BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019224
         (344 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|C1D1F5|COMB_DEIDV Probable 2-phosphosulfolactate phosphatase OS=Deinococcus deserti
           (strain VCD115 / DSM 17065 / LMG 22923) GN=comB PE=3
           SV=1
          Length = 246

 Score = 35.8 bits (81), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 2/84 (2%)

Query: 64  DMRISLPHDVDAGVLKKVVLADGAVVTVNGAR-SVSLRHPIDLPL-PLNQSNNGFASGLL 121
           D R+SL     AGVL + +LA G     +GAR ++++R  +  P+  L+ S +G   G L
Sbjct: 150 DARVSLEDVYAAGVLAEYLLALGGFSIDDGARIALTMRRNVGNPIEALSSSVHGERLGQL 209

Query: 122 TLAEQLRHASRAQGAPLLSLRIVG 145
            L E +R+A++   + L+ + + G
Sbjct: 210 GLGEDVRYAAQVSTSTLVPVLVSG 233


>sp|Q1B8U4|SSUB_MYCSS Aliphatic sulfonates import ATP-binding protein SsuB
           OS=Mycobacterium sp. (strain MCS) GN=ssuB PE=3 SV=1
          Length = 245

 Score = 33.9 bits (76), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 6/50 (12%)

Query: 67  ISLPHDVDAGVLKKVVLADGAVVTVNGARSVSLRHPIDLPLPLNQSNNGF 116
           + + HDVD  +L    LAD  VV  +G   VSL   +DLP P ++ + GF
Sbjct: 179 LHVTHDVDEAIL----LADRVVVLSDG--RVSLDRRVDLPFPRSRGDEGF 222


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.135    0.394 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 134,604,262
Number of Sequences: 539616
Number of extensions: 5812529
Number of successful extensions: 15659
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 15653
Number of HSP's gapped (non-prelim): 15
length of query: 344
length of database: 191,569,459
effective HSP length: 118
effective length of query: 226
effective length of database: 127,894,771
effective search space: 28904218246
effective search space used: 28904218246
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)