChhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCEeeCc
Confidence 1 124456667777777887 7788986421 1222333 357778888887766643
No 179
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=33.24 E-value=3.2e+02 Score=26.43 Aligned_cols=59 Identities=10% Similarity=-0.056 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHHhhcCCCcceEEEecCCCCCC--------CHH---HHH-HHHHHHHHcCceeeEecCCCcH
Q 019222 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSV--------SIE---DTM-GELKKLVEEGKIKYIGLSEASA 168 (344)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~--------~~~---e~~-~~L~~l~~~G~ir~iGvS~~~~ 168 (344)
.+.+.+.+.++..+ +|+.++|.+|.+.-. +.+ +.+ +.+ .+.+.|.+.|- +.+++|+|..
T Consensus 205 qt~e~~~~~l~~~~-~l~~~~is~y~L~~~-~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy-~~yei~~far 275 (430)
T PRK08208 205 QTHASWMESLDQAL-VYRPEELFLYPLYVR-PLTGLGRRARAWDDQRLSLYRLARDLLLEAGY-TQTSMRMFRR 275 (430)
T ss_pred CCHHHHHHHHHHHH-hCCCCEEEEcccccc-CCCccchhcCCCHHHHHHHHHHHHHHHHHcCC-eEEeecceec
Confidence 47888888888776 589999999987532 111 112 222 34555677775 5599999864
No 180
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=33.20 E-value=3.4e+02 Score=25.63 Aligned_cols=27 Identities=19% Similarity=0.159 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHHHHhhcCCCcceEEEec
Q 019222 107 GSPEYVRKCCEASLKRLDVDYIDLYYQH 134 (344)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~d~iDl~~lH 134 (344)
-+.+.+.+.++..+ +++.++|.+|.+.
T Consensus 163 qt~e~~~~~l~~~~-~l~~~~is~y~l~ 189 (374)
T PRK05799 163 QTLEDWKETLEKVV-ELNPEHISCYSLI 189 (374)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEEeccE
Confidence 37788888777775 4888999888764
No 181
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=32.98 E-value=4.1e+02 Score=25.14 Aligned_cols=102 Identities=14% Similarity=0.086 Sum_probs=58.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCccCcCCCChHHHHHHHHhccCCCCcE-EEEeccCcccCCCcccCCCCCHHHHHHHHH
Q 019222 39 LSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKI-QLATKFGCFMLDGVSIGVKGSPEYVRKCCE 117 (344)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lG~~l~~~~R~~~-~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 117 (344)
.+.++..+.++.+.+.|++.|=-..--+.....-+.+-+.++... +.+ .+...++ ..+.+.+
T Consensus 103 Ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~eii~~Ik-~~~p~i~Iei~-----------~lt~e~~----- 165 (366)
T TIGR02351 103 LNEEEIEREIEAIKKSGFKEILLVTGESEKAAGVEYIAEAIKLAR-EYFSSLAIEVQ-----------PLNEEEY----- 165 (366)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHH-HhCCccccccc-----------cCCHHHH-----
Confidence 478899999999999999977522111110011234555554421 110 0111111 1244444
Q ss_pred HHHhhcCCCcceEEE----------ecCCCCCCCHHHHHHHHHHHHHcCc
Q 019222 118 ASLKRLDVDYIDLYY----------QHRVDTSVSIEDTMGELKKLVEEGK 157 (344)
Q Consensus 118 ~sL~~L~~d~iDl~~----------lH~~~~~~~~~e~~~~L~~l~~~G~ 157 (344)
+-|+..|++.+-+.+ +|......+.++.+++++.+++.|.
T Consensus 166 ~~Lk~aGv~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~ 215 (366)
T TIGR02351 166 KKLVEAGLDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGM 215 (366)
T ss_pred HHHHHcCCCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCC
Confidence 677888888776542 2322234468889999999999985
No 182
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=32.81 E-value=2.5e+02 Score=26.74 Aligned_cols=87 Identities=14% Similarity=0.166 Sum_probs=56.9
Q ss_pred EEecCCCC------------CCCHHHHHHHHHH-HHHcC---ceeeEecC--CCcHHHHH---HHhhcCCceEEeeeccc
Q 019222 131 YYQHRVDT------------SVSIEDTMGELKK-LVEEG---KIKYIGLS--EASADTIR---RAHAVHPITAVQMEYSL 189 (344)
Q Consensus 131 ~~lH~~~~------------~~~~~e~~~~L~~-l~~~G---~ir~iGvS--~~~~~~l~---~~~~~~~~~~~q~~~n~ 189 (344)
+-||.+++ ..+++++++++.+ +.+.| +|+++=+. |.+.+++. +++...+..++-++||+
T Consensus 238 iSL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~~~~VnlIpyn~ 317 (368)
T PRK14456 238 VSLHSADQEKRERLMPQAARDYPLDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRFFCKINLIDYNS 317 (368)
T ss_pred EEecCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcCCCeeEEeeecc
Confidence 67887742 2367888998875 55556 35555444 34444444 44444456788899998
Q ss_pred cccccc--------cchHHHHHHhCCcEEEcccCcc
Q 019222 190 WTREIE--------DDIIPLCRELGIGIVAYSPLGR 217 (344)
Q Consensus 190 ~~~~~~--------~~l~~~~~~~gi~v~a~spl~~ 217 (344)
+..... ....+..+++|+.+......+.
T Consensus 318 ~~~~~~~~ps~e~i~~F~~~L~~~Gi~vtvR~~~G~ 353 (368)
T PRK14456 318 IVNIKFEPVCSSTRERFRDRLLDAGLQVTVRKSYGT 353 (368)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCcEEeeCCCCc
Confidence 765311 3466777899999999877764
No 183
>COG1151 6Fe-6S prismane cluster-containing protein [Energy production and conversion]
Probab=32.74 E-value=2.4e+02 Score=28.39 Aligned_cols=95 Identities=17% Similarity=0.181 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhhcCCCcceEEEecCCC---CCCCHHHHHHHHHHHHHcCceeeE----ecCCCc--HHHHHHHhhcCCc
Q 019222 110 EYVRKCCEASLKRLDVDYIDLYYQHRVD---TSVSIEDTMGELKKLVEEGKIKYI----GLSEAS--ADTIRRAHAVHPI 180 (344)
Q Consensus 110 ~~i~~~~~~sL~~L~~d~iDl~~lH~~~---~~~~~~e~~~~L~~l~~~G~ir~i----GvS~~~--~~~l~~~~~~~~~ 180 (344)
+...+-++..++..+-.+.+ -|-.. ....+.++.+-|-+++++|+||.+ |.++-. ...+..+.+..|-
T Consensus 360 ~~~~~vIe~A~e~~~~r~~~---~~~ivvGFs~~~il~a~d~lielI~sGkIKgv~~v~GCd~~~~~~~yvt~~kelipr 436 (576)
T COG1151 360 EDFSEVIEMAIENFKNRKSE---KHKIVVGFSHESILAAADPLIELIASGKIKGVVVVVGCDGLRSGRHYVTLFKELIPR 436 (576)
T ss_pred hhHHHHHHHHHhccCCcccc---cceeEEeecHHHHHHHHHHHHHHHhcCCcceEEEEeeCCCCCCCcccHHHHHHhccc
Confidence 66677888888888877777 22221 112344667778899999999987 344421 1233333333343
Q ss_pred eEEeeeccccccccccchHHHHHHhCCcE
Q 019222 181 TAVQMEYSLWTREIEDDIIPLCRELGIGI 209 (344)
Q Consensus 181 ~~~q~~~n~~~~~~~~~l~~~~~~~gi~v 209 (344)
+++-+.. -+......-+++|...||+-
T Consensus 437 D~lVLt~--GCgk~~~~~~~vc~~lGIPp 463 (576)
T COG1151 437 DILVLTL--GCGKYRFNKADVGDILGIPR 463 (576)
T ss_pred ceEEEec--ccchhhhhhhccccccCCCc
Confidence 4333322 22221223457788888774
No 184
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=32.63 E-value=2.8e+02 Score=26.54 Aligned_cols=28 Identities=14% Similarity=0.147 Sum_probs=23.6
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcceEEEec
Q 019222 106 KGSPEYVRKCCEASLKRLDVDYIDLYYQH 134 (344)
Q Consensus 106 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lH 134 (344)
.-+.+.+++.++..++ |+.++|.+|.+.
T Consensus 173 gqt~e~~~~~l~~~~~-l~p~his~y~L~ 200 (390)
T PRK06582 173 GQTLKDWQEELKQAMQ-LATSHISLYQLT 200 (390)
T ss_pred CCCHHHHHHHHHHHHh-cCCCEEEEecCE
Confidence 3478899999999886 899999999775
No 185
>PRK05588 histidinol-phosphatase; Provisional
Probab=32.55 E-value=1.7e+02 Score=26.01 Aligned_cols=105 Identities=16% Similarity=0.234 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHcCCCEEeCccCcCC--C---C---hHHHHHHHHhccCCCCcEEEEeccCcccCCCcccCCCCCHHHHH
Q 019222 42 EVGCSIIKETFNRGITLFDTSDVYGV--D---H---DNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVR 113 (344)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~--~---g---~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~ 113 (344)
....+.++.|.+.|+..+ .+++.-. . . .-+..+- .+++.+.-+|++-.-++. .++ ..
T Consensus 16 ~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~~-~i~~~~~~~I~~GiE~~~------------~~~-~~ 80 (255)
T PRK05588 16 MKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYFN-KYSKYRNNKLLLGIELGM------------EKD-LI 80 (255)
T ss_pred cCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHHH-HHHHHhcCCcceEEEecc------------cCC-CH
Confidence 347789999999999998 7766311 0 0 0112221 112212233433333322 122 24
Q ss_pred HHHHHHHhhcCCCcceEEEecCCCCC----------CCHHH----HHHHHHHHHH-cCceeeEe
Q 019222 114 KCCEASLKRLDVDYIDLYYQHRVDTS----------VSIED----TMGELKKLVE-EGKIKYIG 162 (344)
Q Consensus 114 ~~~~~sL~~L~~d~iDl~~lH~~~~~----------~~~~e----~~~~L~~l~~-~G~ir~iG 162 (344)
..+++.|++...||+ +.-+|+.+.. .+.++ -++.+.++++ .|++..+|
T Consensus 81 ~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~~dvlg 143 (255)
T PRK05588 81 EENKELINKYEFDYV-IGSIHLVDKLDLYLDEFYKDKSKEEAYHIYFENMLKCLEKYDFIDSLG 143 (255)
T ss_pred HHHHHHHhhCCCCeE-EEeEEeeCCCcchHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 566778888888887 7888985421 12233 3466666666 46555444
No 186
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=32.43 E-value=1.5e+02 Score=29.28 Aligned_cols=116 Identities=21% Similarity=0.264 Sum_probs=78.4
Q ss_pred HHHHHHcCCCEEe--CccCc---CC----CChHHHHHHHHhccC---CCCcEEEEeccCcccCCCcc---------cCCC
Q 019222 48 IKETFNRGITLFD--TSDVY---GV----DHDNEIMVGKALKQL---PRDKIQLATKFGCFMLDGVS---------IGVK 106 (344)
Q Consensus 48 l~~A~~~Gi~~~D--tA~~Y---g~----~g~sE~~lG~~l~~~---~R~~~~I~tK~~~~~~~~~~---------~~~~ 106 (344)
++..-+.|+.-+- ||-+| |. +|.-|.++..+-+.. .+.++|+++-+|.....++. ....
T Consensus 109 f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~f~~~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~vE 188 (545)
T TIGR01228 109 FHELEAKGLMMYGQMTAGSWIYIGTQGILQGTYETFAELARQHFGGSLKGKWVLTAGLGGMGGAQPLAVTMNGGVSIAVE 188 (545)
T ss_pred HHHHHHcccccccCccccceEEEcCcceeecHHHHHHHHHHHhcCCCCceeEEEEeCCCccccccHHHHHHcCceEEEEE
Confidence 4555677877654 55443 22 255666655554432 57788999888866544320 0112
Q ss_pred CCHHHHHHHHHHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCceeeEecCCCcHHHHHHHhhc
Q 019222 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV 177 (344)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~ 177 (344)
.++. +.-+|+.+.|+|.+ ..+++|+++..++.+++|+..+||+-..-.+.++++.+.
T Consensus 189 vd~~-------ri~kR~~~gyld~~-------~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r 245 (545)
T TIGR01228 189 VDES-------RIDKRLETKYCDEQ-------TDSLDEALARAEEAKAEGKPISIGLLGNAAEVLPELLKR 245 (545)
T ss_pred ECHH-------HHHHHHhcCcceeE-------cCCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHHHc
Confidence 2333 33467888999963 246899999999999999999999998888888888775
No 187
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=32.20 E-value=3.1e+02 Score=25.25 Aligned_cols=96 Identities=13% Similarity=0.223 Sum_probs=64.7
Q ss_pred HHHHhhcCCCcceEEEecCCCC-----CCCHHHHHHHHHHHHHcCcee-eEecCCC---cHHHHHHHhhcCC-ceEEeee
Q 019222 117 EASLKRLDVDYIDLYYQHRVDT-----SVSIEDTMGELKKLVEEGKIK-YIGLSEA---SADTIRRAHAVHP-ITAVQME 186 (344)
Q Consensus 117 ~~sL~~L~~d~iDl~~lH~~~~-----~~~~~e~~~~L~~l~~~G~ir-~iGvS~~---~~~~l~~~~~~~~-~~~~q~~ 186 (344)
+...+++|. |++.+|-... +.+.+|+.+.||++.+.=++- .||=|.. +++.++++.+... -.|....
T Consensus 157 rk~Vk~fga---dmvTiHlIsTdPki~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEvaEGeRclLaS 233 (403)
T COG2069 157 RKCVKKFGA---DMVTIHLISTDPKIKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVAEGERCLLAS 233 (403)
T ss_pred HHHHHHhCC---ceEEEEeecCCccccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhhcCceEEeec
Confidence 344566775 6777775533 357889999999999887765 4566653 5677877766532 2233333
Q ss_pred ccccccccccchHHHHHHhCCcEEEcccCcc
Q 019222 187 YSLWTREIEDDIIPLCRELGIGIVAYSPLGR 217 (344)
Q Consensus 187 ~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~ 217 (344)
-|+ +.+ ...+.+.+.++|=.|++|+++.-
T Consensus 234 anl-dlD-y~~ia~AA~ky~H~VLswt~~D~ 262 (403)
T COG2069 234 ANL-DLD-YERIAEAALKYDHVVLSWTQMDV 262 (403)
T ss_pred ccc-ccC-HHHHHHHHHhcCceEEEeeccCh
Confidence 333 222 25689999999999999999863
No 188
>PRK05414 urocanate hydratase; Provisional
Probab=32.17 E-value=1.5e+02 Score=29.32 Aligned_cols=116 Identities=18% Similarity=0.249 Sum_probs=78.9
Q ss_pred HHHHHHcCCCEEe--CccCc---CC----CChHHHHHHHHhccC---CCCcEEEEeccCcccCCCcc---------cCCC
Q 019222 48 IKETFNRGITLFD--TSDVY---GV----DHDNEIMVGKALKQL---PRDKIQLATKFGCFMLDGVS---------IGVK 106 (344)
Q Consensus 48 l~~A~~~Gi~~~D--tA~~Y---g~----~g~sE~~lG~~l~~~---~R~~~~I~tK~~~~~~~~~~---------~~~~ 106 (344)
++..-+.|+.-+- ||-+| |. +|.-|.++..+-+.. .+.++|+++-+|.....++. ....
T Consensus 118 f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~a~rk~f~g~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~vE 197 (556)
T PRK05414 118 FNELEAKGLTMYGQMTAGSWIYIGSQGIVQGTYETFAEAARQHFGGDLAGRLVLTAGLGGMGGAQPLAATMAGAVCLAVE 197 (556)
T ss_pred HHHHHHcccccccCccccceeEEcCceeeecHHHHHHHHHHHhcCCCCceeEEEEecCCccccccHHHHHhcCceEEEEE
Confidence 4555677876554 55444 22 255676665554432 57889999988876544321 0112
Q ss_pred CCHHHHHHHHHHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCceeeEecCCCcHHHHHHHhhc
Q 019222 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV 177 (344)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~ 177 (344)
.++. +.-+|+.+.|+|.+ ..+++|+++..++.+++|+..+||+-..-.+.++++.+.
T Consensus 198 vd~~-------ri~kR~~~gyld~~-------~~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~ 254 (556)
T PRK05414 198 VDES-------RIDKRLRTGYLDEK-------ADDLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRR 254 (556)
T ss_pred ECHH-------HHHHHHhCCcceeE-------cCCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHc
Confidence 2333 33468888999963 246899999999999999999999998888888888775
No 189
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=31.90 E-value=4.8e+02 Score=25.19 Aligned_cols=109 Identities=16% Similarity=0.114 Sum_probs=57.7
Q ss_pred cCcCCCChHHHHHHHHhccC----CCCcEEEEeccCcccCCCcccCCCCCHHHHHHHHHHHHhhcC-CCcceEEEecCCC
Q 019222 63 DVYGVDHDNEIMVGKALKQL----PRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLD-VDYIDLYYQHRVD 137 (344)
Q Consensus 63 ~~Yg~~g~sE~~lG~~l~~~----~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~-~d~iDl~~lH~~~ 137 (344)
..||. |+.|-+++++. +.+=++|.|-+....- -+++..-+++.-++.. -.-+.++.+|.|.
T Consensus 61 ~V~Gg----~~~L~~~i~~~~~~~~p~~I~v~~tC~~~li----------GdDi~~v~~~~~~~~~~~~~~~vi~v~tpg 126 (428)
T cd01965 61 AVFGG----EDNLIEALKNLLSRYKPDVIGVLTTCLTETI----------GDDVAGFIKEFRAEGPEPADFPVVYASTPS 126 (428)
T ss_pred eeECc----HHHHHHHHHHHHHhcCCCEEEEECCcchhhc----------CCCHHHHHHHHHhhccCCCCCeEEEeeCCC
Confidence 34665 66777777653 3344666666543321 1223333333222211 0235677888876
Q ss_pred CCCC----HHHHHHHHHHH-------HHcCceeeEecCCC---cHHHHHHHhhcCCceEEee
Q 019222 138 TSVS----IEDTMGELKKL-------VEEGKIKYIGLSEA---SADTIRRAHAVHPITAVQM 185 (344)
Q Consensus 138 ~~~~----~~e~~~~L~~l-------~~~G~ir~iGvS~~---~~~~l~~~~~~~~~~~~q~ 185 (344)
-... .+.++++|-+. ++.++|--||-++. +.++++++++...+.++.+
T Consensus 127 f~g~~~~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~~ 188 (428)
T cd01965 127 FKGSHETGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPIIL 188 (428)
T ss_pred CCCcHHHHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEEe
Confidence 5432 23344444332 23466888876654 3577888888766666554
No 190
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=31.44 E-value=50 Score=29.18 Aligned_cols=75 Identities=13% Similarity=0.240 Sum_probs=43.8
Q ss_pred CCCcccccceeccCcCCCCCCCC--CCHHHHHHHHHH----HHHcCCCEEeCcc--C-cCCCChHHHHHHHHhcc---C-
Q 019222 16 SQGLEVSRLGFGCGGLSGIYNKP--LSHEVGCSIIKE----TFNRGITLFDTSD--V-YGVDHDNEIMVGKALKQ---L- 82 (344)
Q Consensus 16 ~tg~~vs~lg~G~~~~g~~~~~~--~~~~~~~~~l~~----A~~~Gi~~~DtA~--~-Yg~~g~sE~~lG~~l~~---~- 82 (344)
.+|+.+|.+||.+-+- -++|+. ...+++..+++. |.+.|||.|--|. . |.. .+|+...+++.. .
T Consensus 65 etgv~ipSmClSaHRR-fPfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~--~d~eT~~rFi~g~~~a~ 141 (287)
T COG3623 65 ETGVRIPSMCLSAHRR-FPFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEE--ADEETRQRFIEGLKWAV 141 (287)
T ss_pred HhCCCccchhhhhhcc-CCCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeecc--CCHHHHHHHHHHHHHHH
Confidence 5899999999988542 234543 123445555554 5578999999884 2 332 224444444432 1
Q ss_pred ---CCCcEEEEecc
Q 019222 83 ---PRDKIQLATKF 93 (344)
Q Consensus 83 ---~R~~~~I~tK~ 93 (344)
.+..|.++.-+
T Consensus 142 ~lA~~aqV~lAvEi 155 (287)
T COG3623 142 ELAARAQVMLAVEI 155 (287)
T ss_pred HHHHhhccEEEeee
Confidence 55666666554
No 191
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=31.44 E-value=2.3e+02 Score=26.84 Aligned_cols=87 Identities=10% Similarity=0.081 Sum_probs=56.3
Q ss_pred EEecCCCCC-----------CCHHHHHHHHHHHHHcCc----eeeEecC--CCcHHHHHH---HhhcCCceEEeeecccc
Q 019222 131 YYQHRVDTS-----------VSIEDTMGELKKLVEEGK----IKYIGLS--EASADTIRR---AHAVHPITAVQMEYSLW 190 (344)
Q Consensus 131 ~~lH~~~~~-----------~~~~e~~~~L~~l~~~G~----ir~iGvS--~~~~~~l~~---~~~~~~~~~~q~~~n~~ 190 (344)
+-||.++++ .++++++++++++.+.+. |+++=+. |.+.+++++ ++...+..++-++||++
T Consensus 223 iSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~l~~~VnLIPynp~ 302 (356)
T PRK14455 223 ISLHAPNNELRSSLMPINRAYPLEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKGIKCHVNLIPVNPV 302 (356)
T ss_pred eccCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCcEEEEecCcC
Confidence 567877643 346889999998877542 4455443 344455444 44444567888899987
Q ss_pred ccc----cc----cchHHHHHHhCCcEEEcccCcc
Q 019222 191 TRE----IE----DDIIPLCRELGIGIVAYSPLGR 217 (344)
Q Consensus 191 ~~~----~~----~~l~~~~~~~gi~v~a~spl~~ 217 (344)
... +. ....+.++++|+.+......+.
T Consensus 303 ~~~ky~~ps~e~l~~f~~~L~~~gi~v~ir~~~g~ 337 (356)
T PRK14455 303 PERDYVRTPKEDIFAFEDTLKKNGVNCTIRREHGT 337 (356)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCc
Confidence 632 11 3456668899999988777654
No 192
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=31.36 E-value=3.9e+02 Score=24.06 Aligned_cols=53 Identities=13% Similarity=0.019 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHHHhhc------CCCcceEEEecCCCCC-CCHHHHHHHHHHHHHcCce
Q 019222 106 KGSPEYVRKCCEASLKRL------DVDYIDLYYQHRVDTS-VSIEDTMGELKKLVEEGKI 158 (344)
Q Consensus 106 ~~~~~~i~~~~~~sL~~L------~~d~iDl~~lH~~~~~-~~~~e~~~~L~~l~~~G~i 158 (344)
+.+.+.-.+-.+-..+-+ +++.|-|=.+..+... .+..|++++-+.|+++|-+
T Consensus 80 c~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~ 139 (267)
T CHL00162 80 CQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFT 139 (267)
T ss_pred CCCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCCCcccCCChHHHHHHHHHHHHCCCE
Confidence 345555555555555555 6777777666555443 3567999999999999864
No 193
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=31.32 E-value=3e+02 Score=25.91 Aligned_cols=87 Identities=11% Similarity=0.155 Sum_probs=55.9
Q ss_pred EEecCCCCC-----------CCHHHHHHHHHHHHHc-Cc---eeeEecC--CCcHHHH---HHHhhcCCceEEeeecccc
Q 019222 131 YYQHRVDTS-----------VSIEDTMGELKKLVEE-GK---IKYIGLS--EASADTI---RRAHAVHPITAVQMEYSLW 190 (344)
Q Consensus 131 ~~lH~~~~~-----------~~~~e~~~~L~~l~~~-G~---ir~iGvS--~~~~~~l---~~~~~~~~~~~~q~~~n~~ 190 (344)
+-||.|+.+ .+++++++++.++.++ |+ ++++=+. |.+.+++ .+++...+..++.++||..
T Consensus 216 iSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~ieyvLI~GvNDs~eda~~L~~ll~~l~~kVnLIPyN~~ 295 (342)
T PRK14465 216 ISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRRITFEYVMIPGVNMGRENANKLVKIARSLDCKINVIPLNTE 295 (342)
T ss_pred EEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCEEEEEEEEECCccCCHHHHHHHHHHHhhCCCcEEEEccCCC
Confidence 678988643 3568899999977644 33 3355443 3444554 4444445578899999984
Q ss_pred ccc---cc----cchHHHHHHhCCcEEEcccCcc
Q 019222 191 TRE---IE----DDIIPLCRELGIGIVAYSPLGR 217 (344)
Q Consensus 191 ~~~---~~----~~l~~~~~~~gi~v~a~spl~~ 217 (344)
... +. ....+..+++||.+......+.
T Consensus 296 ~~~~~~ps~e~i~~F~~~L~~~Gi~v~~R~~~G~ 329 (342)
T PRK14465 296 FFGWRRPTDDEVAEFIMLLEPAGVPILNRRSPGK 329 (342)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 321 11 3456667788999998877764
No 194
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=31.05 E-value=4.4e+02 Score=24.83 Aligned_cols=88 Identities=11% Similarity=0.068 Sum_probs=57.0
Q ss_pred EEEecCCCCC-----------CCHHHHHHHHHHHHHcCc----eeeEecC--CCcHHHHH---HHhhcCCceEEeeeccc
Q 019222 130 LYYQHRVDTS-----------VSIEDTMGELKKLVEEGK----IKYIGLS--EASADTIR---RAHAVHPITAVQMEYSL 189 (344)
Q Consensus 130 l~~lH~~~~~-----------~~~~e~~~~L~~l~~~G~----ir~iGvS--~~~~~~l~---~~~~~~~~~~~q~~~n~ 189 (344)
.+-||.|+.+ .+++++++++.+..++.. +-|+=+. |.+.+++. +++...+..++-++||+
T Consensus 210 avSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~Li~gvND~~e~a~~L~~ll~~~~~~VNLIp~Np 289 (345)
T PRK14466 210 AISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYIVFKGLNDSLKHAKELVKLLRGIDCRVNLIRFHA 289 (345)
T ss_pred EEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEEEeCCCCCCHHHHHHHHHHHcCCCceEEEEecCC
Confidence 4788988532 357899999998654432 2234333 45555544 44444567899999997
Q ss_pred cccc----cc----cchHHHHHHhCCcEEEcccCcc
Q 019222 190 WTRE----IE----DDIIPLCRELGIGIVAYSPLGR 217 (344)
Q Consensus 190 ~~~~----~~----~~l~~~~~~~gi~v~a~spl~~ 217 (344)
.... +. ....+..+++||.+......+.
T Consensus 290 ~~~~~~~~~s~~~~~~F~~~L~~~gi~~tvR~s~G~ 325 (345)
T PRK14466 290 IPGVDLEGSDMARMEAFRDYLTSHGVFTTIRASRGE 325 (345)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 5431 11 3456667799999998877764
No 195
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=31.01 E-value=3.4e+02 Score=25.89 Aligned_cols=97 Identities=16% Similarity=0.337 Sum_probs=0.0
Q ss_pred HhhcCCCcceEEE---ecCCCCC-----------CCHHHHHHHHHHHHHcCc-------eeeEecC--CCcHHHHHHHhh
Q 019222 120 LKRLDVDYIDLYY---QHRVDTS-----------VSIEDTMGELKKLVEEGK-------IKYIGLS--EASADTIRRAHA 176 (344)
Q Consensus 120 L~~L~~d~iDl~~---lH~~~~~-----------~~~~e~~~~L~~l~~~G~-------ir~iGvS--~~~~~~l~~~~~ 176 (344)
+++|. ++.|+.+ ||.++++ .+++++++++.+...+-. ||++=|. |.+.++++++.+
T Consensus 207 i~~l~-~~~d~~LaiSLha~d~e~R~~lmPin~~~~l~~ll~a~~~y~~~~~~~~rrI~irypLIpGvNDs~e~a~~La~ 285 (372)
T PRK11194 207 LDKLG-DMIDVALAISLHAPNDELRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTVEYVMLDHVNDGTEHAHQLAE 285 (372)
T ss_pred HHHHH-hccCeEEEeeccCCCHHHHHHhcCCcccccHHHHHHHHHHHHHhcccCCCeEEEEEEeECCCCCCHHHHHHHHH
Q ss_pred c---CCceEEeeeccccccccc--------cchHHHHHHhCCcEEEcccCcc
Q 019222 177 V---HPITAVQMEYSLWTREIE--------DDIIPLCRELGIGIVAYSPLGR 217 (344)
Q Consensus 177 ~---~~~~~~q~~~n~~~~~~~--------~~l~~~~~~~gi~v~a~spl~~ 217 (344)
. .+..++-++||.+..... ..+.+..+++|+.+......+.
T Consensus 286 ll~~l~~~VnLIPYN~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~~G~ 337 (372)
T PRK11194 286 LLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGD 337 (372)
T ss_pred HHhcCCceEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEecCCCC
No 196
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=31.01 E-value=5.2e+02 Score=25.33 Aligned_cols=113 Identities=17% Similarity=0.165 Sum_probs=59.7
Q ss_pred ccCcCCCChHHHHHHHHhccC----C-CCcEEEEeccCcccCCCcccCCCCCHHHHHHHHHHHHh-hcCCCcceEEEecC
Q 019222 62 SDVYGVDHDNEIMVGKALKQL----P-RDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLK-RLDVDYIDLYYQHR 135 (344)
Q Consensus 62 A~~Yg~~g~sE~~lG~~l~~~----~-R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~-~L~~d~iDl~~lH~ 135 (344)
.-.||. |+.|-++|++. + .+=++|.|-+...--+ -+.+.+.+.+++-++ ...--.+.++.+|.
T Consensus 65 d~VfGG----~~~L~~~I~~~~~~~~~p~~I~V~tTC~~eiIG-------DDi~~vv~~~~~~~~~e~~~~~~~vi~v~t 133 (454)
T cd01973 65 SAVFGG----AKRVEEGVLVLARRYPDLRVIPIITTCSTEIIG-------DDIEGVIRKLNEALKEEFPDREVHLIPVHT 133 (454)
T ss_pred ceEECc----HHHHHHHHHHHHHhcCCCCEEEEECCchHhhhc-------cCHHHHHHHHHhhhhhccCCCCCeEEEeeC
Confidence 346786 77777777653 2 2336777766433211 133333333333221 11101478899998
Q ss_pred CCCCCCH----HHHHHHHHH-HHH----cCceeeEecCC--CcHHHHHHHhhcCCceEEee
Q 019222 136 VDTSVSI----EDTMGELKK-LVE----EGKIKYIGLSE--ASADTIRRAHAVHPITAVQM 185 (344)
Q Consensus 136 ~~~~~~~----~e~~~~L~~-l~~----~G~ir~iGvS~--~~~~~l~~~~~~~~~~~~q~ 185 (344)
|+-.... +.+++++-+ +.. +++|--||-.+ .+.++++++++...+.++.+
T Consensus 134 pgF~Gs~~~G~~~a~~ali~~~~~~~~~~~~VNii~~~~~~~D~~ei~~lL~~~Gl~v~~~ 194 (454)
T cd01973 134 PSFKGSMVTGYDEAVRSVVKTIAKKGAPSGKLNVFTGWVNPGDVVELKHYLSEMDVEANIL 194 (454)
T ss_pred CCcCCCHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCEEEe
Confidence 8765432 223333322 222 46788887443 34567788888777776654
No 197
>PLN02444 HMP-P synthase
Probab=30.95 E-value=2.6e+02 Score=28.17 Aligned_cols=88 Identities=14% Similarity=0.196 Sum_probs=55.6
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCceeeEecCCCcHHHHHHHhhcCCceEEee
Q 019222 106 KGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQM 185 (344)
Q Consensus 106 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~ 185 (344)
+.+.+.+.+.+++..+ +=+|.+.||.-- ..+.++.++ + |..||-.-....+...+-...
T Consensus 296 ~lt~d~~~d~ieeQae----qGVDfmTIH~Gv-------~~~~v~~~~--~--R~tgIVSRGGSi~a~Wml~~~------ 354 (642)
T PLN02444 296 NLTWEVFRETLIEQAE----QGVDYFTIHAGV-------LLRYIPLTA--K--RMTGIVSRGGSIHAKWCLAYH------ 354 (642)
T ss_pred hCCHHHHHHHHHHHHH----hCCCEEEEChhh-------HHHHHHHHh--C--cccCceeCCcHHHHHHHHHcC------
Confidence 5677777777776665 455778888641 344444554 3 677887776666655543221
Q ss_pred eccccccccccchHHHHHHhCCcEEEcccCcccc
Q 019222 186 EYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGF 219 (344)
Q Consensus 186 ~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~ 219 (344)
.=|++...+ .++++.|++++|.+ +|+.|+
T Consensus 355 kENPlYe~F-D~ileI~k~YDVtl----SLGDGL 383 (642)
T PLN02444 355 KENFAYEHW-DDILDICNQYDIAL----SIGDGL 383 (642)
T ss_pred CcCchHHHH-HHHHHHHHHhCeee----eccCCc
Confidence 224444433 57999999999998 456554
No 198
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=30.86 E-value=3.8e+02 Score=24.60 Aligned_cols=56 Identities=18% Similarity=0.156 Sum_probs=40.2
Q ss_pred HHHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCceeeEecCCCcHHHHHHH
Q 019222 116 CEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRA 174 (344)
Q Consensus 116 ~~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~ 174 (344)
..+.+...+...=|+++.-.....+ .+++.+++.+++.| ++-|++++.....+.+.
T Consensus 116 ~~~~l~a~~l~~~DvvI~IS~SG~T--~~vi~al~~Ak~~G-a~~IaIT~~~~s~La~~ 171 (296)
T PRK12570 116 GAQDLKAIGLTADDVVVGIAASGRT--PYVIGALEYAKQIG-ATTIALSCNPDSPIAKI 171 (296)
T ss_pred HHHHHHHcCCCCCCEEEEEeCCCCC--HHHHHHHHHHHHCC-CeEEEEECCCCChhHHh
Confidence 3344555665566999887765544 35899999999998 67799998876666554
No 199
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=30.83 E-value=4.4e+02 Score=24.41 Aligned_cols=97 Identities=15% Similarity=0.199 Sum_probs=56.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCccCcCC-C---ChHHHHHHHHhccCC-CCcEEEEeccCcccCCCcccCCCCCHHHHH
Q 019222 39 LSHEVGCSIIKETFNRGITLFDTSDVYGV-D---HDNEIMVGKALKQLP-RDKIQLATKFGCFMLDGVSIGVKGSPEYVR 113 (344)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~-~---g~sE~~lG~~l~~~~-R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~ 113 (344)
++.++...+++.+.+.|+..|--+ |. + ..-.+++.. +++.. -.++.|+|-... +.
T Consensus 45 ls~eei~~li~~~~~~Gv~~I~~t---GGEPllr~dl~~li~~-i~~~~~l~~i~itTNG~l----------------l~ 104 (329)
T PRK13361 45 LSLEELAWLAQAFTELGVRKIRLT---GGEPLVRRGCDQLVAR-LGKLPGLEELSLTTNGSR----------------LA 104 (329)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE---CcCCCccccHHHHHHH-HHhCCCCceEEEEeChhH----------------HH
Confidence 578889999999999999888532 32 0 011222322 22211 224555554211 22
Q ss_pred HHHHHHHhhcCCCcceEEEecCCCCC--------CCHHHHHHHHHHHHHcCc
Q 019222 114 KCCEASLKRLDVDYIDLYYQHRVDTS--------VSIEDTMGELKKLVEEGK 157 (344)
Q Consensus 114 ~~~~~sL~~L~~d~iDl~~lH~~~~~--------~~~~e~~~~L~~l~~~G~ 157 (344)
+ .-+.|...|+++|. +-|+..+++ ..++.+++.++.+++.|.
T Consensus 105 ~-~~~~L~~aGl~~v~-ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi 154 (329)
T PRK13361 105 R-FAAELADAGLKRLN-ISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGF 154 (329)
T ss_pred H-HHHHHHHcCCCeEE-EEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCC
Confidence 2 33456667887776 355555432 346788888888888774
No 200
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=30.78 E-value=2.7e+02 Score=23.76 Aligned_cols=99 Identities=19% Similarity=0.209 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhhcCCCc--ceEEEecCCCCCCCHHHHHHHHHHHHHcCceeeEecCCCcH--HHHHHHhhcCCceEEee
Q 019222 110 EYVRKCCEASLKRLDVDY--IDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASA--DTIRRAHAVHPITAVQM 185 (344)
Q Consensus 110 ~~i~~~~~~sL~~L~~d~--iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir~iGvS~~~~--~~l~~~~~~~~~~~~q~ 185 (344)
......+.+.+++.+..- +=+ -+.............+.++.|++.|- .+.+.++.. ..+.. +...+++.+-+
T Consensus 99 ~~~~~~l~~~l~~~~~~~~~lvl-ei~e~~~~~~~~~~~~~i~~l~~~G~--~ialddfg~~~~~~~~-l~~l~~d~iKl 174 (241)
T smart00052 99 PDLVPRVLELLEETGLPPQRLEL-EITESVLLDDDESAVATLQRLRELGV--RIALDDFGTGYSSLSY-LKRLPVDLLKI 174 (241)
T ss_pred chHHHHHHHHHHHcCCCHHHEEE-EEeChhhhcChHHHHHHHHHHHHCCC--EEEEeCCCCcHHHHHH-HHhCCCCeEEE
Confidence 334566777777766543 322 22221222334455689999999997 456666532 22333 33345666666
Q ss_pred eccccccc--------cccchHHHHHHhCCcEEEc
Q 019222 186 EYSLWTRE--------IEDDIIPLCRELGIGIVAY 212 (344)
Q Consensus 186 ~~n~~~~~--------~~~~l~~~~~~~gi~v~a~ 212 (344)
..++.... .-..++..|+..|+.+++-
T Consensus 175 d~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~ 209 (241)
T smart00052 175 DKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAE 209 (241)
T ss_pred CHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEe
Confidence 65544321 1146789999999999885
No 201
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=30.57 E-value=3.9e+02 Score=23.73 Aligned_cols=51 Identities=18% Similarity=0.081 Sum_probs=31.0
Q ss_pred cchHHHHHHhCCcEEEcccCcccccCCCCCCCCCCchhhhhcCCCCCchhhHHHHHHHHHHHHHHHHhCC
Q 019222 196 DDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAMHPRFSGENLEKNKLLYTRLETLAAKYGC 265 (344)
Q Consensus 196 ~~l~~~~~~~gi~v~a~spl~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~ 265 (344)
...++.|+..|+.++...+... . ... -....++...+.+..+.++|+++|+
T Consensus 97 ~~~i~~a~~lG~~~v~~~~~~~--~---~~~--------------~~~~~~~~~~~~l~~l~~~a~~~gv 147 (284)
T PRK13210 97 KKAIRLAQDLGIRTIQLAGYDV--Y---YEE--------------KSEETRQRFIEGLAWAVEQAAAAQV 147 (284)
T ss_pred HHHHHHHHHhCCCEEEECCccc--c---ccc--------------ccHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5689999999999987521110 0 000 0112344555667778888888876
No 202
>TIGR00035 asp_race aspartate racemase.
Probab=30.31 E-value=2.1e+02 Score=24.99 Aligned_cols=63 Identities=14% Similarity=0.098 Sum_probs=45.3
Q ss_pred CCHHHHHHHHHHHHhhcCCCcceEEEecCCCCC------------CCHHHHHHHHHHHHHcCceeeEecCCCcHHH
Q 019222 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS------------VSIEDTMGELKKLVEEGKIKYIGLSEASADT 170 (344)
Q Consensus 107 ~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~------------~~~~e~~~~L~~l~~~G~ir~iGvS~~~~~~ 170 (344)
.+.+..++-++.+-.+.+-++++.+.+++|+-. .....+.+.++.|.+.| +..|-+...+...
T Consensus 14 at~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g-~d~iviaCNTah~ 88 (229)
T TIGR00035 14 ATAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAG-ADFIIMPCNTAHK 88 (229)
T ss_pred HHHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcC-CCEEEECCccHHH
Confidence 366777777888878899999999999998431 12334666777776655 6888887765544
No 203
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=30.21 E-value=3.3e+02 Score=25.70 Aligned_cols=94 Identities=14% Similarity=0.206 Sum_probs=61.8
Q ss_pred CCCcEEEEeccCcccCC------CcccCCCCCHHHHHHHHHHHHhhcCCC----cceEEEecCCCCCCCHHHHHHHHHHH
Q 019222 83 PRDKIQLATKFGCFMLD------GVSIGVKGSPEYVRKCCEASLKRLDVD----YIDLYYQHRVDTSVSIEDTMGELKKL 152 (344)
Q Consensus 83 ~R~~~~I~tK~~~~~~~------~~~~~~~~~~~~i~~~~~~sL~~L~~d----~iDl~~lH~~~~~~~~~e~~~~L~~l 152 (344)
.|.-+.|+|-+|..-.. .+....+.+...|..|+....++++.. --.++++---++...++.+..+++-+
T Consensus 99 ~r~tlCVSsQvGC~~~C~FCaTg~~G~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MGMGEPl~N~dnV~~a~~i~ 178 (349)
T COG0820 99 DRNTLCVSSQVGCPVGCTFCATGQGGLNRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMGMGEPLLNLDNVVKALEII 178 (349)
T ss_pred CCceEEEecCCCcCCCCCeeccccccceeccCHHHHHHHHHHHHHhcCccccceeeeEEEecCCchhhhHHHHHHHHHhh
Confidence 56668899988765432 123446889999999999999999864 22333443334444567788888888
Q ss_pred HHc-Cc---eeeEecCCCc-HHHHHHHhh
Q 019222 153 VEE-GK---IKYIGLSEAS-ADTIRRAHA 176 (344)
Q Consensus 153 ~~~-G~---ir~iGvS~~~-~~~l~~~~~ 176 (344)
.+. |. .|.|-||+-. ...+.++.+
T Consensus 179 ~~~~G~~ls~R~iTvSTsGi~~~I~~l~~ 207 (349)
T COG0820 179 NDDEGLGLSKRRITVSTSGIVPRIRKLAD 207 (349)
T ss_pred cCcccccccceEEEEecCCCchhHHHHHh
Confidence 733 32 2677788765 445666554
No 204
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=30.17 E-value=8.4e+02 Score=27.48 Aligned_cols=168 Identities=16% Similarity=0.151 Sum_probs=88.3
Q ss_pred CHHHHHHHHHHHHHcC-CCEEeCccCcCCCChHHHHHHHHhccC-CCCc-----EEEEeccCcccCC--------CcccC
Q 019222 40 SHEVGCSIIKETFNRG-ITLFDTSDVYGVDHDNEIMVGKALKQL-PRDK-----IQLATKFGCFMLD--------GVSIG 104 (344)
Q Consensus 40 ~~~~~~~~l~~A~~~G-i~~~DtA~~Yg~~g~sE~~lG~~l~~~-~R~~-----~~I~tK~~~~~~~--------~~~~~ 104 (344)
+.++..+.+...++.| +|.|= -+.|.+..=-+.|.++++.. +|.. ..++|-.....-. +++..
T Consensus 290 tPe~~a~~~~~~~~~G~v~IIG--GCCGTtPeHI~ala~~l~~~~p~~~~~~~~~~~~S~~~~~~~~~~~~~~~IGER~N 367 (1229)
T PRK09490 290 TPEEMAAQIGEFAESGFLNIVG--GCCGTTPEHIAAIAEAVAGLPPRKLPEIPVACRLSGLEPLNIDDDSLFVNVGERTN 367 (1229)
T ss_pred CHHHHHHHHHHHHHcCCCCEEE--ecCCCCHHHHHHHHHHHhcCCCCCCCCcCcceeeecceEEeecCCCcccccccccc
Confidence 5677788888889999 89984 34454111123455666543 3321 1122221111000 00100
Q ss_pred -----------CCCCHHHHHHHHHHHHhhcCCCcceEEEecCCCC-CCCHHHHHHHHHHHHHcC-ce--eeEecCCCcHH
Q 019222 105 -----------VKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDT-SVSIEDTMGELKKLVEEG-KI--KYIGLSEASAD 169 (344)
Q Consensus 105 -----------~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~-~~~~~e~~~~L~~l~~~G-~i--r~iGvS~~~~~ 169 (344)
...+.+.+.+..++. ..-|-+.||+- ++. ..+-++.++.+-.+++.- .+ --|-|-++.++
T Consensus 368 ~~G~k~~~~~i~~~d~~~al~~A~~q-ve~GA~iIDVn----~g~~~id~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~ 442 (1229)
T PRK09490 368 VTGSAKFARLIKEEDYDEALDVARQQ-VENGAQIIDIN----MDEGMLDSEAAMVRFLNLIASEPDIARVPIMIDSSKWE 442 (1229)
T ss_pred hhccHHHHHHHHcCCHHHHHHHHHHH-HHCCCCEEEEC----CCCCCCCHHHHHHHHHHHHHhhhccCCceEEEeCCcHH
Confidence 011222333322222 35588999994 332 234445555444444431 11 23677788899
Q ss_pred HHHHHhhcCCceEEeeecccccccc-ccchHHHHHHhCCcEEEccc
Q 019222 170 TIRRAHAVHPITAVQMEYSLWTREI-EDDIIPLCRELGIGIVAYSP 214 (344)
Q Consensus 170 ~l~~~~~~~~~~~~q~~~n~~~~~~-~~~l~~~~~~~gi~v~a~sp 214 (344)
.++.+++..+=..+-+..|....+. -..+++.|+++|..++.+.-
T Consensus 443 ViEaaLk~~~G~~IINSIs~~~~~~~~~~~~~l~~kyga~vV~m~~ 488 (1229)
T PRK09490 443 VIEAGLKCIQGKGIVNSISLKEGEEKFIEHARLVRRYGAAVVVMAF 488 (1229)
T ss_pred HHHHHHhhcCCCCEEEeCCCCCCCccHHHHHHHHHHhCCCEEEEec
Confidence 9999988743334445555543211 13689999999999998753
No 205
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=29.93 E-value=4.8e+02 Score=24.58 Aligned_cols=152 Identities=10% Similarity=0.016 Sum_probs=86.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCccCcCCCChHH--HHHHHHhccCCCCcEEEEeccCcccCCCcccCCCCCHHHHHHHHH
Q 019222 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNE--IMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCE 117 (344)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE--~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 117 (344)
+.++..+.++.+.+.|++.|=.- .++. ..-+ ...=+++++.--+++.|..=... .++.+...
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik-~~~~-~~~~~di~~i~~vR~~~G~~~~l~vDan~----------~~~~~~A~---- 206 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLH-PWGP-GVVRRDLKACLAVREAVGPDMRLMHDGAH----------WYSRADAL---- 206 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe-cCCc-hhHHHHHHHHHHHHHHhCCCCeEEEECCC----------CcCHHHHH----
Confidence 55677778888899999988542 2221 1001 11122333321123333322211 12433222
Q ss_pred HHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCcee-eEecCCCc-HHHHHHHhhcCCceEEeeecccccc-cc
Q 019222 118 ASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEAS-ADTIRRAHAVHPITAVQMEYSLWTR-EI 194 (344)
Q Consensus 118 ~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir-~iGvS~~~-~~~l~~~~~~~~~~~~q~~~n~~~~-~~ 194 (344)
+.+++|. ..++.++-.|-+.. -++.+.+|+++-.+. +.|=+-++ ..++.++++..-++++|+..+..-. ..
T Consensus 207 ~~~~~l~--~~~l~~iEeP~~~~----d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~ 280 (368)
T cd03329 207 RLGRALE--ELGFFWYEDPLREA----SISSYRWLAEKLDIPILGTEHSRGALESRADWVLAGATDFLRADVNLVGGITG 280 (368)
T ss_pred HHHHHhh--hcCCCeEeCCCCch----hHHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHhCCCCEEecCccccCCHHH
Confidence 2233332 23555666664432 246677888875554 23444466 8888888888888999998776432 11
Q ss_pred ccchHHHHHHhCCcEEEcc
Q 019222 195 EDDIIPLCRELGIGIVAYS 213 (344)
Q Consensus 195 ~~~l~~~~~~~gi~v~a~s 213 (344)
...+..+|+++|+.++.++
T Consensus 281 ~~~ia~~a~~~gi~~~~h~ 299 (368)
T cd03329 281 AMKTAHLAEAFGLDVELHG 299 (368)
T ss_pred HHHHHHHHHHcCCEEEEEC
Confidence 3578999999999997654
No 206
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=29.89 E-value=3.8e+02 Score=23.42 Aligned_cols=136 Identities=13% Similarity=0.162 Sum_probs=72.4
Q ss_pred HHHHHHcCCCEEeC-ccCcCCCChHHHHHHHHhccCCCCcEEEEeccCcccCCCcccCCCCCHHHHHHHHHHHHhhcCCC
Q 019222 48 IKETFNRGITLFDT-SDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVD 126 (344)
Q Consensus 48 l~~A~~~Gi~~~Dt-A~~Yg~~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d 126 (344)
|+...+. .+.++. +..|+. -+++.+.+|.++ ..+++..+.|+.....-.... ....+.+.+.+-+.++-|+ +
T Consensus 12 L~~Ya~~-F~~VEvn~TFY~~--P~~~t~~~W~~~-~p~~F~F~vK~~~~iTH~~~l--~~~~~~~~~~F~~~~~~L~-~ 84 (230)
T PF01904_consen 12 LAYYARH-FNTVEVNSTFYRI--PSPETVARWREQ-TPEGFRFSVKAPQLITHERRL--RDCAEELWRRFLEALEPLG-E 84 (230)
T ss_dssp HHHHCCT--SEEEE-HHCCSS--S-HHHHHHHHCT-S-TT-EEEEE--CCCCCCCHC--GSSHHHHHHHHHHHCHHHH-T
T ss_pred HHHHHHh-CCeEEECcccCCC--CCHHHHHHHHhh-CCCCeEEEEeccHHheecccc--cccHHHHHHHHHHHHHHHh-h
Confidence 4444444 566654 446775 357789999887 668899999987543211110 1235666456666999998 9
Q ss_pred cceEEEecCCCCCCCHHHHHHHHHHHHHcCceeeEecCCCcHHHHHHHhhcCCceEEeeeccccccccccchHHHHHHhC
Q 019222 127 YIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELG 206 (344)
Q Consensus 127 ~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~g 206 (344)
.+..+++.-|..-....+.++.|..+.+.=. ..-..++.+.---+. ..++.++++++|
T Consensus 85 klg~iL~Q~Ppsf~~~~~~~~~l~~~l~~~~-------------------~~~~~avE~R~~sW~---~~~~~~~l~~~~ 142 (230)
T PF01904_consen 85 KLGPILFQFPPSFRFTPENLERLDAFLDRLP-------------------RGFRYAVEFRHPSWF---TEEVFELLREHG 142 (230)
T ss_dssp -EEEEEEE--TT--S-HHHHHHHHHHHHHTT--------------------TS-EEEE--BGGGG---CHHHHHHHHHTT
T ss_pred cceEEEEEcCCCcCCCHHHHHHHHHHHhhcc-------------------cccceEEecCCcchh---hHHHHHHHHHcC
Confidence 9999999988654444556666666555422 011123333222111 246889999999
Q ss_pred CcEEEc
Q 019222 207 IGIVAY 212 (344)
Q Consensus 207 i~v~a~ 212 (344)
+..+.-
T Consensus 143 ~~~v~~ 148 (230)
T PF01904_consen 143 VALVIA 148 (230)
T ss_dssp -EEEEE
T ss_pred CEEEEe
Confidence 887653
No 207
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=29.72 E-value=2.9e+02 Score=21.95 Aligned_cols=62 Identities=18% Similarity=0.171 Sum_probs=44.0
Q ss_pred CCCcEEEEeccCcccCCCcccCCCCCHHHHHHHHHHHHhhcCC----CcceEEEecCCCCC-CCHHHHHHHHHHHHH
Q 019222 83 PRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDV----DYIDLYYQHRVDTS-VSIEDTMGELKKLVE 154 (344)
Q Consensus 83 ~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~----d~iDl~~lH~~~~~-~~~~e~~~~L~~l~~ 154 (344)
.|=-+.|+-|+|.. ..+..|++.+.++++.+.. ...|++++-.+... .++.++.+.|+.+.+
T Consensus 47 ~RvG~~VSKKvG~A----------V~RNRiKR~lRE~fR~~~~~~~~~g~DiVivar~~~~~~~~~~l~~~L~~~l~ 113 (129)
T PRK01313 47 PRVGFTVTKKNGNA----------VERNRIRRRLKEAVRLHAGFDMAPGTDYVIVARRDALNAPFSQLTEELSRRIE 113 (129)
T ss_pred cEEEEEEecccCcc----------hHHHHHHHHHHHHHHHhchhccCCCceEEEEECcccccCCHHHHHHHHHHHHH
Confidence 45556677776643 3788899999999887753 45799999988643 466677777776654
No 208
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=29.66 E-value=2.6e+02 Score=27.06 Aligned_cols=104 Identities=13% Similarity=0.225 Sum_probs=71.5
Q ss_pred HHHHHHHHcCCCEEeCccCcCCCChHHHHHHHHhccCCCCcEEEEeccCcccCCCcccCCCCCHHHHHHHHHHHHhhcCC
Q 019222 46 SIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDV 125 (344)
Q Consensus 46 ~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~ 125 (344)
.+|+++++.|- +-..=.||.+|.--..|.+.|......+|.-.+-+ ..+.+.++..++++.+.++.
T Consensus 37 ~~lrr~v~~~~--l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv------------~~gvkdlr~i~e~a~~~~~~ 102 (436)
T COG2256 37 KPLRRAVEAGH--LHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV------------TSGVKDLREIIEEARKNRLL 102 (436)
T ss_pred chHHHHHhcCC--CceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc------------cccHHHHHHHHHHHHHHHhc
Confidence 57889998763 22222689888888889999976433333222221 23678899999999888876
Q ss_pred CcceEEEe---cCCCCCCCHHHHHHHHHHHHHcCceeeEecCCCcH
Q 019222 126 DYIDLYYQ---HRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASA 168 (344)
Q Consensus 126 d~iDl~~l---H~~~~~~~~~e~~~~L~~l~~~G~ir~iGvS~~~~ 168 (344)
.+=-+++| |+.+.. .=++|--.++.|.|-.||.++-++
T Consensus 103 gr~tiLflDEIHRfnK~-----QQD~lLp~vE~G~iilIGATTENP 143 (436)
T COG2256 103 GRRTILFLDEIHRFNKA-----QQDALLPHVENGTIILIGATTENP 143 (436)
T ss_pred CCceEEEEehhhhcChh-----hhhhhhhhhcCCeEEEEeccCCCC
Confidence 55556665 555432 345677888999999999997654
No 209
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=29.61 E-value=3.4e+02 Score=25.16 Aligned_cols=91 Identities=20% Similarity=0.204 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhhcCCCcceEEEecCCCCCCCHH-HHHHHHHHHHHcCceeeEecC--CCcHHHHHHHhhcCCceEEee
Q 019222 109 PEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIE-DTMGELKKLVEEGKIKYIGLS--EASADTIRRAHAVHPITAVQM 185 (344)
Q Consensus 109 ~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~-e~~~~L~~l~~~G~ir~iGvS--~~~~~~l~~~~~~~~~~~~q~ 185 (344)
.+.+.+.++...++||...+.+.+--...+...+. .+-+.|++|.++| ++.|=|- .|-.+.++.+.+
T Consensus 206 ~~~~~~t~~~i~~~l~~~~~~~~fQS~~g~~~WL~P~~~~~l~~l~~~G-~~~V~v~p~gFv~D~lETl~e--------- 275 (316)
T PF00762_consen 206 PAQCEETARLIAERLGLPEWRLAFQSRFGPGEWLGPSTEDVLEELAKEG-VKRVVVVPPGFVSDCLETLYE--------- 275 (316)
T ss_dssp HHHHHHHHHHHHHHTTTSSEEEEEES-SSSS-BSSSBHHHHHHHHHHCT--SEEEEEETT-SSSSHHHHCC---------
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEECCCCCCCCccccHHHHHHHHHhcC-CCeEEEECCccccccHhHHHH---------
Confidence 56688888888899987765555443233322111 4678889999999 4433221 122233333321
Q ss_pred eccccccccccchHHHHHHhCCcEEEcccCcc
Q 019222 186 EYSLWTREIEDDIIPLCRELGIGIVAYSPLGR 217 (344)
Q Consensus 186 ~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~ 217 (344)
.+.+..+.+.++|+.-..+-|.-+
T Consensus 276 --------idie~re~~~~~G~~~~~~ip~lN 299 (316)
T PF00762_consen 276 --------IDIEYRELAEEAGGEEFVRIPCLN 299 (316)
T ss_dssp --------CCCHHHHHHHHHTCCEEEE---ST
T ss_pred --------HHHHHHHHHHHcCCceEEEeCCCC
Confidence 123568899999997777766553
No 210
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=29.48 E-value=1.8e+02 Score=28.46 Aligned_cols=16 Identities=0% Similarity=-0.022 Sum_probs=9.9
Q ss_pred CcEEEcccCcccccCC
Q 019222 207 IGIVAYSPLGRGFFAG 222 (344)
Q Consensus 207 i~v~a~spl~~G~l~~ 222 (344)
..+++.+|=|.|.+.+
T Consensus 317 ~~~iglG~gA~s~~~~ 332 (453)
T PRK09249 317 CDLIGLGVSAISRIGD 332 (453)
T ss_pred CeEEEECcCcccCCCC
Confidence 4566766666666544
No 211
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=29.45 E-value=2.7e+02 Score=26.06 Aligned_cols=147 Identities=19% Similarity=0.204 Sum_probs=81.2
Q ss_pred CCCCCceecCCCCcccccceeccCcCCCCCCCCCCHHHHHHHHHHHHHcCCC--EEeCccCcCCCChHHHHHHHHhccCC
Q 019222 6 QVHVPRVKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGIT--LFDTSDVYGVDHDNEIMVGKALKQLP 83 (344)
Q Consensus 6 ~~~m~~~~lg~tg~~vs~lg~G~~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~--~~DtA~~Yg~~g~sE~~lG~~l~~~~ 83 (344)
+.+|++..++ .|..|-.+|+|. +|. -.++.|-..|.+ .||+++ .+.|+. ++...
T Consensus 171 YspLk~~g~~-pG~~vgI~GlGG--LGh------------~aVq~AKAMG~rV~vis~~~-----~kkeea----~~~LG 226 (360)
T KOG0023|consen 171 YSPLKRSGLG-PGKWVGIVGLGG--LGH------------MAVQYAKAMGMRVTVISTSS-----KKKEEA----IKSLG 226 (360)
T ss_pred eehhHHcCCC-CCcEEEEecCcc--cch------------HHHHHHHHhCcEEEEEeCCc-----hhHHHH----HHhcC
Confidence 4567777775 788888888886 431 235666667766 566553 124543 44434
Q ss_pred CCcEEEEeccCcccCCCcccCCCCCHHHHHHHHHHHHhhcCCCcceEEEecCCC--CCCCHHHHHHHHHHHHHcCceeeE
Q 019222 84 RDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVD--TSVSIEDTMGELKKLVEEGKIKYI 161 (344)
Q Consensus 84 R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~--~~~~~~e~~~~L~~l~~~G~ir~i 161 (344)
-|.+++++| +++ +.+++..++.- .+|... ...+ .-..++-||..|++-.+
T Consensus 227 Ad~fv~~~~---------------d~d-~~~~~~~~~dg---------~~~~v~~~a~~~---~~~~~~~lk~~Gt~V~v 278 (360)
T KOG0023|consen 227 ADVFVDSTE---------------DPD-IMKAIMKTTDG---------GIDTVSNLAEHA---LEPLLGLLKVNGTLVLV 278 (360)
T ss_pred cceeEEecC---------------CHH-HHHHHHHhhcC---------cceeeeeccccc---hHHHHHHhhcCCEEEEE
Confidence 455555555 222 23344443321 233222 2223 33456778899999999
Q ss_pred ecCCCcHHHHHHHhhcCC--ceEEeeeccccccc-cccchHHHHHHhCCcE
Q 019222 162 GLSEASADTIRRAHAVHP--ITAVQMEYSLWTRE-IEDDIIPLCRELGIGI 209 (344)
Q Consensus 162 GvS~~~~~~l~~~~~~~~--~~~~q~~~n~~~~~-~~~~l~~~~~~~gi~v 209 (344)
|+-+.. ..+. ..+ +--..+..|..-.. ..+++++||.+++|..
T Consensus 279 g~p~~~-~~~~----~~~lil~~~~I~GS~vG~~ket~E~Ldf~a~~~ik~ 324 (360)
T KOG0023|consen 279 GLPEKP-LKLD----TFPLILGRKSIKGSIVGSRKETQEALDFVARGLIKS 324 (360)
T ss_pred eCcCCc-cccc----chhhhcccEEEEeeccccHHHHHHHHHHHHcCCCcC
Confidence 997752 1111 111 11233444444332 2378999999998764
No 212
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=29.14 E-value=3.1e+02 Score=24.86 Aligned_cols=131 Identities=18% Similarity=0.147 Sum_probs=68.6
Q ss_pred HHHHHHHHhccCCCCcEEEEeccCcccCCCcccCCCCCHHHHHHH-------HHHHHhhcCCCcceEEEecCCC------
Q 019222 71 NEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKC-------CEASLKRLDVDYIDLYYQHRVD------ 137 (344)
Q Consensus 71 sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~-------~~~sL~~L~~d~iDl~~lH~~~------ 137 (344)
..+.+.++-+. .--.+++.+|-.+...-. ..+.++.++. ++...+.+.+.-.-++=+|-.+
T Consensus 21 ~~ea~~~F~rA-GGt~~il~nlps~~~g~~-----~~~~edy~r~yd~~lr~ve~~r~e~~~~~~~vvGvHPaE~~~l~e 94 (285)
T COG1831 21 ALEAARRFHRA-GGTHLILVNLPSWSYGIA-----PTGGEDYRRLYDIHLRLVEKIREEGPVEAYAVVGVHPAEVSRLAE 94 (285)
T ss_pred HHHHHHHHHHc-CCcEEEEeecccccccCC-----CCcHHHHHHHHHHHHHHHHHHHHhcCceeEEEeccCHHHHHHHHH
Confidence 46667776665 344566777765443221 1234444443 4444445554433444444221
Q ss_pred ----CCCC---HHHHHHHHHHHHHcCceeeEecCCCcH------------HHHHHHhhcCC-ce-EEeeecccccccccc
Q 019222 138 ----TSVS---IEDTMGELKKLVEEGKIKYIGLSEASA------------DTIRRAHAVHP-IT-AVQMEYSLWTREIED 196 (344)
Q Consensus 138 ----~~~~---~~e~~~~L~~l~~~G~ir~iGvS~~~~------------~~l~~~~~~~~-~~-~~q~~~n~~~~~~~~ 196 (344)
+... ....++...+++.+|++-+||=+..+- +.+..+++... .+ .+|+.---.....-.
T Consensus 95 ~~~~peea~e~m~~~lelA~k~v~eg~avaiGEvGrPHypVs~~v~~~~n~vl~~a~elA~dvdc~vqLHtes~~~~~~~ 174 (285)
T COG1831 95 AGRSPEEALEEMRHALELAAKLVEEGKAVAIGEVGRPHYPVSEEVWEASNEVLEYAMELAKDVDCAVQLHTESLDEETYE 174 (285)
T ss_pred hccChHHHHHHHHHHHHHHHHHHhccceeeeeccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCChHHHH
Confidence 1111 234567778899999988887775431 12334444322 22 345544333332235
Q ss_pred chHHHHHHhCC
Q 019222 197 DIIPLCRELGI 207 (344)
Q Consensus 197 ~l~~~~~~~gi 207 (344)
++-+++++.|+
T Consensus 175 ~i~~~ak~~G~ 185 (285)
T COG1831 175 EIAEMAKEAGI 185 (285)
T ss_pred HHHHHHHHhCC
Confidence 78889999997
No 213
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=29.10 E-value=1.3e+02 Score=26.06 Aligned_cols=53 Identities=19% Similarity=0.278 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCceeeEecCCCc
Q 019222 109 PEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEAS 167 (344)
Q Consensus 109 ~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir~iGvS~~~ 167 (344)
...+.+.+++.++.+|.+. .++ .+...+.++..+.++.+.++| +..|=++..+
T Consensus 13 ~~~~~~g~~~~a~~~g~~~-~~~----~~~~~d~~~q~~~i~~~i~~~-~d~Iiv~~~~ 65 (257)
T PF13407_consen 13 WQQVIKGAKAAAKELGYEV-EIV----FDAQNDPEEQIEQIEQAISQG-VDGIIVSPVD 65 (257)
T ss_dssp HHHHHHHHHHHHHHHTCEE-EEE----EESTTTHHHHHHHHHHHHHTT-ESEEEEESSS
T ss_pred HHHHHHHHHHHHHHcCCEE-EEe----CCCCCCHHHHHHHHHHHHHhc-CCEEEecCCC
Confidence 3557888999999998533 322 344455677888899998887 7777766544
No 214
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=28.89 E-value=5.5e+02 Score=24.98 Aligned_cols=104 Identities=15% Similarity=0.070 Sum_probs=57.7
Q ss_pred cCcCCCChHHHHHHHHhccC----CC-CcEEEEeccCcccCCCcccCCCCCHHHHHHHHHHHHhhcCCCcceEEEecCCC
Q 019222 63 DVYGVDHDNEIMVGKALKQL----PR-DKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVD 137 (344)
Q Consensus 63 ~~Yg~~g~sE~~lG~~l~~~----~R-~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~ 137 (344)
-.||. |+.|-++|++. ++ +=++|.|-+.... .-+++..-+++.-++++ +.++.+|.|+
T Consensus 97 ~V~Gg----~~~L~~aI~~~~~~~~p~~~I~V~~tC~~~l----------iGdDi~~v~~~~~~~~~---~pvi~v~t~g 159 (443)
T TIGR01862 97 IVFGG----EKKLKKLIHEAFTEFPLIKAISVYATCPTGL----------IGDDIEAVAKEVSKEIG---KDVVAVNCPG 159 (443)
T ss_pred eeeCc----HHHHHHHHHHHHHhCCccceEEEECCChHHH----------hccCHHHHHHHHHHhcC---CCEEEEecCC
Confidence 45776 66777777652 44 5566766654322 11233444444334444 6889999876
Q ss_pred CCC-----CHHHHHHH-HHHHH--------HcCceeeEecCCC--cHHHHHHHhhcCCceEE
Q 019222 138 TSV-----SIEDTMGE-LKKLV--------EEGKIKYIGLSEA--SADTIRRAHAVHPITAV 183 (344)
Q Consensus 138 ~~~-----~~~e~~~~-L~~l~--------~~G~ir~iGvS~~--~~~~l~~~~~~~~~~~~ 183 (344)
-.. -...+.++ ++.+. +.++|--||-.++ +.++++++++...+.++
T Consensus 160 f~g~~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gl~v~ 221 (443)
T TIGR01862 160 FAGVSQSKGHHIANIAVINDKVGTREKEITTEYDVNIIGEYNIGGDAWVMRIYLEEMGIQVV 221 (443)
T ss_pred ccCCccchHHHHHHHHHHHHHhCCCCcccCCCCeEEEEccCcCcccHHHHHHHHHHcCCeEE
Confidence 443 12233333 33443 2567888886554 44577777777665544
No 215
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=28.83 E-value=6e+02 Score=25.37 Aligned_cols=57 Identities=14% Similarity=0.181 Sum_probs=33.0
Q ss_pred cceEEEecCCCCCCC-HHHHHHHHHHHH------------------HcCceeeEecCC------CcHHHHHHHhhcCCce
Q 019222 127 YIDLYYQHRVDTSVS-IEDTMGELKKLV------------------EEGKIKYIGLSE------ASADTIRRAHAVHPIT 181 (344)
Q Consensus 127 ~iDl~~lH~~~~~~~-~~e~~~~L~~l~------------------~~G~ir~iGvS~------~~~~~l~~~~~~~~~~ 181 (344)
-++++.+|.|.-... ....-.+++.++ ..++|--||.++ .+..+++++++...+.
T Consensus 116 ~~pVi~v~t~~f~g~~~~g~~~~l~~lv~~~~~~~~~~~~~~~~~~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~ 195 (513)
T CHL00076 116 DSDVILADVNHYRVNELQAADRTLEQIVRFYLEKARKQGTLDQSKTDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIE 195 (513)
T ss_pred CCCEEEeCCCCCcccHHHHHHHHHHHHHHHHhhcccccccccccCCCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCe
Confidence 368999999855432 111111222222 246688888774 3456777887776666
Q ss_pred EE
Q 019222 182 AV 183 (344)
Q Consensus 182 ~~ 183 (344)
++
T Consensus 196 vn 197 (513)
T CHL00076 196 IN 197 (513)
T ss_pred EE
Confidence 55
No 216
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=28.61 E-value=2.6e+02 Score=26.67 Aligned_cols=96 Identities=14% Similarity=0.098 Sum_probs=61.2
Q ss_pred CCCcEEEEeccCcccCC----Cc--ccCCCCCHHHHHHHHHHHHhhcCC-------------Ccc-eEEEecCCCCCCCH
Q 019222 83 PRDKIQLATKFGCFMLD----GV--SIGVKGSPEYVRKCCEASLKRLDV-------------DYI-DLYYQHRVDTSVSI 142 (344)
Q Consensus 83 ~R~~~~I~tK~~~~~~~----~~--~~~~~~~~~~i~~~~~~sL~~L~~-------------d~i-Dl~~lH~~~~~~~~ 142 (344)
.|.-+.|||-+|....- .+ +...+.++..|..|+....+.|+. ..| .++++---.+....
T Consensus 105 ~r~TlCvSSQvGC~mgC~FCaTG~~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~i~NIVfMGMGEPL~Ny 184 (371)
T PRK14461 105 DRATVCVSTQAGCGMGCVFCATGTLGLLRNLSSGEIVAQVIWASRELRAMGAAISKRHAGPVGRVTNLVFMGMGEPFANY 184 (371)
T ss_pred CCceEEEEccCCccCCCCcccCCCCCcccCCCHHHHHHHHHHHHHHhhhcccccccccccccCceeeEEEEccCCchhhH
Confidence 57788999998876542 12 345688999999999877666532 112 23333333444456
Q ss_pred HHHHHHHHHHHHcCc----eeeEecCCCcH-HHHHHHhhcC
Q 019222 143 EDTMGELKKLVEEGK----IKYIGLSEASA-DTIRRAHAVH 178 (344)
Q Consensus 143 ~e~~~~L~~l~~~G~----ir~iGvS~~~~-~~l~~~~~~~ 178 (344)
+.++++++-|.+..- -|.|=||+-.. ..++++.+..
T Consensus 185 dnV~~ai~il~d~~g~~is~R~ITVST~Givp~I~~la~~~ 225 (371)
T PRK14461 185 DRWWQAVERLHDPQGFNLGARSMTVSTVGLVKGIRRLANER 225 (371)
T ss_pred HHHHHHHHHhcCccccCcCCCceEEEeecchhHHHHHHhcc
Confidence 789999999977522 35677777643 3566665543
No 217
>COG0218 Predicted GTPase [General function prediction only]
Probab=28.43 E-value=3.9e+02 Score=23.06 Aligned_cols=99 Identities=15% Similarity=0.004 Sum_probs=68.3
Q ss_pred HHHHHHHHHHH------cCCCEEeCccCcCCCChHHHHHHHHhccCCCCcEEEEeccCcccCCCcccCCCCCHHHHHHHH
Q 019222 43 VGCSIIKETFN------RGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCC 116 (344)
Q Consensus 43 ~~~~~l~~A~~------~Gi~~~DtA~~Yg~~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~ 116 (344)
....++...++ ..+-.+|.-..-- ..+..+=++|......=++|.||.-- .......+.+
T Consensus 92 ~w~~~i~~YL~~R~~L~~vvlliD~r~~~~---~~D~em~~~l~~~~i~~~vv~tK~DK-----------i~~~~~~k~l 157 (200)
T COG0218 92 KWKKLIEEYLEKRANLKGVVLLIDARHPPK---DLDREMIEFLLELGIPVIVVLTKADK-----------LKKSERNKQL 157 (200)
T ss_pred HHHHHHHHHHhhchhheEEEEEEECCCCCc---HHHHHHHHHHHHcCCCeEEEEEcccc-----------CChhHHHHHH
Confidence 34555655554 3566778554332 25677788888777788899999753 3556677888
Q ss_pred HHHHhhcCCCcceE--EEecCCCCCCCHHHHHHHHHHHHHc
Q 019222 117 EASLKRLDVDYIDL--YYQHRVDTSVSIEDTMGELKKLVEE 155 (344)
Q Consensus 117 ~~sL~~L~~d~iDl--~~lH~~~~~~~~~e~~~~L~~l~~~ 155 (344)
....++|+.+..|- +++........+++++..+.+....
T Consensus 158 ~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 158 NKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred HHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 99999998777765 5555555556688888888876553
No 218
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=28.38 E-value=3.1e+02 Score=27.57 Aligned_cols=146 Identities=11% Similarity=0.073 Sum_probs=79.7
Q ss_pred CHHHHHHHHHHHHHcCCCEE-eCccCcCCCChHHHHHHHHhccCCCCcEEEEeccCcccC--CCcccCCCCCHHHHHHHH
Q 019222 40 SHEVGCSIIKETFNRGITLF-DTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFML--DGVSIGVKGSPEYVRKCC 116 (344)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~-DtA~~Yg~~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~--~~~~~~~~~~~~~i~~~~ 116 (344)
+.++-.+-+..|++.|-..+ |-+ ..|+ -..+-+++-+. ..+=|-|= ..... .......+++.+.+.+.+
T Consensus 230 ~ieeEveK~~~A~~~GADtvMDLS-TGgd----i~~~R~~Il~~--spvPvGTV-PiYqA~~~~~~~~~~lt~e~~~d~i 301 (607)
T PRK09284 230 SIEEEVEKMVWATRWGADTVMDLS-TGKN----IHETREWILRN--SPVPIGTV-PIYQALEKVNGVAEDLTWEIFRDTL 301 (607)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecC-CCCC----HHHHHHHHHHc--CCCCccCc-cHHHHHHHhcCChhhCCHHHHHHHH
Confidence 44555566788888887644 444 2233 34444444221 11111110 00000 000012356777777777
Q ss_pred HHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCceeeEecCCCcHHHHHHHhhcCCceEEeeecccccccccc
Q 019222 117 EASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTREIED 196 (344)
Q Consensus 117 ~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~ 196 (344)
++..+ +=||.+.||.-- .++.++.++ + |..||-.-....+...+-... .=|++...+ .
T Consensus 302 eeQAe----qGVDf~TIHaGv-------~~~~v~~~~--~--R~tgIVSRGGSima~Wml~h~------kENplYe~F-D 359 (607)
T PRK09284 302 IEQAE----QGVDYFTIHAGV-------LLRYVPLTA--K--RVTGIVSRGGSIMAKWCLAHH------KENFLYTHF-E 359 (607)
T ss_pred HHHHH----hCCCEEEEChhh-------HHHHHHHHh--C--cccCcccCCHHHHHHHHHHcC------CcCcHHHHH-H
Confidence 77665 456778889741 344444554 2 778888777777766654322 224444433 5
Q ss_pred chHHHHHHhCCcEEEcccCcccc
Q 019222 197 DIIPLCRELGIGIVAYSPLGRGF 219 (344)
Q Consensus 197 ~l~~~~~~~gi~v~a~spl~~G~ 219 (344)
++++.|++++|.+ +|+.|+
T Consensus 360 ~ileI~k~YDVtl----SLGDGL 378 (607)
T PRK09284 360 EICEIMAAYDVSF----SLGDGL 378 (607)
T ss_pred HHHHHHHHhCeee----eccCCc
Confidence 7999999999998 456554
No 219
>PRK12928 lipoyl synthase; Provisional
Probab=28.30 E-value=4e+02 Score=24.33 Aligned_cols=161 Identities=15% Similarity=0.175 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCccCcC---CCChHHHHHHHHhccCCCCcEEEEeccCcccCCCcccCCCCCHHHHHHH
Q 019222 39 LSHEVGCSIIKETFNRGITLFDTSDVYG---VDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKC 115 (344)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg---~~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~ 115 (344)
.+.++..+.++.+.+.|++++-...... . ...-..+-+.++......-.+..++. +++.+..
T Consensus 87 ~~~eei~~~a~~~~~~G~keivitg~~~dDl~-d~g~~~~~ell~~Ik~~~p~~~I~~l-------------tp~~~~~- 151 (290)
T PRK12928 87 LDPDEPERVAEAVAALGLRYVVLTSVARDDLP-DGGAAHFVATIAAIRARNPGTGIEVL-------------TPDFWGG- 151 (290)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEEeCCccc-ccCHHHHHHHHHHHHhcCCCCEEEEe-------------ccccccC-
Q ss_pred HHHHHhhcCCCcceEEEe---------cCCCCCCCHHHHHHHHHHHHHcC---ceeeE---ecCCCcHHHHHHHhhc---
Q 019222 116 CEASLKRLDVDYIDLYYQ---------HRVDTSVSIEDTMGELKKLVEEG---KIKYI---GLSEASADTIRRAHAV--- 177 (344)
Q Consensus 116 ~~~sL~~L~~d~iDl~~l---------H~~~~~~~~~e~~~~L~~l~~~G---~ir~i---GvS~~~~~~l~~~~~~--- 177 (344)
.++.|++|.-...+++.. ....+....++.++.++.+++.| .++.- |+ .-+.+++.+.+..
T Consensus 152 ~~e~L~~l~~Ag~~i~~hnlEt~~~vl~~m~r~~t~e~~le~l~~ak~~gp~i~~~s~iIvG~-GET~ed~~etl~~Lre 230 (290)
T PRK12928 152 QRERLATVLAAKPDVFNHNLETVPRLQKAVRRGADYQRSLDLLARAKELAPDIPTKSGLMLGL-GETEDEVIETLRDLRA 230 (290)
T ss_pred CHHHHHHHHHcCchhhcccCcCcHHHHHHhCCCCCHHHHHHHHHHHHHhCCCceecccEEEeC-CCCHHHHHHHHHHHHh
Q ss_pred CCceEEee-eccc-----------cccccccchHHHHHHhCCcEEEcccC
Q 019222 178 HPITAVQM-EYSL-----------WTREIEDDIIPLCRELGIGIVAYSPL 215 (344)
Q Consensus 178 ~~~~~~q~-~~n~-----------~~~~~~~~l~~~~~~~gi~v~a~spl 215 (344)
.+++.+.+ +|.. ..+.....+-+.+.+.|...++.+||
T Consensus 231 l~~d~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~~~~~~~~g~~~~~~~p~ 280 (290)
T PRK12928 231 VGCDRLTIGQYLRPSLAHLPVQRYWTPEEFEALGQIARELGFSHVRSGPL 280 (290)
T ss_pred cCCCEEEEEcCCCCCccCCceeeccCHHHHHHHHHHHHHcCCceeEecCc
No 220
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=28.30 E-value=5.1e+02 Score=24.40 Aligned_cols=120 Identities=10% Similarity=0.146 Sum_probs=75.6
Q ss_pred CCHHHHHHHHHHHHHc---CCCEEeCccCcCCCChHHHHHHHHhccCCCCcEEEEeccCcccCCCcccCCCCCHHHHHHH
Q 019222 39 LSHEVGCSIIKETFNR---GITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKC 115 (344)
Q Consensus 39 ~~~~~~~~~l~~A~~~---Gi~~~DtA~~Yg~~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~ 115 (344)
.+.++..+++....+. =+-.+|..+..+. --..+-+.+. ...-++|.+|+-.... ....+.+.+.
T Consensus 48 ~~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s---~~~~l~~~~~--~~piilV~NK~DLl~k-------~~~~~~~~~~ 115 (360)
T TIGR03597 48 LNDDDFLNLLNSLGDSNALIVYVVDIFDFEGS---LIPELKRFVG--GNPVLLVGNKIDLLPK-------SVNLSKIKEW 115 (360)
T ss_pred CCHHHHHHHHhhcccCCcEEEEEEECcCCCCC---ccHHHHHHhC--CCCEEEEEEchhhCCC-------CCCHHHHHHH
Confidence 3566677776666532 2346676554443 1122233332 4456789999864321 2245667777
Q ss_pred HHHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCceeeEecCCCcHHHH
Q 019222 116 CEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTI 171 (344)
Q Consensus 116 ~~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir~iGvS~~~~~~l 171 (344)
+.+.++.+|....|++.+- .-....++++++.|.++.+.+.+-.+|.+|..-+.+
T Consensus 116 l~~~~k~~g~~~~~i~~vS-Ak~g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStl 170 (360)
T TIGR03597 116 MKKRAKELGLKPVDIILVS-AKKGNGIDELLDKIKKARNKKDVYVVGVTNVGKSSL 170 (360)
T ss_pred HHHHHHHcCCCcCcEEEec-CCCCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH
Confidence 7777777876545666554 344567889999998887777899999999866544
No 221
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=28.27 E-value=1.2e+02 Score=26.26 Aligned_cols=59 Identities=8% Similarity=0.202 Sum_probs=39.6
Q ss_pred HHHHHHHHHHcCceeeEecCCC-cHHHHHHHhhcC-CceEEeeeccccccccccchHHHHHHhCCcEEE
Q 019222 145 TMGELKKLVEEGKIKYIGLSEA-SADTIRRAHAVH-PITAVQMEYSLWTREIEDDIIPLCRELGIGIVA 211 (344)
Q Consensus 145 ~~~~L~~l~~~G~ir~iGvS~~-~~~~l~~~~~~~-~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a 211 (344)
.++.+++++++..=-.||.-+- +.++++++++.. .|. .+ +....+++++|+++||.+++
T Consensus 42 a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~Fi-----vS---P~~~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 42 ALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFI-----VS---PGTTQELLAAANDSDVPLLP 102 (201)
T ss_pred HHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEE-----EC---CCCCHHHHHHHHHcCCCEeC
Confidence 4555666665543245888775 888888887753 221 12 22346899999999999987
No 222
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=28.22 E-value=1.4e+02 Score=22.78 Aligned_cols=52 Identities=13% Similarity=0.068 Sum_probs=31.2
Q ss_pred CCCcHHHHHHHhhcCCceEEeeeccccccccccchHHHHHHhCCcEEEcccC
Q 019222 164 SEASADTIRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPL 215 (344)
Q Consensus 164 S~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl 215 (344)
+..+.+++..+....+++++-+--..-.+....++.++++++||++..+..-
T Consensus 37 ~~l~~~~l~~~~~~~~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T~ 88 (109)
T cd00248 37 SDLDPEALLPLLAEDRPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMSTG 88 (109)
T ss_pred ccCCHHHHHHHHhhCCCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCcH
Confidence 3445566666555433555444333322333457899999999999887553
No 223
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=28.02 E-value=65 Score=27.53 Aligned_cols=67 Identities=16% Similarity=0.198 Sum_probs=41.3
Q ss_pred HHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCceeeEecCC-CcHHHHHHHhhcCCceEEeeeccc
Q 019222 119 SLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSE-ASADTIRRAHAVHPITAVQMEYSL 189 (344)
Q Consensus 119 sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~q~~~n~ 189 (344)
.+..+|.||+=+.+ .|...-.+ ..+...++.+.-..+.+||-. .+.+.+.+.+...+++++|++-+.
T Consensus 14 ~~~~~g~d~~Gfi~--~~~S~R~v--~~~~a~~l~~~~~~~~VgVf~~~~~~~I~~~~~~~~ld~vQLHG~e 81 (197)
T PF00697_consen 14 LAAELGADYLGFIF--YPKSPRYV--SPDQARELVSAVPPKIVGVFVNQSPEEILEIVEELGLDVVQLHGDE 81 (197)
T ss_dssp HHHHHTSSEEEEE----TTCTTB----HHHHHHHHCCSSSSEEEEESSS-HHHHHHHHHHCTESEEEE-SGG
T ss_pred HHHHcCCCEEeeec--CCCCCCcc--CHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHHcCCCEEEECCCC
Confidence 45678999988754 34322111 233444554444444788864 578888888888999999987664
No 224
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=27.88 E-value=5.8e+02 Score=24.91 Aligned_cols=108 Identities=15% Similarity=0.131 Sum_probs=68.1
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcceEEEecCC-CCCCCHHHHHHHHHHHHHc--CceeeEecCCCc---HHHHHHHhhcCC
Q 019222 106 KGSPEYVRKCCEASLKRLDVDYIDLYYQHRV-DTSVSIEDTMGELKKLVEE--GKIKYIGLSEAS---ADTIRRAHAVHP 179 (344)
Q Consensus 106 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~-~~~~~~~e~~~~L~~l~~~--G~ir~iGvS~~~---~~~l~~~~~~~~ 179 (344)
..+++.+.+.+++..+.++ .++.+-+-.| ++....+.+++.|..++++ |. .+.+|+-. ++.++++.+. .
T Consensus 59 ~Ltpee~~~~i~~v~~~~~--~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i--~i~lsTNG~~l~e~i~~L~~~-g 133 (442)
T TIGR01290 59 LLTPEQALRKARQVAAEIP--QLSVVGIAGPGDPLANIGKTFQTLELVARQLPDV--KLCLSTNGLMLPEHVDRLVDL-G 133 (442)
T ss_pred cCCHHHHHHHHHHHHHhcC--CCCEEEEecCCCcccCccccHHHHHHHHHhcCCC--eEEEECCCCCCHHHHHHHHHC-C
Confidence 5789999999988887662 3455555553 3434445688899999988 43 46666532 5667776654 3
Q ss_pred ceEEeeecccccccccc---------------------------chHHHHHHhCCcEEEcccCccc
Q 019222 180 ITAVQMEYSLWTREIED---------------------------DIIPLCRELGIGIVAYSPLGRG 218 (344)
Q Consensus 180 ~~~~q~~~n~~~~~~~~---------------------------~l~~~~~~~gi~v~a~spl~~G 218 (344)
++.+.+.++-++++... +-++.+.+.|+.+....++--|
T Consensus 134 vd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~~v~v~~vlIpG 199 (442)
T TIGR01290 134 VGHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGILVKVNSVLIPG 199 (442)
T ss_pred CCeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCCeEEEEEEeeCC
Confidence 56677777665543211 1244566778777666666544
No 225
>PHA02128 hypothetical protein
Probab=27.74 E-value=1.6e+02 Score=22.51 Aligned_cols=69 Identities=16% Similarity=0.299 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHcCceeeEecCCCcHHHHHHHhh-----------------cCC-ceEEee---eccccccccccchHHHH
Q 019222 144 DTMGELKKLVEEGKIKYIGLSEASADTIRRAHA-----------------VHP-ITAVQM---EYSLWTREIEDDIIPLC 202 (344)
Q Consensus 144 e~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~-----------------~~~-~~~~q~---~~n~~~~~~~~~l~~~~ 202 (344)
.++.--.++..+|-+|-|-+...+..++..... ..| +.+.++ +|.+-.+....++.+|+
T Consensus 61 gl~~lane~~aqgg~r~itmn~ankrhv~dmv~~~wrgdi~ist~selt~~cp~vkflmideseytltsrh~rqeiydwa 140 (151)
T PHA02128 61 GLLHLANEVSAQGGARIITMNSANKRHVQDMVSYQWRGDIRISTISELTDRCPKVKFLMIDESEYTLTSRHQRQEIYDWA 140 (151)
T ss_pred hHHHHHHHHHhcCCeEEEEeccchhhHHHHHhcccccCceEEeeHHHHhccCCeeEEEEEcchhceecchhhHHHHHhhc
Confidence 466677788889999988887666555443322 122 223333 56665555457899999
Q ss_pred HHhCCcEEEc
Q 019222 203 RELGIGIVAY 212 (344)
Q Consensus 203 ~~~gi~v~a~ 212 (344)
-.||+.++.+
T Consensus 141 gthgvefvim 150 (151)
T PHA02128 141 GTHGVEFVIM 150 (151)
T ss_pred ccCceEEEEe
Confidence 9999988764
No 226
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=27.72 E-value=4.9e+02 Score=23.96 Aligned_cols=137 Identities=12% Similarity=0.052 Sum_probs=78.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCcc---------CcCCCChH----HHHHHHHhccC-CCCcEEEEeccCcccCCCcccCC
Q 019222 40 SHEVGCSIIKETFNRGITLFDTSD---------VYGVDHDN----EIMVGKALKQL-PRDKIQLATKFGCFMLDGVSIGV 105 (344)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~---------~Yg~~g~s----E~~lG~~l~~~-~R~~~~I~tK~~~~~~~~~~~~~ 105 (344)
+.++..+..+.+.+.|+..||.-- .|+ |.+ .+.+.+.++.. .+-.+-|+.|+...+..
T Consensus 73 ~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~--Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~------ 144 (319)
T TIGR00737 73 DPDTMAEAAKINEELGADIIDINMGCPVPKITKKGA--GSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDD------ 144 (319)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCc--cchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCC------
Confidence 667888888888899999998531 222 211 24444444432 22235577786432211
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcceEEEecCCCCCCCH--HHHHHHHHHHHHcCceeeEecCCC-cHHHHHHHhhcCCceE
Q 019222 106 KGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSI--EDTMGELKKLVEEGKIKYIGLSEA-SADTIRRAHAVHPITA 182 (344)
Q Consensus 106 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~--~e~~~~L~~l~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~ 182 (344)
+...+ ..+-+.|+..|+|. +.+|........ .-.|+.+.++++.=.+--|+.... +++++.++++....+.
T Consensus 145 --~~~~~-~~~a~~l~~~G~d~---i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~ 218 (319)
T TIGR00737 145 --AHINA-VEAARIAEDAGAQA---VTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDG 218 (319)
T ss_pred --CcchH-HHHHHHHHHhCCCE---EEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCE
Confidence 11111 23444567777654 556753221111 124777777777666777776664 7778888887677777
Q ss_pred Eeeecccc
Q 019222 183 VQMEYSLW 190 (344)
Q Consensus 183 ~q~~~n~~ 190 (344)
+++--.++
T Consensus 219 VmigR~~l 226 (319)
T TIGR00737 219 VMIGRGAL 226 (319)
T ss_pred EEEChhhh
Confidence 77754443
No 227
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=27.72 E-value=4.6e+02 Score=23.64 Aligned_cols=123 Identities=13% Similarity=0.146 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCccC------cC-CCChHHHHHHHHhccCCCCcEEEEeccCcccCCCcccCCCCCHHH
Q 019222 39 LSHEVGCSIIKETFNRGITLFDTSDV------YG-VDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEY 111 (344)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~------Yg-~~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~ 111 (344)
.+.++..++.....+.||..|+...- ++ .+..-++.+..+.+..++.++...+...... ....-|..
T Consensus 18 ~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~------~~~~~p~~ 91 (275)
T cd07937 18 MRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLV------GYRHYPDD 91 (275)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhccccccc------CccCCCcH
Confidence 46778888888888999999998741 11 0011234444443332444444333321110 00112232
Q ss_pred -HHHHHHHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCceeeEec-----CCCcHHHHHH
Q 019222 112 -VRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGL-----SEASADTIRR 173 (344)
Q Consensus 112 -i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir~iGv-----S~~~~~~l~~ 173 (344)
.+..++.+. ..|++.|-++ .+..+++.+.+..+..++.|+.-.+.+ +.++++.+.+
T Consensus 92 ~~~~di~~~~-~~g~~~iri~-----~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~ 153 (275)
T cd07937 92 VVELFVEKAA-KNGIDIFRIF-----DALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVK 153 (275)
T ss_pred HHHHHHHHHH-HcCCCEEEEe-----ecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHH
Confidence 333344433 4455554442 222346778888888899997544444 3345554443
No 228
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=27.57 E-value=1.5e+02 Score=21.33 Aligned_cols=27 Identities=22% Similarity=0.169 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHH
Q 019222 247 EKNKLLYTRLETLAAKYGCTTPQLALA 273 (344)
Q Consensus 247 ~~~~~~~~~l~~la~~~g~s~~q~al~ 273 (344)
+...+.+.+|.+||++.|++.++++.-
T Consensus 48 ~~V~~sl~kL~~La~~N~v~feeLc~Y 74 (82)
T PF11020_consen 48 EKVMDSLSKLYKLAKENNVSFEELCVY 74 (82)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 345678889999999999999998753
No 229
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=27.42 E-value=88 Score=24.17 Aligned_cols=28 Identities=18% Similarity=0.349 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCccCcCC
Q 019222 40 SHEVGCSIIKETFNRGITLFDTSDVYGV 67 (344)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~ 67 (344)
+...+.+....+++.|++.||.+..|..
T Consensus 75 ~~~~~~~~~~~~~~~g~~ViD~s~~~R~ 102 (121)
T PF01118_consen 75 PHGASKELAPKLLKAGIKVIDLSGDFRL 102 (121)
T ss_dssp CHHHHHHHHHHHHHTTSEEEESSSTTTT
T ss_pred chhHHHHHHHHHhhCCcEEEeCCHHHhC
Confidence 5677889999999999999999999864
No 230
>PF09989 DUF2229: CoA enzyme activase uncharacterised domain (DUF2229); InterPro: IPR018709 Proteins containing this domain include various bacterial hypothetical proteins, as well as CoA enzyme activases. The exact function of this domain has not, as yet, been defined.
Probab=27.24 E-value=1.4e+02 Score=26.04 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=26.1
Q ss_pred EEeeeccccccccccchHHHHHHhCCcEEEcc
Q 019222 182 AVQMEYSLWTREIEDDIIPLCRELGIGIVAYS 213 (344)
Q Consensus 182 ~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~s 213 (344)
++==+||++++....++.+..++.|+.|+...
T Consensus 188 l~GrpY~~~D~~in~~I~~~l~~~G~~vit~d 219 (221)
T PF09989_consen 188 LLGRPYNIYDPFINMGIPDKLRSLGVPVITED 219 (221)
T ss_pred EEcCCCcCCCcccCCchHHHHHHCCCeeeCcc
Confidence 33348999999888899999999999998643
No 231
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=26.86 E-value=5.3e+02 Score=24.12 Aligned_cols=24 Identities=13% Similarity=0.187 Sum_probs=21.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCc
Q 019222 39 LSHEVGCSIIKETFNRGITLFDTS 62 (344)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA 62 (344)
.+.++..++++..-+.||..|+.+
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVT 45 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEee
Confidence 477889999999999999999984
No 232
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=26.37 E-value=5.4e+02 Score=24.04 Aligned_cols=24 Identities=13% Similarity=0.141 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCc
Q 019222 39 LSHEVGCSIIKETFNRGITLFDTS 62 (344)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA 62 (344)
.+.++..++++..-+.||..|+.+
T Consensus 21 f~~~~~~~ia~~Ld~aGV~~IEvg 44 (333)
T TIGR03217 21 FTIEQVRAIAAALDEAGVDAIEVT 44 (333)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe
Confidence 477889999999999999999984
No 233
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=26.36 E-value=5.2e+02 Score=23.84 Aligned_cols=85 Identities=8% Similarity=0.029 Sum_probs=60.3
Q ss_pred ceEEEecCCCCCCCHHHHHHHHHHHHHcCc-eeeEecCCCcHHHHHHHhhcCCceEEeeeccccccccccchHHHHHHhC
Q 019222 128 IDLYYQHRVDTSVSIEDTMGELKKLVEEGK-IKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELG 206 (344)
Q Consensus 128 iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~g 206 (344)
.++.++-.|-+.. .++.+.+|++.-. =-+.|=|-++...+..+++..-.+++|+..+..-. -..+.+.|+.+|
T Consensus 192 ~~i~~iEqP~~~~----~~~~~~~l~~~~~~Pia~DEs~~~~~d~~~~~~~~a~d~v~ik~~k~GG--i~~~~~~a~~~g 265 (320)
T PRK02714 192 GKIEFIEQPLPPD----QFDEMLQLSQDYQTPIALDESVANLAQLQQCYQQGWRGIFVIKPAIAGS--PSRLRQFCQQHP 265 (320)
T ss_pred CCccEEECCCCcc----cHHHHHHHHHhCCCCEEECCccCCHHHHHHHHHcCCCCEEEEcchhcCC--HHHHHHHHHHhC
Confidence 4777888775543 3566667766543 33667777888899888887778888888776443 135788999999
Q ss_pred CcEEEcccCccc
Q 019222 207 IGIVAYSPLGRG 218 (344)
Q Consensus 207 i~v~a~spl~~G 218 (344)
|.++..+.+..|
T Consensus 266 i~~~~~~~~es~ 277 (320)
T PRK02714 266 LDAVFSSVFETA 277 (320)
T ss_pred CCEEEEechhhH
Confidence 999987665444
No 234
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=26.23 E-value=5.6e+02 Score=24.15 Aligned_cols=92 Identities=16% Similarity=0.264 Sum_probs=56.5
Q ss_pred CcceEE-EecCCCCC-----------CCHHHHHHHHHHHHH-cCc---eeeEecC--CCcHHHHHHHhhc---C-----C
Q 019222 126 DYIDLY-YQHRVDTS-----------VSIEDTMGELKKLVE-EGK---IKYIGLS--EASADTIRRAHAV---H-----P 179 (344)
Q Consensus 126 d~iDl~-~lH~~~~~-----------~~~~e~~~~L~~l~~-~G~---ir~iGvS--~~~~~~l~~~~~~---~-----~ 179 (344)
.++||. -||.+++. .+++++++++.+..+ .|. |+++=+. |.+.++++++.+. . .
T Consensus 203 ~~v~LalSLha~dd~~r~~l~pi~~~~~L~~ll~~~~~~l~~~~~~V~iry~LI~GvNDs~e~a~~L~~~lk~l~~~~~~ 282 (347)
T PRK14453 203 PQVNLTFSLHSPFESQRSELMPINKRFPLNEVMKTLDEHIRHTGRKVYIAYIMLEGVNDSKEHAEAVVGLLRNRGSWEHL 282 (347)
T ss_pred cCcCEEEEecCCCHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEEeECCCCCCHHHHHHHHHHHhhccccCCc
Confidence 457775 47877432 356777777776655 443 4455443 3455555544432 2 3
Q ss_pred ceEEeeeccccccc------cc----cchHHHHHHhCCcEEEcccCcc
Q 019222 180 ITAVQMEYSLWTRE------IE----DDIIPLCRELGIGIVAYSPLGR 217 (344)
Q Consensus 180 ~~~~q~~~n~~~~~------~~----~~l~~~~~~~gi~v~a~spl~~ 217 (344)
..++-++||.+... +. ....+..+++|+.+......+.
T Consensus 283 ~~VnLIPyn~~~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~~G~ 330 (347)
T PRK14453 283 YHVNLIPYNSTDKTPFKFQSSSAGQIKQFCSTLKSAGISVTVRTQFGS 330 (347)
T ss_pred ceEEEecCCCCCCCCccCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 56888899987432 11 3456777888999988877764
No 235
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=26.00 E-value=5.6e+02 Score=24.15 Aligned_cols=98 Identities=13% Similarity=0.137 Sum_probs=59.4
Q ss_pred HHhhcCCCcceEEEecCCCCC-----------CCHHHHHHHHHHHHHc-Cc---eeeEecC--CCcHHHHHH---HhhcC
Q 019222 119 SLKRLDVDYIDLYYQHRVDTS-----------VSIEDTMGELKKLVEE-GK---IKYIGLS--EASADTIRR---AHAVH 178 (344)
Q Consensus 119 sL~~L~~d~iDl~~lH~~~~~-----------~~~~e~~~~L~~l~~~-G~---ir~iGvS--~~~~~~l~~---~~~~~ 178 (344)
-|...++..+++ -||.++++ .+++++++++.+...+ |+ |+++=+. |.+.+++++ ++...
T Consensus 207 ~L~~~~l~~L~i-SLha~~~e~r~~i~p~~~~~~l~~ll~al~~~~~~~~~~v~iey~LI~GvNDs~ed~~~l~~~l~~~ 285 (354)
T PRK14460 207 ELGESGLAFLAV-SLHAPNQELRERIMPKAARWPLDDLIAALKSYPLKTRERVTFEYLLLGGVNDSLEHARELVRLLSRT 285 (354)
T ss_pred HHHhCCCcEEEE-eCCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhcCCeEEEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 345556555554 67877542 3577888888875443 22 4455443 344455444 44444
Q ss_pred CceEEeeeccccccc----cc----cchHHHHHHhCCcEEEcccCcc
Q 019222 179 PITAVQMEYSLWTRE----IE----DDIIPLCRELGIGIVAYSPLGR 217 (344)
Q Consensus 179 ~~~~~q~~~n~~~~~----~~----~~l~~~~~~~gi~v~a~spl~~ 217 (344)
+..++-++||+.... +. ....+..+++|+.+......+.
T Consensus 286 ~~~VnLIpyn~~~g~~y~~p~~e~v~~f~~~l~~~Gi~vtir~~~G~ 332 (354)
T PRK14460 286 KCKLNLIVYNPAEGLPYSAPTEERILAFEKYLWSKGITAIIRKSKGQ 332 (354)
T ss_pred CCcEEEEcCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCC
Confidence 567888999986432 11 2356677788999988777754
No 236
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=25.99 E-value=5.7e+02 Score=24.16 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCcc
Q 019222 39 LSHEVGCSIIKETFNRGITLFDTSD 63 (344)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~ 63 (344)
.+.++..++++..-+.||..|+...
T Consensus 19 ~s~~~k~~ia~~L~~~Gv~~IEvG~ 43 (363)
T TIGR02090 19 LTVEQKVEIARKLDELGVDVIEAGF 43 (363)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 3678888999998999999999753
No 237
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=25.95 E-value=3.6e+02 Score=25.22 Aligned_cols=125 Identities=13% Similarity=0.090 Sum_probs=67.6
Q ss_pred HhccCCCCcEEEEeccCcccCCCcccCCCCCHHHHHHHHHHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCc
Q 019222 78 ALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGK 157 (344)
Q Consensus 78 ~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ 157 (344)
.+....|+++=++|+++...-..+=..-..+. .+.+.+-+.+++.| -+..+|.. +.++.....++.+..|+
T Consensus 16 ~lp~~s~~dvdlst~~~~~~l~~P~~inAM~t-~iN~~LA~~a~~~G----~~~~~~k~----~~e~~~~~~r~~~~~~l 86 (326)
T PRK05458 16 KCIVNSRSECDTSVTLGPRTFKLPVVPANMQT-IIDEKIAEWLAENG----YFYIMHRF----DPEARIPFIKDMHEQGL 86 (326)
T ss_pred CCCCCCHHHcccceEECCcEecCcEEEecccc-hhHHHHHHHHHHcC----CEEEEecC----CHHHHHHHHHhcccccc
Confidence 34444778888888876332111100001122 78888888888887 46778873 34444444455556677
Q ss_pred eeeEecCC--CcHHHHHHHhhcC-CceEEeeeccccccccccchHHHHHHh--CCcEEE
Q 019222 158 IKYIGLSE--ASADTIRRAHAVH-PITAVQMEYSLWTREIEDDIIPLCREL--GIGIVA 211 (344)
Q Consensus 158 ir~iGvS~--~~~~~l~~~~~~~-~~~~~q~~~n~~~~~~~~~l~~~~~~~--gi~v~a 211 (344)
+-.++++. ...+++.++++.. ..+++++....-+.+.-.+++...+++ ++.|++
T Consensus 87 ~v~~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~ 145 (326)
T PRK05458 87 IASISVGVKDDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIA 145 (326)
T ss_pred EEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEE
Confidence 66555554 2234444555432 347777755543322223455555543 355555
No 238
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=25.93 E-value=5.5e+02 Score=23.97 Aligned_cols=134 Identities=19% Similarity=0.266 Sum_probs=78.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCccCcCCCChHHHHHHHHhcc----C---CCCcEEEEeccCcccCCCcccCCCCCHHH
Q 019222 39 LSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ----L---PRDKIQLATKFGCFMLDGVSIGVKGSPEY 111 (344)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lG~~l~~----~---~R~~~~I~tK~~~~~~~~~~~~~~~~~~~ 111 (344)
.+.++...+++.|.+.|++=|=-+ |. |..+-+-|.+ . .-.++-++|-..
T Consensus 43 Ls~eei~~~~~~~~~~Gv~kvRlT---GG----EPllR~dl~eIi~~l~~~~~~~islTTNG~----------------- 98 (322)
T COG2896 43 LSLEEIRRLVRAFAELGVEKVRLT---GG----EPLLRKDLDEIIARLARLGIRDLSLTTNGV----------------- 98 (322)
T ss_pred CCHHHHHHHHHHHHHcCcceEEEe---CC----CchhhcCHHHHHHHHhhcccceEEEecchh-----------------
Confidence 468899999999999999988533 43 4333333222 1 234555665532
Q ss_pred HHHHHHHHHhhcCCCcceEEEecCCCCC--------CCHHHHHHHHHHHHHcCceeeEecCCCcHHHHHHHhhcCCceEE
Q 019222 112 VRKCCEASLKRLDVDYIDLYYQHRVDTS--------VSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAV 183 (344)
Q Consensus 112 i~~~~~~sL~~L~~d~iDl~~lH~~~~~--------~~~~e~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~ 183 (344)
.......-|+.-|++.|.+ -||..+++ ..+.++++.+++.++.|.- |+.+|
T Consensus 99 ~L~~~a~~Lk~AGl~rVNV-SLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~--------------------pVKlN 157 (322)
T COG2896 99 LLARRAADLKEAGLDRVNV-SLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLT--------------------PVKLN 157 (322)
T ss_pred hHHHHHHHHHHcCCcEEEe-ecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCC--------------------ceEEE
Confidence 3445666778888887773 55655432 2356778888888877762 22222
Q ss_pred eeeccccccccccchHHHHHHhCC--cEEEcccCcc
Q 019222 184 QMEYSLWTREIEDDIIPLCRELGI--GIVAYSPLGR 217 (344)
Q Consensus 184 q~~~n~~~~~~~~~l~~~~~~~gi--~v~a~spl~~ 217 (344)
.+-.--++...-.+++++|+..|+ .++-+-|++.
T Consensus 158 ~Vv~kgvNd~ei~~l~e~~~~~~~~lrfIE~m~~g~ 193 (322)
T COG2896 158 TVLMKGVNDDEIEDLLEFAKERGAQLRFIELMPLGE 193 (322)
T ss_pred EEEecCCCHHHHHHHHHHHhhcCCceEEEEEeecCc
Confidence 221111222211467888887774 4566666653
No 239
>PLN02522 ATP citrate (pro-S)-lyase
Probab=25.87 E-value=1.1e+02 Score=31.18 Aligned_cols=86 Identities=24% Similarity=0.160 Sum_probs=49.5
Q ss_pred CChHHHHHHHHhccCCCCcEEEEeccCcccC---CCcccCCCCCH----HHHHHHHHHHHhhcCCCcceEEEecCCCCCC
Q 019222 68 DHDNEIMVGKALKQLPRDKIQLATKFGCFML---DGVSIGVKGSP----EYVRKCCEASLKRLDVDYIDLYYQHRVDTSV 140 (344)
Q Consensus 68 ~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~---~~~~~~~~~~~----~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~ 140 (344)
++..|+.+-+++++..+.+-+|+-|.|.... ......|..+. ....+..+..|++-|+-. ...++.
T Consensus 233 Gg~~e~~f~ea~~~a~~~KPVVa~kaGrsa~~~~~~aa~gHtGAiag~~~~ta~~k~aAlr~aGv~v-----v~s~~E-- 305 (608)
T PLN02522 233 GGRDEYSLVEALKQGKVSKPVVAWVSGTCARLFKSEVQFGHAGAKSGGDMESAQAKNKALKDAGAIV-----PTSFEA-- 305 (608)
T ss_pred CchhHHHHHHHHHHhcCCCCEEEEeccCCCccCccccccccccccccCCCccHHHHHHHHHHCCCeE-----eCCHHH--
Confidence 4678888888888756788999999887652 11111111110 112255677777777422 222211
Q ss_pred CHHHHHHHHHHHHHcCceee
Q 019222 141 SIEDTMGELKKLVEEGKIKY 160 (344)
Q Consensus 141 ~~~e~~~~L~~l~~~G~ir~ 160 (344)
-.+-+.+.|++|+.+|.|.-
T Consensus 306 l~~~~~~~~~~~~~~~~~~~ 325 (608)
T PLN02522 306 LEAAIKETFEKLVEEGKIIP 325 (608)
T ss_pred HHHHHHHHHHHHHhCCceee
Confidence 12334566778888887765
No 240
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=25.71 E-value=4.9e+02 Score=23.35 Aligned_cols=131 Identities=16% Similarity=0.148 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCc---cCcCCC---ChHHHHHHHHhccCC-CCcEEEEeccCcccCCCcccCCCCCHHHH
Q 019222 40 SHEVGCSIIKETFNRGITLFDTS---DVYGVD---HDNEIMVGKALKQLP-RDKIQLATKFGCFMLDGVSIGVKGSPEYV 112 (344)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA---~~Yg~~---g~sE~~lG~~l~~~~-R~~~~I~tK~~~~~~~~~~~~~~~~~~~i 112 (344)
+.++..+..+.+.+.|+..|+.- +....+ ....+.+.+.++... .-++-|..|+.... +.+.+
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~----------~~~~~ 178 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYF----------DLEDI 178 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCC----------CHHHH
Confidence 56778888888889999999853 222110 012344455554321 11566888887542 44555
Q ss_pred HHHHHHHHhhcCCCcceEEEecCCCCC-------------C--------C-HHHHHHHHHHHHHcC--ceeeEecCCC-c
Q 019222 113 RKCCEASLKRLDVDYIDLYYQHRVDTS-------------V--------S-IEDTMGELKKLVEEG--KIKYIGLSEA-S 167 (344)
Q Consensus 113 ~~~~~~sL~~L~~d~iDl~~lH~~~~~-------------~--------~-~~e~~~~L~~l~~~G--~ir~iGvS~~-~ 167 (344)
.+.++ .|+..|.|.|.+ |.-... . . ..-.++.+.++++.= .+--||+... +
T Consensus 179 ~~~a~-~l~~~Gad~i~~---~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~ 254 (289)
T cd02810 179 VELAK-AAERAGADGLTA---INTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDS 254 (289)
T ss_pred HHHHH-HHHHcCCCEEEE---EcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCC
Confidence 54444 456777665554 421100 0 0 011355566666543 5666666654 4
Q ss_pred HHHHHHHhhcCCceEEee
Q 019222 168 ADTIRRAHAVHPITAVQM 185 (344)
Q Consensus 168 ~~~l~~~~~~~~~~~~q~ 185 (344)
.+.+.+++.. ..+.+|+
T Consensus 255 ~~da~~~l~~-GAd~V~v 271 (289)
T cd02810 255 GEDVLEMLMA-GASAVQV 271 (289)
T ss_pred HHHHHHHHHc-CccHheE
Confidence 5666666553 3455554
No 241
>PRK01903 rnpA ribonuclease P; Reviewed
Probab=25.66 E-value=3.5e+02 Score=21.58 Aligned_cols=47 Identities=13% Similarity=0.186 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHHHhh----cCCC----------cceEEEecCC--CCCCCHHHHHHHHHHHHH
Q 019222 108 SPEYVRKCCEASLKR----LDVD----------YIDLYYQHRV--DTSVSIEDTMGELKKLVE 154 (344)
Q Consensus 108 ~~~~i~~~~~~sL~~----L~~d----------~iDl~~lH~~--~~~~~~~e~~~~L~~l~~ 154 (344)
.+..|++.+.++.+. |..+ ++|+.++..+ ....+.+++-+.|+.|.+
T Consensus 66 ~RNRiKR~lREa~R~~~~~l~~~~~~~~~~~~~~~~iv~i~~~~~~~~~~~~~l~~~l~~ll~ 128 (133)
T PRK01903 66 KRNRIKRLMREAYRLEKHVLLDRLETDAGAKNRQLAIAFLYTGRSDEIPSLAEFRREMRKLLQ 128 (133)
T ss_pred hhhHHHHHHHHHHHHhHhhhcccccccccccCcceEEEEEEeccccccCCHHHHHHHHHHHHH
Confidence 567777777777766 4332 4799999877 333456666666666543
No 242
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=25.64 E-value=3.2e+02 Score=21.22 Aligned_cols=64 Identities=13% Similarity=0.183 Sum_probs=41.5
Q ss_pred CCCcEEEEeccCcccCCCcccCCCCCHHHHHHHHHHHHhhcCC--CcceEEEecCCCCC-CCHHHHHHHHHHHHHc
Q 019222 83 PRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDV--DYIDLYYQHRVDTS-VSIEDTMGELKKLVEE 155 (344)
Q Consensus 83 ~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~--d~iDl~~lH~~~~~-~~~~e~~~~L~~l~~~ 155 (344)
+|=-+.|+-|++.. ...+..|++.+.+.++.... .-.|++++..+... .+..++.+.|..|.+.
T Consensus 44 ~R~G~~VsKK~~~~---------AV~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~~~~~~~~l~~~l~~ll~k 110 (120)
T PRK04390 44 PRLGLVVGKKTAKR---------AVERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKFDRATAKQAVAELAQLMAK 110 (120)
T ss_pred ceEEEEEecccCcc---------hhhhhHHHHHHHHHHHhccccCCCceEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 45446666664432 23678888888888875542 35699999988643 4666666666666544
No 243
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=25.57 E-value=6.4e+02 Score=24.61 Aligned_cols=145 Identities=18% Similarity=0.214 Sum_probs=79.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCccCcCCCChHHHHHHHHhccC-CC-CcEEEEeccCcccCCCcccCCCCCHHHHHHHHH
Q 019222 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQL-PR-DKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCE 117 (344)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lG~~l~~~-~R-~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 117 (344)
......+.++.+++.|. .||.+...|-.+++.|.+. +. +.+-.++- ..|....+++
T Consensus 70 ~~p~V~~Av~~~l~~G~-------~fg~Pte~Ei~~Aell~~~~p~~e~vrfvnS---------------GTEAtmsAiR 127 (432)
T COG0001 70 AHPAVVEAVQEQLERGL-------SFGAPTELEVELAELLIERVPSIEKVRFVNS---------------GTEATMSAIR 127 (432)
T ss_pred CCHHHHHHHHHHHHhcC-------CCCCCCHHHHHHHHHHHHhcCcccEEEEecc---------------hhHHHHHHHH
Confidence 44568888999999996 6776677888999998775 33 33333222 2355566666
Q ss_pred HHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcC-------ceeeEec----------CCC-cHHHHHHHhhcC-
Q 019222 118 ASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG-------KIKYIGL----------SEA-SADTIRRAHAVH- 178 (344)
Q Consensus 118 ~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G-------~ir~iGv----------S~~-~~~~l~~~~~~~- 178 (344)
-...--|.|.|=.+-=+....... -|++.| .-.+-|| ..| +.+.++++.+..
T Consensus 128 lARa~TgR~kIikF~G~YHG~~D~---------~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~yND~~al~~~~~~~g 198 (432)
T COG0001 128 LARAYTGRDKIIKFEGCYHGHSDS---------LLVKAGSGAATLGSPSSPGVPADVAKHTLVLPYNDLEALEEAFEEYG 198 (432)
T ss_pred HHHHhhCCCeEEEEcCCCCCCccH---------HHhhcCcCcccCCCCCCCCCChhhhccEEEecCCCHHHHHHHHHHcC
Confidence 666666666554332111111100 011111 0111112 122 455666666654
Q ss_pred -CceEEee-----eccccccccc--cchHHHHHHhCCcEEEcccC
Q 019222 179 -PITAVQM-----EYSLWTREIE--DDIIPLCRELGIGIVAYSPL 215 (344)
Q Consensus 179 -~~~~~q~-----~~n~~~~~~~--~~l~~~~~~~gi~v~a~spl 215 (344)
.+.++.+ ...+..+..+ ..+.+.|+++|+.+|-=...
T Consensus 199 ~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEVi 243 (432)
T COG0001 199 DDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVI 243 (432)
T ss_pred CcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecch
Confidence 4544443 3334333322 67999999999988754443
No 244
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=25.44 E-value=5.9e+02 Score=24.14 Aligned_cols=23 Identities=9% Similarity=0.076 Sum_probs=15.0
Q ss_pred CCHHHHHHHHH-------HHHHcCCCEEeC
Q 019222 39 LSHEVGCSIIK-------ETFNRGITLFDT 61 (344)
Q Consensus 39 ~~~~~~~~~l~-------~A~~~Gi~~~Dt 61 (344)
++.++..++++ .|.++|+..++-
T Consensus 134 mt~~eI~~ii~~f~~AA~~a~~aGfDgVei 163 (361)
T cd04747 134 MTEADIDDVIAAFARAAADARRLGFDGIEL 163 (361)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 56666654444 445689998874
No 245
>PRK07094 biotin synthase; Provisional
Probab=25.31 E-value=5.2e+02 Score=23.65 Aligned_cols=96 Identities=20% Similarity=0.220 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCc----cCcCCCChHHHHHHHHhccC-CCCcEEEEeccCcccCCCcccCCCCCHHHHHH
Q 019222 40 SHEVGCSIIKETFNRGITLFDTS----DVYGVDHDNEIMVGKALKQL-PRDKIQLATKFGCFMLDGVSIGVKGSPEYVRK 114 (344)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA----~~Yg~~g~sE~~lG~~l~~~-~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~ 114 (344)
+.++..+.++.+.+.|++.|--. +.|. ...+-+.++.. .+..+.+..-.+ ..+.+.+
T Consensus 71 s~eei~~~~~~~~~~g~~~i~l~gG~~~~~~-----~~~l~~l~~~i~~~~~l~i~~~~g-----------~~~~e~l-- 132 (323)
T PRK07094 71 SPEEILECAKKAYELGYRTIVLQSGEDPYYT-----DEKIADIIKEIKKELDVAITLSLG-----------ERSYEEY-- 132 (323)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCCCCC-----HHHHHHHHHHHHccCCceEEEecC-----------CCCHHHH--
Confidence 67788888899999999877422 2232 22333344332 112343332111 1133322
Q ss_pred HHHHHHhhcCCCcceEEEecCC--------CCCCCHHHHHHHHHHHHHcCc
Q 019222 115 CCEASLKRLDVDYIDLYYQHRV--------DTSVSIEDTMGELKKLVEEGK 157 (344)
Q Consensus 115 ~~~~sL~~L~~d~iDl~~lH~~--------~~~~~~~e~~~~L~~l~~~G~ 157 (344)
+.|++.|++.+-+ -+... ......++.+++++.+++.|.
T Consensus 133 ---~~Lk~aG~~~v~~-glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi 179 (323)
T PRK07094 133 ---KAWKEAGADRYLL-RHETADKELYAKLHPGMSFENRIACLKDLKELGY 179 (323)
T ss_pred ---HHHHHcCCCEEEe-ccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCC
Confidence 3456677665542 11111 123456778888888888875
No 246
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=25.27 E-value=4.7e+02 Score=23.11 Aligned_cols=50 Identities=12% Similarity=0.102 Sum_probs=29.8
Q ss_pred HHHHHHHhhcCCceEEeeeccc-------cccccccchHHHHHHhCCcEEEcccCcc
Q 019222 168 ADTIRRAHAVHPITAVQMEYSL-------WTREIEDDIIPLCRELGIGIVAYSPLGR 217 (344)
Q Consensus 168 ~~~l~~~~~~~~~~~~q~~~n~-------~~~~~~~~l~~~~~~~gi~v~a~spl~~ 217 (344)
.++.-+.++...++.+++..+. +....-.++.+.++++|+.+.++.|...
T Consensus 15 l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~ 71 (275)
T PRK09856 15 IEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETN 71 (275)
T ss_pred HHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCccc
Confidence 3444444455667777763221 1111125678899999999998887654
No 247
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=25.13 E-value=3.9e+02 Score=21.97 Aligned_cols=98 Identities=16% Similarity=0.074 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCccCcCCCChHHHHHHHHhccCCCC-cEEEEeccCcccCCCcccCCCCCHHHHHHHHHH
Q 019222 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRD-KIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEA 118 (344)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lG~~l~~~~R~-~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 118 (344)
+.+...++++.+++.|++-+-+.. ..+-.+.+. .++ ++-|..+++..... ...+...+.++.
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g---------~~i~~~~~~-~~~~~~~v~~~v~~~~~~-------~~~~~~~~~a~~ 73 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP---------GYVRLAADA-LAGSDVPVIVVVGFPTGL-------TTTEVKVAEVEE 73 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH---------HHHHHHHHH-hCCCCCeEEEEecCCCCC-------CcHHHHHHHHHH
Confidence 678889999999999998876542 223333322 223 56677777654210 124445555555
Q ss_pred HHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHc
Q 019222 119 SLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEE 155 (344)
Q Consensus 119 sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~ 155 (344)
. .++|.|.+.+..-+........+++.+.++++.+.
T Consensus 74 a-~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~ 109 (201)
T cd00945 74 A-IDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEA 109 (201)
T ss_pred H-HHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHH
Confidence 4 44577666553222211211245566666665554
No 248
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=25.08 E-value=1.5e+02 Score=25.66 Aligned_cols=88 Identities=13% Similarity=0.161 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCceeeEecCCC-cHHHHHHHhhcCCceEEeee
Q 019222 108 SPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEA-SADTIRRAHAVHPITAVQME 186 (344)
Q Consensus 108 ~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~q~~ 186 (344)
+++... .+-+.|-+-|+.-+-+=+ +. ...++.+++++++..=-.||.-+- +.++++.+++.. -+++
T Consensus 18 ~~e~a~-~~~~al~~~Gi~~iEit~-~t-------~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aG-A~Fi--- 84 (204)
T TIGR01182 18 DVDDAL-PLAKALIEGGLRVLEVTL-RT-------PVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAG-AQFI--- 84 (204)
T ss_pred CHHHHH-HHHHHHHHcCCCEEEEeC-CC-------ccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcC-CCEE---
Confidence 344333 344455666666555422 22 235566666666543346888875 888888887752 1222
Q ss_pred ccccccccccchHHHHHHhCCcEEE
Q 019222 187 YSLWTREIEDDIIPLCRELGIGIVA 211 (344)
Q Consensus 187 ~n~~~~~~~~~l~~~~~~~gi~v~a 211 (344)
.++ ....+++++|+++||.+++
T Consensus 85 vsP---~~~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 85 VSP---GLTPELAKHAQDHGIPIIP 106 (204)
T ss_pred ECC---CCCHHHHHHHHHcCCcEEC
Confidence 122 2246899999999998887
No 249
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=24.83 E-value=6e+02 Score=24.73 Aligned_cols=18 Identities=28% Similarity=0.259 Sum_probs=9.3
Q ss_pred HHHHHHhccCCCCcEEEEec
Q 019222 73 IMVGKALKQLPRDKIQLATK 92 (344)
Q Consensus 73 ~~lG~~l~~~~R~~~~I~tK 92 (344)
+.|.+.|...+++ +|.|-
T Consensus 92 ~~VAklInAd~~d--IiFts 109 (428)
T KOG1549|consen 92 EQVAKLINADPSD--IVFTS 109 (428)
T ss_pred HHHHHHhCCCCCc--EEEeC
Confidence 4566666553444 44444
No 250
>PRK00499 rnpA ribonuclease P; Reviewed
Probab=24.72 E-value=3.2e+02 Score=20.91 Aligned_cols=63 Identities=14% Similarity=0.149 Sum_probs=43.3
Q ss_pred CCCcEEEEeccCcccCCCcccCCCCCHHHHHHHHHHHHhhcCC---CcceEEEecCCCCC-CCHHHHHHHHHHHHHc
Q 019222 83 PRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDV---DYIDLYYQHRVDTS-VSIEDTMGELKKLVEE 155 (344)
Q Consensus 83 ~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~---d~iDl~~lH~~~~~-~~~~e~~~~L~~l~~~ 155 (344)
.|=-+.|+-|++.. ..+..+++.+.+.++.... ...|++++-.+... .+..++.+.|..|.+.
T Consensus 38 ~R~GisVsKKvgkA----------V~RNriKR~lRE~~R~~~~~~~~~~d~v~i~r~~~~~~~~~~l~~~l~~ll~k 104 (114)
T PRK00499 38 FRVGISVSKKVGNA----------VVRNRIKRLIRESFRELKDEIKKGYDFVVIARKPAAELDYKEIKKSLIHVLKL 104 (114)
T ss_pred cEEEEEEecccCch----------hhHhHHHHHHHHHHHHhhhcccCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 45456677776542 3678888888888886642 35699998877643 4677777777776654
No 251
>PF10171 DUF2366: Uncharacterised conserved protein (DUF2366); InterPro: IPR019322 This is a set of proteins conserved from nematodes to humans. The function is not known.
Probab=24.59 E-value=1.6e+02 Score=24.71 Aligned_cols=40 Identities=20% Similarity=0.329 Sum_probs=30.0
Q ss_pred ceEEEecCCCCCCCHHHHHHHHHHHHHcCceeeEecCCCc
Q 019222 128 IDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEAS 167 (344)
Q Consensus 128 iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir~iGvS~~~ 167 (344)
-++++++.........+-+..|+.+..+|++|++-+--++
T Consensus 78 n~l~lv~~~~rNp~S~~hvq~l~~l~nqg~Lr~~nLG~~S 117 (173)
T PF10171_consen 78 NDLLLVSPAIRNPTSDKHVQRLMRLRNQGRLRYLNLGLFS 117 (173)
T ss_pred CceeccChhhcCchHHHHHHHHHHHhcCCceEEeeeeeEE
Confidence 4677887655555566789999999999999988654443
No 252
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=24.45 E-value=1.8e+02 Score=26.57 Aligned_cols=61 Identities=16% Similarity=0.137 Sum_probs=44.8
Q ss_pred HHHHHHHHhhcCCCcceEEEecCCCCCCCH---HHHHHHHHHHHHcCceeeEecCCCcHHHHHHHhh
Q 019222 113 RKCCEASLKRLDVDYIDLYYQHRVDTSVSI---EDTMGELKKLVEEGKIKYIGLSEASADTIRRAHA 176 (344)
Q Consensus 113 ~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~---~e~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~ 176 (344)
++.+.-.+.-++ ..++++|..|....|. .++++.|.++.++|. +.|=+|+|..+.++.+++
T Consensus 142 kqrl~ia~aL~~--~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~-~tvlissH~l~e~~~~~d 205 (293)
T COG1131 142 KQRLSIALALLH--DPELLILDEPTSGLDPESRREIWELLRELAKEGG-VTILLSTHILEEAEELCD 205 (293)
T ss_pred HHHHHHHHHHhc--CCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCC-cEEEEeCCcHHHHHHhCC
Confidence 334444444443 4488888888776654 478999999999997 678899999999888754
No 253
>PRK03459 rnpA ribonuclease P; Reviewed
Probab=24.39 E-value=3.5e+02 Score=21.17 Aligned_cols=63 Identities=8% Similarity=0.001 Sum_probs=44.2
Q ss_pred CCCcEEEEeccCcccCCCcccCCCCCHHHHHHHHHHHHhhcCCC---cceEEEecCCCCC-CCHHHHHHHHHHHHHc
Q 019222 83 PRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVD---YIDLYYQHRVDTS-VSIEDTMGELKKLVEE 155 (344)
Q Consensus 83 ~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d---~iDl~~lH~~~~~-~~~~e~~~~L~~l~~~ 155 (344)
+|=-+.|+-|+|.- ..+..+++.+.++.+.+..+ -.|++++-.+... .+..++.+.|+.+.+.
T Consensus 48 ~R~G~~VsKKvG~A----------V~RNRiKR~lRe~~R~~~~~l~~g~D~Viiar~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03459 48 PRFGLVVSKAVGNA----------VIRHRVSRRLRHICADIVDQVPETHHVVIRALPGAATASSAELERDVRAGLGK 114 (122)
T ss_pred CEEEEEEeeeccch----------hHHHHHHHHHHHHHHHhhhccCCCcEEEEEECcccccCCHHHHHHHHHHHHHH
Confidence 55557777787753 26788888888888877643 4699998877643 4677777777776554
No 254
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=24.38 E-value=5.1e+02 Score=23.09 Aligned_cols=56 Identities=14% Similarity=0.194 Sum_probs=41.2
Q ss_pred HHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCceeeEecCCCcHHHHHHHh
Q 019222 117 EASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAH 175 (344)
Q Consensus 117 ~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~ 175 (344)
.+.+...+...=|+++.-.....+ .+++.+++.+++.| +.-|++++.....+.+..
T Consensus 108 ~~~l~a~~l~~~DvvI~IS~SG~T--~~vi~al~~Ak~~G-a~~I~It~~~~s~L~~~a 163 (257)
T cd05007 108 AADLQAINLTERDVVIGIAASGRT--PYVLGALRYARARG-ALTIGIACNPGSPLLQLA 163 (257)
T ss_pred HHHHHHcCCCCCCEEEEEeCCCCC--HHHHHHHHHHHHCC-CeEEEEECCCCChhHHhC
Confidence 334445666677998887765554 36999999999998 778999988766666653
No 255
>PRK04527 argininosuccinate synthase; Provisional
Probab=24.35 E-value=3.3e+02 Score=26.29 Aligned_cols=75 Identities=13% Similarity=-0.000 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHHcCCC---EEeCccCcCCCChHHHHHHHHhccC-CCCcEEEEeccCcccCCCcccCCCCCHHHHHHH
Q 019222 40 SHEVGCSIIKETFNRGIT---LFDTSDVYGVDHDNEIMVGKALKQL-PRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKC 115 (344)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~---~~DtA~~Yg~~g~sE~~lG~~l~~~-~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~ 115 (344)
..++..++-+.|.+.|+. .+|+-..|- |.++-.+++.. ..+ |.. + -...++..+-+.
T Consensus 40 ~~~El~~a~~~A~~lG~~~~~viD~~eef~-----e~vi~p~i~aNa~y~--------G~y-P-----l~~~nR~~~~~~ 100 (400)
T PRK04527 40 DAEERDFIEKRAAELGAASHVTVDGGPAIW-----EGFVKPLVWAGEGYQ--------GQY-P-----LLVSDRYLIVDA 100 (400)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEecCHHHHH-----HHHHHHHHhcchhhc--------CCC-C-----CccccHHHHHHH
Confidence 356677777888899985 566665553 56777666531 000 000 0 011255556667
Q ss_pred HHHHHhhcCCCcceEEEecCCC
Q 019222 116 CEASLKRLDVDYIDLYYQHRVD 137 (344)
Q Consensus 116 ~~~sL~~L~~d~iDl~~lH~~~ 137 (344)
+-+..+++|.++ ..|...
T Consensus 101 l~e~A~~~G~~~----IA~G~t 118 (400)
T PRK04527 101 ALKRAEELGTRI----IAHGCT 118 (400)
T ss_pred HHHHHHHCCCCE----EEecCc
Confidence 777778888764 577653
No 256
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=24.29 E-value=4.6e+02 Score=22.48 Aligned_cols=134 Identities=13% Similarity=0.045 Sum_probs=66.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCc----------cCcCCC-ChHHHHHHHHhccC-CCCcEEEEeccCcccCCCcccCCCC
Q 019222 40 SHEVGCSIIKETFNRGITLFDTS----------DVYGVD-HDNEIMVGKALKQL-PRDKIQLATKFGCFMLDGVSIGVKG 107 (344)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA----------~~Yg~~-g~sE~~lG~~l~~~-~R~~~~I~tK~~~~~~~~~~~~~~~ 107 (344)
+.++..+..+.+.++|+..||-- +.||.. ...-+.+-+.++.. ..-.+-|+.|+...+. .
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~--------~ 136 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWD--------D 136 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccC--------C
Confidence 56778888888889999999842 235420 00123333444332 1111446666543221 0
Q ss_pred CHHHHHHHHHHHHhhcCCCcceEEEecCCCCCC--CHHHHHHHHHHHHHcCceeeEecCCC-cHHHHHHHhhcCCceEEe
Q 019222 108 SPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSV--SIEDTMGELKKLVEEGKIKYIGLSEA-SADTIRRAHAVHPITAVQ 184 (344)
Q Consensus 108 ~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~--~~~e~~~~L~~l~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~q 184 (344)
. +...+ +-+.|+..|+|+ +.+|...... .....|+.+.++++.-.+--++.... +.+++.+++.....+.++
T Consensus 137 ~-~~~~~-~~~~l~~~Gvd~---i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~ 211 (231)
T cd02801 137 E-EETLE-LAKALEDAGASA---LTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVM 211 (231)
T ss_pred c-hHHHH-HHHHHHHhCCCE---EEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEE
Confidence 1 12222 223355567544 5567543211 00123555666666555555555543 566666665554555555
Q ss_pred ee
Q 019222 185 ME 186 (344)
Q Consensus 185 ~~ 186 (344)
+-
T Consensus 212 ig 213 (231)
T cd02801 212 IG 213 (231)
T ss_pred Ec
Confidence 43
No 257
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=24.28 E-value=1.7e+02 Score=26.10 Aligned_cols=98 Identities=18% Similarity=0.185 Sum_probs=51.6
Q ss_pred HHHHHHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHc-CceeeEecC-------CCcHHHHHHHhhcCCceEEe
Q 019222 113 RKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEE-GKIKYIGLS-------EASADTIRRAHAVHPITAVQ 184 (344)
Q Consensus 113 ~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~-G~ir~iGvS-------~~~~~~l~~~~~~~~~~~~q 184 (344)
...+++.|+-.| +|||++=+-|-......+++++..-++.++ |.--+.|=. .-..+++-+.++...|+++.
T Consensus 24 ~~~~~dlLe~ag-~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGtl~E~a~~q~~~~~yl~~~k~lGf~~IE 102 (244)
T PF02679_consen 24 LRYLEDLLESAG-DYIDFLKFGWGTSALYPEEILKEKIDLAHSHGVYVYPGGTLFEVAYQQGKFDEYLEECKELGFDAIE 102 (244)
T ss_dssp HHHHHHHHHHHG-GG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHHHHHHHHTT-HHHHHHHHHHCT-SEEE
T ss_pred HHHHHHHHHHhh-hhccEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHHHHHHHhcChHHHHHHHHHHcCCCEEE
Confidence 457888999999 999999999876554444555555554444 333233311 11222333334445677777
Q ss_pred eeccccccccc--cchHHHHHHhCCcEEE
Q 019222 185 MEYSLWTREIE--DDIIPLCRELGIGIVA 211 (344)
Q Consensus 185 ~~~n~~~~~~~--~~l~~~~~~~gi~v~a 211 (344)
+.-..+.-..+ ..+++.+++.|..|++
T Consensus 103 iSdGti~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 103 ISDGTIDLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp E--SSS---HHHHHHHHHHHCCTTSEEEE
T ss_pred ecCCceeCCHHHHHHHHHHHHHCCCEEee
Confidence 66555543322 4567777777766655
No 258
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=24.27 E-value=5.9e+02 Score=24.87 Aligned_cols=156 Identities=13% Similarity=0.114 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHc--CCCEEe-CccCcCCCChHHHHHHHHhccCCCCcEEEEeccCcccCCCcccCCCCCHHHHHHH
Q 019222 39 LSHEVGCSIIKETFNR--GITLFD-TSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKC 115 (344)
Q Consensus 39 ~~~~~~~~~l~~A~~~--Gi~~~D-tA~~Yg~~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~ 115 (344)
.+.+...+-++...+. |++.|- ..+.+.. ....+-+.++...+..+.+..-..... +++.+..-
T Consensus 227 rs~e~V~~Ei~~~~~~~~~~~~i~f~Dd~f~~---~~~~~~~l~~~l~~~~i~~~~~~~~~~----------~~e~l~~l 293 (472)
T TIGR03471 227 RSAESVIEEVKYALENFPEVREFFFDDDTFTD---DKPRAEEIARKLGPLGVTWSCNARANV----------DYETLKVM 293 (472)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEeCCCCCC---CHHHHHHHHHHHhhcCceEEEEecCCC----------CHHHHHHH
Q ss_pred HHHHHhhc--CCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCceee----EecCCCcHHHHHHHhhc-CCceEEeeecc
Q 019222 116 CEASLKRL--DVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKY----IGLSEASADTIRRAHAV-HPITAVQMEYS 188 (344)
Q Consensus 116 ~~~sL~~L--~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir~----iGvS~~~~~~l~~~~~~-~~~~~~q~~~n 188 (344)
-+.-+.++ |++..|==.+.........+++.++++.+++.|.--. +|+-..+.+.+.+.++. .......+.++
T Consensus 294 ~~aG~~~v~iGiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~~l~~~~~~~~ 373 (472)
T TIGR03471 294 KENGLRLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKELNPHTIQVS 373 (472)
T ss_pred HHcCCCEEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCceeee
Q ss_pred ccccccccchHHHHHHhCC
Q 019222 189 LWTREIEDDIIPLCRELGI 207 (344)
Q Consensus 189 ~~~~~~~~~l~~~~~~~gi 207 (344)
++.+.+...+.+.+++.|.
T Consensus 374 ~l~P~PGT~l~~~~~~~g~ 392 (472)
T TIGR03471 374 LAAPYPGTELYDQAKQNGW 392 (472)
T ss_pred ecccCCCcHHHHHHHHCCC
No 259
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=24.18 E-value=3.1e+02 Score=24.33 Aligned_cols=97 Identities=19% Similarity=0.166 Sum_probs=59.6
Q ss_pred HHHHHHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHH-HHHcCceeeEecCCC-cH-------HHHHHHhhcCCceEE
Q 019222 113 RKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKK-LVEEGKIKYIGLSEA-SA-------DTIRRAHAVHPITAV 183 (344)
Q Consensus 113 ~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~-l~~~G~ir~iGvS~~-~~-------~~l~~~~~~~~~~~~ 183 (344)
.+.+++.|+-+| +|||.+=+-|-......++.++..-+ +++-|.--+.| .++ .. ++.-+.+..-.++++
T Consensus 11 ~~~~~d~Le~~g-~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~V~v~~G-Gtl~E~~~~q~~~~~Yl~~~k~lGf~~I 88 (237)
T TIGR03849 11 PKFVEDYLKVCG-DYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPG-GTLFEIAHSKGKFDEYLNECDELGFEAV 88 (237)
T ss_pred HHHHHHHHHHhh-hheeeEEecCceEeeccHHHHHHHHHHHHHcCCeEeCC-ccHHHHHHHhhhHHHHHHHHHHcCCCEE
Confidence 457888999999 99999999887655544455555544 45556655666 221 11 111222333567777
Q ss_pred eeeccccccccc--cchHHHHHHhCCcEEE
Q 019222 184 QMEYSLWTREIE--DDIIPLCRELGIGIVA 211 (344)
Q Consensus 184 q~~~n~~~~~~~--~~l~~~~~~~gi~v~a 211 (344)
.+.-..+.-..+ ..+++.++++|..+.+
T Consensus 89 EiS~G~~~i~~~~~~rlI~~~~~~g~~v~~ 118 (237)
T TIGR03849 89 EISDGSMEISLEERCNLIERAKDNGFMVLS 118 (237)
T ss_pred EEcCCccCCCHHHHHHHHHHHHhCCCeEec
Confidence 776655544322 4578888888877764
No 260
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=24.09 E-value=2.8e+02 Score=28.62 Aligned_cols=43 Identities=14% Similarity=0.130 Sum_probs=34.4
Q ss_pred HHHHHHHHHhCC------CHHHHHHHHHHhCCCCeEeccCCCCHHHHHHh
Q 019222 254 TRLETLAAKYGC------TTPQLALAWLLHQGDDIVPIPGTTKITNLDNN 297 (344)
Q Consensus 254 ~~l~~la~~~g~------s~~q~al~w~l~~~~v~~~i~g~~~~~~l~~n 297 (344)
.+|.++|++.|. ++.++.-.|.-.... +.+..|+|+|+.+-+.
T Consensus 222 ~~L~~i~~~~~~~~~~ie~~~el~~~~~~~~~~-vgitagaStP~~~i~~ 270 (647)
T PRK00087 222 TKLYEICKSNCTNTIHIENAGELPEEWFKGVKI-IGVTAGASTPDWIIEE 270 (647)
T ss_pred HHHHHHHHHHCCCEEEECChHHCCHHHhCCCCE-EEEEeccCCCHHHHHH
Confidence 478899988874 789999999876654 6888999999977555
No 261
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=24.03 E-value=3.9e+02 Score=22.42 Aligned_cols=86 Identities=21% Similarity=0.125 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHcCCCEEeCccC-cCCCChHHHHHHHHhccCCCCcEEEEeccCcccCCCcccCCCCCHHHHHHHHHHH
Q 019222 41 HEVGCSIIKETFNRGITLFDTSDV-YGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEAS 119 (344)
Q Consensus 41 ~~~~~~~l~~A~~~Gi~~~DtA~~-Yg~~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 119 (344)
.......|+.-+..|..| .|... |+. +..|+ .+.=++|+|-.+...............+.+...++..
T Consensus 94 Pa~lK~~iD~v~~~g~~~-~~~~g~~~~--------~~~L~--gKk~~~i~t~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 162 (199)
T PF02525_consen 94 PAQLKGWIDRVFTPGFTF-YTPDGKYPS--------GGLLK--GKKALLIVTSGGPEYSYGPPGIPGRSMDHLLPYLRGI 162 (199)
T ss_dssp -HHHHHHHHHHSHTTTSE-EETTSTTCG--------EESTT--TSEEEEEEEESSSGGGGSTTSSTTSHHHHHHHHHHHH
T ss_pred ChhHHHHHHHhCcCCeee-ecccccccc--------ccccc--cccEEEEEcCCCChHHhcccCCCCCChhhhHHHHHHH
Confidence 467788888888899988 65443 321 01122 2233444444444221110001123567788889999
Q ss_pred HhhcCCCcceEEEecCCC
Q 019222 120 LKRLDVDYIDLYYQHRVD 137 (344)
Q Consensus 120 L~~L~~d~iDl~~lH~~~ 137 (344)
++-+|.+.++.+.++...
T Consensus 163 ~~~~G~~~~~~~~~~~~~ 180 (199)
T PF02525_consen 163 LKFCGIKDVESFSFEGVD 180 (199)
T ss_dssp HHHTTEEEEEEEEEESTT
T ss_pred HHhCCCceeeEEEEeCCC
Confidence 999999999999999876
No 262
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=24.03 E-value=4.7e+02 Score=22.59 Aligned_cols=149 Identities=13% Similarity=0.001 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCccCcCCCChHHHHHHHHhccCCCCcEEEEeccCcccCCCcccCCCCCHHHHHHHHHHH
Q 019222 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEAS 119 (344)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 119 (344)
+.+++.++++.|++.|+...|+-...=. ..=..+|+.. .+.+++++-= .++.+.++..+...
T Consensus 13 D~~~~~~~l~~al~~~~~~~~ii~~~l~--p~m~~vG~~w---~~gei~vaqe-------------~~as~~~~~~l~~l 74 (213)
T cd02069 13 IRDGIEEDTEEARQQYARPLEIINGPLM--DGMKVVGDLF---GAGKMFLPQV-------------LKSARVMKAAVAYL 74 (213)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHH--HHHHHHHHHH---ccCCCcHHHH-------------HHHHHHHHHHHHHH
Confidence 7788999999999999765553211100 0122234333 3333443311 12344455555555
Q ss_pred ---HhhcCCC--cceEEEecCCCCCCCHHHHHHHHHHHHHcCc-eeeEecCCCcHHHHHHHhhcCCceEEeeeccccccc
Q 019222 120 ---LKRLDVD--YIDLYYQHRVDTSVSIEDTMGELKKLVEEGK-IKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE 193 (344)
Q Consensus 120 ---L~~L~~d--~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~ 193 (344)
++..... ..--+++-.+..+.+--...=.-.-|+..|. |-++|... +++.+.+.....+++++.+....-...
T Consensus 75 ~~~l~~~~~~~~~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~v-p~e~~v~~~~~~~~~~V~lS~~~~~~~ 153 (213)
T cd02069 75 EPYMEKEKGENSSKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMV-PIEKILEAAKEHKADIIGLSGLLVPSL 153 (213)
T ss_pred HHHHhhccccCCCCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCC-CHHHHHHHHHHcCCCEEEEccchhccH
Confidence 3322210 1112333333333222222222233556675 77778654 556666666666777777766554332
Q ss_pred cc-cchHHHHHHhCC
Q 019222 194 IE-DDIIPLCRELGI 207 (344)
Q Consensus 194 ~~-~~l~~~~~~~gi 207 (344)
.. .++++.+++.+.
T Consensus 154 ~~~~~~i~~L~~~~~ 168 (213)
T cd02069 154 DEMVEVAEEMNRRGI 168 (213)
T ss_pred HHHHHHHHHHHhcCC
Confidence 22 567888888765
No 263
>PTZ00413 lipoate synthase; Provisional
Probab=24.01 E-value=6.5e+02 Score=24.20 Aligned_cols=160 Identities=19% Similarity=0.262 Sum_probs=85.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCccCcCC---CChHHHHHHHHhccCC--CCcEEEEeccCcccCCCcccCCCCCHHHHH
Q 019222 39 LSHEVGCSIIKETFNRGITLFDTSDVYGV---DHDNEIMVGKALKQLP--RDKIQLATKFGCFMLDGVSIGVKGSPEYVR 113 (344)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~---~g~sE~~lG~~l~~~~--R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~ 113 (344)
.+.++..++-+.+.+.|++|+=.+..-++ ++.++ .+-+.++... ..++-|..=++... .+.
T Consensus 177 lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL~D~ga~-~~a~~I~~Ir~~~p~~~IevligDf~---------g~~---- 242 (398)
T PTZ00413 177 LDPNEPEKVAKAVAEMGVDYIVMTMVDRDDLPDGGAS-HVARCVELIKESNPELLLEALVGDFH---------GDL---- 242 (398)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEEEcCCCCChhhHH-HHHHHHHHHHccCCCCeEEEcCCccc---------cCH----
Confidence 47888888888888999998765555442 13344 3444554421 22455555444221 122
Q ss_pred HHHHHHHhhcCCCcceEEEecCCCC-----------CCCHHHHHHHHHHHHHc--Cceee-----EecCCCcHHHHHHHh
Q 019222 114 KCCEASLKRLDVDYIDLYYQHRVDT-----------SVSIEDTMGELKKLVEE--GKIKY-----IGLSEASADTIRRAH 175 (344)
Q Consensus 114 ~~~~~sL~~L~~d~iDl~~lH~~~~-----------~~~~~e~~~~L~~l~~~--G~ir~-----iGvS~~~~~~l~~~~ 175 (344)
+.|++|.---+|.| =|+.+. ....++.|+.|+..++. |.|.- +|+.....+.++-+.
T Consensus 243 ----e~l~~L~eAG~dvy-nHNLETv~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLGET~eEvie~m~ 317 (398)
T PTZ00413 243 ----KSVEKLANSPLSVY-AHNIECVERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGETEEEVRQTLR 317 (398)
T ss_pred ----HHHHHHHhcCCCEE-ecccccCHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceEeeeeEecCCCCHHHHHHHHH
Confidence 23333333344533 355321 23578889999988874 33322 565555444433332
Q ss_pred hc--CCceEEee-ecc-------cccc----ccccchHHHHHHhCCcEEEcccCcc
Q 019222 176 AV--HPITAVQM-EYS-------LWTR----EIEDDIIPLCRELGIGIVAYSPLGR 217 (344)
Q Consensus 176 ~~--~~~~~~q~-~~n-------~~~~----~~~~~l~~~~~~~gi~v~a~spl~~ 217 (344)
.. ..++++.+ +|= ++.+ +....+-+.+.+.|...++-+||-.
T Consensus 318 dLrelGVDivtIGQYL~Ps~~h~~V~~yv~P~~F~~~~~~a~~~Gf~~v~sgPlVR 373 (398)
T PTZ00413 318 DLRTAGVSAVTLGQYLQPTKTRLKVSRYAHPKEFEMWEEEAMKMGFLYCASGPLVR 373 (398)
T ss_pred HHHHcCCcEEeeccccCCCcccCCceeccCHHHHHHHHHHHHHcCCceEEecCccc
Confidence 22 33443333 211 0111 1114567778888999999988874
No 264
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=23.90 E-value=5.2e+02 Score=23.04 Aligned_cols=72 Identities=13% Similarity=0.148 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHcC-c--eeeEecCCC----cHHHHHHHhhcCCceEEeeeccccccccccchHHHHHHhCCcEE-Ecc
Q 019222 142 IEDTMGELKKLVEEG-K--IKYIGLSEA----SADTIRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIV-AYS 213 (344)
Q Consensus 142 ~~e~~~~L~~l~~~G-~--ir~iGvS~~----~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~-a~s 213 (344)
++.+++.+++++++. . +-+.+..|- ..+.+-+.+....++.+-++.-+... ..++++.|+++|+..+ ..+
T Consensus 71 ~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee--~~~~~~~~~~~gl~~i~lv~ 148 (256)
T TIGR00262 71 PEKCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEE--SGDLVEAAKKHGVKPIFLVA 148 (256)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHH--HHHHHHHHHHCCCcEEEEEC
Confidence 456788888888653 2 225555552 22444444444566666666555432 3578999999998854 444
Q ss_pred cC
Q 019222 214 PL 215 (344)
Q Consensus 214 pl 215 (344)
|-
T Consensus 149 P~ 150 (256)
T TIGR00262 149 PN 150 (256)
T ss_pred CC
Confidence 43
No 265
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=23.73 E-value=6.5e+02 Score=24.09 Aligned_cols=86 Identities=12% Similarity=0.079 Sum_probs=50.7
Q ss_pred eEEEecCCCCCCCHHHHHHHHHHHHHcCceeeEecCCCcHHHHHHHhhc-CCceEEeeeccccccccc-cchHHHHHHhC
Q 019222 129 DLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV-HPITAVQMEYSLWTREIE-DDIIPLCRELG 206 (344)
Q Consensus 129 Dl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~-~~l~~~~~~~g 206 (344)
|-+++..|. ...++..++.+.+.+.++.+-+...+.+.+++++.. .+..++..+-|+.-.-.+ .++.+.|+++|
T Consensus 100 D~Vvv~~p~----Y~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~g 175 (405)
T PRK08776 100 DTLVVPHDA----YGGSWRLFNALAKKGHFALITADLTDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKVG 175 (405)
T ss_pred CEEEEccCC----chHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHHHcC
Confidence 555554432 234555555655555566666655577778777642 334455555565433222 56889999999
Q ss_pred CcEEEcccCccc
Q 019222 207 IGIVAYSPLGRG 218 (344)
Q Consensus 207 i~v~a~spl~~G 218 (344)
+.++.=...+.+
T Consensus 176 i~vIvD~a~a~~ 187 (405)
T PRK08776 176 ALTVVDNTFLSP 187 (405)
T ss_pred CEEEEECCCccc
Confidence 888865554433
No 266
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=23.73 E-value=4.6e+02 Score=22.31 Aligned_cols=99 Identities=17% Similarity=0.143 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCccCcCCCChHHHHHHHHhccCCCCcEEEEeccCcccCCCcccCCCCCHHHHHHHHHHH
Q 019222 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEAS 119 (344)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 119 (344)
..++..++++.|.+.|+.-+=+.+.+ .+ ...+.++. ..+.+.+=++.... ..+.+....++++.
T Consensus 15 t~~~i~~~~~~a~~~~~~av~v~p~~-----v~-~~~~~l~~---~~~~v~~~~~fp~g-------~~~~~~k~~eve~A 78 (203)
T cd00959 15 TEEDIRKLCDEAKEYGFAAVCVNPCF-----VP-LAREALKG---SGVKVCTVIGFPLG-------ATTTEVKVAEAREA 78 (203)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcHHH-----HH-HHHHHcCC---CCcEEEEEEecCCC-------CCcHHHHHHHHHHH
Confidence 67889999999999887666444322 22 23344432 34666665544332 22556677778887
Q ss_pred HhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHc
Q 019222 120 LKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEE 155 (344)
Q Consensus 120 L~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~ 155 (344)
++ +|.|-+|+++--..-...+.++.++.+.++++.
T Consensus 79 ~~-~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~ 113 (203)
T cd00959 79 IA-DGADEIDMVINIGALKSGDYEAVYEEIAAVVEA 113 (203)
T ss_pred HH-cCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHh
Confidence 76 699999987654332234456677777777665
No 267
>COG3215 PilZ Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=23.70 E-value=3.1e+02 Score=20.86 Aligned_cols=80 Identities=19% Similarity=0.139 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCccCcCCCChHHHHHHHHhccCCCCcEEEEeccCcccCCCc--c-------cCCCCCHH
Q 019222 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGV--S-------IGVKGSPE 110 (344)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~--~-------~~~~~~~~ 110 (344)
|..-..+.---++++|.-|+-|-..|.- | .|-.+---|-+ ..+++++++|+.+..+... + ....-.-.
T Consensus 18 D~a~LYsaYMpfl~nGglFVpTnk~y~i-G-~evfl~l~lld-~pekl~vagkVaWitP~gt~sr~~GiGv~f~d~e~g~ 94 (117)
T COG3215 18 DMALLYSAYMPFLENGGLFVPTNKVYSI-G-EEVFLLLELLD-FPEKLPVAGKVAWITPVGTQSRPAGIGVQFTDGENGL 94 (117)
T ss_pred hHHHHHHHHhHHHhcCcEEcccCCcccc-c-hhhhhhhhhcC-chhhccccceEEEEccCCCCCCCCceeeeccCCCchh
Confidence 4444455555667999999999999964 1 14343333332 5578999999854332210 0 01122234
Q ss_pred HHHHHHHHHHhh
Q 019222 111 YVRKCCEASLKR 122 (344)
Q Consensus 111 ~i~~~~~~sL~~ 122 (344)
.++.++|.-|..
T Consensus 95 ~vr~~IE~~Lg~ 106 (117)
T COG3215 95 KVRNQIETLLGG 106 (117)
T ss_pred hHHHHHHHHHHh
Confidence 677777777643
No 268
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=23.61 E-value=2.5e+02 Score=24.09 Aligned_cols=85 Identities=12% Similarity=0.028 Sum_probs=51.3
Q ss_pred CcceEEEecCCCCCCCHHHHHHHHHHHHHcCceeeEecCCCcHHHHHHHhhcCCceEEeeecc-ccccccccchHHHHHH
Q 019222 126 DYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQMEYS-LWTREIEDDIIPLCRE 204 (344)
Q Consensus 126 d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n-~~~~~~~~~l~~~~~~ 204 (344)
.-..+..+.+.. .-+...+|.+.|-. .+-.+-.+.+.|.++++.....++-.... .-.......+++.|++
T Consensus 21 ~~~~V~~l~R~~-------~~~~~~~l~~~g~~-vv~~d~~~~~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~ 92 (233)
T PF05368_consen 21 AGFSVRALVRDP-------SSDRAQQLQALGAE-VVEADYDDPESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKA 92 (233)
T ss_dssp TTGCEEEEESSS-------HHHHHHHHHHTTTE-EEES-TT-HHHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEecc-------chhhhhhhhcccce-EeecccCCHHHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhc
Confidence 345677666653 11224556667774 46666668888888887554444333322 1111223679999999
Q ss_pred hCCcEEEcccCccc
Q 019222 205 LGIGIVAYSPLGRG 218 (344)
Q Consensus 205 ~gi~v~a~spl~~G 218 (344)
.||..+.+|.++..
T Consensus 93 agVk~~v~ss~~~~ 106 (233)
T PF05368_consen 93 AGVKHFVPSSFGAD 106 (233)
T ss_dssp HT-SEEEESEESSG
T ss_pred cccceEEEEEeccc
Confidence 99999999998754
No 269
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.40 E-value=4.4e+02 Score=24.82 Aligned_cols=79 Identities=9% Similarity=0.054 Sum_probs=50.8
Q ss_pred CCCHHHHHHHHHHHHHc-Cc---eeeEecC--CCcHHHHHHHhh---cCCceEEeeecccccccc-----c---cchHHH
Q 019222 139 SVSIEDTMGELKKLVEE-GK---IKYIGLS--EASADTIRRAHA---VHPITAVQMEYSLWTREI-----E---DDIIPL 201 (344)
Q Consensus 139 ~~~~~e~~~~L~~l~~~-G~---ir~iGvS--~~~~~~l~~~~~---~~~~~~~q~~~n~~~~~~-----~---~~l~~~ 201 (344)
..+++++.+++.++.+. |+ +-|+=+. |.+.+++.++.+ ..+..++.++||+..... . ....+.
T Consensus 222 ~~~l~el~~a~~~~~~~~grri~~EyvLl~GVNDs~e~a~~L~~~l~~~~~~vNLIPyN~v~g~~~~rp~~~~i~~f~~~ 301 (344)
T PRK14464 222 RIAPEELVELGEAYARATGYPIQYQWTLLEGVNDSDEEMDGIVRLLKGKYAVMNLIPYNSVDGDAYRRPSGERIVAMARY 301 (344)
T ss_pred CCCHHHHHHHHHHHHHHHCCEEEEEEEEeCCCCCCHHHHHHHHHHHhccccccceecCCccCCCCccCCCHHHHHHHHHH
Confidence 34688888888887544 42 2333222 456666555444 346778999999865421 1 346677
Q ss_pred HHHhCCcEEEcccCcc
Q 019222 202 CRELGIGIVAYSPLGR 217 (344)
Q Consensus 202 ~~~~gi~v~a~spl~~ 217 (344)
.+++||.+......+.
T Consensus 302 L~~~gi~~tiR~~~G~ 317 (344)
T PRK14464 302 LHRRGVLTKVRNSAGQ 317 (344)
T ss_pred HHHCCceEEEECCCCC
Confidence 7789999998888764
No 270
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=23.21 E-value=4.7e+02 Score=22.20 Aligned_cols=101 Identities=18% Similarity=0.187 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhhcCCCcceEE-EecCCCCCCCHHHHHHHHHHHHHcCceeeEecCCCcH--HHHHHHhhcCCceEEeee
Q 019222 110 EYVRKCCEASLKRLDVDYIDLY-YQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASA--DTIRRAHAVHPITAVQME 186 (344)
Q Consensus 110 ~~i~~~~~~sL~~L~~d~iDl~-~lH~~~~~~~~~e~~~~L~~l~~~G~ir~iGvS~~~~--~~l~~~~~~~~~~~~q~~ 186 (344)
+.....+...++..+..--.++ .+...........+.+.++.+++.|- .+++.++.. ..+..+ ...+++++=+.
T Consensus 98 ~~~~~~~~~~l~~~~~~~~~l~iei~e~~~~~~~~~~~~~~~~l~~~G~--~l~ld~~g~~~~~~~~l-~~~~~d~iKld 174 (240)
T cd01948 98 PDFLDRLLELLAETGLPPRRLVLEITESALIDDLEEALATLRRLRALGV--RIALDDFGTGYSSLSYL-KRLPVDYLKID 174 (240)
T ss_pred cHHHHHHHHHHHHcCCCHHHEEEEEecchhhCCHHHHHHHHHHHHHCCC--eEEEeCCCCcHhhHHHH-HhCCCCEEEEC
Confidence 4456778888888887642332 22222333445568899999999998 466666532 223333 33356666665
Q ss_pred ccccccc--------cccchHHHHHHhCCcEEEcc
Q 019222 187 YSLWTRE--------IEDDIIPLCRELGIGIVAYS 213 (344)
Q Consensus 187 ~n~~~~~--------~~~~l~~~~~~~gi~v~a~s 213 (344)
.+.+..- .-..++..|+..|+.+++-+
T Consensus 175 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~g 209 (240)
T cd01948 175 RSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAEG 209 (240)
T ss_pred HHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEEe
Confidence 5444321 11468899999999998843
No 271
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=23.15 E-value=5.5e+02 Score=23.66 Aligned_cols=107 Identities=16% Similarity=0.181 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHcCCCEEeCccCcCCCChHHHHHHHHhccCCCCcEEEEeccCcccCCCcccCCCCCHHHHHHHHHHHHh
Q 019222 42 EVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLK 121 (344)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 121 (344)
+..+++|+..-+.|+ .+|+|.. |++.+-++++-. ..-+|+|......-.. ...+.+-+. ++.. .
T Consensus 154 ~~G~~vv~~mn~lGm-iiDvSH~------s~~~~~dv~~~s--~~PviaSHsn~ral~~--h~RNltD~~----i~~i-a 217 (309)
T cd01301 154 PFGKELVREMNRLGI-IIDLSHL------SERTFWDVLDIS--NAPVIASHSNARALCD--HPRNLTDAQ----LKAI-A 217 (309)
T ss_pred HHHHHHHHHHHHcCC-EEEcCCC------CHHHHHHHHHhc--CCCEEEeccChHHhcC--CCCCCCHHH----HHHH-H
Confidence 467899999999999 9999954 577777888643 2347777755432110 011233332 2222 2
Q ss_pred hcCCCcceEEEecCC---CCCCCHHHHHHHHHHHHHcCceeeEecCC
Q 019222 122 RLDVDYIDLYYQHRV---DTSVSIEDTMGELKKLVEEGKIKYIGLSE 165 (344)
Q Consensus 122 ~L~~d~iDl~~lH~~---~~~~~~~e~~~~L~~l~~~G~ir~iGvS~ 165 (344)
+-| ..|=+.+.-.. ....++++.++.++.+.+..=+.+||+..
T Consensus 218 ~~G-Gvigi~~~~~fl~~~~~~~~~~~~~hi~~i~~l~G~dhVgiGs 263 (309)
T cd01301 218 ETG-GVIGVNFYPAFLSPGADATLDDVVRHIDYIVDLIGIDHVGLGS 263 (309)
T ss_pred HcC-CEEEEeeeHHHhCCCCCCCHHHHHHHHHHHHHhcCCCeEEECc
Confidence 333 23333222111 23467888999999999988899999976
No 272
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=23.13 E-value=1.6e+02 Score=28.04 Aligned_cols=17 Identities=24% Similarity=0.536 Sum_probs=14.6
Q ss_pred cchHHHHHHhCCcEEEc
Q 019222 196 DDIIPLCRELGIGIVAY 212 (344)
Q Consensus 196 ~~l~~~~~~~gi~v~a~ 212 (344)
+.+++.|+++||.|+.-
T Consensus 61 ~~~L~~~~~~gIkvI~N 77 (362)
T PF07287_consen 61 RPLLPAAAEKGIKVITN 77 (362)
T ss_pred HHHHHHHHhCCCCEEEe
Confidence 56899999999999885
No 273
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=22.93 E-value=5.9e+02 Score=23.29 Aligned_cols=93 Identities=11% Similarity=0.018 Sum_probs=42.9
Q ss_pred CcEEEEeccCcccCCCcccCCCCCHHHHHHHHHHHHhhcCCCcceEEEecCCCCCC----------CHHHHHHHHHHHHH
Q 019222 85 DKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSV----------SIEDTMGELKKLVE 154 (344)
Q Consensus 85 ~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~----------~~~e~~~~L~~l~~ 154 (344)
+++.|..|+.......+ ..+.+...+ +-+-|+.+|+|||++ |...... .....++.+..+++
T Consensus 207 ~d~~i~vris~~~~~~~----g~~~~e~~~-la~~l~~~G~d~i~v---s~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~ 278 (327)
T cd02803 207 PDFPVGVRLSADDFVPG----GLTLEEAIE-IAKALEEAGVDALHV---SGGSYESPPPIIPPPYVPEGYFLELAEKIKK 278 (327)
T ss_pred CCceEEEEechhccCCC----CCCHHHHHH-HHHHHHHcCCCEEEe---CCCCCcccccccCCCCCCcchhHHHHHHHHH
Confidence 45677777764321110 124443332 333456667666554 3221110 01123344445555
Q ss_pred cCceeeEecCCC-cHHHHHHHhhcCCceEEee
Q 019222 155 EGKIKYIGLSEA-SADTIRRAHAVHPITAVQM 185 (344)
Q Consensus 155 ~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~q~ 185 (344)
.=.+--++..+. +++.++++++....+.+++
T Consensus 279 ~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~i 310 (327)
T cd02803 279 AVKIPVIAVGGIRDPEVAEEILAEGKADLVAL 310 (327)
T ss_pred HCCCCEEEeCCCCCHHHHHHHHHCCCCCeeee
Confidence 444445555554 4666666666545555444
No 274
>PF14502 HTH_41: Helix-turn-helix domain
Probab=22.92 E-value=85 Score=20.30 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhCCC--HHHHHHHHHHhCCCC
Q 019222 253 YTRLETLAAKYGCT--TPQLALAWLLHQGDD 281 (344)
Q Consensus 253 ~~~l~~la~~~g~s--~~q~al~w~l~~~~v 281 (344)
++.+.++++++++| ..|-||+++-..+.|
T Consensus 6 i~tI~e~~~~~~vs~GtiQ~Alk~Le~~gaI 36 (48)
T PF14502_consen 6 IPTISEYSEKFGVSRGTIQNALKFLEENGAI 36 (48)
T ss_pred cCCHHHHHHHhCcchhHHHHHHHHHHHCCcE
Confidence 34688899999887 789999999988853
No 275
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.55 E-value=4.8e+02 Score=24.44 Aligned_cols=87 Identities=11% Similarity=0.095 Sum_probs=53.6
Q ss_pred EEecCCCCC-----------CCHHHHHHHHHHHHHcCc---eeeEecC--CCcHHHHH---HHhhcCCceEEeeeccccc
Q 019222 131 YYQHRVDTS-----------VSIEDTMGELKKLVEEGK---IKYIGLS--EASADTIR---RAHAVHPITAVQMEYSLWT 191 (344)
Q Consensus 131 ~~lH~~~~~-----------~~~~e~~~~L~~l~~~G~---ir~iGvS--~~~~~~l~---~~~~~~~~~~~q~~~n~~~ 191 (344)
+-||.++++ .+++++++++.++.+.|+ ++++=+. |.+.++++ +++...+..++.++||+..
T Consensus 208 iSLhA~~~e~r~~I~p~~~~~~le~il~ai~~~~~~~rri~ieyvLI~GvNDseeda~~La~llk~l~~~vnlI~~N~~~ 287 (336)
T PRK14470 208 ISLNAAIPWKRRALMPIEQGFPLDELVEAIREHAALRGRVTLEYVMISGVNVGEEDAAALGRLLAGIPVRLNPIAVNDAT 287 (336)
T ss_pred EecCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhCCCeEEEEEEEecccCCHHHHHHHHHHHhcCCCeEEEeccCCCC
Confidence 567887532 357889999999887754 2444333 33455544 4444455688999999854
Q ss_pred cccc----c---chHHHH--HHhCCcEEEcccCcc
Q 019222 192 REIE----D---DIIPLC--RELGIGIVAYSPLGR 217 (344)
Q Consensus 192 ~~~~----~---~l~~~~--~~~gi~v~a~spl~~ 217 (344)
.... . ...+.. +++|+.+......+.
T Consensus 288 ~~~~~p~~~~i~~f~~~l~~~~~g~~~~~R~~~G~ 322 (336)
T PRK14470 288 GRYRPPDEDEWNAFRDALARELPGTPVVRRYSGGQ 322 (336)
T ss_pred CCccCCCHHHHHHHHHHHHHccCCeEEEEECCCCC
Confidence 3211 2 334445 356888887777654
No 276
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=22.43 E-value=3.8e+02 Score=25.83 Aligned_cols=82 Identities=9% Similarity=0.080 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHcCceeeEecCCCcHHHHHHHhh--cCCceEEeeeccccccccc-cchHHHHHHhCCcEEEcccCccc
Q 019222 142 IEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHA--VHPITAVQMEYSLWTREIE-DDIIPLCRELGIGIVAYSPLGRG 218 (344)
Q Consensus 142 ~~e~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~--~~~~~~~q~~~n~~~~~~~-~~l~~~~~~~gi~v~a~spl~~G 218 (344)
...+.+.++.+.++.-|....+.....+.+.+++. ..+..++..+-|+...-.+ ..+.+.|+++|+.++.=..++.+
T Consensus 112 YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP 191 (396)
T COG0626 112 YGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATP 191 (396)
T ss_pred cchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcccc
Confidence 34456666666666666666555555544444433 3566677777777766433 46778888888777777777766
Q ss_pred ccCCC
Q 019222 219 FFAGK 223 (344)
Q Consensus 219 ~l~~~ 223 (344)
.+...
T Consensus 192 ~~q~P 196 (396)
T COG0626 192 VLQRP 196 (396)
T ss_pred cccCh
Confidence 66543
No 277
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=22.42 E-value=4.2e+02 Score=21.56 Aligned_cols=151 Identities=11% Similarity=0.076 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHcCCCEEeCccCcCCCCh-----HHHHHHHHhccCC-CCcEEEEeccCcccCCCcccCCCCCHHHHHH
Q 019222 41 HEVGCSIIKETFNRGITLFDTSDVYGVDHD-----NEIMVGKALKQLP-RDKIQLATKFGCFMLDGVSIGVKGSPEYVRK 114 (344)
Q Consensus 41 ~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~-----sE~~lG~~l~~~~-R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~ 114 (344)
.+.....++.|++.|.+.|++--..-.+|. .-..+-++|+..+ .-.+.|=.|.... .+.+.+
T Consensus 12 pent~~a~~~a~~~g~~~iE~Dv~~tkDg~~vv~Hdi~tL~e~l~~~~~~~~i~leiK~~~~------------~~~~~~ 79 (189)
T cd08556 12 PENTLAAFRKALEAGADGVELDVQLTKDGVLVVIHDIPTLEEVLELVKGGVGLNIELKEPTR------------YPGLEA 79 (189)
T ss_pred CchHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEEcCCCCHHHHHHhcccCcEEEEEECCCCC------------chhHHH
Confidence 467788999999999998875443321110 0011222232222 2235555554221 223455
Q ss_pred HHHHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCceeeEecCCCcHHHHHHHhhcCCceEEeeecccccccc
Q 019222 115 CCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTREI 194 (344)
Q Consensus 115 ~~~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~ 194 (344)
.+-+.+++.+. .+=+++.+.+. +.+..+.+...+=++..+--+...............++.+...+..+.
T Consensus 80 ~l~~~i~~~~~--~~~v~i~s~~~-----~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--- 149 (189)
T cd08556 80 KVAELLREYGL--EERVVVSSFDH-----EALRALKELDPEVPTGLLVDKPPLDPLLAELARALGADAVNPHYKLLT--- 149 (189)
T ss_pred HHHHHHHHcCC--cCCEEEEeCCH-----HHHHHHHHhCCCCcEEEEeecCcccchhhhHHHhcCCeEEccChhhCC---
Confidence 55555666652 23334443322 233333333222122222211111111111223344555555555432
Q ss_pred ccchHHHHHHhCCcEEEccc
Q 019222 195 EDDIIPLCRELGIGIVAYSP 214 (344)
Q Consensus 195 ~~~l~~~~~~~gi~v~a~sp 214 (344)
..+++.|+++|+.+.+|..
T Consensus 150 -~~~i~~~~~~g~~v~~wtv 168 (189)
T cd08556 150 -PELVRAAHAAGLKVYVWTV 168 (189)
T ss_pred -HHHHHHHHHcCCEEEEEcC
Confidence 4689999999999999854
No 278
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=22.30 E-value=9.7e+02 Score=25.55 Aligned_cols=95 Identities=12% Similarity=0.084 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHc--CceeeEecCCCcHHHHHHHhhcCCceEEee
Q 019222 108 SPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEE--GKIKYIGLSEASADTIRRAHAVHPITAVQM 185 (344)
Q Consensus 108 ~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~--G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~ 185 (344)
..+.|++-++...........-+|+|+..+... .+.+.+|.+..++ ..++.|-++|.....+..+.+ .|.++
T Consensus 100 gVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT--~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrS----RCq~f 173 (830)
T PRK07003 100 GVDEMAALLERAVYAPVDARFKVYMIDEVHMLT--NHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLS----RCLQF 173 (830)
T ss_pred cHHHHHHHHHHHHhccccCCceEEEEeChhhCC--HHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhh----heEEE
Confidence 455666666654433323345788888765443 2456666666655 589999999976544434333 25666
Q ss_pred eccccccccc-cchHHHHHHhCCc
Q 019222 186 EYSLWTREIE-DDIIPLCRELGIG 208 (344)
Q Consensus 186 ~~n~~~~~~~-~~l~~~~~~~gi~ 208 (344)
.|..+....- .-+...|.+.||.
T Consensus 174 ~Fk~Ls~eeIv~~L~~Il~~EgI~ 197 (830)
T PRK07003 174 NLKQMPAGHIVSHLERILGEERIA 197 (830)
T ss_pred ecCCcCHHHHHHHHHHHHHHcCCC
Confidence 6666654211 1233444455554
No 279
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=22.24 E-value=2.7e+02 Score=27.67 Aligned_cols=118 Identities=19% Similarity=0.222 Sum_probs=69.6
Q ss_pred HHHHHHHHcCCCEEe--CccCc---CC----CChHHHHHHHHhcc---CCCCcEEEEeccCcccCCCc---------ccC
Q 019222 46 SIIKETFNRGITLFD--TSDVY---GV----DHDNEIMVGKALKQ---LPRDKIQLATKFGCFMLDGV---------SIG 104 (344)
Q Consensus 46 ~~l~~A~~~Gi~~~D--tA~~Y---g~----~g~sE~~lG~~l~~---~~R~~~~I~tK~~~~~~~~~---------~~~ 104 (344)
+-++...+.|+.-+- ||-.| |. +|.-|.++..+-+. ..+.++|+++-+|.....++ ...
T Consensus 106 e~f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~~g~~L~Gk~~lTaGLGGMgGAQplA~~m~g~v~l~ 185 (546)
T PF01175_consen 106 EHFERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYETFLNAARKHFGGDLAGKLFLTAGLGGMGGAQPLAATMAGGVGLI 185 (546)
T ss_dssp HHHHHHHHTT---B-TTTTTTT---TTHHHHHHHHHHHHHHHHHHSTTS-TT-EEEEE--STTCCHHHHHHHHTT-EEEE
T ss_pred HHHHHHHhccchhhccccccceEEEcccceeehhhHHHHHHHHHhcCCCCcceEEEEecccccccchHHHHHhcCceEEE
Confidence 335666778887665 55554 22 14455554444332 27888999999886654321 001
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCceeeEecCCCcHHHHHHHhhc
Q 019222 105 VKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV 177 (344)
Q Consensus 105 ~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~ 177 (344)
...++..| -+|+.+.|+|.+. .+++|+++..++.+++|+..+||+-..-.+.++++.+.
T Consensus 186 vEvd~~ri-------~kR~~~g~ld~~~-------~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~ 244 (546)
T PF01175_consen 186 VEVDPSRI-------EKRLEQGYLDEVT-------DDLDEALARAKEARAKKEPLSIGLLGNAADLWEELVER 244 (546)
T ss_dssp EES-HHHH-------HHHHHTTSSSEEE-------SSHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHT
T ss_pred EEECHHHH-------HHHHhCCCeeEEc-------CCHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHc
Confidence 23344433 4677788999742 46899999999999999999999988888888887775
No 280
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=22.23 E-value=3.1e+02 Score=26.61 Aligned_cols=89 Identities=16% Similarity=0.244 Sum_probs=54.1
Q ss_pred HHhhcCCCcceEEEecCCCC-CCCHHHHHHHHHHHHHcCceeeEecCCCcHHHHHHHhhc--------CCceEEeeeccc
Q 019222 119 SLKRLDVDYIDLYYQHRVDT-SVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV--------HPITAVQMEYSL 189 (344)
Q Consensus 119 sL~~L~~d~iDl~~lH~~~~-~~~~~e~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~--------~~~~~~q~~~n~ 189 (344)
.++.||++|. ++..|-. .....+. ...+-+.|-+..+|....+++++++.+.. .|+-+|.+ .++
T Consensus 6 f~~~lgiryP---ii~gpMa~Giss~eL---VaAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~ 78 (418)
T cd04742 6 FKEDYGLRYA---YVAGAMARGIASAEL---VVAMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSP 78 (418)
T ss_pred HHHHhCCCcc---EECCcccCCCCCHHH---HHHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCC
Confidence 3466777764 2333322 1222233 34455689999999999999887765442 24555544 232
Q ss_pred cccccccchHHHHHHhCCcEEEccc
Q 019222 190 WTREIEDDIIPLCRELGIGIVAYSP 214 (344)
Q Consensus 190 ~~~~~~~~l~~~~~~~gi~v~a~sp 214 (344)
-+...+.++++.+.++||.++..+.
T Consensus 79 ~~~~~e~~~v~l~le~gV~~ve~sa 103 (418)
T cd04742 79 DEPELEEGLVDLFLRHGVRVVEASA 103 (418)
T ss_pred CCchhHHHHHHHHHHcCCCEEEecc
Confidence 2222245789999999998776553
No 281
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=22.01 E-value=5.6e+02 Score=22.70 Aligned_cols=130 Identities=18% Similarity=0.188 Sum_probs=73.5
Q ss_pred HHHHHHHhccC--CCC--cEEEEeccCcccCCCcccCCCCCHHHHHHHHHHHHhhcCCCcc--eEEEecCCCCCCCHHHH
Q 019222 72 EIMVGKALKQL--PRD--KIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYI--DLYYQHRVDTSVSIEDT 145 (344)
Q Consensus 72 E~~lG~~l~~~--~R~--~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~i--Dl~~lH~~~~~~~~~e~ 145 (344)
..++.++++.. .+. .+.++..+... .+....+...+.+.+++.+++.- .+=+.-. ......+.+
T Consensus 69 ~~v~~~a~~~~~~~~~~~~~~l~iNis~~---------~l~~~~~~~~l~~~l~~~~~~~~~l~lEitE~-~~~~~~~~~ 138 (256)
T COG2200 69 RWVLEEACRQLRTWPRAGPLRLAVNLSPV---------QLRSPGLVDLLLRLLARLGLPPHRLVLEITES-ALIDDLDTA 138 (256)
T ss_pred HHHHHHHHHHHHhhhhcCCceEEEEcCHH---------HhCCchHHHHHHHHHHHhCCCcceEEEEEeCc-hhhcCHHHH
Confidence 45566666543 222 36666665442 12234556677788888776543 3222221 112344578
Q ss_pred HHHHHHHHHcCceeeEecCCCcH--HHHHHHhhcCCceEEeeeccccccc--------cccchHHHHHHhCCcEEEccc
Q 019222 146 MGELKKLVEEGKIKYIGLSEASA--DTIRRAHAVHPITAVQMEYSLWTRE--------IEDDIIPLCRELGIGIVAYSP 214 (344)
Q Consensus 146 ~~~L~~l~~~G~ir~iGvS~~~~--~~l~~~~~~~~~~~~q~~~n~~~~~--------~~~~l~~~~~~~gi~v~a~sp 214 (344)
...++.|++.|- .|.+..|.. .-+..+. ..+++.+-+.-++...- .-..++..|++.|+.+++-+.
T Consensus 139 ~~~l~~L~~~G~--~ialDDFGtG~ssl~~L~-~l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~~~vvaEGV 214 (256)
T COG2200 139 LALLRQLRELGV--RIALDDFGTGYSSLSYLK-RLPPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGLTVVAEGV 214 (256)
T ss_pred HHHHHHHHHCCC--eEEEECCCCCHHHHHHHh-hCCCCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCCCEEEEeec
Confidence 889999999993 355555522 2233332 25566666555444321 125789999999999998543
No 282
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=21.84 E-value=4.2e+02 Score=24.88 Aligned_cols=134 Identities=17% Similarity=0.177 Sum_probs=75.3
Q ss_pred CCHHHHHHHHHHHHHcC-CCEEeCccCcCCCChHHHHHHHHhccCC-CCcEEEEeccCcccCCCcccCCCCCHHHHHHHH
Q 019222 39 LSHEVGCSIIKETFNRG-ITLFDTSDVYGVDHDNEIMVGKALKQLP-RDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCC 116 (344)
Q Consensus 39 ~~~~~~~~~l~~A~~~G-i~~~DtA~~Yg~~g~sE~~lG~~l~~~~-R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~ 116 (344)
++.++..+.-+.|-+.| .+|...|..++. ++-=..+-++++... --.+-+.--+| ..+.+ -
T Consensus 84 ~~~eeIle~Ak~ak~~Ga~r~c~~aagr~~-~~~~~~i~~~v~~Vk~~~~le~c~slG-----------~l~~e-----q 146 (335)
T COG0502 84 MEVEEILEAAKKAKAAGATRFCMGAAGRGP-GRDMEEVVEAIKAVKEELGLEVCASLG-----------MLTEE-----Q 146 (335)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEEEeccCC-CccHHHHHHHHHHHHHhcCcHHhhccC-----------CCCHH-----H
Confidence 46677777777888999 999999988873 333333444443310 11121222222 11332 2
Q ss_pred HHHHhhcCCCcceEEEecCCCC----------CCCHHHHHHHHHHHHHcCceee----EecCCCcHHHHHHHhhcCCce-
Q 019222 117 EASLKRLDVDYIDLYYQHRVDT----------SVSIEDTMGELKKLVEEGKIKY----IGLSEASADTIRRAHAVHPIT- 181 (344)
Q Consensus 117 ~~sL~~L~~d~iDl~~lH~~~~----------~~~~~e~~~~L~~l~~~G~ir~----iGvS~~~~~~l~~~~~~~~~~- 181 (344)
-+-|+.-|+|+. -|+.+. ...+++-++.++.+++.|.=-. +|+.+-..+.++-+.......
T Consensus 147 ~~~L~~aGvd~y----nhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~ 222 (335)
T COG0502 147 AEKLADAGVDRY----NHNLETSPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLPT 222 (335)
T ss_pred HHHHHHcChhhe----ecccccCHHHHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHHHHHHHHHhCCC
Confidence 334666777653 454432 3457889999999999987433 345554444444444332222
Q ss_pred EEeeeccccccc
Q 019222 182 AVQMEYSLWTRE 193 (344)
Q Consensus 182 ~~q~~~n~~~~~ 193 (344)
.-.+++|.+++.
T Consensus 223 pdsVPIn~l~P~ 234 (335)
T COG0502 223 PDSVPINFLNPI 234 (335)
T ss_pred CCeeeeeeecCC
Confidence 556677777663
No 283
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=21.74 E-value=6.8e+02 Score=23.59 Aligned_cols=24 Identities=8% Similarity=0.164 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCc
Q 019222 39 LSHEVGCSIIKETFNRGITLFDTS 62 (344)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA 62 (344)
.+.++..++++...+.||..|+.+
T Consensus 20 ~s~~~k~~ia~~L~~~Gv~~IEvG 43 (365)
T TIGR02660 20 FTAAEKLAIARALDEAGVDELEVG 43 (365)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe
Confidence 367888999999999999999986
No 284
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=21.74 E-value=3.9e+02 Score=20.77 Aligned_cols=64 Identities=19% Similarity=0.170 Sum_probs=43.4
Q ss_pred CCCcEEEEeccCcccCCCcccCCCCCHHHHHHHHHHHHhhcCC---CcceEEEecCCCCC-CCHHHHHHHHHHHHHc
Q 019222 83 PRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDV---DYIDLYYQHRVDTS-VSIEDTMGELKKLVEE 155 (344)
Q Consensus 83 ~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~---d~iDl~~lH~~~~~-~~~~e~~~~L~~l~~~ 155 (344)
+|=-+.|+-|++.. ...+..|++.+.+.++.+.. ...|++++-.+... .+..++.+.|..|.+.
T Consensus 47 ~R~G~~VsKK~~~~---------AV~RNriKR~lRe~~R~~~~~l~~g~diVvi~r~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03031 47 TRFGISISQKVSKK---------AVVRNRIKRQIRAALRQLLPRIAPGWDLVIIVKPTAAECNYEQFLQELEQLLIQ 114 (122)
T ss_pred cEEEEEEecccccc---------hhhhhHHHHHHHHHHHHhhhccCCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 44445566665532 23678888888888887642 35799999888654 4677888888777654
No 285
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=21.66 E-value=6.7e+02 Score=23.45 Aligned_cols=70 Identities=14% Similarity=0.073 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcceEEEecCCCC-CCCHHHHHHHHHHHHHcCceeeEecCCCcHHHHHHHhh
Q 019222 106 KGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDT-SVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHA 176 (344)
Q Consensus 106 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~-~~~~~e~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~ 176 (344)
+.+.+.-.+-.+-..+-++++.|-|=.+..... ..+..+++++.++|+++|..-.+ +++-++...+++.+
T Consensus 146 ~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~-yc~~d~~~a~~l~~ 216 (326)
T PRK11840 146 CYTAEEAVRTLRLAREAGGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMV-YCSDDPIAAKRLED 216 (326)
T ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEE-EeCCCHHHHHHHHh
Confidence 457777778888888888999988766654433 34688999999999999997633 33444444444433
No 286
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=21.56 E-value=1.4e+02 Score=27.38 Aligned_cols=49 Identities=20% Similarity=0.196 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhhcCCCcc--eEEEecCCCCCCCHHHHHHHHHHHHHcCceee
Q 019222 109 PEYVRKCCEASLKRLDVDYI--DLYYQHRVDTSVSIEDTMGELKKLVEEGKIKY 160 (344)
Q Consensus 109 ~~~i~~~~~~sL~~L~~d~i--Dl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir~ 160 (344)
.+...+.+.+.+++||+.+- .-+.-+.+ ...+.+++.+++|.++|.|-.
T Consensus 81 ~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~---~~~~~v~~~f~~L~~~G~iY~ 131 (312)
T cd00668 81 VEEMSGEHKEDFRRLGISYDWSDEYITTEP---EYSKAVELIFSRLYEKGLIYR 131 (312)
T ss_pred HHHHHHHHHHHHHHhCccccCCCCeECCCH---HHHHHHHHHHHHHHHCCCEEe
Confidence 45667789999999998552 23333332 245688999999999999764
No 287
>PRK06298 type III secretion system protein; Validated
Probab=21.42 E-value=90 Score=29.54 Aligned_cols=26 Identities=23% Similarity=0.436 Sum_probs=23.1
Q ss_pred cchHHHHHHhCCcEEEcccCcccccC
Q 019222 196 DDIIPLCRELGIGIVAYSPLGRGFFA 221 (344)
Q Consensus 196 ~~l~~~~~~~gi~v~a~spl~~G~l~ 221 (344)
..+.+.|++|||+++..-||++.+..
T Consensus 293 ~~Ir~iA~e~~VPiven~pLARaLy~ 318 (356)
T PRK06298 293 KRIIAEAEKYGVPIMRNVPLAHQLLD 318 (356)
T ss_pred HHHHHHHHHcCCCEEeCHHHHHHHHH
Confidence 46889999999999999999988764
No 288
>PRK06256 biotin synthase; Validated
Probab=21.34 E-value=6.5e+02 Score=23.19 Aligned_cols=102 Identities=21% Similarity=0.190 Sum_probs=51.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEE-eCccCcCCCChHHHHHHHHhccCC-CCcEEEEeccCcccCCCcccCCCCCHHHHHHHH
Q 019222 39 LSHEVGCSIIKETFNRGITLF-DTSDVYGVDHDNEIMVGKALKQLP-RDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCC 116 (344)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~-DtA~~Yg~~g~sE~~lG~~l~~~~-R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~ 116 (344)
.+.++..+.++.+.+.|++.| -.+..++.....-+.+-+.++... +-.+-+.+-.+. .+++.+
T Consensus 91 ~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~~i~~~~~~g~-----------l~~e~l---- 155 (336)
T PRK06256 91 LDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEETDLEICACLGL-----------LTEEQA---- 155 (336)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhcCCCcEEecCCc-----------CCHHHH----
Confidence 477888999999999998633 223233321111123334444321 122323222221 233333
Q ss_pred HHHHhhcCCCcceEEEecC-------CCCCCCHHHHHHHHHHHHHcCc
Q 019222 117 EASLKRLDVDYIDLYYQHR-------VDTSVSIEDTMGELKKLVEEGK 157 (344)
Q Consensus 117 ~~sL~~L~~d~iDl~~lH~-------~~~~~~~~e~~~~L~~l~~~G~ 157 (344)
+-|++.|++.+-+- +.. ..+....++.+++++.+++.|.
T Consensus 156 -~~LkeaG~~~v~~~-lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi 201 (336)
T PRK06256 156 -ERLKEAGVDRYNHN-LETSRSYFPNVVTTHTYEDRIDTCEMVKAAGI 201 (336)
T ss_pred -HHHHHhCCCEEecC-CccCHHHHhhcCCCCCHHHHHHHHHHHHHcCC
Confidence 34777787655331 111 1112345677788888888775
No 289
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=21.33 E-value=1.1e+02 Score=26.19 Aligned_cols=45 Identities=22% Similarity=0.343 Sum_probs=31.0
Q ss_pred eeEecCCC-cHHHHHHHhhcC-CceEEeeeccccccccccchHHHHHHhCCcEEE
Q 019222 159 KYIGLSEA-SADTIRRAHAVH-PITAVQMEYSLWTREIEDDIIPLCRELGIGIVA 211 (344)
Q Consensus 159 r~iGvS~~-~~~~l~~~~~~~-~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a 211 (344)
-.||..+- +.++++.+++.. .|. .+ +....+++++|+++|+.+++
T Consensus 60 ~~vGAGTV~~~e~a~~a~~aGA~Fi-----vS---P~~~~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 60 LLVGAGTVLTAEQAEAAIAAGAQFI-----VS---PGFDPEVIEYAREYGIPYIP 106 (196)
T ss_dssp SEEEEES--SHHHHHHHHHHT-SEE-----EE---SS--HHHHHHHHHHTSEEEE
T ss_pred CeeEEEeccCHHHHHHHHHcCCCEE-----EC---CCCCHHHHHHHHHcCCcccC
Confidence 35888874 888888887753 332 12 22346899999999999987
No 290
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=21.32 E-value=64 Score=25.90 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=14.2
Q ss_pred HHHHHHHHcCCCEEeCccCcC
Q 019222 46 SIIKETFNRGITLFDTSDVYG 66 (344)
Q Consensus 46 ~~l~~A~~~Gi~~~DtA~~Yg 66 (344)
..+...++.|||+||-=-.++
T Consensus 30 ~~i~~QL~~GiR~lDlrv~~~ 50 (146)
T PF00388_consen 30 WSIREQLESGIRYLDLRVWDG 50 (146)
T ss_dssp HHHHHHHHTT--EEEEEEEEE
T ss_pred HhHHHHHhccCceEEEEEEcC
Confidence 467899999999999554443
No 291
>PF13518 HTH_28: Helix-turn-helix domain
Probab=21.30 E-value=1.2e+02 Score=19.03 Aligned_cols=22 Identities=14% Similarity=0.557 Sum_probs=16.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Q 019222 255 RLETLAAKYGCTTPQLALAWLLH 277 (344)
Q Consensus 255 ~l~~la~~~g~s~~q~al~w~l~ 277 (344)
.+.++|+++|+|..++ .+|+-.
T Consensus 14 s~~~~a~~~gis~~tv-~~w~~~ 35 (52)
T PF13518_consen 14 SVREIAREFGISRSTV-YRWIKR 35 (52)
T ss_pred CHHHHHHHHCCCHhHH-HHHHHH
Confidence 4677889999988776 777754
No 292
>PLN02389 biotin synthase
Probab=21.30 E-value=7.2e+02 Score=23.70 Aligned_cols=102 Identities=17% Similarity=0.136 Sum_probs=56.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCccCc-CCCC--hHHHHHHHHhccCCCCcEEEEeccCcccCCCcccCCCCCHHHHHHH
Q 019222 39 LSHEVGCSIIKETFNRGITLFDTSDVY-GVDH--DNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKC 115 (344)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Y-g~~g--~sE~~lG~~l~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~ 115 (344)
.+.++..+.++.+.+.|++.|-..... |..+ ..-+.+-+.++......+.|....|.. +. .
T Consensus 116 Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~l~i~~s~G~l-----------~~-----E 179 (379)
T PLN02389 116 MSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGMEVCCTLGML-----------EK-----E 179 (379)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCCcEEEECCCCC-----------CH-----H
Confidence 578889999999999999988532111 1101 112344445544322234444333322 32 2
Q ss_pred HHHHHhhcCCCcceEEEecC-C------CCCCCHHHHHHHHHHHHHcCc
Q 019222 116 CEASLKRLDVDYIDLYYQHR-V------DTSVSIEDTMGELKKLVEEGK 157 (344)
Q Consensus 116 ~~~sL~~L~~d~iDl~~lH~-~------~~~~~~~e~~~~L~~l~~~G~ 157 (344)
.-+-|+..|+|++-+- +.. + -.....++.+++++.+++.|.
T Consensus 180 ~l~~LkeAGld~~~~~-LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi 227 (379)
T PLN02389 180 QAAQLKEAGLTAYNHN-LDTSREYYPNVITTRSYDDRLETLEAVREAGI 227 (379)
T ss_pred HHHHHHHcCCCEEEee-ecCChHHhCCcCCCCCHHHHHHHHHHHHHcCC
Confidence 2333455577765432 221 1 112357888999999999985
No 293
>PF08418 Pol_alpha_B_N: DNA polymerase alpha subunit B N-terminal; InterPro: IPR013627 This is the eukaryotic DNA polymerase alpha subunit B N-terminal domain which is involved in complex formation []. ; PDB: 4E2I_9 2KEB_A 3FLO_G.
Probab=21.20 E-value=91 Score=27.72 Aligned_cols=49 Identities=12% Similarity=0.168 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHH---HhCCCCeEeccCCCCHHHHHHhHc
Q 019222 250 KLLYTRLETLAAKYGCTTPQLALAWL---LHQGDDIVPIPGTTKITNLDNNIG 299 (344)
Q Consensus 250 ~~~~~~l~~la~~~g~s~~q~al~w~---l~~~~v~~~i~g~~~~~~l~~nl~ 299 (344)
...+.+|..||..|++++.+++..|- +.+.. ...-+...+.+.+++.+.
T Consensus 9 ~~vl~kl~slc~~~~ls~edL~~kWeaf~~~~~~-~~~~l~~~~L~~F~~~lq 60 (253)
T PF08418_consen 9 PDVLEKLQSLCRLYNLSAEDLFYKWEAFSLNMQL-DDTKLTLDNLDQFKQYLQ 60 (253)
T ss_dssp HHHHHHHHTHHHHST--HHHHHHHHTTHHHHTT--SC----TTTTTGGGTTTS
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCC-CcCcCCHHHHHHHHHHHH
Confidence 56778999999999999999999884 34432 122355566666666554
No 294
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=21.18 E-value=6.2e+02 Score=22.89 Aligned_cols=121 Identities=14% Similarity=0.064 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCc-eeeEec---------------------CCCc
Q 019222 110 EYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGK-IKYIGL---------------------SEAS 167 (344)
Q Consensus 110 ~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~-ir~iGv---------------------S~~~ 167 (344)
..+...+++.-.+-+---|-.+.+-+| +.+.+.+.|..|.+.|- +-.+|| .+++
T Consensus 2 ~r~~~~F~~l~~~~~~a~i~yit~GdP----~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t 77 (265)
T COG0159 2 SRLDQKFAQLKAENRGALIPYVTAGDP----DLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVT 77 (265)
T ss_pred chHHHHHHHHHHhCCCCeEEEEeCCCC----CHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCC
Q ss_pred HHHHHHHhhcCC------ceEEeeeccccccccccchHHHHHHhCCcEEEcccCcccccCCCCCCCCCCchhhhhcCCCC
Q 019222 168 ADTIRRAHAVHP------ITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAMHPRF 241 (344)
Q Consensus 168 ~~~l~~~~~~~~------~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~l~~~~~~~~~~~~~~~~~~~~~ 241 (344)
.+..-++.+... +.+.+.-||+..+......++.|++.|+.=+---=|-
T Consensus 78 ~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP------------------------- 132 (265)
T COG0159 78 LEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLP------------------------- 132 (265)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCC-------------------------
Q ss_pred CchhhHHHHHHHHHHHHHHHHhCCCH
Q 019222 242 SGENLEKNKLLYTRLETLAAKYGCTT 267 (344)
Q Consensus 242 ~~~~~~~~~~~~~~l~~la~~~g~s~ 267 (344)
.+..+.+.+.|++||+.+
T Consensus 133 --------~ee~~~~~~~~~~~gi~~ 150 (265)
T COG0159 133 --------PEESDELLKAAEKHGIDP 150 (265)
T ss_pred --------hHHHHHHHHHHHHcCCcE
No 295
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.89 E-value=7.1e+02 Score=23.44 Aligned_cols=87 Identities=11% Similarity=0.150 Sum_probs=56.3
Q ss_pred EEecCCCCC-----------CCHHHHHHHHHHHHHcC----ceeeEecC--CCcHHHHHHH---hhcCCceEEeeecccc
Q 019222 131 YYQHRVDTS-----------VSIEDTMGELKKLVEEG----KIKYIGLS--EASADTIRRA---HAVHPITAVQMEYSLW 190 (344)
Q Consensus 131 ~~lH~~~~~-----------~~~~e~~~~L~~l~~~G----~ir~iGvS--~~~~~~l~~~---~~~~~~~~~q~~~n~~ 190 (344)
+-||.++++ .+++++++++.+....+ +++++=+. |.+.++++++ +...+..++-++||+.
T Consensus 211 iSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l~~~vnlIPyn~~ 290 (349)
T PRK14463 211 VSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDIPSKVNLIPFNEH 290 (349)
T ss_pred EeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhccCceEEEEecCCC
Confidence 568887542 34577888888777654 23455444 3445555544 4445567888999987
Q ss_pred ccc----cc----cchHHHHHHhCCcEEEcccCcc
Q 019222 191 TRE----IE----DDIIPLCRELGIGIVAYSPLGR 217 (344)
Q Consensus 191 ~~~----~~----~~l~~~~~~~gi~v~a~spl~~ 217 (344)
... +. .......+++||.+....+.+.
T Consensus 291 ~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR~~~G~ 325 (349)
T PRK14463 291 EGCDFRSPTQEAIDRFHKYLLDKHVTVITRSSRGS 325 (349)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCc
Confidence 531 11 3456677889999999888754
No 296
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=20.88 E-value=6.5e+02 Score=23.03 Aligned_cols=58 Identities=19% Similarity=0.221 Sum_probs=42.3
Q ss_pred HHHHHHhhcCCCcceEEEecCCCCCCCHHHHHHHHHHHHHcCceeeEecCCCcHHHHHHHh
Q 019222 115 CCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAH 175 (344)
Q Consensus 115 ~~~~sL~~L~~d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~ 175 (344)
...+.|+..+...=|++..-.....+ .+++.+++.+++.| ++-|++++.+...+.+..
T Consensus 119 ~~~~~l~~~~l~~~DvvI~IS~SG~T--~~vi~al~~Ak~~G-a~tI~IT~~~~s~La~~a 176 (299)
T PRK05441 119 LGAADLKAINLTAKDVVVGIAASGRT--PYVIGALEYARERG-ALTIGISCNPGSPLSKEA 176 (299)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCCCC--HHHHHHHHHHHHCC-CeEEEEECCCCChhhHhC
Confidence 34455666666777988887655544 46999999999998 577999988766665543
No 297
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=20.80 E-value=44 Score=25.05 Aligned_cols=67 Identities=19% Similarity=0.199 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeccCCCCHHHHHHhHccc-------CCCCCHHHHHHHHhhCCC
Q 019222 251 LLYTRLETLAAKYGCTTPQLALAWLLHQGDDIVPIPGTTKITNLDNNIGSL-------ALKLKEEDLKEICKTIPV 319 (344)
Q Consensus 251 ~~~~~l~~la~~~g~s~~q~al~w~l~~~~v~~~i~g~~~~~~l~~nl~a~-------~~~L~~e~~~~i~~~~~~ 319 (344)
..++++..+++..|+.+..-... .+.+| -....+|+.+.+.+.+.+... +-+||+.+.+.|++.+..
T Consensus 8 ~~l~El~~L~~t~g~~vv~~~~q-~~~~~-~p~~~iG~GK~eei~~~~~~~~~d~vvfd~~Lsp~Q~rNLe~~~~~ 81 (95)
T PF13167_consen 8 ESLEELEELAETAGYEVVGTVVQ-KRRKP-DPKTYIGSGKVEEIKELIEELDADLVVFDNELSPSQQRNLEKALGV 81 (95)
T ss_pred HHHHHHHHHHHHCCCeEEEEEEe-cCCCC-CcceeechhHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHHHCC
Confidence 45678888888888765542211 22233 367899999999999977654 347999999999999854
No 298
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=20.79 E-value=5e+02 Score=24.51 Aligned_cols=87 Identities=11% Similarity=0.175 Sum_probs=55.9
Q ss_pred EEEecCCCCC-----------CCHHHHHHHHHHHHHcCceeeEecC-------CCcHHHHHH---HhhcCCceEEeeecc
Q 019222 130 LYYQHRVDTS-----------VSIEDTMGELKKLVEEGKIKYIGLS-------EASADTIRR---AHAVHPITAVQMEYS 188 (344)
Q Consensus 130 l~~lH~~~~~-----------~~~~e~~~~L~~l~~~G~ir~iGvS-------~~~~~~l~~---~~~~~~~~~~q~~~n 188 (344)
.+-||.|+.. .++++.+++.+....... +.|-+- |.+.++.++ ++...+..++-++||
T Consensus 215 AiSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~-~rVt~EY~Ll~~VND~~e~A~~L~~ll~~~~~~VNLIP~N 293 (349)
T COG0820 215 AISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSG-RRVTFEYVLLDGVNDSLEHAKELAKLLKGIPCKVNLIPYN 293 (349)
T ss_pred EEecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccC-ceEEEEeeecccccCCHHHHHHHHHHhcCCCceEEEeecC
Confidence 3678998642 356788888888776555 433221 334555444 444456689999999
Q ss_pred cccccc-c-------cchHHHHHHhCCcEEEcccCcc
Q 019222 189 LWTREI-E-------DDIIPLCRELGIGIVAYSPLGR 217 (344)
Q Consensus 189 ~~~~~~-~-------~~l~~~~~~~gi~v~a~spl~~ 217 (344)
+..... + ....+..+++||.+....+-+.
T Consensus 294 p~~~~~y~r~~~~~i~~F~~~L~~~gv~~tvR~~~g~ 330 (349)
T COG0820 294 PVPGSDYERSSKERIRKFLKILKKAGVLVTVRKTRGD 330 (349)
T ss_pred CCCCCCccCCcHHHHHHHHHHHHhCCeeEEecccccc
Confidence 987542 1 2345566678888888776654
No 299
>cd08590 PI-PLCc_Rv2075c_like Catalytic domain of uncharacterized Mycobacterium tuberculosis Rv2075c-like proteins. This subfamily corresponds to the catalytic domain present in uncharacterized Mycobacterium tuberculosis Rv2075c and its homologs. Members in this family are more closely related to the Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1(SaPLC1)-like proteins rather than the typical bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). In contrast, SaPLC1-like proteins have two Ca2+-chelating amino acid substitutions which convert them to metal-dependent bacterial PI-PLC. Rv2075c and its homologs have the same amino acid substitutions as well, which might suggest they have metal-dependent PI-PLC activity.
Probab=20.71 E-value=3.9e+02 Score=24.12 Aligned_cols=18 Identities=11% Similarity=0.193 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHcCceeeE
Q 019222 144 DTMGELKKLVEEGKIKYI 161 (344)
Q Consensus 144 e~~~~L~~l~~~G~ir~i 161 (344)
..|-.|++++++||.--+
T Consensus 150 ~~wpTL~em~~~GkrViv 167 (267)
T cd08590 150 PNWPTKEDMLNSGKQVVL 167 (267)
T ss_pred CCCCCHHHHHhCCCEEEE
Confidence 357889999999996544
No 300
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=20.70 E-value=3.2e+02 Score=19.76 Aligned_cols=55 Identities=11% Similarity=0.035 Sum_probs=32.9
Q ss_pred CcceEEEecCCCCCCCHHHHHHHHHHHHHcC-ceeeEecCCC-cHHHHHHHhhcCCceEE
Q 019222 126 DYIDLYYQHRVDTSVSIEDTMGELKKLVEEG-KIKYIGLSEA-SADTIRRAHAVHPITAV 183 (344)
Q Consensus 126 d~iDl~~lH~~~~~~~~~e~~~~L~~l~~~G-~ir~iGvS~~-~~~~l~~~~~~~~~~~~ 183 (344)
...|++++....+..+..+++ +.+++.+ .++-|.+++. +.....++++..-.+++
T Consensus 42 ~~~d~iiid~~~~~~~~~~~~---~~i~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l 98 (112)
T PF00072_consen 42 HPPDLIIIDLELPDGDGLELL---EQIRQINPSIPIIVVTDEDDSDEVQEALRAGADDYL 98 (112)
T ss_dssp STESEEEEESSSSSSBHHHHH---HHHHHHTTTSEEEEEESSTSHHHHHHHHHTTESEEE
T ss_pred cCceEEEEEeeeccccccccc---cccccccccccEEEecCCCCHHHHHHHHHCCCCEEE
Confidence 448999998665555544444 4555554 6777777765 45566666654433333
No 301
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=20.61 E-value=7e+02 Score=23.29 Aligned_cols=23 Identities=9% Similarity=0.159 Sum_probs=15.3
Q ss_pred CCHHHHHHHHH-------HHHHcCCCEEeC
Q 019222 39 LSHEVGCSIIK-------ETFNRGITLFDT 61 (344)
Q Consensus 39 ~~~~~~~~~l~-------~A~~~Gi~~~Dt 61 (344)
++.++..++++ .|.++|+..++-
T Consensus 132 mt~eeI~~ii~~f~~aA~~a~~aGfDgVei 161 (337)
T PRK13523 132 MTKEQIKETVLAFKQAAVRAKEAGFDVIEI 161 (337)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 56666655544 445689998884
No 302
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=20.54 E-value=3.2e+02 Score=27.45 Aligned_cols=46 Identities=22% Similarity=0.247 Sum_probs=38.4
Q ss_pred CCCCHHHHHHHHHHHHHcCceeeEecCCCcHHHHHHHhhcCCceEE
Q 019222 138 TSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAV 183 (344)
Q Consensus 138 ~~~~~~e~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~ 183 (344)
...+.+++.+.+.+.++..+|+.||+-.+..-++...++...+..+
T Consensus 408 ~~id~~~I~ew~~~~~~~~~i~~v~~D~~g~~~~~~~l~~~g~~lv 453 (546)
T COG4626 408 DLIDYAEIVEWFMEIREKFLIKLVGFDPSGAGEFRDALAEAGIKVV 453 (546)
T ss_pred CccCHHHHHHHHHHHHHhCCccEEeecccchHHHHHHHHhCCCcee
Confidence 3456788999999999999999999999999998888887665433
No 303
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=20.42 E-value=6.3e+02 Score=22.64 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCc
Q 019222 39 LSHEVGCSIIKETFNRGITLFDTS 62 (344)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA 62 (344)
.+.++..++.+..-+.||..|+..
T Consensus 17 f~~~~~~~ia~~L~~~GVd~IEvG 40 (266)
T cd07944 17 FGDEFVKAIYRALAAAGIDYVEIG 40 (266)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEee
Confidence 367888999999889999999976
No 304
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=20.36 E-value=7.1e+02 Score=23.24 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=15.6
Q ss_pred CCHHHHHHHH-------HHHHHcCCCEEeCc
Q 019222 39 LSHEVGCSII-------KETFNRGITLFDTS 62 (344)
Q Consensus 39 ~~~~~~~~~l-------~~A~~~Gi~~~DtA 62 (344)
++.++..+++ +.|.++|+..++--
T Consensus 142 mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih 172 (338)
T cd02933 142 LTTEEIPGIVADFRQAARNAIEAGFDGVEIH 172 (338)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 4666554444 45567899999864
No 305
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=20.33 E-value=1.4e+02 Score=21.67 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=22.2
Q ss_pred cchHHHHHHhCCcEEEcccCccccc
Q 019222 196 DDIIPLCRELGIGIVAYSPLGRGFF 220 (344)
Q Consensus 196 ~~l~~~~~~~gi~v~a~spl~~G~l 220 (344)
..+++.++++||.++-..+|+.-+.
T Consensus 30 ~~I~~~A~e~~VPi~~~~~LAr~L~ 54 (82)
T TIGR00789 30 ERIIEIAKKHGIPIVEDPDLVDVLL 54 (82)
T ss_pred HHHHHHHHHcCCCEEeCHHHHHHHH
Confidence 5689999999999999999997664
No 306
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=20.13 E-value=4.3e+02 Score=24.15 Aligned_cols=94 Identities=18% Similarity=0.233 Sum_probs=58.7
Q ss_pred HhhcCCCcceEEEecCCCCCCCHHHHH-----HHHHHHHHcCceeeEecCCCcHH-------HHHHHhhcCCceEEeeec
Q 019222 120 LKRLDVDYIDLYYQHRVDTSVSIEDTM-----GELKKLVEEGKIKYIGLSEASAD-------TIRRAHAVHPITAVQMEY 187 (344)
Q Consensus 120 L~~L~~d~iDl~~lH~~~~~~~~~e~~-----~~L~~l~~~G~ir~iGvS~~~~~-------~l~~~~~~~~~~~~q~~~ 187 (344)
++-++-.++|+..+..+.......+.. +.+.++.++--=|++|+.+.++. ++++......++ ++..
T Consensus 55 ~~~~~~~~i~~~~~~~~~~~~~~~d~~~~~~nd~~a~~~~~~pdrf~~~~~v~p~~~~~a~~E~er~v~~~gf~--g~~l 132 (293)
T COG2159 55 LAFMDAAGIDLFVLSGMGEVAIIPDLRRALANDDLAALAAEYPDRFVGFARVDPRDPEAAAEELERRVRELGFV--GVKL 132 (293)
T ss_pred HhhhcccccceEEeeccccccchHHHhhhhhhHHHHHHHhhCCcceeeeeeeCCCchHHHHHHHHHHHHhcCce--EEEe
Confidence 778888899988888411212222222 46778888888889999877553 344444444444 4444
Q ss_pred ccccccc-----c-cchHHHHHHhCCcEEEcccC
Q 019222 188 SLWTREI-----E-DDIIPLCRELGIGIVAYSPL 215 (344)
Q Consensus 188 n~~~~~~-----~-~~l~~~~~~~gi~v~a~spl 215 (344)
++..+.. . ..+++.|+++|+.++-+...
T Consensus 133 ~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~ 166 (293)
T COG2159 133 HPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGA 166 (293)
T ss_pred cccccCCCCCChHHHHHHHHHHHcCCCEEEEeCC
Confidence 4433321 1 45899999999999875444
No 307
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.12 E-value=7.3e+02 Score=23.28 Aligned_cols=95 Identities=15% Similarity=0.103 Sum_probs=60.3
Q ss_pred CCCcEEEEeccCcccCC----Cc--ccCCCCCHHHHHHHHHHHHhhcCC--CcceEEEecC-CCCCCCHHHHHHHHHHHH
Q 019222 83 PRDKIQLATKFGCFMLD----GV--SIGVKGSPEYVRKCCEASLKRLDV--DYIDLYYQHR-VDTSVSIEDTMGELKKLV 153 (344)
Q Consensus 83 ~R~~~~I~tK~~~~~~~----~~--~~~~~~~~~~i~~~~~~sL~~L~~--d~iDl~~lH~-~~~~~~~~e~~~~L~~l~ 153 (344)
.|..+.|+|-.|....- .+ ......+++.|..++......+|+ ..++-+.+-. -++....+.++++++.+.
T Consensus 91 ~~~t~cvSsq~GC~l~C~fC~tg~~g~~r~Lt~~EI~~qv~~~~~~~g~~~~~i~~Vvf~GmGEPlln~~~v~~~i~~l~ 170 (343)
T PRK14468 91 DRKTICVSTMVGCPAGCAFCATGAMGFGRNLTAAEILDQVLAVAGHEGISPREIRNVVLMGMGEPLLNYENVLKAARIML 170 (343)
T ss_pred CCCEEEEEecCCCCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhcCcCcCCccEEEEeccCccccCHHHHHHHHHHhc
Confidence 47778888886654331 11 124578899999998877766654 2455554543 455556788999998884
Q ss_pred H-cCc---eeeEecCCCc-HHHHHHHhhc
Q 019222 154 E-EGK---IKYIGLSEAS-ADTIRRAHAV 177 (344)
Q Consensus 154 ~-~G~---ir~iGvS~~~-~~~l~~~~~~ 177 (344)
+ .|. .|.+.+|+.. +..++++.+.
T Consensus 171 ~~~g~~l~~r~itvST~G~~~~i~~L~~~ 199 (343)
T PRK14468 171 HPQALAMSPRRVTLSTVGIPKGIRRLAEE 199 (343)
T ss_pred ccccccccCceEEEECCCChHHHHHHHHh
Confidence 4 443 2578888763 4455565543
No 308
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=20.06 E-value=2.2e+02 Score=23.73 Aligned_cols=42 Identities=21% Similarity=0.405 Sum_probs=27.6
Q ss_pred HHHHHH-HHcCCCEEeCccCcCCCChHHHHHHHHhccC-CCCcEEEEe
Q 019222 46 SIIKET-FNRGITLFDTSDVYGVDHDNEIMVGKALKQL-PRDKIQLAT 91 (344)
Q Consensus 46 ~~l~~A-~~~Gi~~~DtA~~Yg~~g~sE~~lG~~l~~~-~R~~~~I~t 91 (344)
..|... .+.|++.....-. ++ .+..|-++|++. .+.+++|+|
T Consensus 22 ~~l~~~L~~~G~~v~~~~~v-~D---d~~~I~~~l~~~~~~~dlVItt 65 (170)
T cd00885 22 AFLAKELAELGIEVYRVTVV-GD---DEDRIAEALRRASERADLVITT 65 (170)
T ss_pred HHHHHHHHHCCCEEEEEEEe-CC---CHHHHHHHHHHHHhCCCEEEEC
Confidence 344444 4789988765433 33 366677777654 678899999
No 309
>PRK10551 phage resistance protein; Provisional
Probab=20.05 E-value=4.3e+02 Score=26.33 Aligned_cols=98 Identities=13% Similarity=0.159 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhhcCCCcceEEE-ecCCCCCCCHHHHHHHHHHHHHcCceeeEecCCCcH--HHHHHHhhcCCceEEeeec
Q 019222 111 YVRKCCEASLKRLDVDYIDLYY-QHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASA--DTIRRAHAVHPITAVQMEY 187 (344)
Q Consensus 111 ~i~~~~~~sL~~L~~d~iDl~~-lH~~~~~~~~~e~~~~L~~l~~~G~ir~iGvS~~~~--~~l~~~~~~~~~~~~q~~~ 187 (344)
.+...+.+.++.++....-+.+ +.......+ .+..+.++.|++.|- .|.+.+|.. ..+.. +...+++.+-+.-
T Consensus 365 ~f~~~l~~~l~~~~~~~~~LvlEItE~~~~~~-~~~~~~l~~Lr~~G~--~ialDDFGtg~ssl~~-L~~l~vD~lKID~ 440 (518)
T PRK10551 365 SFKADVQRLLASLPADHFQIVLEITERDMVQE-EEATKLFAWLHSQGI--EIAIDDFGTGHSALIY-LERFTLDYLKIDR 440 (518)
T ss_pred hHHHHHHHHHHhCCCCcceEEEEEechHhcCC-HHHHHHHHHHHHCCC--EEEEECCCCCchhHHH-HHhCCCCEEEECH
Confidence 3445566666666654322221 221111112 346678899999998 455554421 12222 2223556555554
Q ss_pred cccccc--------cccchHHHHHHhCCcEEEc
Q 019222 188 SLWTRE--------IEDDIIPLCRELGIGIVAY 212 (344)
Q Consensus 188 n~~~~~--------~~~~l~~~~~~~gi~v~a~ 212 (344)
++...- .-..+++.|++.|+.++|=
T Consensus 441 ~fv~~i~~~~~~~~il~~ii~la~~lgi~vVAE 473 (518)
T PRK10551 441 GFIQAIGTETVTSPVLDAVLTLAKRLNMLTVAE 473 (518)
T ss_pred HHHhhhccChHHHHHHHHHHHHHHHCCCEEEEE
Confidence 433321 1146899999999999885
Done!