BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>019224
MVMPFKLLEDVNLWEYVDLPIFRVEEPGGQNWLVEKRKLDDGLPVLAPFQLAGPMELWIQ
DAKDMRISLPHDVDAGVLKKVVLADGAVVTVNGARSVSLRHPIDLPLPLNQSNNGFASGL
LTLAEQLRHASRAQGAPLLSLRIVGPTSLAAPPASSPSPSNKLKLKRLAPGLVELSSRAK
TETTDALSTIDLQEGATTLLTPKHFTTMWPVASVNGSNHNLLGFETLLSSVLGPKAKQKG
SFKLLKADVSAQTFLKIGFGVEKKLKEGDGFDLEGFPEWRTKPETVKLHFEVLAKVDGEK
VIPERVVQVNPFDVEDTVAPNVLLGNKTMSQTPIIYPPQSPFDL

High Scoring Gene Products

Symbol, full name Information P value
TIN1
AT5G64510
protein from Arabidopsis thaliana 3.9e-115
AT1G47310 protein from Arabidopsis thaliana 3.3e-10

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  019224
        (344 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2174749 - symbol:TIN1 "AT5G64510" species:3702...  1135  3.9e-115  1
TAIR|locus:2203751 - symbol:AT1G47310 "AT1G47310" species...   124  3.3e-10   2


>TAIR|locus:2174749 [details] [associations]
            symbol:TIN1 "AT5G64510" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM] [GO:0009555 "pollen development"
            evidence=IMP] [GO:0005783 "endoplasmic reticulum" evidence=IDA]
            [GO:0006457 "protein folding" evidence=RCA] [GO:0006984 "ER-nucleus
            signaling pathway" evidence=RCA] [GO:0009408 "response to heat"
            evidence=RCA] [GO:0009644 "response to high light intensity"
            evidence=RCA] [GO:0034976 "response to endoplasmic reticulum
            stress" evidence=RCA] [GO:0042542 "response to hydrogen peroxide"
            evidence=RCA] GO:GO:0005783 EMBL:CP002688 GenomeReviews:BA000015_GR
            EMBL:BT004046 EMBL:BT005161 IPI:IPI00528055 RefSeq:NP_201256.2
            UniGene:At.49219 STRING:Q84JN2 PRIDE:Q84JN2 DNASU:836572
            EnsemblPlants:AT5G64510.1 GeneID:836572 KEGG:ath:AT5G64510
            TAIR:At5g64510 eggNOG:NOG244488 HOGENOM:HOG000238313
            InParanoid:Q84JN2 OMA:AMSESVL PhylomeDB:Q84JN2
            ProtClustDB:CLSN2681125 ArrayExpress:Q84JN2 Genevestigator:Q84JN2
            Uniprot:Q84JN2
        Length = 424

 Score = 1135 (404.6 bits), Expect = 3.9e-115, P = 3.9e-115
 Identities = 235/347 (67%), Positives = 273/347 (78%)

Query:     2 VMPFKLLEDVNLWEYVDLPIFRVEEPGGQNWLV----EKRKLDDGLPVLAPFQLAGPMEL 57
             V+PFKLLEDVN WEYVDLPIF+VE+P  +N LV    +K   DD LPVLAPFQL+GPMEL
Sbjct:    86 VLPFKLLEDVNRWEYVDLPIFQVEQPS-ENGLVPMRNKKTSSDDVLPVLAPFQLSGPMEL 144

Query:    58 WIQDAKDMRISLPHDVDAGVLKKVVLADGAVVTVNGARSVSLRHPIDLPLPLNQSNNGFA 117
             WIQDA +MR+SLP+DVDAGVLKKV+LADGAVVTV GARSVSLRHPIDLPLPLNQS+N FA
Sbjct:   145 WIQDANNMRLSLPYDVDAGVLKKVILADGAVVTVKGARSVSLRHPIDLPLPLNQSSNEFA 204

Query:   118 SGLLTLAEQLRHASRAQGAPLLSLRIVGXXXXXXXXXXXXXXXXXXXXXRLAPGLVELSS 177
             SGLL+LAEQLR AS  Q +P+LSLRIVG                     RLAPGLVELSS
Sbjct:   205 SGLLSLAEQLRRASTDQESPVLSLRIVGPTSLASTSQSPDNKLKLK---RLAPGLVELSS 261

Query:   178 RAKTETTDALSTIDLQEGATTLLTPKHFTTMWPVASVNGSNHNLLGFETLLSSVLGPKAK 237
              +K + +  LSTI      TT+LTP+ FTTMWP+ S+NGSN NLLGFE LL+SVLGPKA+
Sbjct:   262 MSKDKRS--LSTIGAN-AMTTVLTPREFTTMWPITSINGSNANLLGFEKLLTSVLGPKAQ 318

Query:   238 QKGSFKLLKADVSAQTFLKIGFGVEKKLKEGDGFDLEGFPEWRTKPETVKLHFEVLAKVD 297
             +KGSFK+LKA V+AQTF+KIGFG+EKKLKE D   L  FPEWRTKPET+++HFEVLAKVD
Sbjct:   319 EKGSFKVLKAKVAAQTFMKIGFGIEKKLKEADVEGLS-FPEWRTKPETMRMHFEVLAKVD 377

Query:   298 GEKVIPERVVQVNPFDVEDTVAPNVLLGNKTMSQTPIIYPPQSPFDL 344
             GE VIPE V++V+P  +EDT+A NV+ GN TMS+ PII  P SPF L
Sbjct:   378 GENVIPENVMRVDPIPLEDTIAQNVITGNVTMSKLPIIESPPSPFTL 424


>TAIR|locus:2203751 [details] [associations]
            symbol:AT1G47310 "AT1G47310" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] EMBL:CP002684 EMBL:AC015449 EMBL:BT006464
            EMBL:AK228276 IPI:IPI00520469 PIR:H96513 RefSeq:NP_564503.1
            UniGene:At.38649 EnsemblPlants:AT1G47310.1 GeneID:841134
            KEGG:ath:AT1G47310 TAIR:At1g47310 InParanoid:Q9FX03 OMA:RFEIRIR
            PhylomeDB:Q9FX03 ProtClustDB:CLSN2688503 Genevestigator:Q9FX03
            Uniprot:Q9FX03
        Length = 395

 Score = 124 (48.7 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
 Identities = 35/120 (29%), Positives = 63/120 (52%)

Query:   225 ETLLSSVLGPKAKQKGSFKLLKADVSAQTFLKIGFGVEKKLKEGDGFDLEGFPEWRTKPE 284
             E +L+S LG   +Q  S   + A + A   ++    +E+ + + +   +     WRTKP+
Sbjct:   276 EKVLNS-LGNGTRQTVSS--VTAKLKASGMVRFQLEIERSIGKNESV-ISKKVAWRTKPK 331

Query:   285 TVKLHFEVLAKVDGEKVIPERVVQVNPFDVEDTVAPNVLLGNKTMSQTPIIYPPQSPFDL 344
               ++ FEV AK++G+K+   R+ +V PF   DT A + L+ N + ++ P +  PQ    L
Sbjct:   332 IERVWFEVTAKIEGDKLKAVRLRKVVPFIEVDTEAWSSLMSNMSFTKFPSLLVPQEALTL 391

 Score = 90 (36.7 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
 Identities = 19/54 (35%), Positives = 32/54 (59%)

Query:    48 PFQLAGPMELWIQDAKDMRISLPHDVDAGVLKKVVLADGAVVTVNGARSVSLRH 101
             P  L GP EL +     + +SLP ++    LK+V++++G  V +  A++VSL H
Sbjct:   126 PLVLKGPFELLVDGNDRLSLSLPMNISHSGLKRVLVSEGISVEIREAQAVSLFH 179

 Score = 37 (18.1 bits), Expect = 9.1e-05, Sum P(2) = 9.1e-05
 Identities = 9/30 (30%), Positives = 19/30 (63%)

Query:   103 IDLPLPLNQSNNGFASGLLT--LAEQLRHA 130
             + L LP+N S++G    L++  ++ ++R A
Sbjct:   143 LSLSLPMNISHSGLKRVLVSEGISVEIREA 172


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.136   0.400    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      344       323   0.00086  116 3  11 22  0.42    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  593 (63 KB)
  Total size of DFA:  203 KB (2113 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.68u 0.11s 23.79t   Elapsed:  00:00:01
  Total cpu time:  23.68u 0.11s 23.79t   Elapsed:  00:00:01
  Start:  Sat May 11 04:21:10 2013   End:  Sat May 11 04:21:11 2013

Back to top